Citrus Sinensis ID: 010952

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------
Protein Sequence
MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEEEccccccccHHHccccccccEEEccccccccccHHHHcccccccEEEccccccccccHHHHHccccccEEEccccccccccHHHHcccccccEEEccccccccccHHHHcccccccEEEccccccccccHHHccccccccEEEccccccccccHHHccccccccEEEccccccccccHHHHcccccccEEEccccccccccHHHHHccccccEEEccccccccccHHHccccccccEEccccccccccHHHHHHHccccccEEEccccccccHHHHHccccccccEEEcccccccHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccccccccHHHccccccHEEEHccccccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEcccccccccccHHHcccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEccccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccHHHHHcccc
Coil and Loop (DISEMBL)
MLPRDISQQIFNELVYSRCLTEVSLEAFRDCAlqypgvndkWMDVIASQGSSLlsvdlsgsdvtdsglihlkdcsnlqsldfnFCIQisdgglehlrglsnltslsfRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIkwcncitdsdmkplsgltnlkslQISCSKVTDSGIAYLKGLQKLTllnlegcpvtAACLDSLSALGSLFYLnlnrcqlsddgcekfskigslkvlnlgfneITDECLVHLkgltnleslnldscgigdeglvnltglcnlkclelsdtqvgssglrhlsgltnlesinlsftgisdgslrklaglsslkslnldarQITDTGLAALtsltglthldlfgaritDSGAAYLRNFKNLRSLEIcgggltdagvkhikdlssltllnlsqncnltdkTLELISGLTGlvslnvsnsritsaglrhlkplknlrsltlESCKVTANDIkrlqsrdlpnlvsfrpe
Flexible Loop (DISEMBL)
mlprdisqqIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGlvnlkglmkLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSritsaglrhlkplknlrslTLESCKVtandikrlqsrdlpnlvsfrpe
Low Complexity Region (SEG)
MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIASQgssllsvdlsgsdvtdsglIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYlkglqkltllnlEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQItdtglaaltsltglthlDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDlssltllnlsqncnlTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE
Disordered region (IsUnstruct)
********QIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI*****************
Disordered Region (DISOPRED)
MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP*
Disordered Region (DISEMBL)
MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE
Disordered Region (DISPRO)
MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	497	2.2.26 [Sep-21-2011]
Q8BID8	400	F-box/LRR-repeat protein	yes	no	0.583	0.725	0.328	6e-18
Q17R01	400	F-box/LRR-repeat protein	yes	no	0.583	0.725	0.328	6e-18
Q8N1E6	418	F-box/LRR-repeat protein	yes	no	0.609	0.724	0.322	6e-18
Q723K6	800	Internalin-A OS=Listeria	yes	no	0.670	0.416	0.315	9e-15
G2K3G6	800	Internalin-A OS=Listeria	yes	no	0.670	0.416	0.312	1e-14
P0DJM0	800	Internalin-A OS=Listeria	yes	no	0.665	0.413	0.312	9e-14
Q8NEE6	735	F-box/LRR-repeat protein	no	no	0.752	0.508	0.246	9e-11
P23799	630	Putative adenylate cyclas	N/A	no	0.788	0.622	0.287	1e-10
P26337	630	Putative adenylate cyclas	N/A	no	0.792	0.625	0.291	2e-10
Q9C5D2	610	F-box/LRR-repeat protein	no	no	0.845	0.688	0.284	2e-10

>sp|Q8BID8|FXL14_MOUSE F-box/LRR-repeat protein 14 OS=Mus musculus GN=Fbxl14 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 48/338 (14%)

Query: 170 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 228
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 229 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 283
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 284 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 332
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 333 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 387
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 388 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 445
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 446 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 482
           +   +RIT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 400

Substrate-recognition component of some (SKP1-CUL1-F-box protein)-type E3 ubiquitin-protein ligase complexes. The SCF(FBXL14) complex acts by mediating ubiquitination and subsequent degradation of SNAI1.
Mus musculus (taxid: 10090)

>sp|Q17R01|FXL14_BOVIN F-box/LRR-repeat protein 14 OS=Bos taurus GN=FBXL14 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 48/338 (14%)

Query: 170 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 228
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 229 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 283
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 284 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 332
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 333 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 387
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 388 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 445
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 446 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 482
           +   +RIT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 400

Substrate-recognition component of some SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin-protein ligase complexes. The SCF(FBXL14) complex acts by mediating ubiquitination and subsequent degradation of SNAI1.

Bos taurus (taxid: 9913)

>sp|Q8N1E6|FXL14_HUMAN F-box/LRR-repeat protein 14 OS=Homo sapiens GN=FBXL14 PE=1 SV=1

 Score = 92.8 bits (229), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 114/353 (32%), Positives = 184/353 (52%), Gaps = 50/353 (14%)

Query: 170 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 228
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 229 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 283
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 284 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 332
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 333 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 387
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 388 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 445
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 446 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 497
           +   +RIT  GL  +  L  L+ L L   ++T  D ++    D   L + R  
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMT--DSEKEARGDFSPLFTVRTR 413

Substrate-recognition component of some SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin-protein ligase complexes. The SCF(FBXL14) complex acts by mediating ubiquitination and subsequent degradation of SNAI1.

Homo sapiens (taxid: 9606)

>sp|Q723K6|INLA_LISMF Internalin-A OS=Listeria monocytogenes serotype 4b (strain F2365) GN=inlA PE=3 SV=1

 Score = 82.0 bits (201), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151

Query: 111 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 170
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 171 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 227
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 228 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 287
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 288 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 337
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 338 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 387
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 388 N------FKNLRSLEICGGGLTDAGVKHIKDLS 414
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459

Mediates the entry of Listeria monocytogenes into cells.

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

>sp|G2K3G6|INLA_LISM4 Internalin-A OS=Listeria monocytogenes serotype 1/2a (strain 10403S) GN=inlA PE=3 SV=1

 Score = 81.6 bits (200), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 111 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 170
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 171 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 227
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 228 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 287
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 288 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 337
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 338 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 387
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426

Query: 388 N------FKNLRSLEICGGGLTDAGVKHIKDLS 414
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459

Mediates the entry of Listeria monocytogenes into cells.

Listeria monocytogenes serotype 1/2a (strain 10403S) (taxid: 393133)

>sp|P0DJM0|INLA_LISMO Internalin-A OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=inlA PE=1 SV=1

 Score = 79.0 bits (193), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 53  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 112
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 113 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 172
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 173 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 229
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 230 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 289
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 290 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 337
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 338 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 388
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 389 -----FKNLRSLEICGGGLTDAGVKHIKDLS 414
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459

Mediates the entry of L.monocytogenes into cells.

Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

>sp|Q8NEE6|FXL13_HUMAN F-box/LRR-repeat protein 13 OS=Homo sapiens GN=FBXL13 PE=2 SV=3

 Score = 68.9 bits (167), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 115/467 (24%), Positives = 204/467 (43%), Gaps = 93/467 (19%)

Query: 9   QIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 68
           + F  + + R L E+++    DC    P   D+ M  I+     +L ++LS + +T+  +
Sbjct: 236 KTFRSVSHCRNLQELNVS---DC----PTFTDESMRHISEGCPGVLCLNLSNTTITNRTM 288

Query: 69  IHL-KDCSNLQSLDFNFCIQISDGGLEHLR---GLSNLTSLSFRRNNAITAQGMKAFA-- 122
             L +   NLQ+L   +C + +D GL++L    G   L  L       I+ QG +  A  
Sbjct: 289 RLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYIANS 348

Query: 123 --GLINL------------VKLDLERCTRI---------HGGLVNLKGL--MKLESLNIK 157
             G+++L            VK  +E+C+RI         H      + L   KL  +  +
Sbjct: 349 CTGIMHLTINDMPTLTDNCVKALVEKCSRITSLVFTGAPHISDCTFRALSACKLRKIRFE 408

Query: 158 WCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 215
               +TD+  K +     NL  + ++ C  +TDS +  L  L++LT+LNL  C       
Sbjct: 409 GNKRVTDASFKFIDKNYPNLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANC------- 461

Query: 216 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 275
                                           +++ ++G  +  D           +  L
Sbjct: 462 --------------------------------VRIGDMGLKQFLDG-----PASMRIREL 484

Query: 276 NLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISD 332
           NL +C  + D  ++ L+  C NL  L L + + + + G+ ++  + +L SI+LS T IS+
Sbjct: 485 NLSNCVRLSDASVMKLSERCPNLNYLSLRNCEHLTAQGIGYIVNIFSLVSIDLSGTDISN 544

Query: 333 GSLRKLAGLSSLKSLNL-DARQITDTGLAAL-TSLTGLTHLDL-FGARITDSGAAYLRNF 389
             L  L+    LK L++ +  +ITD G+ A   S   L HLD+ + ++++D     L  +
Sbjct: 545 EGLNVLSRHKKLKELSVSECYRITDDGIQAFCKSSLILEHLDVSYCSQLSDMIIKALAIY 604

Query: 390 -KNLRSLEICG-GGLTDAGVKHIK-DLSSLTLLNLSQNCNLTDKTLE 433
             NL SL I G   +TD+ ++ +      L +L++S    LTD+ LE
Sbjct: 605 CINLTSLSIAGCPKITDSAMEMLSAKCHYLHILDISGCVLLTDQILE 651

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Homo sapiens (taxid: 9606)

>sp|P23799|ESAG8_TRYBB Putative adenylate cyclase regulatory protein OS=Trypanosoma brucei brucei GN=ESAG8 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 127/441 (28%), Positives = 209/441 (47%), Gaps = 49/441 (11%)

Query: 60  GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN--NAITAQG 117
           GS++ D  L  L+D   L+ LD + C  +    L  +  L NL  L  +R   N +    
Sbjct: 121 GSELQD--LTALRDLEALEDLDLSECANLELRELMVVLTLRNLRKLRMKRTMVNDMWCSS 178

Query: 118 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN-IKWCNCITDSD-MKPLSGLTN 175
           +     L++L ++D  R      G+ ++ GL +L++L  +   NCI  +     +  L  
Sbjct: 179 IGLLKFLVHL-EVDGSR------GVTDITGLFRLKTLEALSLDNCINITKGFDKICALPQ 231

Query: 176 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 235
           L SL +  + VTD  +  +    KL +L++  C      L ++  + SL  L+L+ C   
Sbjct: 232 LTSLSLCQTNVTDKDLRCIHPDGKLKMLDISSCHEITD-LTAIGGVRSLEKLSLSGCWNV 290

Query: 236 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 295
             G E+  K  +L+ L++    +    +V LK L NL+ L++ +C    + L  L  L N
Sbjct: 291 TKGLEELCKFSNLRELDISGCLVLGSAVV-LKNLINLKVLSVSNCK-NFKDLNGLERLVN 348

Query: 296 LKCLELSDTQVGSSGLRHLSGLTNLESINLS-------FTGISDGSLRKLAGLSSLKSLN 348
           L+ L LS    G S L  ++ L+NL+ +++S       F G+ D        L++L+ L 
Sbjct: 349 LEKLNLSGCH-GVSSLGFVANLSNLKELDISGCESLVCFDGLQD--------LNNLEVLY 399

Query: 349 L-DARQITDTGLAALTSLTGLTHLDLFGA-RITD-SGAAYLRNFKNLRSLEICGGGLTDA 405
           L D +  T+ G  A+ +L+ +  LDL G  RIT  SG   L+  + L SLE CG  ++  
Sbjct: 400 LRDVKSFTNVG--AIKNLSKMRELDLSGCERITSLSGLETLKGLEEL-SLEGCGEIMS-- 454

Query: 406 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 465
               I  L  L +L +S+  NL D  L  +  LTGL  + +   R  +    +  P+ NL
Sbjct: 455 -FDPIWSLYHLRVLYVSECGNLED--LSGLQCLTGLEEMYLHGCRKCT----NFGPIWNL 507

Query: 466 RSL-TLE-SCKVTANDIKRLQ 484
           R++  LE SC    +D+  LQ
Sbjct: 508 RNVCVLELSCCENLDDLSGLQ 528

May be involved in the postranscriptional regulation of genes in VSG expression sites.

Trypanosoma brucei brucei (taxid: 5702)

>sp|P26337|ESA8C_TRYEQ Putative adenylate cyclase regulatory protein OS=Trypanosoma equiperdum GN=ESAG8C PE=2 SV=1

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 128/439 (29%), Positives = 202/439 (46%), Gaps = 45/439 (10%)

Query: 60  GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN--NAITAQG 117
           GS++ D  L  L+D   L+ LD + C  +    L  +  L NL  L  +R   N +    
Sbjct: 121 GSELQD--LTALRDLEALEDLDLSECANLELRELMVVLTLRNLRKLRMKRTMVNDMWCSS 178

Query: 118 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 177
           +     L++L ++D  R      GL  LK    LE+L++  C  IT      +  L  L 
Sbjct: 179 IGLLKFLVHL-EVDGSRGVTDITGLCRLK---TLEALSLDSCINITKG-FDKICALPQLT 233

Query: 178 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 237
           SL +  + VTD  +  +    KL +L    C      L ++  + SL  L+L+ C     
Sbjct: 234 SLSLCQTNVTDKDLRCIHPDGKLKVLRYSSCHEITD-LTAIGGMRSLEKLSLSGCWNVTK 292

Query: 238 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 297
           G E+  K  +L+ L++    +    +V LK L NL+ L++ +C    + L  L  L NL 
Sbjct: 293 GLEELCKFSNLRELDISGCLVLGSAVV-LKNLINLKVLSVSNCK-NFKDLNGLERLVNLD 350

Query: 298 CLELSDTQVGSSGLRHLSGLTNLESINLS-------FTGISDGSLRKLAGLSSLKSLNL- 349
            L LS    G S L  ++ L+NL+ +++S       F G+ D        L++L+ L L 
Sbjct: 351 KLNLSGCH-GVSSLGFVANLSNLKELDISGCESLVCFDGLQD--------LNNLEVLYLR 401

Query: 350 DARQITDTGLAALTSLTGLTHLDLFGA-RITD-SGAAYLRNFKNLRSLEICGGGLTDAGV 407
           D +  T+ G  A+ +L+ +  LDL G  RIT  SG   L+  + L SLE CG  ++    
Sbjct: 402 DVKSFTNVG--AIKNLSKMRELDLSGCERITSLSGLETLKGLEEL-SLEGCGEIMS---F 455

Query: 408 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 467
             I  L  L +L +S+  NL D  L  + G+TGL  L +   R  +    +  P+ NLR+
Sbjct: 456 DPIWSLHHLRVLYVSECGNLED--LSGLEGITGLEELYLHGCRKCT----NFGPIWNLRN 509

Query: 468 LTLE--SCKVTANDIKRLQ 484
           + +   SC     D+  LQ
Sbjct: 510 VCVVELSCCENLEDLSGLQ 528

May be involved in the postranscriptional regulation of genes in VSG expression sites.

Trypanosoma equiperdum (taxid: 5694)

>sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 137/481 (28%), Positives = 223/481 (46%), Gaps = 61/481 (12%)

Query: 36  PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFCIQISD-GGL 93
           P V+   +  +A + +SL S+DL G  V D GL  + K C  L+ L+  FC  ++D G +
Sbjct: 151 PNVSSVGLCSLAQKCTSLKSLDLQGCYVGDQGLAAVGKFCKQLEELNLRFCEGLTDVGVI 210

Query: 94  EHLRGLS-NLTSLSFRRNNAITAQGMKAFAG---LINLVKLDLERCTRIH-GGLVNL-KG 147
           + + G S +L S+    +  IT   ++A      L+ ++ LD E    IH  GL+ + +G
Sbjct: 211 DLVVGCSKSLKSIGVAASAKITDLSLEAVGSHCKLLEVLYLDSE---YIHDKGLIAVAQG 267

Query: 148 LMKLESLNIKWCNCITDSDMKPLSGL-TNLKSLQI-SCSKVTDSGI-AYLKGLQKLTLLN 204
             +L++L ++ C  +TD     +  L T+L+ L + S    TD G+ A  KG +KL  L 
Sbjct: 268 CHRLKNLKLQ-CVSVTDVAFAAVGELCTSLERLALYSFQHFTDKGMRAIGKGSKKLKDLT 326

Query: 205 LEGCP-VTAACLDSLS-ALGSLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEIT 259
           L  C  V+   L++++     L  + +N C  +   G E   K    LK L L +   I 
Sbjct: 327 LSDCYFVSCKGLEAIAHGCKELERVEINGCHNIGTRGIEAIGKSCPRLKELALLYCQRIG 386

Query: 260 DECLVHL-KGLTNLESLNLDSC-GIGD-------EGLVNLTGLCNLKCLELSDTQVGSSG 310
           +  L  + KG  +LE L+L  C GIGD       +G  NL  L   +C E+ +  + S G
Sbjct: 387 NSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLKKLHIRRCYEIGNKGIISIG 446

Query: 311 LRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALT-SLTG 367
            +H   LT L   +L F   + + +L  +    SL+ LN+    QI+D G+ A+      
Sbjct: 447 -KHCKSLTEL---SLRFCDKVGNKALIAIGKGCSLQQLNVSGCNQISDAGITAIARGCPQ 502

Query: 368 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG--LTDAGVKHIKDLSSLTLLNLSQNC 425
           LTHLD+          + L+N  ++   E+  G   L D  + H   ++   L +L Q C
Sbjct: 503 LTHLDI----------SVLQNIGDMPLAELGEGCPMLKDLVLSHCHHITDNGLNHLVQKC 552

Query: 426 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRH-LKPLKNLRSLTLESCKVTANDIKRLQ 484
            L + T  +           V    ITSAG+   +    +++ + +E  KVT    +R  
Sbjct: 553 KLLE-TCHM-----------VYCPGITSAGVATVVSSCPHIKKVLIEKWKVTERTTRRAG 600

Query: 485 S 485
           S
Sbjct: 601 S 601

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	497
225463572	578	PREDICTED: F-box/LRR-repeat protein 14 [	1.0	0.859	0.797	0.0
449436168	578	PREDICTED: F-box/LRR-repeat protein 14-l	1.0	0.859	0.777	0.0
359484681	578	PREDICTED: insulin-like growth factor-bi	1.0	0.859	0.753	0.0
356519276	577	PREDICTED: F-box/LRR-repeat protein 14-l	0.997	0.859	0.788	0.0
224120462	576	predicted protein [Populus trichocarpa]	0.997	0.861	0.735	0.0
357458869	585	F-box/LRR-repeat protein [Medicago trunc	1.0	0.849	0.741	0.0
182407840	580	F-box-containing protein 1 [Malus x dome	1.0	0.856	0.741	0.0
388500850	577	unknown [Medicago truncatula]	1.0	0.861	0.743	0.0
357468127	573	F-box/LRR-repeat protein [Medicago trunc	0.987	0.856	0.740	0.0
297844484	578	leucine-rich repeat family protein [Arab	0.997	0.858	0.767	0.0

>gi|225463572|ref|XP_002270172.1| PREDICTED: F-box/LRR-repeat protein 14 [Vitis vinifera] gi|297743556|emb|CBI36423.3| unnamed protein product [Vitis vinifera]

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/503 (79%), Positives = 454/503 (90%), Gaps = 6/503 (1%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQ------YPGVNDKWMDVIASQGSSLL 54
           MLPRDISQQIFNELV+S+CLT+VSL+AF+DCALQ      YPGV+D WMDVI+SQG SLL
Sbjct: 76  MLPRDISQQIFNELVFSQCLTDVSLKAFQDCALQDIYLGEYPGVSDSWMDVISSQGVSLL 135

Query: 55  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 114
           SVDLSGS++T+SGLIHLKDC+NLQ+L+ N+C QISD GL+H+ GLSNLT+LSFRRNNAIT
Sbjct: 136 SVDLSGSEITNSGLIHLKDCTNLQALNLNYCDQISDHGLKHISGLSNLTTLSFRRNNAIT 195

Query: 115 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 174
           AQGM AF+ L+NLVKLDLERC  IHGGL++LKGL KLESLNI  C+CITD+D+KPLSGLT
Sbjct: 196 AQGMSAFSSLVNLVKLDLERCPGIHGGLIHLKGLTKLESLNINMCHCITDADLKPLSGLT 255

Query: 175 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 234
           NLK L+IS SKVTD G+AYLKGL KL LLN+EGCPVTAACL+SLS L SL  LNLNR  L
Sbjct: 256 NLKGLEISRSKVTDDGVAYLKGLHKLALLNMEGCPVTAACLESLSDLPSLLSLNLNRSML 315

Query: 235 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 294
           SDDGCE F++  +L+VLNLGFN++TD CLVHLKGLTNLESLNLDSC I DEGL NLTGL 
Sbjct: 316 SDDGCENFARQENLRVLNLGFNDLTDACLVHLKGLTNLESLNLDSCRICDEGLANLTGLR 375

Query: 295 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 354
           +LKCLELSDT+VGS+GLRHLSGL NLESINLSFT ++D  LRKL+ LSSLKSLNLDARQI
Sbjct: 376 HLKCLELSDTEVGSNGLRHLSGLANLESINLSFTAVTDSGLRKLSALSSLKSLNLDARQI 435

Query: 355 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 414
           TD GLAALTSLTGLTHLDLFGARITDSG +YLRNFKNL+SLEICGGGLTDAGVK+IKDL+
Sbjct: 436 TDAGLAALTSLTGLTHLDLFGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLT 495

Query: 415 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 474
            LT+LNLSQNCNLTDK+LELISGLT LVSL+VSNSRIT+AGL+HLK LKNL+SLTL+SCK
Sbjct: 496 CLTVLNLSQNCNLTDKSLELISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCK 555

Query: 475 VTANDIKRLQSRDLPNLVSFRPE 497
           VT NDIK+LQS+DLPNLVSFRPE
Sbjct: 556 VTVNDIKKLQSKDLPNLVSFRPE 578

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436168|ref|XP_004135866.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus] gi|449509305|ref|XP_004163550.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus]

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/503 (77%), Positives = 447/503 (88%), Gaps = 6/503 (1%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQ------YPGVNDKWMDVIASQGSSLL 54
           MLPRD+SQ I NELVYS+ LT++S++AFRDCALQ       PGVND W+DVI+SQGSS+L
Sbjct: 76  MLPRDLSQLILNELVYSQLLTDISIQAFRDCALQDLHFGECPGVNDAWIDVISSQGSSVL 135

Query: 55  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 114
           SVDLSGS+VTDSGL++L++CSNLQSL+ NFC  ISD GL H+ G S LTSLSFR+N+ IT
Sbjct: 136 SVDLSGSEVTDSGLMNLRNCSNLQSLNLNFCEHISDRGLAHIGGFSRLTSLSFRKNSEIT 195

Query: 115 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 174
           AQGM  FA L+NL++LDLE+C  IHGGLV+L+GL KLESLNIKWCNCITDSD+KPLSGLT
Sbjct: 196 AQGMSVFAHLVNLIRLDLEKCPGIHGGLVHLQGLRKLESLNIKWCNCITDSDIKPLSGLT 255

Query: 175 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 234
           NLK LQISCSKVTD+GIAYLKGL KL+LLNLEGCPVTAACL +LSALG+L YLNL+RC +
Sbjct: 256 NLKGLQISCSKVTDAGIAYLKGLHKLSLLNLEGCPVTAACLYTLSALGALQYLNLSRCHI 315

Query: 235 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 294
           +DDG E+FS +G+LK+LNLGFN+ITDECLVHLKGLTNLESLNLDSC I D+GLVNL  L 
Sbjct: 316 TDDGSEQFSGLGALKILNLGFNDITDECLVHLKGLTNLESLNLDSCRIEDDGLVNLKALH 375

Query: 295 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 354
            LKCLELSDT VGS+GLRHLSGL NLE +NLSFT ++D  L+KL+GLSSLKSLNLD RQI
Sbjct: 376 RLKCLELSDTDVGSNGLRHLSGLFNLEKLNLSFTVVTDIGLKKLSGLSSLKSLNLDTRQI 435

Query: 355 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 414
           TD GLA+LT L GLTHLDLFGARITDSG  YLRNFKNL+SLEICGGGLTDAGVK+IKDLS
Sbjct: 436 TDIGLASLTGLVGLTHLDLFGARITDSGTNYLRNFKNLQSLEICGGGLTDAGVKNIKDLS 495

Query: 415 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 474
           SL +LNLSQN NLTDK+LELISGLTGLVSLN+SNSRITSAGLRHLK LKNL+ LTLE+C+
Sbjct: 496 SLMVLNLSQNGNLTDKSLELISGLTGLVSLNISNSRITSAGLRHLKTLKNLKQLTLEACR 555

Query: 475 VTANDIKRLQSRDLPNLVSFRPE 497
           V+A+DIK+LQS DLPNLVSFRPE
Sbjct: 556 VSASDIKKLQSTDLPNLVSFRPE 578

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484681|ref|XP_002262830.2| PREDICTED: insulin-like growth factor-binding protein complex acid labile subunit-like [Vitis vinifera] gi|296084545|emb|CBI25566.3| unnamed protein product [Vitis vinifera]

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/503 (75%), Positives = 437/503 (86%), Gaps = 6/503 (1%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQ------YPGVNDKWMDVIASQGSSLL 54
           MLPRDISQQIF+  V S CLT  SLEAFRDCA+Q      YP VND WMD+I+SQG SLL
Sbjct: 76  MLPRDISQQIFDNFVDSHCLTSASLEAFRDCAIQDVNLGEYPEVNDSWMDIISSQGLSLL 135

Query: 55  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 114
           SVDLSGS VTD GL  LKDCSN+Q L FN+C QIS+ GL+++ GLSNLTSLSF+++N +T
Sbjct: 136 SVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNISGLSNLTSLSFKKSNTVT 195

Query: 115 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 174
           A+GM+AF+ L+NL KLDLERC+RIHGGL++LKGL KLESLNI++C CITDSD+K LSGLT
Sbjct: 196 AEGMRAFSSLVNLAKLDLERCSRIHGGLIHLKGLTKLESLNIRYCKCITDSDLKALSGLT 255

Query: 175 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 234
           +LK LQ+SCS +TD GI+YLKGL KL LL++EGC VT +CLDSLSAL +L YLNLNRC L
Sbjct: 256 SLKELQMSCSNITDIGISYLKGLCKLMLLDVEGCHVTTSCLDSLSALVALSYLNLNRCGL 315

Query: 235 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 294
           SD GCEKFS + +LKVLN+GFN ITD CLVHLKGLTNLESLNLDSC I DEGL NLTGL 
Sbjct: 316 SDVGCEKFSGLKNLKVLNMGFNNITDACLVHLKGLTNLESLNLDSCSIEDEGLANLTGLS 375

Query: 295 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 354
            LKCLELSDT+VGS+GL HLSGLT LES+NLSFT ++D  L+KL GL+SLKSLNLDARQI
Sbjct: 376 LLKCLELSDTKVGSNGLCHLSGLTKLESLNLSFTLVTDSGLKKLCGLTSLKSLNLDARQI 435

Query: 355 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 414
           TD GLAA+TSLTGLTHLDLFGARI+D+G   LR+FKNL++LEICGGGLTDAGVK+IK L+
Sbjct: 436 TDAGLAAITSLTGLTHLDLFGARISDAGTNCLRHFKNLQTLEICGGGLTDAGVKNIKGLA 495

Query: 415 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 474
           SLTLLNLSQNCNLTDKTLE+ISGLT LVSLNVSNSRIT+ GL+HLKPLKNL SL+LESCK
Sbjct: 496 SLTLLNLSQNCNLTDKTLEMISGLTALVSLNVSNSRITNNGLQHLKPLKNLLSLSLESCK 555

Query: 475 VTANDIKRLQSRDLPNLVSFRPE 497
           VTA++I++LQS  LPNLVSFRPE
Sbjct: 556 VTASEIRKLQSTALPNLVSFRPE 578

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519276|ref|XP_003528299.1| PREDICTED: F-box/LRR-repeat protein 14-like isoform 1 [Glycine max]

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/502 (78%), Positives = 434/502 (86%), Gaps = 6/502 (1%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQ------YPGVNDKWMDVIASQGSSLL 54
           MLPRDISQ IFN LVYSR LT  SLEAFRDCALQ      Y GVND WM VI+SQGSSLL
Sbjct: 75  MLPRDISQLIFNNLVYSRRLTSASLEAFRDCALQDLYLGEYDGVNDNWMGVISSQGSSLL 134

Query: 55  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 114
           SVDLSGSDVTD GL +LKDC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSGSDVTDFGLTYLKDCESLISLNLNYCDQISDRGLECISGLSNLTSLSFRRNDSIS 194

Query: 115 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 174
           AQGM AF+GL+NLVKLDLERC  IHGGLV+L+GL KLESLN+KWCNCITD DMKPLS L 
Sbjct: 195 AQGMSAFSGLVNLVKLDLERCPGIHGGLVHLRGLTKLESLNLKWCNCITDYDMKPLSELA 254

Query: 175 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 234
           +LKSL+IS SKVTD GI++LKGLQKL LLNLEGC VTAACLDSL+ L +L  LNLNRC L
Sbjct: 255 SLKSLEISSSKVTDFGISFLKGLQKLALLNLEGCLVTAACLDSLAELPALSNLNLNRCNL 314

Query: 235 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 294
           SD+GC+K S++ +LKVLNLGFN ITD CLVHLKGLT LESLNLDSC IGDEGLVNL GL 
Sbjct: 315 SDNGCKKISRLENLKVLNLGFNVITDACLVHLKGLTKLESLNLDSCKIGDEGLVNLAGLE 374

Query: 295 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 354
            L CLELSDT+VGS+GL HLSGL++L+ INLSFT ISD SLRKL+GLSSLKSLNLDA QI
Sbjct: 375 QLNCLELSDTEVGSNGLHHLSGLSSLQKINLSFTMISDSSLRKLSGLSSLKSLNLDAYQI 434

Query: 355 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 414
           TD GLA LTSLTGLT LDLFGARITD G  YL+ FKNLRSLEICGG LTDAGVK+IK+LS
Sbjct: 435 TDAGLANLTSLTGLTDLDLFGARITDFGTNYLKKFKNLRSLEICGGVLTDAGVKNIKELS 494

Query: 415 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 474
           SL  LNLSQN NLTDKTLELISGLTGLVSLNVSNSRIT+AGL+HLK LKNLRSLTLESCK
Sbjct: 495 SLVCLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRITNAGLQHLKTLKNLRSLTLESCK 554

Query: 475 VTANDIKRLQSRDLPNLVSFRP 496
           VTANDIK+L+S  LPNLVSFRP
Sbjct: 555 VTANDIKKLKSIYLPNLVSFRP 576

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120462|ref|XP_002331054.1| predicted protein [Populus trichocarpa] gi|222872984|gb|EEF10115.1| predicted protein [Populus trichocarpa]

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/503 (73%), Positives = 428/503 (85%), Gaps = 7/503 (1%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQ------YPGVNDKWMDVIASQGSSLL 54
           MLPRD+SQQIFNELV S  LT  SLEAFRDCALQ      YPGV D WMDVI+SQGSSLL
Sbjct: 75  MLPRDLSQQIFNELVISHSLTAASLEAFRDCALQDVLLGEYPGVMDSWMDVISSQGSSLL 134

Query: 55  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 114
           SVDLS SDVTD+GL  LKDCSNLQ++  N+C  ISD GL+HL GL+N+TSLS +++ ++T
Sbjct: 135 SVDLSDSDVTDAGLGLLKDCSNLQAIALNYCNNISDNGLKHLSGLTNITSLSLKKSCSVT 194

Query: 115 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 174
           A+GM+AF+ L+NL  LD+ERC+ IHGGLV+LKGL KLESLNI+ C CITD DMK +SGLT
Sbjct: 195 AEGMRAFSTLLNLENLDMERCSGIHGGLVHLKGLKKLESLNIRCCKCITDMDMKAISGLT 254

Query: 175 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 234
           NLK LQIS + VTD G++YL+GLQKL +LNLEGC +T ACLDS+SAL +L YLNLNRC L
Sbjct: 255 NLKELQISNTNVTDVGVSYLRGLQKLIMLNLEGCNITTACLDSISALATLAYLNLNRCHL 314

Query: 235 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 294
            DDGC+KFS + +LKVL+L FN++TD CLVHLKGL NLESLNLDSC IGDEG+ NL GL 
Sbjct: 315 PDDGCDKFSGLKNLKVLSLAFNDVTDACLVHLKGLKNLESLNLDSCRIGDEGIANLAGL- 373

Query: 295 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 354
            LK LELSDT VGSSGLRHLSG+ +LE++NLSFT ++DG LRKL+GL+SL+SLNLDARQI
Sbjct: 374 PLKSLELSDTIVGSSGLRHLSGIPHLENLNLSFTLVTDGGLRKLSGLTSLRSLNLDARQI 433

Query: 355 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 414
           TD GL ALTSLTGLT LDLFGARITDSG   L+ FKNL+SLEICGGGLTDAGVK+IKDL 
Sbjct: 434 TDAGLTALTSLTGLTRLDLFGARITDSGTNCLKYFKNLKSLEICGGGLTDAGVKNIKDLV 493

Query: 415 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 474
            LT+LNLSQN NLTDKTLELISGLT LVSLNVSNS IT+ GLR+LKPLKNLR+LTLESCK
Sbjct: 494 HLTVLNLSQNTNLTDKTLELISGLTELVSLNVSNSLITNEGLRYLKPLKNLRALTLESCK 553

Query: 475 VTANDIKRLQSRDLPNLVSFRPE 497
           VTA++IK+LQS +LPNL S RPE
Sbjct: 554 VTASEIKKLQSTELPNLASVRPE 576

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458869|ref|XP_003599715.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355488763|gb|AES69966.1| F-box/LRR-repeat protein [Medicago truncatula]

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/511 (74%), Positives = 424/511 (82%), Gaps = 14/511 (2%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQ------YPGVNDKWMDVIASQGSSLL 54
           MLPRDISQQI N LVYSR LT  SLEAFRDCALQ      Y GV+D WMDVI+SQGSSLL
Sbjct: 75  MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134

Query: 55  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 114
           SVDLS SDVTD GL +L+DC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDQISDHGLECISGLSNLTSLSFRRNDSIS 194

Query: 115 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 174
           AQGM AF+ L+NLVKLDLERC  IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS L 
Sbjct: 195 AQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSELA 254

Query: 175 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA--------LGSLFY 226
           +L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSLS         L +L  
Sbjct: 255 SLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSGCHEHTIPKLPALSN 314

Query: 227 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 286
           LNLNRC +SD GCE+FS++  LKVLNLGFN+I D CL H+KGLT LESLNLDSC IGDEG
Sbjct: 315 LNLNRCNISDRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLDSCKIGDEG 374

Query: 287 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 346
           L NL G   L CLELSDT+VG+ GL HLSGL++LE INLSFT +SD  LRKL GLSSLKS
Sbjct: 375 LENLAGHKQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKS 434

Query: 347 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 406
           LNLDA QITD GLA LTSLTGLT LDLFGARITD G  YL+ FKNLRSLEIC GGLTDAG
Sbjct: 435 LNLDAYQITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRSLEICSGGLTDAG 494

Query: 407 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 466
           VK+IK+LSSL  LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RITSAGL+HLK LKNLR
Sbjct: 495 VKNIKELSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLR 554

Query: 467 SLTLESCKVTANDIKRLQSRDLPNLVSFRPE 497
           SLTLESCKVTANDIK+ +   LPNLVSFRPE
Sbjct: 555 SLTLESCKVTANDIKKFKLIHLPNLVSFRPE 585

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|182407840|gb|ACB87911.1| F-box-containing protein 1 [Malus x domestica]

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/503 (74%), Positives = 441/503 (87%), Gaps = 6/503 (1%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQ------YPGVNDKWMDVIASQGSSLL 54
           MLPRD+SQQIFNELV S  LT+VSLEAFRDCAL+      YP V D WM VI+SQGSSLL
Sbjct: 78  MLPRDVSQQIFNELVCSNSLTDVSLEAFRDCALEDIGLGEYPDVKDSWMGVISSQGSSLL 137

Query: 55  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 114
           SVDLSGS+VTDSGL  LK CSNLQ+L +N+C  +S+ GL+H+ GLSNLTSLSF+R++AI+
Sbjct: 138 SVDLSGSEVTDSGLALLKGCSNLQALAYNYCDHVSEQGLKHISGLSNLTSLSFKRSDAIS 197

Query: 115 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 174
           A+GM+AF+GL+NL KLDLERC+ IHGG V+LKGL KL+SLN++ C CITDSD+K +SGL 
Sbjct: 198 AEGMRAFSGLLNLEKLDLERCSAIHGGFVHLKGLKKLKSLNVRCCRCITDSDLKTISGLI 257

Query: 175 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 234
           +L  LQ+S   +TDSGI+YLKGL KL +LNLEGC VTA+CL S+SAL +L YLNLNRC L
Sbjct: 258 DLNELQLSNCNITDSGISYLKGLHKLRMLNLEGCNVTASCLQSISALVALAYLNLNRCSL 317

Query: 235 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 294
           SD+GC+KFS + +LKVL+LGFNEITD CL++LKGLT+LESLNLDSC IGDEGL NL GL 
Sbjct: 318 SDEGCDKFSGLTNLKVLSLGFNEITDACLMYLKGLTSLESLNLDSCKIGDEGLANLAGLT 377

Query: 295 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 354
           +LK LELSDT+VGS+GLRHLSGL NLES+NLSFT ++D SL++L+GL+SLKSLNLDARQI
Sbjct: 378 HLKNLELSDTEVGSNGLRHLSGLKNLESLNLSFTLVTDSSLKRLSGLTSLKSLNLDARQI 437

Query: 355 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 414
           TD GLAA+TSLTGLTHLDLFGARI+DSGA +L+ FKNL+SLEICGGGLTDAGVK+IKDL 
Sbjct: 438 TDAGLAAITSLTGLTHLDLFGARISDSGANHLKYFKNLQSLEICGGGLTDAGVKNIKDLV 497

Query: 415 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 474
            LT LN+SQNCNLT+K+LELISGLT LVSLNVSNSRIT+ GL+HLKPLKNLRSLTLESCK
Sbjct: 498 CLTWLNISQNCNLTNKSLELISGLTALVSLNVSNSRITNEGLQHLKPLKNLRSLTLESCK 557

Query: 475 VTANDIKRLQSRDLPNLVSFRPE 497
           VTA++I++LQS  LPNLVSFRPE
Sbjct: 558 VTASEIRKLQSDALPNLVSFRPE 580

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500850|gb|AFK38491.1| unknown [Medicago truncatula]

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/503 (74%), Positives = 419/503 (83%), Gaps = 6/503 (1%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQ------YPGVNDKWMDVIASQGSSLL 54
           MLPRDISQQI N LVYSR LT  SLEAFRDCALQ      Y GV+D WMDVI+SQGSSLL
Sbjct: 75  MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134

Query: 55  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 114
           SVDLS SDVTD GL +L+DC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDQISDHGLECISGLSNLTSLSFRRNDSIS 194

Query: 115 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 174
           AQGM AF+ L+NLVKLDLERC  IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS L 
Sbjct: 195 AQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSELA 254

Query: 175 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 234
           +L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSLS L +L  LNLNRC +
Sbjct: 255 SLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSELPALSNLNLNRCNI 314

Query: 235 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 294
           S  GCE+FS++  LKVLNLGFN+I D CL H+KGLT LESLNLDSC IGDEGL NL G  
Sbjct: 315 SGRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLDSCKIGDEGLENLAGHK 374

Query: 295 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 354
            L CLELSDT+VG+ GL HLSGL++LE INLSFT +SD  LRKL GLSSLKSLNLDA QI
Sbjct: 375 QLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKSLNLDAYQI 434

Query: 355 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 414
           TD GLA LTSLTGLT LDLFGARITD G  YL+ FKNLR LEIC GGLTDAGVK+IK+LS
Sbjct: 435 TDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRPLEICSGGLTDAGVKNIKELS 494

Query: 415 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 474
           SL  LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RIT AGL+HLK LKNLR LTLESCK
Sbjct: 495 SLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITFAGLQHLKTLKNLRFLTLESCK 554

Query: 475 VTANDIKRLQSRDLPNLVSFRPE 497
           VT NDIK+ +   LPNLVSFRPE
Sbjct: 555 VTVNDIKKFKLIHLPNLVSFRPE 577

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468127|ref|XP_003604348.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355505403|gb|AES86545.1| F-box/LRR-repeat protein [Medicago truncatula]

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/505 (74%), Positives = 418/505 (82%), Gaps = 14/505 (2%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQ------YPGVNDKWMDVIASQGSSLL 54
           MLPRDISQQI N LVYSR LT  SLEAFRDCALQ      Y GV+D WMDVI+SQGSSLL
Sbjct: 75  MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134

Query: 55  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC--IQISDGGLEHLRGLSNLTSLSFRRNNA 112
           SVDLS SDVTD GL +L+DC +L SL+ N+C   QI D  L      SNLTSLSFRRN++
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDKFQIMDWSL------SNLTSLSFRRNDS 188

Query: 113 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 172
           I+AQGM AF+ L+NLVKLDLERC  IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS 
Sbjct: 189 ISAQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSE 248

Query: 173 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 232
           L +L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSLS L +L  LNLNRC
Sbjct: 249 LASLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSELPALSNLNLNRC 308

Query: 233 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 292
            +SD GCE+FS++  LKVLNLGFN+I D CL H+KGLT LESLNLDSC IGDEGL NL G
Sbjct: 309 NISDRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLDSCKIGDEGLENLAG 368

Query: 293 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 352
              L CLELSDT+VG+ GL HLSGL++LE INLSFT +SD  LRKL GLSSLKSLNLDA 
Sbjct: 369 HKQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKSLNLDAY 428

Query: 353 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 412
           QITD GLA LTSLTGLT LDLFGARITD G  YL+ FKNLRSLEIC GGLTDAGVK+IK+
Sbjct: 429 QITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRSLEICSGGLTDAGVKNIKE 488

Query: 413 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 472
           LSSL  LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RITSAGL+HLK LKNLRSLTLES
Sbjct: 489 LSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLRSLTLES 548

Query: 473 CKVTANDIKRLQSRDLPNLVSFRPE 497
           CKVTANDIK+ +   LPNLVSFRPE
Sbjct: 549 CKVTANDIKKFKLIHLPNLVSFRPE 573

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844484|ref|XP_002890123.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297335965|gb|EFH66382.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/503 (76%), Positives = 444/503 (88%), Gaps = 7/503 (1%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQ------YPGVNDKWMDVIASQGSSLLS 55
           LPRDISQQIF+ELVYS+ LT  SLEAFRDCA+Q      YPGVND WMDVI+SQ +SLLS
Sbjct: 76  LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLCLGEYPGVNDDWMDVISSQSTSLLS 135

Query: 56  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 115
           VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GLEHL GLSNLTSLSFRRN AITA
Sbjct: 136 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLEHLSGLSNLTSLSFRRNAAITA 195

Query: 116 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 175
           QGM+A + L+N+ KLDLE+C  IHGGLV+L+GL KLESLNIKWCNCITD+DM+PLS LTN
Sbjct: 196 QGMRALSNLVNMKKLDLEKCPGIHGGLVHLRGLTKLESLNIKWCNCITDADMEPLSELTN 255

Query: 176 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQL 234
           L+SLQI CS++TD GI+YLKGL KL LLNLEGC  VTAACLD+L+AL  L +LNLNRC  
Sbjct: 256 LRSLQICCSRITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALTGLMFLNLNRCNF 315

Query: 235 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 294
           SD GCEKFS + +LK+LNLG N IT+ CLVHL+GLT LESLNLDSC IGDEGLV+L+G+ 
Sbjct: 316 SDSGCEKFSDLINLKILNLGMNSITNSCLVHLRGLTKLESLNLDSCRIGDEGLVHLSGML 375

Query: 295 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 354
            LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D  LRKL+GL+SL++LNLDAR +
Sbjct: 376 ELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHV 435

Query: 355 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 414
           TD GL+ALTSLTGLTHLDLFGARITDSG  +LRN K L+SLEICGGGLTD GVK+IKDLS
Sbjct: 436 TDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDLS 495

Query: 415 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 474
           SLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S+GLRHLKPLKNLRSLTLESCK
Sbjct: 496 SLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESCK 555

Query: 475 VTANDIKRLQSRDLPNLVSFRPE 497
           ++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 556 LSANDIRKLQATDLPNLVNFRPE 578

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	497
TAIR|locus:2036199	585	AT1G15740 [Arabidopsis thalian	0.997	0.847	0.662	1.2e-170
TAIR|locus:2138131	597	AT4G23840 "AT4G23840" [Arabido	0.784	0.653	0.268	2.1e-19
UNIPROTKB|F1NMM1	345	FBXL14 "Uncharacterized protei	0.579	0.834	0.308	5e-17
FB|FBgn0020257	538	ppa "partner of paired" [Droso	0.509	0.470	0.308	2e-16
TAIR|locus:2143320	642	AT5G27920 "AT5G27920" [Arabido	0.782	0.605	0.294	2.2e-16
ZFIN|ZDB-GENE-030131-3556	400	fbxl14b "F-box and leucine-ric	0.474	0.59	0.314	5.1e-16
DICTYBASE|DDB_G0291424	902	DDB_G0291424 "Transcription fa	0.591	0.325	0.274	5.2e-16
ZFIN|ZDB-GENE-030131-5920	411	fbxl14a "F-box and leucine-ric	0.521	0.630	0.297	1.3e-15
UNIPROTKB|Q17R01	400	FBXL14 "F-box/LRR-repeat prote	0.434	0.54	0.294	3.6e-14
MGI|MGI:2141676	400	Fbxl14 "F-box and leucine-rich	0.434	0.54	0.294	3.6e-14

TAIR|locus:2036199 AT1G15740 [Arabidopsis thaliana (taxid:3702)]

 Score = 1659 (589.1 bits), Expect = 1.2e-170, P = 1.2e-170
 Identities = 333/503 (66%), Positives = 384/503 (76%)

Query:     2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQ------YPGVNDKWMDVIASQXXXXXX 55
             LPRDISQQIF+ELVYS+ LT  SLEAFRDCA+Q      YPGVND WMDVI+SQ      
Sbjct:    83 LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLYLGEYPGVNDDWMDVISSQSTSLLS 142

Query:    56 XXXXXXXXXXXXXIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 115
                          + LK C+NL+SL+FNFC QIS+ GL HL GLSNLTSLSFRRN AITA
Sbjct:   143 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAITA 202

Query:   116 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 175
             QGM+A + L+NL KLDLE+C  I GGLV+L+ L KLESLNIKWCNCITD+DM+PLS LTN
Sbjct:   203 QGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEPLSVLTN 262

Query:   176 LKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCP-VTAACLDSLSALGSLFYLNLNRCQL 234
             L+SLQI CSK+TD GI+Y            EGC  VTAACLD+L+AL  L YLNLNRC  
Sbjct:   263 LRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRCNF 322

Query:   235 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 294
             SD GCEKFS + +LK+LNLG N IT+ CLVHLKGLT LESLNLDSC IGDEGLV+L+G+ 
Sbjct:   323 SDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGML 382

Query:   295 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 354
              LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D  LRKL+GL+SL++LNLDAR +
Sbjct:   383 ELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHV 442

Query:   355 XXXXXXXXXXXXXXXXXDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDXX 414
                              DLFGARITDSG  +LRN K L+SLEICGGGLTD GVK+IKD  
Sbjct:   443 TDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDLS 502

Query:   415 XXXXXXXXXXXXXTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 474
                          TDKTLELISGLTGLVSLNVSNSR++S+GLRHLKPLKNLRSLTLESCK
Sbjct:   503 SLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESCK 562

Query:   475 VTANDIKRLQSRDLPNLVSFRPE 497
             ++ANDI++LQ+ DLPNLV+FRPE
Sbjct:   563 LSANDIRKLQATDLPNLVNFRPE 585

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2138131 AT4G23840 "AT4G23840" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 2.1e-19, P = 2.1e-19
 Identities = 118/439 (26%), Positives = 188/439 (42%)

Query:    76 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 135
             NL +L+ + C +I+   L  + GL++LT L   R   +T  GMK    ++NL KL + + 
Sbjct:    87 NLITLNLSDCQRINSSTLWPITGLTSLTELDLSRCFKVTDAGMKHLQSVVNLKKLWISQT 146

Query:   136 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXX 195
                  G+  L  L KL  L++     +TD ++  L  LT L+ L I  S VT+ G     
Sbjct:   147 GVTEVGISLLASLKKLSLLDLGGLP-VTDQNLISLQALTKLEYLDIWGSNVTNQGAVSIL 205

Query:   196 XXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG- 254
                           +T         +  L  L++N C +  +  +  S + SLK L L  
Sbjct:   206 KFSNLSFLNLSWTSITQT-----PNIPHLECLHMNTCTIVSEP-KTHSSLASLKKLVLSG 259

Query:   255 --FNEITDE-------CLVHL-------KGLT------NLESLNLDSCGIGDE--GLVNL 290
               F+  T+        C+ +L       K  +      NLE L+L S   GD+  G V  
Sbjct:   260 ANFSAETESLSFTNKSCITYLDVSKTSLKNFSFLETMFNLEHLDLSSTAFGDDSVGFVAC 319

Query:   291 TGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAG-LSSLKSLN 348
              G  NLK L +SDTQ+  SG+ +L+G +  LE++++S T + D S+  ++  +  +K+L+
Sbjct:   320 VGE-NLKNLNVSDTQITPSGVGNLAGHVPQLETLSMSQTFVDDLSILLISTTMPCIKALD 378

Query:   349 LDARQIXXXXXXXXXXXXXXXXXDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 408
             L                              +   A L++  +L +L +    L D  + 
Sbjct:   379 LGMNSTLGFYYLISPQEEK------------EKSLAALQSLTSLETLSLEHPYLGDKALS 426

Query:   409 HIKDXXXXXXXXXXXXXXXTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 468
              +                 TD TL  +S L  LVSL V +  +TS GL   +P   LR+L
Sbjct:   427 GLSSLTGLTHLSLTSTSL-TDSTLHHLSSLPNLVSLGVRDGVLTSNGLEKFRPPNRLRTL 485

Query:   469 TLESC-KVTANDIKRLQSR 486
              L+ C  +T +DI  L  R
Sbjct:   486 DLQGCWLLTKDDIAGLCKR 504

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1NMM1 FBXL14 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 229 (85.7 bits), Expect = 5.0e-17, P = 5.0e-17
 Identities = 100/324 (30%), Positives = 155/324 (47%)

Query:    96 LRGLSNLTSLSFRRNNAITAQGM-KAF-AGLINLVKLDLERCTRI-HGGLVNLKGLMK-L 151
             ++G++++ SL+      +T  G+  AF A + +L  L+L  C +I    L  +   +K L
Sbjct:    19 IQGMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIAQYLKGL 78

Query:   152 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQI-SCSKVTDSGIAYXXXXXXXXXXXXEGCP 209
             E L +  C+ IT++ +  ++ GL  LKSL + SC  ++D GI +            EGC 
Sbjct:    79 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAA---EGC- 134

Query:   210 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHL 266
                        LG L  L L  CQ LSD   +  ++ +G L+ LNL F   I+D  L+HL
Sbjct:   135 -----------LG-LEQLTLQDCQKLSDLSIKHLARGLGRLRQLNLSFCGGISDAGLLHL 182

Query:   267 KGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLES 322
               +++L SLNL SC  I D G+++L  G   L  L++S   +VG   L +++ GL  L S
Sbjct:   183 SHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRS 242

Query:   323 INLSFTGISD-GSLRKLAGLSSLKSLNLD--ARQIXXXXXXXXXXXXXXXXXDLFGA-RI 378
             ++L    ISD G  R +  +  L++LN+    R                   DL+G  RI
Sbjct:   243 LSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRI 302

Query:   379 TDSGAAYLRNFKNLRSLEICGGGL 402
             T  G   L     L  L++   GL
Sbjct:   303 TKRG---LERITQLPCLKVLNLGL 323

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

FB|FBgn0020257 ppa "partner of paired" [Drosophila melanogaster (taxid:7227)]

 Score = 231 (86.4 bits), Expect = 2.0e-16, P = 2.0e-16
 Identities = 92/298 (30%), Positives = 150/298 (50%)

Query:    73 DCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKL 130
             D  NL++LD + C QI+D  L  + + L NL +L       IT  G+   A GL  L  L
Sbjct:   259 DLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHL 318

Query:   131 DLERCTRIHG-GLVNLKGL--------MKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQ 180
             +L  C  I   G+ +L G         ++LE L ++ C  ++D  +  ++ GLT+LKS+ 
Sbjct:   319 NLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSIN 378

Query:   181 IS-CSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDG 238
             +S C  VTDSG+ +                        L+ +  L  LNL  C  +SD G
Sbjct:   379 LSFCVSVTDSGLKH------------------------LARMPKLEQLNLRSCDNISDIG 414

Query:   239 CEKFSKIGS-LKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-GLC 294
                 ++ GS +  L++ F ++I+D+ L H+ +GL  L SL+L+ C I D G++ +   L 
Sbjct:   415 MAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALH 474

Query:   295 NLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 349
              L+ L +   +++   GL+ L+  LTNL++I+L   T +S   +  +  L  L+ LNL
Sbjct:   475 ELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 532

GO:0000152 "nuclear ubiquitin ligase complex" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=NAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=NAS

TAIR|locus:2143320 AT5G27920 "AT5G27920" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 2.2e-16, P = 2.2e-16
 Identities = 133/451 (29%), Positives = 210/451 (46%)

Query:    74 CSNLQSLDFNFCIQISDGGLEHL----RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 129
             CSNL  +   +C++ISD G++ L    +GL +L  +S+ +   IT   +++ A L+ L  
Sbjct:   171 CSNLNKISLKWCMEISDLGIDLLCKICKGLKSL-DVSYLK---ITNDSIRSIALLVKLEV 226

Query:   130 LDLERCTRIH-GGLVNLK-GLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-C-S 184
             LD+  C  I  GGL  L+ G   L+ +++  C+ ++ S +  +  G  +++ L+ S C S
Sbjct:   227 LDMVSCPLIDDGGLQFLENGSPSLQEVDVTRCDRVSLSGLISIVRGHPDIQLLKASHCVS 286

Query:   185 KVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSA-LGSLFYLNLNRC-QLSDDGCEKF 242
             +V+ S + Y            +G  V+ + L SLS+   SL  + L+RC  ++D G    
Sbjct:   287 EVSGSFLKYIKGLKHLKTIWIDGAHVSDSSLVSLSSSCRSLMEIGLSRCVDVTDIGMISL 346

Query:   243 SK-IGSLKVLNL---GFNEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNL 296
             ++   +LK LNL   GF  +TD  +  + +   NL +L L+SC  I ++GL +L     L
Sbjct:   347 ARNCLNLKTLNLACCGF--VTDVAISAVAQSCRNLGTLKLESCHLITEKGLQSLGCYSML 404

Query:   297 -KCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQ 353
              + L+L+D   V   GL ++S  +NL+ + L   T ISD  +  +    S K L LD  +
Sbjct:   405 VQELDLTDCYGVNDRGLEYISKCSNLQRLKLGLCTNISDKGIFHIGSKCS-KLLELDLYR 463

Query:   354 IXXXXXXXXXXXXXXXXXDLFGARITDSGAAYL-RNFKNLRSLEI--CGGGLTDAGVKHI 410
                                 FG    D G A L R  K+L  L +  C   LTD GV+ I
Sbjct:   464 CAG-----------------FG----DDGLAALSRGCKSLNRLILSYCCE-LTDTGVEQI 501

Query:   411 KDXXXXXXXXXXXXXXXTDKTLELI-SGLTGLVSLNVSN-SRITSAGLRHLKPL-KNLRS 467
             +                T   L  I SG   L  L+V     I  +G   L    KNLR 
Sbjct:   502 RQLELLSHLELRGLKNITGVGLAAIASGCKKLGYLDVKLCENIDDSGFWALAYFSKNLRQ 561

Query:   468 LTLESCKV--TA-----NDIKRLQSRDLPNL 491
             + L +C V  TA     +++ R+Q  DL +L
Sbjct:   562 INLCNCSVSDTALCMLMSNLSRVQDVDLVHL 592

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009407 "toxin catabolic process" evidence=RCA

ZFIN|ZDB-GENE-030131-3556 fbxl14b "F-box and leucine-rich repeat protein 14b" [Danio rerio (taxid:7955)]

 Score = 224 (83.9 bits), Expect = 5.1e-16, P = 5.1e-16
 Identities = 83/264 (31%), Positives = 133/264 (50%)

Query:    97 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI--HG-GLVNLKGLMKLES 153
             RG+  +  LS RR+ +   QGM       N+  L+L  C  +  +G G   ++ +  L  
Sbjct:    68 RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121

Query:   154 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYXX-XXXXXXXXXXEGCP- 209
             LN+  C  ITDS +  ++  L NL+ L++  CS +T++G+                 C  
Sbjct:   122 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRH 181

Query:   210 VTAACLDSLSAL------G--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 258
             V+   +  L+ +      G  SL YL L  CQ L+D   +  SK +  LKVLNL F   I
Sbjct:   182 VSDVGIGHLAGMTRSAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKVLNLSFCGGI 241

Query:   259 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS 315
             +D  ++HL  +T+L SLNL SC  I D G+++L  G   L  L++S   ++G   L +++
Sbjct:   242 SDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLAYIA 301

Query:   316 -GLTNLESINLSFTGISDGSLRKL 338
              GL  L+S++L    ISD  + ++
Sbjct:   302 QGLYQLKSLSLCSCHISDDGINRM 325

GO:0004842 "ubiquitin-protein ligase activity" evidence=IC

GO:0019005 "SCF ubiquitin ligase complex" evidence=IPI

GO:0016567 "protein ubiquitination" evidence=IC

DICTYBASE|DDB_G0291424 DDB_G0291424 "Transcription factor SKN7" [Dictyostelium discoideum (taxid:44689)]

 Score = 231 (86.4 bits), Expect = 5.2e-16, P = 5.2e-16
 Identities = 87/317 (27%), Positives = 133/317 (41%)

Query:     2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQ----YP---GVNDKWMDVIAS--QXXX 52
             LP ++ Q+I       + L+  +L  FR+C L     Y     +ND+W+++     +   
Sbjct:   381 LPDELCQKIIPLFQRRKILSLKTLSLFRNCKLSRLELYGKEIAINDEWLNITKGLMKSTL 440

Query:    53 XXXXXXXXXXXXXXXXIHLKDCSNLQSLDFNFCIQISDGGLEHL--RGLSNLTSLSFRRN 110
                               L   + L SLD ++C +I   GLE L   G+  L  L    N
Sbjct:   441 SSINISKNNSLTDQGIASLSSLAKLSSLDISYCEKIDGTGLEPLVDAGVP-LQKLHMEGN 499

Query:   111 NAITAQGMKAFAGLINLVKLDLERC---TRIHGGLVN-LKGLMKLESLNIKWCNCITDSD 166
             +++    +K F  L  L  L+   C   T I   +   L  L  L  L++     + +  
Sbjct:   500 SSLNL--VKVFNSLSKLKTLN-SLCVGNTNITDDMCKPLSLLTTLTHLDVARNTQLGNQG 556

Query:   167 MKPLSGLTNLKSLQISC-SKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLF 225
             ++ +S   NL  L ISC +K+   GI +            E C +    +  +  L SL 
Sbjct:   557 LESISKCVNLIDLDISCCTKINALGIRHLGSLSNLQSLSAENCAIDDESMKYIGTLKSLS 616

Query:   226 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IG 283
              L+L     SD G +    +  L  L+L     ITD  LVH K LT +  LNL+ CG + 
Sbjct:   617 SLSLINNPFSDTGAKNIGNLTLLTTLDLSMCANITDAALVHFKNLTQISKLNLNFCGNLT 676

Query:   284 DEGLVNLTG-LCNLKCL 299
             D G+ +LTG L  LK L
Sbjct:   677 DSGVTSLTGGLGQLKTL 693

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0000156 "phosphorelay response regulator activity" evidence=IEA

ZFIN|ZDB-GENE-030131-5920 fbxl14a "F-box and leucine-rich repeat protein 14a" [Danio rerio (taxid:7955)]

 Score = 221 (82.9 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 91/306 (29%), Positives = 151/306 (49%)

Query:    71 LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLV 128
             ++D  +L+ L+ + C QI+D  L  + + L NL  L     + IT  G+   A GL NL 
Sbjct:   113 VQDIPSLRILNLSLCKQITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLK 172

Query:   129 KLDLERCTRIHG-GLVNLKGLMK--------LESLNIKWCNCITDSDMKPLS-GLTNLKS 178
              L+L  C  +   G+ +L G+ +        LE L ++ C  +TD  +K +S GL  LK 
Sbjct:   173 SLNLRSCRHVSDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKV 232

Query:   179 LQIS-CSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSD 236
             L +S C  ++D+G+ +                        LS +  L+ LNL  C  +SD
Sbjct:   233 LNLSFCGGISDAGMIH------------------------LSHMTQLWTLNLRSCDNISD 268

Query:   237 DGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTG 292
              G    S +G+L++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+  +  
Sbjct:   269 TGIMHLS-MGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVR 327

Query:   293 -LCNLKCLELSD-TQVGSSGLRHLSG-LTNLESINL-SFTGISDGSLRKLAGLSSLKSLN 348
              +  LK L +    ++   GL  ++  LT L  I+L   T I+   L ++  L  LK LN
Sbjct:   328 QMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLN 387

Query:   349 LDARQI 354
             L   Q+
Sbjct:   388 LGLWQM 393

GO:0019005 "SCF ubiquitin ligase complex" evidence=IPI

GO:0004842 "ubiquitin-protein ligase activity" evidence=IC

GO:0016567 "protein ubiquitination" evidence=IC

UNIPROTKB|Q17R01 FBXL14 "F-box/LRR-repeat protein 14" [Bos taurus (taxid:9913)]

 Score = 208 (78.3 bits), Expect = 3.6e-14, P = 3.6e-14
 Identities = 70/238 (29%), Positives = 127/238 (53%)

Query:    71 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 127
             ++  +N++SL+ + C  ++D GL H  ++ + +L +L+      IT   +   A  +  L
Sbjct:    86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query:   128 VKLDLERCTRI-HGGLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 177
               L+L  C+ I + GL+ +  GL +L+SLN++ C  ++D  +  L+G+T         L+
Sbjct:   146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205

Query:   178 SLQIS-CSKVTDSGIAYXXXXXXXXXXXXEG-CP-VTAACLDSLSALGSLFYLNLNRCQ- 233
              L +  C K+TD  + +               C  ++ A L  LS +GSL  LNL  C  
Sbjct:   206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265

Query:   234 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL 287
             +SD G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+
Sbjct:   266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS

MGI|MGI:2141676 Fbxl14 "F-box and leucine-rich repeat protein 14" [Mus musculus (taxid:10090)]

 Score = 208 (78.3 bits), Expect = 3.6e-14, P = 3.6e-14
 Identities = 70/238 (29%), Positives = 127/238 (53%)

Query:    71 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 127
             ++  +N++SL+ + C  ++D GL H  ++ + +L +L+      IT   +   A  +  L
Sbjct:    86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query:   128 VKLDLERCTRI-HGGLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 177
               L+L  C+ I + GL+ +  GL +L+SLN++ C  ++D  +  L+G+T         L+
Sbjct:   146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205

Query:   178 SLQIS-CSKVTDSGIAYXXXXXXXXXXXXEG-CP-VTAACLDSLSALGSLFYLNLNRCQ- 233
              L +  C K+TD  + +               C  ++ A L  LS +GSL  LNL  C  
Sbjct:   206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265

Query:   234 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL 287
             +SD G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+
Sbjct:   266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00003249001	SubName- Full=Chromosome undetermined scaffold_141, whole genome shotgun sequence; (578 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00037306001	SubName- Full=Chromosome undetermined scaffold_87, whole genome shotgun sequence; (446 aa)			•						0.412

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	497
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-06
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	5e-06
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	8e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	9e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-05
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	3e-04
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	6e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	8e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 68/252 (26%), Positives = 100/252 (39%), Gaps = 46/252 (18%)

Query: 200 LTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGC---EKFSKIGSLKVLNLGF 255
           L+L      P    + L  L+    L  L+L+   L  DGC   E   +  SL+ L L  
Sbjct: 58  LSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNN 117

Query: 256 NEITDECLVHL-KGLT----NLESLNLDSCGIGDEGLVNLTGL----CNLKCLELSDTQV 306
           N + D  L  L KGL      LE L L    +       L        +LK L L++  +
Sbjct: 118 NGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177

Query: 307 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT--- 363
           G +G+R L                       L    +L+ L+L+   +TD G +AL    
Sbjct: 178 GDAGIRAL--------------------AEGLKANCNLEVLDLNNNGLTDEGASALAETL 217

Query: 364 -SLTGLTHLDLFGARITDSGAAYLRN-----FKNLRSLEICGGGLTDAGVKH----IKDL 413
            SL  L  L+L    +TD+GAA L +       +L +L +    +TD G K     + + 
Sbjct: 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK 277

Query: 414 SSLTLLNLSQNC 425
            SL  L+L  N 
Sbjct: 278 ESLLELDLRGNK 289

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.5 bits (126), Expect = 4e-07
 Identities = 62/235 (26%), Positives = 105/235 (44%)

Query: 169 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 228
           P   + NL++L +S + ++      +     L +L+L G  +     +SL+ L SL +L 
Sbjct: 135 PRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194

Query: 229 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 288
           L   QL      +  ++ SLK + LG+N ++ E    + GLT+L  L+L    +      
Sbjct: 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254

Query: 289 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 348
           +L  L NL+ L L   ++       +  L  L S++LS   +S      +  L +L+ L+
Sbjct: 255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314

Query: 349 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 403
           L +   T     ALTSL  L  L L+  + +      L    NL  L++    LT
Sbjct: 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 62/254 (24%), Positives = 121/254 (47%), Gaps = 3/254 (1%)

Query: 223 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 282
           SL YLNL+    +  G      I +L+ L+L  N ++ E    +   ++L+ L+L    +
Sbjct: 119 SLRYLNLSNNNFT--GSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176

Query: 283 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 342
             +   +LT L +L+ L L+  Q+     R L  + +L+ I L +  +S     ++ GL+
Sbjct: 177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT 236

Query: 343 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 402
           SL  L+L    +T    ++L +L  L +L L+  +++      + + + L SL++    L
Sbjct: 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296

Query: 403 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 462
           +    + +  L +L +L+L  N N T K    ++ L  L  L + +++ +    ++L   
Sbjct: 297 SGEIPELVIQLQNLEILHLFSN-NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355

Query: 463 KNLRSLTLESCKVT 476
            NL  L L +  +T
Sbjct: 356 NNLTVLDLSTNNLT 369

Length = 968

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 11/163 (6%)

Query: 295 NLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNLDA- 351
            L+ LEL    +    L  LS    L+ + L     I D  L  LA    +L+ L+L A 
Sbjct: 29  GLEWLELYMCPISDPPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRAC 88

Query: 352 RQITDTGLAAL-TSLTGLTHLDL----FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 405
             ITD+G+ AL T+   L  ++L     G  ITD   + L +N   L+++   G  +TD 
Sbjct: 89  ENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCDVTDK 148

Query: 406 GVKHIKDLSSLTLLNLSQN-C-NLTDKTLELISGLTGLVSLNV 446
           GV  +    S +L  LS N C NLTD+++  I       +L+V
Sbjct: 149 GVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSV 191

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 40/214 (18%)

Query: 184 SKVTDSGIAYLKGL--QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 241
            ++T S I+ L  +    L  L L  CP++   LD LS    L  L L   +L       
Sbjct: 12  GQITQSNISQLLRILHSGLEWLELYMCPISDPPLDQLSNCNKLKKLILPGSKL------- 64

Query: 242 FSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKC 298
                           I DE L+ L +   NL+ L+L +C  I D G+V L   C  L+ 
Sbjct: 65  ----------------IDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQT 108

Query: 299 LELSDTQVGSS----GLRHLSGL-TNLESINLSFTGISDGSLRKLAGLSS--LKSLNLD- 350
           + L   + G       L  L    T L+++  +   ++D  + +LA   S  L+ L+L+ 
Sbjct: 109 INLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCDVTDKGVWELASGCSKSLERLSLNN 168

Query: 351 ARQITDTGLAALTSLTGLTHLDLF----GARITD 380
            R +TD  + A+ +     +L +        ITD
Sbjct: 169 CRNLTDQSIPAILASNYFPNLSVLEFRGCPLITD 202

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.4 bits (113), Expect = 9e-06
 Identities = 69/254 (27%), Positives = 106/254 (41%), Gaps = 36/254 (14%)

Query: 265 HLKGLTNLESLNLDSCGIGDEGLV----NLTGLCNLKCLELSDTQVGS---------SGL 311
            L  L  L+ L L+   +G+E        L    +LK L LS  + G           GL
Sbjct: 18  LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL 77

Query: 312 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA----ALTSLT- 366
               GL  L+  + +      G L  L   SSL+ L L+   + D GL      L  L  
Sbjct: 78  TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP 137

Query: 367 GLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTL 418
            L  L L   R+  +     A  LR  ++L+ L +   G+ DAG++ +    K   +L +
Sbjct: 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEV 197

Query: 419 LNLSQNCNLTDKTL----ELISGLTGLVSLNVSNSRITSAGLRHL-----KPLKNLRSLT 469
           L+L  N  LTD+      E ++ L  L  LN+ ++ +T AG   L      P  +L +L+
Sbjct: 198 LDL-NNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLS 256

Query: 470 LESCKVTANDIKRL 483
           L    +T +  K L
Sbjct: 257 LSCNDITDDGAKDL 270

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.3 bits (115), Expect = 9e-06
 Identities = 80/355 (22%), Positives = 146/355 (41%), Gaps = 33/355 (9%)

Query: 99  LSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 156
           L NL +L   F   N ++     +   L  L+ LDL     + G +  L  +++L++L I
Sbjct: 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD-NSLSGEIPEL--VIQLQNLEI 312

Query: 157 K--WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 214
              + N  T      L+ L  L+ LQ+  +K +      L     LT+L+L    +T   
Sbjct: 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372

Query: 215 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 274
            + L + G+LF L L    L  +  +      SL+ + L  N  + E       L  +  
Sbjct: 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF 432

Query: 275 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 334
           L++ +         NL G  N +  ++                 +L+ ++L+      G 
Sbjct: 433 LDISNN--------NLQGRINSRKWDM----------------PSLQMLSLARNKFF-GG 467

Query: 335 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 394
           L    G   L++L+L   Q +      L SL+ L  L L   +++      L + K L S
Sbjct: 468 LPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVS 527

Query: 395 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 449
           L++    L+        ++  L+ L+LSQN  L+ +  + +  +  LV +N+S++
Sbjct: 528 LDLSHNQLSGQIPASFSEMPVLSQLDLSQN-QLSGEIPKNLGNVESLVQVNISHN 581

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 57/219 (26%), Positives = 87/219 (39%), Gaps = 43/219 (19%)

Query: 93  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL---INLVKLDLERCTRIHGGLVNL-KGL 148
           L+ L     L  L    +NA+   G      L    +L +L L        GL  L KGL
Sbjct: 74  LQGLTKGCGLQELD-LSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL 132

Query: 149 ----MKLESLNIKWCNCITDSDMKPLSGL----TNLKSLQISCSKVTDSGIAYLKGLQKL 200
                 LE L +   N +  +  + L+       +LK L ++ + + D+GI  L      
Sbjct: 133 KDLPPALEKL-VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA----- 186

Query: 201 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFN 256
                          + L A  +L  L+LN   L+D+G     E  + + SL+VLNLG N
Sbjct: 187 ---------------EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231

Query: 257 EITDECLVHL-----KGLTNLESLNLDSCGIGDEGLVNL 290
            +TD     L         +L +L+L    I D+G  +L
Sbjct: 232 NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDL 270

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 9/102 (8%)

Query: 18  RCLTEVSLEAFRDCALQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL--KDCS 75
             L  ++L   R+  L    + D  +  +    + L +V  +G DVTD G+  L      
Sbjct: 104 PKLQTINLGRHRNGHL----ITDVSLSALGKNCTFLQTVGFAGCDVTDKGVWELASGCSK 159

Query: 76  NLQSLDFNFCIQISDGGLEHLRGLS---NLTSLSFRRNNAIT 114
           +L+ L  N C  ++D  +  +   +   NL+ L FR    IT
Sbjct: 160 SLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCPLIT 201

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 25/160 (15%)

Query: 162 ITDSDMKPLSGL--TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSL 218
           IT S++  L  +  + L+ L++    ++D  +  L    KL  L L G   +    L +L
Sbjct: 14  ITQSNISQLLRILHSGLEWLELYMCPISDPPLDQLSNCNKLKKLILPGSKLIDDEGLIAL 73

Query: 219 -SALGSLFYLNLNRC-QLSDDG-------CEKFSKIGSLKVLNLGFNE----ITDECLVH 265
             +  +L  L+L  C  ++D G       C K      L+ +NLG +     ITD  L  
Sbjct: 74  AQSCPNLQVLDLRACENITDSGIVALATNCPK------LQTINLGRHRNGHLITDVSLSA 127

Query: 266 L-KGLTNLESLNLDSCGIGDEGLVNLTGLC--NLKCLELS 302
           L K  T L+++    C + D+G+  L   C  +L+ L L+
Sbjct: 128 LGKNCTFLQTVGFAGCDVTDKGVWELASGCSKSLERLSLN 167

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 52/207 (25%), Positives = 78/207 (37%), Gaps = 31/207 (14%)

Query: 296 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR----KLAGLSSLKSLNLDA 351
           LK   L   +        L  L  L+ + L    + + + +     L    SLK L L  
Sbjct: 5   LKGELLKTERAT----ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSL 60

Query: 352 RQ------ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC---GGGL 402
            +         + L  LT   GL  LDL    +   G   L +     SL+       GL
Sbjct: 61  NETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL 120

Query: 403 TDAGVKHI----KDLS-SLTLLNLSQNCNLTDKTLELISGL----TGLVSLNVSNSRITS 453
            D G++ +    KDL  +L  L L +N  L   + E ++        L  LN++N+ I  
Sbjct: 121 GDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNGIGD 179

Query: 454 AGLRHLKP----LKNLRSLTLESCKVT 476
           AG+R L        NL  L L +  +T
Sbjct: 180 AGIRALAEGLKANCNLEVLDLNNNGLT 206

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 391 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 450
           NL+SL++    LT       K L +L +L+LS N NLT  + E  SGL  L SL++S + 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN-NLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 451 I 451
           +
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	497
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.93
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.93
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.93
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.93
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.91
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.84
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.81
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.76
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.72
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.63
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.6
KOG4341	483	consensus F-box protein containing LRR [General fu	99.58
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.53
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.52
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.48
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.45
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.45
KOG4341	483	consensus F-box protein containing LRR [General fu	99.42
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.4
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.33
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.28
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.26
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.23
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.09
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.07
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.01
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.99
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.97
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.96
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.9
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.89
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.64
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.63
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.59
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.57
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.57
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.56
PLN03150	623	hypothetical protein; Provisional	98.55
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.5
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.49
PLN03150	623	hypothetical protein; Provisional	98.44
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.34
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.3
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.29
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.26
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.25
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.23
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.11
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.99
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.9
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.73
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.73
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.63
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.5
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.49
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.48
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.42
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.41
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.21
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.15
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.12
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.07
PRK15386	426	type III secretion protein GogB; Provisional	97.05
KOG4308	478	consensus LRR-containing protein [Function unknown	96.94
PRK15386	426	type III secretion protein GogB; Provisional	96.82
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.65
KOG4308	478	consensus LRR-containing protein [Function unknown	96.62
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.71
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	94.26
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	93.44
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.21
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	92.05
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.62
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	90.62
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	87.38
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	82.12
smart00370	26	LRR Leucine-rich repeats, outliers.	82.12

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=9.2e-44  Score=378.17  Aligned_cols=437  Identities=22%  Similarity=0.229  Sum_probs=239.9

Q ss_pred             cCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCC
Q 010952           49 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV  128 (497)
Q Consensus        49 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  128 (497)
                      .+++|++|+++++.+.+..+.  +.+++|++|++++| .+....+..++.+++|++|++++|. +....|..++++++|+
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~  191 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNN-MLSGEIPNDIGSFSSLKVLDLGGNV-LVGKIPNSLTNLTSLE  191 (968)
T ss_pred             cCCCCCEEECcCCccccccCc--cccCCCCEEECcCC-cccccCChHHhcCCCCCEEECccCc-ccccCChhhhhCcCCC
Confidence            566777777777666543332  34566666666665 4444455566666666666666665 3444555666666666


Q ss_pred             EEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCC
Q 010952          129 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC  208 (497)
Q Consensus       129 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  208 (497)
                      +|++++|......+..+.++++|++|++++|. +....+..+..+++|++|++++|.+....+..+.++++|++|++++|
T Consensus       192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  270 (968)
T PLN00113        192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNN-LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN  270 (968)
T ss_pred             eeeccCCCCcCcCChHHcCcCCccEEECcCCc-cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence            66666654443445555666666666666533 33334455556666666666666555555555566666666666666


Q ss_pred             CCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHH
Q 010952          209 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV  288 (497)
Q Consensus       209 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~  288 (497)
                      .+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+.
T Consensus       271 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~  350 (968)
T PLN00113        271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK  350 (968)
T ss_pred             eeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh
Confidence            55554555555556666666666555554555555555555555555555544444455555555555555554444444


Q ss_pred             HHhCCCCCCEeeccCcccch------------------------HHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCC
Q 010952          289 NLTGLCNLKCLELSDTQVGS------------------------SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL  344 (497)
Q Consensus       289 ~l~~~~~L~~L~l~~~~~~~------------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  344 (497)
                      .+..+++|+.|++++|.+..                        ..+..+..+++|+.|++++|.+....+..+.++++|
T Consensus       351 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L  430 (968)
T PLN00113        351 NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV  430 (968)
T ss_pred             HHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC
Confidence            44445555555555444433                        333334444555555555554443344444455555


Q ss_pred             cEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952          345 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  424 (497)
Q Consensus       345 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  424 (497)
                      +.|++++|.++...+..+..+++|+.|++++|.+.+..|..+ ..++|+.|++++|++.+..+..+..+++|+.|++++|
T Consensus       431 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  509 (968)
T PLN00113        431 YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN  509 (968)
T ss_pred             CEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCC
Confidence            555555554444333333344455555555554443333222 2345555555555555555555555666666666666


Q ss_pred             CCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCHHHHHHHhhcCCCCCccC
Q 010952          425 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF  494 (497)
Q Consensus       425 ~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p~L~~l  494 (497)
                       .+....|..+.++++|+.|++++|.+++..+..+..+++|+.|++++|.++......+.  .+++|+.+
T Consensus       510 -~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~l  576 (968)
T PLN00113        510 -KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG--NVESLVQV  576 (968)
T ss_pred             -cceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHh--cCcccCEE
Confidence             55555555566666666666666666665556666666666666666666554444443  34444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.3e-43  Score=377.11  Aligned_cols=442  Identities=20%  Similarity=0.194  Sum_probs=353.2

Q ss_pred             HHhcCCceeEEEeeCCCCChHHHHHh-cCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCC
Q 010952           46 IASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL  124 (497)
Q Consensus        46 ~~~~~~~l~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l  124 (497)
                      ....+++|++|+++++.+.+..|..+ ..+.+|++|++++| .+.+..+  ...+++|++|++++|. +....|..++++
T Consensus        88 ~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p--~~~l~~L~~L~Ls~n~-~~~~~p~~~~~l  163 (968)
T PLN00113         88 AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIP--RGSIPNLETLDLSNNM-LSGEIPNDIGSF  163 (968)
T ss_pred             HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-ccccccC--ccccCCCCEEECcCCc-ccccCChHHhcC
Confidence            34568999999999999887777665 49999999999998 4544332  2568999999999997 466778899999


Q ss_pred             CCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEE
Q 010952          125 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN  204 (497)
Q Consensus       125 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  204 (497)
                      ++|++|++++|......+..+.++++|++|++++|. +....+..+..+++|+.|++++|.+....+..+.++++|++|+
T Consensus       164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  242 (968)
T PLN00113        164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ-LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD  242 (968)
T ss_pred             CCCCEEECccCcccccCChhhhhCcCCCeeeccCCC-CcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence            999999999986666677889999999999999865 4445678889999999999999999988888999999999999


Q ss_pred             ccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCH
Q 010952          205 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD  284 (497)
Q Consensus       205 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~  284 (497)
                      +++|.+.+..+..++++++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++.+|.+..
T Consensus       243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~  322 (968)
T PLN00113        243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG  322 (968)
T ss_pred             CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence            99999988888899999999999999999887778888899999999999999887777788899999999999998887


Q ss_pred             hHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcC
Q 010952          285 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS  364 (497)
Q Consensus       285 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  364 (497)
                      ..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++.+|.+....+..+..
T Consensus       323 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~  402 (968)
T PLN00113        323 KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA  402 (968)
T ss_pred             cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhC
Confidence            77788889999999999999988777778888899999999988776555555656666666666666665544555555


Q ss_pred             CCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhh-----------------------cCCCCeecc
Q 010952          365 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD-----------------------LSSLTLLNL  421 (497)
Q Consensus       365 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~-----------------------l~~L~~L~l  421 (497)
                      +++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..+..+..                       .++|+.|++
T Consensus       403 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~l  482 (968)
T PLN00113        403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDL  482 (968)
T ss_pred             CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEEC
Confidence            666666666666555544545555555555555555544433322222                       356667777


Q ss_pred             cCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCHHHHHHHhhcCCCCCccCC
Q 010952          422 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR  495 (497)
Q Consensus       422 ~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p~L~~l~  495 (497)
                      ++| .+++..+..+..+++|+.|++++|.+.+..++.+..+++|+.|++++|.++......+.  .+++|+.|.
T Consensus       483 s~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~  553 (968)
T PLN00113        483 SRN-QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS--EMPVLSQLD  553 (968)
T ss_pred             cCC-ccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh--CcccCCEEE
Confidence            777 66666777788888899999999988888888888889999999999988877666665  677777764

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-35  Score=267.17  Aligned_cols=390  Identities=24%  Similarity=0.253  Sum_probs=302.2

Q ss_pred             ceeEEEeeCCCCChHHHHHhcC--CCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCE
Q 010952           52 SLLSVDLSGSDVTDSGLIHLKD--CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  129 (497)
Q Consensus        52 ~l~~L~l~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  129 (497)
                      +.+.|+.++..+.......+..  .+.-+.|++++| ++....+..|..+++|+.+++..|..  ..+|...+...+|+.
T Consensus        53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~L--t~IP~f~~~sghl~~  129 (873)
T KOG4194|consen   53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNEL--TRIPRFGHESGHLEK  129 (873)
T ss_pred             CceeeecCccccccccccccCCcCccceeeeecccc-ccccCcHHHHhcCCcceeeeeccchh--hhcccccccccceeE
Confidence            4566677776664333333332  245667888887 77777888888889999999988863  445655556667899


Q ss_pred             EeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCC
Q 010952          130 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP  209 (497)
Q Consensus       130 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  209 (497)
                      |++.+|...+.....++.++.||.||++. +.+.......+..-.++++|++++|.|+....+.|..+.+|..|.++.|+
T Consensus       130 L~L~~N~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr  208 (873)
T KOG4194|consen  130 LDLRHNLISSVTSEELSALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR  208 (873)
T ss_pred             EeeeccccccccHHHHHhHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence            99888654445556778888899999888 44555556667776788899999998888888888888888899999998


Q ss_pred             CChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHH
Q 010952          210 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN  289 (497)
Q Consensus       210 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~  289 (497)
                      ++...+..|.++++|+.|++..|.+.......|.++++|+.+.+..|.+....-..|..+.+++.|++..|++.....+.
T Consensus       209 ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~  288 (873)
T KOG4194|consen  209 ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW  288 (873)
T ss_pred             ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc
Confidence            88877788888899999999888876654556788888888888888887655556778888889998888887766667


Q ss_pred             HhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCc
Q 010952          290 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT  369 (497)
Q Consensus       290 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  369 (497)
                      +-++.+|+.|+++.|.+.........-+++|+.|++++|.++......+..+..|++|.++.|+++.....+|..+.+|+
T Consensus       289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~  368 (873)
T KOG4194|consen  289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLH  368 (873)
T ss_pred             ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhh
Confidence            77788888888888887776666667788888888888888777777777788888888888888887777788888888


Q ss_pred             EEEecCCCcCh---HHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEe
Q 010952          370 HLDLFGARITD---SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV  446 (497)
Q Consensus       370 ~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l  446 (497)
                      +|++++|.+..   .....+..+++|+.|++-||++..+..+.|..+++|+.|+|.+| -+....+.++..+ .|++|-+
T Consensus       369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~  446 (873)
T KOG4194|consen  369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFEPM-ELKELVM  446 (873)
T ss_pred             hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCC-cceeecccccccc-hhhhhhh
Confidence            88888887543   33555677888888888888888887788888888888888888 6777777777776 7777755


Q ss_pred             e
Q 010952          447 S  447 (497)
Q Consensus       447 ~  447 (497)
                      .
T Consensus       447 n  447 (873)
T KOG4194|consen  447 N  447 (873)
T ss_pred             c
Confidence            4

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-34  Score=264.25  Aligned_cols=395  Identities=23%  Similarity=0.311  Sum_probs=314.2

Q ss_pred             CCCCc-CEEEccCccccChhHHHHhhCC--CCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCccccccccccccCCC
Q 010952           73 DCSNL-QSLDFNFCIQISDGGLEHLRGL--SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM  149 (497)
Q Consensus        73 ~~~~L-~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~  149 (497)
                      .|+.. +.|+.+.. .+....-..+.++  +.-+.|++++|. +....+..|.++++|+++++..| .+...|...+...
T Consensus        49 ~c~c~~~lldcs~~-~lea~~~~~l~g~lp~~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sg  125 (873)
T KOG4194|consen   49 TCPCNTRLLDCSDR-ELEAIDKSRLKGFLPSQTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESG  125 (873)
T ss_pred             cCCCCceeeecCcc-ccccccccccCCcCccceeeeeccccc-cccCcHHHHhcCCcceeeeeccc-hhhhccccccccc
Confidence            34433 44455553 4443322333332  345679999997 67777888999999999999984 4666666666667


Q ss_pred             CCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEc
Q 010952          150 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL  229 (497)
Q Consensus       150 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  229 (497)
                      +|+.|++.+ +.+.....+.+..++.|+.|+++.|.|+......+..-.++++|++++|.|+..-...|..+.+|..|.+
T Consensus       126 hl~~L~L~~-N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL  204 (873)
T KOG4194|consen  126 HLEKLDLRH-NLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL  204 (873)
T ss_pred             ceeEEeeec-cccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence            799999988 5566666778888889999999988888766667777788999999999988877778888889999999


Q ss_pred             CCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchH
Q 010952          230 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS  309 (497)
Q Consensus       230 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~  309 (497)
                      +.|.++......|.++++|+.|++..|.+.......|..+++|+.+.+..|.+.....+.|..+.++++|++..|++...
T Consensus       205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v  284 (873)
T KOG4194|consen  205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV  284 (873)
T ss_pred             ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence            99998888888888899999999998888755455688889999999988887766667777888999999998888877


Q ss_pred             HHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhcc
Q 010952          310 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF  389 (497)
Q Consensus       310 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  389 (497)
                      ...++-++..|+.|++++|.+.........-+++|+.|+++.|.++......+..+..|++|++++|.+.......+..+
T Consensus       285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l  364 (873)
T KOG4194|consen  285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL  364 (873)
T ss_pred             hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh
Confidence            77788888899999999988877666777778899999999998888878888888889999999998888777778888


Q ss_pred             CCCCeeeecCCCCCh---hhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccc
Q 010952          390 KNLRSLEICGGGLTD---AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR  466 (497)
Q Consensus       390 ~~L~~L~l~~~~l~~---~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~  466 (497)
                      .+|++|+++.|.+..   .....+..+++|+.|.+.+| ++....-.++.+++.|+.|++-+|.+-..-+++|..+ .|+
T Consensus       365 ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk  442 (873)
T KOG4194|consen  365 SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELK  442 (873)
T ss_pred             hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcceeecccccccc-hhh
Confidence            899999999887642   23455667889999999998 7877777788889999999999998888878888887 888


Q ss_pred             eeecccC
Q 010952          467 SLTLESC  473 (497)
Q Consensus       467 ~L~l~~~  473 (497)
                      +|.+..-
T Consensus       443 ~Lv~nSs  449 (873)
T KOG4194|consen  443 ELVMNSS  449 (873)
T ss_pred             hhhhccc
Confidence            8877653

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.93  E-value=1.5e-29  Score=220.74  Aligned_cols=413  Identities=19%  Similarity=0.210  Sum_probs=266.1

Q ss_pred             CCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCE
Q 010952           50 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  129 (497)
Q Consensus        50 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  129 (497)
                      .+.+++|+++++.+. ..|.+++.+..++.++.+.+ ++. ..++.+.....|++|+++.+..  ...++.++.+-.|+.
T Consensus        67 L~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n-~ls-~lp~~i~s~~~l~~l~~s~n~~--~el~~~i~~~~~l~d  141 (565)
T KOG0472|consen   67 LACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHN-KLS-ELPEQIGSLISLVKLDCSSNEL--KELPDSIGRLLDLED  141 (565)
T ss_pred             ccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccc-hHh-hccHHHhhhhhhhhhhccccce--eecCchHHHHhhhhh
Confidence            455666666666654 45666666666666666665 333 2456666667777777777653  334566666777777


Q ss_pred             EeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCC
Q 010952          130 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP  209 (497)
Q Consensus       130 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  209 (497)
                      ++..+| .+...+..+.++.+|..+++.++. +.... +....|+.|++++...|-+. ..|..++++..|+.|++..|+
T Consensus       142 l~~~~N-~i~slp~~~~~~~~l~~l~~~~n~-l~~l~-~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nk  217 (565)
T KOG0472|consen  142 LDATNN-QISSLPEDMVNLSKLSKLDLEGNK-LKALP-ENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNK  217 (565)
T ss_pred             hhcccc-ccccCchHHHHHHHHHHhhccccc-hhhCC-HHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcc
Confidence            776663 466666667777777777776633 33223 33333777777777666555 456677788888888888887


Q ss_pred             CChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHH
Q 010952          210 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN  289 (497)
Q Consensus       210 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~  289 (497)
                      +.. .| .|.++..|.+++++.|++.....+....++++.+||++.|++. ..|+.++-+.+|+.|++++|.++..+ ..
T Consensus       218 i~~-lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp-~s  293 (565)
T KOG0472|consen  218 IRF-LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLP-YS  293 (565)
T ss_pred             ccc-CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCC-cc
Confidence            765 33 7788888888888888776655555668888999999988887 56677777888899999988776543 34


Q ss_pred             HhCCCCCCEeeccCcccchHHHHhh-----------------------------------------cCCCCCCEEeccCC
Q 010952          290 LTGLCNLKCLELSDTQVGSSGLRHL-----------------------------------------SGLTNLESINLSFT  328 (497)
Q Consensus       290 l~~~~~L~~L~l~~~~~~~~~~~~l-----------------------------------------~~~~~L~~L~l~~~  328 (497)
                      ++++ .|+.|.+.+|.+...-...+                                         -...+.+.|++++-
T Consensus       294 Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~  372 (565)
T KOG0472|consen  294 LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK  372 (565)
T ss_pred             cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc
Confidence            5666 78888888775422111100                                         01123344455444


Q ss_pred             CCChHHHHHhc--CCCCCcEEEcCCCCCCHhH-----------------------HHHhcCCCCCcEEEecCCCcChHHH
Q 010952          329 GISDGSLRKLA--GLSSLKSLNLDARQITDTG-----------------------LAALTSLTGLTHLDLFGARITDSGA  383 (497)
Q Consensus       329 ~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~-----------------------~~~~~~~~~L~~L~l~~~~~~~~~~  383 (497)
                      .++....+.+.  .-.-.+..+++.|++...+                       +..+..+++|..|++++|.+.+. |
T Consensus       373 qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~L-P  451 (565)
T KOG0472|consen  373 QLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDL-P  451 (565)
T ss_pred             ccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhc-c
Confidence            44332222221  2223556666666554321                       12233456666667666655543 4


Q ss_pred             HHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCc
Q 010952          384 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK  463 (497)
Q Consensus       384 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~  463 (497)
                      ..+..+..|+.|+++.|.+... |..++.+..++.+-.++| .+....+..+.++.+|.+|++.+|.+.. +|..++++.
T Consensus       452 ~e~~~lv~Lq~LnlS~NrFr~l-P~~~y~lq~lEtllas~n-qi~~vd~~~l~nm~nL~tLDL~nNdlq~-IPp~Lgnmt  528 (565)
T KOG0472|consen  452 EEMGSLVRLQTLNLSFNRFRML-PECLYELQTLETLLASNN-QIGSVDPSGLKNMRNLTTLDLQNNDLQQ-IPPILGNMT  528 (565)
T ss_pred             hhhhhhhhhheecccccccccc-hHHHhhHHHHHHHHhccc-cccccChHHhhhhhhcceeccCCCchhh-CChhhcccc
Confidence            4445555677777776665544 555555555666555556 6776667778899999999999999876 457889999


Q ss_pred             ccceeecccCCCCHHHH
Q 010952          464 NLRSLTLESCKVTANDI  480 (497)
Q Consensus       464 ~L~~L~l~~~~~~~~~~  480 (497)
                      +|++|++++|+|.-+.-
T Consensus       529 nL~hLeL~gNpfr~Pr~  545 (565)
T KOG0472|consen  529 NLRHLELDGNPFRQPRH  545 (565)
T ss_pred             ceeEEEecCCccCCCHH
Confidence            99999999999975433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.93  E-value=1.2e-28  Score=227.04  Aligned_cols=366  Identities=21%  Similarity=0.204  Sum_probs=229.9

Q ss_pred             CCCCcCEEEccCccccC-hhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCccccccccccccCCCCC
Q 010952           73 DCSNLQSLDFNFCIQIS-DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL  151 (497)
Q Consensus        73 ~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  151 (497)
                      -+|-.|-.++++| .++ +..|.....++.++-|.|.....  ...|+.++++.+|++|.+.+| .+......+..+|+|
T Consensus         5 VLpFVrGvDfsgN-DFsg~~FP~~v~qMt~~~WLkLnrt~L--~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~L   80 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGN-DFSGDRFPHDVEQMTQMTWLKLNRTKL--EQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRL   80 (1255)
T ss_pred             ccceeecccccCC-cCCCCcCchhHHHhhheeEEEechhhh--hhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhh
Confidence            3566788889988 455 56778888899999999998764  668999999999999999985 455666677888999


Q ss_pred             CEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCC
Q 010952          152 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR  231 (497)
Q Consensus       152 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  231 (497)
                      |.+.++.++-.....+..+-++..|+.|+++.|++. +.|..+...+++-.|++++|+|.......+.++..|-.|++++
T Consensus        81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~  159 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN  159 (1255)
T ss_pred             HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence            999988866555556677788888888888888887 5567777788888888888888765445567778888888888


Q ss_pred             CCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCC-HhHHHHHhCCCCCCEeeccCcccchHH
Q 010952          232 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDTQVGSSG  310 (497)
Q Consensus       232 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~-~~~~~~l~~~~~L~~L~l~~~~~~~~~  310 (497)
                      |.+... |.....+..|++|++++|.+.......+..+++|+.|.+++.+-+ ...|..+..+.+|..++++.|++... 
T Consensus       160 NrLe~L-PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v-  237 (1255)
T KOG0444|consen  160 NRLEML-PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV-  237 (1255)
T ss_pred             chhhhc-CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc-
Confidence            877543 445667788888888888776554455556666777777665322 12233344555666666666655432 


Q ss_pred             HHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChH-HHHHhhcc
Q 010952          311 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNF  389 (497)
Q Consensus       311 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~  389 (497)
                      +..+-.+++|+.|++++|.++... .....-.+|++|+++.|+++.. ++++..+++|+.|...+|+++.. +|..++.+
T Consensus       238 Pecly~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL  315 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL  315 (1255)
T ss_pred             hHHHhhhhhhheeccCcCceeeee-ccHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence            344445555555666555544211 1111223455555555555542 34444555555555555544321 23334444


Q ss_pred             CCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCc
Q 010952          390 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR  450 (497)
Q Consensus       390 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~  450 (497)
                      ..|+.+...+|.+.-. |..+..|+.|+.|.|+.| ++-. .|+++.-++.|+.|++..|+
T Consensus       316 ~~Levf~aanN~LElV-PEglcRC~kL~kL~L~~N-rLiT-LPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  316 IQLEVFHAANNKLELV-PEGLCRCVKLQKLKLDHN-RLIT-LPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             hhhHHHHhhccccccC-chhhhhhHHHHHhccccc-ceee-chhhhhhcCCcceeeccCCc
Confidence            4455554444443322 444445555555555554 2221 24444445555555555554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.93  E-value=7.8e-28  Score=231.07  Aligned_cols=414  Identities=24%  Similarity=0.250  Sum_probs=244.2

Q ss_pred             ceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEe
Q 010952           52 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD  131 (497)
Q Consensus        52 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  131 (497)
                      +|++|+++++.+. ..|..+..+.+|+.|+++.+ .+.. .+...+.+.+|++|.|.++..  ...|..+..+.+|+.|+
T Consensus        46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n-~i~~-vp~s~~~~~~l~~lnL~~n~l--~~lP~~~~~lknl~~Ld  120 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN-YIRS-VPSSCSNMRNLQYLNLKNNRL--QSLPASISELKNLQYLD  120 (1081)
T ss_pred             eeEEeeccccccc-cCCchhhhHHHHhhcccchh-hHhh-Cchhhhhhhcchhheeccchh--hcCchhHHhhhcccccc
Confidence            4999999998765 56777778889999999886 3333 456777888999999998863  66788888999999999


Q ss_pred             ccCccccccccccccCCCCCCEEeccCC------------------CCCCccccccccCCCCCCEEEeeccccCchhHHh
Q 010952          132 LERCTRIHGGLVNLKGLMKLESLNIKWC------------------NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY  193 (497)
Q Consensus       132 l~~~~~~~~~~~~~~~l~~L~~L~l~~~------------------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  193 (497)
                      ++.|. +...|..+..+..+..+..+++                  +.+.+.....+..+.+  .|+++.|.+....   
T Consensus       121 lS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~d---  194 (1081)
T KOG0618|consen  121 LSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLD---  194 (1081)
T ss_pred             cchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhh---
Confidence            99853 3344444444444444444432                  1111122222233333  3556555544222   


Q ss_pred             hhcCCCCcEEEccCCCCChHH------------------HHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccC
Q 010952          194 LKGLQKLTLLNLEGCPVTAAC------------------LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF  255 (497)
Q Consensus       194 l~~l~~L~~L~l~~~~~~~~~------------------~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  255 (497)
                      +..+.+|+.+....+++....                  ...-..-.+|++++++++.+.... +++..+.+|+.++...
T Consensus       195 ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~  273 (1081)
T KOG0618|consen  195 LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANH  273 (1081)
T ss_pred             hhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccc
Confidence            222333333333333221100                  000011124444444444443322 4444444444444444


Q ss_pred             CCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCC-CCEEeccCCCCChHH
Q 010952          256 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN-LESINLSFTGISDGS  334 (497)
Q Consensus       256 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~  334 (497)
                      |.+. ..+..+...++|+.+.+..|.+...+ ....++..|++|++..|++.......+..... ++.+..+.+.+....
T Consensus       274 N~l~-~lp~ri~~~~~L~~l~~~~nel~yip-~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp  351 (1081)
T KOG0618|consen  274 NRLV-ALPLRISRITSLVSLSAAYNELEYIP-PFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP  351 (1081)
T ss_pred             hhHH-hhHHHHhhhhhHHHHHhhhhhhhhCC-CcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc
Confidence            4443 22233333444444444444332211 12233445555555555444332222222211 333333333222111


Q ss_pred             HHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcC
Q 010952          335 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS  414 (497)
Q Consensus       335 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~  414 (497)
                      .-.=..++.|+.|++.+|.+++.....+.++++|+.|++++|++.......+.+++.|++|+++||.++.. +..+..++
T Consensus       352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L-p~tva~~~  430 (1081)
T KOG0618|consen  352 SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL-PDTVANLG  430 (1081)
T ss_pred             cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh-hHHHHhhh
Confidence            00001245678888888999888778888899999999999998887778888999999999999999988 47778889


Q ss_pred             CCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCHHHHHHH
Q 010952          415 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL  483 (497)
Q Consensus       415 ~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l  483 (497)
                      .|++|...+| .+.. .| .+..++.|+.+|++.|.++......-...++|++|+++||.-.....+.+
T Consensus       431 ~L~tL~ahsN-~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l  496 (1081)
T KOG0618|consen  431 RLHTLRAHSN-QLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTL  496 (1081)
T ss_pred             hhHHHhhcCC-ceee-ch-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhh
Confidence            9999999888 5554 23 67889999999999999887766555455899999999996433333333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.93  E-value=5.7e-28  Score=222.61  Aligned_cols=367  Identities=21%  Similarity=0.203  Sum_probs=302.4

Q ss_pred             CCceeEEEeeCCCCC-hHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCC
Q 010952           50 GSSLLSVDLSGSDVT-DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV  128 (497)
Q Consensus        50 ~~~l~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  128 (497)
                      +|-+|-+++++|.++ +..|....++.+++.|.+... ++. ..|+.++++.+|++|.+.+|+.  ......++.+|.|+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt-~L~-~vPeEL~~lqkLEHLs~~HN~L--~~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT-KLE-QVPEELSRLQKLEHLSMAHNQL--ISVHGELSDLPRLR   81 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechh-hhh-hChHHHHHHhhhhhhhhhhhhh--HhhhhhhccchhhH
Confidence            678899999999987 556777889999999999875 454 3688999999999999999985  44557788999999


Q ss_pred             EEeccCcc-ccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccC
Q 010952          129 KLDLERCT-RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG  207 (497)
Q Consensus       129 ~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  207 (497)
                      .+.+..|+ +..+.|..+-.+..|.+|+++++. +. ..+..+..-+++-.|++++|+|....-..+.++..|-.|++++
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~  159 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN  159 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhh-hh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence            99999765 344667888899999999999844 43 3567777778889999999999877767778899999999999


Q ss_pred             CCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCCh-hHHHHhhCCCCcCEEeCCCCCCCHhH
Q 010952          208 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGDEG  286 (497)
Q Consensus       208 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~l~~~~  286 (497)
                      |++.. .|..++.+..|+.|.+++|.+.......+..+.+|++|.+++.+.+. ..|..+..+.+|+.++++.|++.. .
T Consensus       160 NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-v  237 (1255)
T KOG0444|consen  160 NRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-V  237 (1255)
T ss_pred             chhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-c
Confidence            99866 56678999999999999998776666666777889999999876552 345556678899999999998874 4


Q ss_pred             HHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhH-HHHhcCC
Q 010952          287 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSL  365 (497)
Q Consensus       287 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~  365 (497)
                      |..+..+++|+.|++++|.++... ...+.+.+|++|+++.|.++. .+.++.++++|+.|.+.+|+++-.+ +..++.+
T Consensus       238 Pecly~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL  315 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL  315 (1255)
T ss_pred             hHHHhhhhhhheeccCcCceeeee-ccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence            556778999999999999987653 334567899999999998764 5678889999999999999887554 4567788


Q ss_pred             CCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCC
Q 010952          366 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT  428 (497)
Q Consensus       366 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~  428 (497)
                      ..|+.+...+|.+. ..|..+..|+.|+.|.++.|.+... |..+.-++.|+.|++..|+++.
T Consensus       316 ~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTL-PeaIHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  316 IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITL-PEAIHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             hhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeec-hhhhhhcCCcceeeccCCcCcc
Confidence            89999998888764 4578889999999999999998776 7788889999999999997654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.91  E-value=8.6e-27  Score=223.96  Aligned_cols=422  Identities=23%  Similarity=0.245  Sum_probs=276.6

Q ss_pred             ceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEe
Q 010952           52 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD  131 (497)
Q Consensus        52 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  131 (497)
                      .++.|+++.|-+.+...+....+-+|+.|+++++ .+.. .+..+..+.+|+.|+++.|.+  ...|....++.+|+++.
T Consensus        22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn-~~~~-fp~~it~l~~L~~ln~s~n~i--~~vp~s~~~~~~l~~ln   97 (1081)
T KOG0618|consen   22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNN-QISS-FPIQITLLSHLRQLNLSRNYI--RSVPSSCSNMRNLQYLN   97 (1081)
T ss_pred             HHHhhhccccccccCchHHhhheeeeEEeecccc-cccc-CCchhhhHHHHhhcccchhhH--hhCchhhhhhhcchhhe
Confidence            3677777776554333555556666999999887 3332 466777788899999998854  44567788888999999


Q ss_pred             ccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCC-------------------CCEEEeeccccCchhHH
Q 010952          132 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN-------------------LKSLQISCSKVTDSGIA  192 (497)
Q Consensus       132 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~-------------------L~~L~l~~~~~~~~~~~  192 (497)
                      +.+ +.....|..+..+.+|+.|+++.+....  .+..+..+..                   ++.+++..+.+....+.
T Consensus        98 L~~-n~l~~lP~~~~~lknl~~LdlS~N~f~~--~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~  174 (1081)
T KOG0618|consen   98 LKN-NRLQSLPASISELKNLQYLDLSFNHFGP--IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLI  174 (1081)
T ss_pred             ecc-chhhcCchhHHhhhcccccccchhccCC--CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhc
Confidence            987 5678888888888999999998754332  2222222222                   33344444444444444


Q ss_pred             hhhcCCCCcEEEccCCCCChHHHHHhhCC--------------------CCCcEEEcCCCCCChhHhHhhhcCCCCCEEE
Q 010952          193 YLKGLQKLTLLNLEGCPVTAACLDSLSAL--------------------GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN  252 (497)
Q Consensus       193 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l--------------------~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  252 (497)
                      .+..+..  .+++.+|.+...   .+..+                    ++|+.|..++|.+.....  -....++++++
T Consensus       175 ~i~~l~~--~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~d  247 (1081)
T KOG0618|consen  175 DIYNLTH--QLDLRYNEMEVL---DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLD  247 (1081)
T ss_pred             chhhhhe--eeecccchhhhh---hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeee
Confidence            4444444  466666655421   11222                    233333333333221110  11224566666


Q ss_pred             ccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCCh
Q 010952          253 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD  332 (497)
Q Consensus       253 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  332 (497)
                      ++.+.+... +.++..+.+|+.+....|.+. ..+..+....+|+.+.+..|.+... +......++|++|++..|++..
T Consensus       248 is~n~l~~l-p~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yi-p~~le~~~sL~tLdL~~N~L~~  324 (1081)
T KOG0618|consen  248 ISHNNLSNL-PEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYI-PPFLEGLKSLRTLDLQSNNLPS  324 (1081)
T ss_pred             cchhhhhcc-hHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhC-CCcccccceeeeeeehhccccc
Confidence            666665533 255566666666666666553 2333444455566666655554432 3344556777777777776654


Q ss_pred             HHHHHhcCCC-CCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhh
Q 010952          333 GSLRKLAGLS-SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK  411 (497)
Q Consensus       333 ~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~  411 (497)
                      .....+.... +++.+..+.+.+.......-...+.|+.|++.+|.+++.....+.++++|+.|++++|++.......+.
T Consensus       325 lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~  404 (1081)
T KOG0618|consen  325 LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLR  404 (1081)
T ss_pred             cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHh
Confidence            4433333222 245555554444332211112356788999999999998888889999999999999999988888889


Q ss_pred             hcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCHHHHHHHhhcCCCCC
Q 010952          412 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL  491 (497)
Q Consensus       412 ~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p~L  491 (497)
                      +++.|++|+++|| +++. ++..+..++.|++|...+|++....  .+..++.|+.+|++.|.++...+.+-.  .+|+|
T Consensus       405 kle~LeeL~LSGN-kL~~-Lp~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~--p~p~L  478 (1081)
T KOG0618|consen  405 KLEELEELNLSGN-KLTT-LPDTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEAL--PSPNL  478 (1081)
T ss_pred             chHHhHHHhcccc-hhhh-hhHHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhhhhhhhhhC--CCccc
Confidence            9999999999999 7776 5688999999999999999988744  778899999999999999999888875  67999


Q ss_pred             ccCCC
Q 010952          492 VSFRP  496 (497)
Q Consensus       492 ~~l~~  496 (497)
                      ++|..
T Consensus       479 kyLdl  483 (1081)
T KOG0618|consen  479 KYLDL  483 (1081)
T ss_pred             ceeec
Confidence            98853

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.91  E-value=6.5e-28  Score=210.63  Aligned_cols=387  Identities=21%  Similarity=0.232  Sum_probs=296.5

Q ss_pred             CCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCE
Q 010952           50 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  129 (497)
Q Consensus        50 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  129 (497)
                      ...+.+++.+++.+. ..|+.+....+|+.++.+.+ .+.. .++.++++-.|..|+..+|.+  ...|+.+.++.+|..
T Consensus        90 l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n-~~~e-l~~~i~~~~~l~dl~~~~N~i--~slp~~~~~~~~l~~  164 (565)
T KOG0472|consen   90 LEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSN-ELKE-LPDSIGRLLDLEDLDATNNQI--SSLPEDMVNLSKLSK  164 (565)
T ss_pred             HHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccc-ceee-cCchHHHHhhhhhhhcccccc--ccCchHHHHHHHHHH
Confidence            457788999998875 78889999999999999987 4443 577888899999999999975  456889999999999


Q ss_pred             EeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCC
Q 010952          130 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP  209 (497)
Q Consensus       130 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  209 (497)
                      +++.++ .....++..-.++.|++++..++  .-+..++.++.+.+|..|++..|.+....  .|.++..|+.+.+..|+
T Consensus       165 l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N--~L~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~  239 (565)
T KOG0472|consen  165 LDLEGN-KLKALPENHIAMKRLKHLDCNSN--LLETLPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQ  239 (565)
T ss_pred             hhcccc-chhhCCHHHHHHHHHHhcccchh--hhhcCChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccH
Confidence            999985 56666666666999999998763  44568899999999999999999988533  78999999999999998


Q ss_pred             CChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHH
Q 010952          210 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN  289 (497)
Q Consensus       210 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~  289 (497)
                      +.....+....++++..|++.+|++.+ .|+.+..+.+|+.||+++|.++. .+..++++ .|+.|.+.+|.+.......
T Consensus       240 i~~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~i  316 (565)
T KOG0472|consen  240 IEMLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREI  316 (565)
T ss_pred             HHhhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHH
Confidence            876444445589999999999999876 46667788999999999999984 45567888 8999999988543211110


Q ss_pred             -----------Hh------------------------------CCCCCCEeeccCcccchHHHHhhcCC--CCCCEEecc
Q 010952          290 -----------LT------------------------------GLCNLKCLELSDTQVGSSGLRHLSGL--TNLESINLS  326 (497)
Q Consensus       290 -----------l~------------------------------~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~  326 (497)
                                 +.                              ...+.+.|++++-+++....+.+...  .-++.++++
T Consensus       317 i~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfs  396 (565)
T KOG0472|consen  317 ISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFS  396 (565)
T ss_pred             HcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecc
Confidence                       00                              01234455555554444333333221  124555555


Q ss_pred             CCCCC-----------------------hHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHH
Q 010952          327 FTGIS-----------------------DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA  383 (497)
Q Consensus       327 ~~~~~-----------------------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  383 (497)
                      .|.+.                       +.++..++.+++|..|++++|-+.+. +..++.+..|+.|+++.|++... |
T Consensus       397 kNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~L-P~e~~~lv~Lq~LnlS~NrFr~l-P  474 (565)
T KOG0472|consen  397 KNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDL-PEEMGSLVRLQTLNLSFNRFRML-P  474 (565)
T ss_pred             cchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhc-chhhhhhhhhheecccccccccc-h
Confidence            54432                       23344566789999999999877664 44556678899999999987654 7


Q ss_pred             HHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccCh
Q 010952          384 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS  453 (497)
Q Consensus       384 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~  453 (497)
                      ..+.....++.+-.++|++....+..+..+++|++|++.+| .+.. +|+.++++++|+.|++.+|+|..
T Consensus       475 ~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~-IPp~LgnmtnL~hLeL~gNpfr~  542 (565)
T KOG0472|consen  475 ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNN-DLQQ-IPPILGNMTNLRHLELDGNPFRQ  542 (565)
T ss_pred             HHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCC-chhh-CChhhccccceeEEEecCCccCC
Confidence            77777778888888889999988888999999999999999 5554 68889999999999999999884

>PLN03210 Resistant to P

Probab=99.87  E-value=9.1e-22  Score=210.09  Aligned_cols=343  Identities=22%  Similarity=0.193  Sum_probs=209.0

Q ss_pred             HHHhcCCCCcCEEEccCcc-----ccChhHHHHhhCCC-CCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCccccccc
Q 010952           68 LIHLKDCSNLQSLDFNFCI-----QISDGGLEHLRGLS-NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG  141 (497)
Q Consensus        68 ~~~l~~~~~L~~L~l~~~~-----~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  141 (497)
                      ..+|..+++|+.|.+....     ......+..+..++ +|+.|.+.+++.  ...|..+ .+.+|++|++.++ .+...
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l--~~lP~~f-~~~~L~~L~L~~s-~l~~L  626 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL--RCMPSNF-RPENLVKLQMQGS-KLEKL  626 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC--CCCCCcC-CccCCcEEECcCc-ccccc
Confidence            4457788889888886531     11122344455554 688888888763  3344444 4678888888885 46666


Q ss_pred             cccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCC
Q 010952          142 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL  221 (497)
Q Consensus       142 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l  221 (497)
                      +..+..+++|+.|+++++..+..  .+.+..+++|+.|++.++......+..+..+++|+.|++++|.....+|..+ ++
T Consensus       627 ~~~~~~l~~Lk~L~Ls~~~~l~~--ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        627 WDGVHSLTGLRNIDLRGSKNLKE--IPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             ccccccCCCCCEEECCCCCCcCc--CCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            66777888888888887665542  2356778888888888776555666777888888888888875444344433 67


Q ss_pred             CCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCH-------hHHHHHhCCC
Q 010952          222 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-------EGLVNLTGLC  294 (497)
Q Consensus       222 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~-------~~~~~l~~~~  294 (497)
                      ++|+.|++++|......+.   ...+|+.|+++++.+.. .+..+ .+++|+.|.+..+....       ..+......+
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~  778 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP  778 (1153)
T ss_pred             CCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence            7888888888764433332   24577888888777653 22222 45677777776532110       1111122345


Q ss_pred             CCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEec
Q 010952          295 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF  374 (497)
Q Consensus       295 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  374 (497)
                      +|+.|++++|......+..+..+++|+.|++++|......+..+ ++++|+.|++++|......+   ....+|+.|+++
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p---~~~~nL~~L~Ls  854 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP---DISTNISDLNLS  854 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc---ccccccCEeECC
Confidence            67777777765544455566677777777777663322222222 46677777777653322111   123567777777


Q ss_pred             CCCcChHHHHHhhccCCCCeeeecCCC-CChhhHHhhhhcCCCCeecccCCCCCC
Q 010952          375 GARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLT  428 (497)
Q Consensus       375 ~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~~~~l~  428 (497)
                      +|.+... |..+..+++|+.|++++|+ +... +..+..+++|+.+++++|..++
T Consensus       855 ~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~l-~~~~~~L~~L~~L~l~~C~~L~  907 (1153)
T PLN03210        855 RTGIEEV-PWWIEKFSNLSFLDMNGCNNLQRV-SLNISKLKHLETVDFSDCGALT  907 (1153)
T ss_pred             CCCCccC-hHHHhcCCCCCEEECCCCCCcCcc-CcccccccCCCeeecCCCcccc
Confidence            7766543 5556667777777777653 3332 3344556667777777765444

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.85  E-value=7.7e-21  Score=203.00  Aligned_cols=342  Identities=21%  Similarity=0.175  Sum_probs=234.3

Q ss_pred             HHHHhhCCCCCCEEEcCCCCC-----CChHHHHHHhCCC-CCCEEeccCccccccccccccCCCCCCEEeccCCCCCCcc
Q 010952           92 GLEHLRGLSNLTSLSFRRNNA-----ITAQGMKAFAGLI-NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS  165 (497)
Q Consensus        92 ~~~~~~~~~~L~~L~l~~~~~-----~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  165 (497)
                      ...+|.++++|+.|++..+..     .....|+.+..++ +|+.|.+.++ .+...|..+ ...+|+.|++.++. +. .
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~-l~-~  625 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSK-LE-K  625 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCcc-cc-c
Confidence            346788899999999865421     1223455566654 6999999885 355555555 46789999998854 32 2


Q ss_pred             ccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcC
Q 010952          166 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI  245 (497)
Q Consensus       166 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l  245 (497)
                      .+..+..+++|+.|+++++......+ .+..+++|++|++++|......|..+..+++|+.|++++|......+..+ .+
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            44566788999999998764332333 47778899999999986666678888899999999999876544444433 67


Q ss_pred             CCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccch-------HHHHhhcCCC
Q 010952          246 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-------SGLRHLSGLT  318 (497)
Q Consensus       246 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~-------~~~~~l~~~~  318 (497)
                      ++|+.|++++|......+.   ..++|+.|++.++.+...+ ..+ .+++|++|.+.++....       ........++
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP-~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~  778 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFP-SNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP  778 (1153)
T ss_pred             CCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccccc-ccc-cccccccccccccchhhccccccccchhhhhccc
Confidence            8899999988854433322   2467888999888765432 222 46778888776643211       1111122356


Q ss_pred             CCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeec
Q 010952          319 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC  398 (497)
Q Consensus       319 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  398 (497)
                      +|+.|++++|......+..+.++++|+.|++.+|......+... .+++|+.|++++|......|.   ..++|+.|+++
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls  854 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLS  854 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeECC
Confidence            88889998886555566778888899999998864332222222 578889999988865433332   24678888888


Q ss_pred             CCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCc
Q 010952          399 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR  450 (497)
Q Consensus       399 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~  450 (497)
                      +|.+... |..+..+++|+.|++++|..+.. ++..+..+++|+.+++++|.
T Consensus       855 ~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~-l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        855 RTGIEEV-PWWIEKFSNLSFLDMNGCNNLQR-VSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCccC-hHHHhcCCCCCEEECCCCCCcCc-cCcccccccCCCeeecCCCc
Confidence            8888765 56677788899999988866665 44456678888888888885

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.84  E-value=7.3e-19  Score=163.88  Aligned_cols=209  Identities=29%  Similarity=0.407  Sum_probs=111.0

Q ss_pred             hhCCCCcCEEeCCCCCCCHhHHHHHhCC---CCCCEeeccCcccchHH----HHhhcCC-CCCCEEeccCCCCChH----
Q 010952          266 LKGLTNLESLNLDSCGIGDEGLVNLTGL---CNLKCLELSDTQVGSSG----LRHLSGL-TNLESINLSFTGISDG----  333 (497)
Q Consensus       266 l~~~~~L~~L~l~~~~l~~~~~~~l~~~---~~L~~L~l~~~~~~~~~----~~~l~~~-~~L~~L~l~~~~~~~~----  333 (497)
                      +..+++|+.|+++++.+....+..+..+   ++|++|++++|.+....    ...+..+ ++|+.+++++|.++..    
T Consensus        77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  156 (319)
T cd00116          77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA  156 (319)
T ss_pred             HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence            3344555555555554443222222222   23555555555544211    1223344 5666666666655522    


Q ss_pred             HHHHhcCCCCCcEEEcCCCCCCHhHH----HHhcCCCCCcEEEecCCCcChHHHH----HhhccCCCCeeeecCCCCChh
Q 010952          334 SLRKLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDSGAA----YLRNFKNLRSLEICGGGLTDA  405 (497)
Q Consensus       334 ~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~l~~~  405 (497)
                      ....+..+++|+.|++++|.+++.+.    ..+..+++|+.|++++|.+.+....    .+..+++|++|++++|.+++.
T Consensus       157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~  236 (319)
T cd00116         157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA  236 (319)
T ss_pred             HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence            22334455666666666666664322    2233445677777777766544332    234566677777777776654


Q ss_pred             hHHhhhh-----cCCCCeecccCCCCCChh----HHHHhhcCCCCcEEEeeCCccChhHH----HhhcCC-cccceeecc
Q 010952          406 GVKHIKD-----LSSLTLLNLSQNCNLTDK----TLELISGLTGLVSLNVSNSRITSAGL----RHLKPL-KNLRSLTLE  471 (497)
Q Consensus       406 ~~~~~~~-----l~~L~~L~l~~~~~l~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~----~~l~~~-~~L~~L~l~  471 (497)
                      ....+..     .+.|++|++++| .+++.    ....+..+++|+.+++++|.+++...    ..+... +.|+.+++.
T Consensus       237 ~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~  315 (319)
T cd00116         237 GAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK  315 (319)
T ss_pred             HHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence            4443322     257777777777 56522    23344455677777777777765432    233334 567777777


Q ss_pred             cCCC
Q 010952          472 SCKV  475 (497)
Q Consensus       472 ~~~~  475 (497)
                      ++++
T Consensus       316 ~~~~  319 (319)
T cd00116         316 DDSF  319 (319)
T ss_pred             CCCC
Confidence            7653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.81  E-value=5.6e-18  Score=157.92  Aligned_cols=259  Identities=27%  Similarity=0.363  Sum_probs=128.9

Q ss_pred             ccCCCCCCEEEeeccccCchh----HHhhhcCCCCcEEEccCCCCC------hHHHHHhhCCCCCcEEEcCCCCCChhHh
Q 010952          170 LSGLTNLKSLQISCSKVTDSG----IAYLKGLQKLTLLNLEGCPVT------AACLDSLSALGSLFYLNLNRCQLSDDGC  239 (497)
Q Consensus       170 l~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~------~~~~~~l~~l~~L~~L~l~~~~~~~~~~  239 (497)
                      +..++.|+.+++.++.+++..    ...+...+.+++++++++.+.      ...+..+..+++|+.|++++|.+....+
T Consensus        19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~   98 (319)
T cd00116          19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC   98 (319)
T ss_pred             HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence            344455666666666554332    222334455555555555443      1122334444555555555554443333


Q ss_pred             HhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHH----HHHhCC-CCCCEeeccCcccch----HH
Q 010952          240 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL----VNLTGL-CNLKCLELSDTQVGS----SG  310 (497)
Q Consensus       240 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~----~~l~~~-~~L~~L~l~~~~~~~----~~  310 (497)
                      ..+..+.+                    . ++|+.|++++|.+.+...    ..+..+ ++|+.|++++|.+..    ..
T Consensus        99 ~~~~~l~~--------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          99 GVLESLLR--------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             HHHHHHhc--------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            33322222                    1 225555554444432111    122233 455555555555442    11


Q ss_pred             HHhhcCCCCCCEEeccCCCCChHH----HHHhcCCCCCcEEEcCCCCCCHhHHH----HhcCCCCCcEEEecCCCcChHH
Q 010952          311 LRHLSGLTNLESINLSFTGISDGS----LRKLAGLSSLKSLNLDARQITDTGLA----ALTSLTGLTHLDLFGARITDSG  382 (497)
Q Consensus       311 ~~~l~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~  382 (497)
                      ...+..+++|++|++++|.+.+..    ...+..+++|+.|++++|.+++.+..    .+..+++|+.|++++|.+++..
T Consensus       158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~  237 (319)
T cd00116         158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG  237 (319)
T ss_pred             HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH
Confidence            223344455666666666555322    12233445666666666666544332    2335666777777777666543


Q ss_pred             HHHhh-c----cCCCCeeeecCCCCChhhH----HhhhhcCCCCeecccCCCCCChh----HHHHhhcC-CCCcEEEeeC
Q 010952          383 AAYLR-N----FKNLRSLEICGGGLTDAGV----KHIKDLSSLTLLNLSQNCNLTDK----TLELISGL-TGLVSLNVSN  448 (497)
Q Consensus       383 ~~~l~-~----~~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~l~~~~~l~~~----~~~~l~~~-~~L~~L~l~~  448 (497)
                      ...+. .    .+.|++|++++|.+++.+.    ..+..+++|+.+++++| .+++.    ....+... +.|+++++.+
T Consensus       238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (319)
T cd00116         238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKD  316 (319)
T ss_pred             HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence            33332 1    2577777777777663332    23344567777777777 66654    23333344 5777777776


Q ss_pred             Cc
Q 010952          449 SR  450 (497)
Q Consensus       449 ~~  450 (497)
                      ++
T Consensus       317 ~~  318 (319)
T cd00116         317 DS  318 (319)
T ss_pred             CC
Confidence            65

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.76  E-value=3.6e-20  Score=162.19  Aligned_cols=131  Identities=23%  Similarity=0.253  Sum_probs=96.0

Q ss_pred             CCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCC-CCCChhHhHhhhcCCCCCEEEc
Q 010952          175 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNL  253 (497)
Q Consensus       175 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l  253 (497)
                      .-.++++..|+|+..++..|+.+++|+.|++++|.|+...+.+|.+++++..|-+.+ |.+.+.....|+.+..++.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            456677778888877778888888888888888888777777888777777766655 7777766677777888888887


Q ss_pred             cCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcc
Q 010952          254 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ  305 (497)
Q Consensus       254 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~  305 (497)
                      ..+++.......+..++++..|.+.++.+.......+.....++.+++..+.
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            7777776666777777888888877776655554556666677777766554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.72  E-value=4.8e-19  Score=155.21  Aligned_cols=276  Identities=22%  Similarity=0.235  Sum_probs=181.5

Q ss_pred             CCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccC-CCCChhHHHHhhCCCCcCEEeC
Q 010952          199 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL  277 (497)
Q Consensus       199 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l  277 (497)
                      .-..+++..|.|+...+.+|..+++|+.|++++|.+....+.+|..++++..|-+.+ |.++......|..+..++.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            456789999999998889999999999999999999999999999999888887776 8888777778899999999999


Q ss_pred             CCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCC-h--------H---HHHHhcCCCCCc
Q 010952          278 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS-D--------G---SLRKLAGLSSLK  345 (497)
Q Consensus       278 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~--------~---~~~~l~~~~~L~  345 (497)
                      .-+.+.-.....+..++++..|.+.+|.+.......+..+..++++.+..+.+. +        .   .+...+.+....
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            888887777788889999999999988765554445566667777766554311 0        0   011111222222


Q ss_pred             EEEcCCCCCCHhHHHHhc-CCCCCcEEEecCCCc-ChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccC
Q 010952          346 SLNLDARQITDTGLAALT-SLTGLTHLDLFGARI-TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ  423 (497)
Q Consensus       346 ~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~  423 (497)
                      ...+.+.++..+....+. ....+.+-.-+.|.. ..-+...|..+++|++|++++|.++.+...+|.....+++|.|..
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~  307 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR  307 (498)
T ss_pred             hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence            222222111111111111 111111111122222 222334466677777777777777776666666677777777777


Q ss_pred             CCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCC
Q 010952          424 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV  475 (497)
Q Consensus       424 ~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~  475 (497)
                      | ++....-.++.++..|+.|++++|+++...+.+|....+|.+|.+-.|++
T Consensus       308 N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  308 N-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             c-hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            7 56655556666677777777777777766666677777777777766655

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.63  E-value=1e-15  Score=152.38  Aligned_cols=264  Identities=21%  Similarity=0.128  Sum_probs=129.8

Q ss_pred             CCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEc
Q 010952          150 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL  229 (497)
Q Consensus       150 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  229 (497)
                      .-..|+++.+. +. ..+..+.  ++|+.|.+..|.++... .   ..++|++|++++|.++.. |.   ..++|+.|++
T Consensus       202 ~~~~LdLs~~~-Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP-~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L  269 (788)
T PRK15387        202 GNAVLNVGESG-LT-TLPDCLP--AHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI  269 (788)
T ss_pred             CCcEEEcCCCC-CC-cCCcchh--cCCCEEEccCCcCCCCC-C---CCCCCcEEEecCCccCcc-cC---cccccceeec
Confidence            34556666542 32 1233332  35666666666665321 1   235666666666666542 21   2345666666


Q ss_pred             CCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchH
Q 010952          230 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS  309 (497)
Q Consensus       230 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~  309 (497)
                      ++|.+... +.   ..+.|+.|++++|.+... +.   ..++|+.|++++|.+...+.    ...+|+.|++.+|.+...
T Consensus       270 s~N~L~~L-p~---lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L~~L  337 (788)
T PRK15387        270 FSNPLTHL-PA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSL  337 (788)
T ss_pred             cCCchhhh-hh---chhhcCEEECcCCccccc-cc---cccccceeECCCCccccCCC----CcccccccccccCccccc
Confidence            66655432 11   124556666666655532 11   23456666666665543211    123455566666555431


Q ss_pred             HHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhcc
Q 010952          310 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF  389 (497)
Q Consensus       310 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  389 (497)
                      . .   ..++|+.|++++|.+.... .   ..++|+.|++.+|+++... .   ...+|+.|++++|.++.. |.   ..
T Consensus       338 P-~---lp~~Lq~LdLS~N~Ls~LP-~---lp~~L~~L~Ls~N~L~~LP-~---l~~~L~~LdLs~N~Lt~L-P~---l~  401 (788)
T PRK15387        338 P-T---LPSGLQELSVSDNQLASLP-T---LPSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTSL-PV---LP  401 (788)
T ss_pred             c-c---cccccceEecCCCccCCCC-C---CCcccceehhhccccccCc-c---cccccceEEecCCcccCC-CC---cc
Confidence            1 1   1135666666666554321 1   1235555666665555321 1   123566666666655532 11   13


Q ss_pred             CCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhh
Q 010952          390 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL  459 (497)
Q Consensus       390 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l  459 (497)
                      ++|+.|++++|.+..+. ..   ..+|+.|++++| .++. +|..+.++++|+.|++++|++++..+..+
T Consensus       402 s~L~~LdLS~N~LssIP-~l---~~~L~~L~Ls~N-qLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        402 SELKELMVSGNRLTSLP-ML---PSGLLSLSVYRN-QLTR-LPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             cCCCEEEccCCcCCCCC-cc---hhhhhhhhhccC-cccc-cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            45666666666655431 11   234555666665 4543 34455556666666666666655444433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.60  E-value=6.8e-15  Score=146.64  Aligned_cols=263  Identities=21%  Similarity=0.109  Sum_probs=121.0

Q ss_pred             CCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEcc
Q 010952          127 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE  206 (497)
Q Consensus       127 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  206 (497)
                      -..|+++++ .+...|..+.  ++|+.|++.+|. ++.. +.   ..++|++|++++|.++.. +.   ..++|+.|+++
T Consensus       203 ~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~-Lt~L-P~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~Ls  270 (788)
T PRK15387        203 NAVLNVGES-GLTTLPDCLP--AHITTLVIPDNN-LTSL-PA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIF  270 (788)
T ss_pred             CcEEEcCCC-CCCcCCcchh--cCCCEEEccCCc-CCCC-CC---CCCCCcEEEecCCccCcc-cC---cccccceeecc
Confidence            445555553 2333443332  255566655532 2211 11   235566666665555532 11   12455556666


Q ss_pred             CCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhH
Q 010952          207 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG  286 (497)
Q Consensus       207 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~  286 (497)
                      +|.+.. ++..   ..+|+.|++++|.+... +.   ..++|+.|++++|.+... +.   ...+|+.|++++|.+...+
T Consensus       271 ~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~~LP  338 (788)
T PRK15387        271 SNPLTH-LPAL---PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSLP  338 (788)
T ss_pred             CCchhh-hhhc---hhhcCEEECcCCccccc-cc---cccccceeECCCCccccC-CC---CcccccccccccCcccccc
Confidence            555543 2221   23455556665555432 11   134566666665555431 11   1234555555555544321


Q ss_pred             HHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCC
Q 010952          287 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT  366 (497)
Q Consensus       287 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  366 (497)
                      .    ...+|++|++++|.+.... .   ..++|+.|++.+|.+... +.   ...+|+.|++++|.++....    ..+
T Consensus       339 ~----lp~~Lq~LdLS~N~Ls~LP-~---lp~~L~~L~Ls~N~L~~L-P~---l~~~L~~LdLs~N~Lt~LP~----l~s  402 (788)
T PRK15387        339 T----LPSGLQELSVSDNQLASLP-T---LPSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTSLPV----LPS  402 (788)
T ss_pred             c----cccccceEecCCCccCCCC-C---CCcccceehhhccccccC-cc---cccccceEEecCCcccCCCC----ccc
Confidence            1    1134566666655554321 1   123455555555554421 11   12345566666655553211    124


Q ss_pred             CCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHh
Q 010952          367 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI  435 (497)
Q Consensus       367 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l  435 (497)
                      +|+.|++++|.+... |..   +.+|+.|++++|+++.+ |..+..+++|+.|++++| .+++..+..+
T Consensus       403 ~L~~LdLS~N~LssI-P~l---~~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N-~Ls~~~~~~L  465 (788)
T PRK15387        403 ELKELMVSGNRLTSL-PML---PSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN-PLSERTLQAL  465 (788)
T ss_pred             CCCEEEccCCcCCCC-Ccc---hhhhhhhhhccCccccc-ChHHhhccCCCeEECCCC-CCCchHHHHH
Confidence            556666666655542 211   23455556666655543 344555556666666666 4555444443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.58  E-value=5.9e-15  Score=130.90  Aligned_cols=339  Identities=26%  Similarity=0.402  Sum_probs=175.8

Q ss_pred             CchHHHHHHHHhhhhhhccChhhHHHHhhhhcCCCCCchhHHHHHHhcCCceeEEEeeCCCCC--hHHHH-HhcCC-CCc
Q 010952            2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT--DSGLI-HLKDC-SNL   77 (497)
Q Consensus         2 lp~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~--~~~~~-~l~~~-~~L   77 (497)
                      ||+|+...||+.+      +..++..   |.    +.+..|-..+. .....+++++......  +.+.. .+.+| ..|
T Consensus        75 LPpEl~lkvFS~L------Dtksl~r---~a----~~c~~~n~~Al-D~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~l  140 (483)
T KOG4341|consen   75 LPPELLLKVFSML------DTKSLCR---AA----QCCTMWNKLAL-DGSCWQHIDLFTFQRDVDGGVVENMISRCGGFL  140 (483)
T ss_pred             CCHHHHHHHHHHH------hHHHHHH---HH----HHHHHhhhhhh-ccccceeeehhcchhcCCCcceehHhhhhcccc
Confidence            7999999999997      4444433   22    45666654443 4678888888775432  22222 23444 478


Q ss_pred             CEEEccCccccChhHHHHh-hCCCCCCEEEcCCCCCCChHHHHHHh-CCCCCCEEeccCcccccccc--ccccCCCCCCE
Q 010952           78 QSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGL--VNLKGLMKLES  153 (497)
Q Consensus        78 ~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~  153 (497)
                      +.|.+++|..+.......+ ..++++++|.+.+|..+++.....++ .|++|++|++..|..++...  .....|++|++
T Consensus       141 k~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~  220 (483)
T KOG4341|consen  141 KELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKY  220 (483)
T ss_pred             ccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHH
Confidence            8888888876655555544 36788888888888777776666665 47777777777766555433  12345667777


Q ss_pred             EeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCCh-H-HHHHhhCCCCCcEEEcCC
Q 010952          154 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-A-CLDSLSALGSLFYLNLNR  231 (497)
Q Consensus       154 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~-~~~~l~~l~~L~~L~l~~  231 (497)
                      |++++|+.+.+...+.                       ..++++.++.+...||.-.+ . +...-+.+..+..+++.+
T Consensus       221 lNlSwc~qi~~~gv~~-----------------------~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~  277 (483)
T KOG4341|consen  221 LNLSWCPQISGNGVQA-----------------------LQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQH  277 (483)
T ss_pred             hhhccCchhhcCcchH-----------------------HhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhh
Confidence            7777766555422221                       12334444444444542211 1 111112334444555444


Q ss_pred             CCC-ChhHhHhh-hcCCCCCEEEccCCC-CChhHHHHh-hCCCCcCEEeCCCC-CCCHhHHHHHh-CCCCCCEeeccCcc
Q 010952          232 CQL-SDDGCEKF-SKIGSLKVLNLGFNE-ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDTQ  305 (497)
Q Consensus       232 ~~~-~~~~~~~l-~~l~~L~~L~l~~~~-~~~~~~~~l-~~~~~L~~L~l~~~-~l~~~~~~~l~-~~~~L~~L~l~~~~  305 (497)
                      |.. ++...-.+ ..+..|+.++.+++. +++.....+ .++++|+.+-+..| ++++.....++ +++.|+.+++..+.
T Consensus       278 c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~  357 (483)
T KOG4341|consen  278 CNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG  357 (483)
T ss_pred             hccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence            432 21111111 234556666665543 222222222 34566666666666 33333333333 34556666665554


Q ss_pred             cchHH-HHhh-cCCCCCCEEeccCC-CCChHHHHHhc----CCCCCcEEEcCCCCC-CHhHHHHhcCCCCCcEEEecCCC
Q 010952          306 VGSSG-LRHL-SGLTNLESINLSFT-GISDGSLRKLA----GLSSLKSLNLDARQI-TDTGLAALTSLTGLTHLDLFGAR  377 (497)
Q Consensus       306 ~~~~~-~~~l-~~~~~L~~L~l~~~-~~~~~~~~~l~----~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~  377 (497)
                      ..... ...+ .+++.|+.+.++.| .+++.+...+.    ....++.+.++++.. ++.....+..+++|+.+++.+|+
T Consensus       358 ~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  358 LITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             eehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            32221 2222 34566666666655 23333222222    234455555555432 33333444555555555555553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.53  E-value=1.3e-13  Score=119.81  Aligned_cols=192  Identities=23%  Similarity=0.307  Sum_probs=113.4

Q ss_pred             CCCCCCEeeccCcccchHHHH----hhcCCCCCCEEeccCCCCChHHHHH-------------hcCCCCCcEEEcCCCCC
Q 010952          292 GLCNLKCLELSDTQVGSSGLR----HLSGLTNLESINLSFTGISDGSLRK-------------LAGLSSLKSLNLDARQI  354 (497)
Q Consensus       292 ~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~-------------l~~~~~L~~L~l~~~~~  354 (497)
                      .+|+|+.++|++|-++...+.    .+..+..|++|.+.+|.++......             .+.-+.|+.+....|++
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            344555555555544433222    2234555555555555554322222             22346677777777766


Q ss_pred             CHhHH----HHhcCCCCCcEEEecCCCcChHH----HHHhhccCCCCeeeecCCCCChhhHHhh----hhcCCCCeeccc
Q 010952          355 TDTGL----AALTSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLS  422 (497)
Q Consensus       355 ~~~~~----~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~l~~~~~~~~----~~l~~L~~L~l~  422 (497)
                      .+.+.    ..+...+.|+.+.++.|.+....    ...+.+|++|+.|++..|-++..+...+    +..++|++++++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            55433    33445677777777777665433    2345677777777777777766554433    345777788888


Q ss_pred             CCCCCChhHHHHh----h-cCCCCcEEEeeCCccChhHH----HhhcCCcccceeecccCCC--CHHHHHHHh
Q 010952          423 QNCNLTDKTLELI----S-GLTGLVSLNVSNSRITSAGL----RHLKPLKNLRSLTLESCKV--TANDIKRLQ  484 (497)
Q Consensus       423 ~~~~l~~~~~~~l----~-~~~~L~~L~l~~~~l~~~~~----~~l~~~~~L~~L~l~~~~~--~~~~~~~l~  484 (497)
                      +| .+.......+    . ..|+|+.|.+.+|.++....    .++...|.|+.|++++|.+  .+.++..+.
T Consensus       250 dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~  321 (382)
T KOG1909|consen  250 DC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIA  321 (382)
T ss_pred             cc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHH
Confidence            87 5655443332    2 46788888888887765433    2335577888888888887  555665554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.52  E-value=3.8e-14  Score=142.26  Aligned_cols=248  Identities=21%  Similarity=0.234  Sum_probs=112.4

Q ss_pred             CCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEcc
Q 010952          175 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG  254 (497)
Q Consensus       175 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  254 (497)
                      +...|++.+..++.. |..+.  +.++.|++++|.+.. +|..+.  ++|+.|++++|.+... +..+  .++|+.|+++
T Consensus       179 ~~~~L~L~~~~LtsL-P~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~LtsL-P~~l--~~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLTTI-PACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTSI-PATL--PDTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcCcC-Ccccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccccC-Chhh--hccccEEECc
Confidence            345566665555532 22221  356666666666654 233222  3666666666665532 2222  2356666666


Q ss_pred             CCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHH
Q 010952          255 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS  334 (497)
Q Consensus       255 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  334 (497)
                      +|.+... +..+.  .+|+.|++++|.+... +..+  .++|+.|++++|.+.... ..+  .++|+.|++++|.+....
T Consensus       250 ~N~L~~L-P~~l~--s~L~~L~Ls~N~L~~L-P~~l--~~sL~~L~Ls~N~Lt~LP-~~l--p~sL~~L~Ls~N~Lt~LP  320 (754)
T PRK15370        250 INRITEL-PERLP--SALQSLDLFHNKISCL-PENL--PEELRYLSVYDNSIRTLP-AHL--PSGITHLNVQSNSLTALP  320 (754)
T ss_pred             CCccCcC-ChhHh--CCCCEEECcCCccCcc-cccc--CCCCcEEECCCCccccCc-ccc--hhhHHHHHhcCCccccCC
Confidence            6665532 22221  3566666666555432 2111  135666666665544321 111  124555555555444211


Q ss_pred             HHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcC
Q 010952          335 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS  414 (497)
Q Consensus       335 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~  414 (497)
                       ..  -.++|+.|.+++|.++... ..+  .++|+.|++++|+++.. |..+  .++|+.|++++|.+.... ..+.  .
T Consensus       321 -~~--l~~sL~~L~Ls~N~Lt~LP-~~l--~~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt~LP-~~l~--~  388 (754)
T PRK15370        321 -ET--LPPGLKTLEAGENALTSLP-ASL--PPELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALTNLP-ENLP--A  388 (754)
T ss_pred             -cc--ccccceeccccCCccccCC-hhh--cCcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCCCCC-HhHH--H
Confidence             11  1245555555555544321 111  24555555555555432 2222  245555555555555432 2221  2


Q ss_pred             CCCeecccCCCCCChh---HHHHhhcCCCCcEEEeeCCccCh
Q 010952          415 SLTLLNLSQNCNLTDK---TLELISGLTGLVSLNVSNSRITS  453 (497)
Q Consensus       415 ~L~~L~l~~~~~l~~~---~~~~l~~~~~L~~L~l~~~~l~~  453 (497)
                      +|+.|++++| ++...   ++.....++.+..|++.+|++..
T Consensus       389 sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        389 ALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             HHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            4555555555 33321   12222233445555555555443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.48  E-value=6.1e-13  Score=115.69  Aligned_cols=289  Identities=23%  Similarity=0.296  Sum_probs=157.8

Q ss_pred             hcCCCCcEEEccCCCCChHHH----HHhhCCCCCcEEEcCCCC---CChhHh-------HhhhcCCCCCEEEccCCCCCh
Q 010952          195 KGLQKLTLLNLEGCPVTAACL----DSLSALGSLFYLNLNRCQ---LSDDGC-------EKFSKIGSLKVLNLGFNEITD  260 (497)
Q Consensus       195 ~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~---~~~~~~-------~~l~~l~~L~~L~l~~~~~~~  260 (497)
                      .....++++++++|.+.....    ..+.+.++|+..++++-.   .....+       ..+..+++|++++++.|.+..
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            344455555555555433222    223344555555554422   111112       223345567777777665543


Q ss_pred             h----HHHHhhCCCCcCEEeCCCCCCCHhHHHHHh-------------CCCCCCEeeccCcccchH----HHHhhcCCCC
Q 010952          261 E----CLVHLKGLTNLESLNLDSCGIGDEGLVNLT-------------GLCNLKCLELSDTQVGSS----GLRHLSGLTN  319 (497)
Q Consensus       261 ~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~-------------~~~~L~~L~l~~~~~~~~----~~~~l~~~~~  319 (497)
                      .    ....+.++..|+.|++.+|.+.......++             .-++|+.+....|.+...    ....+...+.
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~  186 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT  186 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence            2    223455677788888877776554433321             235677777777765442    2234455677


Q ss_pred             CCEEeccCCCCChHH----HHHhcCCCCCcEEEcCCCCCCHhHH----HHhcCCCCCcEEEecCCCcChHHHHHh-----
Q 010952          320 LESINLSFTGISDGS----LRKLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDSGAAYL-----  386 (497)
Q Consensus       320 L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~l-----  386 (497)
                      |+.+.+..|.+....    ...+..++.|+.|++.+|.++..+.    .+++.+++|+.|++++|.+...+..++     
T Consensus       187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~  266 (382)
T KOG1909|consen  187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALK  266 (382)
T ss_pred             cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHh
Confidence            777777777654322    2445567778888887777766544    334466778888888887665544433     


Q ss_pred             hccCCCCeeeecCCCCChhhHHhh----hhcCCCCeecccCCCCC--ChhHHH-HhhcC----CCCcEEEeeCCccChhH
Q 010952          387 RNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCNL--TDKTLE-LISGL----TGLVSLNVSNSRITSAG  455 (497)
Q Consensus       387 ~~~~~L~~L~l~~~~l~~~~~~~~----~~l~~L~~L~l~~~~~l--~~~~~~-~l~~~----~~L~~L~l~~~~l~~~~  455 (497)
                      ...|+|+++.+.+|.|+......+    ...+.|+.|+|++| ++  .+.... ....+    ..+.+.+-+.+.+.+..
T Consensus       267 ~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN-~l~e~de~i~ei~~~~~~~~~~~~~~~~s~e~l~~eg  345 (382)
T KOG1909|consen  267 ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN-RLGEKDEGIDEIASKFDTAHVLLEDIDDSEEELEREG  345 (382)
T ss_pred             ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc-cccccchhHHHHHHhcccccccchhhchhHHHHHhhh
Confidence            346788888888887776544332    33577888888888 55  222222 22222    22334444444444332


Q ss_pred             HH----hhcCCcccceeecccCCCCHHHHHHHh
Q 010952          456 LR----HLKPLKNLRSLTLESCKVTANDIKRLQ  484 (497)
Q Consensus       456 ~~----~l~~~~~L~~L~l~~~~~~~~~~~~l~  484 (497)
                      -+    .......=+.+++.++.+++...+++.
T Consensus       346 ~e~e~~~~~~~~t~~e~~ed~e~ie~e~~ee~~  378 (382)
T KOG1909|consen  346 EEDEEEEVEKKETFKELNEDGEVIEEEGIEELK  378 (382)
T ss_pred             hhHHHHHHHhcCcchhhcccccccchhHHHHhh
Confidence            21    122334445566666666666666553

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.45  E-value=4.2e-13  Score=134.77  Aligned_cols=227  Identities=15%  Similarity=0.154  Sum_probs=111.8

Q ss_pred             CCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEc
Q 010952          174 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL  253 (497)
Q Consensus       174 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  253 (497)
                      ++|+.|++++|.++.. +..+.  ++|++|++++|.+.. +|..+.  .+|+.|++++|.+... +..+.  .+|+.|++
T Consensus       199 ~~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~~L-P~~l~--s~L~~L~L  269 (754)
T PRK15370        199 EQITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRITEL-PERLP--SALQSLDL  269 (754)
T ss_pred             cCCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccCcC-ChhHh--CCCCEEEC
Confidence            3566666666666532 22221  356666666666553 233222  3566666666665532 22222  35666666


Q ss_pred             cCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChH
Q 010952          254 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG  333 (497)
Q Consensus       254 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  333 (497)
                      ++|.+.. .+..+  .++|+.|++++|.+...+. .+  .++|+.|++++|.+.... ..  ..++|+.|++++|.++..
T Consensus       270 s~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~LP~-~l--p~sL~~L~Ls~N~Lt~LP-~~--l~~sL~~L~Ls~N~Lt~L  340 (754)
T PRK15370        270 FHNKISC-LPENL--PEELRYLSVYDNSIRTLPA-HL--PSGITHLNVQSNSLTALP-ET--LPPGLKTLEAGENALTSL  340 (754)
T ss_pred             cCCccCc-ccccc--CCCCcEEECCCCccccCcc-cc--hhhHHHHHhcCCccccCC-cc--ccccceeccccCCccccC
Confidence            6665553 22222  1356666666665543221 11  134566666666554321 11  124566666666655432


Q ss_pred             HHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhh---HHhh
Q 010952          334 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG---VKHI  410 (497)
Q Consensus       334 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~---~~~~  410 (497)
                       +..+  .++|+.|++++|.++.. +..+  .++|+.|++++|.++..++ .+  ...|+.|++++|++....   +...
T Consensus       341 -P~~l--~~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt~LP~-~l--~~sL~~LdLs~N~L~~LP~sl~~~~  411 (754)
T PRK15370        341 -PASL--PPELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALTNLPE-NL--PAALQIMQASRNNLVRLPESLPHFR  411 (754)
T ss_pred             -Chhh--cCcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCCCCCH-hH--HHHHHHHhhccCCcccCchhHHHHh
Confidence             2222  24666666666665532 2222  2466666666666654322 22  124666666666665431   1112


Q ss_pred             hhcCCCCeecccCCCCCC
Q 010952          411 KDLSSLTLLNLSQNCNLT  428 (497)
Q Consensus       411 ~~l~~L~~L~l~~~~~l~  428 (497)
                      ..++++..+++.+| .++
T Consensus       412 ~~~~~l~~L~L~~N-pls  428 (754)
T PRK15370        412 GEGPQPTRIIVEYN-PFS  428 (754)
T ss_pred             hcCCCccEEEeeCC-Ccc
Confidence            22355666666666 444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=1.2e-13  Score=117.33  Aligned_cols=264  Identities=21%  Similarity=0.228  Sum_probs=141.4

Q ss_pred             CCchHHHHHHHHhhhhhhccChhhHHHHhhhhcCCCCCchhHHHHHHhcCCceeEEEeeCCCCChHHHHHhcCCCCcCEE
Q 010952            1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSL   80 (497)
Q Consensus         1 ~lp~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L   80 (497)
                      .||+|++..||+-|-+...      .+..       .+|.+|-+.. .+-...+.+|+.+.++.......+.+ ....++
T Consensus       100 slpDEill~IFs~L~kk~L------L~~~-------~VC~Rfyr~~-~de~lW~~lDl~~r~i~p~~l~~l~~-rgV~v~  164 (419)
T KOG2120|consen  100 SLPDEILLGIFSCLCKKEL------LKVS-------GVCKRFYRLA-SDESLWQTLDLTGRNIHPDVLGRLLS-RGVIVF  164 (419)
T ss_pred             cCCHHHHHHHHHhccHHHH------HHHH-------HHHHHHhhcc-ccccceeeeccCCCccChhHHHHHHh-CCeEEE
Confidence            4899999999999844333      2222       3344443322 23356777777776665444443321 122233


Q ss_pred             EccCccccChh-HHHHhhCC-CCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEeccC
Q 010952           81 DFNFCIQISDG-GLEHLRGL-SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW  158 (497)
Q Consensus        81 ~l~~~~~~~~~-~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  158 (497)
                      .+... ...+. ..+.+.-+ ..|++|+|+...+.....-..++.|.+|+.|.+.+..--......+++-.+|+.|+++.
T Consensus       165 Rlar~-~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm  243 (419)
T KOG2120|consen  165 RLARS-FMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM  243 (419)
T ss_pred             Ecchh-hhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence            33221 11111 11122111 24677777765544444455566677777777766432222224456666677777777


Q ss_pred             CCCCCccccc-cccCCCCCCEEEeeccccCchhHHhh-h-cCCCCcEEEccCCC--CC-hHHHHHhhCCCCCcEEEcCCC
Q 010952          159 CNCITDSDMK-PLSGLTNLKSLQISCSKVTDSGIAYL-K-GLQKLTLLNLEGCP--VT-AACLDSLSALGSLFYLNLNRC  232 (497)
Q Consensus       159 ~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l-~-~l~~L~~L~l~~~~--~~-~~~~~~l~~l~~L~~L~l~~~  232 (497)
                      |+.++..... -+.+|+.|.+|+++++.........+ . --++|..|+++|+.  +. ..+....+.+++|..|++++|
T Consensus       244 ~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~  323 (419)
T KOG2120|consen  244 CSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS  323 (419)
T ss_pred             ccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence            6666544433 23466777777777666554333322 1 12466677777762  11 112223356777777777776


Q ss_pred             CC-ChhHhHhhhcCCCCCEEEccCCCCCh-hHHHHhhCCCCcCEEeCCCC
Q 010952          233 QL-SDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSC  280 (497)
Q Consensus       233 ~~-~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~  280 (497)
                      .. .......|.+++.|+++.++.|.... ...-.+...|.|.+|++.++
T Consensus       324 v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  324 VMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             cccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            53 33334455667777777777764331 12223456677888887766

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.42  E-value=4.1e-13  Score=119.39  Aligned_cols=153  Identities=34%  Similarity=0.494  Sum_probs=90.5

Q ss_pred             CCCCCcEEEcCCC-CCCHhHHHHhc-CCCCCcEEEecCCC-cChHHHHHh-hccCCCCeeeecCCCCChhh-HHhh-hhc
Q 010952          340 GLSSLKSLNLDAR-QITDTGLAALT-SLTGLTHLDLFGAR-ITDSGAAYL-RNFKNLRSLEICGGGLTDAG-VKHI-KDL  413 (497)
Q Consensus       340 ~~~~L~~L~l~~~-~~~~~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~l-~~~~~L~~L~l~~~~l~~~~-~~~~-~~l  413 (497)
                      .+..|+.+..+++ .+++.....++ ++++|+.+.+..|+ +++.....+ .+++.|+.+++..+...... ..++ ..+
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            3455555555553 34444343333 45666666666654 333333333 34566666666665433222 2222 345


Q ss_pred             CCCCeecccCCCCCChhHHHHhh----cCCCCcEEEeeCCc-cChhHHHhhcCCcccceeecccC-CCCHHHHHHHhhcC
Q 010952          414 SSLTLLNLSQNCNLTDKTLELIS----GLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQSRD  487 (497)
Q Consensus       414 ~~L~~L~l~~~~~l~~~~~~~l~----~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~  487 (497)
                      +.|+++.++.|..+++.....+.    ....|+.+.+++|+ +++...+.+..+++|+.+++.+| .++...++.+. .+
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~-~~  450 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFA-TH  450 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHH-hh
Confidence            77777777777666665444443    34567777777776 45556677777888888888888 77778888877 77


Q ss_pred             CCCCcc
Q 010952          488 LPNLVS  493 (497)
Q Consensus       488 ~p~L~~  493 (497)
                      +|+++.
T Consensus       451 lp~i~v  456 (483)
T KOG4341|consen  451 LPNIKV  456 (483)
T ss_pred             Ccccee
Confidence            787765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=5.6e-13  Score=113.27  Aligned_cols=197  Identities=22%  Similarity=0.250  Sum_probs=149.9

Q ss_pred             CCCEeeccCcccchHH-HHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCC-CCCHhHHH-HhcCCCCCcEE
Q 010952          295 NLKCLELSDTQVGSSG-LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLA-ALTSLTGLTHL  371 (497)
Q Consensus       295 ~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~-~~~~~~~L~~L  371 (497)
                      .+++++++...++... ...+..|.+|+.|.+.++.+.+.+...+++..+|+.++++.+ .++..+.. .+..|..|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            5888888888777643 345677889999999999999888888999999999999885 66766553 45689999999


Q ss_pred             EecCCCcChHHHHHh--hccCCCCeeeecCCC--CChhh-HHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEe
Q 010952          372 DLFGARITDSGAAYL--RNFKNLRSLEICGGG--LTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV  446 (497)
Q Consensus       372 ~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~--l~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l  446 (497)
                      +++.|.........+  .--++|+.|+++|+.  +.... ......+|+|..|+|++|-.++......+-+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            999998665443322  345789999999863  22222 3344678999999999997788888888999999999999


Q ss_pred             eCCc-cChhHHHhhcCCcccceeecccCCCCHHHHHHHhhcCCCCCcc
Q 010952          447 SNSR-ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS  493 (497)
Q Consensus       447 ~~~~-l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p~L~~  493 (497)
                      +.|. +.....-.+...|+|.+|++.+|- ++..++-+. ..+|+|+.
T Consensus       346 sRCY~i~p~~~~~l~s~psl~yLdv~g~v-sdt~mel~~-e~~~~lki  391 (419)
T KOG2120|consen  346 SRCYDIIPETLLELNSKPSLVYLDVFGCV-SDTTMELLK-EMLSHLKI  391 (419)
T ss_pred             hhhcCCChHHeeeeccCcceEEEEecccc-CchHHHHHH-HhCccccc
Confidence            9996 333333456889999999999984 344455554 67888764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=4e-13  Score=120.14  Aligned_cols=209  Identities=25%  Similarity=0.280  Sum_probs=99.4

Q ss_pred             hCCCCcCEEeCCCCCCCHhHH-HHHhCCCCCCEeeccCcccch--HHHHhhcCCCCCCEEeccCCCCChHHHH-HhcCCC
Q 010952          267 KGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGS--SGLRHLSGLTNLESINLSFTGISDGSLR-KLAGLS  342 (497)
Q Consensus       267 ~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~l~~~~  342 (497)
                      .++.+|+.+.+.++.....+. .....+++++.|+++.|-+..  .....+..+|+|+.|+++.|.+...... .-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            345666777776664432221 233456666777776664433  2333445566666666666644321110 011345


Q ss_pred             CCcEEEcCCCCCCHhHH-HHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhh-HHhhhhcCCCCeec
Q 010952          343 SLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLN  420 (497)
Q Consensus       343 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~  420 (497)
                      .|+.|.++.|.++-... .....+|+|+.|++..|............+..|+.|++++|++.+.. ....+.++.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            55666666665553322 22234566666666555311111111233445555666655544331 12234455555556


Q ss_pred             ccCCCCCChhHHHH------hhcCCCCcEEEeeCCccChh-HHHhhcCCcccceeecccCCCC
Q 010952          421 LSQNCNLTDKTLEL------ISGLTGLVSLNVSNSRITSA-GLRHLKPLKNLRSLTLESCKVT  476 (497)
Q Consensus       421 l~~~~~l~~~~~~~------l~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~~~~~  476 (497)
                      ++.| ++++.....      ...+++|++|++..|++.+. ....+..+++|+.+.+..+.++
T Consensus       278 ls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  278 LSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            6555 444432111      13455556666655555332 1233444555555555555443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.28  E-value=3.2e-14  Score=110.79  Aligned_cols=136  Identities=18%  Similarity=0.176  Sum_probs=83.3

Q ss_pred             hhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCC
Q 010952           96 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN  175 (497)
Q Consensus        96 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~  175 (497)
                      +..+.+|+.|++++|++  ...|..++.+++|+.|+++- ..+...+..++.+|.|++|++.+++--....+..+-.|..
T Consensus        52 ia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~t  128 (264)
T KOG0617|consen   52 IAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTT  128 (264)
T ss_pred             HHHhhhhhhhhcccchh--hhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhccccccccccCCcchhHHHH
Confidence            34444555555555442  33455555555555555553 3455556666666777777776655444455556666677


Q ss_pred             CCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCCh
Q 010952          176 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD  236 (497)
Q Consensus       176 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  236 (497)
                      |+.|.++++.+. ..|..++++++|+.|.+..|.+.. .|..++.+..|++|+|.+|.+..
T Consensus       129 lralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  129 LRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRLTV  187 (264)
T ss_pred             HHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccceeee
Confidence            777777777666 345556777777777777776654 56667777777777777776654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=2.9e-12  Score=114.72  Aligned_cols=201  Identities=18%  Similarity=0.083  Sum_probs=93.8

Q ss_pred             cCCCCCchhHHHHHHhcCCceeEEEeeCCCCC--hHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCC
Q 010952           33 LQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT--DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN  110 (497)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  110 (497)
                      ++..++.+.........+++++.|++++|-+.  ..+.....++|+|+.|+++.|.-........-..+++|+.|.++.|
T Consensus       128 Ldn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~C  207 (505)
T KOG3207|consen  128 LDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSC  207 (505)
T ss_pred             ecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccC
Confidence            33334444333223344566666666665333  1223334566666666666653111111111124455666666666


Q ss_pred             CCCChHHHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchh
Q 010952          111 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG  190 (497)
Q Consensus       111 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  190 (497)
                      .............+|+|+.|.+..|...........-+..|+.|++++++.+........+.++.|+.|+++.+++.+..
T Consensus       208 Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~  287 (505)
T KOG3207|consen  208 GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIA  287 (505)
T ss_pred             CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhc
Confidence            54444444444556666666666553222222333444556666666655555444455555666666666555554322


Q ss_pred             HH------hhhcCCCCcEEEccCCCCChH-HHHHhhCCCCCcEEEcCCCC
Q 010952          191 IA------YLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSLFYLNLNRCQ  233 (497)
Q Consensus       191 ~~------~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~  233 (497)
                      ..      -...+++|++|.+..|++.+. ....+..+++|+.|.+..+.
T Consensus       288 ~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  288 EPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             CCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence            11      123345555555555544221 11223334444444444433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.23  E-value=5.1e-14  Score=109.65  Aligned_cols=163  Identities=20%  Similarity=0.148  Sum_probs=134.0

Q ss_pred             cCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCC
Q 010952           49 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV  128 (497)
Q Consensus        49 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  128 (497)
                      .++++++|.+|++.++ .++..+..+.+|++|++.++ ++.. .+..++.++.|++|++.-|..  ...|..|+.+|.|+
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nn-qie~-lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~le  105 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNN-QIEE-LPTSISSLPKLRILNVGMNRL--NILPRGFGSFPALE  105 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccc-hhhh-cChhhhhchhhhheecchhhh--hcCccccCCCchhh
Confidence            3679999999999986 67778899999999999997 5654 688899999999999998874  56789999999999


Q ss_pred             EEeccCccc-cccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccC
Q 010952          129 KLDLERCTR-IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG  207 (497)
Q Consensus       129 ~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  207 (497)
                      +|++.-+.. -...+..+-.+..|+.|.++.+...  ..+..++++++|+.|.+.++.+- ..|..++.+..|+.|.+.+
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe--~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE--ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc--cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence            999986542 2345667777889999999986533  46788999999999999988866 4678888999999999999


Q ss_pred             CCCChHHHHHhhC
Q 010952          208 CPVTAACLDSLSA  220 (497)
Q Consensus       208 ~~~~~~~~~~l~~  220 (497)
                      |+++. .|..+++
T Consensus       183 nrl~v-lppel~~  194 (264)
T KOG0617|consen  183 NRLTV-LPPELAN  194 (264)
T ss_pred             ceeee-cChhhhh
Confidence            99876 3444444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.09  E-value=4.3e-11  Score=97.74  Aligned_cols=128  Identities=27%  Similarity=0.322  Sum_probs=43.6

Q ss_pred             CCCCcEEEcCCCCCCHhHHHHhc-CCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCee
Q 010952          341 LSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL  419 (497)
Q Consensus       341 ~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  419 (497)
                      ..++++|++.++.++..  +.++ .+.+|+.|++++|.++..  ..+..++.|++|++++|.|+.........+|+|++|
T Consensus        18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             ccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            34566666666666552  3343 356677777777766653  234556777777777777766533222346777777


Q ss_pred             cccCCCCCChh-HHHHhhcCCCCcEEEeeCCccChhHH---HhhcCCcccceeecccC
Q 010952          420 NLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLESC  473 (497)
Q Consensus       420 ~l~~~~~l~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~---~~l~~~~~L~~L~l~~~  473 (497)
                      ++++| ++.+. ....++.+++|+.|++.+||+.+..-   ..+..+|+|+.||-..-
T Consensus        94 ~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   94 YLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             E-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             ECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            77777 55442 23456677778888888777764321   23456778887776543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.07  E-value=4.9e-11  Score=97.41  Aligned_cols=129  Identities=26%  Similarity=0.378  Sum_probs=55.3

Q ss_pred             hcCCCCCcEEEecCCCcChHHHHHhh-ccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCC
Q 010952          362 LTSLTGLTHLDLFGARITDSGAAYLR-NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG  440 (497)
Q Consensus       362 ~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~  440 (497)
                      +.+..++++|++.+|.+...  +.+. .+.+|+.|++++|.|...  ..+..++.|++|++++| .++.........+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNN-RISSISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred             cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCC-CCCccccchHHhCCc
Confidence            44566899999999998764  2344 578999999999999976  36777899999999999 888753322246899


Q ss_pred             CcEEEeeCCccChh-HHHhhcCCcccceeecccCCCCH-HHHHHHhhcCCCCCccCC
Q 010952          441 LVSLNVSNSRITSA-GLRHLKPLKNLRSLTLESCKVTA-NDIKRLQSRDLPNLVSFR  495 (497)
Q Consensus       441 L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~p~L~~l~  495 (497)
                      |+.|++++|.+.+. ....+..+++|+.|++.+|+++. ...+......+|+|+.|+
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            99999999998763 23667889999999999999875 455666667899999875

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.01  E-value=1.1e-10  Score=119.49  Aligned_cols=317  Identities=21%  Similarity=0.225  Sum_probs=183.7

Q ss_pred             CceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccc-cChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCE
Q 010952           51 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ-ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  129 (497)
Q Consensus        51 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  129 (497)
                      ..+|++.+-++.+.  ....-..++.|++|-+..+.. +.....+.|.+++.|++|++++|. .-...|..++.+.+||+
T Consensus       523 ~~~rr~s~~~~~~~--~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~-~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE--HIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS-SLSKLPSSIGELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchh--hccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC-ccCcCChHHhhhhhhhc
Confidence            45677777776542  222225677899998888642 444455667889999999999886 34567889999999999


Q ss_pred             EeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccc--cCchhHHhhhcCCCCcEEEccC
Q 010952          130 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK--VTDSGIAYLKGLQKLTLLNLEG  207 (497)
Q Consensus       130 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~l~~l~~L~~L~l~~  207 (497)
                      |++++ +.+...|..++++..|.+|++..+...... +.....+++|++|.+....  ........+..+.+|+.+.+..
T Consensus       600 L~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  600 LDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             ccccC-CCccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            99998 567788888999999999999876655432 3444568999999886543  2333445556666666666644


Q ss_pred             CCCChHHHHHhhCCCCCc----EEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhh------CCCCcCEEeC
Q 010952          208 CPVTAACLDSLSALGSLF----YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK------GLTNLESLNL  277 (497)
Q Consensus       208 ~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~------~~~~L~~L~l  277 (497)
                      ...  .....+..+..|+    .+.+.++.. ...+..++.+.+|+.|.+..+.+.........      .++++..+.+
T Consensus       678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~  754 (889)
T KOG4658|consen  678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI  754 (889)
T ss_pred             chh--HhHhhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence            332  1222333333333    233222222 12234456778888888888776532221111      1233444444


Q ss_pred             CCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChH-HHHHhcCCCCCcEEEcCCCCCCH
Q 010952          278 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQITD  356 (497)
Q Consensus       278 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~  356 (497)
                      ..+.... .+...-..++|+.+.+..+...............+..+.+..+.+... .....+.++.+..+.+..-.+.+
T Consensus       755 ~~~~~~r-~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~  833 (889)
T KOG4658|consen  755 LNCHMLR-DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEE  833 (889)
T ss_pred             hcccccc-ccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhh
Confidence            4442211 111123467888888888766555555555555555555555544332 22333445555555554433222


Q ss_pred             hHHH---HhcCCCCCcEEEecCC
Q 010952          357 TGLA---ALTSLTGLTHLDLFGA  376 (497)
Q Consensus       357 ~~~~---~~~~~~~L~~L~l~~~  376 (497)
                      ....   ....+|.+.++.+.+|
T Consensus       834 ~~ve~~p~l~~~P~~~~~~i~~~  856 (889)
T KOG4658|consen  834 LIVEECPKLGKLPLLSTLTIVGC  856 (889)
T ss_pred             eehhcCcccccCccccccceecc
Confidence            1111   1223555656666665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.99  E-value=7.1e-11  Score=100.83  Aligned_cols=130  Identities=25%  Similarity=0.323  Sum_probs=79.7

Q ss_pred             CCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeec
Q 010952          341 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN  420 (497)
Q Consensus       341 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  420 (497)
                      ...|+++++++|.++.. ...+.-.|.++.|+++.|.+....  .++.+++|+.|++++|.++... .+-.++.++++|.
T Consensus       283 Wq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECV-GWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccccchhhh-hhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhh-hhHhhhcCEeeee
Confidence            34566777777766653 233445677777777777766532  2556777777777777665441 1223456777777


Q ss_pred             ccCCCCCChhHHHHhhcCCCCcEEEeeCCccChh-HHHhhcCCcccceeecccCCCCH
Q 010952          421 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA-GLRHLKPLKNLRSLTLESCKVTA  477 (497)
Q Consensus       421 l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~~~~~~  477 (497)
                      +++| .+.+  ...+..+-+|..|++++|++... ..+.++++|.|+.+.+.+|++..
T Consensus       359 La~N-~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  359 LAQN-KIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhh-hHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            7777 4433  33455666777777777776543 33566777777777777776643

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.97  E-value=3.1e-10  Score=116.25  Aligned_cols=62  Identities=26%  Similarity=0.331  Sum_probs=28.5

Q ss_pred             hhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCC
Q 010952          194 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN  256 (497)
Q Consensus       194 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  256 (497)
                      |..++.|++|++++|.-....|..++.+-+||+|+++++.+. ..|..++++..|.+|++..+
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~  628 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVT  628 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccc
Confidence            444455555555544333334444444445555555444443 23344444444444444443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.96  E-value=2.7e-10  Score=97.37  Aligned_cols=127  Identities=26%  Similarity=0.319  Sum_probs=63.4

Q ss_pred             CCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeC
Q 010952          198 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL  277 (497)
Q Consensus       198 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  277 (497)
                      +.|+.+++++|.++. +.+++.-.|+++.|++++|.+....  .++.+++|+.|++++|.++... ..=..+-++++|.+
T Consensus       284 q~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECV-GWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchhh-hhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhh-hhHhhhcCEeeeeh
Confidence            345666666665544 3344455566666666666554322  2555566666666666554211 11123455555665


Q ss_pred             CCCCCCHhHHHHHhCCCCCCEeeccCcccch-HHHHhhcCCCCCCEEeccCCCC
Q 010952          278 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGI  330 (497)
Q Consensus       278 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~  330 (497)
                      +.|.+.  ....+.++-+|..|++++|++.. +....++++|.|+++.+.+|.+
T Consensus       360 a~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  360 AQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            555432  12233344455555555555443 2234445555555555555543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.90  E-value=1.4e-08  Score=85.82  Aligned_cols=206  Identities=19%  Similarity=0.214  Sum_probs=107.2

Q ss_pred             CCCCcEEEccCCCCChHHHHH----hhCCCCCcEEEcCCCCCC---hhH-------hHhhhcCCCCCEEEccCCCCChh-
Q 010952          197 LQKLTLLNLEGCPVTAACLDS----LSALGSLFYLNLNRCQLS---DDG-------CEKFSKIGSLKVLNLGFNEITDE-  261 (497)
Q Consensus       197 l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~---~~~-------~~~l~~l~~L~~L~l~~~~~~~~-  261 (497)
                      +..+..+++++|.+......+    +++-.+|+..++++-...   +..       ...+.++|+|+..+++.|.+... 
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            445555555555554333322    233345555555442211   111       22344567777777776655432 


Q ss_pred             ---HHHHhhCCCCcCEEeCCCCCCCHhHHHHH-------------hCCCCCCEeeccCcccchH----HHHhhcCCCCCC
Q 010952          262 ---CLVHLKGLTNLESLNLDSCGIGDEGLVNL-------------TGLCNLKCLELSDTQVGSS----GLRHLSGLTNLE  321 (497)
Q Consensus       262 ---~~~~l~~~~~L~~L~l~~~~l~~~~~~~l-------------~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~  321 (497)
                         ..+.++..+.|.+|.+++|.+.......+             +.-|.|+.+....|.+...    ....+.....|+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence               23445667778888888776543322222             1245677777766654321    122233345677


Q ss_pred             EEeccCCCCChHHHH-----HhcCCCCCcEEEcCCCCCCHhHHH----HhcCCCCCcEEEecCCCcChHHHHHh------
Q 010952          322 SINLSFTGISDGSLR-----KLAGLSSLKSLNLDARQITDTGLA----ALTSLTGLTHLDLFGARITDSGAAYL------  386 (497)
Q Consensus       322 ~L~l~~~~~~~~~~~-----~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~l------  386 (497)
                      .+.+..|.+...+..     .+..+.+|+.|++.+|.++..+..    ++...+.|++|.+.+|-++..+...+      
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e  268 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE  268 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence            777777666533222     223456777777777766655432    33345667777777776554433322      


Q ss_pred             hccCCCCeeeecCCCC
Q 010952          387 RNFKNLRSLEICGGGL  402 (497)
Q Consensus       387 ~~~~~L~~L~l~~~~l  402 (497)
                      ...|+|..|...+|.+
T Consensus       269 ~~~p~l~~L~~~Yne~  284 (388)
T COG5238         269 KFVPNLMPLPGDYNER  284 (388)
T ss_pred             hcCCCccccccchhhh
Confidence            2346666666665543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.89  E-value=1.8e-08  Score=85.22  Aligned_cols=92  Identities=20%  Similarity=0.296  Sum_probs=45.7

Q ss_pred             HHHhhCCCCCcEEEcCCCCCChhHhHhhh----cCCCCCEEEccCCCCC---hh-------HHHHhhCCCCcCEEeCCCC
Q 010952          215 LDSLSALGSLFYLNLNRCQLSDDGCEKFS----KIGSLKVLNLGFNEIT---DE-------CLVHLKGLTNLESLNLDSC  280 (497)
Q Consensus       215 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~----~l~~L~~L~l~~~~~~---~~-------~~~~l~~~~~L~~L~l~~~  280 (497)
                      .+.+..+..+..+++++|.+......+++    .-.+|+..+++.-...   +.       ....+..||.|+..+++.|
T Consensus        23 ~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN  102 (388)
T COG5238          23 VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN  102 (388)
T ss_pred             HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence            34445567778888888887766665553    3345555554432111   11       1122334556666666555


Q ss_pred             CCCHhHH----HHHhCCCCCCEeeccCccc
Q 010952          281 GIGDEGL----VNLTGLCNLKCLELSDTQV  306 (497)
Q Consensus       281 ~l~~~~~----~~l~~~~~L~~L~l~~~~~  306 (497)
                      .+....+    ..++....|++|.+.+|.+
T Consensus       103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         103 AFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             ccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            4432222    2233444555555555543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.64  E-value=1e-07  Score=95.58  Aligned_cols=149  Identities=21%  Similarity=0.306  Sum_probs=100.2

Q ss_pred             CCCcEEEcCCCCC-CHhHHHHhc-CCCCCcEEEecCCCcC-hHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCe
Q 010952          342 SSLKSLNLDARQI-TDTGLAALT-SLTGLTHLDLFGARIT-DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL  418 (497)
Q Consensus       342 ~~L~~L~l~~~~~-~~~~~~~~~-~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~  418 (497)
                      .+|+.|+++|... ....+..++ -+|+|++|.+.+-.+. +.+.....++|+|..||+++++++..  .+++.+++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            5677777776432 222222333 4788888888775543 33344457788888888888887776  56677888888


Q ss_pred             ecccCCCCCC-hhHHHHhhcCCCCcEEEeeCCccChh--HH----HhhcCCcccceeecccCCCCHHHHHHHhhcCCCCC
Q 010952          419 LNLSQNCNLT-DKTLELISGLTGLVSLNVSNSRITSA--GL----RHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL  491 (497)
Q Consensus       419 L~l~~~~~l~-~~~~~~l~~~~~L~~L~l~~~~l~~~--~~----~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p~L  491 (497)
                      |.+.+- .+. ......+.++++|+.||+|+......  ++    +.-..+|.|+.||.+++.+++..++.+. ..-|+|
T Consensus       200 L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll-~sH~~L  277 (699)
T KOG3665|consen  200 LSMRNL-EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL-NSHPNL  277 (699)
T ss_pred             HhccCC-CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH-HhCccH
Confidence            888776 343 34556677888888888887643221  12    3335688999999999998888888887 566766


Q ss_pred             ccC
Q 010952          492 VSF  494 (497)
Q Consensus       492 ~~l  494 (497)
                      ..+
T Consensus       278 ~~i  280 (699)
T KOG3665|consen  278 QQI  280 (699)
T ss_pred             hhh
Confidence            654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.63  E-value=7.7e-09  Score=69.30  Aligned_cols=60  Identities=35%  Similarity=0.435  Sum_probs=37.2

Q ss_pred             CCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCC
Q 010952          414 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK  474 (497)
Q Consensus       414 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~  474 (497)
                      |+|++|++++| +++...+..+.++++|+.|++++|.++...+..|..+++|++|++++|+
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            35566666666 5555555555666666666666666666555666666666666666665

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.59  E-value=1.2e-09  Score=104.52  Aligned_cols=127  Identities=26%  Similarity=0.297  Sum_probs=94.9

Q ss_pred             CCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeeccc
Q 010952          343 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS  422 (497)
Q Consensus       343 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~  422 (497)
                      .|...++++|.+... ...+.-++.++.|++++|++++.  +.+..+++|++||++.|.+....-.....|. |..|++.
T Consensus       165 ~L~~a~fsyN~L~~m-D~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLM-DESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHHhH-HHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence            455666677766543 24556678899999999998874  4778899999999999988776444444455 8999999


Q ss_pred             CCCCCChhHHHHhhcCCCCcEEEeeCCccChh-HHHhhcCCcccceeecccCCCC
Q 010952          423 QNCNLTDKTLELISGLTGLVSLNVSNSRITSA-GLRHLKPLKNLRSLTLESCKVT  476 (497)
Q Consensus       423 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~~~~~  476 (497)
                      +| .++.  ...+.++.+|+.||+++|-+.+. -..-+..+..|+.|++.||++-
T Consensus       241 nN-~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  241 NN-ALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cc-HHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            99 6665  45577889999999999976653 2244567888999999999873

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.57  E-value=1.8e-08  Score=67.53  Aligned_cols=59  Identities=36%  Similarity=0.478  Sum_probs=32.8

Q ss_pred             CCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCc
Q 010952          391 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR  450 (497)
Q Consensus       391 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~  450 (497)
                      +|++|++++|.+.......+..+++|++|++++| .++...+..+.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4555555555555554445555555555555555 5555445555555556666655554

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.57  E-value=5.6e-08  Score=83.37  Aligned_cols=153  Identities=24%  Similarity=0.282  Sum_probs=90.6

Q ss_pred             CCCCEEeccCCCCCh-HHHHHhcCCCCCcEEEcCCCCCCHhHH--H-HhcCCCCCcEEEecCCCcCh--HHHHHhhccCC
Q 010952          318 TNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGL--A-ALTSLTGLTHLDLFGARITD--SGAAYLRNFKN  391 (497)
Q Consensus       318 ~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~--~-~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~  391 (497)
                      .+|++|.+.+..+.- .....+..+|.+++|.++.|.+.....  . .-..-+.++++++..|...-  .....-+.+|+
T Consensus       121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn  200 (418)
T KOG2982|consen  121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN  200 (418)
T ss_pred             cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence            455555555544331 112233455555666555552211100  0 00123466777777764221  01112245899


Q ss_pred             CCeeeecCCCCChhhH-HhhhhcCCCCeecccCCCCCC-hhHHHHhhcCCCCcEEEeeCCccChhHHHh------hcCCc
Q 010952          392 LRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLT-DKTLELISGLTGLVSLNVSNSRITSAGLRH------LKPLK  463 (497)
Q Consensus       392 L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~l~-~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~------l~~~~  463 (497)
                      +..+.++.|++..... .....+|.+.-|+++.+ ++. ....+.+.+++.|..|.++++++.+..-..      ++.++
T Consensus       201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~  279 (418)
T KOG2982|consen  201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLT  279 (418)
T ss_pred             chheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeecc
Confidence            9999999998876543 34556788889999998 554 446788999999999999999988754321      24567


Q ss_pred             ccceeecc
Q 010952          464 NLRSLTLE  471 (497)
Q Consensus       464 ~L~~L~l~  471 (497)
                      +++.|+=+
T Consensus       280 ~v~vLNGs  287 (418)
T KOG2982|consen  280 KVQVLNGS  287 (418)
T ss_pred             ceEEecCc
Confidence            77766533

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.56  E-value=3.3e-08  Score=84.74  Aligned_cols=183  Identities=18%  Similarity=0.169  Sum_probs=83.7

Q ss_pred             CCCcEEEcCCCCCCh--hHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHH-HhCCCCCCE
Q 010952          222 GSLFYLNLNRCQLSD--DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN-LTGLCNLKC  298 (497)
Q Consensus       222 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~-l~~~~~L~~  298 (497)
                      +.++.+++.+|.+.+  +....+.++|.|++|+++.|++............+|+.+.+.+..+....... +..+|+++.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            445555555554432  11223345555555555555554322111124455566666555444333222 234556666


Q ss_pred             eeccCcccchHHH--Hhh-cCCCCCCEEeccCCCCChH--HHHHhcCCCCCcEEEcCCCCCCHhHH-HHhcCCCCCcEEE
Q 010952          299 LELSDTQVGSSGL--RHL-SGLTNLESINLSFTGISDG--SLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLD  372 (497)
Q Consensus       299 L~l~~~~~~~~~~--~~l-~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~  372 (497)
                      |+++.|.+.....  ... ..-+.++++....|.....  ....-.-+|++..+.++.|.+..... .....+|.+.-|+
T Consensus       151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln  230 (418)
T KOG2982|consen  151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN  230 (418)
T ss_pred             hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence            6666553221100  001 1122444444444422111  11112235666666666665543221 2333455555666


Q ss_pred             ecCCCcCh-HHHHHhhccCCCCeeeecCCCCCh
Q 010952          373 LFGARITD-SGAAYLRNFKNLRSLEICGGGLTD  404 (497)
Q Consensus       373 l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~l~~  404 (497)
                      +..+++.. ...+++..++.|..|.++++++.+
T Consensus       231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             hcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            66666543 223445666667666666666543

>PLN03150 hypothetical protein; Provisional

Probab=98.55  E-value=9e-08  Score=96.27  Aligned_cols=106  Identities=19%  Similarity=0.249  Sum_probs=68.1

Q ss_pred             CcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEee
Q 010952          368 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS  447 (497)
Q Consensus       368 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~  447 (497)
                      ++.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|+|++| .++..+|..++++++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEECc
Confidence            556666666666666666666667777777776666655656666677777777776 6666666666667777777777


Q ss_pred             CCccChhHHHhhcC-CcccceeecccCC
Q 010952          448 NSRITSAGLRHLKP-LKNLRSLTLESCK  474 (497)
Q Consensus       448 ~~~l~~~~~~~l~~-~~~L~~L~l~~~~  474 (497)
                      +|.+++..+..+.. ..++..+++.+|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCc
Confidence            77666655555543 2345566666653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.50  E-value=3.6e-07  Score=91.74  Aligned_cols=154  Identities=25%  Similarity=0.340  Sum_probs=93.3

Q ss_pred             CCCCCEEeccCCCC-ChHHHHHhc-CCCCCcEEEcCCCCCCHhH-HHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCC
Q 010952          317 LTNLESINLSFTGI-SDGSLRKLA-GLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR  393 (497)
Q Consensus       317 ~~~L~~L~l~~~~~-~~~~~~~l~-~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  393 (497)
                      ..+|++|+++|... ....+..++ -+|+|++|.+.+-.+.... .....++|+|..|+++++.++..  ..+..+++|+
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq  198 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ  198 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence            35677777776532 222233333 4677777777776554432 23345677777777777777654  4456677777


Q ss_pred             eeeecCCCCCh-hhHHhhhhcCCCCeecccCCCCCChh--HHHHhh---cCCCCcEEEeeCCccChhHHHhh-cCCcccc
Q 010952          394 SLEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTDK--TLELIS---GLTGLVSLNVSNSRITSAGLRHL-KPLKNLR  466 (497)
Q Consensus       394 ~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~l~---~~~~L~~L~l~~~~l~~~~~~~l-~~~~~L~  466 (497)
                      .|.+.+=.+.. .....+-.+.+|+.||+|......+.  +-..+.   .+|+|+.||.+++.+.+...+.+ ...|+|+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            77777655543 22334455778888888776433322  222222   47888888888888877666554 4566777


Q ss_pred             eeeccc
Q 010952          467 SLTLES  472 (497)
Q Consensus       467 ~L~l~~  472 (497)
                      .+.+-+
T Consensus       279 ~i~~~~  284 (699)
T KOG3665|consen  279 QIAALD  284 (699)
T ss_pred             hhhhhh
Confidence            666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.49  E-value=1.5e-07  Score=90.45  Aligned_cols=195  Identities=35%  Similarity=0.481  Sum_probs=95.7

Q ss_pred             EEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCC-CCCCEeeccCcccchHHHHhhcCCCCCCEEeccCC
Q 010952          250 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL-CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT  328 (497)
Q Consensus       250 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  328 (497)
                      .++...+.+... ...+...+.++.+.+.++.+....+ ..... ++|+.|+++++.+... +..+..++.|+.|++++|
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccccCcc-ccccchhhcccccccccchhhh-hhhhhccccccccccCCc
Confidence            455555554211 1223344566777776665554332 12233 2666666666665443 133455666666666666


Q ss_pred             CCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHH
Q 010952          329 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK  408 (497)
Q Consensus       329 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~  408 (497)
                      .+.+... .....+.|+.|+++++++...... ......|+++.+++|.+... +..+..+.++..+.+.+|++... +.
T Consensus       174 ~l~~l~~-~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~~~-~~  249 (394)
T COG4886         174 DLSDLPK-LLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLEDL-PE  249 (394)
T ss_pred             hhhhhhh-hhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceec-chhhhhcccccccccCCceeeec-cc
Confidence            5554322 122455666666666655553221 12233456666666532211 22334455555555555554432 23


Q ss_pred             hhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChh
Q 010952          409 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA  454 (497)
Q Consensus       409 ~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~  454 (497)
                      .++.+++++.|++++| .+++...  ++...+++.|+++++.+...
T Consensus       250 ~~~~l~~l~~L~~s~n-~i~~i~~--~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         250 SIGNLSNLETLDLSNN-QISSISS--LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             hhccccccceeccccc-ccccccc--ccccCccCEEeccCcccccc
Confidence            3444455555555555 4444222  45555555555555554443

>PLN03150 hypothetical protein; Provisional

Probab=98.44  E-value=2.8e-07  Score=92.83  Aligned_cols=106  Identities=22%  Similarity=0.333  Sum_probs=66.4

Q ss_pred             CcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccC
Q 010952          344 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ  423 (497)
Q Consensus       344 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~  423 (497)
                      ++.|+++++.+....+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            55666666666555555566666666666666666665566666666666666666666666566666666666666666


Q ss_pred             CCCCChhHHHHhhc-CCCCcEEEeeCCc
Q 010952          424 NCNLTDKTLELISG-LTGLVSLNVSNSR  450 (497)
Q Consensus       424 ~~~l~~~~~~~l~~-~~~L~~L~l~~~~  450 (497)
                      | .++...|..+.. ..++..+++.+|+
T Consensus       500 N-~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 N-SLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             C-cccccCChHHhhccccCceEEecCCc
Confidence            6 566555555543 2345566666654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.34  E-value=1.3e-08  Score=94.87  Aligned_cols=174  Identities=19%  Similarity=0.121  Sum_probs=129.6

Q ss_pred             ceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEe
Q 010952           52 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD  131 (497)
Q Consensus        52 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  131 (497)
                      -....+++.|.+. .+|.....|..|+.+.++.| .+. ..+.++..+..|.+|+++.|+.  ...|..+..|+ |+.|-
T Consensus        76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n-~~r-~ip~~i~~L~~lt~l~ls~Nql--S~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHN-CIR-TIPEAICNLEALTFLDLSSNQL--SHLPDGLCDLP-LKVLI  149 (722)
T ss_pred             chhhhhccccccc-cCchHHHHHHHHHHHHHHhc-cce-ecchhhhhhhHHHHhhhccchh--hcCChhhhcCc-ceeEE
Confidence            3455567776654 56666777788888888775 233 3577788888889999998874  45566666665 78888


Q ss_pred             ccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCC
Q 010952          132 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT  211 (497)
Q Consensus       132 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  211 (497)
                      +++ +++...+..++..+.|..|+.+.|...+  .+..++.+.+|+.|.+..|.+... +..+..++ |.+|+++.|++.
T Consensus       150 ~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~s--lpsql~~l~slr~l~vrRn~l~~l-p~El~~Lp-Li~lDfScNkis  224 (722)
T KOG0532|consen  150 VSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQS--LPSQLGYLTSLRDLNVRRNHLEDL-PEELCSLP-LIRLDFSCNKIS  224 (722)
T ss_pred             Eec-CccccCCcccccchhHHHhhhhhhhhhh--chHHhhhHHHHHHHHHhhhhhhhC-CHHHhCCc-eeeeecccCcee
Confidence            887 4677788888888889999988866544  667788888888888888877743 44444444 788999999887


Q ss_pred             hHHHHHhhCCCCCcEEEcCCCCCChh
Q 010952          212 AACLDSLSALGSLFYLNLNRCQLSDD  237 (497)
Q Consensus       212 ~~~~~~l~~l~~L~~L~l~~~~~~~~  237 (497)
                      . +|..|.+|++|++|-|.+|.+..-
T Consensus       225 ~-iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  225 Y-LPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             e-cchhhhhhhhheeeeeccCCCCCC
Confidence            7 678889999999999998887653

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.30  E-value=3.6e-06  Score=83.43  Aligned_cols=60  Identities=33%  Similarity=0.488  Sum_probs=26.0

Q ss_pred             CCCcCEEeCCCCC-CCHhHHHHHhC-CCCCCEeeccCcc-cchHHHHh-hcCCCCCCEEeccCC
Q 010952          269 LTNLESLNLDSCG-IGDEGLVNLTG-LCNLKCLELSDTQ-VGSSGLRH-LSGLTNLESINLSFT  328 (497)
Q Consensus       269 ~~~L~~L~l~~~~-l~~~~~~~l~~-~~~L~~L~l~~~~-~~~~~~~~-l~~~~~L~~L~l~~~  328 (497)
                      +.+|+.+++.++. +++.....++. +++|+.|.+..+. +++..... ...++.|++|++++|
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c  305 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC  305 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence            3445555555443 33333333332 4455555544443 23322222 223455555555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.29  E-value=7.7e-07  Score=85.47  Aligned_cols=196  Identities=25%  Similarity=0.287  Sum_probs=135.2

Q ss_pred             EEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCC-CCCEEEcCCCCCCChHHHHHHhCCCCCCEEecc
Q 010952           55 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE  133 (497)
Q Consensus        55 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  133 (497)
                      .++...+.+. .....+.....++.|.+.++ .+.. .+....... +|++|+++++..  ..++..+..+++|+.|+++
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n-~i~~-i~~~~~~~~~nL~~L~l~~N~i--~~l~~~~~~l~~L~~L~l~  171 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNN-NITD-IPPLIGLLKSNLKELDLSDNKI--ESLPSPLRNLPNLKNLDLS  171 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCc-cccc-Cccccccchhhcccccccccch--hhhhhhhhccccccccccC
Confidence            4666665542 22333455678899999886 4443 233344453 899999999874  3445678889999999999


Q ss_pred             CccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChH
Q 010952          134 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA  213 (497)
Q Consensus       134 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  213 (497)
                      +| .+...+......+.|+.|+++++. +.+ .+..+.....|+++.++.+.+. ..+..+.++..+..+.+.++++.. 
T Consensus       172 ~N-~l~~l~~~~~~~~~L~~L~ls~N~-i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-  246 (394)
T COG4886         172 FN-DLSDLPKLLSNLSNLNNLDLSGNK-ISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-  246 (394)
T ss_pred             Cc-hhhhhhhhhhhhhhhhheeccCCc-ccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-
Confidence            85 355566555578899999998844 332 2233334556888888888533 234556777788888888887654 


Q ss_pred             HHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhH
Q 010952          214 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC  262 (497)
Q Consensus       214 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  262 (497)
                      .+..+..++.++.|++++|.+.....  ++.+.+++.++++++.+....
T Consensus       247 ~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         247 LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             ccchhccccccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence            24567788889999999998876544  778899999999988776433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.26  E-value=6.5e-08  Score=92.93  Aligned_cols=243  Identities=28%  Similarity=0.356  Sum_probs=134.5

Q ss_pred             CCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEe
Q 010952          220 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL  299 (497)
Q Consensus       220 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L  299 (497)
                      .+..++.+.+..+.+.. ....+..+.+++.+++..|.+.... ..+..+++|+.|++++|.+....  .+..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheecccccccccc--chhhccchhhh
Confidence            34455555555555443 1222456677777777777766422 11556777777777777665432  23445557777


Q ss_pred             eccCcccchHHHHhhcCCCCCCEEeccCCCCChHHH-HHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCc
Q 010952          300 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI  378 (497)
Q Consensus       300 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  378 (497)
                      ++.+|.+...  ..+..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+....  .+..+..+..+++..|.+
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKI  220 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccc
Confidence            7777776542  334446677777777776654433 2 355667777777776655422  122223333335555554


Q ss_pred             ChHHHHHhhccC--CCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChh--
Q 010952          379 TDSGAAYLRNFK--NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA--  454 (497)
Q Consensus       379 ~~~~~~~l~~~~--~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~--  454 (497)
                      +...+  +...+  +|+.+.+++|++.... ..+..+..+..+++.++ ++..  ...+...+.+..+....+.+...  
T Consensus       221 ~~~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  294 (414)
T KOG0531|consen  221 SKLEG--LNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSN-RISN--LEGLERLPKLSELWLNDNKLALSEA  294 (414)
T ss_pred             eeccC--cccchhHHHHHHhcccCcccccc-ccccccccccccchhhc-cccc--cccccccchHHHhccCcchhcchhh
Confidence            43211  11122  2677777777766542 34445567777777776 4433  12233445555556666654421  


Q ss_pred             HHHh--hcCCcccceeecccCCCCH
Q 010952          455 GLRH--LKPLKNLRSLTLESCKVTA  477 (497)
Q Consensus       455 ~~~~--l~~~~~L~~L~l~~~~~~~  477 (497)
                      ..+.  ....+.++.+.+..+++..
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  295 ISQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             hhccccccccccccccccccCcccc
Confidence            1111  3556777788887776544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.25  E-value=5.8e-06  Score=81.97  Aligned_cols=110  Identities=30%  Similarity=0.302  Sum_probs=54.2

Q ss_pred             cCCCCCEEEccCCCCChh--HHHHhhCCCCcCEEeCCCC--CCCHh---HHHHHhCCCCCCEeeccCcc-cchHHHHhhc
Q 010952          244 KIGSLKVLNLGFNEITDE--CLVHLKGLTNLESLNLDSC--GIGDE---GLVNLTGLCNLKCLELSDTQ-VGSSGLRHLS  315 (497)
Q Consensus       244 ~l~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~--~l~~~---~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~  315 (497)
                      ..+.|+.+.+..+.....  .......++.|+.|+++++  .....   .......+++|+.++++.+. +++.....++
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            356666666665532221  2233445666777766652  11111   11122334566666666655 4444444443


Q ss_pred             C-CCCCCEEeccCCC-CChHHHHHh-cCCCCCcEEEcCCCC
Q 010952          316 G-LTNLESINLSFTG-ISDGSLRKL-AGLSSLKSLNLDARQ  353 (497)
Q Consensus       316 ~-~~~L~~L~l~~~~-~~~~~~~~l-~~~~~L~~L~l~~~~  353 (497)
                      . +++|+.|.+.+|. +++.+...+ ..++.|++|++++|.
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            2 5666666655554 444444333 245666666666553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.23  E-value=9.5e-08  Score=91.81  Aligned_cols=218  Identities=34%  Similarity=0.371  Sum_probs=138.8

Q ss_pred             cCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEE
Q 010952          244 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI  323 (497)
Q Consensus       244 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  323 (497)
                      .+..++.+.++.+.+.. ....+..+.+++.+++.++.+..... .+..+++|++|++++|.+++.  ..+..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhh
Confidence            44556666666666553 22335667888888888887754322 156678888888888887664  345556668888


Q ss_pred             eccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHH-HHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCC
Q 010952          324 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL  402 (497)
Q Consensus       324 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l  402 (497)
                      ++.+|.+...  ..+..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+....  .+..+..+..+++..|.+
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKI  220 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccc
Confidence            8888877643  223346778888888887776443 2 456778888888888765422  222233344446666665


Q ss_pred             ChhhHHhhhhcC--CCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCC
Q 010952          403 TDAGVKHIKDLS--SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT  476 (497)
Q Consensus       403 ~~~~~~~~~~l~--~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~  476 (497)
                      +....  +..+.  .|+.+++++| .+... +..+..+..+..|++.++.+...  +.+...+.+..++...+.+.
T Consensus       221 ~~~~~--l~~~~~~~L~~l~l~~n-~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  221 SKLEG--LNELVMLHLRELYLSGN-RISRS-PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             eeccC--cccchhHHHHHHhcccC-ccccc-cccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence            54321  11222  3788888888 55542 14566778888888888876652  34556667777777777655

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.11  E-value=9.1e-08  Score=91.96  Aligned_cols=202  Identities=27%  Similarity=0.272  Sum_probs=114.0

Q ss_pred             HHhcCCceeEEEeeCCCCChHH-HHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCC
Q 010952           46 IASQGSSLLSVDLSGSDVTDSG-LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL  124 (497)
Q Consensus        46 ~~~~~~~l~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l  124 (497)
                      +..-.+++++|.+-...-.+.. |-.|.-|.+||+|.+++|+--...+...+.+  .|++|-.+..   .+..-..|+.+
T Consensus        79 i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~--qLe~LIC~~S---l~Al~~v~asc  153 (1096)
T KOG1859|consen   79 ILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRH--QLEKLICHNS---LDALRHVFASC  153 (1096)
T ss_pred             HHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHH--hhhhhhhhcc---HHHHHHHHHHh
Confidence            3344567777777664333333 6667888999999999995323333333322  3455543332   12222222211


Q ss_pred             --------C--CCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhh
Q 010952          125 --------I--NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL  194 (497)
Q Consensus       125 --------~--~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l  194 (497)
                              +  .|...+++- +.+...-.++.-++.|+.|++++|. +.  ....+..+++|++|+|+.|.+....-...
T Consensus       154 ggd~~ns~~Wn~L~~a~fsy-N~L~~mD~SLqll~ale~LnLshNk-~~--~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~  229 (1096)
T KOG1859|consen  154 GGDISNSPVWNKLATASFSY-NRLVLMDESLQLLPALESLNLSHNK-FT--KVDNLRRLPKLKHLDLSYNCLRHVPQLSM  229 (1096)
T ss_pred             ccccccchhhhhHhhhhcch-hhHHhHHHHHHHHHHhhhhccchhh-hh--hhHHHHhcccccccccccchhccccccch
Confidence                    0  344444443 2344444556666777788887743 32  23466777788888887777664433333


Q ss_pred             hcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChh-HhHhhhcCCCCCEEEccCCCCC
Q 010952          195 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD-GCEKFSKIGSLKVLNLGFNEIT  259 (497)
Q Consensus       195 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~  259 (497)
                      .+++ |..|.+.+|.++.  ...+.++.+|+.|++++|-+.+. ....+..+..|..|.+.||.+.
T Consensus       230 ~gc~-L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  230 VGCK-LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhh-heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            4444 7777777776654  34567777777788777654321 1223344566677777776553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.99  E-value=1.8e-07  Score=87.48  Aligned_cols=191  Identities=19%  Similarity=0.209  Sum_probs=119.4

Q ss_pred             CEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCC
Q 010952          273 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR  352 (497)
Q Consensus       273 ~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  352 (497)
                      ...+++.|.+.. .+..++.+..|+.+.++.|.+... +..+.++..|+.++++.|.++.. +..+..+| |+.|.+++|
T Consensus        78 ~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r~i-p~~i~~L~~lt~l~ls~NqlS~l-p~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRFSE-LPEEACAFVSLESLILYHNCIRTI-PEAICNLEALTFLDLSSNQLSHL-PDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhcccccccc-CchHHHHHHHHHHHHHHhccceec-chhhhhhhHHHHhhhccchhhcC-ChhhhcCc-ceeEEEecC
Confidence            345566665543 233344455666677766655433 45566677788888887766532 22333333 777777777


Q ss_pred             CCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHH
Q 010952          353 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL  432 (497)
Q Consensus       353 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  432 (497)
                      +++.. +..++..++|..|+.+.|.+... +..+.++.+|+.|.++.|++... +..+. .-.|..|+++.| +++. +|
T Consensus       154 kl~~l-p~~ig~~~tl~~ld~s~nei~sl-psql~~l~slr~l~vrRn~l~~l-p~El~-~LpLi~lDfScN-kis~-iP  227 (722)
T KOG0532|consen  154 KLTSL-PEEIGLLPTLAHLDVSKNEIQSL-PSQLGYLTSLRDLNVRRNHLEDL-PEELC-SLPLIRLDFSCN-KISY-LP  227 (722)
T ss_pred             ccccC-CcccccchhHHHhhhhhhhhhhc-hHHhhhHHHHHHHHHhhhhhhhC-CHHHh-CCceeeeecccC-ceee-cc
Confidence            77653 34455667788888888876654 45566777788888887777766 33444 345677788777 6665 46


Q ss_pred             HHhhcCCCCcEEEeeCCccChhHHHhh--cCCcccceeecccC
Q 010952          433 ELISGLTGLVSLNVSNSRITSAGLRHL--KPLKNLRSLTLESC  473 (497)
Q Consensus       433 ~~l~~~~~L~~L~l~~~~l~~~~~~~l--~~~~~L~~L~l~~~  473 (497)
                      ..+.++..|++|-|.+|++.....+..  +...--++|+.+-|
T Consensus       228 v~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  228 VDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             hhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence            667778888888888888776443322  23344556666666

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.90  E-value=1.1e-05  Score=65.57  Aligned_cols=104  Identities=18%  Similarity=0.216  Sum_probs=57.1

Q ss_pred             CCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhH-HHHhhcCCCCcEEE
Q 010952          367 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLN  445 (497)
Q Consensus       367 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~l~~~~~L~~L~  445 (497)
                      ....+++++|.+...  ..+..++.|.+|.+.+|+|+.+.+..-..+++|+.|.+.+| .+.+.. ...+..||.|++|.
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence            344455555544331  22344555666666666666554444344566666666666 444332 33455667777777


Q ss_pred             eeCCccChhHH---HhhcCCcccceeecccC
Q 010952          446 VSNSRITSAGL---RHLKPLKNLRSLTLESC  473 (497)
Q Consensus       446 l~~~~l~~~~~---~~l~~~~~L~~L~l~~~  473 (497)
                      +-+|+.+...-   ..+..+|+|+.||+++=
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            77776654322   22356777777777654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.73  E-value=2.8e-05  Score=63.45  Aligned_cols=82  Identities=33%  Similarity=0.498  Sum_probs=44.0

Q ss_pred             CCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhc-CCCCcEEEeeCC-ccChhHHHhhcCCcccceee
Q 010952          392 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVSNS-RITSAGLRHLKPLKNLRSLT  469 (497)
Q Consensus       392 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~-~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~L~  469 (497)
                      ++.++.+++.|..++.+.+..+++++.|.+.+|..+.+...+.+++ .++|+.|+|++| ++++.....+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            3444445555555555555555555555555555455544444442 355555555555 35555555555555566555


Q ss_pred             cccC
Q 010952          470 LESC  473 (497)
Q Consensus       470 l~~~  473 (497)
                      +.+=
T Consensus       183 l~~l  186 (221)
T KOG3864|consen  183 LYDL  186 (221)
T ss_pred             hcCc
Confidence            5554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.73  E-value=6.6e-06  Score=62.49  Aligned_cols=110  Identities=19%  Similarity=0.242  Sum_probs=62.5

Q ss_pred             CCcEEEcCCCCCCHh--HHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeec
Q 010952          343 SLKSLNLDARQITDT--GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN  420 (497)
Q Consensus       343 ~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  420 (497)
                      .+..++++.|++...  ....+.....|+..++++|.+.+..+..-..+|.++.|++.+|.+.+. |..+..++.|+.|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLN  106 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhcc
Confidence            345556666654421  122333445566667777766655444445566677777777777666 33366667777777


Q ss_pred             ccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhH
Q 010952          421 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG  455 (497)
Q Consensus       421 l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~  455 (497)
                      ++.| .+... |+.+..+.++..|+.-+|.+....
T Consensus       107 l~~N-~l~~~-p~vi~~L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  107 LRFN-PLNAE-PRVIAPLIKLDMLDSPENARAEID  139 (177)
T ss_pred             cccC-ccccc-hHHHHHHHhHHHhcCCCCccccCc
Confidence            7776 34332 344444566666666666554433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.63  E-value=6.7e-05  Score=45.75  Aligned_cols=36  Identities=33%  Similarity=0.472  Sum_probs=16.5

Q ss_pred             CCcEEEeeCCccChhHHHhhcCCcccceeecccCCCC
Q 010952          440 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT  476 (497)
Q Consensus       440 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~  476 (497)
                      +|++|++++|++++.. ..+..+++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~l~-~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLP-PELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHG-GHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccC-chHhCCCCCCEEEecCCCCC
Confidence            4455555555555422 23455555555555555544

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.50  E-value=1.7e-05  Score=67.91  Aligned_cols=110  Identities=20%  Similarity=0.321  Sum_probs=80.3

Q ss_pred             CCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhH-HHHhhcCCCCcE
Q 010952          365 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVS  443 (497)
Q Consensus       365 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~l~~~~~L~~  443 (497)
                      +.+.++|++++|.+++.  .....++.|+.|.++-|.|+...  .+..|..|++|+|..| .|.+.. ...+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhh
Confidence            56788899999998874  34578899999999999988753  4567899999999988 666542 567778888999


Q ss_pred             EEeeCCccChhHH-----HhhcCCcccceeecccCCCCHHHHH
Q 010952          444 LNVSNSRITSAGL-----RHLKPLKNLRSLTLESCKVTANDIK  481 (497)
Q Consensus       444 L~l~~~~l~~~~~-----~~l~~~~~L~~L~l~~~~~~~~~~~  481 (497)
                      |.|..|+=.+...     ..+..+|+|+.||  +=.+++..++
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD--nv~VteeEle  133 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD--NVPVTEEELE  133 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc--CccccHHHHH
Confidence            9888887443322     2345678888775  2266666655

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.49  E-value=2.5e-05  Score=59.46  Aligned_cols=83  Identities=22%  Similarity=0.209  Sum_probs=39.1

Q ss_pred             CCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCee
Q 010952          340 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL  419 (497)
Q Consensus       340 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  419 (497)
                      +...|+..++++|.+.+.....-..+|.++.+++.+|.+.+. |..+..++.|+.++++.|.+... ++.+..+.++-.|
T Consensus        51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lNl~~N~l~~~-p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLNLRFNPLNAE-PRVIAPLIKLDML  128 (177)
T ss_pred             CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhcccccCccccc-hHHHHHHHhHHHh
Confidence            334444445555544444333333444555555555555443 22245555555555555555444 3333334444445


Q ss_pred             cccCC
Q 010952          420 NLSQN  424 (497)
Q Consensus       420 ~l~~~  424 (497)
                      +..+|
T Consensus       129 ds~~n  133 (177)
T KOG4579|consen  129 DSPEN  133 (177)
T ss_pred             cCCCC
Confidence            54444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.48  E-value=2.3e-05  Score=67.11  Aligned_cols=102  Identities=22%  Similarity=0.243  Sum_probs=76.2

Q ss_pred             CCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhh-HHhhhhcCCCCe
Q 010952          340 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTL  418 (497)
Q Consensus       340 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~  418 (497)
                      .+.+.+.|++++|.+++  +.....++.|+.|.++-|+|+...  .+..|.+|++|.+..|.|.+.. ...+.++|+|+.
T Consensus        17 dl~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHHhhhhcccCCCccH--HHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            35678889999999988  455678999999999999988753  4578999999999999887652 234567899999


Q ss_pred             ecccCCCCCChhHH----HHhhcCCCCcEEE
Q 010952          419 LNLSQNCNLTDKTL----ELISGLTGLVSLN  445 (497)
Q Consensus       419 L~l~~~~~l~~~~~----~~l~~~~~L~~L~  445 (497)
                      |.|..|+--...+.    ..+.-+|+|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99988853333222    2345678888774

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.42  E-value=0.0002  Score=43.65  Aligned_cols=35  Identities=34%  Similarity=0.504  Sum_probs=13.0

Q ss_pred             CcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCC
Q 010952          368 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT  403 (497)
Q Consensus       368 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~  403 (497)
                      |+.|++++|+++.. +..+..+++|+.|++++|+++
T Consensus         3 L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQITDL-PPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCC
Confidence            44444444444432 112334444444444444433

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.41  E-value=0.00018  Score=58.87  Aligned_cols=81  Identities=22%  Similarity=0.198  Sum_probs=39.4

Q ss_pred             ceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEe
Q 010952           52 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD  131 (497)
Q Consensus        52 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  131 (497)
                      ....++|+++++.  ....|..++.|..|.+.+| .+....+.--..+++|+.|.+.+|.+..-....-+..||.|++|.
T Consensus        43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchh--hcccCCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            3445555555442  2333555566666666555 444433333334455666666665532222223344555555555


Q ss_pred             ccCc
Q 010952          132 LERC  135 (497)
Q Consensus       132 l~~~  135 (497)
                      +-+|
T Consensus       120 ll~N  123 (233)
T KOG1644|consen  120 LLGN  123 (233)
T ss_pred             ecCC
Confidence            5554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.21  E-value=0.00027  Score=57.82  Aligned_cols=82  Identities=33%  Similarity=0.446  Sum_probs=55.5

Q ss_pred             eeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhC-CCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEe
Q 010952           53 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD  131 (497)
Q Consensus        53 l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  131 (497)
                      ++.++=+++.+.......+.+++.++.|.+.+|..+.+...+.+++ .++|+.|++++|+-+++.....+.++++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            4566666666666667777777777777777776666666666653 457777777777666666666677777777776


Q ss_pred             ccC
Q 010952          132 LER  134 (497)
Q Consensus       132 l~~  134 (497)
                      +.+
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.15  E-value=0.0002  Score=56.54  Aligned_cols=8  Identities=13%  Similarity=0.472  Sum_probs=3.0

Q ss_pred             CCCCeecc
Q 010952          414 SSLTLLNL  421 (497)
Q Consensus       414 ~~L~~L~l  421 (497)
                      ++|+.+.+
T Consensus        81 ~~l~~i~~   88 (129)
T PF13306_consen   81 TNLKNIDI   88 (129)
T ss_dssp             TTECEEEE
T ss_pred             cccccccc
Confidence            33333333

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.12  E-value=0.00022  Score=60.85  Aligned_cols=90  Identities=22%  Similarity=0.310  Sum_probs=48.9

Q ss_pred             HhcCCCCCcEEEecCC--CcChHHHHHhhccCCCCeeeecCCCCChhh-HHhhhhcCCCCeecccCCCC--CChhHHHHh
Q 010952          361 ALTSLTGLTHLDLFGA--RITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCN--LTDKTLELI  435 (497)
Q Consensus       361 ~~~~~~~L~~L~l~~~--~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~--l~~~~~~~l  435 (497)
                      .+..+|+|+.|.++.|  .+..........+|+|+++++++|++.... ...+..+.+|..|++.+|..  +.+---..+
T Consensus        60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf  139 (260)
T KOG2739|consen   60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVF  139 (260)
T ss_pred             cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHH
Confidence            3445666677777666  444333333345577777777777665421 23345566677777777732  122222334


Q ss_pred             hcCCCCcEEEeeCCc
Q 010952          436 SGLTGLVSLNVSNSR  450 (497)
Q Consensus       436 ~~~~~L~~L~l~~~~  450 (497)
                      .-+++|++|+-.+..
T Consensus       140 ~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  140 LLLPSLKYLDGCDVD  154 (260)
T ss_pred             HHhhhhccccccccC
Confidence            455666666655443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.07  E-value=0.00028  Score=55.69  Aligned_cols=121  Identities=23%  Similarity=0.336  Sum_probs=45.5

Q ss_pred             hcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCC
Q 010952          314 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR  393 (497)
Q Consensus       314 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  393 (497)
                      +..+++|+.+.+.. .+.......+.++++|+.+.+..+ +...+...+..+++++.+.+.+ .+.......+..+++|+
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            33445555555543 233333334455555666666543 3333334455565666666654 23222333455566666


Q ss_pred             eeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCC
Q 010952          394 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL  441 (497)
Q Consensus       394 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L  441 (497)
                      .+++..+ +.......+..+ .|+.+.+.++  +.......+.++++|
T Consensus        85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL  128 (129)
T ss_dssp             EEEETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred             ccccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence            6666543 444444445554 6666655542  333333444444443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.05  E-value=0.0024  Score=59.64  Aligned_cols=57  Identities=11%  Similarity=0.113  Sum_probs=27.4

Q ss_pred             hhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCC
Q 010952          266 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT  328 (497)
Q Consensus       266 l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  328 (497)
                      +..+.+++.|+++.|.+...+    .-.++|++|.+++|..-...+..+  .++|++|++++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            344566677777766554322    112346666666543222212211  235566666555

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.94  E-value=0.00026  Score=68.30  Aligned_cols=83  Identities=24%  Similarity=0.209  Sum_probs=38.8

Q ss_pred             CCEEeccCCCCCCcccc----ccccCCCCCCEEEeeccccCchhHHhhh----cC-CCCcEEEccCCCCChH----HHHH
Q 010952          151 LESLNIKWCNCITDSDM----KPLSGLTNLKSLQISCSKVTDSGIAYLK----GL-QKLTLLNLEGCPVTAA----CLDS  217 (497)
Q Consensus       151 L~~L~l~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~l~----~l-~~L~~L~l~~~~~~~~----~~~~  217 (497)
                      +.++.+.+|.... ...    ..+..+++|..|+++++.+.+.....+.    .. +.+++|++..|.++..    +...
T Consensus        89 l~~L~L~~~~l~~-~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   89 LLHLSLANNRLGD-RGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             HHHhhhhhCcccc-chHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            5566666644222 222    3334556666666666666654443331    11 3344455555544321    2233


Q ss_pred             hhCCCCCcEEEcCCCCC
Q 010952          218 LSALGSLFYLNLNRCQL  234 (497)
Q Consensus       218 l~~l~~L~~L~l~~~~~  234 (497)
                      +.....++.++++.|.+
T Consensus       168 L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGL  184 (478)
T ss_pred             HhcccchhHHHHHhccc
Confidence            33344555555555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.82  E-value=0.0025  Score=59.50  Aligned_cols=79  Identities=16%  Similarity=0.140  Sum_probs=51.4

Q ss_pred             HHhhcCCCCCCEEeccCCCCChHHHHHhcCC-CCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhcc
Q 010952          311 LRHLSGLTNLESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF  389 (497)
Q Consensus       311 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  389 (497)
                      ...+..+.+++.|++++|.+....     .+ ++|+.|.+.+|.--...+..+  .++|+.|.+++|......      .
T Consensus        45 ~~r~~~~~~l~~L~Is~c~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL------P  111 (426)
T PRK15386         45 TPQIEEARASGRLYIKDCDIESLP-----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL------P  111 (426)
T ss_pred             HHHHHHhcCCCEEEeCCCCCcccC-----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc------c
Confidence            334556799999999999765432     33 469999998854322223333  368999999998422211      3


Q ss_pred             CCCCeeeecCCCC
Q 010952          390 KNLRSLEICGGGL  402 (497)
Q Consensus       390 ~~L~~L~l~~~~l  402 (497)
                      ++|+.|++.++..
T Consensus       112 ~sLe~L~L~~n~~  124 (426)
T PRK15386        112 ESVRSLEIKGSAT  124 (426)
T ss_pred             cccceEEeCCCCC
Confidence            5677888776554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.65  E-value=0.00074  Score=57.79  Aligned_cols=15  Identities=40%  Similarity=0.532  Sum_probs=7.8

Q ss_pred             CCCCCEEEeeccccC
Q 010952          173 LTNLKSLQISCSKVT  187 (497)
Q Consensus       173 l~~L~~L~l~~~~~~  187 (497)
                      +|+|+++++++|++.
T Consensus        90 ~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   90 APNLKVLNLSGNKIK  104 (260)
T ss_pred             CCceeEEeecCCccc
Confidence            355555555555544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.62  E-value=0.00042  Score=66.97  Aligned_cols=182  Identities=30%  Similarity=0.413  Sum_probs=91.6

Q ss_pred             cCEEeCCCCCCCHhHH----HHHhCCCCCCEeeccCcccchHHHHhhc----CC-CCCCEEeccCCCCChHH----HHHh
Q 010952          272 LESLNLDSCGIGDEGL----VNLTGLCNLKCLELSDTQVGSSGLRHLS----GL-TNLESINLSFTGISDGS----LRKL  338 (497)
Q Consensus       272 L~~L~l~~~~l~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~l~----~~-~~L~~L~l~~~~~~~~~----~~~l  338 (497)
                      +..+.+..|.+.....    ..+...+.|+.|++++|.++......+.    .. ..+++|.+..|.++...    ...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            5666666665544333    3344567777788887777654433332    11 34556666666554332    2333


Q ss_pred             cCCCCCcEEEcCCCCCCHhHH----HHhc----CCCCCcEEEecCCCcChHHHH----HhhccCC-CCeeeecCCCCChh
Q 010952          339 AGLSSLKSLNLDARQITDTGL----AALT----SLTGLTHLDLFGARITDSGAA----YLRNFKN-LRSLEICGGGLTDA  405 (497)
Q Consensus       339 ~~~~~L~~L~l~~~~~~~~~~----~~~~----~~~~L~~L~l~~~~~~~~~~~----~l~~~~~-L~~L~l~~~~l~~~  405 (497)
                      .....++.+++..|.+...+.    ..+.    ...++++|++.+|.++.....    .+...+. +..|++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            445666666666665533221    1111    234566666666665533221    2233333 55566666665554


Q ss_pred             hHHhhh----hc-CCCCeecccCCCCCChhHHH----HhhcCCCCcEEEeeCCccChh
Q 010952          406 GVKHIK----DL-SSLTLLNLSQNCNLTDKTLE----LISGLTGLVSLNVSNSRITSA  454 (497)
Q Consensus       406 ~~~~~~----~l-~~L~~L~l~~~~~l~~~~~~----~l~~~~~L~~L~l~~~~l~~~  454 (497)
                      +...+.    .+ +.+++++++.| .+++....    .+..++.++++.+++|++.+.
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence            333221    12 34456666666 44443322    233445556666666655543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=94.71  E-value=0.021  Score=29.42  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=13.1

Q ss_pred             cccceeecccCCCCHHHHHHHh
Q 010952          463 KNLRSLTLESCKVTANDIKRLQ  484 (497)
Q Consensus       463 ~~L~~L~l~~~~~~~~~~~~l~  484 (497)
                      ++|++|++++|.+++.+++.+.
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHhC
Confidence            5666777777777766666653

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=94.26  E-value=0.057  Score=28.43  Aligned_cols=23  Identities=35%  Similarity=0.657  Sum_probs=18.2

Q ss_pred             CcccceeecccC-CCCHHHHHHHh
Q 010952          462 LKNLRSLTLESC-KVTANDIKRLQ  484 (497)
Q Consensus       462 ~~~L~~L~l~~~-~~~~~~~~~l~  484 (497)
                      +++|+.|++++| .+++.++..+.
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            467888888888 68888887775

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=93.44  E-value=0.091  Score=27.62  Aligned_cols=23  Identities=48%  Similarity=0.931  Sum_probs=12.3

Q ss_pred             CCCcCEEEccCccccChhHHHHh
Q 010952           74 CSNLQSLDFNFCIQISDGGLEHL   96 (497)
Q Consensus        74 ~~~L~~L~l~~~~~~~~~~~~~~   96 (497)
                      |++|++|++++|..+++.....+
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHH
Confidence            35556666666555555444443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.21  E-value=0.047  Score=28.04  Aligned_cols=21  Identities=38%  Similarity=0.570  Sum_probs=12.0

Q ss_pred             CCCcEEEeeCCccChhHHHhh
Q 010952          439 TGLVSLNVSNSRITSAGLRHL  459 (497)
Q Consensus       439 ~~L~~L~l~~~~l~~~~~~~l  459 (497)
                      ++|++|+|++|++++.....+
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            566777777777666655544

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.05  E-value=0.059  Score=27.00  Aligned_cols=13  Identities=31%  Similarity=0.455  Sum_probs=8.2

Q ss_pred             CCcEEEeeCCccC
Q 010952          440 GLVSLNVSNSRIT  452 (497)
Q Consensus       440 ~L~~L~l~~~~l~  452 (497)
                      +|++|++++|+++
T Consensus         1 ~L~~Ldls~n~l~   13 (22)
T PF00560_consen    1 NLEYLDLSGNNLT   13 (22)
T ss_dssp             TESEEEETSSEES
T ss_pred             CccEEECCCCcCE
Confidence            3566666666666

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.62  E-value=0.19  Score=23.30  Aligned_cols=13  Identities=46%  Similarity=0.738  Sum_probs=5.0

Q ss_pred             CCcEEEeeCCccC
Q 010952          440 GLVSLNVSNSRIT  452 (497)
Q Consensus       440 ~L~~L~l~~~~l~  452 (497)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4455555555543

...

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=90.62  E-value=0.34  Score=26.00  Aligned_cols=22  Identities=27%  Similarity=0.398  Sum_probs=18.1

Q ss_pred             cccceeecccCCCCHHHHHHHh
Q 010952          463 KNLRSLTLESCKVTANDIKRLQ  484 (497)
Q Consensus       463 ~~L~~L~l~~~~~~~~~~~~l~  484 (497)
                      ++|+.|++++|.+.+.+...+.
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~   23 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALA   23 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHH
Confidence            5788888888888888887775

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=87.38  E-value=1.1  Score=27.64  Aligned_cols=35  Identities=26%  Similarity=0.385  Sum_probs=22.9

Q ss_pred             CCchHHHHHHHHhhhhhhccChhhHHHHhhhhcCCCCCchhHHHHHHh
Q 010952            1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIAS   48 (497)
Q Consensus         1 ~lp~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   48 (497)
                      .||+|++.+||+++      ++.....   +.    .++..|...+..
T Consensus         3 ~LP~Eil~~If~~L------~~~dl~~---~~----~vcr~w~~~~~~   37 (47)
T PF12937_consen    3 SLPDEILLEIFSYL------DPRDLLR---LS----LVCRRWRRIAND   37 (47)
T ss_dssp             CS-HHHHHHHHTTS-------HHHHHH---HT----TSSHHHHHHHTC
T ss_pred             HhHHHHHHHHHhcC------CHHHHHH---HH----HHHHHHHHHHCC
Confidence            48999999999986      3333322   33    778888777643

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=82.12  E-value=1.1  Score=23.34  Aligned_cols=17  Identities=29%  Similarity=0.448  Sum_probs=8.6

Q ss_pred             CCCcEEEeeCCccChhH
Q 010952          439 TGLVSLNVSNSRITSAG  455 (497)
Q Consensus       439 ~~L~~L~l~~~~l~~~~  455 (497)
                      ++|+.|++++|.+....
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00369        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            34555555555554443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=82.12  E-value=1.1  Score=23.34  Aligned_cols=17  Identities=29%  Similarity=0.448  Sum_probs=8.6

Q ss_pred             CCCcEEEeeCCccChhH
Q 010952          439 TGLVSLNVSNSRITSAG  455 (497)
Q Consensus       439 ~~L~~L~l~~~~l~~~~  455 (497)
                      ++|+.|++++|.+....
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00370        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            34555555555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	497
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		4e-11
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		5e-11
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		2e-10
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		2e-10
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		2e-10
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		3e-10
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		3e-10
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		5e-08
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		2e-04
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		2e-04
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		2e-04
4aw4_A	311	Engineered Variant Of Listeria Monocytogenes Inlb I		6e-04
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		8e-04
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		9e-04

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 86/264 (32%), Positives = 129/264 (48%), Gaps = 31/264 (11%)
Query: 87  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 146
           QI+D  +  L  L+NLT L+   NN IT   +     L NL +L+L   T     +  L 
Sbjct: 96  QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 148
Query: 147 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXE 206
           GL  L+ LN  + N +TD  +KPL+ LT L+ L IS +KV+D  +              E
Sbjct: 149 GLTSLQQLN--FGNQVTD--LKPLANLTTLERLDISSNKVSDISV-------LAKLTNLE 197
Query: 207 GCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 263
               T   +  ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L
Sbjct: 198 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--L 253
Query: 264 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 323
             L GLT L  L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  +
Sbjct: 254 APLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYL 309
Query: 324 NLSFTGISDGSLRKLAGLSSLKSL 347
            L F  ISD  +  ++ L+ L+ L
Sbjct: 310 TLYFNNISD--ISPVSSLTKLQRL 331

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 86/264 (32%), Positives = 129/264 (48%), Gaps = 31/264 (11%)
Query: 87  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 146
           QI+D  +  L  L+NLT L+   NN IT   +     L NL +L+L   T     +  L 
Sbjct: 96  QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 148
Query: 147 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXE 206
           GL  L+ LN  + N +TD  +KPL+ LT L+ L IS +KV+D  +              E
Sbjct: 149 GLTSLQQLN--FGNQVTD--LKPLANLTTLERLDISSNKVSDISV-------LAKLTNLE 197
Query: 207 GCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 263
               T   +  ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L
Sbjct: 198 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--L 253
Query: 264 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 323
             L GLT L  L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  +
Sbjct: 254 APLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYL 309
Query: 324 NLSFTGISDGSLRKLAGLSSLKSL 347
            L F  ISD  +  ++ L+ L+ L
Sbjct: 310 TLYFNNISD--ISPVSSLTKLQRL 331

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 128/264 (48%), Gaps = 31/264 (11%)
Query: 87  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 146
           QI+D  +  L  L+NLT L+   NN IT   +     L NL +L+L   T     +  L 
Sbjct: 101 QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 153
Query: 147 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXE 206
           GL  L+ L   + N +TD  +KPL+ LT L+ L IS +KV+D  +              E
Sbjct: 154 GLTSLQQL--SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-------LAKLTNLE 202
Query: 207 GCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 263
               T   +  ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L
Sbjct: 203 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--L 258
Query: 264 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 323
             L GLT L  L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  +
Sbjct: 259 APLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYL 314
Query: 324 NLSFTGISDGSLRKLAGLSSLKSL 347
            L F  ISD  +  ++ L+ L+ L
Sbjct: 315 TLYFNNISD--ISPVSSLTKLQRL 336

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 128/264 (48%), Gaps = 31/264 (11%)
Query: 87  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 146
           QI+D  +  L  L+NLT L+   NN IT   +     L NL +L+L   T     +  L 
Sbjct: 100 QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 152
Query: 147 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXE 206
           GL  L+ L   + N +TD  +KPL+ LT L+ L IS +KV+D  +              E
Sbjct: 153 GLTSLQQL--SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-------LAKLTNLE 201
Query: 207 GCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 263
               T   +  ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L
Sbjct: 202 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--L 257
Query: 264 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 323
             L GLT L  L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  +
Sbjct: 258 APLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYL 313
Query: 324 NLSFTGISDGSLRKLAGLSSLKSL 347
            L F  ISD  +  ++ L+ L+ L
Sbjct: 314 TLYFNNISD--ISPVSSLTKLQRL 335

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 127/271 (46%), Gaps = 45/271 (16%)
Query: 86  IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 143
           I  S+  L  +  L NLT L      NN I    +   A L NL  L     T  +  + 
Sbjct: 68  INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGL-----TLFNNQIT 120
Query: 144 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXX 203
           ++  L  L +LN    +  T SD+  LSGLT+L+ L  S ++VTD               
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD--------------- 165
Query: 204 XXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 263
                      L  L+ L +L  L+++  ++SD      +K+ +L+ L    N+I+D  +
Sbjct: 166 -----------LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--I 210
Query: 264 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 323
             L  LTNL+ L+L+   + D G   L  L NL  L+L++ Q+  S L  LSGLT L  +
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTEL 266
Query: 324 NLSFTGISDGSLRKLAGLSSLKSLNLDARQI 354
            L    IS+  +  LAGL++L +L L+  Q+
Sbjct: 267 KLGANQISN--ISPLAGLTALTNLELNENQL 295

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 127/271 (46%), Gaps = 45/271 (16%)
Query: 86  IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 143
           I  S+  L  +  L NLT L      NN I    +   A L NL  L     T  +  + 
Sbjct: 68  INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGL-----TLFNNQIT 120
Query: 144 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXX 203
           ++  L  L +LN    +  T SD+  LSGLT+L+ L  S ++VTD               
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTD--------------- 165
Query: 204 XXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 263
                      L  L+ L +L  L+++  ++SD      +K+ +L+ L    N+I+D  +
Sbjct: 166 -----------LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--I 210
Query: 264 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 323
             L  LTNL+ L+L+   + D G   L  L NL  L+L++ Q+  S L  LSGLT L  +
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTEL 266
Query: 324 NLSFTGISDGSLRKLAGLSSLKSLNLDARQI 354
            L    IS+  +  LAGL++L +L L+  Q+
Sbjct: 267 KLGANQISN--ISPLAGLTALTNLELNENQL 295

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 127/271 (46%), Gaps = 45/271 (16%)
Query: 86  IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 143
           I  S+  L  +  L NLT L      NN I    +   A L NL  L     T  +  + 
Sbjct: 68  INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGL-----TLFNNQIT 120
Query: 144 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXX 203
           ++  L  L +LN    +  T SD+  LSGLT+L+ L  S ++VTD               
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTD--------------- 165
Query: 204 XXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 263
                      L  L+ L +L  L+++  ++SD      +K+ +L+ L    N+I+D  +
Sbjct: 166 -----------LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--I 210
Query: 264 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 323
             L  LTNL+ L+L+   + D G   L  L NL  L+L++ Q+  S L  LSGLT L  +
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTEL 266
Query: 324 NLSFTGISDGSLRKLAGLSSLKSLNLDARQI 354
            L    IS+  +  LAGL++L +L L+  Q+
Sbjct: 267 KLGANQISN--ISPLAGLTALTNLELNENQL 295

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 136/303 (44%), Gaps = 47/303 (15%)
Query: 75  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDL 132
           +NL+ L+ N   QI+D     +  LSNL  L+  +   N IT   + A   L NL +L L
Sbjct: 66  TNLEYLNLNGN-QITD-----ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYL 117
Query: 133 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGI 191
                    +  L  L K  SLN+   + +  SD+ PLS  T L  L ++ SKV D + I
Sbjct: 118 NEDNI--SDISPLANLTKXYSLNLGANHNL--SDLSPLSNXTGLNYLTVTESKVKDVTPI 173
Query: 192 AYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKV 250
           A             +   ++      L++L SL Y      Q++D       +++ SLK+
Sbjct: 174 ANLTDLYSLSLNYNQIEDISP-----LASLTSLHYFTAYVNQITDITPVANXTRLNSLKI 228
Query: 251 -------------------LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 291
                              L +G N+I+D   V  K LT L+ LN+ S  I D  ++N  
Sbjct: 229 GNNKITDLSPLANLSQLTWLEIGTNQISDINAV--KDLTKLKXLNVGSNQISDISVLN-- 284
Query: 292 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 351
            L  L  L L++ Q+G+     + GLTNL ++ LS   I+D  +R LA LS   S +  A
Sbjct: 285 NLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITD--IRPLASLSKXDSADF-A 341
Query: 352 RQI 354
            Q+
Sbjct: 342 NQV 344

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 111/290 (38%), Gaps = 67/290 (23%)
Query: 107 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 166
           F   N I      +  GL N+  L+L+R        ++L  L K++  + +W  C+   +
Sbjct: 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 335
Query: 167 MK----P------LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLD 216
           M+    P       +GL NLK L +S S  +   +                   T     
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-------------------TNETFV 376
Query: 217 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTN---- 271
           SL A   L  LNL + ++S    + FS +G L+VL+LG NEI  E      +GL N    
Sbjct: 377 SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435
Query: 272 --------------------LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSS 309
                               L+ L L    +   D        L NL  L+LS+  + + 
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495
Query: 310 GLRHLSGLTNLESINLSFTGISD--------GSLRKLAGLSSLKSLNLDA 351
               L GL  LE ++L    ++         G +  L GLS L  LNL++
Sbjct: 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 111/290 (38%), Gaps = 67/290 (23%)
Query: 107 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 166
           F   N I      +  GL N+  L+L+R        ++L  L K++  + +W  C+   +
Sbjct: 283 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 340
Query: 167 MK----P------LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLD 216
           M+    P       +GL NLK L +S S  +   +                   T     
Sbjct: 341 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-------------------TNETFV 381
Query: 217 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTN---- 271
           SL A   L  LNL + ++S    + FS +G L+VL+LG NEI  E      +GL N    
Sbjct: 382 SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 440
Query: 272 --------------------LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSS 309
                               L+ L L    +   D        L NL  L+LS+  + + 
Sbjct: 441 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 500
Query: 310 GLRHLSGLTNLESINLSFTGISD--------GSLRKLAGLSSLKSLNLDA 351
               L GL  LE ++L    ++         G +  L GLS L  LNL++
Sbjct: 501 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 550

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 111/290 (38%), Gaps = 67/290 (23%)
Query: 107 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 166
           F   N I      +  GL N+  L+L+R        ++L  L K++  + +W  C+   +
Sbjct: 288 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 345
Query: 167 MK----P------LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLD 216
           M+    P       +GL NLK L +S S  +   +                   T     
Sbjct: 346 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-------------------TNETFV 386
Query: 217 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTN---- 271
           SL A   L  LNL + ++S    + FS +G L+VL+LG NEI  E      +GL N    
Sbjct: 387 SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 445
Query: 272 --------------------LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSS 309
                               L+ L L    +   D        L NL  L+LS+  + + 
Sbjct: 446 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 505
Query: 310 GLRHLSGLTNLESINLSFTGISD--------GSLRKLAGLSSLKSLNLDA 351
               L GL  LE ++L    ++         G +  L GLS L  LNL++
Sbjct: 506 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 555

>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb Internalin Domain With An Additional Leucine Rich Repeat Inserted Length = 311

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 93/194 (47%), Gaps = 19/194 (9%)
Query: 164 DSDMKPLSG---LTNLKSLQISCSKVTD-SGIAYXXXXXXXXXXXXEGCPVTAACLDSLS 219
           +SD+K + G   L NL SL +S +++TD S I Y            +   +    L +L 
Sbjct: 53  NSDIKSVQGIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLFLNGNKLTDIKP--LANLK 110
Query: 220 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 279
            LG LF L+ N+ +      +           N G ++I    LVHL     LESL L +
Sbjct: 111 NLGWLF-LDENKVKDLSSLKDLKKLKSLSLEHN-GISDIN--GLVHLP---QLESLYLGN 163
Query: 280 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 339
             I D  +  L+ L  L  L L D Q+  S +  L+GLT L+++ LS   ISD  LR LA
Sbjct: 164 NKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHISD--LRALA 217
Query: 340 GLSSLKSLNLDARQ 353
           GL +L  L L +++
Sbjct: 218 GLKNLDVLELFSQE 231

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 120/323 (37%), Gaps = 69/323 (21%)
Query: 74  CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 133
            +NL  LD ++   + D G      L +L  LS   NN I     ++F GL NL  L L+
Sbjct: 247 WTNLTQLDLSYN-NLHDVGNGSFSYLPSLRYLSLEYNN-IQRLSPRSFYGLSNLRYLSLK 304
Query: 134 RCTRIHGGLVNLKGLMKLESLNIKWC----------NCITDSDMKPLSGLTNLKSLQISC 183
           R        V+L     ++  + +W           N I  +     +GL +LK L +S 
Sbjct: 305 RAFTKQS--VSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSK 362
Query: 184 SKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 243
           +  +   +                   T     SL A   L  LNL +  +S      FS
Sbjct: 363 TFTSLQTL-------------------TNETFVSL-AHSPLLTLNLTKNHISKIANGTFS 402
Query: 244 KIGSLKVLNLGFNEITDECL-VHLKGLTNL--------ESLNLDSCGIG----------- 283
            +G L++L+LG NEI  +      +GL N+        + L L +               
Sbjct: 403 WLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLR 462
Query: 284 -------DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD---- 332
                  D        L NL  L+LS+  + +     L GL NLE ++     ++     
Sbjct: 463 RVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKR 522
Query: 333 ----GSLRKLAGLSSLKSLNLDA 351
               G +  L GLS L  LNL++
Sbjct: 523 ANPGGPVNFLKGLSHLHILNLES 545

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 106/265 (40%), Gaps = 44/265 (16%)
Query: 99  LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 158
           L NL +L  R +N +    +  F GL NL KLD+         +V L   M  +  N+K 
Sbjct: 79  LFNLRTLGLR-SNRLKLIPLGVFTGLSNLTKLDISE-----NKIVILLDYMFQDLYNLKS 132
Query: 159 CNCITDSDM-----KPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAA 213
              + D+D+     +  SGL +L+ L +                        E C +T+ 
Sbjct: 133 LE-VGDNDLVYISHRAFSGLNSLEQLTL------------------------EKCNLTSI 167
Query: 214 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG----FNEITDECLVHLKGL 269
             ++LS L  L  L L    ++      F ++  LKVL +      + +T  CL  L   
Sbjct: 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL--- 224
Query: 270 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 329
            NL SL++  C +     + +  L  L+ L LS   + +     L  L  L+ I L    
Sbjct: 225 -NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283
Query: 330 ISDGSLRKLAGLSSLKSLNLDARQI 354
           ++        GL+ L+ LN+   Q+
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQL 308

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	497
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-52
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-32
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-51
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-35
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-30
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-27
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-47
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-42
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-40
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-38
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-37
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-36
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-36
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-33
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-27
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-32
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-30
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-11
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-27
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-26
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-26
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-26
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-27
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-24
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-16
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-27
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-25
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-23
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-26
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-24
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-24
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-22
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-12
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-24
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-22
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-16
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	9e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-22
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-21
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-21
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-21
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-10
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-19
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	7e-16
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	9e-15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-13
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	8e-13
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	8e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-13
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-15
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-11
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-11
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	4e-09
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	6e-08
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	7e-08
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	5e-07
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	6e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-04

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score =  185 bits (472), Expect = 3e-52
 Identities = 103/504 (20%), Positives = 182/504 (36%), Gaps = 82/504 (16%)

Query: 24  SLEAFRDCALQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDF 82
               F      + G    W++ ++S  + L  + L    VTD  L  + K   N + L  
Sbjct: 78  HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL 137

Query: 83  NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 142
           + C   S  GL  +                         A   NL +LDL          
Sbjct: 138 SSCEGFSTDGLAAI------------------------AATCRNLKELDLRESDVDDVSG 173

Query: 143 VNL----KGLMKLESLNIKWCNC-ITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKG 196
             L         L SLNI      ++ S ++ L +   NLKSL+++ +   +     L+ 
Sbjct: 174 HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR 233

Query: 197 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 256
             +L  L   G        +    + S   + L+ C+              L+ L+ GF 
Sbjct: 234 APQLEELGTGGY-----TAEVRPDVYSGLSVALSGCK-------------ELRCLS-GFW 274

Query: 257 EITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHL 314
           +     L  +    + L +LNL    +    LV L   C  L+ L + D  +  +GL  L
Sbjct: 275 DAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD-YIEDAGLEVL 333

Query: 315 -SGLTNLESINLS---------FTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAAL- 362
            S   +L  + +             +++  L  ++ G   L+S+    RQ+T+  L  + 
Sbjct: 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA 393

Query: 363 TSLTGLTHLDLFG----------ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI- 410
            +   +T   L                D G   +  + K+LR L +  G LTD   ++I 
Sbjct: 394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS-GLLTDKVFEYIG 452

Query: 411 KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSRITSAGLR-HLKPLKNLRSL 468
                + +L+++     +D  +  ++SG   L  L + +       L  +   L+ +RSL
Sbjct: 453 TYAKKMEMLSVA-FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL 511

Query: 469 TLESCKVTANDIKRLQSRDLPNLV 492
            + SC V+    K L  + +P L 
Sbjct: 512 WMSSCSVSFGACKLLGQK-MPKLN 534

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score =  128 bits (323), Expect = 5e-32
 Identities = 74/450 (16%), Positives = 139/450 (30%), Gaps = 59/450 (13%)

Query: 99  LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI---------------HGGLV 143
           +           N               +  ++L+                         
Sbjct: 40  IERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEA 99

Query: 144 NLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 200
                  LE + +K    +TD  ++ ++    N K L +S C   +  G+A +    + L
Sbjct: 100 MSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158

Query: 201 TLLNLEGCPVTAACLDSLSALG----SLFYLNLNRC--QLSDDGCEKFSK-IGSLKVLNL 253
             L+L    V       LS       SL  LN++    ++S    E+      +LK L L
Sbjct: 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218

Query: 254 GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD----TQVGS 308
                 ++    L+    LE L            + +   +    C EL           
Sbjct: 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP 278

Query: 309 SGLRHL-SGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTS-L 365
           + L  + S  + L ++NLS+  +    L KL      L+ L +    I D GL  L S  
Sbjct: 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV-LDYIEDAGLEVLASTC 337

Query: 366 TGLTHLDLFG---------ARITDSG-AAYLRNFKNLRSLEICGGGLTDAGVKHI-KDLS 414
             L  L +F            +T+ G  +       L S+      +T+A +  I ++  
Sbjct: 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRP 397

Query: 415 SLTLLNLS---------QNCNLTDKTLE-LISGLTGLVSLNVSNSRITSAGLRHL-KPLK 463
           ++T   L                D     ++     L  L++S   +T     ++    K
Sbjct: 398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAK 456

Query: 464 NLRSLTLESCKVTANDIKRLQSRDLPNLVS 493
            +  L++     +   +  +      +L  
Sbjct: 457 KMEMLSVAFAGDSDLGMHHV-LSGCDSLRK 485

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 71.1 bits (174), Expect = 3e-13
 Identities = 31/221 (14%), Positives = 75/221 (33%), Gaps = 19/221 (8%)

Query: 18  RCLTEVSLEAFRDCALQY-PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCS 75
           + L E+ +       ++    + ++ +  ++     L SV      +T++ LI + ++  
Sbjct: 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRP 397

Query: 76  NLQSLD---------FNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GL 124
           N+                 ++  D G   +     +L  LS      +T +  +      
Sbjct: 398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS--GLLTDKVFEYIGTYA 455

Query: 125 INLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 183
             +  L +        G+ ++  G   L  L I+ C     + +   S L  ++SL +S 
Sbjct: 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

Query: 184 SKVTDSGIAYLK---GLQKLTLLNLEGCPVTAACLDSLSAL 221
             V+      L        + +++  G P +      +  +
Sbjct: 516 CSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERV 556

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  182 bits (464), Expect = 3e-51
 Identities = 94/514 (18%), Positives = 167/514 (32%), Gaps = 79/514 (15%)

Query: 10  IFNELVYSRC--LTEVSLEAFRDCALQ------YPGVNDKWMDVIASQGSSLLSVDLSGS 61
              + +  R   L  + L+     A+       + G    W+  I++    L SV     
Sbjct: 63  ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM 122

Query: 62  DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 119
            V+D  L  L      +L++L  + C   +  GL  +                       
Sbjct: 123 IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSI----------------------- 159

Query: 120 AFAGLINLVKLDLERCTRIHGGLVNL----KGLMKLESLNIKWCNC--ITDSDMKPL-SG 172
                  +  L +E  +        L    +    LE LN        I+  D++ +   
Sbjct: 160 -VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218

Query: 173 LTNLKSLQIS-CSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 230
             +L S+++     +   G       L++    +L           +L     L  L L+
Sbjct: 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS 278

Query: 231 RCQLSDDGCEKFSKIG-SLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDEGLV 288
                 +           ++ L+L +    T++    ++   NLE L   +  IGD GL 
Sbjct: 279 YM--GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLE 335

Query: 289 NLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-GLSSLKS 346
            L   C  LK L              +    + + +      +S   L  LA G   L+ 
Sbjct: 336 VLAQYCKQLKRL-------------RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382

Query: 347 LNLDARQITDTGLAAL-TSLTGLTHLDLFG----ARITDSG-----AAYLRNFKNLRSLE 396
           + +    IT+  L ++ T L  L    L       RITD        + L   K LR   
Sbjct: 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442

Query: 397 I--CGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRIT 452
                GGLTD G+ +I +   ++  + L      +D+ L E   G   L  L +     +
Sbjct: 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLG-YVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501

Query: 453 SAGLRHL-KPLKNLRSLTLESCKVTANDIKRLQS 485
              +      L +LR L ++  + +      +Q 
Sbjct: 502 ERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQM 535

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  138 bits (350), Expect = 1e-35
 Identities = 71/416 (17%), Positives = 142/416 (34%), Gaps = 44/416 (10%)

Query: 36  PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL----KDCSNLQSLDFNF--CIQIS 89
            G     +  I +    + ++ +  S  ++     L    +  ++L+ L+F      +IS
Sbjct: 149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKIS 208

Query: 90  DGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 148
              LE + R   +L S+       +   G   F    NL +          G       L
Sbjct: 209 PKDLETIARNCRSLVSVKVGDFEILELVGF--FKAAANLEEFCGGSLNEDIGMPEKYMNL 266

Query: 149 MKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLE 206
           +    L     + +  ++M  L      ++ L +      T+     ++    L +L   
Sbjct: 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326

Query: 207 GCPVTAACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIG------------SLKVLNL 253
              +    L+ L+     L  L + R        ++   +              L+ + +
Sbjct: 327 NV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV 385

Query: 254 GFNEITDECLVHL----KGLTNLESLNLDSC-GIGDEGLVN-----LTGLCNLKCLELSD 303
             ++IT+E L  +    K L +   + LD    I D  L N     L G   L+      
Sbjct: 386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445

Query: 304 --TQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGL 359
               +   GL ++     N+  + L + G SD  L + + G  +L+ L +     ++  +
Sbjct: 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI 505

Query: 360 AAL-TSLTGLTHLDLFGARITDSGAAYL---RNFKNLRSLEICG-GGLTDAGVKHI 410
           AA  T L  L +L + G R + +G   +   R + N+  +       +   G    
Sbjct: 506 AAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIRE 561

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  123 bits (309), Expect = 3e-30
 Identities = 81/455 (17%), Positives = 152/455 (33%), Gaps = 61/455 (13%)

Query: 95  HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI---------------H 139
               + + T          TA   +      NL  L L+   R                 
Sbjct: 43  RWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTP 102

Query: 140 GGLVNLKGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQIS-CSKVTDSGIAYL-K 195
                   L +L+S++ +    ++D D+  L  +   +L++L++  CS  T  G+  +  
Sbjct: 103 WVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVT 161

Query: 196 GLQKLTLLNLEGCPVTAACLDSLSALG----SLFYLNLNRC---QLSDDGCEKFSKIG-S 247
             +K+  L +E    +      L  L     SL  LN       ++S    E  ++   S
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221

Query: 248 LKVLNL-GFNEITDECLVH-LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 305
           L  + +  F  +           L      +L+      E  +NL     L  L LS   
Sbjct: 222 LVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY-- 279

Query: 306 VGSSGLRHL-SGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 363
           +G + +  L      +  ++L +    ++     +    +L+ L      I D GL  L 
Sbjct: 280 MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLA 338

Query: 364 SL-TGLTHLDLFG-----------ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI 410
                L  L +               ++  G   L +  + L  + +    +T+  ++ I
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398

Query: 411 ----KDLSSLTLLNLSQNCNLTDKTLE-----LISGLTGLVSLNVSN--SRITSAGLRHL 459
               K+L    L+ L +   +TD  L+     L+ G   L           +T  GL ++
Sbjct: 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458

Query: 460 -KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 493
            +   N+R + L     +   +    SR  PNL  
Sbjct: 459 GQYSPNVRWMLLGYVGESDEGLMEF-SRGCPNLQK 492

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  115 bits (288), Expect = 2e-27
 Identities = 48/325 (14%), Positives = 101/325 (31%), Gaps = 31/325 (9%)

Query: 46  IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTS 104
                ++L        +          +    + L       +    +  L    + +  
Sbjct: 238 FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297

Query: 105 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC----- 159
           L        T           NL  L+        G  V  +   +L+ L I+       
Sbjct: 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQG 357

Query: 160 -----NCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL----KGLQKLTLLNLEGCP 209
                  ++   +  L+ G   L+ + +  S +T+  +  +    K L    L+ L+   
Sbjct: 358 MEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE 417

Query: 210 -VTAACLDS-----LSALGSLFYLNLNRC--QLSDDGCEKFSKIG-SLKVLNLGFNEITD 260
            +T   LD+     L     L           L+D G     +   +++ + LG+   +D
Sbjct: 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD 477

Query: 261 ECLVHL-KGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRHLS--- 315
           E L+   +G  NL+ L +  C   +  +    T L +L+ L +   +   +G   +    
Sbjct: 478 EGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMAR 537

Query: 316 GLTNLESINLSF-TGISDGSLRKLA 339
              N+E I       ++     +  
Sbjct: 538 PYWNIELIPSRRVPEVNQQGEIREM 562

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  108 bits (271), Expect = 3e-25
 Identities = 65/378 (17%), Positives = 130/378 (34%), Gaps = 53/378 (14%)

Query: 146 KGLMKLESLNIKW---CNCITDSDMKPLSGLTNLKSLQIS--------------CSKVTD 188
           +   K++S   +      C T +  +      NL+SL++                     
Sbjct: 42  RRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVT 101

Query: 189 SGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRC-QLSDDGCEKFSK 244
             +  +   L++L  ++     V+   LD L+      L  L L++C   + DG      
Sbjct: 102 PWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVT 161

Query: 245 I-GSLKVLNLGFNEITDECLVHL----KGLTNLESLNLDSCG---IGDEGLVNLTGLC-N 295
               +K L +  +  +++    L    +  T+LE LN        I  + L  +   C +
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221

Query: 296 LKCLELSDTQVGS--SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 353
           L  +++ D ++       +  + L      +L+           L     L  L L    
Sbjct: 222 LVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL--SY 279

Query: 354 ITDTGLAALTSL-TGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI- 410
           +    +  L      +  LDL  A   T+     ++   NL  LE     + D G++ + 
Sbjct: 280 MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLA 338

Query: 411 KDLSSLTLLNLSQNCN----------LTDKTLELIS-GLTGLVSLNVSNSRITSAGLRHL 459
           +    L  L + +  +          ++ + L  ++ G   L  + V  S IT+  L  +
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398

Query: 460 ----KPLKNLRSLTLESC 473
               K L + R + L+  
Sbjct: 399 GTYLKNLCDFRLVLLDRE 416

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  168 bits (428), Expect = 5e-47
 Identities = 109/426 (25%), Positives = 188/426 (44%), Gaps = 37/426 (8%)

Query: 68  LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 127
           +      +            ++D        L  +T+L   R   I    +     L NL
Sbjct: 17  IFTDTALAEKMKTVLGKT-NVTD--TVSQTDLDQVTTLQADRLG-IK--SIDGVEYLNNL 70

Query: 128 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 187
            +++     ++   +  LK L KL  + +   N I   D+ PL+ LTNL  L +  +++T
Sbjct: 71  TQINF-SNNQLT-DITPLKNLTKLVDILMNN-NQIA--DITPLANLTNLTGLTLFNNQIT 125

Query: 188 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 247
           D  I  LK L  L  L L    ++   + +LS L SL  L+              + + +
Sbjct: 126 D--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKP---LANLTT 178

Query: 248 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 307
           L+ L++  N+++D  +  L  LTNLESL   +  I    +  L  L NL  L L+  Q+ 
Sbjct: 179 LERLDISSNKVSD--ISVLAKLTNLESLIATNNQI--SDITPLGILTNLDELSLNGNQL- 233

Query: 308 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 367
              +  L+ LTNL  ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT 
Sbjct: 234 -KDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTA 288

Query: 368 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 427
           LT+L+L   ++ D   + + N KNL  L +    ++D  +  +  L+ L  L    N  +
Sbjct: 289 LTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNN-KV 343

Query: 428 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 487
           +D  +  ++ LT +  L+  +++I+   L  L  L  +  L L     T   +    +  
Sbjct: 344 SD--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANVS 399

Query: 488 LPNLVS 493
           +PN V 
Sbjct: 400 IPNTVK 405

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  154 bits (391), Expect = 7e-42
 Identities = 109/403 (27%), Positives = 185/403 (45%), Gaps = 35/403 (8%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 68  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLFNN 122

Query: 111 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 170
             IT   +     L NL +L+L     I   +  L GL  L+ L+    N +TD   KPL
Sbjct: 123 Q-IT--DIDPLKNLTNLNRLELSSN-TISD-ISALSGLTSLQQLSFG--NQVTDL--KPL 173

Query: 171 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 230
           + LT L+ L IS +KV+D  I+ L  L  L  L      ++   +  L  L +L  L+LN
Sbjct: 174 ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 229

Query: 231 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 290
             QL D      + + +L  L+L  N+I++  L  L GLT L  L L +  I    +  L
Sbjct: 230 GNQLKDI--GTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQI--SNISPL 283

Query: 291 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 350
            GL  L  LEL++ Q+    +  +S L NL  + L F  ISD  +  ++ L+ L+ L   
Sbjct: 284 AGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFY 339

Query: 351 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 410
             +++D  +++L +LT +  L     +I+D     L N   +  L +     T+     +
Sbjct: 340 NNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN---APV 392

Query: 411 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 453
              +++++ N  +N          IS        +++ +  + 
Sbjct: 393 NYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSY 435

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  151 bits (383), Expect = 1e-41
 Identities = 82/372 (22%), Positives = 157/372 (42%), Gaps = 30/372 (8%)

Query: 53  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 112
             ++    + +    +    D +            ++D  +     L ++T L       
Sbjct: 2   AATLATLPAPINQ--IFPDADLAEGIRAVLQKA-SVTD--VVTQEELESITKLVVAGEK- 55

Query: 113 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 172
           +    ++    L NL  L+L    +I   +  L  L+KL +L I   N ITD  +  L  
Sbjct: 56  VA--SIQGIEYLTNLEYLNLNGN-QITD-ISPLSNLVKLTNLYIGT-NKITD--ISALQN 108

Query: 173 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 232
           LTNL+ L ++   ++D  I+ L  L K+  LNL      +  L  LS +  L YL +   
Sbjct: 109 LTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTES 165

Query: 233 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 292
           ++ D      + +  L  L+L +N+I D  +  L  LT+L         I    +  +  
Sbjct: 166 KVKD--VTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQI--TDITPVAN 219

Query: 293 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 352
           +  L  L++ + ++  + L  L+ L+ L  + +    ISD  +  +  L+ LK LN+ + 
Sbjct: 220 MTRLNSLKIGNNKI--TDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSN 275

Query: 353 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 412
           QI+D  ++ L +L+ L  L L   ++ +     +    NL +L +    +TD  ++ +  
Sbjct: 276 QISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLAS 331

Query: 413 LSSLTLLNLSQN 424
           LS +   + +  
Sbjct: 332 LSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  150 bits (381), Expect = 2e-41
 Identities = 97/376 (25%), Positives = 171/376 (45%), Gaps = 31/376 (8%)

Query: 77  LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 136
             +L       I+   +     L+       ++ + +T   +     L ++ KL +    
Sbjct: 2   AATLATLPA-PINQ--IFPDADLAEGIRAVLQKAS-VT--DVVTQEELESITKLVV-AGE 54

Query: 137 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 196
           ++   +  ++ L  LE LN+   N ITD  + PLS L  L +L I  +K+TD  I+ L+ 
Sbjct: 55  KVAS-IQGIEYLTNLEYLNLNG-NQITD--ISPLSNLVKLTNLYIGTNKITD--ISALQN 108

Query: 197 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 256
           L  L  L L    ++   +  L+ L  ++ LNL       D     S +  L  L +  +
Sbjct: 109 LTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTES 165

Query: 257 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 316
           ++ D  +  +  LT+L SL+L+   I  E +  L  L +L        Q+  + +  ++ 
Sbjct: 166 KVKD--VTPIANLTDLYSLSLNYNQI--EDISPLASLTSLHYFTAYVNQI--TDITPVAN 219

Query: 317 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 376
           +T L S+ +    I+D  L  LA LS L  L +   QI+D  + A+  LT L  L++   
Sbjct: 220 MTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSN 275

Query: 377 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 436
           +I+D     L N   L SL +    L +  ++ I  L++LT L LSQN ++TD  +  ++
Sbjct: 276 QISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITD--IRPLA 330

Query: 437 GLTGLVSLNVSNSRIT 452
            L+ + S + +N  I 
Sbjct: 331 SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  148 bits (377), Expect = 1e-40
 Identities = 85/335 (25%), Positives = 159/335 (47%), Gaps = 25/335 (7%)

Query: 142 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 201
           +     L +     ++  +    +D+     L ++  L ++  KV    I  ++ L  L 
Sbjct: 15  IFPDADLAEGIRAVLQKAS---VTDVVTQEELESITKLVVAGEKVAS--IQGIEYLTNLE 69

Query: 202 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 261
            LNL G  +T   +  LS L  L  L +   +++D        + +L+ L L  + I+D 
Sbjct: 70  YLNLNGNQITD--ISPLSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISD- 124

Query: 262 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 321
            +  L  LT + SLNL +       L  L+ +  L  L +++++V    +  ++ LT+L 
Sbjct: 125 -ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKV--KDVTPIANLTDLY 180

Query: 322 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 381
           S++L++  I D  +  LA L+SL        QITD  +  + ++T L  L +   +ITD 
Sbjct: 181 SLSLNYNQIED--ISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDL 236

Query: 382 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 441
               L N   L  LEI    ++D  +  +KDL+ L +LN+  N  ++D  + +++ L+ L
Sbjct: 237 SP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSN-QISD--ISVLNNLSQL 289

Query: 442 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 476
            SL ++N+++ +  +  +  L NL +L L    +T
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  141 bits (357), Expect = 5e-38
 Identities = 91/329 (27%), Positives = 150/329 (45%), Gaps = 26/329 (7%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110
            S+  + ++G  V    +  ++  +NL+ L+ N   QI+D  +  L  L  LT+L     
Sbjct: 44  ESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGN-QITD--ISPLSNLVKLTNLYIG-T 97

Query: 111 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 170
           N IT   + A   L NL +L L     I   +  L  L K+ SLN+   + +  SD+ PL
Sbjct: 98  NKIT--DISALQNLTNLRELYLNED-NISD-ISPLANLTKMYSLNLGANHNL--SDLSPL 151

Query: 171 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 230
           S +T L  L ++ SKV D  +  +  L  L  L+L    +    +  L++L SL Y    
Sbjct: 152 SNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAY 207

Query: 231 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 290
             Q++D      + +  L  L +G N+ITD  L  L  L+ L  L + +  I    +  +
Sbjct: 208 VNQITDI--TPVANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQI--SDINAV 261

Query: 291 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 350
             L  LK L +   Q+  S +  L+ L+ L S+ L+   + +  +  + GL++L +L L 
Sbjct: 262 KDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

Query: 351 ARQITDTGLAALTSLTGLTHLDLFGARIT 379
              ITD  +  L SL+ +   D     I 
Sbjct: 320 QNHITD--IRPLASLSKMDSADFANQVIK 346

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  142 bits (361), Expect = 1e-37
 Identities = 89/479 (18%), Positives = 172/479 (35%), Gaps = 83/479 (17%)

Query: 51  SSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEH----LRGLSNLTSL 105
             + S+D+   +++D+    L       Q +  + C  +++   +     LR    L  L
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAEL 61

Query: 106 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 165
           + R +N +   G+             L+  +             K++ L+++ C  +T +
Sbjct: 62  NLR-SNELGDVGVHCVLQG-------LQTPSC------------KIQKLSLQNCC-LTGA 100

Query: 166 DMKPLSGL----TNLKSLQISCSKVTDSGIAYL-KGLQ----KLTLLNLEGCPVTAACL- 215
               LS        L+ L +S + + D+G+  L +GL     +L  L LE C ++AA   
Sbjct: 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160

Query: 216 ---DSLSALGSLFYLNLNRCQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVH-- 265
                L A      L ++   +++ G     +        L+ L L    +T +      
Sbjct: 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220

Query: 266 --LKGLTNLESLNLDSCGIGDEGLVNLT-----GLCNLKCLELSDTQVGSSGLRHLS--- 315
             +    +L  L L S  +GD G+  L          L+ L + +  + + G   L    
Sbjct: 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280

Query: 316 -GLTNLESINLSFTGISDGSLRKLAGL-----SSLKSLNLDARQITDTGLAALTSL---- 365
               +L+ ++L+   + D   R L          L+SL + +   T    +  +S+    
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340

Query: 366 TGLTHLDLFGARITDSGAAYL-----RNFKNLRSLEICGGGLTDAGVKHI----KDLSSL 416
             L  L +   R+ D+G   L     +    LR L +    ++D+    +        SL
Sbjct: 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400

Query: 417 TLLNLSQNCNLTDKTLELISGL-----TGLVSLNVSNSRITSAGLRHLKP-LKNLRSLT 469
             L+LS N  L D  +  +          L  L + +   +      L+   K+  SL 
Sbjct: 401 RELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 458

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  138 bits (351), Expect = 3e-36
 Identities = 89/437 (20%), Positives = 164/437 (37%), Gaps = 70/437 (16%)

Query: 51  SSLLSVDLSGSDVTDSGLIH----LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSN---- 101
                V L    +T++        L+    L  L+     ++ D G+  + +GL      
Sbjct: 28  QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCK 86

Query: 102 LTSLSFRRNNAITAQGMKAFAGLI----NLVKLDLERCTRIHGGLVNLKGLM-----KLE 152
           +  LS +    +T  G    +  +     L +L L        GL  L   +     +LE
Sbjct: 87  IQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145

Query: 153 SLNIKWCNCITDSDMKP----LSGLTNLKSLQISCSKVTDSGIAYL-KGLQ----KLTLL 203
            L +++C+ ++ +  +P    L    + K L +S + + ++G+  L +GL+    +L  L
Sbjct: 146 KLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204

Query: 204 NLEGCPVTAACLDSLSAL----GSLFYLNLNRCQLSDDGCEKFSKIG-----SLKVLNLG 254
            LE C VT+     L  +     SL  L L   +L D G  +           L+ L + 
Sbjct: 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264

Query: 255 FNEITDECLVH----LKGLTNLESLNLDSCGIGDEGLVNL-----TGLCNLKCLELSDTQ 305
              IT +        L+   +L+ L+L    +GDEG   L        C L+ L +    
Sbjct: 265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324

Query: 306 VGSSGLRHLSGL----TNLESINLSFTGISDGSLRKLA-----GLSSLKSLNLDARQITD 356
             ++   H S +      L  + +S   + D  +R+L        S L+ L L    ++D
Sbjct: 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384

Query: 357 TGLA----ALTSLTGLTHLDLFGARITDSGAAYL-----RNFKNLRSLEICGGGLTDAGV 407
           +  +     L +   L  LDL    + D+G   L     +    L  L +     ++   
Sbjct: 385 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 444

Query: 408 KHIKDL----SSLTLLN 420
             ++ L     SL +++
Sbjct: 445 DRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  138 bits (351), Expect = 3e-36
 Identities = 80/360 (22%), Positives = 142/360 (39%), Gaps = 51/360 (14%)

Query: 174 TNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSAL----GSLFYLN 228
            +++SL I C +++D+  A L   LQ+  ++ L+ C +T A    +S+      +L  LN
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 229 LNRCQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVH----LKGLTNLESLNLDS 279
           L   +L D G     +        ++ L+L    +T          L+ L  L+ L+L  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 280 CGIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRH----LSGLTNLESINLSFTGI 330
             +GD GL  L        C L+ L+L    + ++        L    + + + +S   I
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 331 SDGSLRKLAGL-----SSLKSLNLDARQITDTGLA----ALTSLTGLTHLDLFGARITDS 381
           ++  +R L          L++L L++  +T          + S   L  L L   ++ D 
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 382 GA-----AYLRNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCNLTDKTL 432
           G        L     LR+L I   G+T  G   +    +   SL  L+L+ N  L D+  
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGA 301

Query: 433 ELISGL-----TGLVSLNVSNSRITSAGLRH----LKPLKNLRSLTLESCKVTANDIKRL 483
            L+          L SL V +   T+A   H    L   + L  L + + ++    ++ L
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  136 bits (345), Expect = 2e-35
 Identities = 86/381 (22%), Positives = 155/381 (40%), Gaps = 57/381 (14%)

Query: 151 LESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAY----LKGLQKLTLLNL 205
           ++SL+I+ C  ++D+    L   L   + +++    +T++        L+    L  LNL
Sbjct: 5   IQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 206 EGCPVTAACLDSLSAL-----GSLFYLNLNRCQLSDDGC----EKFSKIGSLKVLNLGFN 256
               +    +  +          +  L+L  C L+  GC         + +L+ L+L  N
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 257 EITDECLVHL-----KGLTNLESLNLDSCGIGDEGLVN----LTGLCNLKCLELSDTQVG 307
            + D  L  L          LE L L+ C +           L    + K L +S+  + 
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183

Query: 308 SSGLRHLSGL-----TNLESINLSFTGISDGSLRKLAGL----SSLKSLNLDARQITDTG 358
            +G+R L          LE++ L   G++  + R L G+    +SL+ L L + ++ D G
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243

Query: 359 LAALT-----SLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDAGVKH 409
           +A L        + L  L ++   IT  G       LR  ++L+ L + G  L D G + 
Sbjct: 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303

Query: 410 I-----KDLSSLTLLNLSQNCNLTDKTL----ELISGLTGLVSLNVSNSRITSAGLRHL- 459
           +     +    L  L +  +C+ T         +++    L+ L +SN+R+  AG+R L 
Sbjct: 304 LCETLLEPGCQLESLWVK-SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362

Query: 460 ----KPLKNLRSLTLESCKVT 476
               +P   LR L L  C V+
Sbjct: 363 QGLGQPGSVLRVLWLADCDVS 383

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  140 bits (355), Expect = 6e-36
 Identities = 95/463 (20%), Positives = 164/463 (35%), Gaps = 27/463 (5%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110
           +++  ++L+ + +      +    S L SLD  F   IS    E  + L  L  L+ + N
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHN 83

Query: 111 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 168
             ++    K FA   NL +L L      +I            L +L++   N ++ + + 
Sbjct: 84  E-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP--FVKQKNLITLDLSH-NGLSSTKLG 139

Query: 169 PLSGLTNLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 226
               L NL+ L +S +K+    S    +     L  L L    +         A+G LF 
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199

Query: 227 LNLNRCQLSDDGCEKFSKIG---SLKVLNLGFNEITDECLVHLKGL--TNLESLNLDSCG 281
           L LN  QL     EK        S++ L+L  ++++        GL  TNL  L+L    
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 282 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL---------SFTGISD 332
           +   G  +   L  L+   L    +       L GL N+  +NL         S   +  
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319

Query: 333 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT----DSGAAYLRN 388
                   L  L+ LN++   I        T L  L +L L  +  +     +       
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379

Query: 389 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 448
              L  L +    ++         L  L +L+L  N    + T +   GL  +  + +S 
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439

Query: 449 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 491
           ++           + +L+ L L    +   D      + L NL
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  129 bits (326), Expect = 4e-32
 Identities = 84/414 (20%), Positives = 159/414 (38%), Gaps = 26/414 (6%)

Query: 99  LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNI 156
            +N+T L+   N  +       F     L  LD+     +++   L   + L  L+ LN+
Sbjct: 24  PTNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEPEL--CQKLPMLKVLNL 80

Query: 157 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 216
           +    ++    K  +  TNL  L +  + +           + L  L+L    +++  L 
Sbjct: 81  QHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

Query: 217 SLSALGSLFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNEITDECLVHLKGLTNLES 274
           +   L +L  L L+  ++     E+       SLK L L  N+I +        +  L  
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199

Query: 275 LNLDSCGIGD---EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL--TNLESINLSFTG 329
           L L++  +G    E L       +++ L LS++Q+ ++      GL  TNL  ++LS+  
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 330 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL---------FGARITD 380
           ++       A L  L+   L+   I      +L  L  + +L+L           A +  
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319

Query: 381 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC-NLTDKTLELISGL- 438
                 +  K L  L +    +          L +L  L+LS +  +L   T E    L 
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379

Query: 439 -TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 491
            + L  LN++ ++I+         L +L  L L   ++   ++   + R L N+
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG-QELTGQEWRGLENI 432

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  106 bits (267), Expect = 1e-24
 Identities = 69/361 (19%), Positives = 121/361 (33%), Gaps = 39/361 (10%)

Query: 169 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 228
           P    TN+  L ++ +++     A      +LT L++    ++    +    L  L  LN
Sbjct: 20  PDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79

Query: 229 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 288
           L   +LS    + F+   +L  L+L  N I            NL +L+L   G+    L 
Sbjct: 80  LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

Query: 289 NLTGLCNLKCLELSD-----------TQVGSSGLRHL---------------SGLTNLES 322
               L NL+ L LS+               +S L+ L                 +  L  
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199

Query: 323 INLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL--TGLTHLDLFGAR 377
           + L+           L      +S+++L+L   Q++ T       L  T LT LDL    
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 378 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN--------CNLTD 429
           +   G         L    +    +       +  L ++  LNL ++         +L  
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319

Query: 430 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 489
                   L  L  LN+ ++ I          L NL+ L+L +   +   +       L 
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379

Query: 490 N 490
           +
Sbjct: 380 H 380

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  106 bits (267), Expect = 1e-24
 Identities = 71/375 (18%), Positives = 138/375 (36%), Gaps = 30/375 (8%)

Query: 49  QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 108
           + ++L  +DLS +++   G         L+     +   I       L GL N+  L+ +
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLK 304

Query: 109 RN--------NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKW 158
           R+         ++      +F  L  L  L++E      I   +    GL+ L+ L++  
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM--FTGLINLKYLSLSN 362

Query: 159 CNCITDSDMKPLS----GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA- 213
            +  +   +   +      + L  L ++ +K++         L  L +L+L    +    
Sbjct: 363 -SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421

Query: 214 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT--DECLVHLKGLTN 271
                  L ++F + L+  +        F+ + SL+ L L    +   D      + L N
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481

Query: 272 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ--------VGSSGLRHLSGLTNLESI 323
           L  L+L +  I +     L GL  L+ L+L                 +  L GL++L  +
Sbjct: 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541

Query: 324 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SG 382
           NL   G  +  +     L  LK ++L    +     +   +   L  L+L    IT    
Sbjct: 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601

Query: 383 AAYLRNFKNLRSLEI 397
             +   F+NL  L++
Sbjct: 602 KVFGPAFRNLTELDM 616

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.7 bits (205), Expect = 6e-17
 Identities = 48/254 (18%), Positives = 89/254 (35%), Gaps = 9/254 (3%)

Query: 247 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 306
           S +V +    ++T    V     TN+  LNL    +      N T    L  L++    +
Sbjct: 5   SHEVADCSHLKLTQ---VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 307 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 366
                     L  L+ +NL    +S  S +  A  ++L  L+L +  I            
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 367 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD--AGVKHIKDLSSLTLLNLSQN 424
            L  LDL    ++ +        +NL+ L +    +    +    I   SSL  L LS N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 425 CNLTDKTLELISGLTGLVSLNVSNSRITS---AGLRHLKPLKNLRSLTLESCKVTANDIK 481
             + + +      +  L  L ++N ++       L       ++R+L+L + +++     
Sbjct: 182 -QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 482 RLQSRDLPNLVSFR 495
                   NL    
Sbjct: 241 TFLGLKWTNLTMLD 254

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  131 bits (331), Expect = 4e-33
 Identities = 64/260 (24%), Positives = 110/260 (42%), Gaps = 18/260 (6%)

Query: 165 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 224
             + P           +    VTD        L  +  +      + +  +  +  L ++
Sbjct: 12  KQIFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNV 67

Query: 225 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 284
             L LN  +L+D   +  + + +L  L L  N+I D  L  LK L  L+SL+L+  GI D
Sbjct: 68  TKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGISD 123

Query: 285 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 344
             +  L  L  L+ L L + ++  + +  LS LT L++++L    ISD  +  LAGL+ L
Sbjct: 124 --INGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKL 177

Query: 345 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 404
           ++L L    I+D  L AL  L  L  L+LF     +    +  N     +++   G  + 
Sbjct: 178 QNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG--SL 233

Query: 405 AGVKHIKDLSSLTLLNLSQN 424
              + I D       N+  +
Sbjct: 234 VTPEIISDDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  112 bits (282), Expect = 8e-27
 Identities = 64/277 (23%), Positives = 110/277 (39%), Gaps = 45/277 (16%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110
           +  +  +L    VTD   +   + +++  +  N    I    ++ ++ L N+T L    N
Sbjct: 21  AETIKDNLKKKSVTD--AVTQNELNSIDQIIANNS-DIKS--VQGIQYLPNVTKLFLNGN 75

Query: 111 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 170
             +T   +K    L NL  L L+                          N I D  +  L
Sbjct: 76  K-LT--DIKPLTNLKNLGWLFLDE-------------------------NKIKD--LSSL 105

Query: 171 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 230
             L  LKSL +  + ++D  I  L  L +L  L L    +T   +  LS L  L  L+L 
Sbjct: 106 KDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLE 161

Query: 231 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 290
             Q+SD      + +  L+ L L  N I+D  L  L GL NL+ L L S    ++ + + 
Sbjct: 162 DNQISD--IVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQ 217

Query: 291 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 327
           + L     ++ +D  + +     +S   + E  N+ +
Sbjct: 218 SNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKW 252

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  107 bits (269), Expect = 4e-25
 Identities = 50/244 (20%), Positives = 95/244 (38%), Gaps = 45/244 (18%)

Query: 248 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 307
           +         I    +            NL    + D   V    L ++  +  +++ + 
Sbjct: 1   MGETITVSTPIKQ--IFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK 56

Query: 308 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 367
           S  ++ +  L N+  + L+   ++D  ++ L  L +L  L LD  +I D  L++L  L  
Sbjct: 57  S--VQGIQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKIKD--LSSLKDLKK 110

Query: 368 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 427
           L  L L    I+D                          +  +  L  L  L L  N  +
Sbjct: 111 LKSLSLEHNGISD--------------------------INGLVHLPQLESLYLGNN-KI 143

Query: 428 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 487
           TD  + ++S LT L +L++ +++I+   +  L  L  L++L L    ++  D++ L    
Sbjct: 144 TD--ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS--DLRALAG-- 195

Query: 488 LPNL 491
           L NL
Sbjct: 196 LKNL 199

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  129 bits (326), Expect = 2e-32
 Identities = 92/434 (21%), Positives = 152/434 (35%), Gaps = 18/434 (4%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR-R 109
            +L S+ L  + ++   L        L+ LDF     I     E +  L   T+LS    
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLN 187

Query: 110 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG--LMKLESLNIKWCNCITDSDM 167
            N I      AF        L+      +      LK   +  L     +  +   D   
Sbjct: 188 GNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD-DEDISP 245

Query: 168 KPLSGL--TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 225
               GL   +++S+ +      +           L  L+L    ++      L  L +L 
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL-PSGLVGLSTLK 304

Query: 226 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI-TDECLVHLKGLTNLESLNLDSCGIGD 284
            L L+  +  +      S   SL  L++  N    +     L+ L NL  L+L    I  
Sbjct: 305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364

Query: 285 EGLVN--LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGL 341
               N  L  L +L+ L LS  +  S           LE ++L+FT +    +      L
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424

Query: 342 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE---IC 398
             LK LNL    +  +       L  L HL+L G            + + L  LE   + 
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

Query: 399 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 458
              L+         L  +  ++LS N  LT  ++E +S L G+  LN++++ I+      
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGIY-LNLASNHISIILPSL 542

Query: 459 LKPLKNLRSLTLES 472
           L  L   R++ L  
Sbjct: 543 LPILSQQRTINLRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  126 bits (318), Expect = 3e-31
 Identities = 89/456 (19%), Positives = 153/456 (33%), Gaps = 48/456 (10%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110
             L ++ L+ + +       L     L+ L F     IS      L     L SL    N
Sbjct: 81  HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSN 139

Query: 111 NAITAQGMKAFAGLINLVKLDLERC--TRIHGG-LVNLKGLMKLESLNIKWCNCITDSDM 167
           + I++  +        L  LD +      +    + +L+      SLN+   N I   + 
Sbjct: 140 H-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA-TNLSLNLNG-NDIAGIEP 196

Query: 168 KPLSGLT----NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 223
                      N    Q           + ++ L   T  +++   ++ A  + L  + S
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-S 255

Query: 224 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 283
           +  +NL +    +     F     L+ L+L    ++ E    L GL+ L+ L L +    
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE 314

Query: 284 DEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK--LAG 340
           +   ++ +   +L  L +   T+    G   L  L NL  ++LS   I         L  
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 341 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 400
           LS L+SLNL   +       A      L  LDL   R+    A                 
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP-------------- 420

Query: 401 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH-- 458
                     ++L  L +LNLS +  L   + +L  GL  L  LN+  +      ++   
Sbjct: 421 ---------FQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

Query: 459 -LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 493
            L+ L  L  L L        D+  +      +L  
Sbjct: 471 SLQTLGRLEILVLSF-----CDLSSIDQHAFTSLKM 501

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  125 bits (317), Expect = 5e-31
 Identities = 90/429 (20%), Positives = 161/429 (37%), Gaps = 22/429 (5%)

Query: 75  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 134
           ++ + L+F+F   +          L NLT L   R   I       F     L  L L  
Sbjct: 33  NSTECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTA 90

Query: 135 C--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 192
                +      L G   L+ L       I+  D  PL     L+SL +  + ++   + 
Sbjct: 91  NPLIFMAETA--LSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147

Query: 193 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSL--FYLNLNRCQLSDDGCEKFSKIGSLKV 250
                +KL +L+ +   +     + +S+L       LNLN   ++      F      + 
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA-VFQS 206

Query: 251 LNLGFNEITDECLVHLKG--LTNLESLNLDSCGIGDEGLVNLTGLC--NLKCLELSDTQV 306
           LN G  +        LK   + +L     +     D       GLC  +++ + L     
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 307 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 366
            +         + L+ ++L+ T +S+     L GLS+LK L L A +  +    + ++  
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLSELP-SGLVGLSTLKKLVLSANKFENLCQISASNFP 325

Query: 367 GLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH--IKDLSSLTLLNLSQ 423
            LTHL + G  +  + G   L N +NLR L++    +  +   +  +++LS L  LNLS 
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 424 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH-LKPLKNLRSLTLESCKVTANDIKR 482
           N        E       L  L+++ +R+     +   + L  L+ L L    +  +  + 
Sbjct: 386 N-EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444

Query: 483 LQSRDLPNL 491
                LP L
Sbjct: 445 FDG--LPAL 451

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  120 bits (302), Expect = 4e-29
 Identities = 89/403 (22%), Positives = 142/403 (35%), Gaps = 17/403 (4%)

Query: 99  LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNI 156
            ++   L F  N  +       F+ LINL  LDL RC    IH      +   +L++L +
Sbjct: 32  PNSTECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT--FQSQHRLDTLVL 88

Query: 157 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 216
              N +       LSG   LK L    + ++      L   + L  L L    +++  L 
Sbjct: 89  TA-NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147

Query: 217 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV--LNLGFNEITDECLVHLKGLTNLES 274
                  L  L+     +     E  S +       LNL  N+I              +S
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP-GAFDSAVFQS 206

Query: 275 LNLDSCGIGDEGLVNLTG--LCNLKCLELSDTQVGSSGLRHLSGL--TNLESINLSFTGI 330
           LN             L    + +L      D            GL   ++ESINL     
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 331 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 390
            + S       S L+ L+L A  +++   + L  L+ L  L L   +  +       NF 
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSANKFENLCQISASNFP 325

Query: 391 NLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC-NLTDKTLELISGLTGLVSLNVSN 448
           +L  L I G     + G   +++L +L  L+LS +    +D     +  L+ L SLN+S 
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 449 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 491
           +   S      K    L  L L   ++   D +     +L  L
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ-NLHLL 427

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  105 bits (263), Expect = 3e-24
 Identities = 74/387 (19%), Positives = 133/387 (34%), Gaps = 19/387 (4%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCS--NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 108
            SL        D  D      +     +++S++        +         S L  L   
Sbjct: 228 QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH-YFFNISSNTFHCFSGLQELDLT 286

Query: 109 RNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSD 166
             + ++ +      GL  L KL L       +     +      L  L+IK      +  
Sbjct: 287 ATH-LS-ELPSGLVGLSTLKKLVLSANKFENLCQI--SASNFPSLTHLSIKGNTKRLELG 342

Query: 167 MKPLSGLTNLKSLQISCSKVTDSGIAY--LKGLQKLTLLNLEGCPVTAACLDSLSALGSL 224
              L  L NL+ L +S   +  S      L+ L  L  LNL      +   ++      L
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402

Query: 225 FYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 283
             L+L   +L   D    F  +  LKVLNL  + +         GL  L+ LNL      
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462

Query: 284 DEGLV---NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 340
              +    +L  L  L+ L LS   + S      + L  +  ++LS   ++  S+  L+ 
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

Query: 341 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT-DSGAAYLRNFKNLRSLEICG 399
           L  +  LNL +  I+    + L  L+    ++L    +       Y   +      ++  
Sbjct: 523 LKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKL-- 579

Query: 400 GGLTDAGVKHIKDLSSLTLLNLSQNCN 426
               D   ++   L  + L +++ +C+
Sbjct: 580 EDTEDTLCENPPLLRGVRLSDVTLSCS 606

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.1 bits (211), Expect = 1e-17
 Identities = 49/249 (19%), Positives = 76/249 (30%), Gaps = 5/249 (2%)

Query: 247 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 306
           S + L   FN +          L NL  L+L  C I             L  L L+   +
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93

Query: 307 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 366
                  LSG   L+ +    TGIS      L    +L+SL L +  I+   L       
Sbjct: 94  IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153

Query: 367 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNC 425
            L  LD     I       + + +   +L +   G   AG+     D +    LN     
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213

Query: 426 NLTDKTLELI-SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 484
           NL      L  S +  L      +           + L     +++ES  +  +    + 
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE---MSVESINLQKHYFFNIS 270

Query: 485 SRDLPNLVS 493
           S        
Sbjct: 271 SNTFHCFSG 279

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  124 bits (312), Expect = 4e-32
 Identities = 73/291 (25%), Positives = 130/291 (44%), Gaps = 21/291 (7%)

Query: 165 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 224
           + + P   L N   +    S VTD        L  +T L+  G  VT   ++ +  L +L
Sbjct: 10  NVIFPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNL 65

Query: 225 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 284
             L L   Q++D        +  +  L L  N + +  +  + GL ++++L+L S  I D
Sbjct: 66  IGLELKDNQITD--LAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITD 121

Query: 285 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 344
             +  L GL NL+ L L   Q+  + +  L+GLTNL+ +++    +SD  L  LA LS L
Sbjct: 122 --VTPLAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKL 175

Query: 345 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 404
            +L  D  +I+D  ++ L SL  L  + L   +I+D     L N  NL  + +    +T+
Sbjct: 176 TTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231

Query: 405 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 455
              + +   ++L + N+ +  +        IS      S N++ +  +   
Sbjct: 232 ---QPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFIN 279

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  117 bits (295), Expect = 9e-30
 Identities = 65/247 (26%), Positives = 117/247 (47%), Gaps = 19/247 (7%)

Query: 247 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 306
           +   +  G + +TD   V    L  + +L+    G+    +  +  L NL  LEL D Q+
Sbjct: 20  NAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQI 75

Query: 307 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 366
             + L  L  LT +  + LS   + +  +  +AGL S+K+L+L + QITD  +  L  L+
Sbjct: 76  --TDLAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITD--VTPLAGLS 129

Query: 367 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 426
            L  L L   +IT+     L    NL+ L I    ++D  +  + +LS LT L    N  
Sbjct: 130 NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDN-K 184

Query: 427 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 486
           ++D  +  ++ L  L+ +++ N++I+   +  L    NL  +TL +  +T   +    + 
Sbjct: 185 ISD--ISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTITNQPVFYNNNL 240

Query: 487 DLPNLVS 493
            +PN+V 
Sbjct: 241 VVPNVVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  100 bits (250), Expect = 1e-23
 Identities = 57/259 (22%), Positives = 115/259 (44%), Gaps = 25/259 (9%)

Query: 68  LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 127
           +      +N   +       ++D        L  +T+LS      +T   ++    L NL
Sbjct: 12  IFPDPALANAIKIAAGKS-NVTD--TVTQADLDGITTLSAFGTG-VTT--IEGVQYLNNL 65

Query: 128 VKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 185
           + L+L+  + T +      LK L K+  L +   N + +  +  ++GL ++K+L ++ ++
Sbjct: 66  IGLELKDNQITDL----APLKNLTKITELEL-SGNPLKN--VSAIAGLQSIKTLDLTSTQ 118

Query: 186 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 245
           +TD  +  L GL  L +L L+   +T   +  L+ L +L YL++   Q+SD      + +
Sbjct: 119 ITD--VTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSD--LTPLANL 172

Query: 246 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 305
             L  L    N+I+D  +  L  L NL  ++L +  I D  +  L    NL  + L++  
Sbjct: 173 SKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQT 228

Query: 306 VGSSGLRHLSGLTNLESIN 324
           + +  + + + L     + 
Sbjct: 229 ITNQPVFYNNNLVVPNVVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 17/180 (9%)

Query: 52  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 111
           S+ ++DL+ + +TD  +  L   SNLQ L  +   QI++  +  L GL+NL  LS   N 
Sbjct: 108 SIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLN-QITN--ISPLAGLTNLQYLSIG-NA 161

Query: 112 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 171
            ++   +   A L  L  L  +        + ++  L  L +L          SD+ PL+
Sbjct: 162 QVS--DLTPLANLSKLTTLKAD-----DNKISDISPLASLPNLIEVHLKNNQISDVSPLA 214

Query: 172 GLTNLKSLQISCSKVTDSGIAYLKGLQKL-TLLNLEGCPVTAACLDSLSALGSLFYLNLN 230
             +NL  + ++   +T+  + Y   L     +    G P+      ++S  G+    NL 
Sbjct: 215 NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIA---PATISDNGTYASPNLT 271

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  126 bits (319), Expect = 4e-31
 Identities = 84/466 (18%), Positives = 169/466 (36%), Gaps = 41/466 (8%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFR 108
            +L  +DL  S +        +   +L  L   FC  +SD  L+    R L  LT L   
Sbjct: 73  PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLS 131

Query: 109 RNNAITAQGMKAFAGLINLVKLDLERC--TRIHGG-LVNLKGLMKLESLNIKWCNCITDS 165
           +N   +     +F  L +L  +D        +    L  L+G   L   ++   +  +  
Sbjct: 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK-TLSFFSLAANSLYSRV 190

Query: 166 DMKPLSGLTNLKSLQIS-----------------CSKVTDSGIAYLKGLQKLTLLNLEGC 208
            +     +   +++ +                   + ++ S    L     +        
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250

Query: 209 PVTAACLDSLSALG--SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 266
            +     ++ + L   S+ +L+L+   +       F  +  LKVLNL +N+I        
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310

Query: 267 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 326
            GL NL+ LNL    +G+    N  GL  +  ++L    +     +    L  L++++L 
Sbjct: 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370

Query: 327 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAY 385
              ++      +  + S+  + L   ++       LT       + L   R+ +     +
Sbjct: 371 DNALTT-----IHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLDILYF 421

Query: 386 LRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQN----CNLTDKTLELISGLTG 440
           L    +L+ L +     +  +G +   +  SL  L L +N       T+   ++  GL+ 
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

Query: 441 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 486
           L  L ++++ + S        L  LR L+L S ++T      L + 
Sbjct: 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN 527

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  122 bits (307), Expect = 1e-29
 Identities = 86/470 (18%), Positives = 156/470 (33%), Gaps = 39/470 (8%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110
           ++   + LS + +             LQ L+            E  R L NL  L    +
Sbjct: 24  NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83

Query: 111 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN---LKGLMKLESLNIKWCNCITDSDM 167
             I      AF GL +L +L L  C  +   ++     + L  L  L++      +    
Sbjct: 84  K-IYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 168 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL--LNLEGCPVTAACLDSLSALGSLF 225
                L +LKS+  S +++       L+ LQ  TL   +L    + +          + F
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201

Query: 226 ------YLNLNRCQLSDDGCEKFSKIGS------------LKVLNLGFNEITDECLVHLK 267
                  L+++    + D    FS   S            +     GF+ I D       
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261

Query: 268 GL--TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 325
           GL  +++  L+L    +          L +LK L L+  ++         GL NL+ +NL
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321

Query: 326 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 385
           S+  + +       GL  +  ++L    I          L  L  LDL    +T      
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT----- 376

Query: 386 LRNFKNLRSLEICGGGLTDAGVKHIKDLS-SLTLLNLSQNCNLTDKTLELISGLTGLVSL 444
           +    ++  + + G  L       +  ++ +  L++LS+N       L  +  +  L  L
Sbjct: 377 IHFIPSIPDIFLSGNKLV-----TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQIL 431

Query: 445 NVSNSRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 493
            ++ +R +S           +L  L L    +       L       L  
Sbjct: 432 ILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  115 bits (289), Expect = 2e-27
 Identities = 80/426 (18%), Positives = 139/426 (32%), Gaps = 50/426 (11%)

Query: 74  CSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 132
           CS    + F          L  + + L+    L    N  I      +F  L  L  L+L
Sbjct: 2   CSFDGRIAFY-----RFCNLTQVPQVLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLEL 55

Query: 133 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS-DMKPLSGLTNLKSLQISCSKVTDSGI 191
                                           + D +    L NL+ L +  SK+     
Sbjct: 56  GS-------------------------QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90

Query: 192 AYLKGLQKLTLLNLEGCPVTAACL--DSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSL 248
              +GL  L  L L  C ++ A L       L +L  L+L++ Q+        F K+ SL
Sbjct: 91  DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150

Query: 249 KVLNLGFNEITDECLVHLKGLT--NLESLNLDSCGI-GDEGLVNLTGLCNLKCLELSDTQ 305
           K ++   N+I   C   L+ L    L   +L +  +     +     +   + + L    
Sbjct: 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210

Query: 306 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 365
           V  +G         ++        IS      L     +         I D        L
Sbjct: 211 VSGNGW-------TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263

Query: 366 --TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 423
             + + HLDL    +    +      K+L+ L +    +     +    L +L +LNLS 
Sbjct: 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323

Query: 424 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA-NDIKR 482
           N  L +       GL  +  +++  + I     +  K L+ L++L L    +T  + I  
Sbjct: 324 N-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS 382

Query: 483 LQSRDL 488
           +    L
Sbjct: 383 IPDIFL 388

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  107 bits (270), Expect = 5e-25
 Identities = 80/420 (19%), Positives = 146/420 (34%), Gaps = 29/420 (6%)

Query: 69  IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL--IN 126
           + +        +  NF   IS      L    ++    F  +N I       FAGL   +
Sbjct: 209 LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN-IKDPDQNTFAGLARSS 267

Query: 127 LVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 184
           +  LDL       ++  +   + L  L+ LN+ + N I     +   GL NL+ L +S +
Sbjct: 268 VRHLDLSHGFVFSLNSRV--FETLKDLKVLNLAY-NKINKIADEAFYGLDNLQVLNLSYN 324

Query: 185 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 244
            + +   +   GL K+  ++L+   +      +   L  L  L+L    L+         
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHF 379

Query: 245 IGSLKVLNLGFNEITDECLVHLKGLT-NLESLNLDSCGI-GDEGLVNLTGLCNLKCLELS 302
           I S+  + L  N++       L  +      ++L    +   + L  L  + +L+ L L+
Sbjct: 380 IPSIPDIFLSGNKLV-----TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN 434

Query: 303 DTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKL-----AGLSSLKSLNLDARQITD 356
             +  S       S   +LE + L    +      +L      GLS L+ L L+   +  
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494

Query: 357 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 416
                 + LT L  L L   R+T      L    NL  L+I    L          LS L
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVSLSVL 552

Query: 417 TLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 475
            + +    C     T    ++     ++   ++             L +L +   +  +V
Sbjct: 553 DITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEV 612

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 80.6 bits (199), Expect = 4e-16
 Identities = 56/301 (18%), Positives = 98/301 (32%), Gaps = 32/301 (10%)

Query: 219 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE-CLVHLKGLTNLESLNL 277
             L +   L L+   +       F  +  L++L LG             + L NL  L+L
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 278 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH--LSGLTNLESINLSFTGISDGSL 335
            S  I         GL +L  L L    +  + L+      L  L  ++LS   I    L
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140

Query: 336 RK-LAGLSSLKSLNLDARQITDTGLAALTSLTG--LTHLDLFGARITDSGAAYL------ 386
                 L+SLKS++  + QI       L  L G  L+   L    +    +         
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 387 ------------RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 434
                        N   +         ++ +    +     +       + N+ D     
Sbjct: 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH-NIKDPDQNT 259

Query: 435 ISGL--TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 492
            +GL  + +  L++S+  + S   R  + LK+L+ L L       N I ++       L 
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY-----NKINKIADEAFYGLD 314

Query: 493 S 493
           +
Sbjct: 315 N 315

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.5 bits (191), Expect = 4e-15
 Identities = 51/273 (18%), Positives = 84/273 (30%), Gaps = 26/273 (9%)

Query: 242 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN-LTGLCNLKCLE 300
              + + + L L FN I          L  L+ L L S              L NL+ L+
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 301 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK--LAGLSSLKSLNLDARQITDTG 358
           L  +++         GL +L  + L F G+SD  L+      L +L  L+L   QI    
Sbjct: 80  LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

Query: 359 L-AALTSLTGLTHLDLFGARITDSGAAYLRNF--KNLRSLEICGGGLTD------AGVKH 409
           L  +   L  L  +D    +I       L     K L    +    L            +
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 410 IKDLSSLTLLNLSQNCNLTDKTLELISGLTG-----------LVSLNVSNSRITSAGLRH 458
                 L +L++S N    D T    + ++            ++        I       
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP---D 256

Query: 459 LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 491
                 L   ++    ++   +  L SR    L
Sbjct: 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.0 bits (187), Expect = 1e-14
 Identities = 49/251 (19%), Positives = 91/251 (36%), Gaps = 27/251 (10%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110
             L  ++L+ + +            NLQ L+ ++   + +    +  GL  +  +  ++N
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKN 348

Query: 111 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGL--------------MKLESL 154
           + I     + F  L  L  LDL     T IH  + ++  +              +    +
Sbjct: 349 H-IAIIQDQTFKFLEKLQTLDLRDNALTTIHF-IPSIPDIFLSGNKLVTLPKINLTANLI 406

Query: 155 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGC----- 208
           ++          +  L  + +L+ L ++ ++ +  SG         L  L L        
Sbjct: 407 HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466

Query: 209 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 268
             T  C D    L  L  L LN   L+      FS + +L+ L+L  N +T   L H   
Sbjct: 467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT--VLSHNDL 524

Query: 269 LTNLESLNLDS 279
             NLE L++  
Sbjct: 525 PANLEILDISR 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 38/170 (22%), Positives = 61/170 (35%), Gaps = 14/170 (8%)

Query: 330 ISDGSLRKL----AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAA 384
           I+      L      L++ + L L    I     ++   L  L  L+L       +    
Sbjct: 8   IAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE 67

Query: 385 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE--LISGLTGLV 442
             RN  NLR L++    +        + L  L  L L     L+D  L+      L  L 
Sbjct: 68  AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALT 126

Query: 443 SLNVSNSRITSAGLR-HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 491
            L++S ++I S  L      L +L+S+   S     N I  +   +L  L
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS-----NQIFLVCEHELEPL 171

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  123 bits (310), Expect = 3e-30
 Identities = 81/439 (18%), Positives = 150/439 (34%), Gaps = 29/439 (6%)

Query: 51  SSLLSVDLSGSDVTDSGLI-HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR- 108
            +L  ++++ + +    L  +  + +NL  +D ++   I    +  L+ L     ++   
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSL 186

Query: 109 --RNNAITAQGMKAFAGLINLVKLDLERCTRI-------HGGLVNLKGLMKLESLNIKWC 159
               N I     +AF G+  L +L L                L  L    +L     K  
Sbjct: 187 DMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVH-RLILGEFKDE 244

Query: 160 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDS 217
             +   +   + GL ++   +   +   D          L  ++ ++L G  +    L+ 
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LED 302

Query: 218 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 277
           +        L++ RCQL          +  LK L L  N+ +         L +L  L+L
Sbjct: 303 VPKHFKWQSLSIIRCQLKQFP---TLDLPFLKSLTLTMNKGSI--SFKKVALPSLSYLDL 357

Query: 278 DSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GS 334
               +        +  G  +L+ L+LS          +  GL  L+ ++   + +     
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTE 416

Query: 335 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY-LRNFKNLR 393
                 L  L  L++               LT L  L + G    D+  +    N  NL 
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476

Query: 394 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 453
            L++    L          L  L LLN+S N NL        + L  L +L+ S +RI +
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNRIET 535

Query: 454 AGLRHLKPLKNLRSLTLES 472
           +        K+L    L +
Sbjct: 536 SKGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  122 bits (308), Expect = 6e-30
 Identities = 86/460 (18%), Positives = 154/460 (33%), Gaps = 34/460 (7%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110
             L ++ L+G+ +           ++L++L      +++      +  L  L  L+   N
Sbjct: 80  HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHN 138

Query: 111 NAITAQGMKAFAGLINLVKLDLERC--TRIHGG-LVNLKGL-MKLESLNIKWCNCITDSD 166
              + +    F+ L NLV +DL       I    L  L+       SL++     I    
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQ 197

Query: 167 MKPLSGLTNLKSLQISC----SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 222
            +   G+  L  L +      S +  + +  L GL    L+  E        +   S + 
Sbjct: 198 DQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256

Query: 223 SLF-----YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 277
            L         L       D   KF  + ++  ++L    I    L  +      +SL++
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSI 314

Query: 278 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGS 334
             C +          L  LK L L+  +   S       L +L  ++LS    +     S
Sbjct: 315 IRCQLKQ---FPTLDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCS 369

Query: 335 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY-LRNFKNLR 393
              L G +SL+ L+L          A    L  L HLD   + +          + + L 
Sbjct: 370 YSDL-GTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427

Query: 394 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 453
            L+I               L+SL  L ++ N    +    + +  T L  L++S  ++  
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

Query: 454 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 493
                   L  L+ L +       N++  L S     L S
Sbjct: 488 ISWGVFDTLHRLQLLNMSH-----NNLLFLDSSHYNQLYS 522

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  100 bits (252), Expect = 8e-23
 Identities = 72/360 (20%), Positives = 129/360 (35%), Gaps = 20/360 (5%)

Query: 76  NLQSLDFNFCIQISDGGLEHLRGLSNLTSLS-----FRRNNAITAQGMKAFAGLINLVK- 129
            L  L        S+     L+ L+ L         F+    +         GL ++   
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 130 -LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 188
              L         +V    L  + ++++     I    ++ +      +SL I   ++  
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAG-VSIKY--LEDVPKHFKWQSLSIIRCQLKQ 321

Query: 189 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-- 246
                L  L+ LTL   +G     +      AL SL YL+L+R  LS  GC  +S +G  
Sbjct: 322 FPTLDLPFLKSLTLTMNKG-----SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376

Query: 247 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQ 305
           SL+ L+L FN        +  GL  L+ L+     +           L  L  L++S T 
Sbjct: 377 SLRHLDLSFNGAIIMSA-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435

Query: 306 VGSSGLRHLSGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNLDARQITDTGLAALTS 364
                     GLT+L ++ ++     D +L    A  ++L  L+L   Q+         +
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495

Query: 365 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 424
           L  L  L++    +    +++     +L +L+     +  +         SL   NL+ N
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 96.6 bits (241), Expect = 2e-21
 Identities = 82/435 (18%), Positives = 141/435 (32%), Gaps = 58/435 (13%)

Query: 100 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIH----GGLVNLK------- 146
           S+  ++    N  +      +F+    L  LDL RC    I      GL +L        
Sbjct: 32  SSTKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 147 -----------GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI-AYL 194
                      GL  LE+L       +   +  P+  L  LK L ++ + +    + AY 
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVE-TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 195 KGLQKLTLLNLEGCPVTAACLDSLSALG----SLFYLNLNRCQLSDDGCEKFSKIGSLKV 250
             L  L  ++L    +    ++ L  L         L+++   +     + F  I  L  
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHE 208

Query: 251 LNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVN------LTGLCNLKCLELSD 303
           L L  N  +   +   L+ L  L    L      DE  +       + GLC++   E   
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 304 T--QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 361
           T     S  +     L N+ +++L+   I    L  +      +SL++   Q+       
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIK--YLEDVPKHFKWQSLSIIRCQLKQF---P 323

Query: 362 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT--DAGVKHIKDLSSLTLL 419
              L  L  L L   + + S         +L  L++    L+            +SL  L
Sbjct: 324 TLDLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381

Query: 420 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH-LKPLKNLRSLTLESCKVTAN 478
           +LS N      +     GL  L  L+  +S +           L+ L  L +        
Sbjct: 382 DLSFN-GAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY-----T 434

Query: 479 DIKRLQSRDLPNLVS 493
           + K         L S
Sbjct: 435 NTKIDFDGIFLGLTS 449

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 94.3 bits (235), Expect = 1e-20
 Identities = 69/360 (19%), Positives = 121/360 (33%), Gaps = 44/360 (12%)

Query: 49  QGSSLLSVDLSGSDVTDSGL-IHLKDCSNLQSLD-----FNFCIQISDGGLEHLRGLSNL 102
           QG  L  + L G+  + + +   L++ + L         F     +       + GL ++
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 103 TSLSFRRN-NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 161
           T   FR       +  +  F  L N+  + L     I   L ++    K +SL+I     
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKY-LEDVPKHFKWQSLSIIR-CQ 318

Query: 162 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 221
           +      P   L  LKSL ++ +K + S       L  L+ L+L    ++ +   S S L
Sbjct: 319 LKQF---PTLDLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDL 373

Query: 222 G--SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLD 278
           G  SL +L+L+           F  +  L+ L+   + +           L  L  L++ 
Sbjct: 374 GTNSLRHLDLSFNGAIIMSAN-FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 279 SCGIGD------EGLVNLT-------------------GLCNLKCLELSDTQVGSSGLRH 313
                        GL +L                       NL  L+LS  Q+       
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492

Query: 314 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 373
              L  L+ +N+S   +          L SL +L+    +I  +          L   +L
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 552

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  117 bits (295), Expect = 1e-28
 Identities = 75/303 (24%), Positives = 115/303 (37%), Gaps = 7/303 (2%)

Query: 75  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 134
           +  + LD     +I     +      +L  L    N  ++A    AF  L NL  L L  
Sbjct: 32  TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRS 89

Query: 135 C--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 192
                I  G+    GL  L  L+I   N I          L NLKSL++  + +      
Sbjct: 90  NRLKLIPLGV--FTGLSNLTKLDISE-NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR 146

Query: 193 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 252
              GL  L  L LE C +T+   ++LS L  L  L L    ++      F ++  LKVL 
Sbjct: 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206

Query: 253 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 312
           +      D    +     NL SL++  C +     + +  L  L+ L LS   + +    
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266

Query: 313 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 372
            L  L  L+ I L    ++        GL+ L+ LN+   Q+T    +   S+  L  L 
Sbjct: 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326

Query: 373 LFG 375
           L  
Sbjct: 327 LDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  113 bits (285), Expect = 2e-27
 Identities = 60/289 (20%), Positives = 112/289 (38%), Gaps = 1/289 (0%)

Query: 160 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 219
           N I   +    +   +L+ L+++ + V+         L  L  L L    +    L   +
Sbjct: 42  NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101

Query: 220 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 279
            L +L  L+++  ++       F  + +LK L +G N++         GL +LE L L+ 
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161

Query: 280 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 339
           C +       L+ L  L  L L    + +        L  L+ + +S     D       
Sbjct: 162 CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 340 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 399
              +L SL++    +T     A+  L  L  L+L    I+    + L     L+ +++ G
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281

Query: 400 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 448
           G L        + L+ L +LN+S N  LT     +   +  L +L + +
Sbjct: 282 GQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  110 bits (277), Expect = 3e-26
 Identities = 69/299 (23%), Positives = 109/299 (36%), Gaps = 9/299 (3%)

Query: 200 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 259
             LL+L    +     D  ++   L  L LN   +S      F+ + +L+ L L  N + 
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 260 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 319
              L    GL+NL  L++    I          L NLK LE+ D  +     R  SGL +
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153

Query: 320 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 379
           LE + L    ++      L+ L  L  L L    I      +   L  L  L++      
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213

Query: 380 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 439
           D+         NL SL I    LT      ++ L  L  LNLS N  ++     ++  L 
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELL 272

Query: 440 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR---DLPNLVSFR 495
            L  + +   ++        + L  LR L +       N +  L+      + NL +  
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG-----NQLTTLEESVFHSVGNLETLI 326

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 83.6 bits (207), Expect = 2e-17
 Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 1/182 (0%)

Query: 295 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 354
             + L+L   ++ +      +   +LE + L+   +S         L +L++L L + ++
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 355 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 414
               L   T L+ LT LD+   +I        ++  NL+SLE+    L     +    L+
Sbjct: 93  KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152

Query: 415 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 474
           SL  L L +  NLT    E +S L GL+ L + +  I +      K L  L+ L +    
Sbjct: 153 SLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

Query: 475 VT 476
             
Sbjct: 212 YL 213

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 71.7 bits (176), Expect = 1e-13
 Identities = 38/177 (21%), Positives = 61/177 (34%), Gaps = 9/177 (5%)

Query: 318 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 377
           T    ++L    I   +  + A    L+ L L+   ++     A  +L  L  L L   R
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 378 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 437
           +            NL  L+I    +        +DL +L  L +  N +L   +    SG
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSG 150

Query: 438 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS---RDLPNL 491
           L  L  L +    +TS     L  L  L  L L        +I  ++    + L  L
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH-----LNINAIRDYSFKRLYRL 202

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 3/188 (1%)

Query: 75  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 134
           ++L+ L    C  ++    E L  L  L  L  R  N I A    +F  L  L  L++  
Sbjct: 152 NSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISH 209

Query: 135 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 194
              +     N    + L SL+I  CN +T      +  L  L+ L +S + ++    + L
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268

Query: 195 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 254
             L +L  + L G  +      +   L  L  LN++  QL+      F  +G+L+ L L 
Sbjct: 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328

Query: 255 FNEITDEC 262
            N +  +C
Sbjct: 329 SNPLACDC 336

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 35/157 (22%), Positives = 60/157 (38%), Gaps = 9/157 (5%)

Query: 342 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 401
           +  + L+L   +I         S   L  L+L    ++        N  NLR+L +    
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 402 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 461
           L    +     LS+LT L++S+N  +      +   L  L SL V ++ +     R    
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 462 LKNLRSLTLESCKVTANDIKRLQS---RDLPNLVSFR 495
           L +L  LTLE       ++  + +     L  L+  R
Sbjct: 151 LNSLEQLTLEK-----CNLTSIPTEALSHLHGLIVLR 182

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  116 bits (292), Expect = 7e-28
 Identities = 93/460 (20%), Positives = 163/460 (35%), Gaps = 33/460 (7%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110
           S L ++ L+G+ +    L      S+LQ L       ++      +  L  L  L+   N
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN 134

Query: 111 NAITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGL-MKLESLNIKWCNCITDSD 166
              + +  + F+ L NL  LDL      +     L  L  + +   SL++   N +    
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL-NPMNFIQ 193

Query: 167 MKPLSGLTNLKSLQISCSK----VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 222
                 +  L  L +  +     V  + I  L GL+   L+  E            SAL 
Sbjct: 194 PGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 223 SLFYLNLNRCQLS------DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 276
            L  L +   +L+      DD  + F+ + ++   +L    I    +         + L 
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLE 310

Query: 277 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL- 335
           L +C  G         L       L+ T            L +LE ++LS  G+S     
Sbjct: 311 LVNCKFG-----QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 365

Query: 336 -RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLR 393
            +   G +SLK L+L    +     +    L  L HLD   + +   S  +   + +NL 
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 394 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 453
            L+I       A       LSSL +L ++ N    +   ++ + L  L  L++S  ++  
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

Query: 454 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 493
                   L +L+ L +       N+   L +     L S
Sbjct: 485 LSPTAFNSLSSLQVLNMSH-----NNFFSLDTFPYKCLNS 519

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  102 bits (256), Expect = 2e-23
 Identities = 80/395 (20%), Positives = 143/395 (36%), Gaps = 31/395 (7%)

Query: 100 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIK 157
            +  +L    N  +   G  +F     L  LDL RC    I  G    + L  L +L + 
Sbjct: 28  FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILT 84

Query: 158 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL-D 216
             N I    +   SGL++L+ L    + +       +  L+ L  LN+    + +  L +
Sbjct: 85  G-NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 217 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV----LNLGFNEITDECLVHLKGLTNL 272
             S L +L +L+L+  ++    C     +  + +    L+L  N +        K +  L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RL 202

Query: 273 ESLNLDSCGIGDEGLVN-LTGLCNLKCLELSDTQVGSSG------LRHLSGLTNLESINL 325
             L L +       +   + GL  L+   L   +  + G         L GL NL     
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 326 SFTGIS---DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 382
               +    D  +     L+++ S +L +  I    +   +   G  HL+L   +     
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 383 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN-CNLTDKTLELISGLTGL 441
              L++ K L      GG           DL SL  L+LS+N  +      +   G T L
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAF-----SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 442 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 476
             L++S + + +    +   L+ L  L  +   + 
Sbjct: 376 KYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLK 409

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 92.4 bits (230), Expect = 5e-20
 Identities = 66/363 (18%), Positives = 107/363 (29%), Gaps = 24/363 (6%)

Query: 49  QGSSLLSVDLSG-------SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN 101
           +   L  + L               GL  L+    L   +F     +       L GL N
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE-VHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 102 LT--SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 159
           LT         +      +  F  L N+    L   T     + +       + L +  C
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT--IERVKDFSYNFGWQHLELVNC 314

Query: 160 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA--ACLDS 217
                     L  L  L                    L  L  L+L    ++    C  S
Sbjct: 315 K-FGQFPTLKLKSLKRLTFTSNKGGNAFS-----EVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 218 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLN 276
                SL YL+L+   +       F  +  L+ L+   + +           L NL  L+
Sbjct: 369 DFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 277 LDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSL 335
           +              GL +L+ L+++      +      + L NL  ++LS   +   S 
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

Query: 336 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN-FKNLRS 394
                LSSL+ LN+               L  L  LD     I  S    L++   +L  
Sbjct: 488 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 547

Query: 395 LEI 397
           L +
Sbjct: 548 LNL 550

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.5 bits (194), Expect = 1e-15
 Identities = 56/235 (23%), Positives = 88/235 (37%), Gaps = 11/235 (4%)

Query: 48  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 107
           S       ++L          + LK    L           S+  L  L  L     LS 
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL----DLS- 355

Query: 108 RRNNAITAQGM--KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 165
              N ++ +G   ++  G  +L  LDL     +     N  GL +LE L+ +  N    S
Sbjct: 356 --RNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 166 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSL 224
           +      L NL  L IS +    +      GL  L +L + G         D  + L +L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 225 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 279
            +L+L++CQL       F+ + SL+VLN+  N          K L +L+ L+   
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 527

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 64.3 bits (157), Expect = 5e-11
 Identities = 41/231 (17%), Positives = 86/231 (37%), Gaps = 9/231 (3%)

Query: 270 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 329
            + ++L+L    +   G  +      L+ L+LS  ++ +        L++L ++ L+   
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 330 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRN 388
           I   +L   +GLSSL+ L      +       +  L  L  L++    I       Y  N
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 389 FKNLRSLEICGGGLTDAGVKHIKDLSSLTL----LNLSQNCNLTDKTLELISGLTGLVSL 444
             NL  L++    +       ++ L  + L    L+LS N  +          +  L  L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIR-LHKL 205

Query: 445 NVSNSRITSAGLRH-LKPLKNLRSLTLESCKVT-ANDIKRLQSRDLPNLVS 493
            + N+  +   ++  ++ L  L    L   +     ++++     L  L +
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score =  111 bits (279), Expect = 2e-27
 Identities = 60/305 (19%), Positives = 104/305 (34%), Gaps = 19/305 (6%)

Query: 132 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVT 187
           L     +    V  K   +L S    W                 L S  +          
Sbjct: 24  LCLPELLKVSGVC-KRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFM 82

Query: 188 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIG 246
           D  +A      ++  ++L    +  + L  + S    L  L+L   +LSD      +K  
Sbjct: 83  DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 142

Query: 247 SLKVLNL-GFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLC--NLKCLEL 301
           +L  LNL G +  ++  L  L    + L+ LNL  C    ++ +          +  L L
Sbjct: 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202

Query: 302 SD--TQVGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITD 356
           S     +  S L  L     NL  ++LS    + +   ++   L+ L+ L+L     I  
Sbjct: 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 262

Query: 357 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 416
             L  L  +  L  L +FG  + D     L+  + L  L+I     T      I +  + 
Sbjct: 263 ETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGNKKNQ 319

Query: 417 TLLNL 421
            +  +
Sbjct: 320 EIWGI 324

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score =  109 bits (273), Expect = 1e-26
 Identities = 56/260 (21%), Positives = 101/260 (38%), Gaps = 15/260 (5%)

Query: 227 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 286
           L+L    L  D   +    G +           D+ L        ++ ++L +  I    
Sbjct: 52  LDLTGKNLHPDVTGRLLSQGVIAFRCPRS--FMDQPLAEHFSPFRVQHMDLSNSVIEVST 109

Query: 287 LVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GLSS 343
           L  +   C  L+ L L   ++    +  L+  +NL  +NLS  +G S+ +L+ L    S 
Sbjct: 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169

Query: 344 LKSLNL-DARQITDTGLAALTS--LTGLTHLDLFG--ARITDSGAAYL-RNFKNLRSLEI 397
           L  LNL      T+  +    +     +T L+L G    +  S  + L R   NL  L++
Sbjct: 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229

Query: 398 CG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 456
                L +   +    L+ L  L+LS+  ++  +TL  +  +  L +L V    +    L
Sbjct: 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTL 288

Query: 457 RHLKPLKNLRSLTLESCKVT 476
           + L   + L  L +     T
Sbjct: 289 QLL--KEALPHLQINCSHFT 306

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score =  108 bits (272), Expect = 2e-26
 Identities = 43/232 (18%), Positives = 83/232 (35%), Gaps = 10/232 (4%)

Query: 29  RDCALQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQI 88
           +   L    +    +  I SQ S L ++ L G  ++D  +  L   SNL  L+ + C   
Sbjct: 96  QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF 155

Query: 89  SDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA--GLINLVKLDLERCTRI--HGGLV 143
           S+  L+ L    S L  L+       T + ++         + +L+L    +      L 
Sbjct: 156 SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 215

Query: 144 NL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLT 201
            L +    L  L++     + +   +    L  L+ L +S C  +    +  L  +  L 
Sbjct: 216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 275

Query: 202 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 253
            L + G  V    L  L    +L +L +N    +           + ++  +
Sbjct: 276 TLQVFGI-VPDGTLQLLKE--ALPHLQINCSHFTTIARPTIGNKKNQEIWGI 324

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score =  107 bits (268), Expect = 7e-26
 Identities = 46/263 (17%), Positives = 93/263 (35%), Gaps = 13/263 (4%)

Query: 70  HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 129
                 +   + F       D  L        +  +    +    +      +    L  
Sbjct: 63  VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122

Query: 130 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVT 187
           L LE        +  L     L  LN+  C+  ++  ++ L S  + L  L +S C   T
Sbjct: 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182

Query: 188 DSGIAYL--KGLQKLTLLNLEGCP--VTAACLDSLSA-LGSLFYLNLNRC-QLSDDGCEK 241
           +  +        + +T LNL G    +  + L +L     +L +L+L+    L +D  ++
Sbjct: 183 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 242

Query: 242 FSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC---NLK 297
           F ++  L+ L+L    +I  E L+ L  +  L++L +    + D  L  L        + 
Sbjct: 243 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQIN 301

Query: 298 CLELSDTQVGSSGLRHLSGLTNL 320
           C   +     + G +    +  +
Sbjct: 302 CSHFTTIARPTIGNKKNQEIWGI 324

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 4/96 (4%)

Query: 398 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSRITSAGL 456
           C     D  +        +  ++LS N  +   TL  ++S  + L +L++   R++   +
Sbjct: 77  CPRSFMDQPLAEHFSPFRVQHMDLS-NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV 135

Query: 457 RHLKPLKNLRSLTLESC-KVTANDIKRLQSRDLPNL 491
             L    NL  L L  C   +   ++ L S     L
Sbjct: 136 NTLAKNSNLVRLNLSGCSGFSEFALQTLLSS-CSRL 170

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score =  110 bits (278), Expect = 5e-27
 Identities = 49/323 (15%), Positives = 99/323 (30%), Gaps = 50/323 (15%)

Query: 218 LSALGSLFYLNLNRCQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVHL-----K 267
            S    +  L+L+   L      +  +       S+  LNL  N +  +    L      
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 268 GLTNLESLNLDSCGIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHLSGL----- 317
              N+ SLNL    +  +    L          +  L+L      S              
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 318 TNLESINLSFTGISDGSLRKLAGL-----SSLKSLNLDARQITDTGLAALTSL-----TG 367
            ++ S+NL    +   S  +L  +     +++ SLNL    +     A L          
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 368 LTHLDLFGARITDSGAAYL-----RNFKNLRSLEICGGGLTDAGVKHIKDL----SSLTL 418
           +T LDL    +     A L         ++ SL +C   L    ++++K L      L  
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 419 LNLSQN--CNLTDKTL----ELISGLTGLVSLNVSNSRITSAGLRHL-----KPLKNLRS 467
           + L  +   N++ +           +  ++ ++ +   I  +    +     +       
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADV 317

Query: 468 LTLESCKVTANDIKRLQSRDLPN 490
            +L +  +      +    DL  
Sbjct: 318 PSLLNQCLIFAQKHQTNIEDLNI 340

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score =  102 bits (255), Expect = 6e-24
 Identities = 58/336 (17%), Positives = 110/336 (32%), Gaps = 57/336 (16%)

Query: 145 LKGLMKLESLNIKWCNCITDSDMKPLSGL-----TNLKSLQISCSKVTDSGIAYL-KGLQ 198
                 + SL++   N +       L         ++ SL +S + +       L + L 
Sbjct: 18  TSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 199 K----LTLLNLEGCPVTAACLDSLSAL-----GSLFYLNLNRCQLSDDGCEKFSKI---- 245
                +T LNL G  ++    D L         ++  L+L     S     +F +     
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 246 -GSLKVLNLGFNEITDECLVHL-KGL----TNLESLNLDSCGIGDEGLVNLTGL-----C 294
             S+  LNL  N++  +    L + L     N+ SLNL    +  +    L         
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA 196

Query: 295 NLKCLELSDTQVGSSGLRHLSGL-----TNLESINLSFTGISDGSLRKLAGL----SSLK 345
           ++  L+LS   +G      L+ +      ++ S+NL    +   SL  L  L      L+
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 346 SLNLDARQITDTG-------LAALTSLTGLTHLDLFGARITDSGAAYLRNF-----KNLR 393
           ++ LD   + +          AA  ++  +  +D  G  I  S +  + N          
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKAD 316

Query: 394 SLEICGGGLTDAG-----VKHIKDLSSLTLLNLSQN 424
              +    L  A      ++ +     L     +  
Sbjct: 317 VPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCK 352

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 78.2 bits (193), Expect = 7e-16
 Identities = 44/304 (14%), Positives = 95/304 (31%), Gaps = 54/304 (17%)

Query: 51  SSLLSVDLSGSDVTDSGLIHL-----KDCSNLQSLDFNFCIQISDGGLEHL-----RGLS 100
             + S+DLS +++     + L        +++ SL+ +    +     + L        +
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPA 80

Query: 101 NLTSLSFRRNNAITAQGMKAFAGLI-----NLVKLDLERCTRIHGGLVNLKGLMK----- 150
           N+TSL+   N  ++ +        +      +  LDL             K         
Sbjct: 81  NVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 151 LESLNIKWCNCITDSDMKPLSGL-----TNLKSLQISCSKVTDSGIAYL-KGL----QKL 200
           + SLN+   N +       L  +      N+ SL +  + +     A L K L      +
Sbjct: 140 ITSLNL-RGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198

Query: 201 TLLNLEGCPVTAACLDSLSAL-----GSLFYLNLNRCQLSDDGCEKFSKIG----SLKVL 251
           T L+L    +       L+ +       +  LNL    L     E    +      L+ +
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 252 NLGFN---EITDECLVH----LKGLTNLESLNLDSCGIGDEGLVNLTGL-----CNLKCL 299
            L ++    ++ E           +  +  ++ +   I     + ++ L           
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVP 318

Query: 300 ELSD 303
            L +
Sbjct: 319 SLLN 322

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 33/269 (12%), Positives = 83/269 (30%), Gaps = 67/269 (24%)

Query: 44  DVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT 103
             +A+   ++  +DL  +D +              +L                   +++T
Sbjct: 102 KTLAAIPFTITVLDLGWNDFSSKSSSEF--KQAFSNLP------------------ASIT 141

Query: 104 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 163
           SL+ R N+ +  +       ++  +                      + SLN+   N + 
Sbjct: 142 SLNLRGND-LGIKSSDELIQILAAIPA-------------------NVNSLNL-RGNNLA 180

Query: 164 DSDMKPLSGL-----TNLKSLQISCSKVTDSGIAYL-KGLQ----KLTLLNLEGCPVTAA 213
             +   L+        ++ SL +S + +     A L          +  LNL    +   
Sbjct: 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240

Query: 214 CLDSLSALG----SLFYLNLNRCQLSDDGCEKFSKIGS-------LKVLNLGFNEITDEC 262
            L++L  L      L  + L+   + +   E+   +G+       + +++    EI    
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300

Query: 263 LVHL-----KGLTNLESLNLDSCGIGDEG 286
            + +     +     +  +L +  +    
Sbjct: 301 SIPISNLIRELSGKADVPSLLNQCLIFAQ 329

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 21/144 (14%)

Query: 360 AALTSLTGLTHLDLFGARITDSGAAYL-----RNFKNLRSLEICGGGLTDAGVKHIKDL- 413
              +   G+T LDL    +       L         ++ SL + G  L       +  + 
Sbjct: 16  EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75

Query: 414 ----SSLTLLNLSQNCNLTDKTLELISGL-----TGLVSLNVSNSRITSAGLRHL----- 459
               +++T LNLS    L+ K+ + +          +  L++  +  +S           
Sbjct: 76  AAIPANVTSLNLS-GNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134

Query: 460 KPLKNLRSLTLESCKVTANDIKRL 483
               ++ SL L    +       L
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDEL 158

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score =  106 bits (266), Expect = 7e-27
 Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 15/190 (7%)

Query: 192 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 251
           +  K      L       +T A ++SL+      Y+ L    ++D          ++K L
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLT------YITLANINVTD--LTGIEYAHNIKDL 71

Query: 252 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 311
            +     T+     + GL+NLE L +    +  + + NL+GL +L  L++S +    S L
Sbjct: 72  TINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 312 RHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 370
             ++ L  + SI+LS+   I+D  +  L  L  LKSLN+    + D     +     L  
Sbjct: 130 TKINTLPKVNSIDLSYNGAITD--IMPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQ 185

Query: 371 LDLFGARITD 380
           L  F   I  
Sbjct: 186 LYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score =  103 bits (258), Expect = 1e-25
 Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 10/167 (5%)

Query: 315 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 374
           + + +L  I L+   ++D  L  +    ++K L ++    T+     ++ L+ L  L + 
Sbjct: 41  AQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIM 96

Query: 375 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 434
           G  +T      L    +L  L+I      D+ +  I  L  +  ++LS N  +TD  +  
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD--IMP 154

Query: 435 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 481
           +  L  L SLN+    +     R ++    L  L   S  +     K
Sbjct: 155 LKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIG--GKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 95.8 bits (239), Expect = 4e-23
 Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 10/168 (5%)

Query: 44  DVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT 103
           ++  +Q +SL  + L+  +VTD  L  ++   N++ L  N     ++     + GLSNL 
Sbjct: 37  NITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNI-HATN--YNPISGLSNLE 91

Query: 104 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 163
            L     + +T+  +   +GL +L  LD+         L  +  L K+ S+++ +   IT
Sbjct: 92  RLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 164 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 211
             D+ PL  L  LKSL I    V D     ++   KL  L      + 
Sbjct: 151 --DIMPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 83.9 bits (208), Expect = 7e-19
 Identities = 41/210 (19%), Positives = 67/210 (31%), Gaps = 37/210 (17%)

Query: 52  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 111
           + L+  L  S   +   I     ++L  +       ++D  L  +    N+  L+   N 
Sbjct: 24  AYLNGLLGQSSTAN---ITEAQMNSLTYITLANI-NVTD--LTGIEYAHNIKDLTI-NNI 76

Query: 112 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 171
             T       +GL NL +L +                             +T   +  LS
Sbjct: 77  HAT--NYNPISGLSNLERLRIMG-------------------------KDVTSDKIPNLS 109

Query: 172 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 231
           GLT+L  L IS S   DS +  +  L K+  ++L         +  L  L  L  LN+  
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IMPLKTLPELKSLNIQF 168

Query: 232 CQLSDDGCEKFSKIGSLKVLNLGFNEITDE 261
             + D           L  L      I  +
Sbjct: 169 DGVHD--YRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.5 bits (176), Expect = 1e-14
 Identities = 26/138 (18%), Positives = 54/138 (39%), Gaps = 8/138 (5%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110
            ++  + ++    T+     +   SNL+ L       ++   + +L GL++LT L    +
Sbjct: 66  HNIKDLTINNIHATN--YNPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHS 122

Query: 111 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 170
                  +     L  +  +DL     I   ++ LK L +L+SLNI++   +   D + +
Sbjct: 123 A-HDDSILTKINTLPKVNSIDLSYNGAI-TDIMPLKTLPELKSLNIQFDG-VH--DYRGI 177

Query: 171 SGLTNLKSLQISCSKVTD 188
                L  L      +  
Sbjct: 178 EDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 7/106 (6%)

Query: 388 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 447
              +L  + +    +TD  +  I+   ++  L ++   + T+     ISGL+ L  L + 
Sbjct: 42  QMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNI-HATN--YNPISGLSNLERLRIM 96

Query: 448 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 493
              +TS  + +L  L +L  L +       + + ++    LP + S
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN--TLPKVNS 140

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  108 bits (272), Expect = 1e-26
 Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 17/237 (7%)

Query: 144 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 203
           +     +    N+K    +TD      + L ++  +  + S +    +  ++ L  +T L
Sbjct: 19  SDDAFAETIKDNLKK-KSVTD--AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKL 73

Query: 204 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 263
            L G  +T   +  L+ L +L +L L+  ++ D        +  LK L+L  N I+D  +
Sbjct: 74  FLNGNKLTD--IKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISD--I 127

Query: 264 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 323
             L  L  LESL L +  I D  +  L+ L  L  L L D Q+  S +  L+GLT L+++
Sbjct: 128 NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNL 183

Query: 324 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 380
            LS   ISD  LR LAGL +L  L L +++  +  +   ++L     +      +  
Sbjct: 184 YLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  102 bits (257), Expect = 1e-24
 Identities = 67/270 (24%), Positives = 113/270 (41%), Gaps = 20/270 (7%)

Query: 102 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 161
           L S +      I    + +       +K +L++ +      V    L  ++ +     + 
Sbjct: 3   LGSETITVPTPIKQ--IFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANN-SD 57

Query: 162 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 221
           I    ++ +  L N+  L ++ +K+TD  I  L  L+ L  L L+   V    L SL  L
Sbjct: 58  IKS--VQGIQYLPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVK--DLSSLKDL 111

Query: 222 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 281
             L  L+L    +SD        +  L+ L LG N+ITD  +  L  LT L++L+L+   
Sbjct: 112 KKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQ 167

Query: 282 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 341
           I D  +V L GL  L+ L LS   +  S LR L+GL NL+ + L      +  +   + L
Sbjct: 168 ISD--IVPLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNL 223

Query: 342 SSLKSL-NLDARQITDTGLAALTSLTGLTH 370
               ++ N D   +T   ++          
Sbjct: 224 VVPNTVKNTDGSLVTPEIISDDGDYEKPNV 253

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  100 bits (252), Expect = 4e-24
 Identities = 52/232 (22%), Positives = 94/232 (40%), Gaps = 23/232 (9%)

Query: 248 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 307
               NL    +TD   V    L +++ +  ++  I    +  +  L N+  L L+  ++ 
Sbjct: 26  TIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLT 81

Query: 308 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 367
              ++ L+ L NL  + L    + D  L  L  L  LKSL+L+   I+D  +  L  L  
Sbjct: 82  D--IKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISD--INGLVHLPQ 135

Query: 368 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 427
           L  L L   +ITD     L     L +L +    ++D  +  +  L+ L  L LS+N ++
Sbjct: 136 LESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKN-HI 190

Query: 428 TDKTLELISGLTG---LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 476
           +D     +  L G   L  L + +    +  + H   L    ++      + 
Sbjct: 191 SD-----LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 96.3 bits (240), Expect = 2e-22
 Identities = 57/261 (21%), Positives = 105/261 (40%), Gaps = 21/261 (8%)

Query: 71  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 130
               +     +      ++D        L+++  +    ++ I +  ++    L N+ KL
Sbjct: 20  DDAFAETIKDNLKKK-SVTD--AVTQNELNSIDQIIANNSD-IKS--VQGIQYLPNVTKL 73

Query: 131 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 190
            L    ++   +  L  L  L  L +   N + D  +  L  L  LKSL +  + ++D  
Sbjct: 74  FLNG-NKLTD-IKPLANLKNLGWLFLD-ENKVKD--LSSLKDLKKLKSLSLEHNGISD-- 126

Query: 191 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 250
           I  L  L +L  L L    +T   +  LS L  L  L+L   Q+SD      + +  L+ 
Sbjct: 127 INGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQN 182

Query: 251 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 310
           L L  N I+D  L  L GL NL+ L L S    ++ + + + L     ++ +D  + +  
Sbjct: 183 LYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT-- 238

Query: 311 LRHLSGLTNLESINLSFTGIS 331
              +S   + E  N+ +    
Sbjct: 239 PEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 90.1 bits (224), Expect = 3e-20
 Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 45/236 (19%)

Query: 256 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 315
             I    +            NL    + D   V    L ++  +  +++ + S  ++ + 
Sbjct: 12  TPIKQ--IFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS--VQGIQ 65

Query: 316 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 375
            L N+  + L+   ++D  ++ LA L +L  L LD  ++ D  L++L  L  L  L L  
Sbjct: 66  YLPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEH 121

Query: 376 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 435
             I+D                          +  +  L  L  L L  N  +TD  + ++
Sbjct: 122 NGISD--------------------------INGLVHLPQLESLYLGNN-KITD--ITVL 152

Query: 436 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 491
           S LT L +L++ +++I+   +  L  L  L++L L    ++  D++ L    L NL
Sbjct: 153 SRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS--DLRALA--GLKNL 202

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 54/181 (29%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110
            +L  + L  + V D  L  LKD   L+SL       ISD  +  L  L  L SL    N
Sbjct: 90  KNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHN-GISD--INGLVHLPQLESLYLGNN 144

Query: 111 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 170
             IT   +   + L  L  L LE   +I   +V L GL KL++L +   N I+D  ++ L
Sbjct: 145 K-IT--DITVLSRLTKLDTLSLED-NQISD-IVPLAGLTKLQNLYLS-KNHISD--LRAL 196

Query: 171 SGLTNLKSLQISCSKVTDSGIAYLKGLQKL-TLLNLEGCPVTAACLDSLSALGSLFYLNL 229
           +GL NL  L++   +  +  I +   L    T+ N +G  VT    + +S  G     N+
Sbjct: 197 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT---PEIISDDGDYEKPNV 253

Query: 230 N 230
            
Sbjct: 254 K 254

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  107 bits (269), Expect = 4e-25
 Identities = 80/451 (17%), Positives = 159/451 (35%), Gaps = 32/451 (7%)

Query: 51  SSLLSVDLSGSDVTD--SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 108
            +    D      T   SGL      + ++SLD +F  +I+  G   LR  +NL  L  +
Sbjct: 5   DASGVCDGRSRSFTSIPSGL-----TAAMKSLDLSFN-KITYIGHGDLRACANLQVLILK 58

Query: 109 RNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSD 166
            +  I      AF  L +L  LDL     + +         L  L+ LN+      T   
Sbjct: 59  SSR-INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW--FGPLSSLKYLNLMGNPYQTLGV 115

Query: 167 MKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 225
                 LTNL++L+I      ++       GL  L  L ++   +      SL ++  + 
Sbjct: 116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175

Query: 226 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 285
           +L L+  + +         + S++ L L    +       L        +   +      
Sbjct: 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235

Query: 286 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 345
              +   L  L    L  ++V               S +   + +            +++
Sbjct: 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELG------KVETVTIR 289

Query: 346 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 405
            L++    +        + L  +  + +  +++     ++ ++ K+L  L++    + + 
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 406 GVKH---IKDLSSLTLLNLSQNCNLTD--KTLELISGLTGLVSLNVSNSRITSAGLRHLK 460
            +K+        SL  L LSQN +L    KT E++  L  L SL++S +          +
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNTFHPMP-DSCQ 407

Query: 461 PLKNLRSLTLESCKVTANDIKRLQSRDLPNL 491
             + +R L L S       I+ +++     L
Sbjct: 408 WPEKMRFLNLSS-----TGIRVVKTCIPQTL 433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  100 bits (250), Expect = 1e-22
 Identities = 71/447 (15%), Positives = 157/447 (35%), Gaps = 39/447 (8%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110
            SL  +DLS + ++          S+L+ L+       + G       L+NL +L     
Sbjct: 74  GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133

Query: 111 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 168
              +      FAGL +L +L+++             LK +  +  L +            
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS--LKSIRDIHHLTLHLSE-SAFLLEI 190

Query: 169 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 228
               L++++ L++  + +     + L   +  + +       +    +S + L  L    
Sbjct: 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250

Query: 229 LNRCQLSDDGC-------------EKFSKIGSLKVLNLGFNEITDECLVHL-----KGLT 270
           L   ++  D C             +  S++G ++ + +    I    L +        L 
Sbjct: 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE 310

Query: 271 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH---LSGLTNLESINLSF 327
            ++ + +++  +          L +L+ L+LS+  +    L++        +L+++ LS 
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 328 TGISD--GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 385
             +     +   L  L +L SL++           +      +  L+L    I       
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCI 429

Query: 386 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 445
               + L  L++    L    +     L  L  L +S+N  L   TL   S    L+ + 
Sbjct: 430 ---PQTLEVLDVSNNNLDSFSL----FLPRLQELYISRN-KLK--TLPDASLFPVLLVMK 479

Query: 446 VSNSRITSAGLRHLKPLKNLRSLTLES 472
           +S +++ S        L +L+ + L +
Sbjct: 480 ISRNQLKSVPDGIFDRLTSLQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.9 bits (218), Expect = 1e-18
 Identities = 63/426 (14%), Positives = 132/426 (30%), Gaps = 68/426 (15%)

Query: 51  SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 107
           SSL  ++L G     +  + L    + +NLQ+L        S+       GL++L  L  
Sbjct: 98  SSLKYLNLMGNPYQTLGVTSLFP--NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155

Query: 108 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 167
           +  + +     ++   + ++  L L          +    L  +  L ++    +     
Sbjct: 156 KALS-LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR-DTNLARFQF 213

Query: 168 KPLSGLTNLKSLQISC----------------------------------------SKVT 187
            PL        ++                                           +   
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273

Query: 188 DSGIAYLKGLQKLTL--LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 245
              ++ L  ++ +T+  L++    +        S L  +  + +   ++    C     +
Sbjct: 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333

Query: 246 GSLKVLNLGFNEITDECLVH---LKGLTNLESLNLDSCGIGDEGLVN--LTGLCNLKCLE 300
            SL+ L+L  N + +E L +        +L++L L    +         L  L NL  L+
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393

Query: 301 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 360
           +S                 +  +NLS TGI    ++      +L+ L++    +      
Sbjct: 394 ISRNTFHPMP-DSCQWPEKMRFLNLSSTGIR--VVKT-CIPQTLEVLDVSNNNLDSFS-- 447

Query: 361 ALTSLTGLTHLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 418
               L  L  L +   ++      +     F  L  ++I    L          L+SL  
Sbjct: 448 --LFLPRLQELYISRNKLKTLPDAS----LFPVLLVMKISRNQLKSVPDGIFDRLTSLQK 501

Query: 419 LNLSQN 424
           + L  N
Sbjct: 502 IWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.8 bits (197), Expect = 4e-16
 Identities = 49/290 (16%), Positives = 100/290 (34%), Gaps = 20/290 (6%)

Query: 223 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 282
           ++  L+L+  +++  G        +L+VL L  + I          L +LE L+L    +
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 283 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLS----FTGISDGSLRK 337
                     L +LK L L      + G+  L   LTNL+++ +     F+ I       
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA- 145

Query: 338 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 397
             GL+SL  L + A  + +    +L S+  + HL L  +        +     ++R LE+
Sbjct: 146 --GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 398 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT---------DKTLELISGLTGLVSLNVSN 448
               L       +      + +                   K L  I  L+ +   + + 
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263

Query: 449 SRITS---AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 495
           + +     +    +  L  + ++T+    +    +    S     L   +
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  107 bits (268), Expect = 6e-25
 Identities = 97/463 (20%), Positives = 172/463 (37%), Gaps = 39/463 (8%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110
           S L ++ L+G+ +    L      S+LQ L       ++      +  L  L  L+   N
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN 134

Query: 111 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKW---CNCITDS 165
              + +  + F+ L NL  LDL       I+    +L+ L ++  LN+      N +   
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT--DLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 166 DMKPLSGLTNLKSLQISCSK----VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 221
                  +  L  L +  +     V  + I  L GL+   L+  E            SAL
Sbjct: 193 QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 222 GSLFYLNLNRCQLS------DDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLES 274
             L  L +   +L+      DD  + F+ + ++   +L    I   +   +  G  +LE 
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL 311

Query: 275 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 334
           +N          L       +LK L  +  + G+        L +LE ++LS  G+S   
Sbjct: 312 VNCKFGQFPTLKLK------SLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 335 LRKLA--GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY-LRNFKN 391
               +  G +SLK L+L    +     +    L  L HLD   + +          + +N
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 392 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSR 450
           L  L+I       A       LSSL +L ++ N +  +  L ++ + L  L  L++S  +
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 451 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 493
           +          L +L+ L + S     N +K +       L S
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMAS-----NQLKSVPDGIFDRLTS 519

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  103 bits (259), Expect = 8e-24
 Identities = 91/481 (18%), Positives = 154/481 (32%), Gaps = 75/481 (15%)

Query: 75  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 134
            + ++LD +F   +   G         L  L   R   I      A+  L +L  L L  
Sbjct: 28  FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTG 85

Query: 135 C--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI- 191
                +  G     GL  L+ L     N +   +  P+  L  LK L ++ + +    + 
Sbjct: 86  NPIQSLALGA--FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 192 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL----FYLNLNRCQLSDDGCEKFSKIGS 247
            Y   L  L  L+L    + +     L  L  +      L+L+   ++      F +I  
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-R 201

Query: 248 LKVLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVN------LTGLCNLKCLE 300
           L  L L  N  +   +   ++GL  LE   L      +EG +       L GLCNL   E
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 301 LSDTQVGSSGLR----------------------------HLSGLTNLESINLSFTGISD 332
                +                                  +  G  +LE +N  F     
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321

Query: 333 GSLRKL----------------AGLSSLKSLNLDARQITDTGL--AALTSLTGLTHLDLF 374
             L+ L                  L SL+ L+L    ++  G    +    T L +LDL 
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 375 GARITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTDKTLE 433
              +    +      + L  L+     L   +       L +L  L++S   +       
Sbjct: 382 FNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNG 439

Query: 434 LISGLTGLVSLNVSNSRITSAGLRH-LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 492
           + +GL+ L  L ++ +      L      L+NL  L L         +++L      +L 
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ-----CQLEQLSPTAFNSLS 494

Query: 493 S 493
           S
Sbjct: 495 S 495

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 89.4 bits (222), Expect = 4e-19
 Identities = 74/372 (19%), Positives = 123/372 (33%), Gaps = 26/372 (6%)

Query: 66  SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 125
             L  +   +    L  N    I  G  + +     L  L+ R N            GL 
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI----RLHKLTLRNNFDSLNVMKTCIQGLA 225

Query: 126 NLVKLDLE--------RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 177
            L    L            +     +     + +E   + + +   D  +   + LTN+ 
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 178 SLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 236
           S  +    +      +Y  G Q L L+N +        L SL        L     +  +
Sbjct: 286 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK------RLTFTSNKGGN 339

Query: 237 DGCEKFSKIGSLKVLNLGFNEIT--DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 294
                   + SL+ L+L  N ++    C     G T+L+ L+L   G+      N  GL 
Sbjct: 340 AFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLE 396

Query: 295 NLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 353
            L+ L+   + +   S       L NL  +++S T           GLSSL+ L +    
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 354 ITDTGLA-ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 412
             +  L    T L  LT LDL   ++         +  +L+ L +    L          
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516

Query: 413 LSSLTLLNLSQN 424
           L+SL  + L  N
Sbjct: 517 LTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.4 bits (165), Expect = 4e-12
 Identities = 56/281 (19%), Positives = 103/281 (36%), Gaps = 18/281 (6%)

Query: 52  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 111
           ++    L+  D     +I L +C  L ++     + ++   ++          L      
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNC--LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 315

Query: 112 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 171
                       L +L +L         G   +   L  LE L++   N ++       S
Sbjct: 316 FGQFP----TLKLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLS-RNGLSFKGCCSQS 368

Query: 172 --GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA---LGSLFY 226
             G T+LK L +S + V     +   GL++L  L+ +   +    +   S    L +L Y
Sbjct: 369 DFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQ--MSEFSVFLSLRNLIY 425

Query: 227 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGLTNLESLNLDSCGIGDE 285
           L+++           F+ + SL+VL +  N   +  L      L NL  L+L  C +   
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 286 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 326
                  L +L+ L ++  Q+ S        LT+L+ I L 
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score =  102 bits (255), Expect = 7e-24
 Identities = 61/372 (16%), Positives = 118/372 (31%), Gaps = 48/372 (12%)

Query: 102 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 161
           L  L    N A+ AQ       + NL  L+  +  +   G +  + L   E L+  + + 
Sbjct: 3   LVGLLSAHNRAVLAQ---LGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHY 59

Query: 162 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQ----KLTLLNLEGCPVTAACLD 216
              +       L++L+ L ++  ++T      +   L      L  +NL  C +  A L 
Sbjct: 60  EFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLR 119

Query: 217 SL-SALGSLFYLNLNRCQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVH----L 266
           +L         L L    L  + C+    +       +  L L  N +T   +      L
Sbjct: 120 TLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179

Query: 267 KGLTNLESLNLDSCGIGDEGLVN----LTGLCNLKCLELSDTQVGSSGLRHLSGL----T 318
            G T++  L+L   G+GDEGL      L     L+ L ++    G +    L+       
Sbjct: 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHP 239

Query: 319 NLESINLSFTGISDGSLRKLA-------GLSSLKSLNLDARQITDTGLAALTS-LTGLTH 370
           +LE ++L F  +S    + L        G + +     +   +++     L+     L  
Sbjct: 240 SLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNS 299

Query: 371 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCN 426
            D             ++    L   ++                 +    +  L      +
Sbjct: 300 WDRAR----------VQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

Query: 427 LTDKTLELISGL 438
            +          
Sbjct: 350 GSPSGSWSHPQF 361

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 98.2 bits (245), Expect = 1e-22
 Identities = 65/357 (18%), Positives = 118/357 (33%), Gaps = 54/357 (15%)

Query: 167 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 226
             P+  L  L++ Q    K+   G   L   + L  L             S   L SL  
Sbjct: 19  GCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYE--FQNQRFSAEVLSSLRQ 76

Query: 227 LNLNRCQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSC 280
           LNL   +++   C   + +      +L  +NL   ++    L  L         L L   
Sbjct: 77  LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136

Query: 281 GIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHLS-GL---TNLESINLSFTGIS 331
            +G E   +L  L     C +  L LS+  + ++G+  L  GL   T++  ++L  TG+ 
Sbjct: 137 SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196

Query: 332 DGSLRKLAGL----SSLKSLNLDARQITDTGLAALTSL----TGLTHLDLFGARITDSGA 383
           D  L  LA        L+ LN+      DT   AL         L  L L+   ++  G 
Sbjct: 197 DEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGR 256

Query: 384 AYL-------RNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCNLTDKTL 432
             L            +      G  +++     +    ++L+S     + ++  L     
Sbjct: 257 QVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELL---- 312

Query: 433 ELISGLTGLVSLNVSNSRITSAGL----RHLKPLKNLRSLTLESCKVTANDIKRLQS 485
                       ++ +SR  +       + L+    +R+L  +     +        
Sbjct: 313 ----------LRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHP 359

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 55/351 (15%), Positives = 105/351 (29%), Gaps = 82/351 (23%)

Query: 51  SSLLSVDLSGSDVTDSGLIH----LKDCS-NLQSLDFNFCIQISDGGLEHL-RGLSNLTS 104
           SSL  ++L+G  +T          L      L  ++   C Q+   GL  L         
Sbjct: 72  SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARK 130

Query: 105 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 164
           L  + N+ +  +  K    L     L  ++C               + +L +   N +T 
Sbjct: 131 LGLQLNS-LGPEACKDLRDL-----LLHDQCQ--------------ITTLRL-SNNPLTA 169

Query: 165 SDMKPLS-GL---TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 220
           + +  L  GL   T++  L +  + + D G+  L                       L  
Sbjct: 170 AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL--------------------AAQLDR 209

Query: 221 LGSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITD-------ECLVHLKGL 269
              L  LN+      D      ++      SL++L+L FNE++        +     +G 
Sbjct: 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGG 269

Query: 270 TNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 328
             +     +   + +   V L+    NL   + +  Q              L   +L  +
Sbjct: 270 ARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRH----------LELLLRDLEDS 319

Query: 329 GISDGSLRKLAGL----SSLKSLNLDARQITDTG----LAALTSLTGLTHL 371
             +  +  + A L      +++L                       G  H 
Sbjct: 320 RGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHPQFEKGAGHHHH 370

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 62.4 bits (152), Expect = 9e-11
 Identities = 36/265 (13%), Positives = 80/265 (30%), Gaps = 56/265 (21%)

Query: 46  IASQGSSLLSVDLSGSDVTDSGLIHL-----KDCSNLQSLDFNFCIQISDGGLEHL-RGL 99
           +         + L  + +       L      D   + +L  +    ++  G+  L  GL
Sbjct: 121 LLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGL 179

Query: 100 S---NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 156
           +   ++T LS   +  +  +G++  A                      L    +L+ LN+
Sbjct: 180 AGNTSVTHLSL-LHTGLGDEGLELLAAQ--------------------LDRNRQLQELNV 218

Query: 157 KWCNCITDSDMKPLSGL----TNLKSLQISCSKVTDSGIAYL-------KGLQKLTLLNL 205
              N   D+    L+       +L+ L +  ++++  G   L       +G  ++ +   
Sbjct: 219 -AYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLT 277

Query: 206 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 265
           EG  V+      LS +              D    +  +   L + +L  +         
Sbjct: 278 EGTAVSEYWSVILSEV-------QRNLNSWDRA--RVQRHLELLLRDLEDSRGATLNPWR 328

Query: 266 ----LKGLTNLESLNLDSCGIGDEG 286
               L+    + +L       G   
Sbjct: 329 KAQLLRVEGEVRALLEQLGSSGSPS 353

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  100 bits (249), Expect = 1e-22
 Identities = 70/410 (17%), Positives = 139/410 (33%), Gaps = 39/410 (9%)

Query: 100 SNLTSLSFRRNNAITAQGMKAFAG-----LINLVKLDLERC--TRIHGGLVNLKGLMKLE 152
           SNL       +  I  Q    + G     L N   +  +     ++   L  L    ++E
Sbjct: 21  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL--LDSFRQVE 78

Query: 153 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 212
            LN+     I + D    +    ++ L +  + +        + +  LT+L LE   +++
Sbjct: 79  LLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137

Query: 213 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 272
                      L  L+++   L     + F    SL+ L L  N +T    V L  + +L
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSL 194

Query: 273 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG--LTNLESINLSFTGI 330
              N+    +       L     ++ L+ S        +  + G     L  + L    +
Sbjct: 195 FHANVSYNLLS-----TLAIPIAVEELDASHNS-----INVVRGPVNVELTILKLQHNNL 244

Query: 331 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 390
           +D     L     L  ++L   ++          +  L  L +   R+  +   Y +   
Sbjct: 245 TD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP 301

Query: 391 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 450
            L+ L++    L     ++      L  L L  N ++   TL+ +S    L +L +S++ 
Sbjct: 302 TLKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHN-SIV--TLK-LSTHHTLKNLTLSHND 356

Query: 451 ITSAGLRHLKPLKNLRSLTLE----SCKVTANDIKRLQSRDLPNLVSFRP 496
                LR L   +N+    ++     CK+       L  ++       R 
Sbjct: 357 WDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRL 404

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 86.5 bits (214), Expect = 4e-18
 Identities = 59/438 (13%), Positives = 133/438 (30%), Gaps = 61/438 (13%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110
             +  ++L+   + +           +Q L   F   I        + +  LT L     
Sbjct: 75  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVL-ER 132

Query: 111 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 170
           N +++     F     L  L +                           N +   +    
Sbjct: 133 NDLSSLPRGIFHNTPKLTTLSMSN-------------------------NNLERIEDDTF 167

Query: 171 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 230
              T+L++LQ+S +++T   ++ +  L    +            L +L+   ++  L+ +
Sbjct: 168 QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL--------LSTLAIPIAVEELDAS 219

Query: 231 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 290
              ++            L +L L  N +TD     L     L  ++L    +        
Sbjct: 220 HNSINVVRGPVNV---ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 274

Query: 291 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 350
             +  L+ L +S+ ++  +   +   +  L+ ++LS   +     R       L++L LD
Sbjct: 275 VKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLLHVE-RNQPQFDRLENLYLD 332

Query: 351 ARQITDTGLAALTSLTGLTHLDLFGARIT-DSGAAYLRNFKNLRSLEI------------ 397
              I       L++   L +L L       +S  A  RN       +             
Sbjct: 333 HNSIVT---LKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEH 389

Query: 398 ---CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 454
              C         + ++ ++  +++   Q         + I+ +  L         +   
Sbjct: 390 GLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQ 449

Query: 455 GLRHLKPLKNLRSLTLES 472
           G   L+   N     ++ 
Sbjct: 450 GNEQLEAEVNELRAEVQQ 467

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 95.5 bits (238), Expect = 2e-22
 Identities = 44/218 (20%), Positives = 87/218 (39%), Gaps = 16/218 (7%)

Query: 165 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 224
           + + P  GL N     +    VTD  +   K L  +   N +   + +  L  +    +L
Sbjct: 10  NQVFPDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNL 65

Query: 225 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 284
             L+L+  Q+SD        +  L+ L++  N + +  L  +     L  L LD+  + D
Sbjct: 66  KELHLSHNQISD--LSPLKDLTKLEELSVNRNRLKN--LNGIPSA-CLSRLFLDNNELRD 120

Query: 285 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 344
               +L  L NL+ L + + ++    +  L  L+ LE ++L    I++     L  L  +
Sbjct: 121 --TDSLIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKV 174

Query: 345 KSLNLDARQITDTGLAALTSLTGLTHL-DLFGARITDS 381
             ++L  ++  +  +     L     + D  G  I+  
Sbjct: 175 NWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY 212

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 92.0 bits (229), Expect = 3e-21
 Identities = 49/237 (20%), Positives = 89/237 (37%), Gaps = 42/237 (17%)

Query: 256 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 315
             I    +    GL N    NL    + D  LV+   L  ++     ++ + S  L  + 
Sbjct: 7   TPINQ--VFPDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQS--LAGMQ 60

Query: 316 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 375
             TNL+ ++LS   ISD  L  L  L+ L+ L+++  ++ +  L  + S   L+ L L  
Sbjct: 61  FFTNLKELHLSHNQISD--LSPLKDLTKLEELSVNRNRLKN--LNGIPSAC-LSRLFLDN 115

Query: 376 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 435
             + D                             +  L +L +L++  N  L    + ++
Sbjct: 116 NELRD--------------------------TDSLIHLKNLEILSIRNN-KLKS--IVML 146

Query: 436 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 492
             L+ L  L++  + IT+     L  LK +  + L   K     +K      + N V
Sbjct: 147 GFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 76.2 bits (188), Expect = 9e-16
 Identities = 38/231 (16%), Positives = 90/231 (38%), Gaps = 19/231 (8%)

Query: 68  LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 127
           +      +N    +      ++D  L   + LS + + +   +N  +   +       NL
Sbjct: 12  VFPDPGLANAVKQNLGKQ-SVTD--LVSQKELSGVQNFNGDNSNIQS---LAGMQFFTNL 65

Query: 128 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 187
            +L L    +I   L  LK L KLE L++   N + +  +  +     L  L +  +++ 
Sbjct: 66  KELHLSHN-QISD-LSPLKDLTKLEELSVNR-NRLKN--LNGIPSA-CLSRLFLDNNELR 119

Query: 188 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 247
           D     L  L+ L +L++    + +  +  L  L  L  L+L+  ++++      +++  
Sbjct: 120 D--TDSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITNT--GGLTRLKK 173

Query: 248 LKVLNLGFNEITDECLVHLKGLTNLESL-NLDSCGIGDEGLVNLTGLCNLK 297
           +  ++L   +  +E + +   L    ++ + D   I    + N     +  
Sbjct: 174 VNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGC 224

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 45/230 (19%), Positives = 84/230 (36%), Gaps = 47/230 (20%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110
           S + + +   S++    L  ++  +NL+ L  +   QISD  L  L+ L+ L  LS  RN
Sbjct: 41  SGVQNFNGDNSNIQS--LAGMQFFTNLKELHLSHN-QISD--LSPLKDLTKLEELSVNRN 95

Query: 111 --------------------NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 150
                               N +      +   L NL  L +    ++   +V L  L K
Sbjct: 96  RLKNLNGIPSACLSRLFLDNNELR--DTDSLIHLKNLEILSIRNN-KLKS-IVMLGFLSK 151

Query: 151 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL-TLLNLEGCP 209
           LE L++   N IT+     L+ L  +  + ++  K  +  + Y   L    T+ + +G  
Sbjct: 152 LEVLDL-HGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

Query: 210 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 259
           ++      +S  GS     +            +        ++  F+E  
Sbjct: 209 IS---PYYISNGGSYVDGCV-----------LWELPVYTDEVSYKFSEYI 244

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 97.4 bits (243), Expect = 4e-22
 Identities = 57/350 (16%), Positives = 108/350 (30%), Gaps = 25/350 (7%)

Query: 77  LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC- 135
              +  +   Q    G E +  L+N   ++F+ +  +             +  L+L    
Sbjct: 23  FYDVHIDMQTQDVYFGFEDIT-LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ 80

Query: 136 -TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 194
              I            ++ L +   N I          +  L  L +  + ++       
Sbjct: 81  IEEIDTYA--FAYAHTIQKLYM-GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 137

Query: 195 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 254
               KLT L++    +     D+  A  SL  L L+  +L+       S I SL   N+ 
Sbjct: 138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVS 194

Query: 255 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 314
           +N ++      L     +E L+     I     V       L  L+L    +  +    L
Sbjct: 195 YNLLST-----LAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNLTDTAW--L 244

Query: 315 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 374
                L  ++LS+  +          +  L+ L +   ++          +  L  LDL 
Sbjct: 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLS 303

Query: 375 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 424
              +          F  L +L +    +       +    +L  L LS N
Sbjct: 304 HNHLLHVERN-QPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.0 bits (177), Expect = 8e-14
 Identities = 35/226 (15%), Positives = 74/226 (32%), Gaps = 18/226 (7%)

Query: 269 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 328
           L N + +   +  +       L     ++ L L+D Q+        +    ++ + + F 
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

Query: 329 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 388
            I          +  L  L L+   ++        +   LT L +    +        + 
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163

Query: 389 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 448
             +L++L++    LT      +  + SL   N+S N       L  ++    +  L+ S+
Sbjct: 164 TTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL------LSTLAIPIAVEELDASH 214

Query: 449 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNLVS 493
           + I             L  L L+      N++       + P LV 
Sbjct: 215 NSINVV---RGPVNVELTILKLQH-----NNLTDTAWLLNYPGLVE 252

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 27/180 (15%), Positives = 64/180 (35%), Gaps = 6/180 (3%)

Query: 314 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 373
           L        +++           +   L++ K +      +     A L S   +  L+L
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76

Query: 374 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 433
              +I +           ++ L +    +        +++  LT+L L +N +L+     
Sbjct: 77  NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRG 135

Query: 434 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 493
           +      L +L++SN+ +        +   +L++L L S     N +  +    +P+L  
Sbjct: 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-----NRLTHVDLSLIPSLFH 190

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 94.4 bits (235), Expect = 3e-21
 Identities = 47/330 (14%), Positives = 95/330 (28%), Gaps = 66/330 (20%)

Query: 52  SLLSVDLSGSDVTDSGLIH----LKDCSNLQSLDFNFCIQISDGGLEH----LRGLSNLT 103
           S+    L    +T          L +  +++ +  +    I           +    +L 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLE 63

Query: 104 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 163
              F  +        +    L  L++               L    KL ++ +   N   
Sbjct: 64  IAEFS-DIFTGRVKDEIPEALRLLLQA--------------LLKCPKLHTVRL-SDNAFG 107

Query: 164 DSDMKPLSGL----TNLKSLQISCSKVTDSGIAYL-------------KGLQKLTLLNLE 206
            +  +PL       T L+ L +  + +     A +             K    L  +   
Sbjct: 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167

Query: 207 GCPVTAACL----DSLSALGSLFYLNLNRCQLSDDGCEK-----FSKIGSLKVLNLGFNE 257
              +    +     +  +   L  + + +  +  +G E       +    LKVL+L  N 
Sbjct: 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227

Query: 258 ITDECLVH----LKGLTNLESLNLDSCGIGDEGLVNL------TGLCNLKCLELSDTQVG 307
            T          LK   NL  L L+ C +   G   +           L+ L L   ++ 
Sbjct: 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

Query: 308 SSGLRHL-----SGLTNLESINLSFTGISD 332
              +R L       + +L  + L+    S+
Sbjct: 288 LDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 93.6 bits (233), Expect = 5e-21
 Identities = 52/269 (19%), Positives = 86/269 (31%), Gaps = 53/269 (19%)

Query: 247 SLKVLNLGFNEITDECLVH----LKGLTNLESLNLDSCGIGDEGLVN----LTGLCNLKC 298
           S++  +L  + IT E        L    +++ + L    IG E        +    +L+ 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 299 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 358
            E SD   G         L  L              L+ L     L ++ L       T 
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLL--------------LQALLKCPKLHTVRLSDNAFGPTA 110

Query: 359 LAALTSL----TGLTHLDLFGARITDSGAAYL-------------RNFKNLRSLEICGGG 401
              L       T L HL L    +     A +             +N   LRS+      
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170

Query: 402 LTDAGVKHI----KDLSSLTLLNLSQNCNLTDKTL-----ELISGLTGLVSLNVSNSRIT 452
           L +  +K      +    L  + + QN  +  + +     E ++    L  L++ ++  T
Sbjct: 171 LENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229

Query: 453 SAGLRH----LKPLKNLRSLTLESCKVTA 477
             G       LK   NLR L L  C ++A
Sbjct: 230 HLGSSALAIALKSWPNLRELGLNDCLLSA 258

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 78.2 bits (193), Expect = 7e-16
 Identities = 44/269 (16%), Positives = 78/269 (28%), Gaps = 76/269 (28%)

Query: 51  SSLLSVDLSGSDVTDSGLIH----LKDCSNLQSLDFNFCIQISDGGLEHL---------- 96
             L +V LS +    +        L   + L+ L  +    +       +          
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVN 152

Query: 97  ---RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 153
              +    L S+   RN  +    MK +A                       +    L +
Sbjct: 153 KKAKNAPPLRSIICGRNR-LENGSMKEWAKT--------------------FQSHRLLHT 191

Query: 154 LNIKWCNCITDSDMKP-----LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 208
           + +   N I    ++      L+    LK L +  +  T  G + L              
Sbjct: 192 VKM-VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA------------- 237

Query: 209 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI------GSLKVLNLGFNEITDEC 262
                   +L +  +L  L LN C LS  G               L+ L L +NEI  + 
Sbjct: 238 -------IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290

Query: 263 LVHL-----KGLTNLESLNLDSCGIGDEG 286
           +  L     + + +L  L L+     +E 
Sbjct: 291 VRTLKTVIDEKMPDLLFLELNGNRFSEED 319

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 95.7 bits (238), Expect = 5e-21
 Identities = 63/459 (13%), Positives = 138/459 (30%), Gaps = 60/459 (13%)

Query: 69  IHLKDCSNLQSLD---FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 125
           + L +   +  L    F    ++ D     +  L+ L  LSF  ++   +  +     L 
Sbjct: 317 VDLDNNGRVTGLSLAGFGAKGRVPD----AIGQLTELKVLSFGTHSETVSGRLFGDEELT 372

Query: 126 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--NLKSLQISC 183
             +  + +   R+H   + L    +L   ++       + +MKP+   +  +LK  QI  
Sbjct: 373 PDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN 432

Query: 184 SKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACL-------------------DSLSALGS 223
                + I   ++ L KL ++     P T   +                    S S L  
Sbjct: 433 LTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD 492

Query: 224 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH---------LKGLTNLES 274
           L  + L  C       +    +  L+ LN+  N       +                ++ 
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 275 LNLDSC---GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 331
             +              +L  +  L  L+    +V    L        L  + L +  I 
Sbjct: 553 FYMGYNNLEEFPASA--SLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE 608

Query: 332 DGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITD-----SGAAY 385
           +      A    ++ L     ++     +    S+  +  +D    +I       S +  
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668

Query: 386 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC------NLTDKTLELISGLT 439
                N  ++ +    +     +     S ++ + LS N       N             
Sbjct: 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY 728

Query: 440 GLVSLNVSNSRITS--AGLRHLKPLKNLRSLTLESCKVT 476
            L ++++  +++TS     R    L  L ++ +     +
Sbjct: 729 LLTTIDLRFNKLTSLSDDFRATT-LPYLSNMDVSYNCFS 766

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 93.4 bits (232), Expect = 3e-20
 Identities = 60/430 (13%), Positives = 143/430 (33%), Gaps = 45/430 (10%)

Query: 71  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 130
           ++  + LQ +        ++    +     +    +         +   +++ L +L  +
Sbjct: 444 IQRLTKLQIIY------FANSPFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDV 496

Query: 131 DLERCTRIH------GGLVNLKGLM----KLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 180
           +L  C  +         L  L+ L     +  S      +    +D         ++   
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD--EDTGPKIQIFY 554

Query: 181 ISCSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 239
           +  + + +    A L+ + KL LL+     V    L++      L  L L+  Q+ +   
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQIEEIPE 612

Query: 240 EKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGDE-----GLVNLTGL 293
           +  +    ++ L    N++     + + K +  + S++     IG E       ++    
Sbjct: 613 DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672

Query: 294 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRK----LAGLSSLKS 346
            N   + LS  ++        +  + + +I LS    T I + SL+           L +
Sbjct: 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732

Query: 347 LNLDARQITDTGLA-ALTSLTGLTHLDLFGARITD--SGAAYLRNFKNL---RSLEICGG 400
           ++L   ++T        T+L  L+++D+     +   +        K        +  G 
Sbjct: 733 IDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGN 792

Query: 401 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 460
            +       I    SL  L +  N ++     +L      L  L+++++   S  +  + 
Sbjct: 793 RILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKL---TPQLYILDIADNPNISIDVTSVC 848

Query: 461 PLKNLRSLTL 470
           P        L
Sbjct: 849 PYIEAGMYVL 858

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 82.6 bits (204), Expect = 9e-17
 Identities = 47/406 (11%), Positives = 118/406 (29%), Gaps = 34/406 (8%)

Query: 96  LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 155
           L     +T LS     A       A   L  L  L     +    G +     +  +   
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 156 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 215
            +            L     L    +    +       +K ++K + ++L+   +     
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR--NPEMKPIKKDSRISLKDTQIGNLTN 435

Query: 216 ------DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 269
                  ++  L  L  +       +       +     +  N  + +  +   +    L
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELSWSNL 490

Query: 270 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 329
            +L  + L +C    +    L  L  L+ L ++  +             +   +   +T 
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR-----------GISAAQLKADWTR 539

Query: 330 ISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRN 388
           ++D           ++   +    + +    A+L  +  L  LD    ++    A     
Sbjct: 540 LADD----EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA--FGT 593

Query: 389 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD-KTLELISGLTGLVSLNVS 447
              L  L++    + +           +  L  S N  L     +     +  + S++ S
Sbjct: 594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFS 652

Query: 448 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 493
            ++I S G      + + + +   +  ++ N+I++  +        
Sbjct: 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.5 bits (157), Expect = 5e-11
 Identities = 38/332 (11%), Positives = 98/332 (29%), Gaps = 34/332 (10%)

Query: 48  SQGSSLLSVDLSGSDVTDSGL-IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 106
             G  +    +  +++ +      L+    L  LD     ++    LE       LT L 
Sbjct: 545 DTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRH--LEAFGTNVKLTDLK 601

Query: 107 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCITD 164
              N  I        A    +  L      ++     + N K +  + S++  + N I  
Sbjct: 602 LDYNQ-IEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSY-NKIGS 658

Query: 165 -----SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA------- 212
                S         N  ++ +S +++             ++ + L    +T+       
Sbjct: 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLK 718

Query: 213 ACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITD--ECLVHLKGL 269
               +      L  ++L   +L+      + + +  L  +++ +N  +      ++   L
Sbjct: 719 PKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQL 778

Query: 270 TNL---ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL--SGLTNLESIN 324
                    + +   I  +    +T   +L  L++         +R +       L  ++
Sbjct: 779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-----IRKVDEKLTPQLYILD 833

Query: 325 LSFTGISDGSLRKLAGLSSLKSLNLDARQITD 356
           ++        +  +          L   +  D
Sbjct: 834 IADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 94.4 bits (235), Expect = 5e-21
 Identities = 69/380 (18%), Positives = 128/380 (33%), Gaps = 34/380 (8%)

Query: 75  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 134
           +++  +D +    I++        L +L  L   +           F GL +L+ L L+ 
Sbjct: 30  AHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 135 C--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTD-S 189
               ++  G     GL  LE L +     +  + +       LT+L+ L +  + +    
Sbjct: 89  NQFLQLETGA--FNGLANLEVLTLTQ-CNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

Query: 190 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF----------YLNLNRCQLSDDGC 239
             ++   +++  +L+L    V + C + L                   ++N   L  + C
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 240 EKFSKIGSLKVLNLGFNEIT---DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC-- 294
               K  S+  L+L  N       +        T ++SL L +         +       
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 295 ----------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 344
                      +K  +LS +++ +      S  T+LE + L+   I+        GL+ L
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325

Query: 345 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 404
             LNL    +         +L  L  LDL    I   G        NL+ L +    L  
Sbjct: 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385

Query: 405 AGVKHIKDLSSLTLLNLSQN 424
                   L+SL  + L  N
Sbjct: 386 VPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 78.6 bits (194), Expect = 7e-16
 Identities = 65/356 (18%), Positives = 118/356 (33%), Gaps = 41/356 (11%)

Query: 145 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 204
              L  L+ L ++              GL++L  L++  ++          GL  L +L 
Sbjct: 50  FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109

Query: 205 LEGCPVTAACL--DSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDE 261
           L  C +  A L  +    L SL  L L    +        F  +    VL+L FN++   
Sbjct: 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169

Query: 262 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 321
           C   L          L               L ++   ++++  +G     +    T++ 
Sbjct: 170 CEEDLLNFQGKHFTLLR--------------LSSITLQDMNEYWLGWEKCGNPFKNTSIT 215

Query: 322 SINLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 378
           +++LS   F              + ++SL L       +     T+     +    G   
Sbjct: 216 TLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH-TNFKDPDNFTFKGLEA 274

Query: 379 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 438
           +            +++ ++    +           + L  L L+QN  +         GL
Sbjct: 275 S-----------GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDDNAFWGL 322

Query: 439 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR---DLPNL 491
           T L+ LN+S + + S   R  + L  L  L L       N I+ L  +    LPNL
Sbjct: 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY-----NHIRALGDQSFLGLPNL 373

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 70.5 bits (173), Expect = 3e-13
 Identities = 56/291 (19%), Positives = 95/291 (32%), Gaps = 29/291 (9%)

Query: 217 SLSALGSLFYLNLNRCQLSDD-GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 275
           S S L  L +L + +           F  + SL +L L +N+          GL NLE L
Sbjct: 49  SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108

Query: 276 NLDSCGIGDEGLVN--LTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLS---FTG 329
            L  C +    L       L +L+ L L D  +           +     ++L+      
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168

Query: 330 ISDGSLRKLAG-------LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 382
           I +  L    G       LSS+   +++   +           T +T LDL G    +S 
Sbjct: 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228

Query: 383 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 442
           A    +      ++      +                +     N T K LE     +G+ 
Sbjct: 229 AKRFFDAIAGTKIQSLILSNSY---NMGSSFGHTNFKDPD---NFTFKGLEA----SGVK 278

Query: 443 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 493
           + ++S S+I +          +L  LTL       N+I ++       L  
Sbjct: 279 TCDLSKSKIFALLKSVFSHFTDLEQLTLAQ-----NEINKIDDNAFWGLTH 324

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 30/182 (16%), Positives = 60/182 (32%), Gaps = 5/182 (2%)

Query: 318 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLTGLTHLDLFGA 376
            ++  ++LS   I++ +    + L  L+ L ++ +             L+ L  L L   
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 377 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH--IKDLSSLTLLNLSQNCNLTDKTLEL 434
           +             NL  L +    L  A +     K L+SL +L L  N N+       
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPAS 148

Query: 435 I-SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 493
               +     L+++ +++ S     L   +      L    +T  D+             
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 494 FR 495
           F+
Sbjct: 209 FK 210

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 94.4 bits (235), Expect = 6e-21
 Identities = 70/360 (19%), Positives = 123/360 (34%), Gaps = 38/360 (10%)

Query: 126 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 185
           N                ++ + L  L SL+    + ITD  M  +  LT L  L  + + 
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCH-NSSITD--MTGIEKLTGLTKLICTSNN 75

Query: 186 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 245
           +T      L     LT L  +   +T      ++ L  L YLN +  +L+       S+ 
Sbjct: 76  ITT---LDLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLTKLD---VSQN 126

Query: 246 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 305
             L  LN   N +T+   + +   T L  L+           +++T    L  L+ S  +
Sbjct: 127 PLLTYLNCARNTLTE---IDVSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNK 181

Query: 306 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 365
           +       +S    L  +N     I+   L        L  L+  + ++T+     +T L
Sbjct: 182 ITEL---DVSQNKLLNRLNCDTNNITKLDL---NQNIQLTFLDCSSNKLTE---IDVTPL 232

Query: 366 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 425
           T LT+ D     +T+   +       L +L      L +  + H   L         +  
Sbjct: 233 TQLTYFDCSVNPLTELDVS---TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIK 289

Query: 426 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 485
            L       ++  T L  L+   + IT      L     L  L L + ++T  D+     
Sbjct: 290 ELD------VTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELTELDVSHNTK 340

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 93.2 bits (232), Expect = 2e-20
 Identities = 85/441 (19%), Positives = 153/441 (34%), Gaps = 69/441 (15%)

Query: 53  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 112
             S   +  ++  +  I  +  + L SLD +    I+D  +  +  L+ LT L    N  
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNS-SITD--MTGIEKLTGLTKLICTSN-- 74

Query: 113 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 172
                        N+  LDL + T              L  L     N +T+     ++ 
Sbjct: 75  -------------NITTLDLSQNT-------------NLTYLACD-SNKLTNL---DVTP 104

Query: 173 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 232
           LT L  L    +K+T   ++       LT LN     +T      +S    L  L+ +  
Sbjct: 105 LTKLTYLNCDTNKLTKLDVS---QNPLLTYLNCARNTLTE---IDVSHNTQLTELDCHLN 158

Query: 233 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 292
           +         +    L  L+  FN+IT+   + +     L  LN D+  I     ++L  
Sbjct: 159 KKITKL--DVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITK---LDLNQ 210

Query: 293 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 352
              L  L+ S  ++       ++ LT L   + S   +++     ++ LS L +L+    
Sbjct: 211 NIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT 264

Query: 353 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 412
            + +  L   T L           +  D     + +   L  L+    G+T+     +  
Sbjct: 265 DLLEIDLTHNTQLIYFQAEGCRKIKELD-----VTHNTQLYLLDCQAAGITE---LDLSQ 316

Query: 413 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 472
              L  L L+    LT   L+ +S  T L SL+  N+ I       +  +  L +     
Sbjct: 317 NPKLVYLYLNNT-ELT--ELD-VSHNTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAE 370

Query: 473 CKVTANDIKRLQSRDLPNLVS 493
            +      + L +  L   VS
Sbjct: 371 GQTITMPKETLTNNSLTIAVS 391

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 83.2 bits (206), Expect = 3e-17
 Identities = 66/406 (16%), Positives = 151/406 (37%), Gaps = 45/406 (11%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110
           + L  +  + +++T    + L   +NL  L  +   ++++     +  L+ LT L+    
Sbjct: 64  TGLTKLICTSNNITT---LDLSQNTNLTYLACDSN-KLTN---LDVTPLTKLTYLNCD-T 115

Query: 111 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 170
           N +T       +    L  L+  R        +++    +L  L+   C+         +
Sbjct: 116 NKLTKLD---VSQNPLLTYLNCARN---TLTEIDVSHNTQLTELD---CHLNKKITKLDV 166

Query: 171 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 230
           +  T L +L  S +K+T+  ++     + L  LN +   +T      L+    L +L+ +
Sbjct: 167 TPQTQLTTLDCSFNKITELDVS---QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCS 220

Query: 231 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 290
             +L++      + +  L   +   N +T+   + +  L+ L +L+     + +  L + 
Sbjct: 221 SNKLTE---IDVTPLTQLTYFDCSVNPLTE---LDVSTLSKLTTLHCIQTDLLEIDLTHN 274

Query: 291 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 350
           T L   +       +        ++  T L  ++    GI++  L +      L  L L+
Sbjct: 275 TQLIYFQAEGCRKIKELD-----VTHNTQLYLLDCQAAGITELDLSQ---NPKLVYLYLN 326

Query: 351 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 410
             ++T+  ++  T    L  L    A I D   + +     L +     G       + +
Sbjct: 327 NTELTELDVSHNTK---LKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTITMPKETL 381

Query: 411 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 456
              +SLT+       +     + +  G  G+   + + + IT   L
Sbjct: 382 T-NNSLTIAVSPDLLDQFGNPMNIEPGDGGV--YDQATNTITWENL 424

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.0 bits (229), Expect = 9e-21
 Identities = 53/274 (19%), Positives = 98/274 (35%), Gaps = 21/274 (7%)

Query: 216 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 275
           +            +    L            ++K L+L  N ++      L   T LE L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 276 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 335
           NL S  +     ++L  L  L+ L+L++       ++ L    ++E+++ +   IS  S 
Sbjct: 64  NLSSNVL--YETLDLESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANNNISRVSC 116

Query: 336 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRS 394
            +       K++ L   +IT          + + +LDL    I   + A    +   L  
Sbjct: 117 SR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 395 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 454
           L +    + D  VK     + L  L+LS N  L     E      G+  +++ N+++   
Sbjct: 174 LNLQYNFIYD--VKGQVVFAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLRNNKLVLI 229

Query: 455 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 488
             + L+  +NL    L       N       RD 
Sbjct: 230 E-KALRFSQNLEHFDLRG-----NGFHCGTLRDF 257

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 88.1 bits (219), Expect = 2e-19
 Identities = 53/301 (17%), Positives = 110/301 (36%), Gaps = 21/301 (6%)

Query: 197 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 256
             +  +  +    +  A      +  ++  L+L+   LS       +    L++LNL  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 257 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 316
            + +   + L+ L+ L +L+L++  + +     L    +++ L  ++  +         G
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCSRGQG 121

Query: 317 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFG 375
             N+    L+   I+          S ++ L+L   +I     A L  S   L HL+L  
Sbjct: 122 KKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 376 ARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-E 433
             I D  G         L++L++    L   G    +  + +T ++L  N  L    + +
Sbjct: 179 NFIYDVKGQVVF---AKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNN-KLV--LIEK 231

Query: 434 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 493
            +     L   ++  +      LR     KN R  T+    V     +  +   +P L  
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 494 F 494
           +
Sbjct: 291 Y 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 84.3 bits (209), Expect = 4e-18
 Identities = 52/291 (17%), Positives = 107/291 (36%), Gaps = 17/291 (5%)

Query: 148 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 207
             + +   +   + +  +         N+K L +S + ++    A L    KL LLNL  
Sbjct: 9   GNRYKIEKV-TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 208 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 267
             +       L +L +L  L+LN   + +          S++ L+   N I+    V   
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISR---VSCS 117

Query: 268 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLS 326
                +++ L +  I     ++      ++ L+L   ++ +     L+     LE +NL 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 327 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 386
           +  I    ++     + LK+L+L + ++   G     S  G+T + L   ++     A L
Sbjct: 178 YNFIY--DVKGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEKA-L 233

Query: 387 RNFKNLRSLEICGGGLT-DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 436
           R  +NL   ++ G G               +  +       LT +  E  +
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.0 bits (185), Expect = 4e-15
 Identities = 47/326 (14%), Positives = 107/326 (32%), Gaps = 23/326 (7%)

Query: 75  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 134
           +  +         +        +   N+  L    N  ++       A    L  L+L  
Sbjct: 10  NRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSS 67

Query: 135 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 194
              ++   ++L+ L  L +L++   N + +     L    ++++L  + + ++    +  
Sbjct: 68  N-VLY-ETLDLESLSTLRTLDLNN-NYVQE-----LLVGPSIETLHAANNNISRVSCSRG 119

Query: 195 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNL 253
           +G +    + L    +T            + YL+L   ++   +  E  +   +L+ LNL
Sbjct: 120 QGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 254 GFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGL 311
            +N I D  +        L++L+L S  +        +      +  + L + ++     
Sbjct: 177 QYNFIYD--VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA---GVTWISLRNNKL-VLIE 230

Query: 312 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 371
           + L    NLE  +L   G   G+LR      + +   +  + +           T  T  
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 372 DLFGARITDSGAAYLRNFKNLRSLEI 397
                   D  A +      L     
Sbjct: 290 HYGAYCCEDLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 22/128 (17%), Positives = 52/128 (40%), Gaps = 13/128 (10%)

Query: 364 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 423
           +        +  + +  + A+  ++  N++ L++ G  L+      +   + L LLNLS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 424 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 483
           N  L +     +  L+ L +L+++N+ +       L    ++ +L   +     N+I R+
Sbjct: 68  N-VLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAAN-----NNISRV 114

Query: 484 QSRDLPNL 491
                   
Sbjct: 115 SCSRGQGK 122

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 92.5 bits (230), Expect = 2e-20
 Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 4/227 (1%)

Query: 247 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 306
           + ++LNL  N+I    +   K L +LE L L    I    +    GL NL  LEL D ++
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 307 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSL 365
            +        L+ L+ + L    I          + SL+ L+L + ++++     A   L
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184

Query: 366 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 425
           + L +L+L    + +     L     L  L++ G  L+       + L  L  L + Q+ 
Sbjct: 185 SNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS- 241

Query: 426 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 472
            +          L  LV +N++++ +T        PL +L  + L  
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.4 bits (222), Expect = 3e-19
 Identities = 47/226 (20%), Positives = 84/226 (37%), Gaps = 3/226 (1%)

Query: 200 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 259
             LLNL    +    ++S   L  L  L L+R  +       F+ + +L  L L  N +T
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125

Query: 260 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLT 318
                    L+ L+ L L +  I          + +L+ L+L +  ++         GL+
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185

Query: 319 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 378
           NL  +NL+   +    +  L  L  L  L+L    ++     +   L  L  L +  ++I
Sbjct: 186 NLRYLNLAMCNLR--EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243

Query: 379 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 424
                    N ++L  + +    LT         L  L  ++L  N
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.0 bits (208), Expect = 1e-17
 Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 3/217 (1%)

Query: 160 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 219
           N I    +     L +L+ LQ+S + +    I    GL  L  L L    +T     +  
Sbjct: 74  NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 133

Query: 220 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLD 278
            L  L  L L    +       F++I SL+ L+LG    ++       +GL+NL  LNL 
Sbjct: 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193

Query: 279 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 338
            C + +  + NLT L  L  L+LS   + +       GL +L+ + +  + I        
Sbjct: 194 MCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251

Query: 339 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 375
             L SL  +NL    +T       T L  L  + L  
Sbjct: 252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.1 bits (190), Expect = 2e-15
 Identities = 55/229 (24%), Positives = 88/229 (38%), Gaps = 28/229 (12%)

Query: 75  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 134
           +N + L+ +   QI    +   + L +L  L   RN+ I    + AF GL NL  L+L  
Sbjct: 64  TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFD 121

Query: 135 C--TRIH----GGLVNLK------------------GLMKLESLNIKWCNCITDSDMKPL 170
              T I       L  LK                   +  L  L++     ++       
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 171 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 230
            GL+NL+ L ++   + +  I  L  L KL  L+L G  ++A    S   L  L  L + 
Sbjct: 182 EGLSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239

Query: 231 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 279
           + Q+       F  + SL  +NL  N +T         L +LE ++L  
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.9 bits (179), Expect = 5e-14
 Identities = 44/201 (21%), Positives = 84/201 (41%), Gaps = 12/201 (5%)

Query: 295 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 354
           N + L L + Q+    +     L +LE + LS   I    +    GL++L +L L   ++
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 355 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDL 413
           T     A   L+ L  L L    I    +       +LR L++     L+       + L
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184

Query: 414 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 473
           S+L  LNL+   NL    +  ++ L  L  L++S + +++      + L +L+ L +   
Sbjct: 185 SNLRYLNLAMC-NLR--EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ- 240

Query: 474 KVTANDIKRLQS---RDLPNL 491
               + I+ ++     +L +L
Sbjct: 241 ----SQIQVIERNAFDNLQSL 257

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 38/176 (21%), Positives = 62/176 (35%), Gaps = 7/176 (3%)

Query: 318 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 377
           TN   +NL    I    +     L  L+ L L    I    + A   L  L  L+LF  R
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 378 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 437
           +T            L+ L +    +          + SL  L+L +   L+  +     G
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 438 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 493
           L+ L  LN++   +    + +L PL  L  L L       N +  ++      L+ 
Sbjct: 184 LSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSG-----NHLSAIRPGSFQGLMH 232

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 14/185 (7%)

Query: 51  SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 107
           ++L +++L     + + +   ++L   S L+ L       I          + +L  L  
Sbjct: 112 ANLNTLELFDNRLTTIPNGAFVYL---SKLKELWLRNN-PIESIPSYAFNRIPSLRRLDL 167

Query: 108 RRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDS 165
                ++     AF GL NL  L+L  C    I     NL  L+KL+ L++   N ++  
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP----NLTPLIKLDELDLSG-NHLSAI 222

Query: 166 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 225
                 GL +L+ L +  S++          LQ L  +NL    +T    D  + L  L 
Sbjct: 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282

Query: 226 YLNLN 230
            ++L+
Sbjct: 283 RIHLH 287

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 92.6 bits (230), Expect = 3e-20
 Identities = 50/404 (12%), Positives = 127/404 (31%), Gaps = 28/404 (6%)

Query: 75  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 134
           +  +         +        +   N+  L    N  ++       A    L  L+L  
Sbjct: 10  NRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSS 67

Query: 135 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 194
              ++   ++L+ L  L +L++   N + +     L    ++++L  + + ++    +  
Sbjct: 68  N-VLY-ETLDLESLSTLRTLDLNN-NYVQE-----LLVGPSIETLHAANNNISRVSCSRG 119

Query: 195 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNL 253
           +G +    + L    +T            + YL+L   ++   +  E  +   +L+ LNL
Sbjct: 120 QGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 254 GFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGL 311
            +N I D  +        L++L+L S  +        +      +  + L + ++     
Sbjct: 177 QYNFIYD--VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA---GVTWISLRNNKL-VLIE 230

Query: 312 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 371
           + L    NLE  +L   G   G+LR      + +   +  + +           T  T  
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 372 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK----DLSSLTLLNLSQNCNL 427
                   D  A +      L+  E        +  + ++    + +    ++  +    
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE-QY 348

Query: 428 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 471
                ++       ++L      +        +    L     +
Sbjct: 349 RTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQ 392

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 90.3 bits (224), Expect = 1e-19
 Identities = 57/338 (16%), Positives = 117/338 (34%), Gaps = 20/338 (5%)

Query: 150 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 209
           + +   +   + +  +         N+K L +S + ++    A L    KL LLNL    
Sbjct: 11  RYKIEKVT-DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 210 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 269
           +       L +L +L  L+LN   + +          S++ L+   N I+    V     
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISR---VSCSRG 119

Query: 270 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFT 328
              +++ L +  I     ++      ++ L+L   ++ +     L+     LE +NL + 
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 329 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 388
            I    ++     + LK+L+L + ++   G     S  G+T + L   ++     A LR 
Sbjct: 180 FIY--DVKGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEKA-LRF 235

Query: 389 FKNLRSLEICGGGL-TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 447
            +NL   ++ G G               +  +       LT +  E     T     +  
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE---CTVPTLGHYG 292

Query: 448 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 485
                         L  L+           ++ +RL+ 
Sbjct: 293 AYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLEC 330

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 89.9 bits (223), Expect = 2e-19
 Identities = 48/321 (14%), Positives = 110/321 (34%), Gaps = 16/321 (4%)

Query: 173 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 232
               K  +++ S +  +  +  +    +  L+L G P++      L+    L  LNL+  
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 233 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 292
            L +        + +L+ L+L  N + +     L    ++E+L+  +  I     V+ + 
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISR---VSCSR 118

Query: 293 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDA 351
               K + L++ ++           + ++ ++L    I   +  +LA    +L+ LNL  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 352 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 411
             I D  +        L  LDL   ++   G    ++   +  + +    L     K ++
Sbjct: 179 NFIYD--VKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE-KALR 234

Query: 412 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV-SNSRITSAGLRHLKPLKNLRSLTL 470
              +L   +L  N        +  S    + ++   +  ++T                  
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

Query: 471 ESCKVTANDIKRLQSRDLPNL 491
               + A    RL +      
Sbjct: 295 CCEDLPAPFADRLIALKRKEH 315

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 86.4 bits (214), Expect = 3e-18
 Identities = 53/274 (19%), Positives = 98/274 (35%), Gaps = 21/274 (7%)

Query: 216 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 275
           +            +    L            ++K L+L  N ++      L   T LE L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 276 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 335
           NL S  +     ++L  L  L+ L+L++       ++ L    ++E+++ +   IS  S 
Sbjct: 64  NLSSNVL--YETLDLESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANNNISRVSC 116

Query: 336 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRS 394
            +       K++ L   +IT          + + +LDL    I   + A    +   L  
Sbjct: 117 SR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 395 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 454
           L +    + D  VK     + L  L+LS N  L     E      G+  +++ N+++   
Sbjct: 174 LNLQYNFIYD--VKGQVVFAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLRNNKLVLI 229

Query: 455 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 488
             + L+  +NL    L       N       RD 
Sbjct: 230 E-KALRFSQNLEHFDLRG-----NGFHCGTLRDF 257

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 73.3 bits (180), Expect = 4e-14
 Identities = 59/466 (12%), Positives = 129/466 (27%), Gaps = 48/466 (10%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110
            ++  +DLSG+ ++      L   + L+ L+ +    + +     L  LS L +L    N
Sbjct: 34  WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYE--TLDLESLSTLRTLDLNNN 90

Query: 111 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 170
                  ++      ++  L       I    V+       +++ +   N IT       
Sbjct: 91  Y------VQELLVGPSIETLHAAN-NNISR--VSCSRGQGKKNIYLAN-NKITMLRDLDE 140

Query: 171 SGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 229
              + ++ L +  +++   +          L  LNL+   +    +        L  L+L
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDL 198

Query: 230 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD----SCGIGDE 285
           +  +L+  G  +F     +  ++L  N++       L+   NLE  +L      CG   +
Sbjct: 199 SSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 286 GLVNLTGLCNLKC-------------------LELSDTQVGSSGLRHLSGLTNLESINLS 326
                  +  +                                       L  L+    +
Sbjct: 257 FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHA 316

Query: 327 FTGISDGSLRKL----AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 382
                     +L       +  + ++    Q                 L+     + +  
Sbjct: 317 LLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQV 376

Query: 383 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 442
           +   R    L        G  +      ++ S L LL             +       + 
Sbjct: 377 SNGRRAHAELDGTLQQAVGQIEL-QHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIR 435

Query: 443 SLNVSNSRITS--AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 486
             ++   + T        LK L     L L S   T  ++   +  
Sbjct: 436 DWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQN 481

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 22/128 (17%), Positives = 52/128 (40%), Gaps = 13/128 (10%)

Query: 364 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 423
           +        +  + +  + A+  ++  N++ L++ G  L+      +   + L LLNLS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 424 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 483
           N  L +     +  L+ L +L+++N+ +       L    ++ +L   +     N+I R+
Sbjct: 68  N-VLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAAN-----NNISRV 114

Query: 484 QSRDLPNL 491
                   
Sbjct: 115 SCSRGQGK 122

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.7 bits (228), Expect = 5e-20
 Identities = 56/229 (24%), Positives = 86/229 (37%), Gaps = 8/229 (3%)

Query: 247 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDT 304
           + + LNL  N I        + L +LE L L    I   + G     GL +L  LEL D 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA--FNGLASLNTLELFDN 133

Query: 305 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT 363
            +          L+ L  + L    I          + SL  L+L + +++      A  
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 364 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 423
            L  L +L+L    I D     L     L  LE+ G    +        LSSL  L +  
Sbjct: 194 GLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251

Query: 424 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 472
           +  ++        GL  LV LN++++ ++S       PL+ L  L L  
Sbjct: 252 S-QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 83.3 bits (206), Expect = 2e-17
 Identities = 56/217 (25%), Positives = 86/217 (39%), Gaps = 3/217 (1%)

Query: 160 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 219
           N I          L +L+ LQ+  + +    +    GL  L  L L    +T     +  
Sbjct: 85  NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE 144

Query: 220 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLD 278
            L  L  L L    +       F+++ SL  L+LG   ++        +GL NL+ LNL 
Sbjct: 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204

Query: 279 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 338
            C I D  + NLT L  L+ LE+S             GL++L+ + +  + +S       
Sbjct: 205 MCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF 262

Query: 339 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 375
            GL+SL  LNL    ++       T L  L  L L  
Sbjct: 263 DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.9 bits (200), Expect = 1e-16
 Identities = 50/211 (23%), Positives = 77/211 (36%), Gaps = 15/211 (7%)

Query: 194 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 253
            + L  L +L L    +    + + + L SL  L L    L+      F  +  L+ L L
Sbjct: 95  FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154

Query: 254 GFNEITDECLVHLKGLTNLESLNLDSC----GIGDEGLVNLTGLCNLKCLELSDTQVGSS 309
             N I          + +L  L+L        I +     L    NLK L L    +   
Sbjct: 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF---NLKYLNLGMCNI--K 209

Query: 310 GLRHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 366
            + +L+ L  LE + +S   F  I  GS     GLSSLK L +   Q++     A   L 
Sbjct: 210 DMPNLTPLVGLEELEMSGNHFPEIRPGSFH---GLSSLKKLWVMNSQVSLIERNAFDGLA 266

Query: 367 GLTHLDLFGARITDSGAAYLRNFKNLRSLEI 397
            L  L+L    ++          + L  L +
Sbjct: 267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.1 bits (190), Expect = 3e-15
 Identities = 59/239 (24%), Positives = 91/239 (38%), Gaps = 24/239 (10%)

Query: 75  SNLQSLD--FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 132
           SN + L+   N    I        R L +L  L   RN+ I    + AF GL +L  L+L
Sbjct: 75  SNTRYLNLMENNIQMIQAD---TFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLEL 130

Query: 133 ERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 189
                T I  G    + L KL  L ++  N I        + + +L  L +    K+   
Sbjct: 131 FDNWLTVIPSGA--FEYLSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKLEYI 187

Query: 190 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 249
                +GL  L  LNL  C +    + +L+ L  L  L ++     +     F  + SLK
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

Query: 250 VLNLGFNEITDECLVH---LKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSD 303
            L +  ++++    +      GL +L  LNL    +      L   T L  L  L L  
Sbjct: 246 KLWVMNSQVSL---IERNAFDGLASLVELNLAHNNLSSLPHDL--FTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 73.2 bits (180), Expect = 5e-14
 Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 12/201 (5%)

Query: 295 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 354
           N + L L +  +          L +LE + L    I    +    GL+SL +L L    +
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 355 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDL 413
           T     A   L+ L  L L    I    +       +L  L++     L        + L
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195

Query: 414 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 473
            +L  LNL    N+ D  +  ++ L GL  L +S +            L +L+ L + + 
Sbjct: 196 FNLKYLNLGMC-NIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN- 251

Query: 474 KVTANDIKRLQS---RDLPNL 491
               + +  ++      L +L
Sbjct: 252 ----SQVSLIERNAFDGLASL 268

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 38/176 (21%), Positives = 57/176 (32%), Gaps = 7/176 (3%)

Query: 318 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 377
           +N   +NL    I          L  L+ L L    I    + A   L  L  L+LF   
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 378 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 437
           +T   +        LR L +    +          + SL  L+L +   L   +     G
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 438 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 493
           L  L  LN+    I    + +L PL  L  L +       N    ++      L S
Sbjct: 195 LFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSG-----NHFPEIRPGSFHGLSS 243

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.3 bits (222), Expect = 9e-20
 Identities = 52/290 (17%), Positives = 111/290 (38%), Gaps = 28/290 (9%)

Query: 75  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE- 133
            +   LD     +I++      + L NL +L    NN I+     AFA L+ L +L L  
Sbjct: 52  PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILI-NNKISKISPGAFAPLVKLERLYLSK 109

Query: 134 -RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI- 191
            +   +   +        L+ L +   N IT       +GL  +  +++  + +  SGI 
Sbjct: 110 NQLKELPEKM-----PKTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163

Query: 192 -AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 250
               +G++KL+ + +    +T           SL  L+L+  +++         + +L  
Sbjct: 164 NGAFQGMKKLSYIRIADTNITTI---PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAK 220

Query: 251 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSD---TQ 305
           L L FN I+      L    +L  L+L++  +     GL +      ++ + L +   + 
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK---YIQVVYLHNNNISA 277

Query: 306 VGSSGLRH---LSGLTNLESINLSFTGISDGSLRKLA--GLSSLKSLNLD 350
           +GS+        +   +   ++L    +    ++      +    ++ L 
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.6 bits (215), Expect = 7e-19
 Identities = 51/295 (17%), Positives = 102/295 (34%), Gaps = 30/295 (10%)

Query: 160 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 219
           N IT+        L NL +L +  +K++         L KL  L L    +         
Sbjct: 62  NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL---PEK 118

Query: 220 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH--LKGLTNLESLNL 277
              +L  L ++  +++      F+ +  + V+ LG N +    + +   +G+  L  + +
Sbjct: 119 MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

Query: 278 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 337
               I     +      +L  L L   ++       L GL NL  + LSF  IS      
Sbjct: 179 ADTNITT---IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235

Query: 338 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 397
           LA    L+ L+L+  ++       L     +  + L    I+            + S + 
Sbjct: 236 LANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNIS-----------AIGSNDF 283

Query: 398 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE--LISGLTGLVSLNVSNSR 450
           C  G            +S + ++L  N  +    ++      +    ++ + N +
Sbjct: 284 CPPGYNT-------KKASYSGVSLFSN-PVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.9 bits (208), Expect = 6e-18
 Identities = 59/302 (19%), Positives = 109/302 (36%), Gaps = 40/302 (13%)

Query: 200 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 259
             LL+L+   +T         L +L  L L   ++S      F+ +  L+ L L  N++ 
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 260 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH--LSGL 317
           +   +  K    L+ L +    I         GL  +  +EL    + SSG+ +    G+
Sbjct: 114 E---LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170

Query: 318 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 377
             L  I ++ T I+  ++ +     SL  L+LD  +IT    A+L  L  L  L L    
Sbjct: 171 KKLSYIRIADTNIT--TIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227

Query: 378 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 437
           I+                 +  G L         +   L  L+L+ N  L      L + 
Sbjct: 228 ISA----------------VDNGSL--------ANTPHLRELHLNNN-KLVKVPGGL-AD 261

Query: 438 LTGLVSLNVSNSRITS------AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 491
              +  + + N+ I++          +     +   ++L S  V   +I+    R +   
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321

Query: 492 VS 493
            +
Sbjct: 322 AA 323

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 68.5 bits (168), Expect = 7e-13
 Identities = 51/256 (19%), Positives = 87/256 (33%), Gaps = 54/256 (21%)

Query: 247 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 306
              +L+L  N+IT+      K L NL +L L +  I          L  L+ L LS  Q 
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ- 111

Query: 307 GSSGLRHLSG--LTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-- 359
               L+ L       L+ + +     T +         GL+ +  + L    +  +G+  
Sbjct: 112 ----LKELPEKMPKTLQELRVHENEITKVRKSVF---NGLNQMIVVELGTNPLKSSGIEN 164

Query: 360 AALTSLTGLTHLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 417
            A   +  L+++ +    IT    G                                SLT
Sbjct: 165 GAFQGMKKLSYIRIADTNITTIPQGL-----------------------------PPSLT 195

Query: 418 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 477
            L+L  N  +T      + GL  L  L +S + I++     L    +LR L L +     
Sbjct: 196 ELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN----- 249

Query: 478 NDIKRLQS--RDLPNL 491
           N + ++     D   +
Sbjct: 250 NKLVKVPGGLADHKYI 265

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 34/182 (18%), Positives = 67/182 (36%), Gaps = 22/182 (12%)

Query: 318 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 377
            +   ++L    I++        L +L +L L   +I+     A   L  L  L L   +
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 378 ITD--SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-- 433
           + +           K L+ L +    +T         L+ + ++ L  N  L    +E  
Sbjct: 112 LKELPEKM-----PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENG 165

Query: 434 LISGLTGLVSLNVSNSRITS--AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 491
              G+  L  + ++++ IT+   GL       +L  L L+      N I ++ +  L  L
Sbjct: 166 AFQGMKKLSYIRIADTNITTIPQGL-----PPSLTELHLDG-----NKITKVDAASLKGL 215

Query: 492 VS 493
            +
Sbjct: 216 NN 217

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 84.1 bits (208), Expect = 3e-19
 Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 22/132 (16%)

Query: 53  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 112
           + ++D + S +   G  H++    ++ +    C  I DG LE L  L NL          
Sbjct: 63  IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQK-------- 114

Query: 113 ITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 171
                        +++++++  C  +   G++ L     L+ L +     + + +    +
Sbjct: 115 -------------SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQA 161

Query: 172 GLTNLKSLQISC 183
             T+L SL++  
Sbjct: 162 FKTSLPSLELKL 173

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 74.5 bits (183), Expect = 7e-16
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 7/110 (6%)

Query: 271 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTN----LESINL 325
            +++++     I   G  ++ GL  ++ + L     +    L  LS L N    +  + +
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121

Query: 326 SF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL 373
                ++D  +  L    +LK L L D   + +         T L  L+L
Sbjct: 122 ISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 72.6 bits (178), Expect = 4e-15
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 121 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN----L 176
                 +  +D      +  G  +++GL  +E + +  C+ I D  ++ LS L N    +
Sbjct: 57  PLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM 116

Query: 177 KSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLN 230
             ++I  C  VTD GI  L   + L  L L   P V        +   SL  L L 
Sbjct: 117 LEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 71.4 bits (175), Expect = 9e-15
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 7/113 (6%)

Query: 292 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLS----SLKS 346
               ++ ++ +D+ + S G  H+ GL  +E I L     I DG L +L+ L     S+  
Sbjct: 59  DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLE 118

Query: 347 LNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 397
           + + +   +TD G+ AL     L +L L     + +          +L SLE+
Sbjct: 119 MEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 67.6 bits (165), Expect = 2e-13
 Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 23/146 (15%)

Query: 161 CITDSDMKPLSGLTNLK--SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDS 217
              D +  P   L   K  ++  + S +   G  +++GLQ +  + L  C  +   CL+ 
Sbjct: 46  WQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER 105

Query: 218 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 277
           LS L +L    L   ++    C                  +TD+ ++ L    NL+ L L
Sbjct: 106 LSQLENLQKSML---EMEIISCGN----------------VTDKGIIALHHFRNLKYLFL 146

Query: 278 DSC-GIGDEGLVNLTGLCNLKCLELS 302
               G+ ++  +      +L  LEL 
Sbjct: 147 SDLPGVKEKEKIVQAFKTSLPSLELK 172

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 65.6 bits (160), Expect = 8e-13
 Identities = 20/108 (18%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 391 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG----LVSLNV 446
            +++++     +   G  H++ L  +  + L +   + D  LE +S L      ++ + +
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121

Query: 447 SN-SRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQSRD-LPNL 491
            +   +T  G+  L   +NL+ L L     V   +      +  LP+L
Sbjct: 122 ISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSL 169

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 65.6 bits (160), Expect = 8e-13
 Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 22/131 (16%)

Query: 319 NLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR 377
            +++I+ + + I       + GL  ++ + L     I D  L  L+ L  L         
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQK------- 114

Query: 378 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 436
                        ++  +EI   G +TD G+  +    +L  L LS    + +K   + +
Sbjct: 115 -------------SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQA 161

Query: 437 GLTGLVSLNVS 447
             T L SL + 
Sbjct: 162 FKTSLPSLELK 172

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 85.5 bits (212), Expect = 8e-18
 Identities = 63/433 (14%), Positives = 142/433 (32%), Gaps = 49/433 (11%)

Query: 71  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 130
           +   + L+              +       N       +   +       +  L +L  +
Sbjct: 202 VMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLK------WDNLKDLTDV 254

Query: 131 DLERC---TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG--------LTNLKSL 179
           ++  C   T++   L  L    +++ +N+  CN     +                 ++ +
Sbjct: 255 EVYNCPNLTKLPTFLKALP---EMQLINV-ACNRGISGEQLKDDWQALADAPVGEKIQII 310

Query: 180 QISCSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 238
            I  + +    +   L+ ++KL +L      +    L +  +   L  LNL   Q+++  
Sbjct: 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIP 369

Query: 239 CEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSC---GIGDEGLVNLT--- 291
                    ++ L+   N++     +   K ++ + +++        +  +    L    
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429

Query: 292 -GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRK----LAGLSS 343
               N+  + LS+ Q+        S  + L SINL     T I   SL+           
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 344 LKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARITD-----SGAAYLRNFKNLRSLEI 397
           L S++L   ++T        T+L  L  +DL     +        ++ L+ F      + 
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA 549

Query: 398 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 457
            G        + I    SLT L +  N ++     ++      +  L++ ++   S  L 
Sbjct: 550 QGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKI---TPNISVLDIKDNPNISIDLS 605

Query: 458 HLKPLKNLRSLTL 470
           ++ P        L
Sbjct: 606 YVCPYIEAGMYML 618

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 60/438 (13%), Positives = 137/438 (31%), Gaps = 41/438 (9%)

Query: 69  IHLKDCSNLQSLD---FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 125
           + L     +  L    F    ++ D     +  L+ L  L+   +     + +    G+ 
Sbjct: 75  VSLNSNGRVTGLSLEGFGASGRVPD----AIGQLTELEVLALGSHGEKVNERLFGPKGIS 130

Query: 126 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC--NCITDSDMKPLSGLTNLKSLQISC 183
             +  + ++  R+H     +    + +  ++     N          S    LK  QI  
Sbjct: 131 ANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQ 190

Query: 184 SKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 242
                + +   +  L KL    +   P  A  +       +  Y    + +        +
Sbjct: 191 LSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK-----W 245

Query: 243 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI--------GDEGLVNLTGLC 294
             +  L  + +       +    LK L  ++ +N+               + L +     
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

Query: 295 NLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 353
            ++ + +    + +  +   L  +  L  +   +  +  G L        L SLNL   Q
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE-GKLPAFGSEIKLASLNLAYNQ 364

Query: 354 ITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKH--- 409
           IT+           + +L     ++         ++   + +++     +     K+   
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

Query: 410 ----IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP---- 461
                    +++ +NLS N  ++    EL S  + L S+N+  + +T      LK     
Sbjct: 425 LDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483

Query: 462 ---LKNLRSLTLESCKVT 476
                 L S+ L   K+T
Sbjct: 484 FKNTYLLTSIDLRFNKLT 501

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.5 bits (173), Expect = 5e-13
 Identities = 59/381 (15%), Positives = 116/381 (30%), Gaps = 55/381 (14%)

Query: 71  LKDCSNLQSLDFNFC-------IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 123
           LK    +Q ++           ++     L        +  +    NN  T     +   
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328

Query: 124 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 183
           +  L  L+     ++ G L      +KL SLN+   N IT+           +++L  + 
Sbjct: 329 MKKLGMLECLYN-QLEGKLPAFGSEIKLASLNL-AYNQITEIPANFCGFTEQVENLSFAH 386

Query: 184 SKVTD-SGIAYLKGLQKLTLLNLEGCPVT-------AACLDSLSALGSLFYLNLNRCQLS 235
           +K+     I   K +  ++ ++     +             +     ++  +NL+  Q+S
Sbjct: 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446

Query: 236 DDGCEKFSKIGSLKVLNLGFNEITD-------ECLVHLKGLTNLESLNLDSCGIGDEGLV 288
               E FS    L  +NL  N +T+       +   + K    L S++L           
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-------- 498

Query: 289 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISD--GSLRKLAGLSS 343
            LT L +    +              + L  L  I+LS   F+       +   L G   
Sbjct: 499 KLTKLSD----DFR-----------ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGI 543

Query: 344 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 403
               +    +        +T    LT L +    I            N+  L+I      
Sbjct: 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK---ITPNISVLDIKDNPNI 600

Query: 404 DAGVKHIKDLSSLTLLNLSQN 424
              + ++       +  L  +
Sbjct: 601 SIDLSYVCPYIEAGMYMLFYD 621

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 84.9 bits (210), Expect = 9e-18
 Identities = 70/422 (16%), Positives = 140/422 (33%), Gaps = 26/422 (6%)

Query: 75  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 134
                L+ +    IS+     +  LS L  L    +N I    +  F     L  LDL  
Sbjct: 21  QKTTILNISQN-YISELWTSDILSLSKLRILII-SHNRIQYLDISVFKFNQELEYLDLSH 78

Query: 135 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 194
             ++    ++    + L+ L++ +         K    ++ LK L +S + +  S +  +
Sbjct: 79  -NKLVK--ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 195 KGLQKLTL-LNLEGCPVTAACLDSLSALG--SLFYLNLNRCQLSDDGCEKFSKIGSLKVL 251
             L    + L L          + L      SL  +     +           + +L++ 
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 252 NLGFNEITDECLVHLKGLTNLE------SLNLDSCGIGDEGLV---NLTGLCNLKCLELS 302
           N+      ++C   L  L  L+      +L L++        +    L     +    +S
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255

Query: 303 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-----GLSSLKSLNLDARQITDT 357
           + ++           +      LS   +                S++   N         
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV 315

Query: 358 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT--DAGVKHIKDLSS 415
            +   + ++   HLD     +TD+      +   L +L +    L       +    + S
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375

Query: 416 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 475
           L  L++SQN    D+     S    L+SLN+S++ +T    R L     ++ L L S K+
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKI 433

Query: 476 TA 477
            +
Sbjct: 434 KS 435

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 71.0 bits (174), Expect = 3e-13
 Identities = 54/368 (14%), Positives = 122/368 (33%), Gaps = 28/368 (7%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT-SLSFRR 109
           S L  + LS + +  S ++ +   +  + L             E L+  +  +  + F  
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 110 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 169
           N         +   + NL   +++     +     L  L KL++        + + +   
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 170 LSGLT-------------NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 216
            S +              ++ ++++               L+ L++  +           
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294

Query: 217 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 276
                 ++   N              SKI     L+   N +TD    +   LT LE+L 
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354

Query: 277 LDSCGIGDEGLVNLTG----LCNLKCLELSDTQVGSSGLR-HLSGLTNLESINLSFTGIS 331
           L    +  + L  +      + +L+ L++S   V     +   S   +L S+N+S   ++
Sbjct: 355 LQMNQL--KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412

Query: 332 DGSLRKLAGLSSLKSLNLDARQIT--DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 389
           D   R L     +K L+L + +I      +  L +L     L++   ++           
Sbjct: 413 DTIFRCL--PPRIKVLDLHSNKIKSIPKQVVKLEALQ---ELNVASNQLKSVPDGIFDRL 467

Query: 390 KNLRSLEI 397
            +L+ + +
Sbjct: 468 TSLQKIWL 475

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 68.0 bits (166), Expect = 3e-12
 Identities = 47/312 (15%), Positives = 104/312 (33%), Gaps = 16/312 (5%)

Query: 75  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 134
               + +F+F + +S   + +L  LSN+  +      +     +        L  L L  
Sbjct: 171 VFPTNKEFHFILDVSVKTVANLE-LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229

Query: 135 CT---RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG----LTNLKSLQISCSKVT 187
                     ++ L     +   +I         D +        L  L   Q+      
Sbjct: 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289

Query: 188 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 247
                  +    + + N          +   S +    +L+ +   L+D   E    +  
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349

Query: 248 LKVLNLGFNEIT--DECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDT 304
           L+ L L  N++    +       + +L+ L++    +  DE   + +   +L  L +S  
Sbjct: 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

Query: 305 QVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALT 363
            +  +  R L     ++ ++L    I   S+ +++  L +L+ LN+ + Q+         
Sbjct: 410 ILTDTIFRCL--PPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLKSVPDGIFD 465

Query: 364 SLTGLTHLDLFG 375
            LT L  + L  
Sbjct: 466 RLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.1 bits (130), Expect = 5e-08
 Identities = 43/271 (15%), Positives = 87/271 (32%), Gaps = 6/271 (2%)

Query: 223 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 282
               LN+++  +S+        +  L++L +  N I    +   K    LE L+L    +
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 283 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGL 341
                ++     NLK L+LS     +  +      ++ L+ + LS T +   S+  +A L
Sbjct: 82  VK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138

Query: 342 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 401
           +  K L +      +        L       L     T+    ++ +        +    
Sbjct: 139 NISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 402 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 461
           +      +        L  L  N  L++ TL  I          +     T+     +  
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 462 LKNLRSLTLESCKVTANDIKRLQSRDLPNLV 492
           +K    L       +   +K L    + + V
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 14/165 (8%)

Query: 98  GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLN 155
            +S    L F  NN +T    +    L  L  L L+      +         +  L+ L+
Sbjct: 322 KISPFLHLDFS-NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380

Query: 156 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 215
           I   +   D      S   +L SL +S + +TD    +     ++ +L+L         +
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD--TIFRCLPPRIKVLDLHSNK-----I 433

Query: 216 DSLSA----LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 256
            S+      L +L  LN+   QL       F ++ SL+ + L  N
Sbjct: 434 KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 7/179 (3%)

Query: 318 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 377
                +N+S   IS+     +  LS L+ L +   +I    ++       L +LDL   +
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 378 ITDSGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS 436
           +            NL+ L++         + K   ++S L  L LS   +L   ++  I+
Sbjct: 81  LV---KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEKSSVLPIA 136

Query: 437 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 495
            L     L V             + L++  + +L     T  +   +    +  + +  
Sbjct: 137 HLNISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 81.6 bits (202), Expect = 3e-17
 Identities = 51/233 (21%), Positives = 87/233 (37%), Gaps = 11/233 (4%)

Query: 223 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT--DECLVHLKGLTNLESLNLDSC 280
           S   L L   +L       F K+  L  L+L  N ++    C     G T+L+ L+L   
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 281 GIGD--EGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRK 337
           G+       + L     L+ L+   + +   S       L NL  +++S T         
Sbjct: 89  GVITMSSNFLGLE---QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 338 LAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 396
             GLSSL+ L +       +      T L  LT LDL   ++         +  +L+ L 
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 397 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL-TGLVSLNVSN 448
           +             K L+SL +L+ S N ++     + +    + L  LN++ 
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 81.2 bits (201), Expect = 3e-17
 Identities = 54/236 (22%), Positives = 91/236 (38%), Gaps = 18/236 (7%)

Query: 200 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK--FSKIGSLKVLNLGFNE 257
            T L LE   + +        L  L  L+L+   LS  GC         SLK L+L FN 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 258 ITDECL-VHLKGLTNLESLNLDSCGIG---DEGLVNLTGLCNLKCLELSDTQVGSSGLRH 313
           +    +  +  GL  LE L+     +    +  +     L NL  L++S T    +    
Sbjct: 90  VIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDISHTHTRVAFNGI 145

Query: 314 LSGLTNLESINLSF----TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 369
            +GL++LE + ++                  L +L  L+L   Q+      A  SL+ L 
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFT---ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202

Query: 370 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL-SSLTLLNLSQN 424
            L++             +   +L+ L+     +  +  + ++   SSL  LNL+QN
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 54/258 (20%), Positives = 89/258 (34%), Gaps = 36/258 (13%)

Query: 100 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 159
           S+ T L    N  + +     F  L  L KL L                           
Sbjct: 28  SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSS------------------------- 61

Query: 160 NCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-ACLD 216
           N ++          G T+LK L +S + V     +   GL++L  L+ +   +   +   
Sbjct: 62  NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFS 120

Query: 217 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGLTNLESL 275
              +L +L YL+++           F+ + SL+VL +  N   +  L      L NL  L
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180

Query: 276 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF---TGISD 332
           +L  C +          L +L+ L +S     S        L +L+ ++ S         
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240

Query: 333 GSLRKLAGLSSLKSLNLD 350
             L+     SSL  LNL 
Sbjct: 241 QELQHF--PSSLAFLNLT 256

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 9/202 (4%)

Query: 295 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA--GLSSLKSLNLDAR 352
           +   LEL   ++ S        LT L  ++LS  G+S       +  G +SLK L+L   
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 353 QITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 411
            +     +    L  L HLD   + +   S  +   + +NL  L+I       A      
Sbjct: 89  GVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 412 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 471
            LSSL +L ++ N    +   ++ + L  L  L++S  ++          L +L+ L + 
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207

Query: 472 SCKVTANDIKRLQSRDLPNLVS 493
                 N+   L +     L S
Sbjct: 208 H-----NNFFSLDTFPYKCLNS 224

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 48/213 (22%), Positives = 77/213 (36%), Gaps = 13/213 (6%)

Query: 51  SSLLSVDLSGSDVTDSGLIH--LKDCSNLQSLD--FNFCIQISDGGLEHLRGLSNLTSLS 106
           + L  + LS + ++  G         ++L+ LD  FN  I +S        GL  L  L 
Sbjct: 52  TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN----FLGLEQLEHLD 107

Query: 107 FRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITD 164
           F+ +N         F  L NL+ LD+          G+    GL  LE L +   +   +
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI--FNGLSSLEVLKMAGNSFQEN 165

Query: 165 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 224
                 + L NL  L +S  ++          L  L +LN+      +        L SL
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225

Query: 225 FYLNLNRCQLSDDGCEKFSKI-GSLKVLNLGFN 256
             L+ +   +     ++      SL  LNL  N
Sbjct: 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 33/180 (18%), Positives = 64/180 (35%), Gaps = 12/180 (6%)

Query: 318 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA--ALTSLTGLTHLDLFG 375
           ++   + L    +          L+ L  L+L +  ++  G    +    T L +LDL  
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 376 ARITDSGAAYLRNFKNLRSLEICGGGLT---DAGVKHIKDLSSLTLLNLSQNCNLTDKTL 432
             +    +      + L  L+     L    +  V     L +L  L++S   +      
Sbjct: 88  NGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDISHT-HTRVAFN 143

Query: 433 ELISGLTGLVSLNVS-NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 491
            + +GL+ L  L ++ NS   +        L+NL  L L  C++    +       L +L
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ--LSPTAFNSLSSL 201

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.8 bits (208), Expect = 3e-17
 Identities = 99/437 (22%), Positives = 161/437 (36%), Gaps = 44/437 (10%)

Query: 51  SSLLSVDLSGSDVTDS--GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 108
           +SL S+DLS + ++     L  L  CS L+ L+ +       G +     L++L  L   
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159

Query: 109 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 168
            N+          +G                 G V   G  +L+ L I     I+     
Sbjct: 160 ANS---------ISG-------------ANVVGWVLSDGCGELKHLAISGNK-ISGD--V 194

Query: 169 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 228
            +S   NL+ L +S +  +   I +L     L  L++ G  ++     ++S    L  LN
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTG-IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253

Query: 229 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG-LTNLESLNLDSCGIGDEGL 287
           ++  Q    G      + SL+ L+L  N+ T E    L G    L  L+L          
Sbjct: 254 ISSNQFV--GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

Query: 288 VNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDG---SLRKLAGLSS 343
                   L+ L LS     G   +  L  +  L+ ++LSF   S     SL  L   +S
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL--SAS 369

Query: 344 LKSLNLDARQITDTGLAAL--TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 401
           L +L+L +   +   L  L       L  L L     T      L N   L SL +    
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429

Query: 402 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL--RHL 459
           L+      +  LS L  L L  N  L  +  + +  +  L +L +  + +T  G     L
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDFNDLT--GEIPSGL 486

Query: 460 KPLKNLRSLTLESCKVT 476
               NL  ++L + ++T
Sbjct: 487 SNCTNLNWISLSNNRLT 503

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.2 bits (196), Expect = 9e-16
 Identities = 65/287 (22%), Positives = 111/287 (38%), Gaps = 17/287 (5%)

Query: 198 QKLTLLNLEGCPVTAAC---LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 254
            K+T ++L   P+         SL +L  L  L L+   ++      F    SL  L+L 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS-VSGFKCSASLTSLDLS 108

Query: 255 FNEITDE--CLVHLKGLTNLESLNLDSCGIGDEGLV-NLTGLCNLKCLELSDTQ---VGS 308
            N ++     L  L   + L+ LN+ S  +   G V     L +L+ L+LS         
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 309 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 368
            G     G   L+ + +S   IS G +  ++   +L+ L++ +   +   +  L   + L
Sbjct: 169 VGWVLSDGCGELKHLAISGNKIS-GDV-DVSRCVNLEFLDVSSNNFSTG-IPFLGDCSAL 225

Query: 369 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 428
            HLD+ G +++   +  +     L+ L I        G      L SL  L+L++N   T
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV--GPIPPLPLKSLQYLSLAEN-KFT 282

Query: 429 DK-TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 474
            +    L      L  L++S +    A          L SL L S  
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.2 bits (165), Expect = 6e-12
 Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 13/236 (5%)

Query: 247 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 306
           S+ + +   N         L  LT LESL L +  I    +       +L  L+LS   +
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS-VSGFKCSASLTSLDLSRNSL 112

Query: 307 GSS--GLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDT---GLA 360
                 L  L   + L+ +N+S   +   G +     L+SL+ L+L A  I+     G  
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172

Query: 361 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 420
                  L HL + G +I  SG   +    NL  L++     +  G+  + D S+L  L+
Sbjct: 173 LSDGCGELKHLAISGNKI--SGDVDVSRCVNLEFLDVSSNNFST-GIPFLGDCSALQHLD 229

Query: 421 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 476
           +S N  L+      IS  T L  LN+S+++    G     PLK+L+ L+L   K T
Sbjct: 230 ISGN-KLSGDFSRAISTCTELKLLNISSNQFV--GPIPPLPLKSLQYLSLAENKFT 282

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.1 bits (162), Expect = 1e-11
 Identities = 80/428 (18%), Positives = 143/428 (33%), Gaps = 68/428 (15%)

Query: 46  IASQGSSLLSVDLSGSDVTDSGLI--HLKDCSNLQSLDFNFCIQISDGGL--EHLRGLSN 101
           ++    +L  +DLSG+     G +      CS L+SL  +     S G L  + L  +  
Sbjct: 289 LSGACDTLTGLDLSGNHF--YGAVPPFFGSCSLLESLALSSN-NFS-GELPMDTLLKMRG 344

Query: 102 LTSLSFRRNNAITAQGMKAFAGLI---------NLVKLDLERCTRIHGGL---VNLKGLM 149
           L  L    N          F+G +         +L+ LDL       G +   +      
Sbjct: 345 LKVLDLSFNE---------FSGELPESLTNLSASLLTLDLSSN-NFSGPILPNLCQNPKN 394

Query: 150 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 209
            L+ L ++  N  T      LS  + L SL +S + ++ +  + L  L KL  L L    
Sbjct: 395 TLQELYLQN-NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453

Query: 210 VTAACLDSLSALGSLFYLNLNRCQLSDDGC--EKFSKIGSLKVLNLGFNEITDECLVHLK 267
           +       L  + +L  L L+   L+  G      S   +L  ++L  N +T E    + 
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLT--GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511

Query: 268 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 327
            L NL  L L +         + +G        +            L    +L  ++L+ 
Sbjct: 512 RLENLAILKLSNN--------SFSG-------NIPAE---------LGDCRSLIWLDLNT 547

Query: 328 TGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA--A 384
              + G++   +   S   + N     I       + +          G  +   G    
Sbjct: 548 NLFN-GTIPAAMFKQSGKIAAN----FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602

Query: 385 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 444
            L          I              +  S+  L++S N  L+    + I  +  L  L
Sbjct: 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIPKEIGSMPYLFIL 661

Query: 445 NVSNSRIT 452
           N+ ++ I+
Sbjct: 662 NLGHNDIS 669

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 57/291 (19%), Positives = 102/291 (35%), Gaps = 51/291 (17%)

Query: 48  SQGSSLLSVDLSGSDVTDSGLI--HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 105
               +L ++ L  +D+T  G I   L +C+NL  +  +   +++    + +  L NL  L
Sbjct: 463 MYVKTLETLILDFNDLT--GEIPSGLSNCTNLNWISLSNN-RLTGEIPKWIGRLENLAIL 519

Query: 106 SFRRNN---AITAQGMKAFAGLINLVKLDLERCTRIHG----GLVNLKGLMKLESLNIKW 158
               N+    I A+         +L+ LDL      +G     +    G +         
Sbjct: 520 KLSNNSFSGNIPAE----LGDCRSLIWLDLNT-NLFNGTIPAAMFKQSGKIAA------- 567

Query: 159 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLD 216
            N I       +      K    + + +   GI    L  L      N+           
Sbjct: 568 -NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626

Query: 217 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 276
           +    GS+ +L+++   LS    ++   +  L +LNLG N+I+      +  L  L  L+
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686

Query: 277 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 327
           L S          L G            ++  +    +S LT L  I+LS 
Sbjct: 687 L-SSN-------KLDG------------RIPQA----MSALTMLTEIDLSN 713

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.4 bits (199), Expect = 7e-17
 Identities = 51/298 (17%), Positives = 98/298 (32%), Gaps = 37/298 (12%)

Query: 200 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 259
            TLL+L+   ++    D    L  L+ L L   ++S    + FS +  L+ L +  N + 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 260 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 319
           +   +     ++L  L +    I        +GL N+ C+E+                  
Sbjct: 116 E---IPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-------------- 158

Query: 320 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 379
                L  +G   G+   L     L  L +   ++T        +L     L L   +I 
Sbjct: 159 -----LENSGFEPGAFDGL----KLNYLRISEAKLTGIPKDLPETLN---ELHLDHNKIQ 206

Query: 380 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 439
                 L  +  L  L +    +       +  L +L  L+L  N  L+     L   L 
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGL-PDLK 264

Query: 440 GLVSLNVSNSRITS------AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 491
            L  + +  + IT         +           ++L +  V   +++    R + + 
Sbjct: 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.1 bits (198), Expect = 1e-16
 Identities = 62/290 (21%), Positives = 102/290 (35%), Gaps = 29/290 (10%)

Query: 75  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE- 133
            +   LD      IS+   +  +GL +L +L    NN I+    KAF+ L  L KL +  
Sbjct: 54  PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLV-NNKISKIHEKAFSPLRKLQKLYISK 111

Query: 134 -RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 192
                I   L        L  L I   N I        SGL N+  +++  + + +SG  
Sbjct: 112 NHLVEIPPNL-----PSSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165

Query: 193 Y--LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 250
                GL KL  L +    +T    D    L  L +L+ N+ Q  +       +   L  
Sbjct: 166 PGAFDGL-KLNYLRISEAKLTGIPKDLPETLNEL-HLDHNKIQAIELED--LLRYSKLYR 221

Query: 251 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGS 308
           L LG N+I       L  L  L  L+LD+  +     GL +L     L+ + L    +  
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLK---LLQVVYLHTNNITK 278

Query: 309 ------SGLRHLSGLTNLESINLSFTGISDGSLRKLA--GLSSLKSLNLD 350
                   +           I+L    +    ++      ++   ++   
Sbjct: 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 50/266 (18%), Positives = 89/266 (33%), Gaps = 17/266 (6%)

Query: 194 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 253
            KGLQ L  L L    ++     + S L  L  L +++  L +      S   SL  L +
Sbjct: 74  FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS---SLVELRI 130

Query: 254 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLR 312
             N I         GL N+  + +    + + G          L  L +S+ ++      
Sbjct: 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD 190

Query: 313 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 372
               L  L   +     I    L      S L  L L   QI      +L+ L  L  L 
Sbjct: 191 LPETLNELHLDHNKIQAIELEDLL---RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247

Query: 373 LFGARITDSGAAYLRNFKNLRSLEICGGGLTD------AGVKHIKDLSSLTLLNLSQNCN 426
           L   +++    A L + K L+ + +    +T         V      +    ++L  N  
Sbjct: 248 LDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN-P 305

Query: 427 LTDKTLE--LISGLTGLVSLNVSNSR 450
           +    ++      +T  +++   N +
Sbjct: 306 VPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 34/182 (18%), Positives = 61/182 (33%), Gaps = 23/182 (12%)

Query: 318 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 377
            +   ++L    IS+       GL  L +L L   +I+     A + L  L  L +    
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 378 ITD--SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-- 433
           + +            +L  L I    +          L ++  + +  N  L +   E  
Sbjct: 114 LVEIPPNL-----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPG 167

Query: 434 LISGLTGLVSLNVSNSRITS--AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 491
              GL  L  L +S +++T     L      + L  L L+      N I+ ++  DL   
Sbjct: 168 AFDGLK-LNYLRISEAKLTGIPKDL-----PETLNELHLDH-----NKIQAIELEDLLRY 216

Query: 492 VS 493
             
Sbjct: 217 SK 218

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.8 bits (197), Expect = 2e-16
 Identities = 59/279 (21%), Positives = 112/279 (40%), Gaps = 28/279 (10%)

Query: 200 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 259
           +  L+L    +T      L    +L  L L    ++    + FS +GSL+ L+L +N ++
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113

Query: 260 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 319
           +      K L++L  LNL                   K L  +      S L  L  L  
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGN--------------PYKTLGETSL---FSHLTKLQILRV 156

Query: 320 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 379
                 +FT I        AGL+ L+ L +DA  +      +L S+  ++HL L   +  
Sbjct: 157 GN--MDTFTKIQRKDF---AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211

Query: 380 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS--QNCNLTDKTL----E 433
                ++    ++  LE+    L       +    + +L+     +N  +TD++L    +
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271

Query: 434 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 472
           L++ ++GL+ L  S +++ S        L +L+ + L +
Sbjct: 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 77.5 bits (191), Expect = 1e-15
 Identities = 45/244 (18%), Positives = 93/244 (38%), Gaps = 18/244 (7%)

Query: 247 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDT 304
           ++K L+L  N IT      L+   NL++L L S GI   +E     + L +L+ L+LS  
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS--FSSLGSLEHLDLSYN 110

Query: 305 QVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA 360
            + +        L++L  +NL    +  + + SL   + L+ L+ L +      T     
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL--FSHLTKLQILRVGNMDTFTKIQRK 168

Query: 361 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 420
               LT L  L++  + +       L++ +N+  L +            +   SS+  L 
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228

Query: 421 LSQN-------CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 473
           L            L+      +       ++ +++  +    ++ L  +  L  L     
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-VMKLLNQISGLLELEFSRN 287

Query: 474 KVTA 477
           ++ +
Sbjct: 288 QLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 76.3 bits (188), Expect = 2e-15
 Identities = 54/283 (19%), Positives = 106/283 (37%), Gaps = 32/283 (11%)

Query: 75  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 134
             ++SLD +   +I+      L+   NL +L    +N I      +F+ L +L  LDL  
Sbjct: 52  EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLT-SNGINTIEEDSFSSLGSLEHLDLSY 109

Query: 135 C--TRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLSGLTNLKSLQI-SCSKVTDSG 190
              + +       K L  L  LN+   N      +    S LT L+ L++ +    T   
Sbjct: 110 NYLSNLSSSW--FKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 191 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 250
                GL  L  L ++   + +    SL ++ ++ +L L+  Q             S++ 
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226

Query: 251 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 310
           L L   ++      H   L+  E+              +L      + ++++D  +    
Sbjct: 227 LELRDTDLDT---FHFSELSTGETN-------------SLIKKFTFRNVKITDESL-FQV 269

Query: 311 LRHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLD 350
           ++ L+ ++ L  +  S      + DG       L+SL+ + L 
Sbjct: 270 MKLLNQISGLLELEFSRNQLKSVPDGI---FDRLTSLQKIWLH 309

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.0 bits (169), Expect = 5e-13
 Identities = 56/264 (21%), Positives = 97/264 (36%), Gaps = 17/264 (6%)

Query: 174 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 233
             +KSL +S +++T    + L+    L  L L    +     DS S+LGSL +L+L+   
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 234 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCG----IGDEGLV 288
           LS+     F  + SL  LNL  N         L   LT L+ L + +      I  +   
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 289 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLS--S 343
            LT    L+ LE+  + + S   + L  + N+  + L       + +  +   + +    
Sbjct: 172 GLT---FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228

Query: 344 LKSLNLDARQIT---DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 400
           L+  +LD    +        +L       ++ +    +       L     L  LE    
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRN 287

Query: 401 GLTDAGVKHIKDLSSLTLLNLSQN 424
            L          L+SL  + L  N
Sbjct: 288 QLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 38/203 (18%), Positives = 75/203 (36%), Gaps = 12/203 (5%)

Query: 295 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 354
            +K L+LS+ ++       L    NL+++ L+  GI+       + L SL+ L+L    +
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 355 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI----CGGGLTDAGVKHI 410
           ++   +    L+ LT L+L G      G   L  F +L  L+I         T    K  
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL--FSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 411 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 470
             L+ L  L +  + +L     + +  +  +  L +   +        +    ++  L L
Sbjct: 171 AGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229

Query: 471 ESCKVTANDIKRLQSRDLPNLVS 493
                   D+      +L    +
Sbjct: 230 RD-----TDLDTFHFSELSTGET 247

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.1 bits (193), Expect = 3e-16
 Identities = 49/226 (21%), Positives = 81/226 (35%), Gaps = 24/226 (10%)

Query: 247 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 306
           + + + L  N I+       +   NL  L L S  +        TGL  L+ L+LSD   
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD--- 89

Query: 307 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 366
                            N     +   +     GL  L +L+LD   + + G      L 
Sbjct: 90  -----------------NAQLRSVDPATFH---GLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 367 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 426
            L +L L    +        R+  NL  L + G  ++    +  + L SL  L L QN  
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-R 188

Query: 427 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 472
           +          L  L++L +  + +++     L PL+ L+ L L  
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 50/229 (21%), Positives = 77/229 (33%), Gaps = 29/229 (12%)

Query: 100 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIK 157
           +    +    N  I+     +F    NL  L L      RI        GL  LE L+  
Sbjct: 32  AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAA--FTGLALLEQLD-- 86

Query: 158 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 217
                       LS    L+S+  +             GL +L  L+L+ C +       
Sbjct: 87  ------------LSDNAQLRSVDPAT----------FHGLGRLHTLHLDRCGLQELGPGL 124

Query: 218 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 277
              L +L YL L    L     + F  +G+L  L L  N I+       +GL +L+ L L
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 278 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 326
               +          L  L  L L    + +     L+ L  L+ + L+
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.8 bits (174), Expect = 8e-14
 Identities = 44/207 (21%), Positives = 72/207 (34%), Gaps = 9/207 (4%)

Query: 223 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 282
           +   + L+  ++S      F    +L +L L  N +         GL  LE L+L     
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD--- 89

Query: 283 GDEGLVNL-----TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 337
            +  L ++      GL  L  L L    +   G     GL  L+ + L    +       
Sbjct: 90  -NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 338 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 397
              L +L  L L   +I+     A   L  L  L L   R+        R+   L +L +
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 398 CGGGLTDAGVKHIKDLSSLTLLNLSQN 424
               L+    + +  L +L  L L+ N
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 40/201 (19%), Positives = 69/201 (34%), Gaps = 7/201 (3%)

Query: 294 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-R 352
              + + L   ++            NL  + L    ++        GL+ L+ L+L    
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 353 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 412
           Q+     A    L  L  L L    + + G    R    L+ L +    L        +D
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 413 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 472
           L +LT L L  N  ++        GL  L  L +  +R+        + L  L +L L +
Sbjct: 152 LGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 473 CKVTANDIKRLQSRDLPNLVS 493
                N++  L +  L  L +
Sbjct: 211 -----NNLSALPTEALAPLRA 226

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 48/208 (23%), Positives = 79/208 (37%), Gaps = 6/208 (2%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110
           ++   + L G+ ++       + C NL  L  +    ++        GL+ L  L    N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDN 90

Query: 111 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 168
             + +     F GL  L  L L+RC    +  GL   +GL  L+ L ++  N +      
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL--FRGLAALQYLYLQD-NALQALPDD 147

Query: 169 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 228
               L NL  L +  ++++       +GL  L  L L    V      +   LG L  L 
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 229 LNRCQLSDDGCEKFSKIGSLKVLNLGFN 256
           L    LS    E  + + +L+ L L  N
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDN 235

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 77.3 bits (189), Expect = 1e-15
 Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 23/179 (12%)

Query: 145 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI-----AYLKGLQK 199
           L  +  L +L IK  N ++           NLKSL+I    + DS +     + L  L+K
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKP----RPNLKSLEIISGGLPDSVVEDILGSDLPNLEK 223

Query: 200 LTL---LNLEGCPVTAACLDSL---SALGSLFYLNLNRCQLSDDGCEKFSK---IGSLKV 250
           L L   +   G          L       +L +L +   +  +   E F +   +  L+ 
Sbjct: 224 LVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLET 283

Query: 251 LNLGFNEITDE----CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 305
           +++    +TDE     L H+  + +L+ +N+    + DE    L     +K +++SD+Q
Sbjct: 284 MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMK-IDVSDSQ 341

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 65.0 bits (157), Expect = 2e-11
 Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 18/138 (13%)

Query: 269 LTNLESLNLDSCGIGDEGLVNLTG--LCNLKCLEL---SDTQVGSSGLRHLSGL------ 317
             NL+SL + S G+ D  + ++ G  L NL+ L L    +       +     L      
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251

Query: 318 TNLESINLSFTGISDGSLRKLAG---LSSLKSLNLDARQITDTGLAAL----TSLTGLTH 370
            NL+ + +      +  +        L  L+++++ A  +TD G   L      +  L  
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311

Query: 371 LDLFGARITDSGAAYLRN 388
           +++    ++D     L+ 
Sbjct: 312 INMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 64.6 bits (156), Expect = 2e-11
 Identities = 35/190 (18%), Positives = 61/190 (32%), Gaps = 29/190 (15%)

Query: 266 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL--SGLTNLESI 323
           L  +  L +L +        G        NLK LE+    +  S +  +  S L NLE +
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKK---PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKL 224

Query: 324 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 383
            L       G    +     L                +      L  L +  A   +   
Sbjct: 225 VLYVGVEDYGFDGDMNVFRPL---------------FSKDRFPNLKWLGIVDAEEQNVVV 269

Query: 384 AYL---RNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCNLTDKTLE-LI 435
                      L +++I  G LTD G + +      +  L  +N+  N  L+D+  + L 
Sbjct: 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQ 328

Query: 436 SGLTGLVSLN 445
             L   + ++
Sbjct: 329 KSLPMKIDVS 338

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 61.5 bits (148), Expect = 2e-10
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 41/197 (20%)

Query: 312 RHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS--LTGL 368
             L  +  L ++ +  T  +S G         +LKSL + +  + D+ +  +    L  L
Sbjct: 166 PVLDAMPLLNNLKIKGTNNLSIGKKP----RPNLKSLEIISGGLPDSVVEDILGSDLPNL 221

Query: 369 THLDLFGAR---ITDSGAAYL------RNFKNLRSLEICGGGLTDAGVKHI---KDLSSL 416
             L L+        D              F NL+ L I      +  V+       L  L
Sbjct: 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281

Query: 417 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 476
             +++S    LTD+   L+                    L H+  +K+L+ + ++   ++
Sbjct: 282 ETMDISAG-VLTDEGARLL--------------------LDHVDKIKHLKFINMKYNYLS 320

Query: 477 ANDIKRLQSRDLPNLVS 493
               K LQ   LP  + 
Sbjct: 321 DEMKKELQKS-LPMKID 336

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 68.4 bits (167), Expect = 2e-12
 Identities = 74/422 (17%), Positives = 146/422 (34%), Gaps = 28/422 (6%)

Query: 75  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 134
              ++L  +    IS+  +  +  LS L  L    N  I +     F    +L  LD+  
Sbjct: 52  PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVS- 108

Query: 135 CTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 192
               H  L N+    +  L  L++ + +       K    LT L  L +S +K     + 
Sbjct: 109 ----HNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164

Query: 193 YLKGLQKLTL-LNLEGCPVTAACLDSLSALGSLF-YLNLNRCQL-SDDGCEKFSKIGSLK 249
            +  L    + L+L    +     +SL    +   +L  +   L S       + +G L+
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224

Query: 250 VLNLGFNEITDECL----VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---LS 302
           + N+  N+   + L      L     L ++ L       +  V L      + +E   + 
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 303 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-----GLSSLKSLNLDARQITDT 357
           +  +     R     +     +L    + +              + +    L        
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344

Query: 358 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT--DAGVKHIKDLSS 415
            +    S +  T L+      TDS        K L++L +   GL          K++SS
Sbjct: 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS 404

Query: 416 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 475
           L  L++S N   +       +    ++ LN+S++ +T +  R L P   ++ L L + ++
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRI 462

Query: 476 TA 477
            +
Sbjct: 463 MS 464

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 54/367 (14%), Positives = 116/367 (31%), Gaps = 22/367 (5%)

Query: 75  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 134
           + L  L      +     L  +  L     L    +  I     ++   + N   L L  
Sbjct: 146 TKLTFLGL-SAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQ-IPNTTVLHLVF 203

Query: 135 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT------NLKSLQISCSKVTD 188
                  +     +  L  L +       ++  + ++ L+       L ++ +   + T 
Sbjct: 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263

Query: 189 SGI------AYLKGLQKLTLLN--LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 240
                     + + ++ L + N  +           S +AL SL   ++           
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323

Query: 241 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 300
            +S    + +  L  ++     +V     ++   LN       D      + L  L+ L 
Sbjct: 324 LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383

Query: 301 LSDTQVGS--SGLRHLSGLTNLESINLSFTGISDGSLRKL-AGLSSLKSLNLDARQITDT 357
           L    + +          +++LE++++S   ++  +  +  A   S+  LNL +  +T +
Sbjct: 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443

Query: 358 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 417
               L     +  LDL   RI           + L+ L +    L          L+SL 
Sbjct: 444 VFRCLPPK--VKVLDLHNNRIMSIPKDVTH-LQALQELNVASNQLKSVPDGVFDRLTSLQ 500

Query: 418 LLNLSQN 424
            + L  N
Sbjct: 501 YIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 12/155 (7%)

Query: 342 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT--DSGAAYLRNFKNLRSLEICG 399
              K+L+L    I++  +  ++ L+ L  L L   RI   D        F   + LE   
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV-----FLFNQDLEYL- 105

Query: 400 GGLTDAGVKHI--KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 457
             ++   +++I    ++SL  L+LS N        +    LT L  L +S ++     L 
Sbjct: 106 -DVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164

Query: 458 HLKPLK-NLRSLTLESCKVTANDIKRLQSRDLPNL 491
            +  L  +   L L S  +   + + LQ  +   L
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 79/469 (16%), Positives = 155/469 (33%), Gaps = 81/469 (17%)

Query: 3   PRDISQQIFNELV-YSRCLTEVSLEAFRDCALQYPGVNDKWMDVIASQGSSLLSVDLSGS 61
           PR++S     E + +S  LTE+ +EA    +           +   +      +      
Sbjct: 5   PRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKT---------EYYNAWSEWERNAPPGNG 55

Query: 62  DVTDSGLIHLKDC--SNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGM 118
           +  +  +  L+DC       L+      +++ GL  L     +L SL    N+       
Sbjct: 56  EQREMAVSRLRDCLDRQAHELE------LNNLGLSSLPELPPHLESLVASCNSLTELP-- 107

Query: 119 KAFAGLINLVKLDLERCTRIHGGLVNLKGLM-KLESLNIKWCNCITDSDMKPLSGLTNLK 177
           +    L +L+  +          L  L  L   LE L +   N +       L   + LK
Sbjct: 108 ELPQSLKSLLVDNNN--------LKALSDLPPLLEYLGVS-NNQLEKLP--ELQNSSFLK 156

Query: 178 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 237
            + +  + +             L  +      +    L  L  L  L  +  +   L   
Sbjct: 157 IIDVDNNSLKK----LPDLPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLK-- 208

Query: 238 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 297
             +      SL+ +  G N + +  L  L+ L  L ++  D+  +  + L +L    +L+
Sbjct: 209 --KLPDLPLSLESIVAGNNILEE--LPELQNLPFLTTIYADNNLL--KTLPDL--PPSLE 260

Query: 298 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD--GSLRKL-----------AGLSSL 344
            L + D  + +        LT L+     F+G+S+   +L  L               SL
Sbjct: 261 ALNVRDNYL-TDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSL 319

Query: 345 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 404
           + LN+   ++ +           L  L      + +         +NL+ L +    L  
Sbjct: 320 EELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLR- 370

Query: 405 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 453
                  D+   ++ +L  N +L     E+      L  L+V  + +  
Sbjct: 371 ----EFPDIPE-SVEDLRMNSHLA----EVPELPQNLKQLHVETNPLRE 410

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.2 bits (162), Expect = 9e-12
 Identities = 74/434 (17%), Positives = 145/434 (33%), Gaps = 83/434 (19%)

Query: 93  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 152
            E LR  SNLT +                  + +  +                    ++ 
Sbjct: 14  QEPLRHSSNLTEMP------------VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 153 SLNIKWCNCIT----DSDMKPLSGL----TNLKSLQISCSKVTDSGI-AYLKGLQKLTLL 203
              ++ C        + +   LS L     +L+SL  SC+ +T+  +    + L+ L + 
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTE--LPELPQSLKSLLVD 119

Query: 204 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 263
           N     ++            L YL ++  QL      +      LK++++  N +     
Sbjct: 120 NNNLKALS-------DLPPLLEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLKKL-- 168

Query: 264 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLES 322
                  +LE +   +  +  E L  L  L  L  +   +       L+ L     +LES
Sbjct: 169 --PDLPPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNS-----LKKLPDLPLSLES 219

Query: 323 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 382
           I      +    L +L  L  L ++  D   +             L  L++    +TD  
Sbjct: 220 IVAGNNILE--ELPELQNLPFLTTIYADNNLLKTL----PDLPPSLEALNVRDNYLTD-- 271

Query: 383 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDL-SSLTLLNLSQNCNLTDKTLELISGLTGL 441
                  ++L  L+     +++     + +L  +L  LN S N  +      L      L
Sbjct: 272 --LPELPQSLTFLD-----VSENIFSGLSELPPNLYYLNASSN-EIR----SLCDLPPSL 319

Query: 442 VSLNVSNSRITS--AGLRHLKPL--------------KNLRSLTLESCKVTA--NDIKRL 483
             LNVSN+++    A    L+ L              +NL+ L +E   +    +  + +
Sbjct: 320 EELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESV 379

Query: 484 QSRDLPNLVSFRPE 497
           +   + + ++  PE
Sbjct: 380 EDLRMNSHLAEVPE 393

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 52/351 (14%), Positives = 117/351 (33%), Gaps = 62/351 (17%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRR 109
             L  + +S + +    L  L++ S L+ +D      + +  L+ L     +L  ++   
Sbjct: 131 PLLEYLGVSNNQLEK--LPELQNSSFLKIID------VDNNSLKKLPDLPPSLEFIAAG- 181

Query: 110 NNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLK----------------GLMKL 151
           NN +    +     L  L  +  +     ++    ++L+                 L  L
Sbjct: 182 NNQLEE--LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFL 239

Query: 152 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 211
            ++     N +            +L++L +  + +T       + L  L +       ++
Sbjct: 240 TTIYAD-NNLLKTLP----DLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLS 293

Query: 212 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLT 270
                      +L+YLN +  ++            SL+ LN+  N++       L     
Sbjct: 294 -------ELPPNLYYLNASSNEIR----SLCDLPPSLEELNVSNNKLI-----ELPALPP 337

Query: 271 NLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI----- 323
            LE L      + +  E   NL  L +++   L +       +  L   ++L  +     
Sbjct: 338 RLERLIASFNHLAEVPELPQNLKQL-HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQ 396

Query: 324 NLSFTGISDGSLRKL-AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 373
           NL    +    LR+      S++ L +++ ++ D    A  +   L     
Sbjct: 397 NLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVF 447

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.5 bits (163), Expect = 4e-12
 Identities = 56/351 (15%), Positives = 104/351 (29%), Gaps = 69/351 (19%)

Query: 124 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 183
                 L  +  T +      L    +  + +    +          +   N +    + 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWR-----QANSNNPQIETRTG 65

Query: 184 SKVTD--SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 241
             +      +           L L   P+     D    L  L ++ ++   L +   + 
Sbjct: 66  RALKATADLLEDAT-QPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLMEL-PDT 122

Query: 242 FSKIGSLKVLNLGFNEIT---DECLVHLKGLTNLESLNLDSC--------GIGD-EGLVN 289
             +   L+ L L  N +          +  L  L  L++ +C         +   +    
Sbjct: 123 MQQFAGLETLTLARNPLRALPAS----IASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 290 LTGLCNLKCLELSDTQVGSSGLRHL----SGLTNLESINLSFTGISDGSL-RKLAGLSSL 344
             GL NL+ L L  T      +R L    + L NL+S+ +  + +S  +L   +  L  L
Sbjct: 179 HQGLVNLQSLRLEWTG-----IRSLPASIANLQNLKSLKIRNSPLS--ALGPAIHHLPKL 231

Query: 345 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL--EICGGGL 402
           + L+L                  L  L L             ++  NL +L  +I     
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLIL-------------KDCSNLLTLPLDIH---- 274

Query: 403 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRIT 452
                     L+ L  L+L    NL+   L  LI+ L     + V      
Sbjct: 275 ---------RLTQLEKLDLRGCVNLS--RLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 53/299 (17%), Positives = 98/299 (32%), Gaps = 42/299 (14%)

Query: 197 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 256
                 L  +G        D LS     +  + NR   +     + +   + ++      
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSA----WRQANSNNPQIETRTGR 66

Query: 257 EITD--ECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLR 312
            +    + L          +L L S  +    +    L+   +L+ + +         L 
Sbjct: 67  ALKATADLLEDAT-QPGRVALELRSVPLPQFPDQAFRLS---HLQHMTIDAAG-----LM 117

Query: 313 HL----SGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITD--------TG 358
            L         LE++ L+   +   +L   +A L+ L+ L++    ++T+          
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 359 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 418
                 L  L  L L    I    A+ + N +NL+SL+I    L+  G   I  L  L  
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALG-PAIHHLPKLEE 233

Query: 419 LNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITS--AGLRHLKPLKNLRSLTLESCK 474
           L+L   C        +  G   L  L + + S + +    +     L  L  L L  C 
Sbjct: 234 LDLR-GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR---LTQLEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 41/243 (16%), Positives = 76/243 (31%), Gaps = 41/243 (16%)

Query: 265 HLKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 323
           H    +  E+L           L      L   +    +D           +   N +  
Sbjct: 7   HHHHSSGRENLYFQGS----TALRPYHDVLSQWQRHYNADRN-RWHSAWRQANSNNPQIE 61

Query: 324 NLSFTGISD--GSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARIT- 379
             +   +      L          +L L +  +           L+ L H+ +  A +  
Sbjct: 62  TRTGRALKATADLLEDAT-QPGRVALELRSVPLPQ--FPDQAFRLSHLQHMTIDAAGLME 118

Query: 380 --DSGAAYLRNFKNLRSLEICGGGLT---DAGVKHIKDLSSLTLLNLSQNCNLTD----- 429
             D+    ++ F  L +L +    L     +    I  L+ L  L++     LT+     
Sbjct: 119 LPDT----MQQFAGLETLTLARNPLRALPAS----IASLNRLRELSIRACPELTELPEPL 170

Query: 430 ---KTLELISGLTGLVSLNVSNSRITS--AGLRHLKPLKNLRSLTLESCKVTA--NDIKR 482
                     GL  L SL +  + I S  A + +   L+NL+SL + +  ++A    I  
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN---LQNLKSLKIRNSPLSALGPAIHH 227

Query: 483 LQS 485
           L  
Sbjct: 228 LPK 230

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 43/275 (15%), Positives = 77/275 (28%), Gaps = 50/275 (18%)

Query: 212 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 271
            +             L            +  S+       +                  N
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57

Query: 272 LESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHL----SGLTNLESINL 325
            +        +    + L + T       LEL         L         L++L+ + +
Sbjct: 58  PQIETRTGRALKATADLLEDAT-QPGRVALELRSVP-----LPQFPDQAFRLSHLQHMTI 111

Query: 326 SFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGA 383
              G+    L   +   + L++L L    +    L A++ SL  L  L            
Sbjct: 112 DAAGLM--ELPDTMQQFAGLETLTLARNPLRA--LPASIASLNRLRELS----------- 156

Query: 384 AYLRNFKNLRSL--EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTG 440
             +R    L  L   +     +       + L +L  L L     +   +L   I+ L  
Sbjct: 157 --IRACPELTELPEPLASTDASGE----HQGLVNLQSLRLEWT-GIR--SLPASIANLQN 207

Query: 441 LVSLNVSNSRITS--AGLRHLKPLKNLRSLTLESC 473
           L SL + NS +++    + H   L  L  L L  C
Sbjct: 208 LKSLKIRNSPLSALGPAIHH---LPKLEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 49/222 (22%), Positives = 81/222 (36%), Gaps = 46/222 (20%)

Query: 71  LKDCSNLQSLDFNFCIQISDGGLEHL----RGLSNLTSLSFRRNN--AITAQGMKAFAGL 124
               S+LQ +  +        GL  L    +  + L +L+  RN   A+ A    + A L
Sbjct: 100 AFRLSHLQHMTIDAA------GLMELPDTMQQFAGLETLTLARNPLRALPA----SIASL 149

Query: 125 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 184
             L +L +  C              +L  L     +           GL NL+SL++  +
Sbjct: 150 NRLRELSIRACP-------------ELTELPEPLAST---DASGEHQGLVNLQSLRLEWT 193

Query: 185 KVTD--SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 242
            +    + IA L+    L  L +   P++ A   ++  L  L  L+L  C    +    F
Sbjct: 194 GIRSLPASIANLQ---NLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIF 249

Query: 243 SKIGSLKVLNL-GFNEIT---DECLVHLKGLTNLESLNLDSC 280
                LK L L   + +     +    +  LT LE L+L  C
Sbjct: 250 GGRAPLKRLILKDCSNLLTLPLD----IHRLTQLEKLDLRGC 287

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 48/212 (22%), Positives = 76/212 (35%), Gaps = 17/212 (8%)

Query: 247 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 306
           S K L+L FN +             L+ L+L  C I          L +L  L L+   +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 307 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA-ALTSL 365
            S  L   SGL++L+ +    T ++      +  L +LK LN+    I    L    ++L
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 366 TGLTHLDLFGARITD--SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS-------SL 416
           T L HLDL   +I             + L  + +    L D  +  +  +         L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTD-----LRVLHQMPLLNLSL-DLSLNPMNFIQPGAFKEIRL 202

Query: 417 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 448
             L L  N  L      +   LT L  + +  
Sbjct: 203 KELALDTN-QLKSVPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 41/190 (21%), Positives = 67/190 (35%), Gaps = 16/190 (8%)

Query: 196 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 255
              +L +L+L  C +      +  +L  L  L L    +       FS + SL+ L    
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 256 NEITDECLVHLKGLTNLESLNLDS---CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 312
             +       +  L  L+ LN+                + L NL+ L+LS  ++ S    
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTNLEHLDLSSNKIQSIYCT 167

Query: 313 HLSGLTNLESINLS-------FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 365
            L  L  +  +NLS          I  G+ +++     LK L LD  Q+          L
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI----RLKELALDTNQLKSVPDGIFDRL 223

Query: 366 TGLTHLDLFG 375
           T L  + L  
Sbjct: 224 TSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 45/207 (21%), Positives = 72/207 (34%), Gaps = 15/207 (7%)

Query: 80  LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTR 137
           L FN    +   G         L  L   R   I      A+  L +L  L L       
Sbjct: 35  LSFN---PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 138 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA-YLKG 196
           +  G     GL  L+ L     N +   +  P+  L  LK L ++ + +    +  Y   
Sbjct: 91  LALGA--FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 197 LQKLTLLNLEGCPVT---AACLDSLSALGSLFY-LNLNRCQLSDDGCEKFSKIGSLKVLN 252
           L  L  L+L    +       L  L  +  L   L+L+   ++      F +I  LK L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELA 206

Query: 253 LGFNEITDECLVHLKGLTNLESLNLDS 279
           L  N++          LT+L+ + L +
Sbjct: 207 LDTNQLKSVPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 40/153 (26%), Positives = 57/153 (37%), Gaps = 7/153 (4%)

Query: 342 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 401
            S K+L+L    +   G  +  S   L  LDL    I        ++  +L +L + G  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 402 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLK 460
           +    +     LSSL  L      NL       I  L  L  LNV+++ I S     +  
Sbjct: 88  IQSLALGAFSGLSSLQKLVAV-ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 461 PLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 493
            L NL  L L S     N I+ +   DL  L  
Sbjct: 147 NLTNLEHLDLSS-----NKIQSIYCTDLRVLHQ 174

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 41/208 (19%), Positives = 75/208 (36%), Gaps = 20/208 (9%)

Query: 295 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 354
           + K L+LS   +   G         L+ ++LS   I          LS L +L L    I
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 355 TDTGLAALTSLTGLTHLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLT---DAGVKH 409
               L A + L+ L  L      +   ++      + K L+ L +    +          
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEY-- 144

Query: 410 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGL----VSLNVSNSRITSAGLRHLKPLKNL 465
             +L++L  L+LS N  +       +  L  +    +SL++S + +        K +  L
Sbjct: 145 FSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RL 202

Query: 466 RSLTLESCKVTANDIKRLQSRDLPNLVS 493
           + L L++     N +K +       L S
Sbjct: 203 KELALDT-----NQLKSVPDGIFDRLTS 225

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.5 bits (157), Expect = 4e-11
 Identities = 58/293 (19%), Positives = 95/293 (32%), Gaps = 66/293 (22%)

Query: 197 LQKLTLLNLEGCPVTAACLDSL--SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 254
                +LN+         L +L       +  L +    L+            L+ L + 
Sbjct: 39  NNGNAVLNVGESG-----LTTLPDCLPAHITTLVIPDNNLTSLPAL----PPELRTLEVS 89

Query: 255 FNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 313
            N++T   L V   GL  L   +     +             L  L +   Q     L  
Sbjct: 90  GNQLTS--LPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQ-----LTS 135

Query: 314 L-SGLTNLESINLSFTGISD-----GSLRKL-----------AGLSSLKSLNLDARQITD 356
           L      L+ +++S   ++        L KL              S L+ L++   Q+  
Sbjct: 136 LPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA- 194

Query: 357 TGLAAL-TSLTGLTHLDLFGARITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLS 414
               +L T  + L  L  +  R+T      L      L+ L + G  LT          S
Sbjct: 195 ----SLPTLPSELYKLWAYNNRLTS-----LPALPSGLKELIVSGNRLTSLP----VLPS 241

Query: 415 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--AGLRHLKPLKNL 465
            L  L +S N  LT     L    +GL+SL+V  +++T     L HL     +
Sbjct: 242 ELKELMVSGN-RLT----SLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTV 289

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.8 bits (155), Expect = 6e-11
 Identities = 73/433 (16%), Positives = 139/433 (32%), Gaps = 85/433 (19%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRR 109
           +    +++  S +T    +     +++ +L       I D  L  L      L +L    
Sbjct: 40  NGNAVLNVGESGLTT---LPDCLPAHITTLV------IPDNNLTSLPALPPELRTLEVSG 90

Query: 110 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 169
           N                L  L +              GL++L   +      +       
Sbjct: 91  N---------------QLTSLPVL-----------PPGLLELSIFSNPL-THLPAL---- 119

Query: 170 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA-LGSLFYLN 228
               + L  L I  +++T S      GLQ+L++ + +        L SL A    L  L 
Sbjct: 120 ---PSGLCKLWIFGNQLT-SLPVLPPGLQELSVSDNQ--------LASLPALPSELCKLW 167

Query: 229 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGL 287
               QL+            L+ L++  N++       L    + L  L   +  +    L
Sbjct: 168 AYNNQLTSLPML----PSGLQELSVSDNQLAS-----LPTLPSELYKLWAYNNRL--TSL 216

Query: 288 VNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKS 346
             L     LK L +S  +     L  L    + L+ + +S   ++  SL  L   S L S
Sbjct: 217 PAL--PSGLKELIVSGNR-----LTSLPVLPSELKELMVSGNRLT--SLPML--PSGLLS 265

Query: 347 LNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 405
           L++   Q+T   L  +L  L+  T ++L G  +++      +  + + S     G +   
Sbjct: 266 LSVYRNQLTR--LPESLIHLSSETTVNLEGNPLSERTL---QALREITSAPGYSGPIIRF 320

Query: 406 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL-NVSNSRITSAGLRHLKPLKN 464
            +           L+L+    L        +            N+   S  L  L   +N
Sbjct: 321 DMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETEN 380

Query: 465 LRSLTLESCKVTA 477
                    ++++
Sbjct: 381 FIKDAGFKAQISS 393

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 60.4 bits (147), Expect = 5e-11
 Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 8/128 (6%)

Query: 250 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGS 308
           ++ L    I                L+L    I   E L     L     ++ SD ++  
Sbjct: 1   MVKLTAELIEQ--AAQYTNAVRDRELDLRGYKIPVIENLGAT--LDQFDAIDFSDNEIRK 56

Query: 309 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTG 367
             L     L  L+++ ++   I          L  L  L L    + +   L  L SL  
Sbjct: 57  --LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS 114

Query: 368 LTHLDLFG 375
           LT+L +  
Sbjct: 115 LTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 8e-07
 Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 6/119 (5%)

Query: 94  EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 153
                      L  R       + + A   L     +D      I   L     L +L++
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGA--TLDQFDAIDFSDN-EIRK-LDGFPLLRRLKT 68

Query: 154 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVT 211
           L +   N I          L +L  L ++ + + +   +  L  L+ LT L +   PVT
Sbjct: 69  LLVN-NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 27/131 (20%), Positives = 44/131 (33%), Gaps = 7/131 (5%)

Query: 347 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 406
           + L A  I     A  T+      LDL G +I               +++     +    
Sbjct: 2   VKLTAELIEQ--AAQYTNAVRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDNEIRK-- 56

Query: 407 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLKPLKNL 465
           +     L  L  L ++ N  +      L   L  L  L ++N+ +     L  L  LK+L
Sbjct: 57  LDGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115

Query: 466 RSLTLESCKVT 476
             L +    VT
Sbjct: 116 TYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 6/115 (5%)

Query: 191 IAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 249
            A      +   L+L G  +    +++L + L     ++ +  ++     + F  +  LK
Sbjct: 12  AAQYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLK 67

Query: 250 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSD 303
            L +  N I        + L +L  L L +  + +   L  L  L +L  L +  
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 6/115 (5%)

Query: 170 LSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 228
            +     + L +   K+    I  L   L +   ++     +    LD    L  L  L 
Sbjct: 15  YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLL 70

Query: 229 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGI 282
           +N  ++   G      +  L  L L  N + +   L  L  L +L  L +    +
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 9/110 (8%)

Query: 386 LRNFKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 444
             N    R L++ G  +    ++++   L     ++ S N     + L+    L  L +L
Sbjct: 15  YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEI---RKLDGFPLLRRLKTL 69

Query: 445 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA-NDIKRLQSRDLPNLVS 493
            V+N+RI   G    + L +L  L L +  +    D+  L    L +L  
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPL--ASLKSLTY 117

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 20/137 (14%), Positives = 48/137 (35%), Gaps = 13/137 (9%)

Query: 144 NLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 202
                ++   L++     I    ++ L + L    ++  S +++    +     L++L  
Sbjct: 14  QYTNAVRDRELDL-RGYKIPV--IENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKT 68

Query: 203 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDE 261
           L +    +         AL  L  L L    L +    +  + + SL  L +  N +T++
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 128

Query: 262 C------LVHLKGLTNL 272
                  +  +  +  L
Sbjct: 129 KHYRLYVIYKVPQVRVL 145

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.7 bits (149), Expect = 3e-10
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 13/190 (6%)

Query: 170 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 229
           L     L+ L+        + I  ++ L  L          T     +L A+  +    L
Sbjct: 368 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKE-----TLQYFSTLKAVDPMRAAYL 422

Query: 230 NRCQLSDDGCEKFSKI--GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 287
           +  +          K+    ++VL+L   ++T   L HL+ L  +  L+L    +     
Sbjct: 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRL-RALP 479

Query: 288 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKS 346
             L  L  L+ L+ SD  + +  +  ++ L  L+ + L    +    +++ L     L  
Sbjct: 480 PALAALRCLEVLQASDNALEN--VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537

Query: 347 LNLDARQITD 356
           LNL    +  
Sbjct: 538 LNLQGNSLCQ 547

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.4 bits (143), Expect = 1e-09
 Identities = 47/262 (17%), Positives = 89/262 (33%), Gaps = 50/262 (19%)

Query: 239 CEKFSKIGSLKVLNLGFNEIT--DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 296
           C   +    L    L   + T     L   K L  LE          +     LT +  +
Sbjct: 342 CRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEP---------ENKWCLLTIILLM 392

Query: 297 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-----SLKSLNLDA 351
           + L+          L++ S L  ++ +  ++             +       ++ L+L  
Sbjct: 393 RALDPL--LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAH 450

Query: 352 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 411
           + +T   L  L  L  +THLDL              +   LR+L              + 
Sbjct: 451 KDLTV--LCHLEQLLLVTHLDL--------------SHNRLRALP-----------PALA 483

Query: 412 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLKPLKNLRSLTL 470
            L  L +L  S N  L    ++ ++ L  L  L + N+R+   A ++ L     L  L L
Sbjct: 484 ALRCLEVLQASDN-ALE--NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540

Query: 471 ESCKVTANDIKRLQSRD-LPNL 491
           +   +   +  + +  + LP++
Sbjct: 541 QGNSLCQEEGIQERLAEMLPSV 562

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 28/151 (18%), Positives = 58/151 (38%), Gaps = 19/151 (12%)

Query: 71  LKDCSNLQSLDF-------NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 123
           L+  S L+++D        +   +            +++  L    +  +T   +     
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA-HKDLTV--LCHLEQ 461

Query: 124 LINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 181
           L+ +  LDL   R   +   L  L+    LE L     N + +  +  ++ L  L+ L +
Sbjct: 462 LLLVTHLDLSHNRLRALPPALAALR---CLEVLQAS-DNALEN--VDGVANLPRLQELLL 515

Query: 182 SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVT 211
             +++   + I  L    +L LLNL+G  + 
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.2 bits (146), Expect = 5e-10
 Identities = 46/304 (15%), Positives = 86/304 (28%), Gaps = 64/304 (21%)

Query: 100 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGLMKLESLNI 156
            N   L F     +      AF+G  +L K+++ +      I   +     L KL  + I
Sbjct: 30  RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV--FSNLPKLHEIRI 86

Query: 157 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP----VTA 212
           +  N +   + +    L NL+ L IS + +      +     +  LL+++       +  
Sbjct: 87  EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146

Query: 213 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 272
                LS       L LN+  + +     F+     ++     N +              
Sbjct: 147 NSFVGLSFE--SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE------------- 191

Query: 273 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 332
             L  D                                     G +    +++S T I  
Sbjct: 192 -ELPNDV----------------------------------FHGASGPVILDISRTRIHS 216

Query: 333 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 392
                L  L  L++ +     +    L  L  L  L    L       + A + R    L
Sbjct: 217 LPSYGLENLKKLRARST--YNLKK--LPTLEKLVALMEASLTYPSHCCAFANWRRQISEL 272

Query: 393 RSLE 396
             + 
Sbjct: 273 HPIC 276

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.2 bits (146), Expect = 5e-10
 Identities = 36/257 (14%), Positives = 78/257 (30%), Gaps = 37/257 (14%)

Query: 75  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 134
            N   L F    ++         G  +L  +   +N+ +       F+ L  L ++ +E+
Sbjct: 30  RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 135 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 194
                                    N +   + +    L NL+ L IS + +      + 
Sbjct: 89  ------------------------ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 124

Query: 195 KGLQKLTLLNLEGCP----VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 250
               +  LL+++       +       LS       L LN+  + +     F+     ++
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFE--SVILWLNKNGIQEIHNSAFNGTQLDEL 182

Query: 251 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSS 309
                N + +       G +    L++    I       L  L  L+     +  ++ + 
Sbjct: 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPT- 241

Query: 310 GLRHLSGLTNLESINLS 326
               L  L  L   +L+
Sbjct: 242 ----LEKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 39/233 (16%), Positives = 75/233 (32%), Gaps = 12/233 (5%)

Query: 200 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNE 257
              L      +      + S  G L  + +++   L     + FS +  L  + +   N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 258 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD----TQVGSSGLRH 313
           +        + L NL+ L + + GI     V+         L++ D      +  +    
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151

Query: 314 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 373
           LS       + L+  GI +       G    +    D   + +         +G   LD+
Sbjct: 152 LS--FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209

Query: 374 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 426
              RI    +  L N K LR+       L       ++ L +L   +L+   +
Sbjct: 210 SRTRIHSLPSYGLENLKKLRARST--YNLKKLPT--LEKLVALMEASLTYPSH 258

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 43/233 (18%), Positives = 72/233 (30%), Gaps = 39/233 (16%)

Query: 247 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-------EGLVNLTGLCNLKCL 299
           +   L     ++         G  +LE + +    + +         L  L  +   K  
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 300 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTG 358
            L               L NL+ + +S TGI                L++ D   I    
Sbjct: 91  NLLYINPE-----AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145

Query: 359 LAALTSLTG-LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 417
             +   L+     L L    I +                               + + L 
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQEIHN-------------------------SAFNGTQLD 180

Query: 418 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 470
            LNLS N NL +   ++  G +G V L++S +RI S     L+ LK LR+ + 
Sbjct: 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 267 KGLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 325
           +  ++++ L LD+    +  L  LT     L+ L   +  + S  + +L  L  L+ + L
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLEL 71

Query: 326 SFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFG 375
           S   +S G         +L  LNL   +I D + +  L  L  L  LDLF 
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 195 KGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 253
           +    +  L L+        L+ L      L +L+     L+        K+  LK L L
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLEL 71

Query: 254 GFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSD 303
             N ++    V  +   NL  LNL    I D   +  L  L NLK L+L +
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 8/118 (6%)

Query: 97  RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESL 154
           R  S++  L    + +   +          L  L       T I     NL  L KL+ L
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA----NLPKLNKLKKL 69

Query: 155 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVT 211
            +   N ++           NL  L +S +K+ D S I  LK L+ L  L+L  C VT
Sbjct: 70  ELS-DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 5/115 (4%)

Query: 364 SLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 422
           + + +  L L  +R  +         F+ L  L     GLT   + ++  L+ L  L LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLELS 72

Query: 423 QNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLKPLKNLRSLTLESCKVT 476
            N  ++     L      L  LN+S ++I   + +  LK L+NL+SL L +C+VT
Sbjct: 73  DN-RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 7/109 (6%)

Query: 387 RNFKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 445
           R   +++ L +      +  ++ + D    L  L+   N  LT   +  +  L  L  L 
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTI-NVGLTS--IANLPKLNKLKKLE 70

Query: 446 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTA-NDIKRLQSRDLPNLVS 493
           +S++R++       +   NL  L L   K+   + I+ L  + L NL S
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL--KKLENLKS 117

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 18/132 (13%)

Query: 342 SSLKSLNL-DARQITDTGLA----ALTSLTGLTHLDLFGARITDSGAAY----LRNFKNL 392
             L+ +NL +   I    L     AL + T +    + G R  D  A      L+    L
Sbjct: 36  PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95

Query: 393 RSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCN-LTDKTLELISGL----TGLVS 443
           +SL +    ++ +G+  +    +  +SL  L +      L +     I+ +    T L+ 
Sbjct: 96  KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLK 155

Query: 444 LNVSNSRITSAG 455
                ++     
Sbjct: 156 FGYHFTQQGPRL 167

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 24/138 (17%), Positives = 45/138 (32%), Gaps = 19/138 (13%)

Query: 266 LKGLTNLESLNL-DSCGIGDEGLVNL-TGLCN---LKCLELSDTQVGSSGLRHLSGL--- 317
                +LE +NL +   I    L      L     +K   +  T+        L+ +   
Sbjct: 32  QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKV 91

Query: 318 -TNLESINLSFTGISDGSLRKLA-GL---SSLKSLNLDAR--QITDTGLAALTSL----T 366
              L+S+N+    IS   +  L   L   +SL  L +D +   + +     + ++    T
Sbjct: 92  NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNT 151

Query: 367 GLTHLDLFGARITDSGAA 384
            L        +      A
Sbjct: 152 TLLKFGYHFTQQGPRLRA 169

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 51.5 bits (124), Expect = 7e-08
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 21/130 (16%)

Query: 223 SLFYLNLNR-CQLSDDGCEKFSKI----GSLKVLNLGFNEITDECLVH----LKGLTNLE 273
            L  +NLN    +     +  ++       +K  ++      D         LK    L+
Sbjct: 37  DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLK 96

Query: 274 SLNLDSCGIGDEGLVNL-------TGLCNLKCLELSDTQVGSSGLRHLSGL----TNLES 322
           SLN++S  I   G++ L       T L  L+ ++     +G++    ++ +    T L  
Sbjct: 97  SLNVESNFISGSGILALVEALQSNTSLIELR-IDNQSQPLGNNVEMEIANMLEKNTTLLK 155

Query: 323 INLSFTGISD 332
               FT    
Sbjct: 156 FGYHFTQQGP 165

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 19/146 (13%)

Query: 299 LELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGL----SSLKSLNLDARQ 353
            E + T V  +  R  +   +LE +NL+    I   +L+  A      + +K  ++   +
Sbjct: 17  EEPNSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR 76

Query: 354 ITDTG---LA-ALTSLTGLTHLDLFGARITDSGAAYLRNF----KNLRSLEI--CGGGLT 403
             D     LA  L     L  L++    I+ SG   L        +L  L I      L 
Sbjct: 77  SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136

Query: 404 DAGVKHIKDL----SSLTLLNLSQNC 425
           +     I ++    ++L         
Sbjct: 137 NNVEMEIANMLEKNTTLLKFGYHFTQ 162

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 25/170 (14%), Positives = 49/170 (28%), Gaps = 47/170 (27%)

Query: 100 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 159
            +L  ++      I    +KA A                      LK    ++  +I   
Sbjct: 36  PDLEEVNLNNIMNIPVPTLKACAEA--------------------LKTNTYVKKFSIVG- 74

Query: 160 NCITDSDMKPLSGL----TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 215
               D     L+ +      LKSL +  + ++ SGI  L                    L
Sbjct: 75  TRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL-----------------VEAL 117

Query: 216 DSLSALGSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITDE 261
            S ++L  L  ++     L ++   + + +     +L      F +    
Sbjct: 118 QSNTSLIEL-RIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 4/114 (3%)

Query: 269 LTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 327
              +  L LD+C   D  +  LT    NL+ L L +  + S  + +L  L  L+ + LS 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELSE 80

Query: 328 TGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITD 380
             I  G       L +L  LNL   ++ D   L  L  L  L  LDLF   +T+
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 4/112 (3%)

Query: 173 LTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 231
              ++ L +   K  D  I  L      L  L+L    +    + +L  L  L  L L+ 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELSE 80

Query: 232 CQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGI 282
            ++         K+ +L  LNL  N++ D   L  LK L  L+SL+L +C +
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 4/109 (3%)

Query: 197 LQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 255
              +  L L+ C      ++ L +   +L +L+L    L         K+  LK L L  
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELSE 80

Query: 256 NEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSD 303
           N I     +  + L NL  LNL    + D   L  L  L  LK L+L +
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 6/138 (4%)

Query: 340 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 399
           G S    +++  R   +       ++  L  LD   +            F NL  L +  
Sbjct: 1   GSSGSSGMDMKRRIHLELRNRTPAAVRELV-LDNCKSNDG-KIEGLTAEFVNLEFLSLIN 58

Query: 400 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRH 458
            GL    V ++  L  L  L LS+N  +      L   L  L  LN+S +++   + L  
Sbjct: 59  VGLIS--VSNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP 115

Query: 459 LKPLKNLRSLTLESCKVT 476
           LK L+ L+SL L +C+VT
Sbjct: 116 LKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 4/116 (3%)

Query: 97  RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 156
           R  + +  L      +   +     A  +NL  L L     +   + NL  L KL+ L +
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLIS-VSNLPKLPKLKKLEL 78

Query: 157 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVT 211
              N I          L NL  L +S +K+ D S +  LK L+ L  L+L  C VT
Sbjct: 79  S-ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 5/133 (3%)

Query: 227 LNLNRCQLSDDGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 285
           L L+ C+ +D   E   ++  +L+ L+L    +    + +L  L  L+ L L    I   
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELSENRIFGG 86

Query: 286 GLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 344
             +    L NL  L LS  ++   S L  L  L  L+S++L    +++ +  + +    L
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146

Query: 345 KSLN-LDARQITD 356
             L  LD     D
Sbjct: 147 PQLTYLDGYDRED 159

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 7/109 (6%)

Query: 387 RNFKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 445
           R    +R L +      D  ++ +     +L  L+L  N  L    +  +  L  L  L 
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLI-NVGLIS--VSNLPKLPKLKKLE 77

Query: 446 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTA-NDIKRLQSRDLPNLVS 493
           +S +RI        + L NL  L L   K+   + ++ L  + L  L S
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPL--KKLECLKS 124

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 35/145 (24%), Positives = 56/145 (38%), Gaps = 12/145 (8%)

Query: 70  HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 129
                +  + ++ +  I   +     L  L     L+    N I    + + +G+ NL  
Sbjct: 18  KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALS-TNNIEK--ISSLSGMENLRI 74

Query: 130 LDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 187
           L L R    +I            LE L I   N I  + +  +  L NL+ L +S +K+T
Sbjct: 75  LSLGRNLIKKIENLDAVAD---TLEELWIS-YNQI--ASLSGIEKLVNLRVLYMSNNKIT 128

Query: 188 D-SGIAYLKGLQKLTLLNLEGCPVT 211
           +   I  L  L KL  L L G P+ 
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.6 bits (124), Expect = 9e-08
 Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 16/150 (10%)

Query: 217 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN-LESL 275
           +LS L +  +L L+   +        S + +L++L+LG N I    + +L  + + LE L
Sbjct: 43  TLSTLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEEL 98

Query: 276 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGS 334
            +    I    L  +  L NL+ L +S+ ++ +   +  L+ L  LE + L+   + +  
Sbjct: 99  WISYNQIAS--LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156

Query: 335 LRKLAG-------LSSLKSLN-LDARQITD 356
               A        +  L +L  LD   +  
Sbjct: 157 KENNATSEYRIEVVKRLPNLKKLDGMPVDV 186

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 8/113 (7%)

Query: 289 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSL 347
            L+ L   K L LS   +    +  LSG+ NL  ++L    I    +L  +    +L+ L
Sbjct: 43  TLSTLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIKKIENLDAV--ADTLEEL 98

Query: 348 NLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICG 399
            +   QI    L+ +  L  L  L +   +IT+      L     L  L + G
Sbjct: 99  WISYNQIAS--LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 20/157 (12%)

Query: 346 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTD 404
            L+     I     A L++L    HL L    I   S    L   +NLR L +    +  
Sbjct: 29  ELHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEKISS---LSGMENLRILSLGRNLIKK 84

Query: 405 AGVKHIKDLS-SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLKPL 462
             ++++  ++ +L  L +S N  +    L  I  L  L  L +SN++IT+   +  L  L
Sbjct: 85  --IENLDAVADTLEELWISYN-QIAS--LSGIEKLVNLRVLYMSNNKITNWGEIDKLAAL 139

Query: 463 KNLRSLTLESCKVTANDIKRLQSRD--------LPNL 491
             L  L L    +  +  +   + +        LPNL
Sbjct: 140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 46/283 (16%), Positives = 90/283 (31%), Gaps = 27/283 (9%)

Query: 93  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT---RIHGGLVNLKGLM 149
           +E   G  +L  L  R +              ++L +L +       RI  G + + G+ 
Sbjct: 36  VELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGIS 95

Query: 150 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG------LQKLTLL 203
            L+ L ++    +T +   PL   T      ++   V+ +                L +L
Sbjct: 96  GLQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL 154

Query: 204 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC-------EKFSKIGSLKVLNLGFN 256
           ++          + +    +L  L+L+      +          KF  +  L + N G  
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

Query: 257 EITDECLVHLKGLTNLESLNLDSCGI-GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 315
             +  C         L+ L+L    +    G  +      L  L LS T      L+ + 
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-----LKQVP 269

Query: 316 G--LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 356
                 L  ++LS+  +          L  + +L+L      D
Sbjct: 270 KGLPAKLSVLDLSYNRLD--RNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 45/249 (18%), Positives = 77/249 (30%), Gaps = 27/249 (10%)

Query: 223 SLFYLNLNRCQLSDDGCEKFSKIGS---LKVLNLGFNEITDECLVHLKGLT--NLESLNL 277
           SL  L +   ++         ++     L+ L L   E+T      L   T  +L  LNL
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 278 DSCGIGDEGL----VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 333
            +            +       LK L ++     +     +     L +++LS       
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 334 S-------LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAY 385
                     K   L  L   N      +    A   +   L  LDL    + D+ GA  
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

Query: 386 LRNFKNLRSLEICGGGLTDAGVKHIKD--LSSLTLLNLSQNCNLTDKTLELISGLTGLVS 443
                 L SL +   GL       +     + L++L+LS N  L          L  + +
Sbjct: 249 CDWPSQLNSLNLSFTGLK-----QVPKGLPAKLSVLDLSYN-RLD--RNPSPDELPQVGN 300

Query: 444 LNVSNSRIT 452
           L++  +   
Sbjct: 301 LSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 39/222 (17%), Positives = 64/222 (28%), Gaps = 28/222 (12%)

Query: 242 FSKIGSLKVLNLGFNEITDECLVHLK---GLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 298
             K  SLK L +    I    L       G++ L+ L L++  +       L        
Sbjct: 64  IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL 123

Query: 299 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 358
             L+        LR++S  T    +      +             LK L++      +  
Sbjct: 124 NILN--------LRNVSWATRDAWLAELQQWL----------KPGLKVLSIAQAHSLNFS 165

Query: 359 LAALTSLTGLTHLDL----FGARITDSGAAYLRNFKNLRSLEICGGGLT---DAGVKHIK 411
              +     L+ LDL             A     F  L+ L +   G+            
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225

Query: 412 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 453
               L  L+LS N              + L SLN+S + +  
Sbjct: 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.8 bits (111), Expect = 7e-06
 Identities = 49/246 (19%), Positives = 84/246 (34%), Gaps = 20/246 (8%)

Query: 149 MKLESLNIKWCNCITDSDMKPLSGLTNL--KSLQISCSKVTDSGIAYLKGLQKLTLLNLE 206
           + + +  I          +  +SGL  L  ++L+++ +       A    L  L L N+ 
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 207 GCPVTAACLDSLSALG-SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE---- 261
                A   +    L   L  L++ +    +  CE+     +L  L+L  N    E    
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192

Query: 262 ---CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGL 317
              C +    L  L   N                   L+ L+LS      ++G       
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

Query: 318 TNLESINLSFTGIS--DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 375
           + L S+NLSFTG+      L      + L  L+L   ++      +   L  + +L L G
Sbjct: 253 SQLNSLNLSFTGLKQVPKGL-----PAKLSVLDLSYNRLD--RNPSPDELPQVGNLSLKG 305

Query: 376 ARITDS 381
               DS
Sbjct: 306 NPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 34/180 (18%), Positives = 61/180 (33%), Gaps = 13/180 (7%)

Query: 301 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 360
            +D    +  ++ LS L  L                ++ G+S L+ L L+  ++T T   
Sbjct: 55  EADLGQFTDIIKSLS-LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113

Query: 361 ALTSLTG--LTHLDLFGARITDSGAAYLRNF----KNLRSLEICGGGLTDAGVKHIKDLS 414
            L   TG  L  L+L         A            L+ L I      +   + ++   
Sbjct: 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173

Query: 415 SLTLLNLSQNCNLTDKTLE---LISGLTGLVSLNVSNSRITS---AGLRHLKPLKNLRSL 468
           +L+ L+LS N  L ++ L           L  L + N+ + +              L+ L
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 27/155 (17%), Positives = 46/155 (29%), Gaps = 28/155 (18%)

Query: 247 SLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGD------EGLVNLT-------- 291
              +L+L  N ++          LTNL SL L    +          + NL         
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99

Query: 292 ----------GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKL 338
                      L  L+ L L +  +          +  L+ + LS    +      ++  
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159

Query: 339 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 373
             L  L  L+L + ++    L  L  L       L
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 37/156 (23%), Positives = 57/156 (36%), Gaps = 11/156 (7%)

Query: 80  LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TR 137
           L  N   ++          L+NL SL    +N +     +AF  + NL  LDL       
Sbjct: 46  LSHNNLSRLRAEWT--PTRLTNLHSLLLS-HNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102

Query: 138 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT---DSGIAYL 194
           +   L     L  LE L + + N I   D      +  L+ L +S ++++      I   
Sbjct: 103 LDEFL--FSDLQALEVLLL-YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159

Query: 195 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 230
             L KL LL+L    +    L  L  L +     L 
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 33/184 (17%), Positives = 56/184 (30%), Gaps = 32/184 (17%)

Query: 100 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIK 157
           S    L    NN    +       L NL  L L       I                   
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA--------------- 83

Query: 158 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 217
                          + NL+ L +S + +          LQ L +L L    +     ++
Sbjct: 84  ------------FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA 131

Query: 218 LSALGSLFYLNLNRCQLS---DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 274
              +  L  L L++ Q+S    +  +  +K+  L +L+L  N++    L  L+ L     
Sbjct: 132 FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

Query: 275 LNLD 278
             L 
Sbjct: 192 NGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 37/162 (22%), Positives = 58/162 (35%), Gaps = 14/162 (8%)

Query: 342 SSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARIT--DSGAAYLRNFKNLRSLEIC 398
           S    L+L    ++        T LT L  L L    +    S A       NLR L++ 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA--FVPVPNLRYLDLS 96

Query: 399 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS---AG 455
              L         DL +L +L L  N ++          +  L  L +S ++I+      
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155

Query: 456 LRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 497
           ++    L  L  L L S     N +K+L   DL  L ++   
Sbjct: 156 IKDGNKLPKLMLLDLSS-----NKLKKLPLTDLQKLPAWVKN 192

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 5e-08
 Identities = 66/356 (18%), Positives = 108/356 (30%), Gaps = 79/356 (22%)

Query: 168 KPLSGLTN-LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS--LSAL-GS 223
           +P   L   L  L+     V   G   + G  K  +           CL       +   
Sbjct: 135 QPYLKLRQALLELR-PAKNVLIDG---VLGSGKTWV-------ALDVCLSYKVQCKMDFK 183

Query: 224 LFYLNLNRC---------------QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 268
           +F+LNL  C               Q+  +   +     ++K   L  + I  E    LK 
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK---LRIHSIQAELRRLLKS 240

Query: 269 LTNLESL-NLDSCGIGDEGLVNLTGLCNLKCLEL---SDTQV----GSSGLRHLSGLTNL 320
                 L  L    + +    N     NL C  L      QV     ++   H+S    L
Sbjct: 241 KPYENCLLVLL--NVQNAKAWNAF---NLSCKILLTTRFKQVTDFLSAATTTHIS----L 291

Query: 321 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 380
           +  +++ T   D     L      K L+   +      L      T    L +    I D
Sbjct: 292 DHHSMTLT--PDEVKSLLL-----KYLDCRPQD-----LPREVLTTNPRRLSIIAESIRD 339

Query: 381 SGAAYLRNFKNL------RSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE 433
            G A   N+K++        +E     L  A  + +   LS         + ++    L 
Sbjct: 340 -GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-----FPPSAHIPTILLS 393

Query: 434 LI--SGLTGLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCKVTANDIKRLQSR 486
           LI    +   V + V+     S   +  K    ++ S+ LE  KV   +   L   
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL-KVKLENEYALHRS 448

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 42/237 (17%), Positives = 80/237 (33%), Gaps = 49/237 (20%)

Query: 247 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG----IGDEGLVNLTGLCNLKCLELS 302
           S + L L    +          L N+  + +        +      NL+    +  +E+ 
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS---KVTHIEIR 88

Query: 303 DTQVGSSGLRHLS-----GLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNL-DARQIT 355
           +T+     L ++       L  L+ + +  TG+     L K+        L + D   +T
Sbjct: 89  NTR----NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 356 DTGLAALTSLTGLT-HLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 412
              + A   L   T  L L+    T     A     F                      +
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFTSVQGYA-----F----------------------N 177

Query: 413 LSSLTLLNLSQNCNLTDKTLELISGL-TGLVSLNVSNSRITSAGLRHLKPLKNLRSL 468
            + L  + L++N  LT    +   G+ +G   L+VS + +T+   + L+ LK L + 
Sbjct: 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 34/210 (16%), Positives = 74/210 (35%), Gaps = 22/210 (10%)

Query: 200 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEI 258
              L L    +      + S L ++  + ++    L       F  +  +  + +     
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 259 TDECLVHL-----KGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSD-TQVGSSGL 311
               L ++     K L  L+ L + + G+     L  +        LE++D   + S  +
Sbjct: 93  ----LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 312 RHLSGLTN-LESINLS---FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL- 365
               GL N   ++ L    FT +   +       + L ++ L+  + +T     A   + 
Sbjct: 149 NAFQGLCNETLTLKLYNNGFTSVQGYAFN----GTKLDAVYLNKNKYLTVIDKDAFGGVY 204

Query: 366 TGLTHLDLFGARITDSGAAYLRNFKNLRSL 395
           +G + LD+    +T   +  L + K L + 
Sbjct: 205 SGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 38/213 (17%), Positives = 73/213 (34%), Gaps = 14/213 (6%)

Query: 75  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 134
            + Q+L       +          L N++ +    +  +      +F  L  +  +++  
Sbjct: 31  PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 135 C---TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSG 190
               T I      LK L  L+ L I         D+  +        L+I+    +T   
Sbjct: 90  TRNLTYIDPDA--LKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 191 IAYLKGLQKLTL-LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK-FSKIGS- 247
           +   +GL   TL L L     T+    + +    L  + LN+ +      +  F  + S 
Sbjct: 148 VNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFGGVYSG 206

Query: 248 LKVLNLGFNEIT---DECLVHLKGLTNLESLNL 277
             +L++    +T    + L HLK L    +  L
Sbjct: 207 PSLLDVSQTSVTALPSKGLEHLKELIARNTWTL 239

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 21/143 (14%), Positives = 43/143 (30%), Gaps = 7/143 (4%)

Query: 354 ITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK 411
           +T   +  + SL      L L    +    +    N  N+  + +     L         
Sbjct: 18  VTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY 77

Query: 412 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLKPLKNLRSLTL 470
           +LS +T + +    NLT    + +  L  L  L + N+ +     L  +        L +
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI 137

Query: 471 ESCKVTANDIKRLQSRDLPNLVS 493
                    +  +       L +
Sbjct: 138 TD----NPYMTSIPVNAFQGLCN 156

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 44/246 (17%), Positives = 82/246 (33%), Gaps = 32/246 (13%)

Query: 227 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG--LTNLESLNLDSCGIGD 284
            N     +S    + FS     +   L   E  +E +  LK   +     L L+   +  
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQAL-PGENRNEAVSLLKECLINQFSELQLNRLNLSS 73

Query: 285 EGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSS 343
              +       +  LE++        L  L     +LE ++     +S  +L +L   +S
Sbjct: 74  ---LPDNLPPQITVLEITQNA-----LISLPELPASLEYLDACDNRLS--TLPEL--PAS 121

Query: 344 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 403
           LK L++D  Q+T            L +++    ++T           +L  L +    LT
Sbjct: 122 LKHLDVDNNQLTMLP----ELPALLEYINADNNQLTMLPEL----PTSLEVLSVRNNQLT 173

Query: 404 DAGVKHIKDLSSLTLLNLSQNC--NLTDKTLELISGLTGLVSLNVSNSRITS--AGLRHL 459
                  +   SL  L++S N   +L    +         +      +RIT     +  L
Sbjct: 174 FL----PELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSL 229

Query: 460 KPLKNL 465
            P   +
Sbjct: 230 DPTCTI 235

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.2 bits (104), Expect = 8e-05
 Identities = 47/288 (16%), Positives = 96/288 (33%), Gaps = 48/288 (16%)

Query: 100 SNLTSLS-FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIK 157
           +N  SLS     N I+      F+      K  L    R     L+    + +   L + 
Sbjct: 8   NNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLN 67

Query: 158 WCNCITDSDMKPLSGLTNLKSLQISCSKVT---DSGIAYLKGLQKLTLLNLEGCPVTAAC 214
               ++     P +    +  L+I+ + +    +        L+ L   +          
Sbjct: 68  -RLNLSSL---PDNLPPQITVLEITQNALISLPEL----PASLEYLDACDNR-------- 111

Query: 215 LDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 273
           L +L     SL +L+++  QL+            L+ +N   N++T   L  L   T+LE
Sbjct: 112 LSTLPELPASLKHLDVDNNQLTMLP----ELPALLEYINADNNQLT--MLPEL--PTSLE 163

Query: 274 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL----SGLTNLESINLSFTG 329
            L++ +  +    L  L    +L+ L++S        L  L        + E   + F  
Sbjct: 164 VLSVRNNQLTF--LPEL--PESLEALDVSTNL-----LESLPAVPVRNHHSEETEIFF-R 213

Query: 330 ISDGSLRKL----AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 373
             +  +  +      L    ++ L+   ++     +L+  T       
Sbjct: 214 CRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 37/151 (24%), Positives = 55/151 (36%), Gaps = 9/151 (5%)

Query: 226 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 285
            L+L+   L             L  LNL   E+T   L     L  L +L+L    +   
Sbjct: 35  ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQLQSL 92

Query: 286 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLS 342
            L+    L  L  L++S  ++ S  L  L GL  L+ + L       +  G L       
Sbjct: 93  PLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP---TP 148

Query: 343 SLKSLNLDARQITDTGLAALTSLTGLTHLDL 373
            L+ L+L    +T+     L  L  L  L L
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 38/158 (24%), Positives = 60/158 (37%), Gaps = 9/158 (5%)

Query: 270 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 329
            +   L+L    +    L  L     L  L L   ++    L+    L  L +++LS   
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQ 88

Query: 330 ISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 388
           +   SL      L +L  L++   ++T   L AL  L  L  L L G  +       L  
Sbjct: 89  LQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 389 FKNLRSLEICGGGLTD--AGVKHIKDLSSLTLLNLSQN 424
              L  L +    LT+  AG+  +  L +L  L L +N
Sbjct: 147 TPKLEKLSLANNNLTELPAGL--LNGLENLDTLLLQEN 182

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 15/181 (8%)

Query: 318 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 377
            +   ++LS   +   SL  L   + L  LNLD  ++T   L    +L  L  LDL   +
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQ 88

Query: 378 ITDSGAAYLRNFKNLRSLEICGGGLTD--AGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 435
           +  S     +    L  L++    LT    G   ++ L  L  L L  N  L      L+
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGA--LRGLGELQELYLKGN-ELKTLPPGLL 144

Query: 436 SGLTGLVSLNVSNSRITS------AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 489
           +    L  L+++N+ +T        GL +L  L  L+  +L +          L    L 
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFGSHLLPFAFLH 203

Query: 490 N 490
            
Sbjct: 204 G 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 39/180 (21%), Positives = 67/180 (37%), Gaps = 29/180 (16%)

Query: 100 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 159
            + T L    N  +    +        L +L+L+R               +L  L +   
Sbjct: 31  KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRA--------------ELTKLQVDG- 74

Query: 160 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 219
                        L  L +L +S +++  S     + L  LT+L++    +T+  L +L 
Sbjct: 75  ------------TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 220 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 279
            LG L  L L   +L        +    L+ L+L  N +T+     L GL NL++L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 10/175 (5%)

Query: 226 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-- 283
            L+L   +LS    + F ++  L++L L  N++        K L NLE+L +    +   
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100

Query: 284 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAG 340
             G+     L NL  L L   Q+ S   R    LT L  ++L       +  G   KL  
Sbjct: 101 PIGV--FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL-- 156

Query: 341 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 395
            +SLK L L   Q+      A   LT L  L L   ++         + + L+ L
Sbjct: 157 -TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 41/185 (22%), Positives = 59/185 (31%), Gaps = 34/185 (18%)

Query: 196 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 255
            L KL LL L    +          L +L  L +   +L       F ++ +L  L L  
Sbjct: 59  RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118

Query: 256 NEITDECLVHL-----KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 310
           N++       L       LT L  L+L            L  L                G
Sbjct: 119 NQLK-----SLPPRVFDSLTKLTYLSLGYN--------ELQSL--------------PKG 151

Query: 311 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 370
           +     LT+L+ + L    +          L+ LK+L LD  Q+      A  SL  L  
Sbjct: 152 V--FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209

Query: 371 LDLFG 375
           L L  
Sbjct: 210 LQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 47/206 (22%), Positives = 73/206 (35%), Gaps = 35/206 (16%)

Query: 270 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-----GLTNLESIN 324
            + + L+L S  +          L  L+ L L+D +     L+ L       L NLE++ 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-----LQTLPAGIFKELKNLETLW 91

Query: 325 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 384
           ++   +    +     L +L  L LD  Q+         SLT LT+L L    +      
Sbjct: 92  VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ----- 146

Query: 385 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 444
                    SL          GV     L+SL  L L  N  L          LT L +L
Sbjct: 147 ---------SLP--------KGV--FDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTL 186

Query: 445 NVSNSRITSAGLRHLKPLKNLRSLTL 470
            + N+++          L+ L+ L L
Sbjct: 187 KLDNNQLKRVPEGAFDSLEKLKMLQL 212

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 10/178 (5%)

Query: 318 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 377
            + + ++L    +S    +    L+ L+ L L+  ++          L  L  L +   +
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 378 ITDSGAAYLRNFKNLRSLEICGGGLTD--AGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 435
           +            NL  L +    L      V     L+ LT L+L  N  L      + 
Sbjct: 97  LQALPIGVFDQLVNLAELRLDRNQLKSLPPRV--FDSLTKLTYLSLGYN-ELQSLPKGVF 153

Query: 436 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 493
             LT L  L + N+++          L  L++L L++     N +KR+      +L  
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN-----NQLKRVPEGAFDSLEK 206

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 42/174 (24%), Positives = 65/174 (37%), Gaps = 9/174 (5%)

Query: 110 NNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 167
           +N +++   KAF  L  L  L L       +  G+     L  LE+L +   N +    +
Sbjct: 46  SNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK--ELKNLETLWVTD-NKLQALPI 102

Query: 168 KPLSGLTNLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 225
                L NL  L++  +++      +     L KLT L+L    + +        L SL 
Sbjct: 103 GVFDQLVNLAELRLDRNQLKSLPPRV--FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160

Query: 226 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 279
            L L   QL       F K+  LK L L  N++          L  L+ L L  
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 36/166 (21%), Positives = 53/166 (31%), Gaps = 14/166 (8%)

Query: 97  RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC------TRIHGGLVNLKGLMK 150
             L+ L  L    +N +       F  L NL  L +           +   LVNL  L  
Sbjct: 58  HRLTKLRLLYLN-DNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL-- 114

Query: 151 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 210
              L+    N +     +    LT L  L +  +++          L  L  L L    +
Sbjct: 115 --RLD---RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169

Query: 211 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 256
                 +   L  L  L L+  QL       F  +  LK+L L  N
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.9 bits (117), Expect = 9e-07
 Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 11/135 (8%)

Query: 247 SLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSD 303
               L L  NE T  E     K L  L  +N  +  I D  EG     G   +  + L+ 
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA--FEGASGVNEILLTS 90

Query: 304 TQVGSSGLRHLSGLTNLESINLSF---TGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 360
            ++ +   +   GL +L+++ L     T + + S      LSS++ L+L   QIT     
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG---LSSVRLLSLYDNQITTVAPG 147

Query: 361 ALTSLTGLTHLDLFG 375
           A  +L  L+ L+L  
Sbjct: 148 AFDTLHSLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 11/131 (8%)

Query: 79  SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCT 136
            L+ N    +   G+   + L  L  ++F  NN IT     AF G   + ++ L   R  
Sbjct: 38  RLNNNEFTVLEATGI--FKKLPQLRKINFS-NNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 137 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC---SKVTDSGIAY 193
            +   +   KGL  L++L ++  N IT        GL++++ L +     + V       
Sbjct: 95  NVQHKM--FKGLESLKTLMLR-SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 194 LKGLQKLTLLN 204
           L  L  L LL 
Sbjct: 152 LHSLSTLNLLA 162

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 40/159 (25%), Positives = 61/159 (38%), Gaps = 20/159 (12%)

Query: 227 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS------- 279
           L+L    L+      F  +  L  LNL +N++          LT L +L L +       
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 280 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLR 336
            G+ D        L  L  L L   Q+ S        LT L+ + L+      I  G+  
Sbjct: 100 LGVFD-------HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152

Query: 337 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 375
           KL   ++L++L+L   Q+      A   L  L  + LFG
Sbjct: 153 KL---TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 49/247 (19%), Positives = 90/247 (36%), Gaps = 49/247 (19%)

Query: 239 CEKFSKIGSLKVLNLGFNEITDECLV--HLKGLTNLESLNLDSCGIGDEGLVNLTG---- 292
           C+  ++   +  L+L    +     +   L  L  L  L +        G+ NL G    
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI-------GGINNLVGPIPP 95

Query: 293 ----LCNLKCLELSDTQVGSSGL--RHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLK 345
               L  L  L ++ T V  SG     LS +  L +++ S+  +S G+L   ++ L +L 
Sbjct: 96  AIAKLTQLHYLYITHTNV--SGAIPDFLSQIKTLVTLDFSYNALS-GTLPPSISSLPNLV 152

Query: 346 SLNLDARQITDT---GLAALTSL-----------TG----------LTHLDLFGARITDS 381
            +  D  +I+        + + L           TG          L  +DL    +   
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD 212

Query: 382 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 441
            +    + KN + + +    L    +  +    +L  L+L  N  +     + ++ L  L
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFL 270

Query: 442 VSLNVSN 448
            SLNVS 
Sbjct: 271 HSLNVSF 277

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 6/85 (7%)

Query: 74  CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 133
                 L       +    L HL G  NLT L       +    ++   GL  L  L + 
Sbjct: 7   PHGSSGLRCTRDGALDS--LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 134 RC--TRIHGGLVNLKGLMKLESLNI 156
           +     +           +L  LN+
Sbjct: 65  KSGLRFVAPDA--FHFTPRLSRLNL 87

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 11/89 (12%)

Query: 295 NLKCLELSDTQVGSSGLRHLSGLTNLESINLS----FTGISDGSLRKLAGLSSLKSLNLD 350
            L+C            L HL G  NL  + +        +    LR   GL  L++L + 
Sbjct: 12  GLRCTRDGALDS----LHHLPGAENLTELYIENQQHLQHLELRDLR---GLGELRNLTIV 64

Query: 351 ARQITDTGLAALTSLTGLTHLDLFGARIT 379
              +      A      L+ L+L    + 
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 398 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 457
           C        + H+    +LT L +    +L    L  + GL  L +L +  S +      
Sbjct: 15  CTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74

Query: 458 HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 491
                  L  L L       N ++ L  + +  L
Sbjct: 75  AFHFTPRLSRLNLSF-----NALESLSWKTVQGL 103

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 4/99 (4%)

Query: 66  SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 125
             L HL    NL  L       +    L  LRGL  L +L+    + +      AF    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI-VKSGLRFVAPDAFHFTP 80

Query: 126 NLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKW-CNC 161
            L +L+L       +    V    L +L        C+C
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSC 119

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 5/134 (3%)

Query: 299 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 358
           + L    +        S    L  I+LS   IS+ +     GL SL SL L   +IT+  
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96

Query: 359 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 418
            +    L  L  L L   +I        ++  NL  L +    L          L ++  
Sbjct: 97  KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156

Query: 419 LNLSQN-----CNL 427
           ++L+QN     C+L
Sbjct: 157 MHLAQNPFICDCHL 170

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 25/155 (16%)

Query: 318 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 377
             +  I L    I        +    L+ ++L   QI++    A   L  L  L L+G  
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-- 89

Query: 378 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 437
                     N   +  L           +   + L SL LL L+ N  +    ++    
Sbjct: 90  ----------N--KITEL--------PKSL--FEGLFSLQLLLLNAN-KINCLRVDAFQD 126

Query: 438 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 472
           L  L  L++ ++++ +       PL+ ++++ L  
Sbjct: 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 34/165 (20%)

Query: 260 DECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 317
           + C+  L+   T+L+ +N+++   +  E + +L                           
Sbjct: 30  ESCINRLREDDTDLKEVNINNMKRVSKERIRSLI--------------------EAACNS 69

Query: 318 TNLESINLSFTGISDGSLRKLAGL----SSLKSLNLDARQITDTGLA----ALTSLTGLT 369
            ++E  +L+ T ISD   R L  L     SL+ LN+++  +T   LA    +      + 
Sbjct: 70  KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIV 129

Query: 370 HLDLFGARITDSGAAYLRNF----KNLRSLEICGGGLTDAGVKHI 410
                  R +  G     +     +   SL   G        +H 
Sbjct: 130 EFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEARHR 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	497
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.98
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.98
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.94
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.94
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.89
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.89
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.87
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.86
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.85
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.85
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.82
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.81
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.81
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.8
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.8
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.79
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.78
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.78
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.77
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.76
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.75
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.75
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.73
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.69
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.64
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.63
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.63
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.61
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.6
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.59
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.59
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.59
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.58
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.58
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.57
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.56
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.56
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.56
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.56
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.56
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.55
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.54
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.54
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.53
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.53
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.53
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.49
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.48
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.46
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.44
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.39
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.39
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.37
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.37
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.37
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.37
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.37
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.34
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.31
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.3
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.26
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.26
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.25
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.25
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.23
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.22
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.2
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.11
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.07
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.03
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.03
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.02
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.0
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.95
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.95
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.73
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.69
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.69
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.63
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.23
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.2
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.13
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.18
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.41
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	83.45

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.9e-46  Score=384.66  Aligned_cols=421  Identities=21%  Similarity=0.201  Sum_probs=192.4

Q ss_pred             hcCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCC
Q 010952           48 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL  127 (497)
Q Consensus        48 ~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L  127 (497)
                      ..+++|++|+++++.+.+..+  +..+++|++|++++| .+....+. ++.+++|++|++++|. +....|..++++++|
T Consensus       175 ~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~~~~~-l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L  249 (768)
T 3rgz_A          175 DGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSN-NFSTGIPF-LGDCSALQHLDISGNK-LSGDFSRAISTCTEL  249 (768)
T ss_dssp             TCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSS-CCCSCCCB-CTTCCSCCEEECCSSC-CCSCHHHHTTTCSSC
T ss_pred             ccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCC-cCCCCCcc-cccCCCCCEEECcCCc-CCCcccHHHhcCCCC
Confidence            446666666666665543221  255666666666665 34332222 5566666666666665 344556666666666


Q ss_pred             CEEeccCccccccccccccCCCCCCEEeccCCC------------------------CCCccccccccCCCCCCEEEeec
Q 010952          128 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN------------------------CITDSDMKPLSGLTNLKSLQISC  183 (497)
Q Consensus       128 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~------------------------~~~~~~~~~l~~l~~L~~L~l~~  183 (497)
                      ++|++++|......+. . .+++|++|++++|.                        .+.+..+..+..+++|++|++++
T Consensus       250 ~~L~Ls~n~l~~~~~~-~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~  327 (768)
T 3rgz_A          250 KLLNISSNQFVGPIPP-L-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS  327 (768)
T ss_dssp             CEEECCSSCCEESCCC-C-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCS
T ss_pred             CEEECCCCcccCccCc-c-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCC
Confidence            6666666532211111 1 34444444444432                        12222333444444444444444


Q ss_pred             cccCchhHH-hhhcCCCCcEEEccCCCCChHHHHHhhCCC-CCcEE--------------------------EcCCCCCC
Q 010952          184 SKVTDSGIA-YLKGLQKLTLLNLEGCPVTAACLDSLSALG-SLFYL--------------------------NLNRCQLS  235 (497)
Q Consensus       184 ~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L--------------------------~l~~~~~~  235 (497)
                      |.+.+..+. .+.++++|++|++++|.+.+..+..+..++ +|+.|                          ++++|.+.
T Consensus       328 n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  407 (768)
T 3rgz_A          328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT  407 (768)
T ss_dssp             SEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE
T ss_pred             CcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc
Confidence            444422222 244444444444444443322222222222 23333                          33333222


Q ss_pred             hhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhc
Q 010952          236 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS  315 (497)
Q Consensus       236 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~  315 (497)
                      +..+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+.
T Consensus       408 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~  487 (768)
T 3rgz_A          408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS  487 (768)
T ss_dssp             EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred             cccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh
Confidence            22233333444444444444433333333334444444444444444333333344444444444444444433334444


Q ss_pred             CCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHh---------
Q 010952          316 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL---------  386 (497)
Q Consensus       316 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---------  386 (497)
                      .+++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..|..+         
T Consensus       488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~  567 (768)
T 3rgz_A          488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA  567 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCC
T ss_pred             cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhh
Confidence            44444444444444444344444444445555554444443333444444555555554444332222111         


Q ss_pred             -------------------------------------------------------------hccCCCCeeeecCCCCChh
Q 010952          387 -------------------------------------------------------------RNFKNLRSLEICGGGLTDA  405 (497)
Q Consensus       387 -------------------------------------------------------------~~~~~L~~L~l~~~~l~~~  405 (497)
                                                                                   ..+++|+.|++++|.+++.
T Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~  647 (768)
T 3rgz_A          568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY  647 (768)
T ss_dssp             STTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC
T ss_pred             hccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccccc
Confidence                                                                         1123444555555555544


Q ss_pred             hHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCC
Q 010952          406 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT  476 (497)
Q Consensus       406 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~  476 (497)
                      .+..++.+++|+.|+|++| .+++.+|..++++++|+.|++++|++++.++..+..+++|+.|++++|+++
T Consensus       648 ip~~l~~l~~L~~L~Ls~N-~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          648 IPKEIGSMPYLFILNLGHN-DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             CCHHHhccccCCEEeCcCC-ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence            4445555555555555555 455445555555555555555555555555555555555555555555443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.2e-45  Score=381.74  Aligned_cols=421  Identities=22%  Similarity=0.202  Sum_probs=312.8

Q ss_pred             cCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCC----------------
Q 010952           49 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA----------------  112 (497)
Q Consensus        49 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----------------  112 (497)
                      .+++|++|+++++.+.+..+. ++++++|++|++++| .+.+..+..+..+++|++|++++|..                
T Consensus       198 ~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~  275 (768)
T 3rgz_A          198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS  275 (768)
T ss_dssp             TCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS-CCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred             cCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC-cCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence            345555555555555433333 555555555555555 34444455555555555555555432                


Q ss_pred             -----CChHHHHHHhC-CCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeecccc
Q 010952          113 -----ITAQGMKAFAG-LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV  186 (497)
Q Consensus       113 -----~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  186 (497)
                           +...+|..+.. +++|++|++++|......+..++.+++|++|++++|..........+..+++|++|++++|.+
T Consensus       276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l  355 (768)
T 3rgz_A          276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF  355 (768)
T ss_dssp             CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred             CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence                 11122333333 366666666665433344555667777777777765432222223355666666666666655


Q ss_pred             CchhHH-------------------------hhhc--CCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHh
Q 010952          187 TDSGIA-------------------------YLKG--LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC  239 (497)
Q Consensus       187 ~~~~~~-------------------------~l~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  239 (497)
                      .+..+.                         .+..  +++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus       356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  435 (768)
T 3rgz_A          356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP  435 (768)
T ss_dssp             EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred             CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc
Confidence            433332                         2222  5567788888887776677888999999999999999887788


Q ss_pred             HhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCC
Q 010952          240 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN  319 (497)
Q Consensus       240 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  319 (497)
                      ..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++
T Consensus       436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  515 (768)
T 3rgz_A          436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN  515 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred             HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence            88999999999999999998777778889999999999999998777778889999999999999998877888999999


Q ss_pred             CCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHH---------------------------------------
Q 010952          320 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA---------------------------------------  360 (497)
Q Consensus       320 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---------------------------------------  360 (497)
                      |++|++++|.+....+..+.++++|+.|++++|.++...+.                                       
T Consensus       516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (768)
T 3rgz_A          516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE  595 (768)
T ss_dssp             CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred             CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence            99999999999877888899999999999999876532221                                       


Q ss_pred             -------------------------------HhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHh
Q 010952          361 -------------------------------ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH  409 (497)
Q Consensus       361 -------------------------------~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~  409 (497)
                                                     .+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..
T Consensus       596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~  675 (768)
T 3rgz_A          596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE  675 (768)
T ss_dssp             CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred             cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH
Confidence                                           1223578999999999999988999999999999999999999988999


Q ss_pred             hhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccC
Q 010952          410 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC  473 (497)
Q Consensus       410 ~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~  473 (497)
                      ++.+++|+.|+|++| ++++.+|..+..+++|++|++++|++++.+|+. ..+.++....+.+|
T Consensus       676 l~~L~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN  737 (768)
T 3rgz_A          676 VGDLRGLNILDLSSN-KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNN  737 (768)
T ss_dssp             GGGCTTCCEEECCSS-CCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSC
T ss_pred             HhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCC
Confidence            999999999999999 899889999999999999999999999876642 33444555555565

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.4e-44  Score=366.12  Aligned_cols=421  Identities=21%  Similarity=0.242  Sum_probs=232.3

Q ss_pred             CceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEE
Q 010952           51 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL  130 (497)
Q Consensus        51 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  130 (497)
                      +++++|+++++.++...+..|+++++|++|++++| .+....+.+|.++++|++|++++|. +....|..++++++|++|
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L  110 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHL  110 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CSEECTTTTSSCTTCCEE
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCc-ccccChhhhcccccccEe
Confidence            46788888888877655667788888888888887 5666667778888888888888886 455556677888888888


Q ss_pred             eccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCc--EEEccCC
Q 010952          131 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT--LLNLEGC  208 (497)
Q Consensus       131 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l~~~  208 (497)
                      ++++|......+..++.+++|++|++++|. +.......+..+++|++|++++|.+....+..+..+++|+  .+++++|
T Consensus       111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n  189 (606)
T 3t6q_A          111 FFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN  189 (606)
T ss_dssp             ECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred             eccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence            888765333335567778888888888754 3333334444477788888877777766666666666666  6666666


Q ss_pred             CCChHHH-------------------------------------------------------------------------
Q 010952          209 PVTAACL-------------------------------------------------------------------------  215 (497)
Q Consensus       209 ~~~~~~~-------------------------------------------------------------------------  215 (497)
                      .+.+..+                                                                         
T Consensus       190 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~  269 (606)
T 3t6q_A          190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI  269 (606)
T ss_dssp             CCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred             ccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence            5443222                                                                         


Q ss_pred             --HHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCH-hHHHHHhC
Q 010952          216 --DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTG  292 (497)
Q Consensus       216 --~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~-~~~~~l~~  292 (497)
                        ..++.+++|++|++++|.+.. .+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.. .....+..
T Consensus       270 ~~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  348 (606)
T 3t6q_A          270 SSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN  348 (606)
T ss_dssp             CTTTTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred             CHHHhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence              113333444444444444432 22333444444444444444443333334444444444444443321 11122334


Q ss_pred             CCCCCEeeccCcccchHH--HHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHH-HHhcCCCCCc
Q 010952          293 LCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLT  369 (497)
Q Consensus       293 ~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~  369 (497)
                      +++|++|++++|.+....  +..+..+++|++|++++|.+....+..+.++++|+.|++++|.+....+ ..+..+++|+
T Consensus       349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  428 (606)
T 3t6q_A          349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK  428 (606)
T ss_dssp             CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred             cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence            444445554444443322  2234444555555555554443333444445555555555554433221 1234455555


Q ss_pred             EEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhH---HhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEe
Q 010952          370 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV---KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV  446 (497)
Q Consensus       370 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~---~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l  446 (497)
                      .|++++|.+....+..+..+++|++|++++|.+.+...   ..+..+++|++|++++| .+++..+..+..+++|+.|++
T Consensus       429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L  507 (606)
T 3t6q_A          429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDL  507 (606)
T ss_dssp             EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEC
T ss_pred             EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEEC
Confidence            55555555544444444555555555555555543211   23444555555555555 455544455555555555555


Q ss_pred             eCCccChhHHHhhcCCcccceeecccCCCCH
Q 010952          447 SNSRITSAGLRHLKPLKNLRSLTLESCKVTA  477 (497)
Q Consensus       447 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~  477 (497)
                      ++|++++..++.+..+++| .|++++|.++.
T Consensus       508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~  537 (606)
T 3t6q_A          508 SHNRLTSSSIEALSHLKGI-YLNLASNHISI  537 (606)
T ss_dssp             CSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred             CCCccCcCChhHhCccccc-EEECcCCcccc
Confidence            5555555555555555555 55555555543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2e-43  Score=357.58  Aligned_cols=424  Identities=21%  Similarity=0.193  Sum_probs=345.3

Q ss_pred             hcCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCC
Q 010952           48 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL  127 (497)
Q Consensus        48 ~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L  127 (497)
                      ..+++|++|+++++.+....+..|+++++|++|++++| .+....+..|+.+++|++|++++|. +....+..++++++|
T Consensus        54 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L  131 (606)
T 3t6q_A           54 SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTL  131 (606)
T ss_dssp             TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTC
T ss_pred             ccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhcccccccEeeccccC-cccCCcchhccCCcc
Confidence            45788999999998887766778888999999999887 6666667788888999999999887 454445667888889


Q ss_pred             CEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCC--EEEeecc---------------------
Q 010952          128 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK--SLQISCS---------------------  184 (497)
Q Consensus       128 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~--~L~l~~~---------------------  184 (497)
                      ++|++++|.......+.+..+++|++|++++|. +....+..+..+++|+  .|+++++                     
T Consensus       132 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~  210 (606)
T 3t6q_A          132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG  210 (606)
T ss_dssp             CEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECT
T ss_pred             cEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccC
Confidence            999988865333233444557888888887743 3333344455555555  4444443                     


Q ss_pred             ------------------------------------------------------ccCchhHHhhhcCCCCcEEEccCCCC
Q 010952          185 ------------------------------------------------------KVTDSGIAYLKGLQKLTLLNLEGCPV  210 (497)
Q Consensus       185 ------------------------------------------------------~~~~~~~~~l~~l~~L~~L~l~~~~~  210 (497)
                                                                            .+....+..+.++++|++|++++|.+
T Consensus       211 ~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  290 (606)
T 3t6q_A          211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL  290 (606)
T ss_dssp             TCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC
T ss_pred             CchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc
Confidence                                                                  33333344467789999999999988


Q ss_pred             ChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhH-HHHhhCCCCcCEEeCCCCCCCHhH--H
Q 010952          211 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNLDSCGIGDEG--L  287 (497)
Q Consensus       211 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~~~--~  287 (497)
                      .. +|..+..+++|++|++++|.+....+..++.+++|+.|++++|.+.... ...+..+++|+.|++++|.+....  +
T Consensus       291 ~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  369 (606)
T 3t6q_A          291 SE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN  369 (606)
T ss_dssp             SC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST
T ss_pred             CC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc
Confidence            75 5667889999999999999999887888999999999999999876332 334778999999999999887655  5


Q ss_pred             HHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHH-HHhcCCCCCcEEEcCCCCCCHhHHHHhcCCC
Q 010952          288 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLT  366 (497)
Q Consensus       288 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  366 (497)
                      ..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+ ..+..+++|+.|++++|.++...+..+..++
T Consensus       370 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  449 (606)
T 3t6q_A          370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP  449 (606)
T ss_dssp             TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT
T ss_pred             hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC
Confidence            567889999999999999887777788899999999999998765433 3477899999999999999887777788899


Q ss_pred             CCcEEEecCCCcChHH---HHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcE
Q 010952          367 GLTHLDLFGARITDSG---AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS  443 (497)
Q Consensus       367 ~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~  443 (497)
                      +|+.|++++|.+.+..   +..+..+++|+.|++++|.+++..+..+..+++|++|++++| .++...+..+.+++.| .
T Consensus       450 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~  527 (606)
T 3t6q_A          450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-Y  527 (606)
T ss_dssp             TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-E
T ss_pred             CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-E
Confidence            9999999999987632   245788999999999999999988888999999999999999 8999899999999999 9


Q ss_pred             EEeeCCccChhHHHhhcCCcccceeecccCCCCH
Q 010952          444 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA  477 (497)
Q Consensus       444 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~  477 (497)
                      |++++|++++..+..+..+++|+.|++++|+++.
T Consensus       528 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          528 LNLASNHISIILPSLLPILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             EECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred             EECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence            9999999998888888899999999999998864

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.2e-41  Score=347.10  Aligned_cols=130  Identities=23%  Similarity=0.317  Sum_probs=70.8

Q ss_pred             cCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHH--------hhhhcCCCCeecccCCCCCChhHHHH
Q 010952          363 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK--------HIKDLSSLTLLNLSQNCNLTDKTLEL  434 (497)
Q Consensus       363 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~--------~~~~l~~L~~L~l~~~~~l~~~~~~~  434 (497)
                      ..+++|+.|++++|.++...+..+..+++|+.|++++|.++.....        .+..+++|++|++++| .++...+..
T Consensus       477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~  555 (680)
T 1ziw_A          477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEV  555 (680)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred             ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHH
Confidence            3445555555555555544444445555555555555555443211        1344556666666666 555433344


Q ss_pred             hhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCHHHHHHHhhcCCCCCccC
Q 010952          435 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF  494 (497)
Q Consensus       435 l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p~L~~l  494 (497)
                      +.++++|+.|++++|.++......+..+++|+.|++++|.++......+. ..+++|+.+
T Consensus       556 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~~~~~L~~l  614 (680)
T 1ziw_A          556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG-PAFRNLTEL  614 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH-HHHTTCSEE
T ss_pred             cccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc-ccccccCEE
Confidence            56666666666666666655555556666677777777766655444332 234455544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=9.3e-42  Score=345.36  Aligned_cols=432  Identities=22%  Similarity=0.218  Sum_probs=297.7

Q ss_pred             CCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCE
Q 010952           50 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  129 (497)
Q Consensus        50 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  129 (497)
                      .+++++|+++++.+++..+..++++++|++|++++| .+....+.+|.++++|++|++++|. +....|..|+++++|++
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~  108 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLEN  108 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCE
T ss_pred             CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCE
Confidence            368999999999888766667889999999999988 6777667788899999999999987 55566788899999999


Q ss_pred             EeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCC----cEEEc
Q 010952          130 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL----TLLNL  205 (497)
Q Consensus       130 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~l  205 (497)
                      |++++|......+..++.+++|++|++++|.......+..+.++++|++|++++|.++...+..+..+++|    .++++
T Consensus       109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l  188 (606)
T 3vq2_A          109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM  188 (606)
T ss_dssp             EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred             EEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeec
Confidence            99998754444446688899999999998654433456778899999999999888876554444333222    24555


Q ss_pred             cCCCCCh------------------------HHHHHhhCCCCCcEE----------------------------------
Q 010952          206 EGCPVTA------------------------ACLDSLSALGSLFYL----------------------------------  227 (497)
Q Consensus       206 ~~~~~~~------------------------~~~~~l~~l~~L~~L----------------------------------  227 (497)
                      ++|.+..                        ..+..+.++++|+.+                                  
T Consensus       189 ~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l  268 (606)
T 3vq2_A          189 SLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL  268 (606)
T ss_dssp             TTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred             cCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence            5444432                        222333333333322                                  


Q ss_pred             ----------------------EcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHh
Q 010952          228 ----------------------NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE  285 (497)
Q Consensus       228 ----------------------~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~  285 (497)
                                            +++++.+....  .+..+++|+.|++++|.+.. .+ .+ .+++|+.|++++|.....
T Consensus       269 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~~-lp-~~-~l~~L~~L~l~~n~~~~~  343 (606)
T 3vq2_A          269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLKQ-FP-TL-DLPFLKSLTLTMNKGSIS  343 (606)
T ss_dssp             CCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCCSS-CC-CC-CCSSCCEEEEESCSSCEE
T ss_pred             cccccccccccccccCCCCCEEEecCccchhhh--hccccccCCEEEcccccCcc-cc-cC-CCCccceeeccCCcCccc
Confidence                                  22222221111  22333344444444444421 11 12 445555555554422211


Q ss_pred             HHHHHhCCCCCCEeeccCcccchHH--HHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHH-HHh
Q 010952          286 GLVNLTGLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AAL  362 (497)
Q Consensus       286 ~~~~l~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~  362 (497)
                      .  .+..+++|++|++++|.+....  +..+..+++|++|++++|.+... +..+..+++|+.|++++|.+....+ ..+
T Consensus       344 ~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  420 (606)
T 3vq2_A          344 F--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAF  420 (606)
T ss_dssp             C--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred             h--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhh
Confidence            1  3345667777777777665432  45566777888888887765542 2456677888888888887766544 466


Q ss_pred             cCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChh-hHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCC
Q 010952          363 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL  441 (497)
Q Consensus       363 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L  441 (497)
                      ..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|++|++++| .+++..+..+.++++|
T Consensus       421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L  499 (606)
T 3vq2_A          421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRL  499 (606)
T ss_dssp             TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTC
T ss_pred             hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccC
Confidence            7788899999999888877777788889999999999988773 4667788899999999999 8888777888889999


Q ss_pred             cEEEeeCCccChhHHHhhcCCcccceeecccCCCCHHHHHHHhhcCCC-CCccCC
Q 010952          442 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP-NLVSFR  495 (497)
Q Consensus       442 ~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p-~L~~l~  495 (497)
                      +.|++++|++++..+..+..+++|+.|++++|.++..... +  ..+| +|+.++
T Consensus       500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~--~~l~~~L~~l~  551 (606)
T 3vq2_A          500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-L--QHFPKSLAFFN  551 (606)
T ss_dssp             CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-G--GGSCTTCCEEE
T ss_pred             CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-H--hhhcccCcEEE
Confidence            9999999999888788888899999999999988743322 3  2455 466654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.5e-41  Score=348.49  Aligned_cols=191  Identities=19%  Similarity=0.275  Sum_probs=107.7

Q ss_pred             ccCcccchHHHHhhcCCCCCCEEeccCCCCChHHH-HHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcC
Q 010952          301 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT  379 (497)
Q Consensus       301 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  379 (497)
                      +++|.+....+..+..+++|+.|++++|.+....+ ..+.++++|+.|++++|.+.......+..+++|+.|++++|.+.
T Consensus       388 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  467 (680)
T 1ziw_A          388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK  467 (680)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCB
T ss_pred             CCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccc
Confidence            33333333333445566677777777766543222 34556666666666666655544455556666666666666543


Q ss_pred             --hHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHH--------HHhhcCCCCcEEEeeCC
Q 010952          380 --DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL--------ELISGLTGLVSLNVSNS  449 (497)
Q Consensus       380 --~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--------~~l~~~~~L~~L~l~~~  449 (497)
                        +..|..+..+++|+.|++++|.+++..+..+..+++|++|++++| .++....        ..+.++++|+.|++++|
T Consensus       468 ~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N  546 (680)
T 1ziw_A          468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN  546 (680)
T ss_dssp             CTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred             ccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence              223444556666666666666666655555566666666666666 4544321        12455666666666666


Q ss_pred             ccChhHHHhhcCCcccceeecccCCCCHHHHHHHhhcCCCCCccC
Q 010952          450 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF  494 (497)
Q Consensus       450 ~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p~L~~l  494 (497)
                      .++......+..+++|+.|++++|.++......+.  .+++|+.|
T Consensus       547 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~l~~L~~L  589 (680)
T 1ziw_A          547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN--NQVSLKSL  589 (680)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEE
T ss_pred             CCCCCCHHHcccccCcceeECCCCCCCcCCHhHhC--CCCCCCEE
Confidence            66654444566666666666666666543322222  44555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.1e-42  Score=345.05  Aligned_cols=419  Identities=23%  Similarity=0.250  Sum_probs=294.8

Q ss_pred             CCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCE
Q 010952           50 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  129 (497)
Q Consensus        50 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  129 (497)
                      .+++++|+++++.++...+..+..+++|++|++++| .+....+.+|.++++|++|++++|. +....+..|+++++|++
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  104 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK  104 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCE
T ss_pred             cccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCcccccc
Confidence            357999999999988766778899999999999998 6777667788999999999999997 55666678999999999


Q ss_pred             EeccCcccccccc-ccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCC----cEEE
Q 010952          130 LDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL----TLLN  204 (497)
Q Consensus       130 L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~  204 (497)
                      |++++|. +...+ ..++.+++|++|++++|.......+..+.++++|++|+++++.+....+..+..+++|    +.++
T Consensus       105 L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~  183 (570)
T 2z63_A          105 LVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD  183 (570)
T ss_dssp             EECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred             ccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcc
Confidence            9999875 44333 3688999999999998654332456788899999999999999887666666666666    7888


Q ss_pred             ccCCCCChHHHHHhhCCCCCcEEEcCCCCC--------------------------------------------------
Q 010952          205 LEGCPVTAACLDSLSALGSLFYLNLNRCQL--------------------------------------------------  234 (497)
Q Consensus       205 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--------------------------------------------------  234 (497)
                      +++|.+....+..+... +|+.|+++++..                                                  
T Consensus       184 l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l  262 (570)
T 2z63_A          184 LSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF  262 (570)
T ss_dssp             CTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred             cCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence            88887665444333332 455554444311                                                  


Q ss_pred             --------ChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhC--------------------CCCcCEEeCCCCCCCHhH
Q 010952          235 --------SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG--------------------LTNLESLNLDSCGIGDEG  286 (497)
Q Consensus       235 --------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~--------------------~~~L~~L~l~~~~l~~~~  286 (497)
                              ....+..++.+++|+.|+++++.+.. .+..+..                    +++|+.+++.++.+....
T Consensus       263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~  341 (570)
T 2z63_A          263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF  341 (570)
T ss_dssp             EEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBC
T ss_pred             hhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccc
Confidence                    11112233445556666665554442 2222223                    344444444444332211


Q ss_pred             HHHHhCCCCCCEeeccCcccchHH--HHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHH-HHhc
Q 010952          287 LVNLTGLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALT  363 (497)
Q Consensus       287 ~~~l~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~  363 (497)
                      +.  ..+++|++|++++|.+....  +..+..+++|++|++++|.+...... +..+++|+.|++++|.+....+ ..+.
T Consensus       342 ~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~  418 (570)
T 2z63_A          342 SE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL  418 (570)
T ss_dssp             CC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred             cc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhh
Confidence            11  35667777777777665432  34556777788888877766543333 6677888888888877665433 3456


Q ss_pred             CCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCC-hhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCc
Q 010952          364 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV  442 (497)
Q Consensus       364 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~  442 (497)
                      .+++|+.|++++|.+....+..+..+++|+.|++++|.+. +..+..+..+++|++|++++| .+++..+..+..+++|+
T Consensus       419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~  497 (570)
T 2z63_A          419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQ  497 (570)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCC
T ss_pred             cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCC
Confidence            7788888888888877766667777888888888888876 344566777888888888888 77777777788888888


Q ss_pred             EEEeeCCccChhHHHhhcCCcccceeecccCCCCH
Q 010952          443 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA  477 (497)
Q Consensus       443 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~  477 (497)
                      .|++++|.+++..+..+..+++|+.|++++|+++.
T Consensus       498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence            88888888887776777888888888888887654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.7e-39  Score=325.03  Aligned_cols=416  Identities=20%  Similarity=0.193  Sum_probs=302.6

Q ss_pred             CCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCE
Q 010952           50 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  129 (497)
Q Consensus        50 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  129 (497)
                      .+++++|+++++.+++..+..++++++|++|++++| .+....+.+|..+++|++|++++|. +....+..++++++|++
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  102 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKY  102 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCE
T ss_pred             CCCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcE
Confidence            368999999999998766778999999999999998 6777777889999999999999998 56667778999999999


Q ss_pred             EeccCccccc-cccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCC
Q 010952          130 LDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC  208 (497)
Q Consensus       130 L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  208 (497)
                      |++++|.... ..+..++.+++|++|++++|..........+..+++|++|+++++.+....+..+..+++|++|+++++
T Consensus       103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  182 (549)
T 2z81_A          103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS  182 (549)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence            9999975333 345678999999999999977566555578889999999999999999888888999999999999999


Q ss_pred             CCChHHHHHhhCCCCCcEEEcCCCCCChhH---hHhhhcCCCCCEEEccCCCCChhHHHHh----hC-------------
Q 010952          209 PVTAACLDSLSALGSLFYLNLNRCQLSDDG---CEKFSKIGSLKVLNLGFNEITDECLVHL----KG-------------  268 (497)
Q Consensus       209 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~l----~~-------------  268 (497)
                      .+.......+..+++|++|++++|.+.+..   ......+++|+.|+++++.+.+..+..+    ..             
T Consensus       183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~  262 (549)
T 2z81_A          183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT  262 (549)
T ss_dssp             BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred             cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence            876644444567899999999998876531   1111234555666655555443222211    11             


Q ss_pred             ----------------------------------------------CCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeecc
Q 010952          269 ----------------------------------------------LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS  302 (497)
Q Consensus       269 ----------------------------------------------~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~  302 (497)
                                                                    .++|+.+++++|.+...+...+..+++|++|+++
T Consensus       263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls  342 (549)
T 2z81_A          263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS  342 (549)
T ss_dssp             EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECC
T ss_pred             ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEcc
Confidence                                                          2345555555555443333333456777777777


Q ss_pred             CcccchHHHH---hhcCCCCCCEEeccCCCCChHHH--HHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCC
Q 010952          303 DTQVGSSGLR---HLSGLTNLESINLSFTGISDGSL--RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR  377 (497)
Q Consensus       303 ~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  377 (497)
                      +|.+....+.   .++.+++|++|++++|.+.....  ..+..+++|+.|++++|.++.. +..+..+++|+.|++++|.
T Consensus       343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N~  421 (549)
T 2z81_A          343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTG  421 (549)
T ss_dssp             SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC-CSCCCCCTTCCEEECTTSC
T ss_pred             CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC-ChhhcccccccEEECCCCC
Confidence            7776654432   24566777777777777665432  4466677777777777766642 3344556777777777777


Q ss_pred             cChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHH
Q 010952          378 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR  457 (497)
Q Consensus       378 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~  457 (497)
                      +.... ..  ..++|+.|++++|.+++..    ..+++|++|++++| +++. +|. ...+++|+.|++++|++++..+.
T Consensus       422 l~~l~-~~--~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N-~l~~-ip~-~~~l~~L~~L~Ls~N~l~~~~~~  491 (549)
T 2z81_A          422 IRVVK-TC--IPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRN-KLKT-LPD-ASLFPVLLVMKISRNQLKSVPDG  491 (549)
T ss_dssp             CSCCC-TT--SCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSS-CCC-GGGCTTCCEEECCSSCCCCCCTT
T ss_pred             ccccc-ch--hcCCceEEECCCCChhhhc----ccCChhcEEECCCC-ccCc-CCC-cccCccCCEEecCCCccCCcCHH
Confidence            65421 11  1357777888877777642    46789999999999 7774 333 45789999999999999988777


Q ss_pred             hhcCCcccceeecccCCCCHH
Q 010952          458 HLKPLKNLRSLTLESCKVTAN  478 (497)
Q Consensus       458 ~l~~~~~L~~L~l~~~~~~~~  478 (497)
                      .+..+++|+.|++++|+++..
T Consensus       492 ~~~~l~~L~~L~l~~N~~~~~  512 (549)
T 2z81_A          492 IFDRLTSLQKIWLHTNPWDCS  512 (549)
T ss_dssp             GGGGCTTCCEEECCSSCBCCC
T ss_pred             HHhcCcccCEEEecCCCccCC
Confidence            888999999999999987653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.8e-41  Score=343.21  Aligned_cols=417  Identities=20%  Similarity=0.184  Sum_probs=332.7

Q ss_pred             hcCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCC
Q 010952           48 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL  127 (497)
Q Consensus        48 ~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L  127 (497)
                      ..+++|++|+++++.+++..+..|+++++|++|++++| .+....+..|+++++|++|++++|.. ....+..++++++|
T Consensus        53 ~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L  130 (606)
T 3vq2_A           53 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKL-ASLESFPIGQLITL  130 (606)
T ss_dssp             TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTSCC-CCSSSSCCTTCTTC
T ss_pred             cCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEccCCcc-ccccccccCCCCCC
Confidence            45789999999999888766777899999999999988 57776678889999999999999873 44444568889999


Q ss_pred             CEEeccCccccc-cccccccCCCCCCEEeccCCCCCCcccccccc---------------------------CCCCCCEE
Q 010952          128 VKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLS---------------------------GLTNLKSL  179 (497)
Q Consensus       128 ~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~---------------------------~l~~L~~L  179 (497)
                      ++|++++|.... ..+..++++++|++|++++|. +....+..+.                           ...+|+.|
T Consensus       131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L  209 (606)
T 3vq2_A          131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHEL  209 (606)
T ss_dssp             CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred             CEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeee
Confidence            999999875433 346778889999999998854 3222222221                           12256677


Q ss_pred             EeeccccCc-hhHH--------------------------------------------------------hhhcCCCCcE
Q 010952          180 QISCSKVTD-SGIA--------------------------------------------------------YLKGLQKLTL  202 (497)
Q Consensus       180 ~l~~~~~~~-~~~~--------------------------------------------------------~l~~l~~L~~  202 (497)
                      +++++.+.. ..+.                                                        .+..+++|+.
T Consensus       210 ~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~  289 (606)
T 3vq2_A          210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA  289 (606)
T ss_dssp             EEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSE
T ss_pred             eccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCE
Confidence            776665431 1111                                                        1445577788


Q ss_pred             EEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCC
Q 010952          203 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI  282 (497)
Q Consensus       203 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l  282 (497)
                      ++++++.+... + .+..+++|+.|++++|.+.. .+ .+ .+++|+.|++++|......  .+..+++|+.|++++|.+
T Consensus       290 L~l~~~~~~~l-~-~l~~~~~L~~L~l~~n~l~~-lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l  362 (606)
T 3vq2_A          290 MSLAGVSIKYL-E-DVPKHFKWQSLSIIRCQLKQ-FP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNAL  362 (606)
T ss_dssp             EEEESCCCCCC-C-CCCTTCCCSEEEEESCCCSS-CC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCE
T ss_pred             EEecCccchhh-h-hccccccCCEEEcccccCcc-cc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCcc
Confidence            88888877552 3 67788999999999999843 44 44 8999999999999554322  466889999999999987


Q ss_pred             CHhH--HHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHH-HHhcCCCCCcEEEcCCCCCCHhHH
Q 010952          283 GDEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGL  359 (497)
Q Consensus       283 ~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~  359 (497)
                      ....  +..+..+++|++|++++|.+.... ..+..+++|++|++++|.+....+ ..+.++++|+.|++++|.++...+
T Consensus       363 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  441 (606)
T 3vq2_A          363 SFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD  441 (606)
T ss_dssp             EEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT
T ss_pred             CCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch
Confidence            6543  566788999999999999876643 667889999999999998776554 567889999999999999987767


Q ss_pred             HHhcCCCCCcEEEecCCCcChH-HHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcC
Q 010952          360 AALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL  438 (497)
Q Consensus       360 ~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~  438 (497)
                      ..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+++..+..+..+++|++|++++| .+++..+..+..+
T Consensus       442 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l  520 (606)
T 3vq2_A          442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQL  520 (606)
T ss_dssp             TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTC
T ss_pred             hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCC
Confidence            7788999999999999998873 5667889999999999999999988888999999999999999 8998888999999


Q ss_pred             CCCcEEEeeCCccChhHHHhhcCCc-ccceeecccCCCCH
Q 010952          439 TGLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCKVTA  477 (497)
Q Consensus       439 ~~L~~L~l~~~~l~~~~~~~l~~~~-~L~~L~l~~~~~~~  477 (497)
                      ++|+.|++++|+++.. +..+..++ +|+.|++++|++..
T Consensus       521 ~~L~~L~l~~N~l~~~-p~~~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          521 YSLSTLDCSFNRIETS-KGILQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             TTCCEEECTTSCCCCE-ESCGGGSCTTCCEEECCSCCCCC
T ss_pred             CcCCEEECCCCcCccc-CHhHhhhcccCcEEEccCCCccc
Confidence            9999999999999854 44577887 59999999998864

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6e-41  Score=350.22  Aligned_cols=163  Identities=20%  Similarity=0.155  Sum_probs=126.1

Q ss_pred             cCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCC
Q 010952           49 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV  128 (497)
Q Consensus        49 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  128 (497)
                      ..+++++|+|+++.++...+..++++++|++|++++|.......+.+|.++++|++|++++|. +....|..|+++++|+
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~  100 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLF  100 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccC
Confidence            357899999999999877777899999999999999854444457789999999999999998 5666688899999999


Q ss_pred             EEeccCccccccccc--cccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcC--CCCcEEE
Q 010952          129 KLDLERCTRIHGGLV--NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL--QKLTLLN  204 (497)
Q Consensus       129 ~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~  204 (497)
                      +|++++|......+.  .+..+++|++|++++|..........+.++++|++|++++|.+....+..+..+  ++|+.|+
T Consensus       101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~  180 (844)
T 3j0a_A          101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS  180 (844)
T ss_dssp             CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred             EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence            999999754333333  388999999999999765443334678899999999999998876555555443  4555555


Q ss_pred             ccCCCCCh
Q 010952          205 LEGCPVTA  212 (497)
Q Consensus       205 l~~~~~~~  212 (497)
                      +++|.+..
T Consensus       181 L~~n~l~~  188 (844)
T 3j0a_A          181 LAANSLYS  188 (844)
T ss_dssp             ECCSBSCC
T ss_pred             CCCCcccc
Confidence            55554433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.3e-41  Score=340.77  Aligned_cols=435  Identities=19%  Similarity=0.188  Sum_probs=339.3

Q ss_pred             hhcCCCCCchhH---HHHHHhcCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCcccc-----Ch------------
Q 010952           31 CALQYPGVNDKW---MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQI-----SD------------   90 (497)
Q Consensus        31 ~~~~~~~~~~~~---~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~------------   90 (497)
                      +.|....-++.|   .++.|....+++.|+|+++++.+..+..++++++|++|++++|...     .+            
T Consensus        58 ~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~  137 (636)
T 4eco_A           58 ANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ  137 (636)
T ss_dssp             CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH
T ss_pred             CCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH
Confidence            345555566778   7777755579999999999999889999999999999999998320     00            


Q ss_pred             ---------------hHHHHhh-------------------CCCCCCEEEcC--CCCCCChHHHHHHhCCCCCCEEeccC
Q 010952           91 ---------------GGLEHLR-------------------GLSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLER  134 (497)
Q Consensus        91 ---------------~~~~~~~-------------------~~~~L~~L~l~--~~~~~~~~~~~~l~~l~~L~~L~l~~  134 (497)
                                     ..+..+.                   ....++.+.+.  .|. ++. +|..++++++|++|++++
T Consensus       138 ~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~-l~~-ip~~l~~l~~L~~L~Ls~  215 (636)
T 4eco_A          138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN-ITF-VSKAVMRLTKLRQFYMGN  215 (636)
T ss_dssp             HHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCE-EEE-ECGGGGGCTTCCEEEEES
T ss_pred             HHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCC-Ccc-CCHHHhcccCCCEEECcC
Confidence                           0000000                   01122222222  233 344 688899999999999999


Q ss_pred             cccccc------------------cccccc--CCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccc-cCc-hhHH
Q 010952          135 CTRIHG------------------GLVNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTD-SGIA  192 (497)
Q Consensus       135 ~~~~~~------------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~  192 (497)
                      |. +.+                  .+..++  ++++|++|++++|.. ....+..+..+++|++|++++|. +++ ..+.
T Consensus       216 n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~  293 (636)
T 4eco_A          216 SP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN-LTKLPTFLKALPEMQLINVACNRGISGEQLKD  293 (636)
T ss_dssp             CC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT-CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH
T ss_pred             Cc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC-CccChHHHhcCCCCCEEECcCCCCCccccchH
Confidence            76 555                  778888  999999999999654 44567889999999999999998 887 7777


Q ss_pred             hhhcC------CCCcEEEccCCCCChHHHH--HhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHH
Q 010952          193 YLKGL------QKLTLLNLEGCPVTAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV  264 (497)
Q Consensus       193 ~l~~l------~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  264 (497)
                      .+..+      ++|++|++++|.+. .+|.  .++.+++|++|++++|.+.+..+ .++.+++|+.|++++|.+. ..+.
T Consensus       294 ~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~  370 (636)
T 4eco_A          294 DWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPA  370 (636)
T ss_dssp             HHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCT
T ss_pred             HHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccH
Confidence            77766      99999999999998 4666  89999999999999999885566 7888999999999999887 4455


Q ss_pred             HhhCCCC-cCEEeCCCCCCCHhHHHHHhC--CCCCCEeeccCcccchHHHHhhc-------CCCCCCEEeccCCCCChHH
Q 010952          265 HLKGLTN-LESLNLDSCGIGDEGLVNLTG--LCNLKCLELSDTQVGSSGLRHLS-------GLTNLESINLSFTGISDGS  334 (497)
Q Consensus       265 ~l~~~~~-L~~L~l~~~~l~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~  334 (497)
                      .+..+++ |+.|++++|.+.. .+..+..  +++|++|++++|.+....+..+.       .+++|++|++++|.+....
T Consensus       371 ~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp  449 (636)
T 4eco_A          371 NFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP  449 (636)
T ss_dssp             TSEEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCC
T ss_pred             hhhhhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCC
Confidence            5778888 9999999998873 3444443  34899999999998876666666       6779999999999988655


Q ss_pred             HHHhcCCCCCcEEEcCCCCCCHhHHHHhcCC-------CCCcEEEecCCCcChHHHHHhh--ccCCCCeeeecCCCCChh
Q 010952          335 LRKLAGLSSLKSLNLDARQITDTGLAALTSL-------TGLTHLDLFGARITDSGAAYLR--NFKNLRSLEICGGGLTDA  405 (497)
Q Consensus       335 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~l~~~  405 (497)
                      ...+..+++|+.|++++|.++......+...       ++|+.|++++|.++.. |..+.  .+++|+.|++++|.+.+ 
T Consensus       450 ~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~-  527 (636)
T 4eco_A          450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYNSFSK-  527 (636)
T ss_dssp             THHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred             HHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCcc-ChhhhhccCCCcCEEECCCCCCCC-
Confidence            5666779999999999999885433333322       3899999999999854 55554  89999999999999998 


Q ss_pred             hHHhhhhcCCCCeecccC------CCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCHHH
Q 010952          406 GVKHIKDLSSLTLLNLSQ------NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND  479 (497)
Q Consensus       406 ~~~~~~~l~~L~~L~l~~------~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~  479 (497)
                      .+..+..+++|++|++++      | .+....|..+..+++|+.|++++|.++. ++..+.  ++|+.|++++|++....
T Consensus       528 ip~~~~~l~~L~~L~Ls~N~~ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          528 FPTQPLNSSTLKGFGIRNQRDAQGN-RTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             CCCGGGGCSSCCEEECCSCBCTTCC-BCCCCCCTTGGGCSSCCEEECCSSCCCB-CCSCCC--TTCCEEECCSCTTCEEE
T ss_pred             cChhhhcCCCCCEEECCCCcccccC-cccccChHHHhcCCCCCEEECCCCcCCc-cCHhHh--CcCCEEECcCCCCcccc
Confidence            467788899999999954      5 5676778889999999999999999954 444443  79999999999887643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=9.6e-41  Score=342.39  Aligned_cols=435  Identities=17%  Similarity=0.174  Sum_probs=323.5

Q ss_pred             hhcCCCCCchhH---HHHHHhcCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChh----------------
Q 010952           31 CALQYPGVNDKW---MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDG----------------   91 (497)
Q Consensus        31 ~~~~~~~~~~~~---~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----------------   91 (497)
                      |.|......+.|   .++.|..-.+++.|+|+++++.+..+..++++++|++|+++.++.+.+.                
T Consensus       300 C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~  379 (876)
T 4ecn_A          300 LNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER  379 (876)
T ss_dssp             CSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHH
T ss_pred             cccccccccccccCcCceEecCCCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhH
Confidence            444444444445   5555544478999999999999899999999999999999433333221                


Q ss_pred             ------------------------HHHHhh-----------CCCCCCEEEcCC--CCCCChHHHHHHhCCCCCCEEeccC
Q 010952           92 ------------------------GLEHLR-----------GLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLER  134 (497)
Q Consensus        92 ------------------------~~~~~~-----------~~~~L~~L~l~~--~~~~~~~~~~~l~~l~~L~~L~l~~  134 (497)
                                              ....+.           ....++.+.+..  |. +.. +|..++++++|++|++++
T Consensus       380 l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~-L~~-IP~~l~~L~~L~~L~Ls~  457 (876)
T 4ecn_A          380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR-ITF-ISKAIQRLTKLQIIYFAN  457 (876)
T ss_dssp             HHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCE-EEE-ECGGGGGCTTCCEEEEES
T ss_pred             HHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCc-ccc-hhHHHhcCCCCCEEECcC
Confidence                                    001111           111222222222  32 233 677899999999999999


Q ss_pred             cccccc------------------cccccc--CCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccc-cCc-hhHH
Q 010952          135 CTRIHG------------------GLVNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTD-SGIA  192 (497)
Q Consensus       135 ~~~~~~------------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~  192 (497)
                      |. +.+                  .|..++  ++++|++|++++|.. ....+..+..+++|+.|++++|. ++. ..|.
T Consensus       458 N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l-~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~  535 (876)
T 4ecn_A          458 SP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN-MTQLPDFLYDLPELQSLNIACNRGISAAQLKA  535 (876)
T ss_dssp             CC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT-CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH
T ss_pred             Cc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC-CccChHHHhCCCCCCEEECcCCCCcccccchH
Confidence            75 444                  677776  999999999998654 34566888999999999999998 887 6676


Q ss_pred             hhhcCC-------CCcEEEccCCCCChHHHH--HhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHH
Q 010952          193 YLKGLQ-------KLTLLNLEGCPVTAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL  263 (497)
Q Consensus       193 ~l~~l~-------~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  263 (497)
                      .+..++       +|+.|++++|.+. .+|.  .++.+++|+.|++++|.+. ..+ .++.+++|+.|++++|.+. ..+
T Consensus       536 ~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp  611 (876)
T 4ecn_A          536 DWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIP  611 (876)
T ss_dssp             HHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCC
T ss_pred             HHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cch
Confidence            665554       9999999999988 4666  8899999999999999988 444 7888999999999999888 455


Q ss_pred             HHhhCCCC-cCEEeCCCCCCCHhHHHHHhCC--CCCCEeeccCcccchHHHH---hhc--CCCCCCEEeccCCCCChHHH
Q 010952          264 VHLKGLTN-LESLNLDSCGIGDEGLVNLTGL--CNLKCLELSDTQVGSSGLR---HLS--GLTNLESINLSFTGISDGSL  335 (497)
Q Consensus       264 ~~l~~~~~-L~~L~l~~~~l~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~---~l~--~~~~L~~L~l~~~~~~~~~~  335 (497)
                      ..+..+++ |+.|++++|.+.. .+..+...  ++|+.|++++|.+....+.   .+.  ..++|+.|++++|.+.....
T Consensus       612 ~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~  690 (876)
T 4ecn_A          612 EDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT  690 (876)
T ss_dssp             TTSCEECTTCCEEECCSSCCCS-CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH
T ss_pred             HHHhhccccCCEEECcCCCCCc-CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCH
Confidence            55777888 9999999998873 33444433  3499999999988654322   112  34589999999998886555


Q ss_pred             HHhcCCCCCcEEEcCCCCCCHhHHHHhc-------CCCCCcEEEecCCCcChHHHHHhh--ccCCCCeeeecCCCCChhh
Q 010952          336 RKLAGLSSLKSLNLDARQITDTGLAALT-------SLTGLTHLDLFGARITDSGAAYLR--NFKNLRSLEICGGGLTDAG  406 (497)
Q Consensus       336 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~l~~~~  406 (497)
                      ..+..+++|+.|++++|.++......+.       ++++|+.|++++|.++.. |..+.  .+++|+.|++++|.+.+. 
T Consensus       691 ~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l~~~~l~~L~~L~Ls~N~L~~l-  768 (876)
T 4ecn_A          691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRATTLPYLSNMDVSYNCFSSF-  768 (876)
T ss_dssp             HHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGGSTTTCTTCCEEECCSSCCSSC-
T ss_pred             HHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccc-hHHhhhccCCCcCEEEeCCCCCCcc-
Confidence            5556889999999999988854333322       223899999999998843 55555  889999999999999884 


Q ss_pred             HHhhhhcCCCCeecccCCC-----CCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCHHH
Q 010952          407 VKHIKDLSSLTLLNLSQNC-----NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND  479 (497)
Q Consensus       407 ~~~~~~l~~L~~L~l~~~~-----~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~  479 (497)
                      +..+..+++|+.|+|++|+     .+....|..+..+++|+.|++++|++. .++..+.  ++|+.|++++|++....
T Consensus       769 p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~  843 (876)
T 4ecn_A          769 PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISID  843 (876)
T ss_dssp             CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred             chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccC
Confidence            6677789999999997731     566677888999999999999999984 4444443  69999999999886643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.8e-40  Score=332.36  Aligned_cols=395  Identities=21%  Similarity=0.195  Sum_probs=300.8

Q ss_pred             hcCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCC
Q 010952           48 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL  127 (497)
Q Consensus        48 ~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L  127 (497)
                      ..+++|++|+++++.+++..+..++++++|++|++++| .+....+..|.++++|++|++++|.. ....+..++++++|
T Consensus        49 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L  126 (570)
T 2z63_A           49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTL  126 (570)
T ss_dssp             TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCC-CCSTTCSCTTCTTC
T ss_pred             hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCcccccccccccccc-ccCCCccccccccc
Confidence            45789999999999888766677899999999999998 57766677899999999999999873 43333358899999


Q ss_pred             CEEeccCccccc-cccccccCCCCCCEEeccCCCCCCccccccccCCCCC----CEEEeeccccCchhH-----------
Q 010952          128 VKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL----KSLQISCSKVTDSGI-----------  191 (497)
Q Consensus       128 ~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~-----------  191 (497)
                      ++|++++|.... ..+..++++++|++|++++|. +....+..+..+++|    +.++++++.+....+           
T Consensus       127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L  205 (570)
T 2z63_A          127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL  205 (570)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred             cEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeE
Confidence            999999875333 246778899999999999854 333334444444444    455555554433222           


Q ss_pred             ----------------------------------------------------------------------HhhhcCCCCc
Q 010952          192 ----------------------------------------------------------------------AYLKGLQKLT  201 (497)
Q Consensus       192 ----------------------------------------------------------------------~~l~~l~~L~  201 (497)
                                                                                            ..+..+++|+
T Consensus       206 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~  285 (570)
T 2z63_A          206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS  285 (570)
T ss_dssp             EEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCS
T ss_pred             ecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCccc
Confidence                                                                                  2233445566


Q ss_pred             EEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCC
Q 010952          202 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG  281 (497)
Q Consensus       202 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  281 (497)
                      .|+++++.+.. .+..+..+ +|++|++++|.+.....   ..+++|+.|+++++......+.  ..+++|+.|++++|.
T Consensus       286 ~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~  358 (570)
T 2z63_A          286 SFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNG  358 (570)
T ss_dssp             EEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSC
T ss_pred             EEEecCccchh-hhhhhccC-CccEEeeccCcccccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCc
Confidence            66666665543 33344445 66666666666553221   3567788888877766543222  578999999999998


Q ss_pred             CCHhH--HHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHH-HHhcCCCCCcEEEcCCCCCCHhH
Q 010952          282 IGDEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTG  358 (497)
Q Consensus       282 l~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~  358 (497)
                      +....  +..+..+++|++|++++|.+...... +..+++|++|++++|.+....+ ..+.++++|+.|++++|.+....
T Consensus       359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  437 (570)
T 2z63_A          359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF  437 (570)
T ss_dssp             CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC
T ss_pred             cCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc
Confidence            87543  56678899999999999987765444 7889999999999997765433 45678999999999999988766


Q ss_pred             HHHhcCCCCCcEEEecCCCcC-hHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhc
Q 010952          359 LAALTSLTGLTHLDLFGARIT-DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG  437 (497)
Q Consensus       359 ~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~  437 (497)
                      +..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|++++..+..+..+++|++|++++| .+++..+..+..
T Consensus       438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~  516 (570)
T 2z63_A          438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDR  516 (570)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTT
T ss_pred             hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhc
Confidence            677888999999999999987 345667788999999999999999988888999999999999999 888877778899


Q ss_pred             CCCCcEEEeeCCccChh
Q 010952          438 LTGLVSLNVSNSRITSA  454 (497)
Q Consensus       438 ~~~L~~L~l~~~~l~~~  454 (497)
                      +++|+.|++++|+++..
T Consensus       517 l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          517 LTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             CTTCCEEECCSSCBCCC
T ss_pred             ccCCcEEEecCCcccCC
Confidence            99999999999998753

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=100.00  E-value=1.5e-35  Score=299.40  Aligned_cols=469  Identities=20%  Similarity=0.220  Sum_probs=344.4

Q ss_pred             CCchHHHHHHHHhhhhhhccChhhHHHHhhhhcCCCCCchhHHHHHHhcCCceeEEEeeCCCCChHHHHHhcCCCCcCEE
Q 010952            1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSL   80 (497)
Q Consensus         1 ~lp~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L   80 (497)
                      .||+|++.+||+++..     ....   ..+.    .++..|.....   ...+.+++.+.... .....+.++++|++|
T Consensus         8 ~LPdevL~~If~~L~~-----~~d~---~~~s----~vck~W~~~~~---~~~~~l~~~~~~~~-~~~~~~~~~~~L~~L   71 (594)
T 2p1m_B            8 SFPEEVLEHVFSFIQL-----DKDR---NSVS----LVCKSWYEIER---WCRRKVFIGNCYAV-SPATVIRRFPKVRSV   71 (594)
T ss_dssp             --CHHHHHHHHHTCCC-----HHHH---HHHH----TSCHHHHHHHH---HHCCEEEESSTTSS-CHHHHHHHCTTCCEE
T ss_pred             hCCHHHHHHHHhhcCC-----chhH---HHHH----HHHHHHHHhhh---hhceEEeecccccc-CHHHHHhhCCCceEE
Confidence            3899999999999831     2111   2233    68889987733   24567777664332 233457889999999


Q ss_pred             EccCccccChh--------------HHHHhhCCCCCCEEEcCCCCCCChHHHHHHh-CCCCCCEEeccCcccccc--ccc
Q 010952           81 DFNFCIQISDG--------------GLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG--GLV  143 (497)
Q Consensus        81 ~l~~~~~~~~~--------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~--~~~  143 (497)
                      ++++|..+.+.              ......++++|++|++++|. +++..+..+. .+++|++|++++|..+..  ...
T Consensus        72 ~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~  150 (594)
T 2p1m_B           72 ELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA  150 (594)
T ss_dssp             EEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHH
T ss_pred             eccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHH
Confidence            99998644322              12234578999999999997 6777777776 799999999999865544  233


Q ss_pred             cccCCCCCCEEeccCCCCCCccccccc----cCCCCCCEEEeeccc--cCchhHHh-hhcCCCCcEEEccCCCCChHHHH
Q 010952          144 NLKGLMKLESLNIKWCNCITDSDMKPL----SGLTNLKSLQISCSK--VTDSGIAY-LKGLQKLTLLNLEGCPVTAACLD  216 (497)
Q Consensus       144 ~~~~l~~L~~L~l~~~~~~~~~~~~~l----~~l~~L~~L~l~~~~--~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~  216 (497)
                      ....+++|++|++++|. +.+.....+    ..+++|+.|+++++.  +....... ...+++|++|++++|......+.
T Consensus       151 ~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~  229 (594)
T 2p1m_B          151 IAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT  229 (594)
T ss_dssp             HHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH
T ss_pred             HHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH
Confidence            44579999999999976 444333333    367899999999875  55444433 36689999999999954444778


Q ss_pred             HhhCCCCCcEEEcCCCCC--C----hhHhHhhhcCCCCCEE-EccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHH
Q 010952          217 SLSALGSLFYLNLNRCQL--S----DDGCEKFSKIGSLKVL-NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN  289 (497)
Q Consensus       217 ~l~~l~~L~~L~l~~~~~--~----~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~  289 (497)
                      .+..+++|+.|+++.+..  .    ...+..+..+++|+.+ .+..... ...+..+..+++|+.|++++|.+.+.....
T Consensus       230 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~  308 (594)
T 2p1m_B          230 LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVK  308 (594)
T ss_dssp             HHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHH
T ss_pred             HHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHH
Confidence            888999999999877642  1    1233467889999999 3433222 223333446789999999999887655443


Q ss_pred             -HhCCCCCCEeeccCcccchHHHH-hhcCCCCCCEEecc---------CCCCChHHHHHhc-CCCCCcEEEcCCCCCCHh
Q 010952          290 -LTGLCNLKCLELSDTQVGSSGLR-HLSGLTNLESINLS---------FTGISDGSLRKLA-GLSSLKSLNLDARQITDT  357 (497)
Q Consensus       290 -l~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~---------~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~  357 (497)
                       +..+++|++|++.++ +...... ....+++|++|++.         .+.+++.....+. ++++|+.|.+..+.+++.
T Consensus       309 ~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~  387 (594)
T 2p1m_B          309 LLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNA  387 (594)
T ss_dssp             HHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHH
T ss_pred             HHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHH
Confidence             567899999999988 4443333 33468999999993         3467766665554 589999999888999987


Q ss_pred             HHHHhc-CCCCCcEEEec--C----CCcC----h-HHHHHhhccCCCCeeeecCCCCChhhHHhhhh-cCCCCeecccCC
Q 010952          358 GLAALT-SLTGLTHLDLF--G----ARIT----D-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQN  424 (497)
Q Consensus       358 ~~~~~~-~~~~L~~L~l~--~----~~~~----~-~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~-l~~L~~L~l~~~  424 (497)
                      +...+. .+++|+.|+++  +    +.++    + ..+..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|
T Consensus       388 ~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~  466 (594)
T 2p1m_B          388 ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFA  466 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCC
Confidence            776665 58999999999  3    4555    2 2344467899999999987 888887777766 899999999999


Q ss_pred             CCCChhHHHHh-hcCCCCcEEEeeCCccChhHHHhh-cCCcccceeecccCCCCHHHHHHHhhcCCCCCc
Q 010952          425 CNLTDKTLELI-SGLTGLVSLNVSNSRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV  492 (497)
Q Consensus       425 ~~l~~~~~~~l-~~~~~L~~L~l~~~~l~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p~L~  492 (497)
                       .+++..+..+ .++++|+.|++++|++++.....+ ..+++|+.|++++|+++..+++.+. ..+|+++
T Consensus       467 -~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~~lp~l~  534 (594)
T 2p1m_B          467 -GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLG-QKMPKLN  534 (594)
T ss_dssp             -CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHH-HHCTTEE
T ss_pred             -CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHH-HhCCCCE
Confidence             7888777766 679999999999999987766544 5689999999999999999999986 5778873

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.6e-38  Score=314.03  Aligned_cols=410  Identities=15%  Similarity=0.123  Sum_probs=301.7

Q ss_pred             CceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEE
Q 010952           51 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL  130 (497)
Q Consensus        51 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  130 (497)
                      +++++|+++++.+.+..+..+..+++|++|++++| .+....+..|.++++|++|++++|.. . .+|..  .+++|++|
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~-~lp~~--~l~~L~~L   95 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKL-V-KISCH--PTVNLKHL   95 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCC-C-EEECC--CCCCCSEE
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCce-e-ecCcc--ccCCccEE
Confidence            68888888888887666677888888888888887 67766677888888888888888874 3 23333  78888888


Q ss_pred             eccCccccc-cccccccCCCCCCEEeccCCCCCCccccccccCCCCC--CEEEeecccc--CchhHHhhhc---------
Q 010952          131 DLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL--KSLQISCSKV--TDSGIAYLKG---------  196 (497)
Q Consensus       131 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~--~~~~~~~l~~---------  196 (497)
                      ++++|.... ..+..++.+++|++|++++|. +..   ..+..+++|  ++|+++++.+  ....+..+..         
T Consensus        96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~  171 (520)
T 2z7x_B           96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV  171 (520)
T ss_dssp             ECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred             eccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence            888865333 245678888888888888754 332   345566666  8888888777  4444444433         


Q ss_pred             -----------------CCCCcEEEccCCC-------CChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhh---cCCCCC
Q 010952          197 -----------------LQKLTLLNLEGCP-------VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS---KIGSLK  249 (497)
Q Consensus       197 -----------------l~~L~~L~l~~~~-------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~---~l~~L~  249 (497)
                                       +++|+.+++++|.       +.+.. ..+..+++|+.|+++++.+.......+.   ..++|+
T Consensus       172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~  250 (520)
T 2z7x_B          172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW  250 (520)
T ss_dssp             CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred             eccCcchhhhhhhhhhcccceeeccccccccccccceeecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence                             4556666666654       33323 3566777788888777766543332221   245788


Q ss_pred             EEEccCCCCChhHHHHh-----hCCCCcCEEeCCCCCCCHhHHHHHhC---CCCCCEeeccCcccchHHHHhhcCCCCCC
Q 010952          250 VLNLGFNEITDECLVHL-----KGLTNLESLNLDSCGIGDEGLVNLTG---LCNLKCLELSDTQVGSSGLRHLSGLTNLE  321 (497)
Q Consensus       250 ~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~l~~~~~~~l~~---~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  321 (497)
                      .|++++|.+.+..+..+     ..+++|+.++++.+.+ ..+...+..   ..+++.|+++++.+....  ....+++|+
T Consensus       251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~  327 (520)
T 2z7x_B          251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFL  327 (520)
T ss_dssp             EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCC
T ss_pred             EEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCccc
Confidence            88888777664444444     5677777777777765 221122222   257899999888765432  125789999


Q ss_pred             EEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHh--HHHHhcCCCCCcEEEecCCCcCh-HHHHHhhccCCCCeeeec
Q 010952          322 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT--GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEIC  398 (497)
Q Consensus       322 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~  398 (497)
                      +|++++|.+.+..+..+.++++|+.|++++|.++..  .+..+..+++|+.|++++|.+.+ .....+..+++|++|+++
T Consensus       328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls  407 (520)
T 2z7x_B          328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS  407 (520)
T ss_dssp             EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred             EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence            999999999887777888999999999999999863  34668899999999999999987 433346788999999999


Q ss_pred             CCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCH
Q 010952          399 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA  477 (497)
Q Consensus       399 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~  477 (497)
                      +|.+++..+..+.  ++|++|++++| .++ .+|..+..+++|+.|++++|++++.....+..+++|+.|++++|+++.
T Consensus       408 ~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          408 SNILTDTIFRCLP--PRIKVLDLHSN-KIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             SSCCCGGGGGSCC--TTCCEEECCSS-CCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCCcchhhhhc--ccCCEEECCCC-ccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence            9999877655543  79999999999 788 456667799999999999999997554558889999999999998875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.5e-38  Score=314.63  Aligned_cols=424  Identities=21%  Similarity=0.174  Sum_probs=282.7

Q ss_pred             EEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccC
Q 010952           55 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER  134 (497)
Q Consensus        55 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  134 (497)
                      +.+.+++.++ .+|..+  .++|++|++++| .+....+..|.++++|++|++++|. +....+..|+++++|++|++++
T Consensus         9 ~c~~~~~~l~-~ip~~~--~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~   83 (549)
T 2z81_A            9 VCDGRSRSFT-SIPSGL--TAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSD   83 (549)
T ss_dssp             EEECTTSCCS-SCCSCC--CTTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTT
T ss_pred             eEECCCCccc-cccccC--CCCccEEECcCC-ccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCC
Confidence            3456666654 334333  379999999998 6777667789999999999999998 5666678899999999999999


Q ss_pred             ccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccc-cCchhHHhhhcCCCCcEEEccCCCCChH
Q 010952          135 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPVTAA  213 (497)
Q Consensus       135 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~  213 (497)
                      |......+..++.+++|++|++++|.......+..+..+++|++|+++++. +....+..+.++++|++|++++|.+.+.
T Consensus        84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  163 (549)
T 2z81_A           84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY  163 (549)
T ss_dssp             SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence            754433444589999999999999764432345678899999999999987 4544456789999999999999999887


Q ss_pred             HHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhH---HHHhhCCCCcCEEeCCCCCCCHhHHHHH
Q 010952          214 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC---LVHLKGLTNLESLNLDSCGIGDEGLVNL  290 (497)
Q Consensus       214 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~~l~~~~~~~l  290 (497)
                      .+..++.+++|+.|+++++.........+..+++|+.|++++|.+....   ......+++|+.|++.++.+.+..+..+
T Consensus       164 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  243 (549)
T 2z81_A          164 QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL  243 (549)
T ss_dssp             CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred             ChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHH
Confidence            8888999999999999999877655445567999999999999887531   1123357899999999887765544333


Q ss_pred             ----hCCCCCCEeeccCcc-----------------------------------------------------------cc
Q 010952          291 ----TGLCNLKCLELSDTQ-----------------------------------------------------------VG  307 (497)
Q Consensus       291 ----~~~~~L~~L~l~~~~-----------------------------------------------------------~~  307 (497)
                          ..+++++.+++.+|.                                                           +.
T Consensus       244 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~  323 (549)
T 2z81_A          244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF  323 (549)
T ss_dssp             HGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC
T ss_pred             HHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc
Confidence                233445555444433                                                           22


Q ss_pred             hHHHHhhcCCCCCCEEeccCCCCChHHHHH---hcCCCCCcEEEcCCCCCCHhHH--HHhcCCCCCcEEEecCCCcChHH
Q 010952          308 SSGLRHLSGLTNLESINLSFTGISDGSLRK---LAGLSSLKSLNLDARQITDTGL--AALTSLTGLTHLDLFGARITDSG  382 (497)
Q Consensus       308 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~  382 (497)
                      ......+..+++|++|++++|.+.+..+..   +..+++|+.|++++|.++....  ..+..+++|+.|++++|+++.. 
T Consensus       324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-  402 (549)
T 2z81_A          324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-  402 (549)
T ss_dssp             CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC-
T ss_pred             cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC-
Confidence            111111223455555555555554433221   3344555555555555544321  2344455555555555554422 


Q ss_pred             HHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCC
Q 010952          383 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL  462 (497)
Q Consensus       383 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~  462 (497)
                      |..+..+++|+.|++++|.+..... .+  .++|++|++++| .+++.    ...+++|++|++++|+++... . ...+
T Consensus       403 p~~~~~~~~L~~L~Ls~N~l~~l~~-~~--~~~L~~L~Ls~N-~l~~~----~~~l~~L~~L~Ls~N~l~~ip-~-~~~l  472 (549)
T 2z81_A          403 PDSCQWPEKMRFLNLSSTGIRVVKT-CI--PQTLEVLDVSNN-NLDSF----SLFLPRLQELYISRNKLKTLP-D-ASLF  472 (549)
T ss_dssp             CSCCCCCTTCCEEECTTSCCSCCCT-TS--CTTCSEEECCSS-CCSCC----CCCCTTCCEEECCSSCCSSCC-C-GGGC
T ss_pred             ChhhcccccccEEECCCCCcccccc-hh--cCCceEEECCCC-Chhhh----cccCChhcEEECCCCccCcCC-C-cccC
Confidence            3333444555555555555443211 11  145666666666 55542    246788888999988887432 2 4567


Q ss_pred             cccceeecccCCCCHHHHHHHhhcCCCCCccCCC
Q 010952          463 KNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP  496 (497)
Q Consensus       463 ~~L~~L~l~~~~~~~~~~~~l~~~~~p~L~~l~~  496 (497)
                      ++|+.|++++|.++......+.  .+++|+.|+.
T Consensus       473 ~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~l  504 (549)
T 2z81_A          473 PVLLVMKISRNQLKSVPDGIFD--RLTSLQKIWL  504 (549)
T ss_dssp             TTCCEEECCSSCCCCCCTTGGG--GCTTCCEEEC
T ss_pred             ccCCEEecCCCccCCcCHHHHh--cCcccCEEEe
Confidence            8899999999988875555454  6777776643

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=100.00  E-value=9.3e-36  Score=300.77  Aligned_cols=469  Identities=17%  Similarity=0.167  Sum_probs=345.1

Q ss_pred             CchHHHHHHHHhhhhhhccChhhHHHHhhhhcCCCCCchhHHHHHHhcCCceeEEEeeCCCCChHHHHHhcCCCCcCEEE
Q 010952            2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD   81 (497)
Q Consensus         2 lp~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~   81 (497)
                      ||+|++.+||+++.     ...   +...+.    .++..|.......   -+.+.+.+.. .......+.++++|++|+
T Consensus        16 LPdeil~~I~~~L~-----~~~---d~~~~s----~vck~W~~~~~~~---~~~l~~~~~~-~~~~~~~~~~~~~L~~L~   79 (592)
T 3ogk_B           16 TVDDVIEQVMTYIT-----DPK---DRDSAS----LVCRRWFKIDSET---REHVTMALCY-TATPDRLSRRFPNLRSLK   79 (592)
T ss_dssp             CGGGTHHHHHTTCC-----CHH---HHHHHT----TSCHHHHHHHHHH---CCEEEESCGG-GSCHHHHHHHCTTCSEEE
T ss_pred             CCHHHHHHHHHhcC-----CHH---HHHHHH----HHhHHHHHhhhcc---ccEEEEeecc-ccChHHHHHhCCCCeEEE
Confidence            89999999999971     111   112232    6788998875432   2344444421 123345567899999999


Q ss_pred             ccCccccCh--------------hHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhC-CCC-CCEEeccCcccccc--ccc
Q 010952           82 FNFCIQISD--------------GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG-LIN-LVKLDLERCTRIHG--GLV  143 (497)
Q Consensus        82 l~~~~~~~~--------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-l~~-L~~L~l~~~~~~~~--~~~  143 (497)
                      +++|..+..              ........+++|++|++++|. +.+..+..++. +++ |++|++++|.....  ...
T Consensus        80 L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~  158 (592)
T 3ogk_B           80 LKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLS  158 (592)
T ss_dssp             EECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHH
T ss_pred             ecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHH
Confidence            988754321              112223478999999999996 67777777766 455 99999999864322  122


Q ss_pred             cccCCCCCCEEeccCCCCCCccc----cccccCCCCCCEEEeeccccC----chhHHhhhcCCCCcEEEccCCCCChHHH
Q 010952          144 NLKGLMKLESLNIKWCNCITDSD----MKPLSGLTNLKSLQISCSKVT----DSGIAYLKGLQKLTLLNLEGCPVTAACL  215 (497)
Q Consensus       144 ~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~  215 (497)
                      ....+++|++|++++|.. .+..    ......+++|++|+++++.++    ...+..+.++++|+.|++++|.+.+ .+
T Consensus       159 ~~~~~~~L~~L~L~~~~~-~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~  236 (592)
T 3ogk_B          159 IVTHCRKIKTLLMEESSF-SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV  236 (592)
T ss_dssp             HHHHCTTCSEEECTTCEE-ECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH
T ss_pred             HHhhCCCCCEEECccccc-cCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH
Confidence            345789999999999753 3322    123457899999999998886    3444556789999999999998876 56


Q ss_pred             HHhhCCCCCcEEEcCCCCCC---hhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHH-HHHh
Q 010952          216 DSLSALGSLFYLNLNRCQLS---DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-VNLT  291 (497)
Q Consensus       216 ~~l~~l~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~-~~l~  291 (497)
                      ..+..+++|++|+++.....   ......+..+++|+.++++..... ..+..+..+++|+.|++++|.+..... ..+.
T Consensus       237 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~  315 (592)
T 3ogk_B          237 GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQ  315 (592)
T ss_dssp             HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHT
T ss_pred             HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHH
Confidence            78899999999999864322   122334567889999999875433 344556778999999999998876655 4467


Q ss_pred             CCCCCCEeeccCcccchH-HHHhhcCCCCCCEEeccC-----------CCCChHHHHH-hcCCCCCcEEEcCCCCCCHhH
Q 010952          292 GLCNLKCLELSDTQVGSS-GLRHLSGLTNLESINLSF-----------TGISDGSLRK-LAGLSSLKSLNLDARQITDTG  358 (497)
Q Consensus       292 ~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~-----------~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~  358 (497)
                      .+++|++|++. +.+... .......+++|++|++.+           +.+++..... ...+++|+.|++..+.+++..
T Consensus       316 ~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~  394 (592)
T 3ogk_B          316 KCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES  394 (592)
T ss_dssp             TCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH
T ss_pred             hCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH
Confidence            89999999998 444443 334446789999999993           5677655544 456899999999889999887


Q ss_pred             HHHhcC-CCCCcEEEec----CCCcCh-----HHHHHhhccCCCCeeeecCCC--CChhhHHhhhh-cCCCCeecccCCC
Q 010952          359 LAALTS-LTGLTHLDLF----GARITD-----SGAAYLRNFKNLRSLEICGGG--LTDAGVKHIKD-LSSLTLLNLSQNC  425 (497)
Q Consensus       359 ~~~~~~-~~~L~~L~l~----~~~~~~-----~~~~~l~~~~~L~~L~l~~~~--l~~~~~~~~~~-l~~L~~L~l~~~~  425 (497)
                      ...+.. +++|+.|+++    .+.+++     ..+..+..+++|+.|+++.|.  +++.....+.. +++|++|++++| 
T Consensus       395 ~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-  473 (592)
T 3ogk_B          395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-  473 (592)
T ss_dssp             HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-
T ss_pred             HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-
Confidence            777765 8999999996    456664     245556789999999998653  78777776655 899999999999 


Q ss_pred             CCChhH-HHHhhcCCCCcEEEeeCCccChhHHHh-hcCCcccceeecccCCCCHHHHHHHhhcCCCCCcc
Q 010952          426 NLTDKT-LELISGLTGLVSLNVSNSRITSAGLRH-LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS  493 (497)
Q Consensus       426 ~l~~~~-~~~l~~~~~L~~L~l~~~~l~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p~L~~  493 (497)
                      .+++.. +..+.++++|+.|++++|++++..... ...+++|+.|++++|.+++.+++.+. ..+|.+..
T Consensus       474 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~-~~~p~l~~  542 (592)
T 3ogk_B          474 GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ-MARPYWNI  542 (592)
T ss_dssp             CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGG-GCCTTEEE
T ss_pred             CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHH-HhCCCcEE
Confidence            788754 445578999999999999988765544 36789999999999999999998887 67887654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1e-38  Score=322.49  Aligned_cols=407  Identities=16%  Similarity=0.187  Sum_probs=322.2

Q ss_pred             CCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCC------CC---------hH-----------------HH----
Q 010952           75 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA------IT---------AQ-----------------GM----  118 (497)
Q Consensus        75 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~---------~~-----------------~~----  118 (497)
                      .+++.|+++++ .+.+..+.+++.+++|++|++++|..      ..         ..                 .+    
T Consensus        81 ~~V~~L~L~~~-~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~  159 (636)
T 4eco_A           81 GRVTGLSLEGF-GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS  159 (636)
T ss_dssp             CCEEEEECTTS-CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEEecCc-ccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence            58999999998 67777888999999999999999852      00         00                 00    


Q ss_pred             ----HHH-----------hCCCCCCEEeccC-ccccccccccccCCCCCCEEeccCCCCCCcc-----------------
Q 010952          119 ----KAF-----------AGLINLVKLDLER-CTRIHGGLVNLKGLMKLESLNIKWCNCITDS-----------------  165 (497)
Q Consensus       119 ----~~l-----------~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-----------------  165 (497)
                          ...           .....++.+.+.. +..+.+.+..++++++|++|++++|. +.+.                 
T Consensus       160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~  238 (636)
T 4eco_A          160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQY  238 (636)
T ss_dssp             HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhccc
Confidence                000           0011222222322 23455577789999999999999966 5543                 


Q ss_pred             cccccc--CCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCC-CCh-HHHHHhhCC------CCCcEEEcCCCCCC
Q 010952          166 DMKPLS--GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTA-ACLDSLSAL------GSLFYLNLNRCQLS  235 (497)
Q Consensus       166 ~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~~~  235 (497)
                      .+..++  .+++|++|++++|.+....+..+.++++|++|++++|. +++ ..|..++.+      ++|++|++++|.+.
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            677888  99999999999999988888999999999999999998 887 788888876      99999999999998


Q ss_pred             hhHhH--hhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCC-CCEeeccCcccchHHHH
Q 010952          236 DDGCE--KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN-LKCLELSDTQVGSSGLR  312 (497)
Q Consensus       236 ~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~  312 (497)
                       ..+.  .++.+++|+.|++++|.+.+..+ .+..+++|+.|++++|.+. ..+..+..+++ |++|++++|.+. ..+.
T Consensus       319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~  394 (636)
T 4eco_A          319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN  394 (636)
T ss_dssp             -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred             -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch
Confidence             5565  78999999999999999885555 6788899999999999776 34455777888 999999999987 3344


Q ss_pred             hhcCC--CCCCEEeccCCCCChHHHHHhc-------CCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHH
Q 010952          313 HLSGL--TNLESINLSFTGISDGSLRKLA-------GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA  383 (497)
Q Consensus       313 ~l~~~--~~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  383 (497)
                      .+...  ++|++|++++|.+....+..+.       .+++|+.|++++|.++......+..+++|+.|++++|.++...+
T Consensus       395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~  474 (636)
T 4eco_A          395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK  474 (636)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred             hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCH
Confidence            55544  4899999999999876666666       67899999999999987655667789999999999999885433


Q ss_pred             HHhhcc-------CCCCeeeecCCCCChhhHHhhh--hcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEee------C
Q 010952          384 AYLRNF-------KNLRSLEICGGGLTDAGVKHIK--DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS------N  448 (497)
Q Consensus       384 ~~l~~~-------~~L~~L~l~~~~l~~~~~~~~~--~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~------~  448 (497)
                      ..+...       ++|+.|++++|.++.. +..+.  .+++|++|++++| .++. +|..+..+++|+.|+++      +
T Consensus       475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N-~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~  551 (636)
T 4eco_A          475 NSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYN-SFSK-FPTQPLNSSTLKGFGIRNQRDAQG  551 (636)
T ss_dssp             SSSEETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTTCTTCCEEECCSS-CCSS-CCCGGGGCSSCCEEECCSCBCTTC
T ss_pred             HHhccccccccccCCccEEECcCCcCCcc-ChhhhhccCCCcCEEECCCC-CCCC-cChhhhcCCCCCEEECCCCccccc
Confidence            333322       3999999999999965 45554  8899999999999 7887 67888899999999995      5


Q ss_pred             CccChhHHHhhcCCcccceeecccCCCCHHHHHHHhhcCCCCCccCC
Q 010952          449 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR  495 (497)
Q Consensus       449 ~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p~L~~l~  495 (497)
                      |.+.+..+..+..+++|+.|++++|.++..     .....++|+.|+
T Consensus       552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i-----p~~~~~~L~~L~  593 (636)
T 4eco_A          552 NRTLREWPEGITLCPSLTQLQIGSNDIRKV-----NEKITPNISVLD  593 (636)
T ss_dssp             CBCCCCCCTTGGGCSSCCEEECCSSCCCBC-----CSCCCTTCCEEE
T ss_pred             CcccccChHHHhcCCCCCEEECCCCcCCcc-----CHhHhCcCCEEE
Confidence            677777888899999999999999998442     212336676654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-38  Score=330.33  Aligned_cols=417  Identities=20%  Similarity=0.226  Sum_probs=239.5

Q ss_pred             eEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEecc
Q 010952           54 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE  133 (497)
Q Consensus        54 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  133 (497)
                      +..+.++++++ .+|.   -.++|++|++++| .+....+..|.++++|++|++++|.......+..|.++++|++|+++
T Consensus         7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             EEEEESCCCSS-CCCS---SCTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred             eEEEccCCCCC-CCCC---CCCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence            45677777765 3443   4579999999998 67777778899999999999999965445457889999999999999


Q ss_pred             CccccccccccccCCCCCCEEeccCCCCCCccccc--cccCCCCCCEEEeeccccCchhH-HhhhcCCCCcEEEccCCCC
Q 010952          134 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK--PLSGLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGCPV  210 (497)
Q Consensus       134 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~  210 (497)
                      +|......+..+.++++|++|++++|. +.+..+.  .+..+++|++|++++|.+....+ ..++++++|++|++++|.+
T Consensus        82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A           82 SSKIYFLHPDAFQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             TCCCCEECTTSSCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             CCcCcccCHhHccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence            976555557889999999999999965 4433333  48899999999999999887654 5789999999999999988


Q ss_pred             ChHHHHHhhCC--CCCcEEEcCCCCCChhHhHhhhcCCC------CCEEEccCCCCChhHHHH-----------------
Q 010952          211 TAACLDSLSAL--GSLFYLNLNRCQLSDDGCEKFSKIGS------LKVLNLGFNEITDECLVH-----------------  265 (497)
Q Consensus       211 ~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~-----------------  265 (497)
                      ....+..+..+  ++|+.|++++|.+....+..++.+++      |+.|++++|.+....+..                 
T Consensus       161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~  240 (844)
T 3j0a_A          161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH  240 (844)
T ss_dssp             CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred             CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence            66545555444  55666666555544433332222222      455555444322111100                 


Q ss_pred             -------------------hhC--CCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEe
Q 010952          266 -------------------LKG--LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN  324 (497)
Q Consensus       266 -------------------l~~--~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  324 (497)
                                         +..  .++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|+
T Consensus       241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  320 (844)
T 3j0a_A          241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN  320 (844)
T ss_dssp             SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEE
T ss_pred             ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEE
Confidence                               000  13444444444444433333334444444444444444433333344444444444


Q ss_pred             ccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChH-----------------------
Q 010952          325 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-----------------------  381 (497)
Q Consensus       325 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----------------------  381 (497)
                      +++|.+....+..+.++++|+.|++++|.+.......+..+++|+.|++++|.++..                       
T Consensus       321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~  400 (844)
T 3j0a_A          321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN  400 (844)
T ss_dssp             EESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCC
T ss_pred             CCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccc
Confidence            444444333333344444444444444444333323333344444444444433221                       


Q ss_pred             -----------------HHHHhhccCCCCeeeecCCCCChhhHH-hhhhcCCCCeecccCCCCCC-----hhHHHHhhcC
Q 010952          382 -----------------GAAYLRNFKNLRSLEICGGGLTDAGVK-HIKDLSSLTLLNLSQNCNLT-----DKTLELISGL  438 (497)
Q Consensus       382 -----------------~~~~l~~~~~L~~L~l~~~~l~~~~~~-~~~~l~~L~~L~l~~~~~l~-----~~~~~~l~~~  438 (497)
                                       .+..+..+++|+.|++++|.+.+.... .+..+++|+.|++++| .++     +..+..+.++
T Consensus       401 ~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l  479 (844)
T 3j0a_A          401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN-MLQLAWETELCWDVFEGL  479 (844)
T ss_dssp             TTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESC-CCSSSCCSCCCSSCSSCB
T ss_pred             cccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCC-ccccccccccchhhhcCc
Confidence                             112233556666666666655533211 1222345555555555 332     1112234445


Q ss_pred             CCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCH
Q 010952          439 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA  477 (497)
Q Consensus       439 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~  477 (497)
                      ++|+.|++++|.+++..+..+..+++|+.|++++|.++.
T Consensus       480 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  518 (844)
T 3j0a_A          480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV  518 (844)
T ss_dssp             CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS
T ss_pred             ccccEEECCCCcccccChhHccchhhhheeECCCCCCCc
Confidence            555555555555555544555555556666665555543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=9.7e-37  Score=312.80  Aligned_cols=405  Identities=16%  Similarity=0.155  Sum_probs=314.0

Q ss_pred             CCcCEEEccCccccChhHHHHhhCCCCCCEEEc-CCCCCCChH-------------------------------------
Q 010952           75 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF-RRNNAITAQ-------------------------------------  116 (497)
Q Consensus        75 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~-------------------------------------  116 (497)
                      .++..|+|+++ .+.+..+..++.+++|++|++ ++|.. .+.                                     
T Consensus       323 ~~V~~L~Ls~~-~L~G~ip~~l~~L~~L~~LdLss~N~l-sG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~  400 (876)
T 4ecn_A          323 GRVTGLSLAGF-GAKGRVPDAIGQLTELKVLSFGTHSET-VSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL  400 (876)
T ss_dssp             SCEEEEECTTT-CCEEEECGGGGGCTTCCEEESCCTTHH-HHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred             CCEEEEECccC-CCCCcCchHHhccccceEeeecccccc-cccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence            58999999998 677778889999999999999 65531 111                                     


Q ss_pred             ---HHHHHhC-----------CCCCCEEeccC-ccccccccccccCCCCCCEEeccCCCCCCc-----------------
Q 010952          117 ---GMKAFAG-----------LINLVKLDLER-CTRIHGGLVNLKGLMKLESLNIKWCNCITD-----------------  164 (497)
Q Consensus       117 ---~~~~l~~-----------l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------  164 (497)
                         .+..+..           ...++.+.+.. +..+.+.|..++++++|++|++++|. +.+                 
T Consensus       401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g  479 (876)
T 4ecn_A          401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQ  479 (876)
T ss_dssp             CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHH
T ss_pred             hHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccc
Confidence               1111211           11222222322 12344467789999999999999965 444                 


Q ss_pred             ccccccc--CCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCC-CCh-HHHHHhhCCC-------CCcEEEcCCCC
Q 010952          165 SDMKPLS--GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTA-ACLDSLSALG-------SLFYLNLNRCQ  233 (497)
Q Consensus       165 ~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~l~~l~-------~L~~L~l~~~~  233 (497)
                      ..+..++  .+++|++|++++|.+....+..+.++++|+.|++++|. +.+ .+|..++.++       +|+.|++++|.
T Consensus       480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            2567776  99999999999999888888999999999999999998 887 7888777665       99999999999


Q ss_pred             CChhHhH--hhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCC-CCEeeccCcccchHH
Q 010952          234 LSDDGCE--KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN-LKCLELSDTQVGSSG  310 (497)
Q Consensus       234 ~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~-L~~L~l~~~~~~~~~  310 (497)
                      +. ..+.  .++.+++|+.|++++|.+. ..+ .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+. ..
T Consensus       560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l  634 (876)
T 4ecn_A          560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI  634 (876)
T ss_dssp             CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred             CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence            98 5565  7899999999999999988 444 7888999999999999887 44555777888 999999999987 33


Q ss_pred             HHhhcCCC--CCCEEeccCCCCChHHHH---Hhc--CCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHH
Q 010952          311 LRHLSGLT--NLESINLSFTGISDGSLR---KLA--GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA  383 (497)
Q Consensus       311 ~~~l~~~~--~L~~L~l~~~~~~~~~~~---~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  383 (497)
                      +..+...+  +|+.|++++|.+....+.   .+.  ..++|+.|++++|.++......+..+++|+.|++++|.+.....
T Consensus       635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~  714 (876)
T 4ecn_A          635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE  714 (876)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred             chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccCh
Confidence            45555444  499999999988654321   122  34589999999999997666666789999999999999885433


Q ss_pred             HHhh-------ccCCCCeeeecCCCCChhhHHhhh--hcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeC------
Q 010952          384 AYLR-------NFKNLRSLEICGGGLTDAGVKHIK--DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN------  448 (497)
Q Consensus       384 ~~l~-------~~~~L~~L~l~~~~l~~~~~~~~~--~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~------  448 (497)
                      ..+.       .+++|+.|++++|.++.. +..+.  .+++|+.|+|++| .++. +|..+..+++|+.|++++      
T Consensus       715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l~~~~l~~L~~L~Ls~N-~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~  791 (876)
T 4ecn_A          715 NSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRATTLPYLSNMDVSYN-CFSS-FPTQPLNSSQLKAFGIRHQRDAEG  791 (876)
T ss_dssp             TSSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGGSTTTCTTCCEEECCSS-CCSS-CCCGGGGCTTCCEEECCCCBCTTC
T ss_pred             HHhccccccccccCCccEEECCCCCCccc-hHHhhhccCCCcCEEEeCCC-CCCc-cchhhhcCCCCCEEECCCCCCccc
Confidence            3322       234999999999999965 55555  7899999999999 7887 577888999999999987      


Q ss_pred             CccChhHHHhhcCCcccceeecccCCCCHHHHHHHhhcCCCCCccCC
Q 010952          449 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR  495 (497)
Q Consensus       449 ~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p~L~~l~  495 (497)
                      |.+.+..+..+..+++|+.|++++|.++.     +...-.++|+.|+
T Consensus       792 N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~-----Ip~~l~~~L~~Ld  833 (876)
T 4ecn_A          792 NRILRQWPTGITTCPSLIQLQIGSNDIRK-----VDEKLTPQLYILD  833 (876)
T ss_dssp             CBCCCCCCTTGGGCSSCCEEECCSSCCCB-----CCSCCCSSSCEEE
T ss_pred             ccccccChHHHhcCCCCCEEECCCCCCCc-----cCHhhcCCCCEEE
Confidence            67777788889999999999999999843     2222335666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=3e-34  Score=280.65  Aligned_cols=391  Identities=25%  Similarity=0.283  Sum_probs=256.9

Q ss_pred             CCcCEEEccCccccChhHHHH-hhCCCCCCEEEcCCCCCCCh----HHHHHHhCCCCCCEEeccCccccccccccc-cCC
Q 010952           75 SNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSFRRNNAITA----QGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGL  148 (497)
Q Consensus        75 ~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~l  148 (497)
                      ++|++|+++++ .+....... +..+++|++|++++|.. .+    .++..+..+++|++|++++|......+..+ ..+
T Consensus         3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l-~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   80 (461)
T ss_dssp             EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCC-CHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCCC-CHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence            57888888877 566554444 67788899999988873 43    345667778888888888754222122111 122


Q ss_pred             C----CCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCc----hhHHhhhcCCCCcEEEccCCCCChHHHHHhh-
Q 010952          149 M----KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD----SGIAYLKGLQKLTLLNLEGCPVTAACLDSLS-  219 (497)
Q Consensus       149 ~----~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-  219 (497)
                      +    +|++|++++                         |.+++    ..+..+..+++|++|++++|.+....+..+. 
T Consensus        81 ~~~~~~L~~L~L~~-------------------------n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  135 (461)
T 1z7x_W           81 QTPSCKIQKLSLQN-------------------------CCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE  135 (461)
T ss_dssp             CSTTCCCCEEECTT-------------------------SCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred             hhCCCceeEEEccC-------------------------CCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence            2    455555554                         44442    2234444555555555555554433232222 


Q ss_pred             ----CCCCCcEEEcCCCCCChhH----hHhhhcCCCCCEEEccCCCCChhHHHHhh-----CCCCcCEEeCCCCCCCHhH
Q 010952          220 ----ALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFNEITDECLVHLK-----GLTNLESLNLDSCGIGDEG  286 (497)
Q Consensus       220 ----~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~l~~~~  286 (497)
                          ..++|++|++++|.+....    +..+..+++|+.|++++|.+.......+.     ..++|+.|++++|.+....
T Consensus       136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  215 (461)
T 1z7x_W          136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN  215 (461)
T ss_dssp             HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred             HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence                1345666666666555432    33344556666666666665543333222     3557777777777666532


Q ss_pred             ----HHHHhCCCCCCEeeccCcccchHHHHh-----hcCCCCCCEEeccCCCCChHH----HHHhcCCCCCcEEEcCCCC
Q 010952          287 ----LVNLTGLCNLKCLELSDTQVGSSGLRH-----LSGLTNLESINLSFTGISDGS----LRKLAGLSSLKSLNLDARQ  353 (497)
Q Consensus       287 ----~~~l~~~~~L~~L~l~~~~~~~~~~~~-----l~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~  353 (497)
                          +..+..+++|++|++++|.++......     ...+++|++|++++|.++...    +..+.++++|+.|++++|.
T Consensus       216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  295 (461)
T 1z7x_W          216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE  295 (461)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred             HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence                344556777888888877766543222     235788888888888887653    4455668899999999988


Q ss_pred             CCHhHHHHhc-----CCCCCcEEEecCCCcChH----HHHHhhccCCCCeeeecCCCCChhhHHhhhh-----cCCCCee
Q 010952          354 ITDTGLAALT-----SLTGLTHLDLFGARITDS----GAAYLRNFKNLRSLEICGGGLTDAGVKHIKD-----LSSLTLL  419 (497)
Q Consensus       354 ~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~-----l~~L~~L  419 (497)
                      +++.+...+.     ..++|+.|++++|.++..    .+..+..+++|++|++++|.+++.++..+..     .++|++|
T Consensus       296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L  375 (461)
T 1z7x_W          296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL  375 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEE
Confidence            8776554443     236899999999988865    4556678899999999999998877766654     5799999


Q ss_pred             cccCCCCCCh----hHHHHhhcCCCCcEEEeeCCccChhHHHhhc-----CCcccceeecccCCCCHHH---HHHHhhcC
Q 010952          420 NLSQNCNLTD----KTLELISGLTGLVSLNVSNSRITSAGLRHLK-----PLKNLRSLTLESCKVTAND---IKRLQSRD  487 (497)
Q Consensus       420 ~l~~~~~l~~----~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~---~~~l~~~~  487 (497)
                      ++++| .+++    ..+..+..+++|++|++++|++++.....+.     ..++|+.|.+.++.+....   ++.+. ..
T Consensus       376 ~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~-~~  453 (461)
T 1z7x_W          376 WLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE-KD  453 (461)
T ss_dssp             ECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHH-HH
T ss_pred             ECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHh-cc
Confidence            99999 8887    5677888899999999999999987655442     3457889998888777644   44444 66


Q ss_pred             CCCCccC
Q 010952          488 LPNLVSF  494 (497)
Q Consensus       488 ~p~L~~l  494 (497)
                      .|+++.+
T Consensus       454 ~p~l~i~  460 (461)
T 1z7x_W          454 KPSLRVI  460 (461)
T ss_dssp             CTTSEEE
T ss_pred             CCCcEee
Confidence            7887654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.3e-36  Score=296.00  Aligned_cols=392  Identities=15%  Similarity=0.149  Sum_probs=307.8

Q ss_pred             HhcCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCC
Q 010952           47 ASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN  126 (497)
Q Consensus        47 ~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~  126 (497)
                      ...+++|++|+++++.+++..+..++++++|++|++++| .+... +..  .+++|++|++++|.......|..++++++
T Consensus        41 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~  116 (520)
T 2z7x_B           41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKI-SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQ  116 (520)
T ss_dssp             HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEE-ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTT
T ss_pred             ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeec-Ccc--ccCCccEEeccCCccccccchhhhccCCc
Confidence            346899999999999998777888999999999999998 56643 222  79999999999998543346788999999


Q ss_pred             CCEEeccCccccccccccccCCCCC--CEEeccCCCCC-Ccccccc--------------------------ccCCCCCC
Q 010952          127 LVKLDLERCTRIHGGLVNLKGLMKL--ESLNIKWCNCI-TDSDMKP--------------------------LSGLTNLK  177 (497)
Q Consensus       127 L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~~-~~~~~~~--------------------------l~~l~~L~  177 (497)
                      |++|++++|. +..  ..+..+++|  ++|++++|... ....+..                          +..+++|+
T Consensus       117 L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~  193 (520)
T 2z7x_B          117 LKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE  193 (520)
T ss_dssp             CCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEE
T ss_pred             ceEEEecCcc-cch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccccee
Confidence            9999999965 332  456677788  99999986541 1222222                          23477888


Q ss_pred             EEEeeccc-------cCchhHHhhhcCCCCcEEEccCCCCChHHHHHhh---CCCCCcEEEcCCCCCChhHhHhh-----
Q 010952          178 SLQISCSK-------VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS---ALGSLFYLNLNRCQLSDDGCEKF-----  242 (497)
Q Consensus       178 ~L~l~~~~-------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~---~l~~L~~L~l~~~~~~~~~~~~l-----  242 (497)
                      .++++++.       +.+.. ..+..+++|+.|+++++.+.+..+..+.   ..++|++|++++|.+.+..+..+     
T Consensus       194 ~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~  272 (520)
T 2z7x_B          194 LSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG  272 (520)
T ss_dssp             ECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCS
T ss_pred             eccccccccccccceeecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhccc
Confidence            88888775       44333 4788999999999999988764443332   25799999999998876666666     


Q ss_pred             hcCCCCCEEEccCCCCChhHHHHhh---CCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCC
Q 010952          243 SKIGSLKVLNLGFNEITDECLVHLK---GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN  319 (497)
Q Consensus       243 ~~l~~L~~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  319 (497)
                      +.+++|+.++++++.+. .....+.   ...+|+.|+++++.+.....  ...+++|++|++++|.+....+..+..+++
T Consensus       273 ~~l~~L~~l~l~~n~~~-~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  349 (520)
T 2z7x_B          273 TSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTE  349 (520)
T ss_dssp             CCCCEEEEEEEEECCCC-SCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSS
T ss_pred             ccCceeEecccccccee-cchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCC
Confidence            78899999999998772 2112222   23689999999997754321  257899999999999998877788899999


Q ss_pred             CCEEeccCCCCCh--HHHHHhcCCCCCcEEEcCCCCCCH-hHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeee
Q 010952          320 LESINLSFTGISD--GSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE  396 (497)
Q Consensus       320 L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  396 (497)
                      |++|++++|.+..  ..+..+.++++|+.|++++|.++. .....+..+++|+.|++++|.+++..+..+  .++|+.|+
T Consensus       350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--~~~L~~L~  427 (520)
T 2z7x_B          350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLD  427 (520)
T ss_dssp             CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC--CTTCCEEE
T ss_pred             CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh--cccCCEEE
Confidence            9999999999986  445778999999999999999987 444457788999999999999987655443  27999999


Q ss_pred             ecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccCh
Q 010952          397 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS  453 (497)
Q Consensus       397 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~  453 (497)
                      +++|+++.. +..+..+++|++|++++| .++......+..+++|++|++++|++..
T Consensus       428 Ls~N~l~~i-p~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          428 LHSNKIKSI-PKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             CCSSCCCCC-CGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCccccc-chhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCCcc
Confidence            999999965 555558999999999999 7886444458889999999999999874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.6e-35  Score=289.06  Aligned_cols=361  Identities=17%  Similarity=0.198  Sum_probs=237.0

Q ss_pred             CCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCcccccc-ccccccCCCCCCEEeccCCCCCCccccccccCCCCCCE
Q 010952          100 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS  178 (497)
Q Consensus       100 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  178 (497)
                      ++|++|++++|. +....+..++++++|++|++++|..... .+..+..+++|++|++++|. +....+..+..+++|++
T Consensus        30 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  107 (455)
T 3v47_A           30 AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEV  107 (455)
T ss_dssp             TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTTCTTCCE
T ss_pred             CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhccCcccCCE
Confidence            689999999987 4555677888899999999998754322 24567888899999998854 45555677888888999


Q ss_pred             EEeeccccCchhHHh--hhcCCCCcEEEccCCCCChHHHHH-hhCCCCCcEEEcCCCCCChhHhHhhhcC--CCCCEEEc
Q 010952          179 LQISCSKVTDSGIAY--LKGLQKLTLLNLEGCPVTAACLDS-LSALGSLFYLNLNRCQLSDDGCEKFSKI--GSLKVLNL  253 (497)
Q Consensus       179 L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l  253 (497)
                      |++++|.+++..+..  +.++++|++|++++|.+.+..+.. +..+++|++|++++|.+....+..+..+  .+++.+++
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l  187 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL  187 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence            998888888755554  788888888888888887654544 6788888888888888777666666554  67888888


Q ss_pred             cCCCCChhHHH--------HhhCCCCcCEEeCCCCCCCHhHHHHHhC---CCCCCEeeccCcccchHHHHhhcCCCCCCE
Q 010952          254 GFNEITDECLV--------HLKGLTNLESLNLDSCGIGDEGLVNLTG---LCNLKCLELSDTQVGSSGLRHLSGLTNLES  322 (497)
Q Consensus       254 ~~~~~~~~~~~--------~l~~~~~L~~L~l~~~~l~~~~~~~l~~---~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  322 (497)
                      +++.+......        .+..+++|+.|++++|.+....+..+..   .++++.|+++++........ ...++.+  
T Consensus       188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~--  264 (455)
T 3v47_A          188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HTNFKDP--  264 (455)
T ss_dssp             TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CCSSCCC--
T ss_pred             ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-hhhhccC--
Confidence            88776642211        1234577888888888877766655543   36778888777643321100 0000000  


Q ss_pred             EeccCCCCChHHHHHhc--CCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCC
Q 010952          323 INLSFTGISDGSLRKLA--GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG  400 (497)
Q Consensus       323 L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  400 (497)
                                 ....+.  ..++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|
T Consensus       265 -----------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  333 (455)
T 3v47_A          265 -----------DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN  333 (455)
T ss_dssp             -----------CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             -----------cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence                       000001  2345666666666665554455556666666666666666555555566666666666666


Q ss_pred             CCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCH
Q 010952          401 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA  477 (497)
Q Consensus       401 ~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~  477 (497)
                      .+++..+..+..+++|++|++++| .++...+..+..+++|++|++++|++++.....+..+++|+.|++++|+++.
T Consensus       334 ~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          334 FLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             CCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence            666655555666666666666666 5665555566666666666666666665554555666666666666666544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=1.7e-32  Score=268.13  Aligned_cols=353  Identities=24%  Similarity=0.318  Sum_probs=203.9

Q ss_pred             CCceeEEEeeCCCCChHHHHH-hcCCCCcCEEEccCccccChh----HHHHhhCCCCCCEEEcCCCCCCChHHHHHH-hC
Q 010952           50 GSSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDG----GLEHLRGLSNLTSLSFRRNNAITAQGMKAF-AG  123 (497)
Q Consensus        50 ~~~l~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~  123 (497)
                      .+++++|+++++.+++..... +..+++|++|++++| .+...    .+..+..+++|++|++++|. +.+..+..+ ..
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~   79 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQG   79 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHT
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHH
Confidence            468999999999998766555 789999999999998 56643    34567788999999999998 455545444 34


Q ss_pred             CC----CCCEEeccCccccc----cccccccCCCCCCEEeccCCCCCCcccccccc-----CCCCCCEEEeeccccCchh
Q 010952          124 LI----NLVKLDLERCTRIH----GGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-----GLTNLKSLQISCSKVTDSG  190 (497)
Q Consensus       124 l~----~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~  190 (497)
                      ++    +|++|++++|....    ..+..+..+++|++|++++|. +.+..+..+.     ..++|++|+++++.+++..
T Consensus        80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  158 (461)
T 1z7x_W           80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS  158 (461)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence            66    79999999985332    224567778888888888754 4333333222     2456777777777776543


Q ss_pred             ----HHhhhcCCCCcEEEccCCCCChHHHHHhh-----CCCCCcEEEcCCCCCChhH----hHhhhcCCCCCEEEccCCC
Q 010952          191 ----IAYLKGLQKLTLLNLEGCPVTAACLDSLS-----ALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFNE  257 (497)
Q Consensus       191 ----~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~  257 (497)
                          +..+..+++|++|++++|.+....+..+.     ..++|++|++++|.+....    +..+..+++|+.|++++|.
T Consensus       159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  238 (461)
T 1z7x_W          159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK  238 (461)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence                34445567777777777776554343332     2456777777777665532    3444556666666666666


Q ss_pred             CChhHHHH-----hhCCCCcCEEeCCCCCCCHhH----HHHHhCCCCCCEeeccCcccchHHHHhhc-----CCCCCCEE
Q 010952          258 ITDECLVH-----LKGLTNLESLNLDSCGIGDEG----LVNLTGLCNLKCLELSDTQVGSSGLRHLS-----GLTNLESI  323 (497)
Q Consensus       258 ~~~~~~~~-----l~~~~~L~~L~l~~~~l~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L  323 (497)
                      +.......     ...+++|+.|++++|.++...    +..+..+++|++|++++|.++......+.     ..++|++|
T Consensus       239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L  318 (461)
T 1z7x_W          239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL  318 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence            55432211     123566666666666665542    22333455666666665555443332221     12355555


Q ss_pred             eccCCCCChHH----HHHhcCCCCCcEEEcCCCCCCHhHHHHhcC-----CCCCcEEEecCCCcCh----HHHHHhhccC
Q 010952          324 NLSFTGISDGS----LRKLAGLSSLKSLNLDARQITDTGLAALTS-----LTGLTHLDLFGARITD----SGAAYLRNFK  390 (497)
Q Consensus       324 ~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~l~~~~  390 (497)
                      ++++|.++...    +..+..+++|+.|++++|.+++.++..+..     .++|+.|++++|.+++    ..+..+..++
T Consensus       319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~  398 (461)
T 1z7x_W          319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH  398 (461)
T ss_dssp             ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred             EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence            55555544331    222333444555555444444433322221     3344444444444443    2233333344


Q ss_pred             CCCeeeecCCCCChh
Q 010952          391 NLRSLEICGGGLTDA  405 (497)
Q Consensus       391 ~L~~L~l~~~~l~~~  405 (497)
                      +|++|++++|++++.
T Consensus       399 ~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          399 SLRELDLSNNCLGDA  413 (461)
T ss_dssp             CCCEEECCSSSCCHH
T ss_pred             CccEEECCCCCCCHH
Confidence            444444444444433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=4.2e-35  Score=293.20  Aligned_cols=412  Identities=19%  Similarity=0.184  Sum_probs=266.4

Q ss_pred             CceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEE
Q 010952           51 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL  130 (497)
Q Consensus        51 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  130 (497)
                      ...+++++++++++. +|..+.  ++|++|++++| .+....+..|.++++|++|++++|. +....|..|+++++|++|
T Consensus        31 ~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L  105 (562)
T 3a79_B           31 ELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYL  105 (562)
T ss_dssp             --CCEEECTTSCCCS-CCTTSC--TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEE
T ss_pred             CCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCC-CccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEE
Confidence            344777777776653 443332  67777777776 5655555667777777777777776 445556667777777777


Q ss_pred             eccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCC
Q 010952          131 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV  210 (497)
Q Consensus       131 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  210 (497)
                      ++++|. +...+..  .+++|++|++++|....-..+..+..+++|++|+++++.+.......+..+ +|+.|++++|.+
T Consensus       106 ~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l  181 (562)
T 3a79_B          106 DVSHNR-LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSY  181 (562)
T ss_dssp             ECTTSC-CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSC
T ss_pred             ECCCCc-CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeecccc
Confidence            777754 3333333  677777777777543322234566777777777777777665332222222 237777776655


Q ss_pred             --ChHHHHHhh--------------------------CCCCCcEEEcCCCCCC----hhHhHhhhcCCCCCEEEccCCCC
Q 010952          211 --TAACLDSLS--------------------------ALGSLFYLNLNRCQLS----DDGCEKFSKIGSLKVLNLGFNEI  258 (497)
Q Consensus       211 --~~~~~~~l~--------------------------~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~  258 (497)
                        ....+..+.                          .+++|+.+++++|...    ......+..+++++.+++..+.+
T Consensus       182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l  261 (562)
T 3a79_B          182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET  261 (562)
T ss_dssp             CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred             cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence              322222222                          2345555555554311    11122344455555555554444


Q ss_pred             ChhHHHH---hhCCCCcCEEeCCCCCCCH-------------------------------hHHHHHhCCCCCCEeeccCc
Q 010952          259 TDECLVH---LKGLTNLESLNLDSCGIGD-------------------------------EGLVNLTGLCNLKCLELSDT  304 (497)
Q Consensus       259 ~~~~~~~---l~~~~~L~~L~l~~~~l~~-------------------------------~~~~~l~~~~~L~~L~l~~~  304 (497)
                      .......   ....++|+.|++++|.+.+                               .....+....++++|+++++
T Consensus       262 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n  341 (562)
T 3a79_B          262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT  341 (562)
T ss_dssp             CHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESS
T ss_pred             cHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCC
Confidence            3211111   1122345555544443321                               11111112356888888887


Q ss_pred             ccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHh--HHHHhcCCCCCcEEEecCCCcCh-H
Q 010952          305 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT--GLAALTSLTGLTHLDLFGARITD-S  381 (497)
Q Consensus       305 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~-~  381 (497)
                      .+....  ....+++|++|++++|.+.+..+..+.++++|+.|++++|.++..  .+..+..+++|+.|++++|.+.+ .
T Consensus       342 ~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~  419 (562)
T 3a79_B          342 PFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA  419 (562)
T ss_dssp             CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred             Cccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence            764321  125788999999999999887777888999999999999999863  34567889999999999999887 4


Q ss_pred             HHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcC
Q 010952          382 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP  461 (497)
Q Consensus       382 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~  461 (497)
                      .+..+..+++|+.|++++|.+++..+..++  ++|++|++++| .++. +|..+..+++|+.|++++|++++.....+..
T Consensus       420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~  495 (562)
T 3a79_B          420 YDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDR  495 (562)
T ss_dssp             SSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCC-CCTTTTSSCCCSEEECCSSCCCCCCTTSTTT
T ss_pred             ChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcc-cChhhcCCCCCCEEECCCCCCCCCCHHHHhc
Confidence            334467789999999999999876554443  79999999999 7885 5555668999999999999999755445889


Q ss_pred             CcccceeecccCCCCH
Q 010952          462 LKNLRSLTLESCKVTA  477 (497)
Q Consensus       462 ~~~L~~L~l~~~~~~~  477 (497)
                      +++|+.|++++|+++.
T Consensus       496 l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          496 LTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             CTTCCCEECCSCCBCC
T ss_pred             CCCCCEEEecCCCcCC
Confidence            9999999999998874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.1e-34  Score=283.17  Aligned_cols=382  Identities=18%  Similarity=0.180  Sum_probs=286.7

Q ss_pred             eEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEecc
Q 010952           54 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE  133 (497)
Q Consensus        54 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  133 (497)
                      +.++.++.+++ .+|.   -.++|++|++++| .+....+..|.++++|++|++++|.......+..|.++++|++|+++
T Consensus        13 ~~~~c~~~~l~-~lp~---l~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLH-QVPE---LPAHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCS-SCCC---CCTTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcc-cCCC---CCCccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            35666666554 2332   2278999999998 67777788899999999999999975334446779999999999999


Q ss_pred             CccccccccccccCCCCCCEEeccCCCCCCcccc--ccccCCCCCCEEEeeccccCchhHHh-hhcCCCCcEEEccCCCC
Q 010952          134 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM--KPLSGLTNLKSLQISCSKVTDSGIAY-LKGLQKLTLLNLEGCPV  210 (497)
Q Consensus       134 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~  210 (497)
                      +|......+..++.+++|++|++++|. +.+..+  ..+..+++|++|++++|.+....+.. +.++++|++|++++|.+
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             CCccCccChhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            976555557789999999999999965 433223  33889999999999999998776654 78999999999999998


Q ss_pred             ChHHHHHhhCC--CCCcEEEcCCCCCChhHhHh--------hhcCCCCCEEEccCCCCChhHHHHhhC---CCCcCEEeC
Q 010952          211 TAACLDSLSAL--GSLFYLNLNRCQLSDDGCEK--------FSKIGSLKVLNLGFNEITDECLVHLKG---LTNLESLNL  277 (497)
Q Consensus       211 ~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~--------l~~l~~L~~L~l~~~~~~~~~~~~l~~---~~~L~~L~l  277 (497)
                      .+..+..+..+  .+|+.++++++.+....+..        +..+++|+.|++++|.+....+..+..   .++|+.+++
T Consensus       167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred             cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence            87666666665  78999999999877643322        235688999999999998766665543   489999999


Q ss_pred             CCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHh
Q 010952          278 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT  357 (497)
Q Consensus       278 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  357 (497)
                      +++........ ...++.+.     ...     .. -...++|+++++++|.+....+..+..+++|+.|++++|.++..
T Consensus       247 ~~~~~~~~~~~-~~~~~~~~-----~~~-----~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  314 (455)
T 3v47_A          247 SNSYNMGSSFG-HTNFKDPD-----NFT-----FK-GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI  314 (455)
T ss_dssp             TTCTTTSCCTT-CCSSCCCC-----TTT-----TG-GGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             ccccccccccc-hhhhccCc-----ccc-----cc-cccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence            98854332110 00111100     000     00 01246788888888877766666677788888888888888776


Q ss_pred             HHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhc
Q 010952          358 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG  437 (497)
Q Consensus       358 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~  437 (497)
                      .+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++..+..+..
T Consensus       315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~  393 (455)
T 3v47_A          315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDR  393 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTT
T ss_pred             ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhcc
Confidence            6667777888888888888887776777778888888888888888877777788888888888888 777766666778


Q ss_pred             CCCCcEEEeeCCccChh
Q 010952          438 LTGLVSLNVSNSRITSA  454 (497)
Q Consensus       438 ~~~L~~L~l~~~~l~~~  454 (497)
                      +++|++|++++|+++..
T Consensus       394 l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          394 LTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             CTTCCEEECCSSCBCCC
T ss_pred             CCcccEEEccCCCcccC
Confidence            88888888888887653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=6e-32  Score=263.84  Aligned_cols=345  Identities=28%  Similarity=0.359  Sum_probs=190.4

Q ss_pred             CCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCE
Q 010952           50 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  129 (497)
Q Consensus        50 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  129 (497)
                      ++++++|+++++.+.. . ..+..+++|++|++++| .+....+  +..+++|++|++++|.. ....+  ++++++|++
T Consensus        45 l~~l~~L~l~~~~i~~-l-~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQI-ADITP--LANLTNLTG  116 (466)
T ss_dssp             HHTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCC-CCCGG--GTTCTTCCE
T ss_pred             hccccEEecCCCCCcc-C-cchhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCcc-ccChh--hcCCCCCCE
Confidence            3577888887776643 2 23667778888888776 4554333  67777777777777763 33322  677777777


Q ss_pred             EeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCC
Q 010952          130 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP  209 (497)
Q Consensus       130 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  209 (497)
                      |++++|. +...+. +..+++|++|++++|. +.+  ...+..+++|++|++.+ .+...  ..+.++++|++|++++|.
T Consensus       117 L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~--~~~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          117 LTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISD--ISALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNK  188 (466)
T ss_dssp             EECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECC--CGGGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             EECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCC--ChhhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCc
Confidence            7777753 333322 6666777777776643 221  23455666666666642 22221  125556666666666665


Q ss_pred             CChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHH
Q 010952          210 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN  289 (497)
Q Consensus       210 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~  289 (497)
                      +...  ..+..+++|++|++++|.+....+  ++.+++|+.|++++|.+...  ..+..+++|                 
T Consensus       189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L-----------------  245 (466)
T 1o6v_A          189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNL-----------------  245 (466)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTC-----------------
T ss_pred             CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCC-----------------
Confidence            5442  234555556666655555544322  34455555555555544432  123344444                 


Q ss_pred             HhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCc
Q 010952          290 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT  369 (497)
Q Consensus       290 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  369 (497)
                             ++|++++|.+....+  +..+++|+.|++++|.+....+  +..+++|+.|++++|.++...+  +..+++|+
T Consensus       246 -------~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  312 (466)
T 1o6v_A          246 -------TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT  312 (466)
T ss_dssp             -------SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred             -------CEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence                   444444444433221  3444555555555554443222  4455555555555555554322  44556666


Q ss_pred             EEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCC
Q 010952          370 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS  449 (497)
Q Consensus       370 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~  449 (497)
                      .|++++|.+.+..+  +..+++|+.|++++|.+.+.  ..+..+++|+.|++++| .+++..+  +..+++|+.|++++|
T Consensus       313 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLNDQ  385 (466)
T ss_dssp             EEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS-CCCBCGG--GTTCTTCCEEECCCE
T ss_pred             EEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCC-ccCccch--hhcCCCCCEEeccCC
Confidence            66666666555433  45566666666666666554  24555666666666666 5555444  556666666666666


Q ss_pred             ccCh
Q 010952          450 RITS  453 (497)
Q Consensus       450 ~l~~  453 (497)
                      ++++
T Consensus       386 ~~~~  389 (466)
T 1o6v_A          386 AWTN  389 (466)
T ss_dssp             EEEC
T ss_pred             cccC
Confidence            6554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.6e-32  Score=265.40  Aligned_cols=346  Identities=30%  Similarity=0.372  Sum_probs=246.4

Q ss_pred             CCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCccccccccccccCCCCCC
Q 010952           73 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE  152 (497)
Q Consensus        73 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  152 (497)
                      .+++++.|++.++ .+...  ..+..+++|++|++++|.. ....+  +.++++|++|++++|. +...+. +..+++|+
T Consensus        44 ~l~~l~~L~l~~~-~i~~l--~~~~~l~~L~~L~Ls~n~l-~~~~~--~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~  115 (466)
T 1o6v_A           44 DLDQVTTLQADRL-GIKSI--DGVEYLNNLTQINFSNNQL-TDITP--LKNLTKLVDILMNNNQ-IADITP-LANLTNLT  115 (466)
T ss_dssp             HHHTCCEEECCSS-CCCCC--TTGGGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCC
T ss_pred             HhccccEEecCCC-CCccC--cchhhhcCCCEEECCCCcc-CCchh--hhccccCCEEECCCCc-cccChh-hcCCCCCC
Confidence            3467888888877 44432  2467788888888888863 33333  7788888888888754 333333 77777777


Q ss_pred             EEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCC
Q 010952          153 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC  232 (497)
Q Consensus       153 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  232 (497)
                      +|++++|. +.+.  ..+..+++|++|+++++.+.+.  ..+.++++|+.|++.++ +...  ..+..+++|+.|++++|
T Consensus       116 ~L~L~~n~-l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~~-~~~~--~~~~~l~~L~~L~l~~n  187 (466)
T 1o6v_A          116 GLTLFNNQ-ITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQ-VTDL--KPLANLTTLERLDISSN  187 (466)
T ss_dssp             EEECCSSC-CCCC--GGGTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEES-CCCC--GGGTTCTTCCEEECCSS
T ss_pred             EEECCCCC-CCCC--hHHcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCCc-ccCc--hhhccCCCCCEEECcCC
Confidence            77777754 3322  2266777777777777666542  23556666666666432 2221  12444555555555555


Q ss_pred             CCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHH
Q 010952          233 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR  312 (497)
Q Consensus       233 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  312 (497)
                      .+...  .                        .+..+++|+.|++++|.+....+  +..+++|++|++++|.+...  .
T Consensus       188 ~l~~~--~------------------------~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~  237 (466)
T 1o6v_A          188 KVSDI--S------------------------VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--G  237 (466)
T ss_dssp             CCCCC--G------------------------GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--G
T ss_pred             cCCCC--h------------------------hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--h
Confidence            44321  1                        24445556666665555544332  44566777777777766543  3


Q ss_pred             hhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCC
Q 010952          313 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL  392 (497)
Q Consensus       313 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  392 (497)
                      .+..+++|++|++++|.+....+  +..+++|+.|++++|.++...+  +..+++|+.|++++|.+.+..+  +..+++|
T Consensus       238 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L  311 (466)
T 1o6v_A          238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL  311 (466)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred             hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence            46778999999999998876544  7889999999999999987543  7889999999999999887544  7889999


Q ss_pred             CeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeeccc
Q 010952          393 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES  472 (497)
Q Consensus       393 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~  472 (497)
                      +.|++++|.+.+..+  +..+++|++|++++| .+++.  ..+..+++|+.|++++|++++..+  +..+++|+.|++++
T Consensus       312 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~  384 (466)
T 1o6v_A          312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNN-KVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND  384 (466)
T ss_dssp             SEEECCSSCCSCCGG--GGGCTTCCEEECCSS-CCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCC
T ss_pred             CEEECcCCcCCCchh--hccCccCCEeECCCC-ccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccC
Confidence            999999999998755  678999999999999 78775  468899999999999999988765  88999999999999


Q ss_pred             CCCCH
Q 010952          473 CKVTA  477 (497)
Q Consensus       473 ~~~~~  477 (497)
                      |+++.
T Consensus       385 n~~~~  389 (466)
T 1o6v_A          385 QAWTN  389 (466)
T ss_dssp             EEEEC
T ss_pred             CcccC
Confidence            98765

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6e-34  Score=290.35  Aligned_cols=423  Identities=22%  Similarity=0.209  Sum_probs=293.4

Q ss_pred             CceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEE
Q 010952           51 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL  130 (497)
Q Consensus        51 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  130 (497)
                      +++++|+|++|.++...+..|.++++|++|++++| .+....+.+|.++++|++|+|++|. +....+..|.++++|++|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL  129 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEE
Confidence            47999999999998666678999999999999998 7877777889999999999999998 566666789999999999


Q ss_pred             eccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCC----CcEEEcc
Q 010952          131 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK----LTLLNLE  206 (497)
Q Consensus       131 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~----L~~L~l~  206 (497)
                      ++++|......+..++++++|++|++++|.......+..+..+++|++|++++|.++...+..+..+.+    ...++++
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls  209 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  209 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred             ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence            999975333333568999999999999976544445677889999999999999988665555433322    2234444


Q ss_pred             CCCCC------------------------hHHHHHhhCCCCCcEEEcCCCC------CChh-------------------
Q 010952          207 GCPVT------------------------AACLDSLSALGSLFYLNLNRCQ------LSDD-------------------  237 (497)
Q Consensus       207 ~~~~~------------------------~~~~~~l~~l~~L~~L~l~~~~------~~~~-------------------  237 (497)
                      .+.+.                        ......+..+..++...+....      +...                   
T Consensus       210 ~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~  289 (635)
T 4g8a_A          210 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA  289 (635)
T ss_dssp             TCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred             cCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence            44332                        1122334444444443331100      0000                   


Q ss_pred             --------H----------------------hHhhhcCCCCCEEEccCCCCChhHHH-------------------HhhC
Q 010952          238 --------G----------------------CEKFSKIGSLKVLNLGFNEITDECLV-------------------HLKG  268 (497)
Q Consensus       238 --------~----------------------~~~l~~l~~L~~L~l~~~~~~~~~~~-------------------~l~~  268 (497)
                              .                      ...+.....++.|++.++.+......                   ....
T Consensus       290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~  369 (635)
T 4g8a_A          290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD  369 (635)
T ss_dssp             CCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCB
T ss_pred             hhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccc
Confidence                    0                      00112223444444444332211000                   0112


Q ss_pred             CCCcCEEeCCCCCCCHh--HHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChH-HHHHhcCCCCCc
Q 010952          269 LTNLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLK  345 (497)
Q Consensus       269 ~~~L~~L~l~~~~l~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~  345 (497)
                      +++|+.++++.+.+...  .+.......+++.+++..+..... ...+..+++|+.+++..+..... ....+..+++++
T Consensus       370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~  448 (635)
T 4g8a_A          370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI  448 (635)
T ss_dssp             CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred             ccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhccccccccccccccccccc
Confidence            34555555555543221  122233455556665555543322 22345567777777776643222 223456788899


Q ss_pred             EEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcCh-HHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952          346 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  424 (497)
Q Consensus       346 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  424 (497)
                      .++++.|.+....+..+..+++++.|++++|.+.. ..+..+..+++|+.|++++|++.+..+..+..+++|++|+|++|
T Consensus       449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N  528 (635)
T 4g8a_A          449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN  528 (635)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC
Confidence            99999988877666677788999999999997443 34566788999999999999999998888999999999999999


Q ss_pred             CCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCC-cccceeecccCCCCH
Q 010952          425 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL-KNLRSLTLESCKVTA  477 (497)
Q Consensus       425 ~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~-~~L~~L~l~~~~~~~  477 (497)
                       +++...+..+.++++|+.|++++|++++..++.+..+ ++|+.|++++|+++-
T Consensus       529 -~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          529 -NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             -CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             -cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence             8988878889999999999999999999888888887 689999999998864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=4e-31  Score=248.32  Aligned_cols=285  Identities=28%  Similarity=0.375  Sum_probs=187.6

Q ss_pred             ccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCC
Q 010952          170 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK  249 (497)
Q Consensus       170 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  249 (497)
                      +..+++|++|+++++.+++..+  +.++++|++|++++|.+...  ..+..+++|++|++++|.+....+  +..+++|+
T Consensus        62 ~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~  135 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMY  135 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCC
T ss_pred             hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCcee
Confidence            4445555555555555443322  45555555555555555442  235555566666666555544322  45556666


Q ss_pred             EEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCC
Q 010952          250 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG  329 (497)
Q Consensus       250 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  329 (497)
                      .|++++|...... ..+..+++|+.|++++|.+.....  +..+++|++|++++|.+.....  +..+++|+.+++++|.
T Consensus       136 ~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~  210 (347)
T 4fmz_A          136 SLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQ  210 (347)
T ss_dssp             EEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred             EEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCC
Confidence            6666655332211 125566666666666665544333  5566677777777766654322  5667777777777776


Q ss_pred             CChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHh
Q 010952          330 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH  409 (497)
Q Consensus       330 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~  409 (497)
                      +.....  +..+++|+.|++++|.++....  +..+++|+.|++++|.++..  ..+..+++|+.|++++|.+.+.  ..
T Consensus       211 l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~  282 (347)
T 4fmz_A          211 ITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SV  282 (347)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GG
T ss_pred             CCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hh
Confidence            665433  5677788888888877776443  67788888888888877764  3467788888888888888776  34


Q ss_pred             hhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCC
Q 010952          410 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT  476 (497)
Q Consensus       410 ~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~  476 (497)
                      +..+++|++|++++| .+++..+..+..+++|+.|++++|++++..+  +..+++|++|++++|+++
T Consensus       283 ~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          283 LNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             hcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            677889999999998 7888888888889999999999999887654  778899999999999875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.98  E-value=1.3e-32  Score=275.06  Aligned_cols=389  Identities=16%  Similarity=0.140  Sum_probs=280.5

Q ss_pred             CCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCE
Q 010952           50 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  129 (497)
Q Consensus        50 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  129 (497)
                      .+++++|+++++.+.+..+..++.+++|++|++++| .+....+.+|..+++|++|++++|.. . .+|..  .+++|++
T Consensus        51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~-~lp~~--~l~~L~~  125 (562)
T 3a79_B           51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRL-Q-NISCC--PMASLRH  125 (562)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCC-C-EECSC--CCTTCSE
T ss_pred             CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcC-C-ccCcc--ccccCCE
Confidence            378999999999998766778999999999999998 78777788899999999999999984 4 34443  8999999


Q ss_pred             EeccCcccccc-ccccccCCCCCCEEeccCCCCCCccccccccCCCCC--CEEEeecccc--CchhHHhhh---------
Q 010952          130 LDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL--KSLQISCSKV--TDSGIAYLK---------  195 (497)
Q Consensus       130 L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~--~~~~~~~l~---------  195 (497)
                      |++++|..... .+..++++++|++|+++++. +...   .+..+++|  ++|+++++.+  +...+..+.         
T Consensus       126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l  201 (562)
T 3a79_B          126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL  201 (562)
T ss_dssp             EECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEE
T ss_pred             EECCCCCccccCchHhhcccCcccEEecCCCc-cccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEE
Confidence            99999754332 24689999999999999854 4433   34444455  9999988877  433333333         


Q ss_pred             -----------------cCCCCcEEEccCCCCC----hHHHHHhhCCCCCcEEEcCCCCCChhHhHhh---hcCCCCCEE
Q 010952          196 -----------------GLQKLTLLNLEGCPVT----AACLDSLSALGSLFYLNLNRCQLSDDGCEKF---SKIGSLKVL  251 (497)
Q Consensus       196 -----------------~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L  251 (497)
                                       .+++|+.++++++...    ......+..+++|+.+++.++.+.......+   ...++|+.|
T Consensus       202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L  281 (562)
T 3a79_B          202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL  281 (562)
T ss_dssp             EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEE
T ss_pred             EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEE
Confidence                             2346666777666421    1122334455555555554444332211110   112344444


Q ss_pred             EccCCCCCh-------------------------------hHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEee
Q 010952          252 NLGFNEITD-------------------------------ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE  300 (497)
Q Consensus       252 ~l~~~~~~~-------------------------------~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~  300 (497)
                      ++++|.+.+                               .....+....+|+.|+++++.+....  ....+++|++|+
T Consensus       282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~  359 (562)
T 3a79_B          282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLN  359 (562)
T ss_dssp             EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred             EEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEE
Confidence            444443321                               11111112367999999998775422  125788999999


Q ss_pred             ccCcccchHHHHhhcCCCCCCEEeccCCCCCh--HHHHHhcCCCCCcEEEcCCCCCCH-hHHHHhcCCCCCcEEEecCCC
Q 010952          301 LSDTQVGSSGLRHLSGLTNLESINLSFTGISD--GSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGAR  377 (497)
Q Consensus       301 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~  377 (497)
                      +++|.+....+..+..+++|++|++++|.+..  ..+..+.++++|+.|++++|.++. .....+..+++|+.|++++|.
T Consensus       360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~  439 (562)
T 3a79_B          360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM  439 (562)
T ss_dssp             CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred             CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence            99999988777788899999999999999886  445668899999999999999886 333456788999999999999


Q ss_pred             cChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccCh
Q 010952          378 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS  453 (497)
Q Consensus       378 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~  453 (497)
                      +++..+..+.  ++|+.|++++|.++.+ +..+..+++|++|++++| .++...+..+..+++|+.|++++|++..
T Consensus       440 l~~~~~~~l~--~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          440 LTGSVFRCLP--PKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             CCGGGGSSCC--TTCSEEECCSSCCCCC-CTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred             CCcchhhhhc--CcCCEEECCCCcCccc-ChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence            9875544332  7999999999999966 444448899999999999 7886444448899999999999999874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.98  E-value=1e-29  Score=256.77  Aligned_cols=425  Identities=22%  Similarity=0.223  Sum_probs=308.8

Q ss_pred             HHHhcCCceeEEEeeCCCCCh---------------HHHHHhcCCCCcCEEEccCccccChhHHHHhh-CCCCCCEEEcC
Q 010952           45 VIASQGSSLLSVDLSGSDVTD---------------SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFR  108 (497)
Q Consensus        45 ~~~~~~~~l~~L~l~~~~~~~---------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~  108 (497)
                      .+...++++++|+++++....               ........+++|++|++++| .+.+..+..+. .+++|++|+++
T Consensus        60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~  138 (594)
T 2p1m_B           60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLS  138 (594)
T ss_dssp             HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCC
Confidence            345568999999999854211               11223467899999999998 57777777776 79999999999


Q ss_pred             CCCCCChH-HHHHHhCCCCCCEEeccCcccccccc----ccccCCCCCCEEeccCCC-CCCccccccc-cCCCCCCEEEe
Q 010952          109 RNNAITAQ-GMKAFAGLINLVKLDLERCTRIHGGL----VNLKGLMKLESLNIKWCN-CITDSDMKPL-SGLTNLKSLQI  181 (497)
Q Consensus       109 ~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~-~~~~~~~~~l-~~l~~L~~L~l  181 (497)
                      +|..+... .+....++++|++|++++|.......    .....+++|++|++++|. .+.......+ ..+++|+.|++
T Consensus       139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L  218 (594)
T 2p1m_B          139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL  218 (594)
T ss_dssp             SCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred             CcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence            99545554 34445589999999999986322222    223477899999999875 2332223332 46799999999


Q ss_pred             eccccCchhHHhhhcCCCCcEEEccCCCC--C----hHHHHHhhCCCCCcEE-EcCCCCCChhHhHhhhcCCCCCEEEcc
Q 010952          182 SCSKVTDSGIAYLKGLQKLTLLNLEGCPV--T----AACLDSLSALGSLFYL-NLNRCQLSDDGCEKFSKIGSLKVLNLG  254 (497)
Q Consensus       182 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~----~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~l~~l~~L~~L~l~  254 (497)
                      .++......+..+..+++|+.|.+..+..  .    ...+..+.++++|+.+ .+.+.. ....+..+..+++|+.|+++
T Consensus       219 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~  297 (594)
T 2p1m_B          219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLS  297 (594)
T ss_dssp             CTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECT
T ss_pred             CCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEcc
Confidence            98743334667778899999999876632  1    2245577899999999 444332 12334444578999999999


Q ss_pred             CCCCChhHHH-HhhCCCCcCEEeCCCCCCCHhHHHHH-hCCCCCCEeecc---------CcccchHHHHhhc-CCCCCCE
Q 010952          255 FNEITDECLV-HLKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELS---------DTQVGSSGLRHLS-GLTNLES  322 (497)
Q Consensus       255 ~~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~~~~~~l-~~~~~L~~L~l~---------~~~~~~~~~~~l~-~~~~L~~  322 (497)
                      +|.+...... .+..+++|+.|++.+| +.+.....+ ..+++|++|++.         .+.++......+. .+++|++
T Consensus       298 ~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~  376 (594)
T 2p1m_B          298 YATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES  376 (594)
T ss_dssp             TCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHH
Confidence            9987754433 3568899999999987 444433333 358999999983         3455555444443 5899999


Q ss_pred             EeccCCCCChHHHHHhc-CCCCCcEEEcC--C----CCCC----HhHH-HHhcCCCCCcEEEecCCCcChHHHHHhhc-c
Q 010952          323 INLSFTGISDGSLRKLA-GLSSLKSLNLD--A----RQIT----DTGL-AALTSLTGLTHLDLFGARITDSGAAYLRN-F  389 (497)
Q Consensus       323 L~l~~~~~~~~~~~~l~-~~~~L~~L~l~--~----~~~~----~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~  389 (497)
                      |.+..+.+++.....+. .+++|+.|++.  +    +.++    +.+. ..+..+++|+.|++++ .+++..+..+.. +
T Consensus       377 L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~  455 (594)
T 2p1m_B          377 VLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYA  455 (594)
T ss_dssp             EEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHC
T ss_pred             HHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhc
Confidence            98888888887776665 58999999998  3    4566    3333 2356789999999987 788777777655 8


Q ss_pred             CCCCeeeecCCCCChhhHHhh-hhcCCCCeecccCCCCCChhHHHH-hhcCCCCcEEEeeCCccChhHHHhh-cCCcccc
Q 010952          390 KNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLEL-ISGLTGLVSLNVSNSRITSAGLRHL-KPLKNLR  466 (497)
Q Consensus       390 ~~L~~L~l~~~~l~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~~~~-l~~~~~L~~L~l~~~~l~~~~~~~l-~~~~~L~  466 (497)
                      ++|+.|++++|.+++.+...+ ..+++|++|+|++| .+++..+.. ...+++|+.|++++|+++......+ ..+|+|+
T Consensus       456 ~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~  534 (594)
T 2p1m_B          456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLN  534 (594)
T ss_dssp             TTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESC-SCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEE
T ss_pred             hhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCC-CCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCE
Confidence            999999999999988877766 66899999999999 677766653 4468999999999999987777766 5678887


Q ss_pred             eeecccCC
Q 010952          467 SLTLESCK  474 (497)
Q Consensus       467 ~L~l~~~~  474 (497)
                      ...+..+.
T Consensus       535 i~~~~~~~  542 (594)
T 2p1m_B          535 VEVIDERG  542 (594)
T ss_dssp             EEEECSSS
T ss_pred             EEEecCCC
Confidence            77776653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=1.2e-32  Score=270.01  Aligned_cols=302  Identities=20%  Similarity=0.226  Sum_probs=177.9

Q ss_pred             CCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEE
Q 010952          149 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN  228 (497)
Q Consensus       149 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  228 (497)
                      +++++|+++++ .+....+..+..+++|++|+++++.+....+..+.++++|++|++++|.+....+..+.++++|++|+
T Consensus        32 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           32 TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            46777777763 34444455666777777777777776666666667777777777777766654444456667777777


Q ss_pred             cCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccch
Q 010952          229 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS  308 (497)
Q Consensus       229 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~  308 (497)
                      +++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.+..
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence            77776666555566666677777777666655444455666666666666666655555556666666666666666555


Q ss_pred             HHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhc
Q 010952          309 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN  388 (497)
Q Consensus       309 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  388 (497)
                      .....+..+++|++|++++|......+.......+|+.|++++|.++......+..+++|+.|++++|.+....+..+..
T Consensus       191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (477)
T 2id5_A          191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE  270 (477)
T ss_dssp             ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred             eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence            44445555666666666665433322222223345555555555555544444555555555555555555444444455


Q ss_pred             cCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccC
Q 010952          389 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  452 (497)
Q Consensus       389 ~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~  452 (497)
                      +++|+.|++++|.+.+..+..+..+++|+.|+|++| .++...+..+..+++|+.|++++|++.
T Consensus       271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             cccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCcc
Confidence            555555555555555554455555555555555555 455444444455555555555555543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=3.2e-30  Score=242.13  Aligned_cols=305  Identities=30%  Similarity=0.363  Sum_probs=167.5

Q ss_pred             CCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCC
Q 010952           98 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK  177 (497)
Q Consensus        98 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  177 (497)
                      .+++|++|+++++.. ...  +.+..+++|++|++++|. +...+. +..+++|++|++++|. +.+  .+.+..+++|+
T Consensus        42 ~l~~L~~L~l~~~~i-~~~--~~~~~~~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~L~~n~-i~~--~~~~~~l~~L~  113 (347)
T 4fmz_A           42 ELESITKLVVAGEKV-ASI--QGIEYLTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTNK-ITD--ISALQNLTNLR  113 (347)
T ss_dssp             HHTTCSEEECCSSCC-CCC--TTGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCC--CGGGTTCTTCS
T ss_pred             hcccccEEEEeCCcc-ccc--hhhhhcCCccEEEccCCc-cccchh-hhcCCcCCEEEccCCc-ccC--chHHcCCCcCC
Confidence            456677777777653 221  236667777777777653 333333 6666666666666643 222  23455666666


Q ss_pred             EEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCC
Q 010952          178 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE  257 (497)
Q Consensus       178 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  257 (497)
                      +|+++++.+.....  +..+++|++|++++|...... ..+..+++|++|++++|.+....+  ++.+++|+.|++++|.
T Consensus       114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred             EEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence            66666665554322  555556666666555332211 224555555555555555443222  4444555555555544


Q ss_pred             CChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHH
Q 010952          258 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK  337 (497)
Q Consensus       258 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  337 (497)
                      +..                        ...  +..+++|+.+++++|.+.....  +..+++|++|++++|.+.....  
T Consensus       189 l~~------------------------~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--  238 (347)
T 4fmz_A          189 IED------------------------ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--  238 (347)
T ss_dssp             CCC------------------------CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred             ccc------------------------ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence            443                        222  3344455555555544433221  4445555555555555543322  


Q ss_pred             hcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCC
Q 010952          338 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT  417 (497)
Q Consensus       338 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~  417 (497)
                      +..+++|+.|++++|.++..  ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus       239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  314 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT  314 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred             hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence            45556666666666655543  3455666666666666666553  2355667777777777777766666666677777


Q ss_pred             eecccCCCCCChhHHHHhhcCCCCcEEEeeCCccC
Q 010952          418 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  452 (497)
Q Consensus       418 ~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~  452 (497)
                      +|++++| .+++..+  +..+++|+.|++++|+++
T Consensus       315 ~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          315 TLFLSQN-HITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EEECCSS-SCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EEEccCC-ccccccC--hhhhhccceeehhhhccc
Confidence            7777777 5665444  666777777777777654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.97  E-value=3e-30  Score=260.45  Aligned_cols=425  Identities=19%  Similarity=0.182  Sum_probs=303.1

Q ss_pred             HHHHhcCCceeEEEeeCCCC--------------ChHHHH-HhcCCCCcCEEEccCccccChhHHHHhhC-CCC-CCEEE
Q 010952           44 DVIASQGSSLLSVDLSGSDV--------------TDSGLI-HLKDCSNLQSLDFNFCIQISDGGLEHLRG-LSN-LTSLS  106 (497)
Q Consensus        44 ~~~~~~~~~l~~L~l~~~~~--------------~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~-L~~L~  106 (497)
                      ..+...++++++|+++++..              ...... ....+++|++|++++| .+.+..+..+.. ++. |++|+
T Consensus        66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~  144 (592)
T 3ogk_B           66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLK  144 (592)
T ss_dssp             HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEE
T ss_pred             HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEE
Confidence            34556678899999976321              111222 2348899999999988 677766777765 444 99999


Q ss_pred             cCCCCCCChH-HHHHHhCCCCCCEEeccCcccccc----ccccccCCCCCCEEeccCCCCC--C-ccccccccCCCCCCE
Q 010952          107 FRRNNAITAQ-GMKAFAGLINLVKLDLERCTRIHG----GLVNLKGLMKLESLNIKWCNCI--T-DSDMKPLSGLTNLKS  178 (497)
Q Consensus       107 l~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~--~-~~~~~~l~~l~~L~~  178 (497)
                      +++|..+... .+....++++|++|++++|.....    .......+++|++|+++++...  . ......+..+++|+.
T Consensus       145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~  224 (592)
T 3ogk_B          145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS  224 (592)
T ss_dssp             EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred             CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence            9988644433 334445889999999998753222    1223467889999999875542  1 122234457899999


Q ss_pred             EEeeccccCchhHHhhhcCCCCcEEEccCCCCC---hHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccC
Q 010952          179 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT---AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF  255 (497)
Q Consensus       179 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  255 (497)
                      |++.++.+.. .+..+.++++|+.|.++.....   ......+..+++|+.++++++.. ...+..+..+++|+.|++++
T Consensus       225 L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~  302 (592)
T 3ogk_B          225 VKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLY  302 (592)
T ss_dssp             EECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETT
T ss_pred             EeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCC
Confidence            9999888775 5577888999999999754222   11233456778999999987543 33455667789999999999


Q ss_pred             CCCChhHH-HHhhCCCCcCEEeCCCCCCCHhHHH-HHhCCCCCCEeeccC-----------cccchHHHHh-hcCCCCCC
Q 010952          256 NEITDECL-VHLKGLTNLESLNLDSCGIGDEGLV-NLTGLCNLKCLELSD-----------TQVGSSGLRH-LSGLTNLE  321 (497)
Q Consensus       256 ~~~~~~~~-~~l~~~~~L~~L~l~~~~l~~~~~~-~l~~~~~L~~L~l~~-----------~~~~~~~~~~-l~~~~~L~  321 (497)
                      |.+..... ..+..+++|+.|++. +.+.+.... ....+++|++|++.+           +.++...... ...+++|+
T Consensus       303 ~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~  381 (592)
T 3ogk_B          303 ALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELE  381 (592)
T ss_dssp             CCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCS
T ss_pred             CcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCe
Confidence            98775444 346789999999998 434443333 335688999999983           4555543333 45689999


Q ss_pred             EEeccCCCCChHHHHHhcC-CCCCcEEEcC----CCCCCHh-----HHHHhcCCCCCcEEEecCCC--cChHHHHHhh-c
Q 010952          322 SINLSFTGISDGSLRKLAG-LSSLKSLNLD----ARQITDT-----GLAALTSLTGLTHLDLFGAR--ITDSGAAYLR-N  388 (497)
Q Consensus       322 ~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~-~  388 (497)
                      +|++..+.+++..+..+.. +++|+.|++.    .+.+++.     ....+..+++|+.|+++.|.  +++.....+. .
T Consensus       382 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~  461 (592)
T 3ogk_B          382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY  461 (592)
T ss_dssp             EEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHS
T ss_pred             EEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHh
Confidence            9999888888887777765 8999999996    5566642     23345578999999998765  7776666664 4


Q ss_pred             cCCCCeeeecCCCCChhhHHh-hhhcCCCCeecccCCCCCChhHHH-HhhcCCCCcEEEeeCCccChhHHHhh-cCCccc
Q 010952          389 FKNLRSLEICGGGLTDAGVKH-IKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSRITSAGLRHL-KPLKNL  465 (497)
Q Consensus       389 ~~~L~~L~l~~~~l~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~-~l~~~~~L~~L~l~~~~l~~~~~~~l-~~~~~L  465 (497)
                      +++|+.|++++|++++.+... +..+++|++|+|++| .+++.... ....+++|+.|++++|++++.....+ ..+|.+
T Consensus       462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l  540 (592)
T 3ogk_B          462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYW  540 (592)
T ss_dssp             CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC-CCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTE
T ss_pred             CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC-CCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCc
Confidence            899999999999998865544 467899999999999 58776544 44579999999999999988766555 467877


Q ss_pred             ceeecccC
Q 010952          466 RSLTLESC  473 (497)
Q Consensus       466 ~~L~l~~~  473 (497)
                      +...+..+
T Consensus       541 ~~~~~~~~  548 (592)
T 3ogk_B          541 NIELIPSR  548 (592)
T ss_dssp             EEEEECCC
T ss_pred             EEEEecCc
Confidence            77776654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=8.5e-32  Score=264.09  Aligned_cols=320  Identities=20%  Similarity=0.190  Sum_probs=250.0

Q ss_pred             CEEEcCCCCCCChHHHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEee
Q 010952          103 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS  182 (497)
Q Consensus       103 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  182 (497)
                      +.++.++... . .+|..+  .+++++|++++|......+..+..+++|++|++++| .+....+..+..+++|++|+++
T Consensus        14 ~~v~c~~~~l-~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~   88 (477)
T 2id5_A           14 RAVLCHRKRF-V-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLR   88 (477)
T ss_dssp             TEEECCSCCC-S-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCc-C-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECC
Confidence            4566665542 2 123222  358889999886533334567888899999999885 4555566778888899999998


Q ss_pred             ccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhH
Q 010952          183 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC  262 (497)
Q Consensus       183 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  262 (497)
                      +|.++......+.++++|++|++++|.+....+..+..+++|++|++++|.+....+..|+.+++|+.|++++|.+....
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            88888766667788889999999998887766777888889999999988887777777888889999999988888766


Q ss_pred             HHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCC
Q 010952          263 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS  342 (497)
Q Consensus       263 ~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~  342 (497)
                      +..+..+++|+.|++.++.+.......+..+++|++|+++++......+.......+|++|++++|.+.......+..++
T Consensus       169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  248 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV  248 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred             hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence            67788888999999988887766666677788899999988765544444444455899999998888776667788888


Q ss_pred             CCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeeccc
Q 010952          343 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS  422 (497)
Q Consensus       343 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~  422 (497)
                      +|+.|++++|.++......+..+++|+.|++++|.+....+..+..+++|+.|++++|.++......+..+++|++|+++
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  328 (477)
T 2id5_A          249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD  328 (477)
T ss_dssp             TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred             ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence            99999999888887666667788899999999998888777778888899999999998888777777788889999998


Q ss_pred             CCCCCC
Q 010952          423 QNCNLT  428 (497)
Q Consensus       423 ~~~~l~  428 (497)
                      +| .+.
T Consensus       329 ~N-~l~  333 (477)
T 2id5_A          329 SN-PLA  333 (477)
T ss_dssp             SS-CEE
T ss_pred             CC-Ccc
Confidence            88 444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=5.6e-31  Score=251.17  Aligned_cols=316  Identities=20%  Similarity=0.185  Sum_probs=167.6

Q ss_pred             CCCCCEEeccCccccccccc-cccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcE
Q 010952          124 LINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL  202 (497)
Q Consensus       124 l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  202 (497)
                      ++++++++++++. +...+. .+..+++|++|++++|. +.+..+..+..+++|++|+++++.+....+..+.++++|++
T Consensus        44 l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           44 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            4566666666543 332322 24555666666665532 33333345555556666666555555544455555555555


Q ss_pred             EEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCC
Q 010952          203 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI  282 (497)
Q Consensus       203 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l  282 (497)
                      |++++|.+....+..+..+++|++|++++|.+....+..++.+++|+.|++++|.+...   .+..              
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~--------------  184 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSL--------------  184 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGG--------------
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---cccc--------------
Confidence            55555555443222334555555555555555444444445555555555555544432   1233              


Q ss_pred             CHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHh
Q 010952          283 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL  362 (497)
Q Consensus       283 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  362 (497)
                                +++|+.+++++|.+..     +...++|+.|++++|.+....   ....++|+.|++++|.++..  ..+
T Consensus       185 ----------l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~l~~~--~~l  244 (390)
T 3o6n_A          185 ----------IPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVR---GPVNVELTILKLQHNNLTDT--AWL  244 (390)
T ss_dssp             ----------CTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEE---CCCCSSCCEEECCSSCCCCC--GGG
T ss_pred             ----------ccccceeecccccccc-----cCCCCcceEEECCCCeeeecc---ccccccccEEECCCCCCccc--HHH
Confidence                      4444444444444322     122344555555555444321   11234566666666655543  344


Q ss_pred             cCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCc
Q 010952          363 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV  442 (497)
Q Consensus       363 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~  442 (497)
                      ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++. +..+..+++|++|++++| .++. .+..+..+++|+
T Consensus       245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~l~~L~  321 (390)
T 3o6n_A          245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHN-HLLH-VERNQPQFDRLE  321 (390)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSS-CCCC-CGGGHHHHTTCS
T ss_pred             cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCC-ccee-cCccccccCcCC
Confidence            5566666666666666655555556666666666666666554 223344566666666666 5553 233455566666


Q ss_pred             EEEeeCCccChhHHHhhcCCcccceeecccCCCCHHHHHHHh
Q 010952          443 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ  484 (497)
Q Consensus       443 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~  484 (497)
                      .|++++|+++...   +..+++|+.|++++|+++......+.
T Consensus       322 ~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~~  360 (390)
T 3o6n_A          322 NLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALF  360 (390)
T ss_dssp             EEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHHT
T ss_pred             EEECCCCccceeC---chhhccCCEEEcCCCCccchhHHHHH
Confidence            7777666665532   45566677777777777666665554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.96  E-value=6.5e-31  Score=267.91  Aligned_cols=413  Identities=21%  Similarity=0.245  Sum_probs=273.8

Q ss_pred             CCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCcccccccc-ccccCCCCCCE
Q 010952           75 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL-VNLKGLMKLES  153 (497)
Q Consensus        75 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~  153 (497)
                      +++++|++++| .++...+.+|.++++|++|++++|. +....+.+|.++++|++|++++|. +...+ ..+.++++|++
T Consensus        52 ~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~  128 (635)
T 4g8a_A           52 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK  128 (635)
T ss_dssp             TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCE
T ss_pred             cCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCE
Confidence            38999999998 7887777889999999999999998 566667789999999999999975 54444 56899999999


Q ss_pred             EeccCCCCCCccccccccCCCCCCEEEeeccccCch-hHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCC----CcEEE
Q 010952          154 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLN  228 (497)
Q Consensus       154 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~----L~~L~  228 (497)
                      |++++|. +.......++++++|++|++++|.+... .+..+..+++|++|++++|.+.+..+..+..+.+    ...++
T Consensus       129 L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~  207 (635)
T 4g8a_A          129 LVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD  207 (635)
T ss_dssp             EECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred             EECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhh
Confidence            9999964 5555556789999999999999998753 4567889999999999999987755555544322    33566


Q ss_pred             cCCCCCChhHh------------------------HhhhcCCCCCEEEccCCCCC------hh-----------------
Q 010952          229 LNRCQLSDDGC------------------------EKFSKIGSLKVLNLGFNEIT------DE-----------------  261 (497)
Q Consensus       229 l~~~~~~~~~~------------------------~~l~~l~~L~~L~l~~~~~~------~~-----------------  261 (497)
                      ++.+.+....+                        ..+..+..++...+..+...      ..                 
T Consensus       208 ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~  287 (635)
T 4g8a_A          208 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR  287 (635)
T ss_dssp             CTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred             cccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence            66655443222                        12223333333322110000      00                 


Q ss_pred             ----------HHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHH-------------------HH
Q 010952          262 ----------CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-------------------LR  312 (497)
Q Consensus       262 ----------~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~-------------------~~  312 (497)
                                ....+....+++.+.+..+.+...  ..+.....++.|++.++.+....                   ..
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  365 (635)
T 4g8a_A          288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF  365 (635)
T ss_dssp             EECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC
T ss_pred             hhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc
Confidence                      000000111222222221111000  01122233444444333221110                   00


Q ss_pred             hhcCCCCCCEEeccCCCCChH--HHH-----------------------HhcCCCCCcEEEcCCCCCCHh-HHHHhcCCC
Q 010952          313 HLSGLTNLESINLSFTGISDG--SLR-----------------------KLAGLSSLKSLNLDARQITDT-GLAALTSLT  366 (497)
Q Consensus       313 ~l~~~~~L~~L~l~~~~~~~~--~~~-----------------------~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~  366 (497)
                      ....+++|+.++++.|.+...  .+.                       .+..+++|+.+++..+..... ....+..++
T Consensus       366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~  445 (635)
T 4g8a_A          366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR  445 (635)
T ss_dssp             CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred             ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc
Confidence            112345566666655544211  111                       223455666666665433222 123455678


Q ss_pred             CCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCC-hhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEE
Q 010952          367 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN  445 (497)
Q Consensus       367 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~  445 (497)
                      +++.++++.|.+....+..+..+++|+.|++++|.+. ...+..+..+++|++|+|++| .+++..+..+.++++|++|+
T Consensus       446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~  524 (635)
T 4g8a_A          446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLN  524 (635)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEE
Confidence            8889999998887776777788999999999999744 445567788999999999999 89998888999999999999


Q ss_pred             eeCCccChhHHHhhcCCcccceeecccCCCCHHHHHHHhhcCC-CCCccCCC
Q 010952          446 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL-PNLVSFRP  496 (497)
Q Consensus       446 l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-p~L~~l~~  496 (497)
                      +++|.+++..+..+..+++|+.|++++|.++......+.  .+ ++|+.|+.
T Consensus       525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~l~~~L~~L~L  574 (635)
T 4g8a_A          525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ--HFPSSLAFLNL  574 (635)
T ss_dssp             CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT--CCCTTCCEEEC
T ss_pred             CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH--hhhCcCCEEEe
Confidence            999999998888899999999999999999887666664  44 56776643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=1.5e-29  Score=241.40  Aligned_cols=314  Identities=17%  Similarity=0.182  Sum_probs=216.5

Q ss_pred             CCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCC
Q 010952           98 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK  177 (497)
Q Consensus        98 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  177 (497)
                      .++++++|+++++. +....+..+..+++|++|++++|......+..+..+++|++|++++|. +....+..+..+++|+
T Consensus        43 ~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred             ccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCC
Confidence            36899999999987 455556678999999999999975443344578999999999999965 5556667789999999


Q ss_pred             EEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCC
Q 010952          178 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE  257 (497)
Q Consensus       178 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  257 (497)
                      +|+++++.+.......+.++++|++|++++|.+....+..+..+++|++|++++|.+...   .++.+++|+.+++++|.
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence            999999999976666678999999999999999887677789999999999999998764   35678999999999998


Q ss_pred             CChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHH
Q 010952          258 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK  337 (497)
Q Consensus       258 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  337 (497)
                      +..     +...++|+.|++++|.+.....   ...++|+.|++++|.+...  ..+..+++|++|++++|.+....+. 
T Consensus       198 l~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~-  266 (390)
T 3o6n_A          198 LST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH-  266 (390)
T ss_dssp             CSE-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG-
T ss_pred             ccc-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh-
Confidence            764     2345678888888877654321   1234566666666655432  2344455555555555544443333 


Q ss_pred             hcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCC
Q 010952          338 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT  417 (497)
Q Consensus       338 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~  417 (497)
                                             .+..+++|+.|++++|.++.. +..+..+++|+.|++++|.+... +..+..+++|+
T Consensus       267 -----------------------~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~  321 (390)
T 3o6n_A          267 -----------------------PFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLE  321 (390)
T ss_dssp             -----------------------GGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCS
T ss_pred             -----------------------HccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcceec-CccccccCcCC
Confidence                                   444445555555555544432 12223455666666666665544 33345556666


Q ss_pred             eecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHH
Q 010952          418 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL  456 (497)
Q Consensus       418 ~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~  456 (497)
                      +|++++| .++...   +..+++|+.|++++|++.....
T Consensus       322 ~L~L~~N-~i~~~~---~~~~~~L~~L~l~~N~~~~~~~  356 (390)
T 3o6n_A          322 NLYLDHN-SIVTLK---LSTHHTLKNLTLSHNDWDCNSL  356 (390)
T ss_dssp             EEECCSS-CCCCCC---CCTTCCCSEEECCSSCEEHHHH
T ss_pred             EEECCCC-ccceeC---chhhccCCEEEcCCCCccchhH
Confidence            6666666 454432   4556667777777776665433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=4.1e-30  Score=258.36  Aligned_cols=315  Identities=20%  Similarity=0.182  Sum_probs=161.1

Q ss_pred             CCCCCEEeccCcccccccc-ccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcE
Q 010952          124 LINLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL  202 (497)
Q Consensus       124 l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  202 (497)
                      +.+++.++++++. +...+ ..+..+++|++|++++|. +.+..+..+..+++|++|++++|.++...+..+.++++|++
T Consensus        50 l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            4566677766643 33332 234566666666666643 44444445666666666666666666655555666666666


Q ss_pred             EEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCC
Q 010952          203 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI  282 (497)
Q Consensus       203 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l  282 (497)
                      |++++|.+....+..++.+++|++|++++|.+....+..++.+++|+.|++++|.+....   +..+++|+.+++++|.+
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence            666666665433334456666666666666665555555566666666666666555321   33445555666555544


Q ss_pred             CHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHh
Q 010952          283 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL  362 (497)
Q Consensus       283 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  362 (497)
                      ..     +...++|+.|++++|.+.....   ...++|+.|++++|.+                        +..  ..+
T Consensus       205 ~~-----l~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l------------------------~~~--~~l  250 (597)
T 3oja_B          205 ST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNL------------------------TDT--AWL  250 (597)
T ss_dssp             SE-----EECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCC------------------------CCC--GGG
T ss_pred             cc-----ccCCchhheeeccCCccccccc---ccCCCCCEEECCCCCC------------------------CCC--hhh
Confidence            32     1233445555555554433211   1123455555555544                        431  233


Q ss_pred             cCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCc
Q 010952          363 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV  442 (497)
Q Consensus       363 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~  442 (497)
                      ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++. +..+..+++|+.|+|++| .++. +|..+..+++|+
T Consensus       251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N-~l~~-i~~~~~~l~~L~  327 (597)
T 3oja_B          251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHN-HLLH-VERNQPQFDRLE  327 (597)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSS-CCCC-CGGGHHHHTTCS
T ss_pred             ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCC-CCCc-cCcccccCCCCC
Confidence            4444555555555544444444444445555555555544443 222233455555555555 3442 233344445555


Q ss_pred             EEEeeCCccChhHHHhhcCCcccceeecccCCCCHHHHHHH
Q 010952          443 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL  483 (497)
Q Consensus       443 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l  483 (497)
                      .|++++|+++...   +..+++|+.|++++|+++......+
T Consensus       328 ~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~  365 (597)
T 3oja_B          328 NLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRAL  365 (597)
T ss_dssp             EEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHH
T ss_pred             EEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHHH
Confidence            5555555544321   3444555555555555554444433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.96  E-value=2.5e-29  Score=243.04  Aligned_cols=346  Identities=20%  Similarity=0.136  Sum_probs=238.5

Q ss_pred             CCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCE
Q 010952           50 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  129 (497)
Q Consensus        50 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  129 (497)
                      +++|++|+++++.+++. + .++.+++|++|++++| .+.+.   .++.+++|++|++++|.. ... +  ++++++|++
T Consensus        41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n-~l~~~---~~~~l~~L~~L~Ls~N~l-~~~-~--~~~l~~L~~  110 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSN-NITTL---DLSQNTNLTYLACDSNKL-TNL-D--VTPLTKLTY  110 (457)
T ss_dssp             HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSS-CCSCC---CCTTCTTCSEEECCSSCC-SCC-C--CTTCTTCCE
T ss_pred             cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCC-cCCeE---ccccCCCCCEEECcCCCC-cee-e--cCCCCcCCE
Confidence            67999999999888753 3 6888999999999998 56653   278889999999999884 332 2  788999999


Q ss_pred             EeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCC
Q 010952          130 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP  209 (497)
Q Consensus       130 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  209 (497)
                      |++++|. +...+  ++.+++|++|++++|. +...   .+..+++|++|++++|......  .+..+++|++|++++|.
T Consensus       111 L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          111 LNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             EECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred             EECCCCc-CCeec--CCCCCcCCEEECCCCc-ccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence            9999864 44432  7888999999999865 3332   3778889999999888433222  46778889999999998


Q ss_pred             CChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHH
Q 010952          210 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN  289 (497)
Q Consensus       210 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~  289 (497)
                      +.+. +  +..+++|+.|++++|.+...   .++.+++|+.|++++|.+.+. +  +..+++|+.|++++|.+....   
T Consensus       182 l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~---  249 (457)
T 3bz5_A          182 ITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD---  249 (457)
T ss_dssp             CCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---
T ss_pred             ccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC---
Confidence            8773 2  77888999999999888764   367788999999999888863 2  677888999999888776643   


Q ss_pred             HhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHH--------HH
Q 010952          290 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL--------AA  361 (497)
Q Consensus       290 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--------~~  361 (497)
                      ...+++|+.|+++.+              +|+.+++++|......+  ...+++|+.|++++|......+        -.
T Consensus       250 ~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~  313 (457)
T 3bz5_A          250 VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD  313 (457)
T ss_dssp             CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred             HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence            345666666665543              23334444443222111  2334455555554443221110        01


Q ss_pred             hcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCC
Q 010952          362 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL  441 (497)
Q Consensus       362 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L  441 (497)
                      +..+++|+.|++++|++++.   .+..+++|+.|++++|++.+.        +.|..|.+++| .+...     ..+..|
T Consensus       314 l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l--------~~L~~L~l~~n-~l~g~-----~~~~~l  376 (457)
T 3bz5_A          314 LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF--------SSVGKIPALNN-NFEAE-----GQTITM  376 (457)
T ss_dssp             CTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBC--------TTGGGSSGGGT-SEEEE-----EEEEEC
T ss_pred             hhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCc--------cccccccccCC-cEEec-----ceeeec
Confidence            23446777777777777764   266777778888877777752        45666667666 45442     345667


Q ss_pred             cEEEeeCCccChhHHHhh
Q 010952          442 VSLNVSNSRITSAGLRHL  459 (497)
Q Consensus       442 ~~L~l~~~~l~~~~~~~l  459 (497)
                      ..+++++|.+++.++..+
T Consensus       377 ~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          377 PKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             CCBCCBTTBEEEECCTTC
T ss_pred             CccccccCcEEEEcChhH
Confidence            778888888877665443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.96  E-value=2.6e-29  Score=242.92  Aligned_cols=321  Identities=18%  Similarity=0.176  Sum_probs=175.1

Q ss_pred             cCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCC
Q 010952           49 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV  128 (497)
Q Consensus        49 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  128 (497)
                      .+++|++|+++++.+++.   .++.+++|++|++++| .+.+.   .++.+++|++|++++|.. ... +  ++++++|+
T Consensus        62 ~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N-~l~~~---~~~~l~~L~~L~L~~N~l-~~l-~--~~~l~~L~  130 (457)
T 3bz5_A           62 KLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSN-KLTNL---DVTPLTKLTYLNCDTNKL-TKL-D--VSQNPLLT  130 (457)
T ss_dssp             GCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSS-CCSCC---CCTTCTTCCEEECCSSCC-SCC-C--CTTCTTCC
T ss_pred             ccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCC-CCcee---ecCCCCcCCEEECCCCcC-Cee-c--CCCCCcCC
Confidence            456677777777666542   2566667777777666 44442   256666777777776653 222 2  56666777


Q ss_pred             EEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCC
Q 010952          129 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC  208 (497)
Q Consensus       129 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  208 (497)
                      +|++++|. +...  .+..+++|++|++++|..+...   .+..+++|++|+++++.++...   +..+++|+.|++++|
T Consensus       131 ~L~l~~N~-l~~l--~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N  201 (457)
T 3bz5_A          131 YLNCARNT-LTEI--DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTN  201 (457)
T ss_dssp             EEECTTSC-CSCC--CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSS
T ss_pred             EEECCCCc-ccee--ccccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec---cccCCCCCEEECcCC
Confidence            77776653 3332  2566666777777665444322   3556666777777666666532   556666777777766


Q ss_pred             CCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCC-----
Q 010952          209 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-----  283 (497)
Q Consensus       209 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~-----  283 (497)
                      .+...   .++.+++|+.|++++|.+.+. +  ++.+++|+.|++++|.+....   +..+++|+.++++.+.+.     
T Consensus       202 ~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~~L~l~  272 (457)
T 3bz5_A          202 NITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEIDLT  272 (457)
T ss_dssp             CCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCSCCCCT
T ss_pred             cCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCCEEECC
Confidence            66553   356666777777777666652 2  556666777777766665432   334455555544433211     


Q ss_pred             -----HhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhH
Q 010952          284 -----DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG  358 (497)
Q Consensus       284 -----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  358 (497)
                           ...+  +..+++|+.|++++|......+   ...++|+.+++             .++++|+.|++++|.++.. 
T Consensus       273 ~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~---~~~~~L~~L~l-------------~~~~~L~~L~L~~N~l~~l-  333 (457)
T 3bz5_A          273 HNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD---CQAAGITELDL-------------SQNPKLVYLYLNNTELTEL-  333 (457)
T ss_dssp             TCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE---CTTCCCSCCCC-------------TTCTTCCEEECTTCCCSCC-
T ss_pred             CCccCCccc--ccccccCCEEECCCCcccceec---cCCCcceEech-------------hhcccCCEEECCCCccccc-
Confidence                 1000  1123333333333332211111   01122222222             2335666666666666653 


Q ss_pred             HHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHH
Q 010952          359 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE  433 (497)
Q Consensus       359 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~  433 (497)
                        .+..+++|+.|++++|++.+        ++.|..|++++|.+.+.     +.+..|..+++++| +++..+|.
T Consensus       334 --~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N-~l~g~ip~  392 (457)
T 3bz5_A          334 --DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNN-SLTIAVSP  392 (457)
T ss_dssp             --CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTT-BEEEECCT
T ss_pred             --ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccC-cEEEEcCh
Confidence              25566667777777766654        34555556666655544     23455666666666 55554443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.96  E-value=1.1e-29  Score=245.26  Aligned_cols=371  Identities=15%  Similarity=0.082  Sum_probs=233.9

Q ss_pred             CCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCC-------------CCEEEcCCCCCCChH
Q 010952           50 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN-------------LTSLSFRRNNAITAQ  116 (497)
Q Consensus        50 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-------------L~~L~l~~~~~~~~~  116 (497)
                      ..+|++|+++++.+ +..|..++++++|++|++++| .+.+..+..++.+++             +++|++++|.. .. 
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n-~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l-~~-   85 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWS-EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL-SS-   85 (454)
T ss_dssp             -------------------------CCHHHHHHHHH-HHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC-SC-
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCC-cccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc-cc-
Confidence            46899999999988 678888999999999999987 555555666666554             59999999874 32 


Q ss_pred             HHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCC-CCCCEEEeeccccCchhHHhhh
Q 010952          117 GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLK  195 (497)
Q Consensus       117 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~  195 (497)
                      .|.   -.++|++|++++|. +...+.   .+++|++|++++|. +..     +... ++|++|++++|.++. .+ .+.
T Consensus        86 lp~---~~~~L~~L~l~~n~-l~~lp~---~~~~L~~L~l~~n~-l~~-----l~~~~~~L~~L~L~~n~l~~-lp-~~~  150 (454)
T 1jl5_A           86 LPE---LPPHLESLVASCNS-LTELPE---LPQSLKSLLVDNNN-LKA-----LSDLPPLLEYLGVSNNQLEK-LP-ELQ  150 (454)
T ss_dssp             CCS---CCTTCSEEECCSSC-CSSCCC---CCTTCCEEECCSSC-CSC-----CCSCCTTCCEEECCSSCCSS-CC-CCT
T ss_pred             CCC---CcCCCCEEEccCCc-CCcccc---ccCCCcEEECCCCc-cCc-----ccCCCCCCCEEECcCCCCCC-Cc-ccC
Confidence            121   24689999998864 444433   24789999998854 322     2222 689999999888886 33 588


Q ss_pred             cCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEE
Q 010952          196 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL  275 (497)
Q Consensus       196 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  275 (497)
                      ++++|++|++++|.+.+ .+.   ...+|++|++++|.+... + .++.+++|+.|++++|.+....    ...++|+.|
T Consensus       151 ~l~~L~~L~l~~N~l~~-lp~---~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~----~~~~~L~~L  220 (454)
T 1jl5_A          151 NSSFLKIIDVDNNSLKK-LPD---LPPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLP----DLPLSLESI  220 (454)
T ss_dssp             TCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCC----CCCTTCCEE
T ss_pred             CCCCCCEEECCCCcCcc-cCC---CcccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCC----CCcCcccEE
Confidence            88999999999998765 232   235899999999888763 3 5788899999999988877421    123588999


Q ss_pred             eCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCC
Q 010952          276 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT  355 (497)
Q Consensus       276 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  355 (497)
                      ++++|.+....  .+..+++|++|++++|.+....    ...++|++|++++|.+....    ...++|+.|++++|.++
T Consensus       221 ~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~----~~~~~L~~L~l~~N~l~~l~----~~~~~L~~L~ls~N~l~  290 (454)
T 1jl5_A          221 VAGNNILEELP--ELQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIFS  290 (454)
T ss_dssp             ECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCC----SCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS
T ss_pred             ECcCCcCCccc--ccCCCCCCCEEECCCCcCCccc----ccccccCEEECCCCcccccC----cccCcCCEEECcCCccC
Confidence            99988776432  3677888999999888776421    13478899999888776421    12478889999888877


Q ss_pred             HhHHHHhcCCCCCcEEEecCCCcChHHHHHhhcc-CCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHH
Q 010952          356 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL  434 (497)
Q Consensus       356 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  434 (497)
                      ...    ...++|+.|++++|.+++.     ... ++|+.|++++|.+.+.. .   .+++|++|++++| .++.. +. 
T Consensus       291 ~l~----~~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~lp-~---~~~~L~~L~L~~N-~l~~l-p~-  354 (454)
T 1jl5_A          291 GLS----ELPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIELP-A---LPPRLERLIASFN-HLAEV-PE-  354 (454)
T ss_dssp             EES----CCCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSS-CCSCC-CC-
T ss_pred             ccc----CcCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccccc-c---cCCcCCEEECCCC-ccccc-cc-
Confidence            621    1236888888888887752     223 58888888888887642 2   2578888888888 66642 22 


Q ss_pred             hhcCCCCcEEEeeCCccCh--hHHHhhcCC-------------cccceeecccCCCCH
Q 010952          435 ISGLTGLVSLNVSNSRITS--AGLRHLKPL-------------KNLRSLTLESCKVTA  477 (497)
Q Consensus       435 l~~~~~L~~L~l~~~~l~~--~~~~~l~~~-------------~~L~~L~l~~~~~~~  477 (497)
                        .+++|++|++++|++++  .++..+..+             ++|+.|++++|+++.
T Consensus       355 --~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          355 --LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE  410 (454)
T ss_dssp             --CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred             --hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence              46788888888888877  455555544             788888888888775

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=1.1e-28  Score=247.92  Aligned_cols=312  Identities=16%  Similarity=0.164  Sum_probs=250.1

Q ss_pred             CCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCE
Q 010952           99 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS  178 (497)
Q Consensus        99 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  178 (497)
                      +.+++.|+++++. +....+..++++++|++|++++|......+..+..+++|++|++++|. +....+..++.+++|++
T Consensus        50 l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCE
Confidence            6789999999987 455666778999999999999976444344588999999999999965 66666677899999999


Q ss_pred             EEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCC
Q 010952          179 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI  258 (497)
Q Consensus       179 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  258 (497)
                      |++++|.++...+..+.++++|++|++++|.+.+..+..++.+++|+.|++++|.+....   ++.+++|+.|++++|.+
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence            999999999776677899999999999999998877778999999999999999987653   56689999999999988


Q ss_pred             ChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHh
Q 010952          259 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL  338 (497)
Q Consensus       259 ~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l  338 (497)
                      ..     +...++|+.|++++|.+.....   ...++|+.|++++|.+...  ..+..+++|+.|++++|.+....+..+
T Consensus       205 ~~-----l~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~  274 (597)
T 3oja_B          205 ST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF  274 (597)
T ss_dssp             SE-----EECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             cc-----ccCCchhheeeccCCccccccc---ccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh
Confidence            74     3456789999999998865432   1346899999999988763  567788999999999998887777778


Q ss_pred             cCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCe
Q 010952          339 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL  418 (497)
Q Consensus       339 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~  418 (497)
                      ..+++|+.|++++|.++.. +..+..+++|+.|++++|.+... |..+..+++|+.|++++|.+....   +..+++|+.
T Consensus       275 ~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~  349 (597)
T 3oja_B          275 VKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKN  349 (597)
T ss_dssp             TTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSE
T ss_pred             cCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCcC---hhhcCCCCE
Confidence            8888999999988888764 23334578888888888877753 444566778888888888777652   445677777


Q ss_pred             ecccCCCCCChhH
Q 010952          419 LNLSQNCNLTDKT  431 (497)
Q Consensus       419 L~l~~~~~l~~~~  431 (497)
                      |++++| .+....
T Consensus       350 L~l~~N-~~~~~~  361 (597)
T 3oja_B          350 LTLSHN-DWDCNS  361 (597)
T ss_dssp             EECCSS-CEEHHH
T ss_pred             EEeeCC-CCCChh
Confidence            777777 555443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.94  E-value=1.8e-27  Score=221.60  Aligned_cols=289  Identities=20%  Similarity=0.187  Sum_probs=165.7

Q ss_pred             CCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEc
Q 010952          150 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL  229 (497)
Q Consensus       150 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  229 (497)
                      +++.++++++. +.. .+..+  .++++.|+++++.++...+..+.++++|++|++++|.+....+..++.+++|++|++
T Consensus        32 ~l~~l~~~~~~-l~~-lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLG-LEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSC-CCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCC-ccc-cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            57777777633 221 22222  256777777777777665556677777777777777766655566666777777777


Q ss_pred             CCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCH--hHHHHHhCCCCCCEeeccCcccc
Q 010952          230 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVG  307 (497)
Q Consensus       230 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~--~~~~~l~~~~~L~~L~l~~~~~~  307 (497)
                      ++|.+..... .+  .++|+.|++++|.+....+..+..+++|+.|++++|.+..  ..+..+..+++|++|++      
T Consensus       108 s~n~l~~l~~-~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l------  178 (330)
T 1xku_A          108 SKNQLKELPE-KM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI------  178 (330)
T ss_dssp             CSSCCSBCCS-SC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC------
T ss_pred             CCCcCCccCh-hh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC------
Confidence            7766553221 11  1456666666665555444445555555666555554432  12233344444444444      


Q ss_pred             hHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhh
Q 010952          308 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR  387 (497)
Q Consensus       308 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  387 (497)
                                        ++|.+..... .  -.++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+.
T Consensus       179 ------------------~~n~l~~l~~-~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  237 (330)
T 1xku_A          179 ------------------ADTNITTIPQ-G--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA  237 (330)
T ss_dssp             ------------------CSSCCCSCCS-S--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred             ------------------CCCccccCCc-c--ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence                              4444332110 0  124566666666655554445555666666666666666655444556


Q ss_pred             ccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhh------cCCCCcEEEeeCCccCh--hHHHhh
Q 010952          388 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS------GLTGLVSLNVSNSRITS--AGLRHL  459 (497)
Q Consensus       388 ~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~------~~~~L~~L~l~~~~l~~--~~~~~l  459 (497)
                      .+++|+.|++++|.++.. +..+..+++|++|++++| .++...+..+.      ..+.++.|++++|++..  ..+..+
T Consensus       238 ~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f  315 (330)
T 1xku_A          238 NTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF  315 (330)
T ss_dssp             GSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred             CCCCCCEEECCCCcCccC-ChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCcccc
Confidence            666666666666666643 344556667777777776 56554444443      23677888888887654  344567


Q ss_pred             cCCcccceeecccCC
Q 010952          460 KPLKNLRSLTLESCK  474 (497)
Q Consensus       460 ~~~~~L~~L~l~~~~  474 (497)
                      ..+++++.+++++|+
T Consensus       316 ~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          316 RCVYVRAAVQLGNYK  330 (330)
T ss_dssp             TTCCCGGGEEC----
T ss_pred             ccccceeEEEecccC
Confidence            778888888888763

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.94  E-value=1.2e-27  Score=231.13  Aligned_cols=372  Identities=17%  Similarity=0.070  Sum_probs=186.8

Q ss_pred             cCCceeEEEeeCCCCChHHHHHhcCCCC-------------cCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCCh
Q 010952           49 QGSSLLSVDLSGSDVTDSGLIHLKDCSN-------------LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA  115 (497)
Q Consensus        49 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~-------------L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  115 (497)
                      ++++|++|+++++.+.+..|..++.+.+             +++|++++| .+.+.. .   -.++|++|++++|.. ..
T Consensus        32 ~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp-~---~~~~L~~L~l~~n~l-~~  105 (454)
T 1jl5_A           32 NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLP-E---LPPHLESLVASCNSL-TE  105 (454)
T ss_dssp             --CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCC-S---CCTTCSEEECCSSCC-SS
T ss_pred             cccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCC-C---CcCCCCEEEccCCcC-Cc
Confidence            4566666666666555455555555544             366666666 343311 1   125677777776653 22


Q ss_pred             HHHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhh
Q 010952          116 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK  195 (497)
Q Consensus       116 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~  195 (497)
                       +|.   .+++|++|++++|. +...+..   .++|++|++++|. +.. . +.+..+++|++|++++|.++.. +.   
T Consensus       106 -lp~---~~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~-l~~-l-p~~~~l~~L~~L~l~~N~l~~l-p~---  170 (454)
T 1jl5_A          106 -LPE---LPQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQ-LEK-L-PELQNSSFLKIIDVDNNSLKKL-PD---  170 (454)
T ss_dssp             -CCC---CCTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSC-CSS-C-CCCTTCTTCCEEECCSSCCSCC-CC---
T ss_pred             -ccc---ccCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCC-CCC-C-cccCCCCCCCEEECCCCcCccc-CC---
Confidence             221   23567777776643 2222111   1467777777643 222 2 2466677777777776666541 11   


Q ss_pred             cCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEE
Q 010952          196 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL  275 (497)
Q Consensus       196 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  275 (497)
                      ...+|++|++++|.+.+ .+ .++.+++|+.|++++|.+.+. +.   ..++|+.|++++|.+... + .+..+++|+.|
T Consensus       171 ~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~n~l~~l-p-~~~~l~~L~~L  242 (454)
T 1jl5_A          171 LPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PD---LPLSLESIVAGNNILEEL-P-ELQNLPFLTTI  242 (454)
T ss_dssp             CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEE
T ss_pred             CcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CC---CcCcccEEECcCCcCCcc-c-ccCCCCCCCEE
Confidence            12467777777776655 23 466667777777777766542 11   124677777777766532 2 25566777777


Q ss_pred             eCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCC
Q 010952          276 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT  355 (497)
Q Consensus       276 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  355 (497)
                      ++++|.+.....    ..++|++|++++|.+....    ...++|++|++++|.+....    .-.++|+.|++++|.++
T Consensus       243 ~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~----~~~~~L~~L~ls~N~l~~l~----~~~~~L~~L~l~~N~l~  310 (454)
T 1jl5_A          243 YADNNLLKTLPD----LPPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIFSGLS----ELPPNLYYLNASSNEIR  310 (454)
T ss_dssp             ECCSSCCSSCCS----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSEES----CCCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCcccc----cccccCEEECCCCcccccC----cccCcCCEEECcCCccCccc----CcCCcCCEEECcCCcCC
Confidence            777766553211    2356777777776655421    12356777777777665411    01256777777777666


Q ss_pred             HhHHHHhcCC-CCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCCh--hHH
Q 010952          356 DTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD--KTL  432 (497)
Q Consensus       356 ~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~  432 (497)
                      .     +..+ ++|+.|++++|++++. +.   .+++|+.|++++|.++....    .+++|++|++++| .++.  ..|
T Consensus       311 ~-----i~~~~~~L~~L~Ls~N~l~~l-p~---~~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N-~l~~l~~ip  376 (454)
T 1jl5_A          311 S-----LCDLPPSLEELNVSNNKLIEL-PA---LPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYN-PLREFPDIP  376 (454)
T ss_dssp             E-----ECCCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS-CCSSCCCCC
T ss_pred             c-----ccCCcCcCCEEECCCCccccc-cc---cCCcCCEEECCCCccccccc----hhhhccEEECCCC-CCCcCCCCh
Confidence            4     2223 4677777777766652 21   24677777777777665432    3567777777777 5555  344


Q ss_pred             HHhhcC-------------CCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCHHH
Q 010952          433 ELISGL-------------TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND  479 (497)
Q Consensus       433 ~~l~~~-------------~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~  479 (497)
                      ..+..+             ++|+.|++++|++++..  .+  -++++.|.+.+|.+....
T Consensus       377 ~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~--~i--P~sl~~L~~~~~~~~~~~  432 (454)
T 1jl5_A          377 ESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFP--DI--PESVEDLRMNSERVVDPY  432 (454)
T ss_dssp             TTCCEEECCC--------------------------------------------------
T ss_pred             HHHHhhhhcccccccccccCcCCEEECCCCcCCccc--cc--hhhHhheeCcCcccCCcc
Confidence            444444             78999999999988631  11  135788888888776653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.94  E-value=6.2e-27  Score=217.89  Aligned_cols=288  Identities=17%  Similarity=0.191  Sum_probs=191.6

Q ss_pred             CCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEc
Q 010952          126 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL  205 (497)
Q Consensus       126 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  205 (497)
                      +++.++++++. +...+..+.  +.+++|+++++. +.......+..+++|++|+++++.++...+..+.++++|++|++
T Consensus        32 ~l~~l~~~~~~-l~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLG-LEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSC-CCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCC-ccccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            78999998853 444554443  689999999954 55556667899999999999999999887888999999999999


Q ss_pred             cCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCCh--hHHHHhhCCCCcCEEeCCCCCCC
Q 010952          206 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIG  283 (497)
Q Consensus       206 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~l~  283 (497)
                      ++|.+.. .+..+  .++|++|++++|.+....+..++.+++|+.|++++|.+..  ..+..+..+++|+.|++++|.+.
T Consensus       108 s~n~l~~-l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          108 SKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             CSSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCCc-cChhh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            9998875 33322  2799999999999998888889999999999999998864  34456788999999999999876


Q ss_pred             HhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhc
Q 010952          284 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT  363 (497)
Q Consensus       284 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  363 (497)
                      .....   ..++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++.       
T Consensus       185 ~l~~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------  254 (330)
T 1xku_A          185 TIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-------  254 (330)
T ss_dssp             SCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-------
T ss_pred             cCCcc---ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-------
Confidence            43211   12566666666666555444455555566666666555544333344444555555555554442       


Q ss_pred             CCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhh------hcCCCCeecccCCCCCCh--hHHHHh
Q 010952          364 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK------DLSSLTLLNLSQNCNLTD--KTLELI  435 (497)
Q Consensus       364 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~------~l~~L~~L~l~~~~~l~~--~~~~~l  435 (497)
                                       . |..+..+++|+.|++++|+++......+.      ..++++.+++++| .+..  ..+..+
T Consensus       255 -----------------l-p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N-~~~~~~i~~~~f  315 (330)
T 1xku_A          255 -----------------V-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN-PVQYWEIQPSTF  315 (330)
T ss_dssp             -----------------C-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS-SSCGGGSCGGGG
T ss_pred             -----------------C-ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecC-cccccccCcccc
Confidence                             1 22334445555555555555444333332      1255666666666 3332  234455


Q ss_pred             hcCCCCcEEEeeCC
Q 010952          436 SGLTGLVSLNVSNS  449 (497)
Q Consensus       436 ~~~~~L~~L~l~~~  449 (497)
                      ..+.+++.+++++|
T Consensus       316 ~~~~~l~~l~L~~N  329 (330)
T 1xku_A          316 RCVYVRAAVQLGNY  329 (330)
T ss_dssp             TTCCCGGGEEC---
T ss_pred             ccccceeEEEeccc
Confidence            56666666666665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.94  E-value=1.2e-27  Score=222.80  Aligned_cols=290  Identities=18%  Similarity=0.191  Sum_probs=156.7

Q ss_pred             CCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEc
Q 010952          150 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL  229 (497)
Q Consensus       150 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  229 (497)
                      +++.++++++. +.. .+..+  .++++.|+++++.+....+..+.++++|++|++++|.+....+..++.+++|++|++
T Consensus        34 ~l~~l~~~~~~-l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLG-LKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSC-CSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCC-ccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            46666666533 221 12222  245666666666666554555566666666666666655544555555566666666


Q ss_pred             CCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchH
Q 010952          230 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS  309 (497)
Q Consensus       230 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~  309 (497)
                      ++|.+...... +  .++|++|++++|.+....+..+..+++|+.|++++|.+...                      ..
T Consensus       110 ~~n~l~~l~~~-~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~  164 (332)
T 2ft3_A          110 SKNHLVEIPPN-L--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS----------------------GF  164 (332)
T ss_dssp             CSSCCCSCCSS-C--CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG----------------------GS
T ss_pred             CCCcCCccCcc-c--cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC----------------------CC
Confidence            65555432111 1  14455555555544433333344444444444444443210                      01


Q ss_pred             HHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhcc
Q 010952          310 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF  389 (497)
Q Consensus       310 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  389 (497)
                      .+..+..+ +|++|++++|.+.... ..  -.++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+
T Consensus       165 ~~~~~~~l-~L~~L~l~~n~l~~l~-~~--~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l  240 (332)
T 2ft3_A          165 EPGAFDGL-KLNYLRISEAKLTGIP-KD--LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL  240 (332)
T ss_dssp             CTTSSCSC-CCSCCBCCSSBCSSCC-SS--SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred             CcccccCC-ccCEEECcCCCCCccC-cc--ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence            12222333 4555555555443311 11  12456666666666655444455566666667776666666555556666


Q ss_pred             CCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhc------CCCCcEEEeeCCccC--hhHHHhhcC
Q 010952          390 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG------LTGLVSLNVSNSRIT--SAGLRHLKP  461 (497)
Q Consensus       390 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~------~~~L~~L~l~~~~l~--~~~~~~l~~  461 (497)
                      ++|+.|++++|.+... +..+..+++|++|++++| .++...+..+..      .+.|+.|++++|++.  +..+..+..
T Consensus       241 ~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~  318 (332)
T 2ft3_A          241 PTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC  318 (332)
T ss_dssp             TTCCEEECCSSCCCBC-CTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred             CCCCEEECCCCcCeec-ChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccc
Confidence            7777777777766644 344566677777777777 566554444433      356788888888766  445566777


Q ss_pred             CcccceeecccCC
Q 010952          462 LKNLRSLTLESCK  474 (497)
Q Consensus       462 ~~~L~~L~l~~~~  474 (497)
                      +++|+.+++++|.
T Consensus       319 l~~L~~l~l~~n~  331 (332)
T 2ft3_A          319 VTDRLAIQFGNYK  331 (332)
T ss_dssp             BCCSTTEEC----
T ss_pred             cchhhhhhccccc
Confidence            8888888888764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=7.1e-28  Score=221.80  Aligned_cols=238  Identities=17%  Similarity=0.142  Sum_probs=158.1

Q ss_pred             HHHHHHhcC---CceeEEEeeCCCCCh--HHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChH
Q 010952           42 WMDVIASQG---SSLLSVDLSGSDVTD--SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ  116 (497)
Q Consensus        42 ~~~~~~~~~---~~l~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  116 (497)
                      |.++.|...   .++++|+++++.+.+  ..+..++++++|++|++++++.+.+..+..|..+++|++|++++|. +...
T Consensus        38 w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~  116 (313)
T 1ogq_A           38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGA  116 (313)
T ss_dssp             STTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEE
T ss_pred             CcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-eCCc
Confidence            877766543   689999999999887  7788899999999999996336666667778888999999998887 4555


Q ss_pred             HHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCC-CCCEEEeeccccCchhHHhhh
Q 010952          117 GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSGIAYLK  195 (497)
Q Consensus       117 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~  195 (497)
                      .|..+.++++|++|++++|......+..+..+++|++|++++|. +.+..+..+..++ +|++|++++|.++...+..+.
T Consensus       117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~  195 (313)
T 1ogq_A          117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA  195 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred             CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence            67778888888888888865443556667777777777777743 3334555666665 777777777766655555666


Q ss_pred             cCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEE
Q 010952          196 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL  275 (497)
Q Consensus       196 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  275 (497)
                      .++ |++|++++|.+.+..+..+..+++|+.|++++|.+....+. +..+++|+.|++++|.+.+..+..+..+++|+.|
T Consensus       196 ~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  273 (313)
T 1ogq_A          196 NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL  273 (313)
T ss_dssp             GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred             CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEE
Confidence            555 66666666666554555555666666666666655433322 4444555555555555543333444444555555


Q ss_pred             eCCCCCCC
Q 010952          276 NLDSCGIG  283 (497)
Q Consensus       276 ~l~~~~l~  283 (497)
                      ++++|.+.
T Consensus       274 ~Ls~N~l~  281 (313)
T 1ogq_A          274 NVSFNNLC  281 (313)
T ss_dssp             ECCSSEEE
T ss_pred             ECcCCccc
Confidence            55544443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.93  E-value=7.1e-27  Score=217.61  Aligned_cols=287  Identities=17%  Similarity=0.177  Sum_probs=185.3

Q ss_pred             CCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEc
Q 010952          126 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL  205 (497)
Q Consensus       126 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  205 (497)
                      +++.++++++. +...+..+  .++|+.|++++|. +....+..+..+++|++|+++++.++...+..+.++++|++|++
T Consensus        34 ~l~~l~~~~~~-l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLG-LKAVPKEI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSC-CSSCCSCC--CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCC-ccccCCCC--CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            68999999854 55555544  3799999999955 55555678899999999999999999888889999999999999


Q ss_pred             cCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCCh--hHHHHhhCCCCcCEEeCCCCCCC
Q 010952          206 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIG  283 (497)
Q Consensus       206 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~l~  283 (497)
                      ++|.+.. ++..+.  ++|++|++++|.+....+..++.+++|+.|++++|.+..  ..+..+..+ +|+.|++++|.+.
T Consensus       110 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            9998875 333332  799999999999988777778999999999999998863  223334444 7788888777665


Q ss_pred             HhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhc
Q 010952          284 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT  363 (497)
Q Consensus       284 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  363 (497)
                      ..+..   ..++|++|++++|.+....+..+..+++|++|++++|.+....+                        ..+.
T Consensus       186 ~l~~~---~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~------------------------~~~~  238 (332)
T 2ft3_A          186 GIPKD---LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN------------------------GSLS  238 (332)
T ss_dssp             SCCSS---SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT------------------------TGGG
T ss_pred             ccCcc---ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh------------------------hHhh
Confidence            42211   12456666666655554433444445555555555554443333                        3344


Q ss_pred             CCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhh------cCCCCeecccCCCCCC--hhHHHHh
Q 010952          364 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD------LSSLTLLNLSQNCNLT--DKTLELI  435 (497)
Q Consensus       364 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~------l~~L~~L~l~~~~~l~--~~~~~~l  435 (497)
                      .+++|+.|++++|.++.. |..+..+++|+.|++++|.++...+..+..      .++|+.|++++| .+.  +..+..+
T Consensus       239 ~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N-~~~~~~~~~~~~  316 (332)
T 2ft3_A          239 FLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN-PVPYWEVQPATF  316 (332)
T ss_dssp             GCTTCCEEECCSSCCCBC-CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSS-SSCGGGSCGGGG
T ss_pred             CCCCCCEEECCCCcCeec-ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecC-cccccccCcccc
Confidence            445555555555544422 333445555555555555555444333322      245566666666 333  3334455


Q ss_pred             hcCCCCcEEEeeCC
Q 010952          436 SGLTGLVSLNVSNS  449 (497)
Q Consensus       436 ~~~~~L~~L~l~~~  449 (497)
                      ..+++|+.+++++|
T Consensus       317 ~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          317 RCVTDRLAIQFGNY  330 (332)
T ss_dssp             TTBCCSTTEEC---
T ss_pred             cccchhhhhhcccc
Confidence            56666666666655

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=6.5e-28  Score=222.06  Aligned_cols=249  Identities=17%  Similarity=0.185  Sum_probs=158.6

Q ss_pred             CCCcEEEccCCCCCh--HHHHHhhCCCCCcEEEcCC-CCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCE
Q 010952          198 QKLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES  274 (497)
Q Consensus       198 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  274 (497)
                      .+++.|+++++.+.+  ..+..+..+++|++|++++ +.+.+..+..++.+++|++|++++|.+....+..+..+++|+.
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            467778888877765  5666777777777777774 6665555666677777777777777665444445555666666


Q ss_pred             EeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCC-CCcEEEcCCCC
Q 010952          275 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-SLKSLNLDARQ  353 (497)
Q Consensus       275 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~  353 (497)
                      |++++|.+....+..+..+++|++|++++|.+..                        ..+..+..++ +|+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~------------------------~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISG------------------------AIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE------------------------ECCGGGGCCCTTCCEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccC------------------------cCCHHHhhhhhcCcEEECcCCe
Confidence            6666655443333344445555555555554443                        3333444444 55555555555


Q ss_pred             CCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHH
Q 010952          354 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE  433 (497)
Q Consensus       354 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~  433 (497)
                      ++...+..+..++ |+.|++++|.+.+..+..+..+++|+.|++++|.+++..+. +..+++|++|++++| .+++..|.
T Consensus       186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~p~  262 (313)
T 1ogq_A          186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN-RIYGTLPQ  262 (313)
T ss_dssp             EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSS-CCEECCCG
T ss_pred             eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCC-cccCcCCh
Confidence            5443344444444 66666666666655555666677777777777776654333 555677888888887 67766677


Q ss_pred             HhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCC
Q 010952          434 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK  474 (497)
Q Consensus       434 ~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~  474 (497)
                      .+..+++|+.|++++|++++.++.. ..+++|+.+++.+|+
T Consensus       263 ~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          263 GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            7778888888888888877655543 677888888888875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.93  E-value=3.9e-25  Score=206.57  Aligned_cols=260  Identities=18%  Similarity=0.207  Sum_probs=175.9

Q ss_pred             CCchHHHHHHHHhhhhhhccChhhHHHHhhhhcCCCCCchhHHHHHHhcCCceeEEEeeCCCCChHHHHHhcCC--CCcC
Q 010952            1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC--SNLQ   78 (497)
Q Consensus         1 ~lp~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~--~~L~   78 (497)
                      .||+|++.+||+++..      .   ++..|.    .++..|...... ...+++++++++.+.+   ..+..+  ++++
T Consensus        11 ~LP~eil~~If~~L~~------~---d~~~~~----~vc~~W~~~~~~-~~~~~~l~l~~~~~~~---~~~~~~~~~~l~   73 (336)
T 2ast_B           11 SLPDELLLGIFSCLCL------P---ELLKVS----GVCKRWYRLASD-ESLWQTLDLTGKNLHP---DVTGRLLSQGVI   73 (336)
T ss_dssp             SSCHHHHHHHHTTSCH------H---HHHHTT----SSCHHHHHHHTC-STTSSEEECTTCBCCH---HHHHHHHHTTCS
T ss_pred             hCCHHHHHHHHHhCCH------H---HHHHHH----HHHHHHHHHhcC-chhheeeccccccCCH---HHHHhhhhccce
Confidence            4899999999999832      2   222233    889999988764 5679999999988763   345555  7999


Q ss_pred             EEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChH-HHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEecc
Q 010952           79 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ-GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK  157 (497)
Q Consensus        79 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  157 (497)
                      .|+++++ .+.+..+ .+..+++|++|++++|. +... .+..+..+++|++|++++|......+..++.+++|++|+++
T Consensus        74 ~L~l~~n-~l~~~~~-~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~  150 (336)
T 2ast_B           74 AFRCPRS-FMDQPLA-EHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  150 (336)
T ss_dssp             EEECTTC-EECSCCC-SCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             EEEcCCc-cccccch-hhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence            9999997 5554333 35578999999999998 4544 78888999999999999975333455667778888888888


Q ss_pred             CCCCCCcc-ccccccCCCCCCEEEeecc-ccCch-hHHhhhcCC-CCcEEEccCC--CCC-hHHHHHhhCCCCCcEEEcC
Q 010952          158 WCNCITDS-DMKPLSGLTNLKSLQISCS-KVTDS-GIAYLKGLQ-KLTLLNLEGC--PVT-AACLDSLSALGSLFYLNLN  230 (497)
Q Consensus       158 ~~~~~~~~-~~~~l~~l~~L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~l~~~--~~~-~~~~~~l~~l~~L~~L~l~  230 (497)
                      +|..+.+. .+..+..+++|++|+++++ .+++. .+..+..++ +|++|++++|  .++ ...+..+..+++|+.|+++
T Consensus       151 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~  230 (336)
T 2ast_B          151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS  230 (336)
T ss_dssp             TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred             CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence            87555543 2333556777777777777 66654 344556666 7777777776  444 3345555666777777777


Q ss_pred             CCC-CChhHhHhhhcCCCCCEEEccCCC-CChhHHHHhhCCCCcCEEeCCCC
Q 010952          231 RCQ-LSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC  280 (497)
Q Consensus       231 ~~~-~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~  280 (497)
                      +|. +.+..+..++.+++|+.|++++|. +.......+..+++|+.|++++|
T Consensus       231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            666 444455556666666666666662 33222223455666666666655

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=5.9e-26  Score=213.31  Aligned_cols=278  Identities=19%  Similarity=0.230  Sum_probs=147.1

Q ss_pred             CCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEE
Q 010952          173 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN  252 (497)
Q Consensus       173 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  252 (497)
                      |+.....+.+++.++... ..+.  ++|++|++++|.+....+..+..+++|++|++++|.+....+..++.+++|++|+
T Consensus        30 C~~~~~c~~~~~~l~~iP-~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIP-SGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             ECTTSEEECCSTTCSSCC-TTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCeEeeCCCCCccccc-cccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            344444555555555322 2221  3566666666666554444566666666666666666555455556666666666


Q ss_pred             ccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHH-HHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCC
Q 010952          253 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS  331 (497)
Q Consensus       253 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  331 (497)
                      +++|.+....+..+..+++|+.|++++|.+..... ..+..+++|++|++++|.                       .+.
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~-----------------------~~~  163 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD-----------------------TFT  163 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-----------------------SCC
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc-----------------------ccc
Confidence            66666554444445555666666666555543222 233444555555554442                       233


Q ss_pred             hHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhh-
Q 010952          332 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI-  410 (497)
Q Consensus       332 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~-  410 (497)
                      ...+..+.++++|+.|++++|.++...+..+..+++|+.|++++|.+.......+..+++|+.|++++|.+.+..+..+ 
T Consensus       164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  243 (353)
T 2z80_A          164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS  243 (353)
T ss_dssp             EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---
T ss_pred             ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc
Confidence            3223334444555555555555544434444555555555555555554444444445555555555555554322221 


Q ss_pred             --hhcCCCCeecccCCCCCChh----HHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCH
Q 010952          411 --KDLSSLTLLNLSQNCNLTDK----TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA  477 (497)
Q Consensus       411 --~~l~~L~~L~l~~~~~l~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~  477 (497)
                        ...+.++.++++++ .+++.    ++..+..+++|+.|++++|+++......+..+++|++|++++|+++.
T Consensus       244 ~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          244 TGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             ---CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence              12355556666666 45542    34455666677777777776665443334666777777777776654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.91  E-value=4.6e-25  Score=207.22  Aligned_cols=274  Identities=21%  Similarity=0.160  Sum_probs=196.2

Q ss_pred             CCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcE
Q 010952          147 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY  226 (497)
Q Consensus       147 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  226 (497)
                      .|+.....+.+++ .+.. .+..+.  ++|++|+++++.++......+.++++|++|++++|.+.+..+..+.++++|++
T Consensus        29 ~C~~~~~c~~~~~-~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           29 SCDRNGICKGSSG-SLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             EECTTSEEECCST-TCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCeEeeCCCC-Cccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            3455555666653 2332 223332  58999999999999877778999999999999999998876778999999999


Q ss_pred             EEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHH-HHhhCCCCcCEEeCCCC-CCCHhHHHHHhCCCCCCEeeccCc
Q 010952          227 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT  304 (497)
Q Consensus       227 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~L~l~~~  304 (497)
                      |++++|.+....+..++.+++|++|++++|.+..... ..+..+++|+.|++++| .+....+..+..+++|++|++++|
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            9999999988777778999999999999998885443 35778999999999988 466555566778888999999888


Q ss_pred             ccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHH---HhcCCCCCcEEEecCCCcChH
Q 010952          305 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA---ALTSLTGLTHLDLFGARITDS  381 (497)
Q Consensus       305 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~  381 (497)
                      .+....+..+..+++|++|++++|.+.......+..+++|+.|++++|.++.....   .....+.++.+++.++.+.+.
T Consensus       185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~  264 (353)
T 2z80_A          185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE  264 (353)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred             CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence            87776666777788888888888877665555555677888888888776653221   122345566666666666542


Q ss_pred             ----HHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952          382 ----GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  424 (497)
Q Consensus       382 ----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  424 (497)
                          .+..+..+++|+.|++++|.++......+..+++|++|++++|
T Consensus       265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N  311 (353)
T 2z80_A          265 SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN  311 (353)
T ss_dssp             HHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             chhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCC
Confidence                2344455566666666666555443333345555555555555

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.90  E-value=4.7e-25  Score=203.60  Aligned_cols=255  Identities=16%  Similarity=0.178  Sum_probs=135.7

Q ss_pred             EEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCC
Q 010952          178 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE  257 (497)
Q Consensus       178 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  257 (497)
                      ..++..+.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+  ++.+++|++|++++|.
T Consensus        14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~   91 (317)
T 3o53_A           14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY   91 (317)
T ss_dssp             EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred             EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence            33444444444444444555677777777777766666667777777777777777654332  5666777777777766


Q ss_pred             CChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHH
Q 010952          258 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK  337 (497)
Q Consensus       258 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  337 (497)
                      +...     ...++|+.|++++|.+....+   ..+++|++|++++|.+.......+..+++|++|++++|.+....+..
T Consensus        92 l~~l-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  163 (317)
T 3o53_A           92 VQEL-----LVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE  163 (317)
T ss_dssp             EEEE-----EECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred             cccc-----cCCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence            5532     233666666666666554332   12455666666666555544444445555666666555555433333


Q ss_pred             h-cCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCC
Q 010952          338 L-AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL  416 (497)
Q Consensus       338 l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L  416 (497)
                      + ..+++|+.|++++|.++..  .....+++|+.|++++|.++...+. +..+++|+.|++++|.++.. +..+..+++|
T Consensus       164 ~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L  239 (317)
T 3o53_A          164 LAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNL  239 (317)
T ss_dssp             GGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTTC
T ss_pred             HhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccch-hhHhhcCCCC
Confidence            3 2445555555555555443  1122345555555555555443222 44455555555555555433 2233444555


Q ss_pred             CeecccCCCCCC-hhHHHHhhcCCCCcEEEee
Q 010952          417 TLLNLSQNCNLT-DKTLELISGLTGLVSLNVS  447 (497)
Q Consensus       417 ~~L~l~~~~~l~-~~~~~~l~~~~~L~~L~l~  447 (497)
                      +.|++++| .+. +..+..+..+++|+.|++.
T Consensus       240 ~~L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          240 EHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             CEEECTTC-CCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             CEEEccCC-CccCcCHHHHHhccccceEEECC
Confidence            55555555 343 3344444444445544444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=1.3e-22  Score=192.91  Aligned_cols=259  Identities=18%  Similarity=0.198  Sum_probs=175.2

Q ss_pred             HHHHhhCCCCCcEEEcCCCCCChhHhHh----hhcCCCCCEEEccCCCCC---hhHHH-------HhhCCCCcCEEeCCC
Q 010952          214 CLDSLSALGSLFYLNLNRCQLSDDGCEK----FSKIGSLKVLNLGFNEIT---DECLV-------HLKGLTNLESLNLDS  279 (497)
Q Consensus       214 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~---~~~~~-------~l~~~~~L~~L~l~~  279 (497)
                      ++..+..+++|+.|++++|.+....+..    +..+++|+.|++++|.+.   +..+.       .+..+++|+.|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            3455677888999999999887765544    557888999999886433   22222       246788888888888


Q ss_pred             CCCCH----hHHHHHhCCCCCCEeeccCcccchHHHHhhc----CC---------CCCCEEeccCCCCChHHH----HHh
Q 010952          280 CGIGD----EGLVNLTGLCNLKCLELSDTQVGSSGLRHLS----GL---------TNLESINLSFTGISDGSL----RKL  338 (497)
Q Consensus       280 ~~l~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~----~~---------~~L~~L~l~~~~~~~~~~----~~l  338 (497)
                      |.+..    ..+..+..+++|++|++++|.++......+.    .+         ++|++|++++|.++....    ..+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            88776    3455667788888888888887654443333    23         788888888887763322    345


Q ss_pred             cCCCCCcEEEcCCCCCCHhHH----H-HhcCCCCCcEEEecCCCcC----hHHHHHhhccCCCCeeeecCCCCChhhHHh
Q 010952          339 AGLSSLKSLNLDARQITDTGL----A-ALTSLTGLTHLDLFGARIT----DSGAAYLRNFKNLRSLEICGGGLTDAGVKH  409 (497)
Q Consensus       339 ~~~~~L~~L~l~~~~~~~~~~----~-~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~  409 (497)
                      ..+++|+.|++++|.++..+.    . .+..+++|+.|++++|.++    ...+..+..+++|+.|++++|.+++.+...
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  263 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  263 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence            567788888888888875432    2 4556788888888888875    344556677788888888888877764433


Q ss_pred             ----hhh--cCCCCeecccCCCCCCh----hHHHHh-hcCCCCcEEEeeCCccChhHH--Hhh-cCCcccceeecccC
Q 010952          410 ----IKD--LSSLTLLNLSQNCNLTD----KTLELI-SGLTGLVSLNVSNSRITSAGL--RHL-KPLKNLRSLTLESC  473 (497)
Q Consensus       410 ----~~~--l~~L~~L~l~~~~~l~~----~~~~~l-~~~~~L~~L~l~~~~l~~~~~--~~l-~~~~~L~~L~l~~~  473 (497)
                          +..  +++|++|+|++| .++.    .++..+ .++++|+.|++++|++++..+  ..+ ..+++++.+++...
T Consensus       264 l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~~  340 (386)
T 2ca6_A          264 VVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL  340 (386)
T ss_dssp             HHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred             HHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhhc
Confidence                222  677888888887 6776    355555 457788888888887776542  332 33455555555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.89  E-value=6.5e-24  Score=206.19  Aligned_cols=246  Identities=23%  Similarity=0.266  Sum_probs=161.2

Q ss_pred             CcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCC
Q 010952          200 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS  279 (497)
Q Consensus       200 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  279 (497)
                      ...++.++..+.. +|..+  .+++++|++++|.+....+..|+.+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus        56 ~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcCc-cCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            4556666665544 23222  25788888888888777677778888888888888887766556677778888888888


Q ss_pred             CCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCC-CCChHHHHHhcCCCCCcEEEcCCCCCCHhH
Q 010952          280 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTG  358 (497)
Q Consensus       280 ~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  358 (497)
                      |.+....+..+..+++|++|++++|.+.......+..+++|++|+++++ .+.......+.++++|+.|++++|.++.. 
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-  211 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-  211 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence            8777665555667777888888777776655556667777777777764 33333334455667777777777666653 


Q ss_pred             HHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcC
Q 010952          359 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL  438 (497)
Q Consensus       359 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~  438 (497)
                       ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|+|++| .++...+..+..+
T Consensus       212 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l  289 (452)
T 3zyi_A          212 -PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPL  289 (452)
T ss_dssp             -CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTC
T ss_pred             -ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccc
Confidence             23455666666666666666655555666666666666666666655555556666666666666 5555444455556


Q ss_pred             CCCcEEEeeCCcc
Q 010952          439 TGLVSLNVSNSRI  451 (497)
Q Consensus       439 ~~L~~L~l~~~~l  451 (497)
                      ++|+.|++++|++
T Consensus       290 ~~L~~L~L~~Np~  302 (452)
T 3zyi_A          290 RYLVELHLHHNPW  302 (452)
T ss_dssp             TTCCEEECCSSCE
T ss_pred             cCCCEEEccCCCc
Confidence            6666666666654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.89  E-value=1.4e-24  Score=199.81  Aligned_cols=247  Identities=21%  Similarity=0.225  Sum_probs=154.0

Q ss_pred             cEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhH--HHHhhCCCCcCEEeCC
Q 010952          201 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC--LVHLKGLTNLESLNLD  278 (497)
Q Consensus       201 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~  278 (497)
                      +.++.+++.++. +|..  -.++|++|++++|.+.......++.+++|+.|++++|.+....  +..+..+++|+.|+++
T Consensus        10 ~~l~c~~~~l~~-ip~~--~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLTS-VPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCSS-CCSC--CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCccc-CCCC--CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            356666665544 2222  2257888888888777655555677788888888887776321  2344567778888887


Q ss_pred             CCCCCHhHHHHHhCCCCCCEeeccCcccchHHH-HhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCH-
Q 010952          279 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-  356 (497)
Q Consensus       279 ~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-  356 (497)
                      +|.+... +..+..+++|++|++++|.+..... ..+..+++|++|++++|.+....+..+.++++|+.|++++|.++. 
T Consensus        87 ~n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           87 FNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             SCSEEEE-EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCccccC-hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence            7766532 2235567777777777776655432 345666777777777776655444555666677777777666654 


Q ss_pred             hHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhh
Q 010952          357 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS  436 (497)
Q Consensus       357 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~  436 (497)
                      ..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++| .+++..+..+.
T Consensus       166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~  244 (306)
T 2z66_A          166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQ  244 (306)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCC
T ss_pred             cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC-CCcccCHHHHH
Confidence            22344555666666666666666655555566666666666666666655545555666666666666 55555555555


Q ss_pred             cCC-CCcEEEeeCCccC
Q 010952          437 GLT-GLVSLNVSNSRIT  452 (497)
Q Consensus       437 ~~~-~L~~L~l~~~~l~  452 (497)
                      .++ +|+.|++++|+++
T Consensus       245 ~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          245 HFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CCCTTCCEEECTTCCEE
T ss_pred             hhhccCCEEEccCCCee
Confidence            553 6666666666654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.89  E-value=6e-24  Score=205.66  Aligned_cols=246  Identities=23%  Similarity=0.248  Sum_probs=169.2

Q ss_pred             CcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCC
Q 010952          200 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS  279 (497)
Q Consensus       200 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  279 (497)
                      ...++..+..+.. +|..+  .++++.|++++|.+....+..|+.+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus        45 ~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLRE-VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCSS-CCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcCc-CCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            4566666665554 33322  25788888888888777777788888888888888887766666677888888888888


Q ss_pred             CCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCC-CCChHHHHHhcCCCCCcEEEcCCCCCCHhH
Q 010952          280 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTG  358 (497)
Q Consensus       280 ~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  358 (497)
                      |.+.......+..+++|++|++++|.+.......+..+++|++|+++++ .+.......+.++++|+.|++++|.++.. 
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-  200 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-  200 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-
Confidence            8777665556677788888888888777655556677778888888774 34433334566677777777777766653 


Q ss_pred             HHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcC
Q 010952          359 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL  438 (497)
Q Consensus       359 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~  438 (497)
                       ..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|+.|+|++| .++...+..+..+
T Consensus       201 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l  278 (440)
T 3zyj_A          201 -PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPL  278 (440)
T ss_dssp             -CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSC
T ss_pred             -cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccc
Confidence             23556667777777777666665666666677777777777766666666666667777777766 5665555555666


Q ss_pred             CCCcEEEeeCCcc
Q 010952          439 TGLVSLNVSNSRI  451 (497)
Q Consensus       439 ~~L~~L~l~~~~l  451 (497)
                      ++|+.|++++|++
T Consensus       279 ~~L~~L~L~~Np~  291 (440)
T 3zyj_A          279 HHLERIHLHHNPW  291 (440)
T ss_dssp             TTCCEEECCSSCE
T ss_pred             cCCCEEEcCCCCc
Confidence            6666666666664

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.89  E-value=4.3e-24  Score=207.44  Aligned_cols=245  Identities=19%  Similarity=0.197  Sum_probs=207.2

Q ss_pred             CCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccC
Q 010952          176 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF  255 (497)
Q Consensus       176 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  255 (497)
                      ...++..+..++.. |..+  .+++++|++++|.+....+..|.++++|++|++++|.+....+..|..+++|++|++++
T Consensus        56 ~~~v~c~~~~l~~i-P~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLSEV-PQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcCcc-CCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            34555555555532 2222  26899999999999887778899999999999999999888778899999999999999


Q ss_pred             CCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCc-ccchHHHHhhcCCCCCCEEeccCCCCChHH
Q 010952          256 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGISDGS  334 (497)
Q Consensus       256 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  334 (497)
                      |.+....+..+..+++|+.|++++|.+.......+..+++|++|+++++ .+.......+..+++|++|++++|.+... 
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-  211 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-  211 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence            9988766666888999999999999988777777888999999999984 44444445678899999999999988754 


Q ss_pred             HHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcC
Q 010952          335 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS  414 (497)
Q Consensus       335 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~  414 (497)
                       ..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++......+..++
T Consensus       212 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  290 (452)
T 3zyi_A          212 -PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR  290 (452)
T ss_dssp             -CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred             -ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence             3467889999999999999988778889999999999999999988788888999999999999999988777788899


Q ss_pred             CCCeecccCCC
Q 010952          415 SLTLLNLSQNC  425 (497)
Q Consensus       415 ~L~~L~l~~~~  425 (497)
                      +|+.|+|++|+
T Consensus       291 ~L~~L~L~~Np  301 (452)
T 3zyi_A          291 YLVELHLHHNP  301 (452)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEccCCC
Confidence            99999999994

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.89  E-value=4.3e-24  Score=206.65  Aligned_cols=245  Identities=19%  Similarity=0.216  Sum_probs=207.5

Q ss_pred             CCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccC
Q 010952          176 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF  255 (497)
Q Consensus       176 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  255 (497)
                      ...++..+..++.. |..+  .++++.|++++|.+....+..+.++++|++|++++|.+....+..|..+++|+.|++++
T Consensus        45 ~~~v~c~~~~l~~i-P~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLREV-PDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCSSC-CSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcCcC-CCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            34555555555532 2222  26899999999999887778899999999999999999888788899999999999999


Q ss_pred             CCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcc-cchHHHHhhcCCCCCCEEeccCCCCChHH
Q 010952          256 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGS  334 (497)
Q Consensus       256 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  334 (497)
                      |.+.......+..+++|+.|++++|.+.......+..+++|++|++++++ +.......+..+++|++|++++|.+....
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~  201 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP  201 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence            99887666668889999999999999887777778889999999999854 44444456788999999999999887532


Q ss_pred             HHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcC
Q 010952          335 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS  414 (497)
Q Consensus       335 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~  414 (497)
                        .+..+++|+.|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++......+..++
T Consensus       202 --~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  279 (440)
T 3zyj_A          202 --NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH  279 (440)
T ss_dssp             --CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred             --ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence              467889999999999999987778888999999999999999988888888999999999999999988777788899


Q ss_pred             CCCeecccCCC
Q 010952          415 SLTLLNLSQNC  425 (497)
Q Consensus       415 ~L~~L~l~~~~  425 (497)
                      +|+.|+|++|+
T Consensus       280 ~L~~L~L~~Np  290 (440)
T 3zyj_A          280 HLERIHLHHNP  290 (440)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEcCCCC
Confidence            99999999994

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=2.6e-24  Score=195.75  Aligned_cols=205  Identities=21%  Similarity=0.251  Sum_probs=90.0

Q ss_pred             CCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCC-CChhHhHhhhcCCCCCEEE
Q 010952          174 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLN  252 (497)
Q Consensus       174 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~  252 (497)
                      ++|++|+++++.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|. +....+..++.+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            455555555555554444445555555555555555444334444445555555555543 3333333344444444444


Q ss_pred             ccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCCh
Q 010952          253 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD  332 (497)
Q Consensus       253 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  332 (497)
                      +++|.+..                        ..+..+..+++|++|++++|.+.......+..+++|++|++++|.+..
T Consensus       112 l~~n~l~~------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  167 (285)
T 1ozn_A          112 LDRCGLQE------------------------LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS  167 (285)
T ss_dssp             CTTSCCCC------------------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCE------------------------ECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence            44444433                        222233333444444444443333222233334444444444444433


Q ss_pred             HHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCC
Q 010952          333 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL  402 (497)
Q Consensus       333 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l  402 (497)
                      .....+.++++|+.|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence            2222333444444444444444433333344444444444444444443333344444444444444443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=5.4e-22  Score=188.67  Aligned_cols=257  Identities=18%  Similarity=0.174  Sum_probs=179.2

Q ss_pred             HhhhcCCCCcEEEccCCCCChHHHHH----hhCCCCCcEEEcCCCCCC---hhHhH-------hhhcCCCCCEEEccCCC
Q 010952          192 AYLKGLQKLTLLNLEGCPVTAACLDS----LSALGSLFYLNLNRCQLS---DDGCE-------KFSKIGSLKVLNLGFNE  257 (497)
Q Consensus       192 ~~l~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~---~~~~~-------~l~~l~~L~~L~l~~~~  257 (497)
                      ..+..+++|++|++++|.+....+..    +..+++|++|++++|.+.   ...+.       .+..+++|++|++++|.
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            45567788889999988887654444    557888899988886433   22222       23677888999998888


Q ss_pred             CCh----hHHHHhhCCCCcCEEeCCCCCCCHhHHHHHh----CC---------CCCCEeeccCcccchH-HH---HhhcC
Q 010952          258 ITD----ECLVHLKGLTNLESLNLDSCGIGDEGLVNLT----GL---------CNLKCLELSDTQVGSS-GL---RHLSG  316 (497)
Q Consensus       258 ~~~----~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~----~~---------~~L~~L~l~~~~~~~~-~~---~~l~~  316 (497)
                      +..    ..+..+..+++|+.|++++|.+....+..+.    .+         ++|++|++++|.++.. .+   ..+..
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  185 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  185 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence            876    3555677788899999988888655444333    23         7888999988887632 22   35567


Q ss_pred             CCCCCEEeccCCCCChHH----HH-HhcCCCCCcEEEcCCCCCCHh----HHHHhcCCCCCcEEEecCCCcChHH----H
Q 010952          317 LTNLESINLSFTGISDGS----LR-KLAGLSSLKSLNLDARQITDT----GLAALTSLTGLTHLDLFGARITDSG----A  383 (497)
Q Consensus       317 ~~~L~~L~l~~~~~~~~~----~~-~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~  383 (497)
                      +++|++|++++|.++...    .. .+..+++|+.|++++|.++..    .+..+..+++|+.|++++|.+++..    +
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  265 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  265 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence            788999999888887542    22 566788899999988888633    3455667888999999988888763    3


Q ss_pred             HHhhc--cCCCCeeeecCCCCChh----hHHhh-hhcCCCCeecccCCCCCChhHH--HHhh-cCCCCcEEEeeCC
Q 010952          384 AYLRN--FKNLRSLEICGGGLTDA----GVKHI-KDLSSLTLLNLSQNCNLTDKTL--ELIS-GLTGLVSLNVSNS  449 (497)
Q Consensus       384 ~~l~~--~~~L~~L~l~~~~l~~~----~~~~~-~~l~~L~~L~l~~~~~l~~~~~--~~l~-~~~~L~~L~l~~~  449 (497)
                      ..+..  +++|+.|++++|.++..    .+..+ ..+++|++|++++| .+++..+  ..+. .++.++.+++...
T Consensus       266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~~~~~~~~l~~~l~~~~~~~l~~~  340 (386)
T 2ca6_A          266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSEEDDVVDEIREVFSTRGRGELDEL  340 (386)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred             HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC-cCCcchhHHHHHHHHhhhcCcchhhhc
Confidence            44433  78899999998888873    34444 55788999999888 6765542  3332 3445555555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.89  E-value=1.1e-24  Score=201.03  Aligned_cols=259  Identities=17%  Similarity=0.159  Sum_probs=177.1

Q ss_pred             CcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCC
Q 010952          200 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS  279 (497)
Q Consensus       200 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  279 (497)
                      ++..+++.+.+.......+..+++|++|++++|.+....+..++.+++|+.|++++|.+....+  +..+++|+.|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            4445555555555444555566778888888887777666777777888888888777764332  66777888888877


Q ss_pred             CCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHH
Q 010952          280 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL  359 (497)
Q Consensus       280 ~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  359 (497)
                      |.+....     ..++|++|++++|.+.....   ..+++|++|++++|.+....+..+..+++|+.|++++|.++...+
T Consensus        90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           90 NYVQELL-----VGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             SEEEEEE-----ECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             Ccccccc-----CCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence            7654322     34678888887777665432   235678888888887776655566667778888888877776544


Q ss_pred             HHh-cCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcC
Q 010952          360 AAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL  438 (497)
Q Consensus       360 ~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~  438 (497)
                      ..+ ..+++|+.|++++|.++...  ....+++|+.|++++|.+++..+ .+..+++|++|++++| .++. ++..+..+
T Consensus       162 ~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N-~l~~-l~~~~~~l  236 (317)
T 3o53_A          162 AELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNN-KLVL-IEKALRFS  236 (317)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTS-CCCE-ECTTCCCC
T ss_pred             HHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCC-cccc-hhhHhhcC
Confidence            444 35677888888888776541  12347778888888887776643 3666778888888887 6664 45556677


Q ss_pred             CCCcEEEeeCCccC-hhHHHhhcCCcccceeecccC
Q 010952          439 TGLVSLNVSNSRIT-SAGLRHLKPLKNLRSLTLESC  473 (497)
Q Consensus       439 ~~L~~L~l~~~~l~-~~~~~~l~~~~~L~~L~l~~~  473 (497)
                      ++|+.|++++|++. +..+..+..+++|+.++++++
T Consensus       237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            78888888888777 555566677777777777643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=6e-22  Score=184.88  Aligned_cols=223  Identities=22%  Similarity=0.234  Sum_probs=102.4

Q ss_pred             CcEEEccCCCCChHHHHHhhCC--CCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChh-HHHHhhCCCCcCEEe
Q 010952          200 LTLLNLEGCPVTAACLDSLSAL--GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE-CLVHLKGLTNLESLN  276 (497)
Q Consensus       200 L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~  276 (497)
                      ++.++++++.+..   ..+..+  ++++.++++++.+.+..+. +..+++|+.|++++|.+... .+..+..+++|+.|+
T Consensus        49 ~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            5556666555542   223333  4555555555554433222 22345555555555544432 333444455555555


Q ss_pred             CCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChH-HHHHhcCCCCCcEEEcCCC-CC
Q 010952          277 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDAR-QI  354 (497)
Q Consensus       277 l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~-~~  354 (497)
                      +++|.+.+..+..++.+++|++|++++|.                       .+++. .+..+.++++|+.|++++| .+
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~-----------------------~l~~~~l~~~~~~~~~L~~L~l~~~~~l  181 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCS-----------------------GFSEFALQTLLSSCSRLDELNLSWCFDF  181 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCB-----------------------SCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCC-----------------------CCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence            55554444444444444455555554441                       33332 2222344444444444444 44


Q ss_pred             CHhH-HHHhcCCC-CCcEEEecCC--CcC-hHHHHHhhccCCCCeeeecCCC-CChhhHHhhhhcCCCCeecccCCCCCC
Q 010952          355 TDTG-LAALTSLT-GLTHLDLFGA--RIT-DSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLT  428 (497)
Q Consensus       355 ~~~~-~~~~~~~~-~L~~L~l~~~--~~~-~~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~~~~l~  428 (497)
                      ++.+ +..+..++ +|++|++++|  .++ ...+..+..+++|++|++++|. +++..+..+..+++|++|++++|..+.
T Consensus       182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~  261 (336)
T 2ast_B          182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII  261 (336)
T ss_dssp             CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred             ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence            4332 22233444 5555555554  233 2223333445555555555554 444444444445555555555553333


Q ss_pred             hhHHHHhhcCCCCcEEEeeCC
Q 010952          429 DKTLELISGLTGLVSLNVSNS  449 (497)
Q Consensus       429 ~~~~~~l~~~~~L~~L~l~~~  449 (497)
                      +.....+.++++|+.|++++|
T Consensus       262 ~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          262 PETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGGGGGGGCTTCCEEECTTS
T ss_pred             HHHHHHHhcCCCCCEEeccCc
Confidence            333334444555555555555

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=1.3e-23  Score=191.08  Aligned_cols=224  Identities=23%  Similarity=0.252  Sum_probs=165.8

Q ss_pred             cEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCc
Q 010952          225 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT  304 (497)
Q Consensus       225 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~  304 (497)
                      +.++.+++.+.... .  +..++++.|+++++.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~ip-~--~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAVP-V--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSCC-T--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccCC-c--CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            46667666665432 2  23468888888888887665556777888888888888777666666777888888888888


Q ss_pred             c-cchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHH
Q 010952          305 Q-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA  383 (497)
Q Consensus       305 ~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  383 (497)
                      . +....+..+..+++|++|++++|.+....+..+.++++|+.|++++|.++......+..+++|+.|++++|.++...+
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            6 655555667777888888888887776555667777888888888887776555556677888888888887776655


Q ss_pred             HHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccC
Q 010952          384 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  452 (497)
Q Consensus       384 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~  452 (497)
                      ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++| .+++..+..+..+++|+.|++++|++.
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCcc
Confidence            56677788888888888877776677777778888888887 677766667777788888888887765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=1.5e-23  Score=193.99  Aligned_cols=231  Identities=20%  Similarity=0.182  Sum_probs=125.7

Q ss_pred             CCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCE
Q 010952           50 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  129 (497)
Q Consensus        50 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  129 (497)
                      .++++.|+++++.+. ..+..+.++++|++|++++| .+. ..+..+..+++|++|++++|.. . .+|..++++++|++
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n-~l~-~lp~~~~~l~~L~~L~Ls~n~l-~-~lp~~l~~l~~L~~  154 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA-GLM-ELPDTMQQFAGLETLTLARNPL-R-ALPASIASLNRLRE  154 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESS-CCC-CCCSCGGGGTTCSEEEEESCCC-C-CCCGGGGGCTTCCE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCC-Ccc-chhHHHhccCCCCEEECCCCcc-c-cCcHHHhcCcCCCE
Confidence            477888888888776 55666777888888888877 455 4456677788888888888764 3 45667777888888


Q ss_pred             EeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCC
Q 010952          130 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP  209 (497)
Q Consensus       130 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  209 (497)
                      |++++|......+..+..      ..          ....+..+++|++|++++|.++ ..+..+.++++|++|++++|.
T Consensus       155 L~L~~n~~~~~~p~~~~~------~~----------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~  217 (328)
T 4fcg_A          155 LSIRACPELTELPEPLAS------TD----------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP  217 (328)
T ss_dssp             EEEEEETTCCCCCSCSEE------EC-----------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSC
T ss_pred             EECCCCCCccccChhHhh------cc----------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCC
Confidence            888776655544444332      00          0011223444444444444444 223334444444444444444


Q ss_pred             CChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHH
Q 010952          210 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN  289 (497)
Q Consensus       210 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~  289 (497)
                      +.+ .+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..
T Consensus       218 l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~  296 (328)
T 4fcg_A          218 LSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL  296 (328)
T ss_dssp             CCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred             CCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence            443 2223444444555555444444444444444455555555544444333333444555555555554444444444


Q ss_pred             HhCCCCCCEeeccC
Q 010952          290 LTGLCNLKCLELSD  303 (497)
Q Consensus       290 l~~~~~L~~L~l~~  303 (497)
                      +..+++++.+.+..
T Consensus       297 l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          297 IAQLPANCIILVPP  310 (328)
T ss_dssp             GGGSCTTCEEECCG
T ss_pred             HhhccCceEEeCCH
Confidence            45555555555543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.88  E-value=2.1e-23  Score=191.97  Aligned_cols=247  Identities=23%  Similarity=0.249  Sum_probs=157.5

Q ss_pred             eEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChH--HHHHHhCCCCCCEEe
Q 010952           54 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ--GMKAFAGLINLVKLD  131 (497)
Q Consensus        54 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~l~~L~~L~  131 (497)
                      +.++.++.+++ .+|..  -.++|++|++++| .+.......|..+++|++|++++|.. ...  .+..+..+++|++|+
T Consensus        10 ~~l~c~~~~l~-~ip~~--~~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~   84 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTG--IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGL-SFKGCCSQSDFGTTSLKYLD   84 (306)
T ss_dssp             TEEECCSSCCS-SCCSC--CCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCC-CEEEEEEHHHHSCSCCCEEE
T ss_pred             CEEEcCCCCcc-cCCCC--CCCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCcc-CcccCcccccccccccCEEE
Confidence            46677776654 23322  2368888888887 56655455577888888888888863 321  145566788888888


Q ss_pred             ccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCC
Q 010952          132 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT  211 (497)
Q Consensus       132 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  211 (497)
                      +++|. +...+..+..+++|++|+++++..........+..+++|++|+++++.+....+..+.++++|++|++++|.+.
T Consensus        85 Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           85 LSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            88864 44555567778888888888754332222245667777777777777776666666677777777777777665


Q ss_pred             h-HHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHH
Q 010952          212 A-ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL  290 (497)
Q Consensus       212 ~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l  290 (497)
                      + ..+..+..+++|++|++++|.+....+..++.+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence            4 344556666777777777777666555566666667777776666654433345556666666666665554444444


Q ss_pred             hCCC-CCCEeeccCccc
Q 010952          291 TGLC-NLKCLELSDTQV  306 (497)
Q Consensus       291 ~~~~-~L~~L~l~~~~~  306 (497)
                      ..++ +|++|++++|.+
T Consensus       244 ~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          244 QHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             CCCCTTCCEEECTTCCE
T ss_pred             HhhhccCCEEEccCCCe
Confidence            4442 555555555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=2.5e-22  Score=188.91  Aligned_cols=222  Identities=22%  Similarity=0.238  Sum_probs=123.8

Q ss_pred             EEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHh----HhhhcCC-CCCEEEccCCCCChhHHHHhhCC-----CCc
Q 010952          203 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC----EKFSKIG-SLKVLNLGFNEITDECLVHLKGL-----TNL  272 (497)
Q Consensus       203 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~~-----~~L  272 (497)
                      ..++.+.+++..+..+...++|++|++++|.+....+    ..+..++ +|+.|++++|.+....+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            5677777777666665666668888888887766555    5566666 77888887777765444333332     777


Q ss_pred             CEEeCCCCCCCHhHHHH----HhCC-CCCCEeeccCcccchHHHHh----hcC-CCCCCEEeccCCCCChHH----HHHh
Q 010952          273 ESLNLDSCGIGDEGLVN----LTGL-CNLKCLELSDTQVGSSGLRH----LSG-LTNLESINLSFTGISDGS----LRKL  338 (497)
Q Consensus       273 ~~L~l~~~~l~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~~~----l~~-~~~L~~L~l~~~~~~~~~----~~~l  338 (497)
                      +.|++++|.+.+..+..    +..+ ++|++|++++|.++......    +.. .++|++|++++|.+++..    ...+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            77777777665444332    3333 66777777777665543332    222 246666666666655322    2333


Q ss_pred             cCCC-CCcEEEcCCCCCCHhHHH----HhcCC-CCCcEEEecCCCcChH----HHHHhhc-cCCCCeeeecCCCCChhhH
Q 010952          339 AGLS-SLKSLNLDARQITDTGLA----ALTSL-TGLTHLDLFGARITDS----GAAYLRN-FKNLRSLEICGGGLTDAGV  407 (497)
Q Consensus       339 ~~~~-~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~----~~~~l~~-~~~L~~L~l~~~~l~~~~~  407 (497)
                      ...+ +|+.|++++|.+++.+..    .+..+ ++|+.|++++|.+++.    .+..+.. .++|++|++++|.+++.++
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            3443 666666666655544332    22233 3566666666655542    2222333 3355555555555555433


Q ss_pred             Hhh----hhcCCCCeecccCC
Q 010952          408 KHI----KDLSSLTLLNLSQN  424 (497)
Q Consensus       408 ~~~----~~l~~L~~L~l~~~  424 (497)
                      ..+    ..+++|++|++++|
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHH
T ss_pred             HHHHHHHhcCCCccEEEeccC
Confidence            222    23355555555555

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.87  E-value=1.2e-24  Score=200.27  Aligned_cols=254  Identities=20%  Similarity=0.162  Sum_probs=148.6

Q ss_pred             hcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCCh-hHhHhh-------hcCCCCCEEEccCCCCChhHHHHh
Q 010952          195 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKF-------SKIGSLKVLNLGFNEITDECLVHL  266 (497)
Q Consensus       195 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l-------~~l~~L~~L~l~~~~~~~~~~~~l  266 (497)
                      ...++|+.++++++.+  ..|..+...  |+.|+++++.+.. ..+..+       ..+++|++|++++|.+.+..+..+
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            3345667777777766  234433332  5566666655422 111111       145666666666665554333322


Q ss_pred             --hCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCC
Q 010952          267 --KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL  344 (497)
Q Consensus       267 --~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  344 (497)
                        ..+++|+.|++++|.+... +..+..+                   .....++|++|++++|.+....+..+.++++|
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l-------------------~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L  175 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLAEL-------------------QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL  175 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHHHH-------------------HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHHHH-------------------HHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence              4455555555555544433 2222221                   00012555555555555554444455566666


Q ss_pred             cEEEcCCCCCCHh--HHHHh--cCCCCCcEEEecCCCcCh---HHHHHhhccCCCCeeeecCCCCChhhH-HhhhhcCCC
Q 010952          345 KSLNLDARQITDT--GLAAL--TSLTGLTHLDLFGARITD---SGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSL  416 (497)
Q Consensus       345 ~~L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~L  416 (497)
                      +.|++++|.+...  .+..+  ..+++|+.|++++|.++.   .....+..+++|+.|++++|.+.+..+ ..+..+++|
T Consensus       176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  255 (312)
T 1wwl_A          176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL  255 (312)
T ss_dssp             CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred             CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence            6666666665543  12233  567777777777777763   222334567788888888888777542 334456888


Q ss_pred             CeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCHH
Q 010952          417 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN  478 (497)
Q Consensus       417 ~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~  478 (497)
                      ++|++++| .++. +|..+.  ++|+.|++++|++++. +. +..+++|++|++++|+++++
T Consensus       256 ~~L~Ls~N-~l~~-ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          256 NSLNLSFT-GLKQ-VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CEEECTTS-CCSS-CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             CEEECCCC-ccCh-hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            88888888 6763 444443  7899999999988876 33 78889999999999988753

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=1.5e-22  Score=197.57  Aligned_cols=212  Identities=18%  Similarity=0.215  Sum_probs=102.4

Q ss_pred             CCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCC
Q 010952          199 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD  278 (497)
Q Consensus       199 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  278 (497)
                      +|++|++++|.+....+..+..+++|++|++++|.+.+..+  ++.+++|++|++++|.+...     ...++|+.|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcCEEECc
Confidence            56666666666665555556666666666666666554332  55566666666666655431     122555666665


Q ss_pred             CCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhc-CCCCCcEEEcCCCCCCHh
Q 010952          279 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDT  357 (497)
Q Consensus       279 ~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~  357 (497)
                      +|.+....+   ..+++|+.|++++|.+....+..+..+++|++|++++|.++...+..+. .+++|+.|++++|.++..
T Consensus       108 ~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          108 NNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            555543322   1234555555555554444333444445555555555544443333332 344455555555444432


Q ss_pred             HHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952          358 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  424 (497)
Q Consensus       358 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  424 (497)
                        .....+++|+.|++++|.+++.++. +..+++|+.|++++|.+++. +..+..+++|+.|++++|
T Consensus       185 --~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          185 --KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGN  247 (487)
T ss_dssp             --ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTC
T ss_pred             --cccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCC
Confidence              1122344444444444444433222 33444444444444444432 222333344444444444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=2.6e-21  Score=181.97  Aligned_cols=252  Identities=17%  Similarity=0.211  Sum_probs=194.8

Q ss_pred             EEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHH----HHhhCCC-CcCEEeCCCCCCCHhHHHHHhCC-----CC
Q 010952          226 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL----VHLKGLT-NLESLNLDSCGIGDEGLVNLTGL-----CN  295 (497)
Q Consensus       226 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~l~~~~~~~l~~~-----~~  295 (497)
                      ++.++++.+.+..+..+...++|+.|++++|.+....+    ..+..++ +|+.|++++|.+.+..+..+...     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46788888888777777767779999999999887555    6677888 89999999998877655555543     89


Q ss_pred             CCEeeccCcccchHHHH----hhcCC-CCCCEEeccCCCCChHHHHH----hcC-CCCCcEEEcCCCCCCHhHH----HH
Q 010952          296 LKCLELSDTQVGSSGLR----HLSGL-TNLESINLSFTGISDGSLRK----LAG-LSSLKSLNLDARQITDTGL----AA  361 (497)
Q Consensus       296 L~~L~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~~~~~~~~~----l~~-~~~L~~L~l~~~~~~~~~~----~~  361 (497)
                      |++|++++|.++.....    .+..+ ++|++|++++|.+++.....    +.. .++|++|++++|.+++.+.    ..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            99999999998765444    34455 89999999999887655544    334 3699999999999986444    33


Q ss_pred             hcCCC-CCcEEEecCCCcChHHHHH----hhcc-CCCCeeeecCCCCChhhHH----hhhh-cCCCCeecccCCCCCChh
Q 010952          362 LTSLT-GLTHLDLFGARITDSGAAY----LRNF-KNLRSLEICGGGLTDAGVK----HIKD-LSSLTLLNLSQNCNLTDK  430 (497)
Q Consensus       362 ~~~~~-~L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~l~~~~~~----~~~~-l~~L~~L~l~~~~~l~~~  430 (497)
                      +...+ +|++|++++|.+++..+..    +..+ ++|++|++++|.+++.+..    .+.. .++|++|++++| .+++.
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~  240 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGP  240 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcH
Confidence            45565 9999999999988765544    3455 5999999999999885444    3333 469999999999 78775


Q ss_pred             HH----HHhhcCCCCcEEEeeCCc---cChhHH----HhhcCCcccceeecccCCCCHH
Q 010952          431 TL----ELISGLTGLVSLNVSNSR---ITSAGL----RHLKPLKNLRSLTLESCKVTAN  478 (497)
Q Consensus       431 ~~----~~l~~~~~L~~L~l~~~~---l~~~~~----~~l~~~~~L~~L~l~~~~~~~~  478 (497)
                      .+    ..+..+++|+.|++++|.   ++....    ..+..+++|+.|++++|.+.+.
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            44    344678999999999998   333322    3456788999999999999876

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.86  E-value=3.5e-22  Score=184.86  Aligned_cols=231  Identities=17%  Similarity=0.089  Sum_probs=109.4

Q ss_pred             CCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCC
Q 010952           98 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK  177 (497)
Q Consensus        98 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  177 (497)
                      ..+++++|+++++.. . .+|..+.++++|++|++++|. +...+..+..+++|++|++++|...  ..+..+..+++|+
T Consensus        79 ~~~~l~~L~L~~n~l-~-~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~  153 (328)
T 4fcg_A           79 TQPGRVALELRSVPL-P-QFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLR  153 (328)
T ss_dssp             TSTTCCEEEEESSCC-S-SCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCC
T ss_pred             cccceeEEEccCCCc-h-hcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCC
Confidence            356777788877763 3 445556667777777777754 3355556667777777777764432  3445566667777


Q ss_pred             EEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCC
Q 010952          178 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE  257 (497)
Q Consensus       178 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  257 (497)
                      +|++++|.+....+..+..      ..+         ...+..+++|++|++++|.+. ..+..++.+++|+.|++++|.
T Consensus       154 ~L~L~~n~~~~~~p~~~~~------~~~---------~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~  217 (328)
T 4fcg_A          154 ELSIRACPELTELPEPLAS------TDA---------SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP  217 (328)
T ss_dssp             EEEEEEETTCCCCCSCSEE------EC----------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSC
T ss_pred             EEECCCCCCccccChhHhh------ccc---------hhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCC
Confidence            7777665544444333322      000         001122344444444444433 222333444444444444444


Q ss_pred             CChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHH
Q 010952          258 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK  337 (497)
Q Consensus       258 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  337 (497)
                      +... +..+..+++|+.|++++|.+....+..+..+++|++|++++|......+..+..+++|++|++++|.+....+..
T Consensus       218 l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~  296 (328)
T 4fcg_A          218 LSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL  296 (328)
T ss_dssp             CCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred             CCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence            3321 112333444444444444333333333333444444444444333333333344444444444444433333344


Q ss_pred             hcCCCCCcEEEcC
Q 010952          338 LAGLSSLKSLNLD  350 (497)
Q Consensus       338 l~~~~~L~~L~l~  350 (497)
                      +.++++++.+.+.
T Consensus       297 l~~L~~L~~l~l~  309 (328)
T 4fcg_A          297 IAQLPANCIILVP  309 (328)
T ss_dssp             GGGSCTTCEEECC
T ss_pred             HhhccCceEEeCC
Confidence            4444444444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.85  E-value=7.4e-24  Score=195.06  Aligned_cols=206  Identities=20%  Similarity=0.191  Sum_probs=105.0

Q ss_pred             CCCCCcEEEcCCCCCChhHhHhh--hcCCCCCEEEccCCCCChhHHHHhhCC-----CCcCEEeCCCCCCCHhHHHHHhC
Q 010952          220 ALGSLFYLNLNRCQLSDDGCEKF--SKIGSLKVLNLGFNEITDECLVHLKGL-----TNLESLNLDSCGIGDEGLVNLTG  292 (497)
Q Consensus       220 ~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~l~~~~~~~l~~  292 (497)
                      ++++|++|++++|.+.+..+..+  +.+++|+.|++++|.+... +..+..+     ++|+.|++++|.+....+..+..
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            56677777777777665555443  6677777777777766643 2222222     56666666666555444444555


Q ss_pred             CCCCCEeeccCcccchH--HHHhh--cCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCC
Q 010952          293 LCNLKCLELSDTQVGSS--GLRHL--SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL  368 (497)
Q Consensus       293 ~~~L~~L~l~~~~~~~~--~~~~l--~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  368 (497)
                      +++|++|++++|.+...  .+..+  ..+++|++|++++|.+....                     ......+..+++|
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------~~~~~~~~~l~~L  230 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS---------------------GVCSALAAARVQL  230 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH---------------------HHHHHHHHTTCCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH---------------------HHHHHHHhcCCCC
Confidence            55555555555554332  11122  34445555555555444111                     1111222234444


Q ss_pred             cEEEecCCCcChHHH-HHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEee
Q 010952          369 THLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS  447 (497)
Q Consensus       369 ~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~  447 (497)
                      +.|++++|.+.+..+ ..+..+++|+.|++++|.++.. +..+.  ++|++|++++| .+++. +. +..+++|++|+++
T Consensus       231 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~--~~L~~L~Ls~N-~l~~~-p~-~~~l~~L~~L~L~  304 (312)
T 1wwl_A          231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLP--AKLSVLDLSYN-RLDRN-PS-PDELPQVGNLSLK  304 (312)
T ss_dssp             SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC-CSSCC--SEEEEEECCSS-CCCSC-CC-TTTSCEEEEEECT
T ss_pred             CEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh-hhhcc--CCceEEECCCC-CCCCC-hh-HhhCCCCCEEecc
Confidence            444444444443221 1222345555555555555532 22222  56666666666 55554 22 5566666666666


Q ss_pred             CCccCh
Q 010952          448 NSRITS  453 (497)
Q Consensus       448 ~~~l~~  453 (497)
                      +|++++
T Consensus       305 ~N~l~~  310 (312)
T 1wwl_A          305 GNPFLD  310 (312)
T ss_dssp             TCTTTC
T ss_pred             CCCCCC
Confidence            666554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.85  E-value=3.8e-21  Score=191.28  Aligned_cols=266  Identities=20%  Similarity=0.114  Sum_probs=201.8

Q ss_pred             CCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEE
Q 010952          149 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN  228 (497)
Q Consensus       149 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  228 (497)
                      .+++.|+++++. +. ..+..+.  ++|++|++++|.++....    .+++|++|++++|.++. ++.   .+++|++|+
T Consensus        40 ~~l~~L~ls~n~-L~-~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGESG-LT-TLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSSC-CS-CCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred             CCCcEEEecCCC-cC-ccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence            468999999855 33 2334343  799999999998885332    57899999999998875 332   678999999


Q ss_pred             cCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccch
Q 010952          229 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS  308 (497)
Q Consensus       229 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~  308 (497)
                      +++|.+.....    .+++|+.|++++|.+....    ..+++|+.|++++|.+....    ..+++|+.|++++|.+..
T Consensus       108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp----~~l~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTSLP----VLPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             ECSCCCCCCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC
T ss_pred             CcCCcCCCCCC----CCCCcCEEECCCCCCCcCC----CCCCCCCEEECcCCcCCCcC----CccCCCCEEECCCCCCCC
Confidence            99998876432    5688999999999887522    23588999999999776532    245789999999988776


Q ss_pred             HHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhc
Q 010952          309 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN  388 (497)
Q Consensus       309 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  388 (497)
                      ..    ..+++|+.|++++|.+....    ...++|+.|++++|.++...    ..+++|+.|++++|.++...    ..
T Consensus       176 l~----~~~~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp----~~  239 (622)
T 3g06_A          176 LP----MLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP----VL  239 (622)
T ss_dssp             CC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC----CC
T ss_pred             Cc----ccCCCCcEEECCCCCCCCCC----CccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC----CC
Confidence            32    45688999999998876421    23578999999998887532    23578999999999887642    45


Q ss_pred             cCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhc
Q 010952          389 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK  460 (497)
Q Consensus       389 ~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~  460 (497)
                      +++|+.|++++|.++....    .+++|+.|++++| .++. +|..+.++++|+.|++++|++++..+..+.
T Consensus       240 l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N-~L~~-lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          240 PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRN-QLTR-LPESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS-CCCS-CCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             CCcCcEEECCCCCCCcCCc----ccccCcEEeCCCC-CCCc-CCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence            7889999999998886543    4688999999998 7774 467788889999999999998887776654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=9.2e-23  Score=198.98  Aligned_cols=243  Identities=18%  Similarity=0.179  Sum_probs=193.8

Q ss_pred             HHHHhhCC----CCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHH
Q 010952          214 CLDSLSAL----GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN  289 (497)
Q Consensus       214 ~~~~l~~l----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~  289 (497)
                      ++..+..+    ++|+.|++++|.+....+..++.+++|++|++++|.+.+..+  +..+++|+.|++++|.+....   
T Consensus        22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~---   96 (487)
T 3oja_A           22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL---   96 (487)
T ss_dssp             HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE---
T ss_pred             hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC---
Confidence            35555444    489999999999988777889999999999999998875443  788899999999998776432   


Q ss_pred             HhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhc-CCCCC
Q 010952          290 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGL  368 (497)
Q Consensus       290 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L  368 (497)
                        ..++|++|++++|.+.....   ..+++|+.|++++|.++...+..+..+++|+.|++++|.++...+..+. .+++|
T Consensus        97 --~~~~L~~L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L  171 (487)
T 3oja_A           97 --VGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL  171 (487)
T ss_dssp             --ECTTCCEEECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred             --CCCCcCEEECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence              34889999999998876533   3468899999999988877776777889999999999988876666654 68899


Q ss_pred             cEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeC
Q 010952          369 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN  448 (497)
Q Consensus       369 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~  448 (497)
                      +.|++++|.+++..  ....+++|+.|++++|.+++..+. +..+++|+.|++++| .++. +|..+..+++|+.|++++
T Consensus       172 ~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N-~l~~-lp~~l~~l~~L~~L~l~~  246 (487)
T 3oja_A          172 EHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNN-KLVL-IEKALRFSQNLEHFDLRG  246 (487)
T ss_dssp             CEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTS-CCCE-ECTTCCCCTTCCEEECTT
T ss_pred             cEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCC-cCcc-cchhhccCCCCCEEEcCC
Confidence            99999999888752  233588999999999998887544 777899999999998 7775 456677888999999999


Q ss_pred             CccC-hhHHHhhcCCcccceeecc
Q 010952          449 SRIT-SAGLRHLKPLKNLRSLTLE  471 (497)
Q Consensus       449 ~~l~-~~~~~~l~~~~~L~~L~l~  471 (497)
                      |++. +..+..+..++.|+.+++.
T Consensus       247 N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          247 NGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCcCcchHHHHHhCCCCcEEecc
Confidence            9887 5566677788888888775

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.85  E-value=5.6e-21  Score=190.06  Aligned_cols=268  Identities=21%  Similarity=0.117  Sum_probs=212.2

Q ss_pred             CCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEE
Q 010952          125 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN  204 (497)
Q Consensus       125 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  204 (497)
                      .++++|+++++. +...+..+.  ++|++|++++|. +... +.   .+++|++|++++|.++....    .+++|++|+
T Consensus        40 ~~l~~L~ls~n~-L~~lp~~l~--~~L~~L~L~~N~-l~~l-p~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDNN-LTSL-PA---LPPELRTLEVSGNQLTSLPV----LPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSSC-CSCCCSCCC--TTCSEEEECSCC-CSCC-CC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred             CCCcEEEecCCC-cCccChhhC--CCCcEEEecCCC-CCCC-CC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence            369999999864 556665554  799999999965 4322 22   67899999999999885332    679999999


Q ss_pred             ccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCH
Q 010952          205 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD  284 (497)
Q Consensus       205 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~  284 (497)
                      +++|.+... +.   .+++|+.|++++|.+.....    .+++|+.|++++|.+....    ...++|+.|++++|.+..
T Consensus       108 Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          108 IFSNPLTHL-PA---LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             ECSCCCCCC-CC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC
T ss_pred             CcCCcCCCC-CC---CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcC----CccCCCCEEECCCCCCCC
Confidence            999988763 22   67899999999998876322    3589999999999887532    245789999999998876


Q ss_pred             hHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcC
Q 010952          285 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS  364 (497)
Q Consensus       285 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  364 (497)
                      ..    ..+++|+.|++++|.+....    ...++|+.|++++|.+....    ..+++|+.|++++|.++...    ..
T Consensus       176 l~----~~~~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp----~~  239 (622)
T 3g06_A          176 LP----MLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP----VL  239 (622)
T ss_dssp             CC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC----CC
T ss_pred             Cc----ccCCCCcEEECCCCCCCCCC----CccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC----CC
Confidence            43    45789999999999887522    23579999999999887432    23589999999999988743    56


Q ss_pred             CCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcC
Q 010952          365 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL  438 (497)
Q Consensus       365 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~  438 (497)
                      +++|+.|++++|.++....    .+++|+.|++++|.++.+ +..+..+++|+.|+|++| .+++..+..+..+
T Consensus       240 l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N-~l~~~~~~~l~~L  307 (622)
T 3g06_A          240 PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN-PLSERTLQALREI  307 (622)
T ss_dssp             CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSC-CCCHHHHHHHHHH
T ss_pred             CCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCC-CCCCcCHHHHHhc
Confidence            7999999999999886432    578999999999999966 667888999999999999 7998888776643

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.84  E-value=1.4e-21  Score=176.82  Aligned_cols=204  Identities=22%  Similarity=0.244  Sum_probs=102.8

Q ss_pred             CCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEecc
Q 010952          247 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS  326 (497)
Q Consensus       247 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  326 (497)
                      ++++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+.           
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----------   97 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-----------   97 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-----------
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc-----------
Confidence            455566655555543333445555555555555555443333444445555555555544443333344           


Q ss_pred             CCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChH-HHHHhhccCCCCeeeecCCCCChh
Q 010952          327 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGGLTDA  405 (497)
Q Consensus       327 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~  405 (497)
                                   ++++|+.|++++|.+.......+..+++|+.|++++|.+... .+..+..+++|++|++++|.+++.
T Consensus        98 -------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A           98 -------------GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             -------------TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             -------------CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence                         444555555544444433322344455555555555555432 234455555566666655555554


Q ss_pred             hHHhhhhcCCCC----eecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCC
Q 010952          406 GVKHIKDLSSLT----LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT  476 (497)
Q Consensus       406 ~~~~~~~l~~L~----~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~  476 (497)
                      .+..+..+++|+    +|++++| .++...+..+ ...+|+.|++++|.+++.....+..+++|+.|++++|+++
T Consensus       165 ~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          165 YCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CHHHhhhhhhccccceeeecCCC-cccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            444444444444    5556665 4544332222 2235666666666655544444555666666666665554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.82  E-value=3.8e-21  Score=173.14  Aligned_cols=201  Identities=19%  Similarity=0.211  Sum_probs=115.5

Q ss_pred             CCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEecc
Q 010952          247 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS  326 (497)
Q Consensus       247 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  326 (497)
                      ..+.++++++.++.. +..+  .++++.|+++++.+....+..+..+++|++|++++|.+.......+..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~i-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAI-PSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCcc-CCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            456777777666532 2111  2467777777776665554456666677777777666655444445556666666666


Q ss_pred             CCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhh
Q 010952          327 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG  406 (497)
Q Consensus       327 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~  406 (497)
                      +|.+.......+.++++|+.|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++...
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence            66655444444555666666666666655544444555566666666666555544444555566666666666555554


Q ss_pred             HHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCcc
Q 010952          407 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI  451 (497)
Q Consensus       407 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l  451 (497)
                      +..+..+++|++|++++| .++...+..+..+++|+.|++++|++
T Consensus       174 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          174 EGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             hhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence            444555555666666655 45544444455555555555555554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.81  E-value=3.1e-20  Score=167.96  Aligned_cols=203  Identities=23%  Similarity=0.214  Sum_probs=95.8

Q ss_pred             ceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEe
Q 010952           52 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD  131 (497)
Q Consensus        52 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  131 (497)
                      ++++|+++++.+++..+..+.++++|++|++++| .+....+..|..+++|++|++++|. +....+..+.++++|++|+
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEE
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEE
Confidence            4556666655555433334555555555555555 3444334445555555555555554 2333334445555555555


Q ss_pred             ccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCch-hHHhhhcCCCCcEEEccCCCC
Q 010952          132 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPV  210 (497)
Q Consensus       132 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~  210 (497)
                      +++|.........+..+++|++|+++                         +|.+... .+..+.++++|++|++++|.+
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~-------------------------~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l  161 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVA-------------------------HNLIQSFKLPEYFSNLTNLEHLDLSSNKI  161 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECC-------------------------SSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CCCCCccccCchhcccCCCCCEEECc-------------------------CCccceecCchhhccCCCCCEEECCCCCC
Confidence            55543222222234444445555544                         4444432 233444445555555555544


Q ss_pred             ChHHHHHhhCCCCCc----EEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCC
Q 010952          211 TAACLDSLSALGSLF----YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI  282 (497)
Q Consensus       211 ~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l  282 (497)
                      ....+..+..+++|+    .|++++|.+....+..+. ..+|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus       162 ~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             CEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred             CcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence            433222333333333    455555555443332222 23555555555555543333345555666666655544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.81  E-value=2.1e-20  Score=168.26  Aligned_cols=212  Identities=20%  Similarity=0.167  Sum_probs=131.8

Q ss_pred             hHHHHHHhcCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHH
Q 010952           41 KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA  120 (497)
Q Consensus        41 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  120 (497)
                      .|.+..|.....++.++++++.++. +|..+.  +++++|++++| .+....+..|.++++|++|++++|. +....+..
T Consensus         6 ~~~~~~C~c~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~   80 (270)
T 2o6q_A            6 KKDGGVCSCNNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGI   80 (270)
T ss_dssp             GGGTCSBEEETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTT
T ss_pred             CCCCCCCEeCCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhh
Confidence            3555555444578899999988763 443332  57899999887 5666556678888888888888886 34444445


Q ss_pred             HhCCCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCC
Q 010952          121 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL  200 (497)
Q Consensus       121 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  200 (497)
                      +.++++|++|++++|......+..+..+++|++|+++++. +....+..+..+++|++|++++|.+.......+..+++|
T Consensus        81 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  159 (270)
T 2o6q_A           81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL  159 (270)
T ss_dssp             TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence            6777888888887754332223445667777777777633 333444455666666666666666665544455666666


Q ss_pred             cEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCC
Q 010952          201 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI  258 (497)
Q Consensus       201 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  258 (497)
                      ++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+
T Consensus       160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            6666666665554444455556666666666655544444455555555555555543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.80  E-value=2.2e-20  Score=171.83  Aligned_cols=231  Identities=17%  Similarity=0.083  Sum_probs=135.1

Q ss_pred             CCCcEEEcCCCCCChhHhHh---hhcCCCCCEEEccCCCCChhHHHHh--hCCCCcCEEeCCCCCCCHhHHHHHhCCCCC
Q 010952          222 GSLFYLNLNRCQLSDDGCEK---FSKIGSLKVLNLGFNEITDECLVHL--KGLTNLESLNLDSCGIGDEGLVNLTGLCNL  296 (497)
Q Consensus       222 ~~L~~L~l~~~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L  296 (497)
                      ..++.+.+.++.+.......   +..+++|+.|++++|.+....+..+  ..+++|+.|++++|.+....+         
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~---------  134 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRS---------  134 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS---------
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhh---------
Confidence            34666666666554332211   1223456666666555544333333  444555555555554432110         


Q ss_pred             CEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHH----HHhcCCCCCcEEE
Q 010952          297 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLD  372 (497)
Q Consensus       297 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~  372 (497)
                                 ......+..+++|++|++++|.+....+..+.++++|+.|++++|.+.....    ..+..+++|+.|+
T Consensus       135 -----------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~  203 (310)
T 4glp_A          135 -----------WLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLA  203 (310)
T ss_dssp             -----------SHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCB
T ss_pred             -----------hhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEE
Confidence                       0011222345556666666665554444455566666666666666544211    1124567777777


Q ss_pred             ecCCCcChHHH--H-HhhccCCCCeeeecCCCCChhhHHhhhhc---CCCCeecccCCCCCChhHHHHhhcCCCCcEEEe
Q 010952          373 LFGARITDSGA--A-YLRNFKNLRSLEICGGGLTDAGVKHIKDL---SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV  446 (497)
Q Consensus       373 l~~~~~~~~~~--~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~l---~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l  446 (497)
                      +++|.++....  . .+..+++|++|++++|.+.+..+..+..+   ++|++|++++| .++. +|..+  .++|+.|++
T Consensus       204 Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~-lp~~~--~~~L~~L~L  279 (310)
T 4glp_A          204 LRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQ-VPKGL--PAKLRVLDL  279 (310)
T ss_dssp             CCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCS-CCSCC--CSCCSCEEC
T ss_pred             CCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCc-hhhhh--cCCCCEEEC
Confidence            77777764322  2 24667888888888888877655555444   68888888888 6774 34444  378889999


Q ss_pred             eCCccChhHHHhhcCCcccceeecccCCCCHH
Q 010952          447 SNSRITSAGLRHLKPLKNLRSLTLESCKVTAN  478 (497)
Q Consensus       447 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~  478 (497)
                      ++|++++..  .+..+++|+.|++++|+++++
T Consensus       280 s~N~l~~~~--~~~~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          280 SSNRLNRAP--QPDELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             CSCCCCSCC--CTTSCCCCSCEECSSTTTSCC
T ss_pred             CCCcCCCCc--hhhhCCCccEEECcCCCCCCC
Confidence            988888642  256788899999999988754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.80  E-value=2.6e-20  Score=167.80  Aligned_cols=211  Identities=20%  Similarity=0.196  Sum_probs=144.7

Q ss_pred             hhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCC
Q 010952          242 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE  321 (497)
Q Consensus       242 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  321 (497)
                      ...+++|+.|+++++.+...  ..+..+++|+.|++++|.+...  ..+..+++|++|++++|.+.......+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            44667888888888776642  2366778888888888776653  2566777888888888777665555566777788


Q ss_pred             EEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCC
Q 010952          322 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG  401 (497)
Q Consensus       322 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  401 (497)
                      +|++++|.+....+..+.++++|+.|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence            88887777765555556677777777777777776555556667777777777777776655556667777777777777


Q ss_pred             CChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcc
Q 010952          402 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN  464 (497)
Q Consensus       402 l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~  464 (497)
                      +.+..+..+..+++|+.|++++| .+.       +.+++|+.|+++.|.+++.++..++.++.
T Consensus       193 l~~~~~~~~~~l~~L~~L~l~~N-~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          193 LKSVPDGVFDRLTSLQYIWLHDN-PWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSS-CBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             CCccCHHHHhCCcCCCEEEccCC-Ccc-------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence            77665555666777777777777 333       23566777777777766666555544433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.80  E-value=1.9e-20  Score=168.64  Aligned_cols=207  Identities=21%  Similarity=0.203  Sum_probs=140.0

Q ss_pred             hCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCE
Q 010952          219 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC  298 (497)
Q Consensus       219 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~  298 (497)
                      ..+++|+.|+++++.+...  ..++.+++|++|++++|.+...  ..+..+++|+.|++++|.+....+..+..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            4556777777777766542  3466677777777777776643  24667777777777777776555555666777777


Q ss_pred             eeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCc
Q 010952          299 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI  378 (497)
Q Consensus       299 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  378 (497)
                      |++++|.+.......+..+++|++|++++|.+....+..+.++++|+.|++++|.++...+..+..+++|+.|++++|.+
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            77777777665555566777777777777776655555566777777777777777765555566677777777777777


Q ss_pred             ChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhc
Q 010952          379 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG  437 (497)
Q Consensus       379 ~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~  437 (497)
                      .+..+..+..+++|+.|++++|++...       +++|+.++++.| .+++.+|..++.
T Consensus       194 ~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n-~~~g~ip~~~~~  244 (272)
T 3rfs_A          194 KSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWIN-KHSGVVRNSAGS  244 (272)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHH-HTGGGBBCTTSC
T ss_pred             CccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHH-hCCCcccCcccc
Confidence            766555566777777777777766532       456777777766 565555554443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.79  E-value=2.3e-19  Score=164.42  Aligned_cols=196  Identities=28%  Similarity=0.377  Sum_probs=159.7

Q ss_pred             hhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCC
Q 010952          242 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE  321 (497)
Q Consensus       242 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  321 (497)
                      .+.+++|+.|+++++.+....  .+..+++|+.|++++|.+....+  +..+++|++|++++|.+...  ..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence            345788999999999887532  47788999999999998876555  78889999999999987764  3577889999


Q ss_pred             EEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCC
Q 010952          322 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG  401 (497)
Q Consensus       322 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  401 (497)
                      +|++++|.+....  .+..+++|+.|++++|.++....  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.
T Consensus       111 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          111 TLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK  184 (308)
T ss_dssp             EEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence            9999999887643  37888999999999998887543  7788999999999998887544  7788999999999999


Q ss_pred             CChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChh
Q 010952          402 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA  454 (497)
Q Consensus       402 l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~  454 (497)
                      +.+..+  +..+++|++|++++| .+++..  .+..+++|+.|++++|+++..
T Consensus       185 l~~~~~--l~~l~~L~~L~L~~N-~l~~~~--~l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          185 ISDISP--LASLPNLIEVHLKNN-QISDVS--PLANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             CCCCGG--GGGCTTCCEEECTTS-CCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred             cCcChh--hcCCCCCCEEEccCC-ccCccc--cccCCCCCCEEEccCCeeecC
Confidence            887654  677899999999999 777654  378889999999999988763

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.78  E-value=7.6e-19  Score=160.99  Aligned_cols=194  Identities=28%  Similarity=0.399  Sum_probs=160.8

Q ss_pred             hCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCE
Q 010952          219 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC  298 (497)
Q Consensus       219 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~  298 (497)
                      ..+++|+.|+++++.+...  ..+..+++|+.|++++|.+....+  +..+++|+.|++++|.+....  .+..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~  111 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKT  111 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCE
T ss_pred             HHcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCE
Confidence            4567899999999987763  357889999999999998886544  888999999999999887643  5778899999


Q ss_pred             eeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCc
Q 010952          299 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI  378 (497)
Q Consensus       299 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  378 (497)
                      |++++|.+....  .+..+++|++|++++|.+.....  +..+++|+.|++++|.++....  +..+++|+.|++++|.+
T Consensus       112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence            999999887643  37889999999999998876543  7788999999999998887543  78899999999999998


Q ss_pred             ChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCCh
Q 010952          379 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD  429 (497)
Q Consensus       379 ~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~  429 (497)
                      .+..+  +..+++|+.|++++|.+.+..  .+..+++|+.|++++| .++.
T Consensus       186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N-~i~~  231 (308)
T 1h6u_A          186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQ-TITN  231 (308)
T ss_dssp             CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEE-EEEC
T ss_pred             CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCC-eeec
Confidence            87543  788999999999999998875  3778899999999999 5544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.78  E-value=9.2e-20  Score=165.35  Aligned_cols=203  Identities=21%  Similarity=0.166  Sum_probs=135.0

Q ss_pred             hhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCC
Q 010952          242 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE  321 (497)
Q Consensus       242 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  321 (497)
                      ++.+++++.++++++.++... ..+  .++++.|++++|.+....+..+..+++|++|++++|.+.....  ...+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip-~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALP-PDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCC-SCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcCC-CCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence            456678888888887776432 111  2578888888887776666667778888888888877665322  25677778


Q ss_pred             EEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCC
Q 010952          322 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG  401 (497)
Q Consensus       322 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  401 (497)
                      +|++++|.+.. .+..+..+++|+.|++++|+++...+..+..+++|+.|++++|++....+..+..+++|+.|++++|+
T Consensus        81 ~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           81 TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             EEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            88887776653 23344566777777777777766554556667777777777777666555555666777777777777


Q ss_pred             CChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccC
Q 010952          402 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  452 (497)
Q Consensus       402 l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~  452 (497)
                      ++......+..+++|+.|++++| .++. ++..+...++|+.|++++|++.
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N-~l~~-ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQEN-SLYT-IPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCccCHHHhcCcCCCCEEECCCC-cCCc-cChhhcccccCCeEEeCCCCcc
Confidence            76665555566677777777777 5553 3444555666777777766654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.77  E-value=4.6e-19  Score=162.92  Aligned_cols=202  Identities=17%  Similarity=0.098  Sum_probs=116.5

Q ss_pred             CCCcEEEcCCCCCChhHhHhh--hcCCCCCEEEccCCCCChh----HHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCC
Q 010952          222 GSLFYLNLNRCQLSDDGCEKF--SKIGSLKVLNLGFNEITDE----CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN  295 (497)
Q Consensus       222 ~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~  295 (497)
                      ++|++|++++|.+.+..+..+  +.+++|++|++++|.+...    ....+..+++|+.|++++|.+....+..++.+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            445555555555544444433  4455555555555554431    1122334556666666666555444445555666


Q ss_pred             CCEeeccCcccchHH--H--HhhcCCCCCCEEeccCCCCChHHH--H-HhcCCCCCcEEEcCCCCCCHhHHHHhcCC---
Q 010952          296 LKCLELSDTQVGSSG--L--RHLSGLTNLESINLSFTGISDGSL--R-KLAGLSSLKSLNLDARQITDTGLAALTSL---  365 (497)
Q Consensus       296 L~~L~l~~~~~~~~~--~--~~l~~~~~L~~L~l~~~~~~~~~~--~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---  365 (497)
                      |++|++++|.+....  .  ..+..+++|++|++++|.++....  . .+..+++|++|++++|.++...+..+..+   
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            666666666543321  1  112456677777777776653221  1 23566777777777777766533334433   


Q ss_pred             CCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCCh
Q 010952          366 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD  429 (497)
Q Consensus       366 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~  429 (497)
                      ++|+.|++++|.++.. |..+  +++|+.|++++|++++...  +..+++|+.|++++| .+++
T Consensus       251 ~~L~~L~Ls~N~l~~l-p~~~--~~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N-~l~~  308 (310)
T 4glp_A          251 SALNSLNLSFAGLEQV-PKGL--PAKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGN-PFLV  308 (310)
T ss_dssp             TTCCCEECCSSCCCSC-CSCC--CSCCSCEECCSCCCCSCCC--TTSCCCCSCEECSST-TTSC
T ss_pred             CcCCEEECCCCCCCch-hhhh--cCCCCEEECCCCcCCCCch--hhhCCCccEEECcCC-CCCC
Confidence            6788888888877743 3333  3788888888888876522  456788888888888 5543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.76  E-value=2e-19  Score=163.15  Aligned_cols=201  Identities=24%  Similarity=0.231  Sum_probs=169.2

Q ss_pred             hhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCC
Q 010952          218 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK  297 (497)
Q Consensus       218 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~  297 (497)
                      +.++++++.++++++.+..... .+  .+.++.|++++|.+....+..+..+++|+.|++++|.+......  ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~-~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPP-DL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCS-CC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcCCC-CC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            4678899999999998876432 22  36899999999999877777789999999999999988765432  6789999


Q ss_pred             EeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCC
Q 010952          298 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR  377 (497)
Q Consensus       298 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  377 (497)
                      +|++++|.+... +..+..+++|++|++++|.++...+..+.++++|+.|++++|+++......+..+++|+.|++++|+
T Consensus        81 ~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           81 TLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             EEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            999999988743 4456788999999999999887666778899999999999999988766677889999999999999


Q ss_pred             cChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCC
Q 010952          378 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC  425 (497)
Q Consensus       378 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~  425 (497)
                      ++...+..+..+++|+.|++++|.+... +..+...++|+.+++++|+
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCC
T ss_pred             CCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCC
Confidence            9987666778899999999999999966 4555567899999999994

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.75  E-value=4.2e-19  Score=157.84  Aligned_cols=178  Identities=19%  Similarity=0.251  Sum_probs=84.9

Q ss_pred             CcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcC
Q 010952          271 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD  350 (497)
Q Consensus       271 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  350 (497)
                      +.+.++++++.+...+. .  -.++++.|+++++.+.......+..+++|++|++++|.+....+..+.++++|+.|+++
T Consensus        15 ~~~~l~~~~~~l~~~p~-~--~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPS-G--IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSSCCS-C--CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCccccCC-C--CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            34555555554432221 1  12345555555555544444444555555555555555544433444445555555555


Q ss_pred             CCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChh
Q 010952          351 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK  430 (497)
Q Consensus       351 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~  430 (497)
                      +|.++...+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|++|++++| .++..
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~  170 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSV  170 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCcc
Confidence            55554433334444555555555555544443333444455555555555554443334444455555555555 44443


Q ss_pred             HHHHhhcCCCCcEEEeeCCccC
Q 010952          431 TLELISGLTGLVSLNVSNSRIT  452 (497)
Q Consensus       431 ~~~~l~~~~~L~~L~l~~~~l~  452 (497)
                      .+..+..+++|+.|++++|++.
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBC
T ss_pred             CHHHHhCCCCCCEEEeeCCcee
Confidence            3334444445555555554443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.75  E-value=8.8e-20  Score=161.10  Aligned_cols=197  Identities=17%  Similarity=0.177  Sum_probs=115.5

Q ss_pred             CcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcc-cchHHHHhhcCCCCCCEEeccC-CCCChHHHHHhcCCCCCcEEE
Q 010952          271 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLN  348 (497)
Q Consensus       271 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~  348 (497)
                      +++.|+++++.+....+..+..+++|++|++++|. +.......+..+++|++|++++ |.+.......+.++++|+.|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            44444444444443333334444555555555553 4333333445555555555555 555443334455556666666


Q ss_pred             cCCCCCCHhHHHHhcCCCCCc---EEEecCC-CcChHHHHHhhccCCCC-eeeecCCCCChhhHHhhhhcCCCCeecccC
Q 010952          349 LDARQITDTGLAALTSLTGLT---HLDLFGA-RITDSGAAYLRNFKNLR-SLEICGGGLTDAGVKHIKDLSSLTLLNLSQ  423 (497)
Q Consensus       349 l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~  423 (497)
                      +++|.++...  .+..+++|+   .|++++| .+....+..+..+++|+ .|++++|++.......+.. ++|++|++++
T Consensus       112 l~~n~l~~lp--~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKMFP--DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCSCC--CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             CCCCCCcccc--ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence            6665555422  144555665   7777777 66665555566677777 7777777777554444443 6777788877


Q ss_pred             CCCCChhHHHHhhcC-CCCcEEEeeCCccChhHHHhhcCCcccceeecccC
Q 010952          424 NCNLTDKTLELISGL-TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC  473 (497)
Q Consensus       424 ~~~l~~~~~~~l~~~-~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~  473 (497)
                      |+.++...+..+.++ ++|+.|++++|+++.....   .+++|+.|+++++
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            733666555666777 7788888888877654322   5667777777766

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.73  E-value=3.8e-19  Score=157.04  Aligned_cols=196  Identities=15%  Similarity=0.109  Sum_probs=94.2

Q ss_pred             CCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCC-CChhHhHhhhcCCCCCEEEccC-CCCChhHHHHhhCCCCcCEEe
Q 010952          199 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLN  276 (497)
Q Consensus       199 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~  276 (497)
                      ++++|+++++.+....+..+..+++|++|++++|. +....+..|+.+++|++|++++ |.+....+..+..+++|+.|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            56666666666665444455566666666666664 5444444555555666666655 555433333344444444444


Q ss_pred             CCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCC---EEeccCC-CCChHHHHHhcCCCCCc-EEEcCC
Q 010952          277 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE---SINLSFT-GISDGSLRKLAGLSSLK-SLNLDA  351 (497)
Q Consensus       277 l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~  351 (497)
                      +++|.+...+                         . +..+++|+   +|++++| .+.......+.++++|+ .|++++
T Consensus       112 l~~n~l~~lp-------------------------~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~  165 (239)
T 2xwt_C          112 IFNTGLKMFP-------------------------D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN  165 (239)
T ss_dssp             EEEECCCSCC-------------------------C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred             CCCCCCcccc-------------------------c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence            4444333211                         1 22333333   4555444 44433333344445555 555555


Q ss_pred             CCCCHhHHHHhcCCCCCcEEEecCCC-cChHHHHHhhcc-CCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952          352 RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  424 (497)
Q Consensus       352 ~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  424 (497)
                      |.++......+.. ++|+.|++++|+ ++...+..+..+ ++|+.|++++|.++.....   .+++|+.|+++++
T Consensus       166 n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          166 NGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             CCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            5444322222222 455555555553 444333444444 5555555555555443221   2345555555444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.72  E-value=2.9e-18  Score=152.38  Aligned_cols=179  Identities=20%  Similarity=0.245  Sum_probs=120.6

Q ss_pred             CCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEecc
Q 010952          247 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS  326 (497)
Q Consensus       247 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  326 (497)
                      ..+.++++++.+.... ..+  .++++.|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~~~p-~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVP-SGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSSCC-SCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCccccC-CCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            4556677666655322 111  2567777777777666555566677777777777777766555556677777777777


Q ss_pred             CCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhh
Q 010952          327 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG  406 (497)
Q Consensus       327 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~  406 (497)
                      +|.+....+..+..+++|+.|++++|.++......+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            77776555555667777777777777777655555666777777777777777665555667777777777777777666


Q ss_pred             HHhhhhcCCCCeecccCCCCCCh
Q 010952          407 VKHIKDLSSLTLLNLSQNCNLTD  429 (497)
Q Consensus       407 ~~~~~~l~~L~~L~l~~~~~l~~  429 (497)
                      +..+..+++|+.|++++| .+..
T Consensus       172 ~~~~~~l~~L~~L~l~~N-~~~c  193 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGN-QFDC  193 (251)
T ss_dssp             TTTTTTCTTCCEEECCSC-CBCT
T ss_pred             HHHHhCCCCCCEEEeeCC-ceeC
Confidence            556666777777777777 4443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.69  E-value=5.7e-17  Score=147.12  Aligned_cols=173  Identities=25%  Similarity=0.312  Sum_probs=136.5

Q ss_pred             CCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEE
Q 010952          268 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL  347 (497)
Q Consensus       268 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  347 (497)
                      .+++|+.|+++++.+....  .+..+++|++|++++|.+.....  +..+++|++|++++|.+...  ..+..+++|+.|
T Consensus        44 ~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  117 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL  117 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred             hcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence            4578899999988776542  36778899999999988876543  77888999999998887763  347788899999


Q ss_pred             EcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCC
Q 010952          348 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL  427 (497)
Q Consensus       348 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l  427 (497)
                      ++++|.++..  ..+..+++|+.|++++|.++..  ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++| .+
T Consensus       118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N-~i  190 (291)
T 1h6t_A          118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-HI  190 (291)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CC
T ss_pred             ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC-cC
Confidence            9998888774  4567788899999998888775  457788889999999888887754  777888888999888 77


Q ss_pred             ChhHHHHhhcCCCCcEEEeeCCccChhH
Q 010952          428 TDKTLELISGLTGLVSLNVSNSRITSAG  455 (497)
Q Consensus       428 ~~~~~~~l~~~~~L~~L~l~~~~l~~~~  455 (497)
                      ++.  ..+..+++|+.|++++|+++...
T Consensus       191 ~~l--~~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          191 SDL--RALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             CBC--GGGTTCTTCSEEEEEEEEEECCC
T ss_pred             CCC--hhhccCCCCCEEECcCCcccCCc
Confidence            764  34778888888988888877643

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.67  E-value=8.4e-17  Score=145.99  Aligned_cols=173  Identities=28%  Similarity=0.351  Sum_probs=131.6

Q ss_pred             hhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCC
Q 010952          242 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE  321 (497)
Q Consensus       242 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  321 (497)
                      ++.+++|+.|+++++.+...  ..+..+++|+.|++++|.+....+  +..+++|++|++++|.+...  ..+..+++|+
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~  115 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLK  115 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCC
T ss_pred             hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCC
Confidence            34567888888888877653  236678888888888887776544  77788888888888887663  3477788888


Q ss_pred             EEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCC
Q 010952          322 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG  401 (497)
Q Consensus       322 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  401 (497)
                      +|++++|.+...  ..+..+++|+.|++++|.++..  ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.
T Consensus       116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence            888888877653  3567788888888888888764  456778888888888888877644  6778888888888888


Q ss_pred             CChhhHHhhhhcCCCCeecccCCCCCCh
Q 010952          402 LTDAGVKHIKDLSSLTLLNLSQNCNLTD  429 (497)
Q Consensus       402 l~~~~~~~~~~l~~L~~L~l~~~~~l~~  429 (497)
                      +++..  .+..+++|+.|++++| .++.
T Consensus       190 i~~l~--~l~~l~~L~~L~l~~n-~i~~  214 (291)
T 1h6t_A          190 ISDLR--ALAGLKNLDVLELFSQ-ECLN  214 (291)
T ss_dssp             CCBCG--GGTTCTTCSEEEEEEE-EEEC
T ss_pred             CCCCh--hhccCCCCCEEECcCC-cccC
Confidence            88753  3677888888888888 4443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=7.1e-17  Score=137.63  Aligned_cols=152  Identities=21%  Similarity=0.296  Sum_probs=92.8

Q ss_pred             CCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeee
Q 010952          318 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI  397 (497)
Q Consensus       318 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  397 (497)
                      ++|++|+++++.+.+..  .+..+++|+.|++++|.++..  ..+..+++|+.|++++|.+++..+..+..+++|+.|++
T Consensus        44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            45555555555554321  345556666666666655442  24556666777777776666555555666677777777


Q ss_pred             cCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCH
Q 010952          398 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA  477 (497)
Q Consensus       398 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~  477 (497)
                      ++|.+++..+..+..+++|++|++++|..+++..  .+..+++|+.|++++|++++..  .+..+++|+.|++++|++.+
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence            7777766556666667777777777772255432  4667777777777777766632  56667777777777777643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.64  E-value=3.9e-16  Score=133.04  Aligned_cols=152  Identities=22%  Similarity=0.312  Sum_probs=101.0

Q ss_pred             CCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEE
Q 010952          293 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD  372 (497)
Q Consensus       293 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  372 (497)
                      +++|++|+++++.+....  .+..+++|++|++++|.+...  ..+..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus        43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            345666666666555322  355566666666666654432  2456677777777777777665555666777788888


Q ss_pred             ecCCCcChHHHHHhhccCCCCeeeecCCC-CChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCcc
Q 010952          373 LFGARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI  451 (497)
Q Consensus       373 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l  451 (497)
                      +++|.+++..+..+..+++|++|++++|. ++...  .+..+++|++|++++| .+++..  .+..+++|+.|++++|++
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n-~i~~~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFD-GVHDYR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTB-CCCCCT--TGGGCSSCCEEEECBC--
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCC-CCcChH--HhccCCCCCEEEeeCccc
Confidence            87777777666677777888888888876 66552  5667788888888888 666632  577788888888888876


Q ss_pred             Ch
Q 010952          452 TS  453 (497)
Q Consensus       452 ~~  453 (497)
                      .+
T Consensus       194 ~~  195 (197)
T 4ezg_A          194 GG  195 (197)
T ss_dssp             --
T ss_pred             CC
Confidence            54

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.63  E-value=4.2e-16  Score=154.92  Aligned_cols=187  Identities=25%  Similarity=0.307  Sum_probs=142.8

Q ss_pred             hCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcE
Q 010952          267 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS  346 (497)
Q Consensus       267 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  346 (497)
                      ..+++|+.|+++++.+....  .+..+++|+.|++++|.+....+  +..+++|+.|++++|.+...  ..+..+++|+.
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~  113 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS  113 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred             hcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence            34578888899888776543  46778899999999988776543  77888999999999887653  35778888999


Q ss_pred             EEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCC
Q 010952          347 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN  426 (497)
Q Consensus       347 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~  426 (497)
                      |++++|.+...  ..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+..+  +..+++|+.|+|++| .
T Consensus       114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~  186 (605)
T 1m9s_A          114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-H  186 (605)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-C
T ss_pred             EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC-C
Confidence            99998888763  4577788899999999888775  457788889999999888887755  777888999999888 7


Q ss_pred             CChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCccccee
Q 010952          427 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL  468 (497)
Q Consensus       427 l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L  468 (497)
                      +++.  ..+..+++|+.|++++|++.......+..+..+..+
T Consensus       187 i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~l  226 (605)
T 1m9s_A          187 ISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV  226 (605)
T ss_dssp             CCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSSCEEECCC
T ss_pred             CCCC--hHHccCCCCCEEEccCCcCcCCcccccccEEecccc
Confidence            7764  457788889999998888776544443433333333

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.63  E-value=3.2e-16  Score=155.78  Aligned_cols=173  Identities=28%  Similarity=0.359  Sum_probs=142.5

Q ss_pred             hhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCC
Q 010952          242 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE  321 (497)
Q Consensus       242 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  321 (497)
                      +..+++|+.|+++++.+....  .+..+++|+.|++++|.+....+  +..+++|+.|++++|.+...  ..+..+++|+
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~  112 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLK  112 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCC
T ss_pred             hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCC
Confidence            456788999999988877532  47788999999999998876554  77899999999999988763  3677889999


Q ss_pred             EEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCC
Q 010952          322 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG  401 (497)
Q Consensus       322 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  401 (497)
                      .|++++|.+...  ..+..+++|+.|++++|.++..  ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.
T Consensus       113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence            999999988763  4577889999999999988875  567789999999999999887655  7889999999999999


Q ss_pred             CChhhHHhhhhcCCCCeecccCCCCCCh
Q 010952          402 LTDAGVKHIKDLSSLTLLNLSQNCNLTD  429 (497)
Q Consensus       402 l~~~~~~~~~~l~~L~~L~l~~~~~l~~  429 (497)
                      +.+.  ..+..+++|+.|+|++| .+..
T Consensus       187 i~~l--~~l~~l~~L~~L~L~~N-~l~~  211 (605)
T 1m9s_A          187 ISDL--RALAGLKNLDVLELFSQ-ECLN  211 (605)
T ss_dssp             CCBC--GGGTTCTTCSEEECCSE-EEEC
T ss_pred             CCCC--hHHccCCCCCEEEccCC-cCcC
Confidence            8876  35778899999999998 5544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.61  E-value=5.6e-17  Score=139.74  Aligned_cols=161  Identities=18%  Similarity=0.171  Sum_probs=85.4

Q ss_pred             CCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEec
Q 010952          295 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF  374 (497)
Q Consensus       295 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  374 (497)
                      ++++|+++++.+.......+..+++|++|++++|.+.......+..+++|++|++++|.++......+..+++|+.|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            44444444444443333334444555555555554443333334455555555555555554433344555666666666


Q ss_pred             CCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChh
Q 010952          375 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA  454 (497)
Q Consensus       375 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~  454 (497)
                      +|.++...+..+..+++|++|++++|.+++.....+..+++|++|++++| .+.       ..+++|+.|+++.|.+++.
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~-------~~~~~l~~L~~~~n~~~g~  180 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN-PWD-------CTCPGIRYLSEWINKHSGV  180 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC-CBC-------CCTTTTHHHHHHHHHCTTT
T ss_pred             CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC-Cee-------cCCCCHHHHHHHHHhCCce
Confidence            66655544444555666666666666666554444555666666666666 222       2345666666666666655


Q ss_pred             HHHhhcCCc
Q 010952          455 GLRHLKPLK  463 (497)
Q Consensus       455 ~~~~l~~~~  463 (497)
                      ++..++.++
T Consensus       181 ip~~~~~l~  189 (208)
T 2o6s_A          181 VRNSAGSVA  189 (208)
T ss_dssp             BBCTTSSBC
T ss_pred             eeccCcccc
Confidence            555544443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.60  E-value=2.5e-16  Score=135.70  Aligned_cols=173  Identities=17%  Similarity=0.129  Sum_probs=135.2

Q ss_pred             CEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCC
Q 010952          297 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA  376 (497)
Q Consensus       297 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  376 (497)
                      +.++..++.+....   ....++|++|++++|.+.......+.++++|+.|++++|.++......+..+++|+.|++++|
T Consensus        10 ~~v~c~~~~l~~~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTSVP---TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSSCC---SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccCCC---CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            45555555444322   123468999999999888666666788899999999999888765566778899999999999


Q ss_pred             CcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHH
Q 010952          377 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL  456 (497)
Q Consensus       377 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~  456 (497)
                      .++...+..+..+++|+.|++++|.+....+..+..+++|++|++++| .+++..+..+..+++|+.|++++|++..   
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~---  162 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDC---  162 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCeec---
Confidence            988766666788899999999999998876666788899999999999 7877666667888999999999997653   


Q ss_pred             HhhcCCcccceeecccCCCCHHHH
Q 010952          457 RHLKPLKNLRSLTLESCKVTANDI  480 (497)
Q Consensus       457 ~~l~~~~~L~~L~l~~~~~~~~~~  480 (497)
                          .+++|+.|+++.|.++....
T Consensus       163 ----~~~~l~~L~~~~n~~~g~ip  182 (208)
T 2o6s_A          163 ----TCPGIRYLSEWINKHSGVVR  182 (208)
T ss_dssp             ----CTTTTHHHHHHHHHCTTTBB
T ss_pred             ----CCCCHHHHHHHHHhCCceee
Confidence                46788888888887765433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.59  E-value=3.5e-16  Score=146.74  Aligned_cols=155  Identities=22%  Similarity=0.280  Sum_probs=69.9

Q ss_pred             CCEEeccCCCCChHHHHHhc-CCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeec
Q 010952          320 LESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC  398 (497)
Q Consensus       320 L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  398 (497)
                      ++.|++++|.++......+. ++++|+.|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  120 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY  120 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence            44444444444333323333 44444444444444444333334444444444444444444333334444555555555


Q ss_pred             CCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHh---hcCCCCcEEEeeCCccChhHHHhhcCCcc--cceeecccC
Q 010952          399 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI---SGLTGLVSLNVSNSRITSAGLRHLKPLKN--LRSLTLESC  473 (497)
Q Consensus       399 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l---~~~~~L~~L~l~~~~l~~~~~~~l~~~~~--L~~L~l~~~  473 (497)
                      +|.+....+..+..+++|+.|+|++| .++......+   ..+++|+.|++++|.++......+..++.  ++.|++++|
T Consensus       121 ~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          121 NNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred             CCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence            55544444444444455555555555 4443322222   33455555555555555444444444444  255555555


Q ss_pred             CC
Q 010952          474 KV  475 (497)
Q Consensus       474 ~~  475 (497)
                      ++
T Consensus       200 ~~  201 (361)
T 2xot_A          200 PL  201 (361)
T ss_dssp             CE
T ss_pred             Cc
Confidence            44

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.59  E-value=3.1e-16  Score=135.95  Aligned_cols=133  Identities=21%  Similarity=0.310  Sum_probs=74.9

Q ss_pred             CCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeee
Q 010952          318 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI  397 (497)
Q Consensus       318 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  397 (497)
                      ++++.|++++|.+.......+..+++|+.|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|+.|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            45666666666655544444555566666666666655544455555566666666666555544444455555666666


Q ss_pred             cCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCcc
Q 010952          398 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI  451 (497)
Q Consensus       398 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l  451 (497)
                      ++|.+....+..+..+++|+.|+|++| .++...+..+..+++|+.|++++|++
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            665555554555555555555555555 45544444455555555555555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.59  E-value=1.1e-14  Score=136.13  Aligned_cols=185  Identities=22%  Similarity=0.283  Sum_probs=130.3

Q ss_pred             CCCCCEeeccCcccchHHHHhhc-----CCCCCCEEeccCCCCChHHHHHhc-CCCCCcEEEcCCCCCCHhHHHHhc---
Q 010952          293 LCNLKCLELSDTQVGSSGLRHLS-----GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT---  363 (497)
Q Consensus       293 ~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~---  363 (497)
                      .++|+.|++++|.++......+.     ..++|++|++++|.+++.....+. .+++|+.|++++|.+++.+...+.   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            46788999999888765444432     236899999999988876554443 456888999999988877665542   


Q ss_pred             --CCCCCcEEEecCCCcChHHHHH----hhccCCCCeeeecCCCCChhhHH----hhhhcCCCCeecccCCCCCChhHHH
Q 010952          364 --SLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDAGVK----HIKDLSSLTLLNLSQNCNLTDKTLE  433 (497)
Q Consensus       364 --~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~l~~~~~~----~~~~l~~L~~L~l~~~~~l~~~~~~  433 (497)
                        ..++|++|++++|.+++.....    +..+++|++|++++|.+++.+..    .+...++|++|+|++| .+++....
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~  229 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAAL  229 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHH
Confidence              4678999999999887654433    46788899999999888876643    3455678889999888 78875443


Q ss_pred             ----HhhcCCCCcEEEeeCCccChhHHHhhcCC---c--ccceee--cccCCCCHH
Q 010952          434 ----LISGLTGLVSLNVSNSRITSAGLRHLKPL---K--NLRSLT--LESCKVTAN  478 (497)
Q Consensus       434 ----~l~~~~~L~~L~l~~~~l~~~~~~~l~~~---~--~L~~L~--l~~~~~~~~  478 (497)
                          .+..+++|++|++++|++++.....+...   .  .|+.+.  +..+.+++.
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~  285 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY  285 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred             HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence                44467888999999888887776665332   2  277777  777777665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.58  E-value=6.3e-16  Score=134.01  Aligned_cols=152  Identities=19%  Similarity=0.267  Sum_probs=89.2

Q ss_pred             CEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHH-HHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecC
Q 010952          297 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG  375 (497)
Q Consensus       297 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  375 (497)
                      +.++++++.++... ..  -.+.+++|++++|.+....+ ..+.++++|+.|++++|.++......+..+++|+.|++++
T Consensus        14 ~~l~~s~n~l~~iP-~~--~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNKIP-EH--IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSSCC-SC--CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcccCc-cC--CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            46666666654421 11  12345667777666654422 2345566666666666666655444555666666666666


Q ss_pred             CCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccC
Q 010952          376 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  452 (497)
Q Consensus       376 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~  452 (497)
                      |.++...+..+..+++|+.|++++|.+....+..+..+++|++|++++| .++...+..+..+++|+.|++++|++.
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            6666555555556666666666666666655555555666666666666 555555555556666666666666554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.58  E-value=3.1e-16  Score=145.22  Aligned_cols=285  Identities=13%  Similarity=0.134  Sum_probs=122.2

Q ss_pred             CCCCCEEEeeccccCchhHHhhhc-CCCCcEEEccCCCCC--hHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhc-----
Q 010952          173 LTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCPVT--AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-----  244 (497)
Q Consensus       173 l~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~-----  244 (497)
                      +++++.|.+.+. +.......+.. +++|+.|++++|++.  ....   +..+.++.+.+..+.+   ....|..     
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~I---~~~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANFV---PAYAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcc---cccccccccccccccc---CHHHhccccccc
Confidence            446777777653 33344445554 677777777777664  1110   1111223333333322   1233444     


Q ss_pred             ---CCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCccc----chHHHHhhcCC
Q 010952          245 ---IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV----GSSGLRHLSGL  317 (497)
Q Consensus       245 ---l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~----~~~~~~~l~~~  317 (497)
                         +++|+.+++.. .+.......|..+++|+.+.+..+.+.......|..+.++..+.......    .......+..+
T Consensus        97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~  175 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG  175 (329)
T ss_dssp             EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred             ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence               66666666655 44444444556666666666666555444444444444444444332110    00001112223


Q ss_pred             CCCC-EEeccCCCC-ChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhc-CCCCCcEEEecCCCcChHHHHHhhccCCCCe
Q 010952          318 TNLE-SINLSFTGI-SDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRS  394 (497)
Q Consensus       318 ~~L~-~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  394 (497)
                      ..|+ .+.+..... .......-....+++.+.+.+. +.......+. .+++|+.+++.+|.++.....+|..|++|+.
T Consensus       176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~  254 (329)
T 3sb4_A          176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK  254 (329)
T ss_dssp             CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred             cccceeEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence            3333 233322111 0101111112233444444332 1111111111 2445555555554444444444444555555


Q ss_pred             eeecCCCCChhhHHhhhhcCCCC-eecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceee
Q 010952          395 LEICGGGLTDAGVKHIKDLSSLT-LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT  469 (497)
Q Consensus       395 L~l~~~~l~~~~~~~~~~l~~L~-~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~  469 (497)
                      +++.+| +..++...|..+++|+ .+++.+  .++.....++.+|++|+.++++++.++.....+|..+++|+.++
T Consensus       255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            555444 4444444444445554 455444  23333344444455555555544444444444444444454443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=3.1e-16  Score=145.23  Aligned_cols=289  Identities=16%  Similarity=0.087  Sum_probs=198.7

Q ss_pred             CCCCcEEEccCCCCChHHHHHhhC-CCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhC-------
Q 010952          197 LQKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG-------  268 (497)
Q Consensus       197 l~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~-------  268 (497)
                      +.+++.|.+++.- .......+.. +++|+.|++++|.+...... -+.++.+..+.+..+.+.   ...|..       
T Consensus        24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~-~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~   98 (329)
T 3sb4_A           24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGK-AGTYPNGKFYIYMANFVP---AYAFSNVVNGVTK   98 (329)
T ss_dssp             HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEES-SSSSGGGCCEEECTTEEC---TTTTEEEETTEEE
T ss_pred             hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCc-cccccccccccccccccC---HHHhccccccccc
Confidence            3467888888752 2223344555 78899999998887611110 112222444555555443   234667       


Q ss_pred             -CCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCC----CChHHHHHhcCCCC
Q 010952          269 -LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG----ISDGSLRKLAGLSS  343 (497)
Q Consensus       269 -~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~----~~~~~~~~l~~~~~  343 (497)
                       +++|+.+.+.. .+......+|..+++|+.+++..+.+.......+..+.++..+......    .......++.++..
T Consensus        99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A           99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence             89999999988 7777777788889999999999887766656667776666666654421    11111122345556


Q ss_pred             Cc-EEEcCCCCC-CHhHHHHhcCCCCCcEEEecCCCcChHHHHHh-hccCCCCeeeecCCCCChhhHHhhhhcCCCCeec
Q 010952          344 LK-SLNLDARQI-TDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN  420 (497)
Q Consensus       344 L~-~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  420 (497)
                      |+ .+.+..... ............+++.+.+.+.-. ......+ ..+++|+.+++.+|.++.+....|..|++|++++
T Consensus       178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~  256 (329)
T 3sb4_A          178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLD-NADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK  256 (329)
T ss_dssp             CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCC-HHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred             cceeEEecCCCcHHHHHhhcccCccccceEEEeeeec-HHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence            66 444443221 111111111356777787776633 3333333 4599999999999999999888999999999999


Q ss_pred             ccCCCCCChhHHHHhhcCCCCc-EEEeeCCccChhHHHhhcCCcccceeecccCCCCHHHHHHHhhcCCCCCccCCCC
Q 010952          421 LSQNCNLTDKTLELISGLTGLV-SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE  497 (497)
Q Consensus       421 l~~~~~l~~~~~~~l~~~~~L~-~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p~L~~l~~~  497 (497)
                      +.+|  ++.....++.++++|+ .+++.+ .++.....+|..|++|+.+++.++.++..+-..+.  .|++|+.++.+
T Consensus       257 l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~--~~~~L~~ly~k  329 (329)
T 3sb4_A          257 LPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG--NGVPSKLIYKK  329 (329)
T ss_dssp             CCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC--TTCCCCEEECC
T ss_pred             CCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhc--CCcchhhhccC
Confidence            9997  7777778899999999 999998 77777778999999999999999999988887776  89999988753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.56  E-value=1.2e-15  Score=133.20  Aligned_cols=153  Identities=24%  Similarity=0.230  Sum_probs=88.1

Q ss_pred             CCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEec
Q 010952          295 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF  374 (497)
Q Consensus       295 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  374 (497)
                      ..+.++.+++.+.... .  ...++|++|++++|.+....+..+.++++|+.|++++|.+.......+..+++|+.|+++
T Consensus        20 s~~~v~c~~~~l~~ip-~--~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVP-A--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             ETTEEECTTSCCSSCC-S--CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             eCCEeEccCCCcCccC-C--CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            3456666665544332 1  123567777777776665545555666666666666666655444445556666666666


Q ss_pred             CCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccC
Q 010952          375 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  452 (497)
Q Consensus       375 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~  452 (497)
                      +|.++...+..+..+++|+.|++++|.+... +..+..+++|++|++++| .++...+..+..+++|+.|++++|++.
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            6666655444455566666666666666543 334455566666666666 555444444555566666666666554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.56  E-value=3.4e-14  Score=132.87  Aligned_cols=185  Identities=23%  Similarity=0.359  Sum_probs=137.2

Q ss_pred             CCCcCEEeCCCCCCCHhHHHHHhC-----CCCCCEeeccCcccchHHHHhhc-CCCCCCEEeccCCCCChHHHHHhc---
Q 010952          269 LTNLESLNLDSCGIGDEGLVNLTG-----LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA---  339 (497)
Q Consensus       269 ~~~L~~L~l~~~~l~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~---  339 (497)
                      .+.|+.|++++|.++......+..     .++|++|++++|.++......+. .+++|++|++++|.+++.....+.   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            367899999999988766655543     26899999999988776544443 457899999999999876665542   


Q ss_pred             --CCCCCcEEEcCCCCCCHhHHHHh----cCCCCCcEEEecCCCcChHH----HHHhhccCCCCeeeecCCCCChhhHHh
Q 010952          340 --GLSSLKSLNLDARQITDTGLAAL----TSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKH  409 (497)
Q Consensus       340 --~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~l~~~~~~~  409 (497)
                        ..++|+.|++++|.+++.+...+    ..+++|++|++++|.+++..    +..+..+++|++|++++|.+++.+...
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence              46889999999999887655443    57889999999999988765    344567889999999999998876554


Q ss_pred             h----hhcCCCCeecccCCCCCChhHHHHhhcCCC-----CcEEE--eeCCccChh
Q 010952          410 I----KDLSSLTLLNLSQNCNLTDKTLELISGLTG-----LVSLN--VSNSRITSA  454 (497)
Q Consensus       410 ~----~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~-----L~~L~--l~~~~l~~~  454 (497)
                      +    ...++|++|+|++| .+++.....+.....     |+.+.  +..+.+.+.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~  285 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY  285 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred             HHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence            4    34689999999999 788887777764422     66666  666666554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.56  E-value=1.6e-15  Score=142.31  Aligned_cols=173  Identities=18%  Similarity=0.178  Sum_probs=99.2

Q ss_pred             CEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHh-CCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccC
Q 010952          249 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF  327 (497)
Q Consensus       249 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  327 (497)
                      ++++++++.+... |..+  .+.++.|++++|.+.......+. .+++|++|++++|.+.......+..+++|++|++++
T Consensus        21 ~~l~c~~~~l~~i-P~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNV-PQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSC-CSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCcc-CccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            4566666655532 1111  23466777777766655544454 566677777766666655445556666666666666


Q ss_pred             CCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHh---hccCCCCeeeecCCCCCh
Q 010952          328 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL---RNFKNLRSLEICGGGLTD  404 (497)
Q Consensus       328 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~l~~  404 (497)
                      |.+.......+.++++|+.|++++|.++...+..+..+++|+.|++++|.++...+..+   ..+++|+.|++++|.+..
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            66655444455566666666666666665544555566666666666666555433333   345666666666666665


Q ss_pred             hhHHhhhhcCC--CCeecccCC
Q 010952          405 AGVKHIKDLSS--LTLLNLSQN  424 (497)
Q Consensus       405 ~~~~~~~~l~~--L~~L~l~~~  424 (497)
                      .....+..++.  ++.|++++|
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSS
T ss_pred             cCHHHhhhccHhhcceEEecCC
Confidence            55445555544  255666665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.56  E-value=1.9e-15  Score=141.21  Aligned_cols=239  Identities=18%  Similarity=0.119  Sum_probs=147.5

Q ss_pred             eEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEecc
Q 010952           54 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE  133 (497)
Q Consensus        54 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  133 (497)
                      ++++-++++++ .+|..+  .+++++|++++| .+......+|.++++|++|++++|.......+.+|.++++++++...
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            46677777765 344433  357888888887 67766566788888888888888875443444567778887766555


Q ss_pred             Cccccccc-cccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeec-cccCchhHHhhhcC-CCCcEEEccCCCC
Q 010952          134 RCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGL-QKLTLLNLEGCPV  210 (497)
Q Consensus       134 ~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l-~~L~~L~l~~~~~  210 (497)
                      ++..+... +..+..+++|++|++++|. +.......+....++..+++.+ +.+.......+..+ ..++.|++++|.+
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            44444444 4567788888888888754 3333333444555666777754 44554444445554 3577788888877


Q ss_pred             ChHHHHHhhCCCCCcEEEcCC-CCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCC-CCCHhHHH
Q 010952          211 TAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLV  288 (497)
Q Consensus       211 ~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~~~  288 (497)
                      ... +.......+|+.+.+.+ +.+.......|+.+++|++|++++|.++.....   .+.+|+.|.+.++ .+... + 
T Consensus       167 ~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l~~~~l~~l-P-  240 (350)
T 4ay9_X          167 QEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRARSTYNLKKL-P-  240 (350)
T ss_dssp             CEE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEECTTCTTCCCC-C-
T ss_pred             cCC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh---hhccchHhhhccCCCcCcC-C-
Confidence            653 33333445777787764 445554445677778888888888877643322   2455666665444 22221 1 


Q ss_pred             HHhCCCCCCEeeccC
Q 010952          289 NLTGLCNLKCLELSD  303 (497)
Q Consensus       289 ~l~~~~~L~~L~l~~  303 (497)
                      .+..+++|+.+++..
T Consensus       241 ~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          241 TLEKLVALMEASLTY  255 (350)
T ss_dssp             CTTTCCSCCEEECSC
T ss_pred             CchhCcChhhCcCCC
Confidence            245566677776654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.56  E-value=1.2e-15  Score=132.30  Aligned_cols=131  Identities=23%  Similarity=0.254  Sum_probs=84.3

Q ss_pred             CCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEe
Q 010952          294 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL  373 (497)
Q Consensus       294 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  373 (497)
                      ++++.|++++|.+.......+..+++|++|++++|.+....+..+.++++|+.|++++|.++......+..+++|+.|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            45666666666666554445566666677777666666555555666666777777666666554444556666777777


Q ss_pred             cCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952          374 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  424 (497)
Q Consensus       374 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  424 (497)
                      ++|.+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence            766666655555666666777777766666665555666666666766666

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.55  E-value=1.1e-15  Score=136.44  Aligned_cols=169  Identities=23%  Similarity=0.292  Sum_probs=130.9

Q ss_pred             CCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEc
Q 010952          270 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL  349 (497)
Q Consensus       270 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  349 (497)
                      .++..+.+..+.+.+..  .+..+++|++|++++|.+....  .+..+++|++|++++|.+.+..+  +.++++|+.|++
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            34555666666665433  3566788999999998877543  57778999999999998876554  788899999999


Q ss_pred             CCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCCh
Q 010952          350 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD  429 (497)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~  429 (497)
                      ++|.++...  .+.. ++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..  .+..+++|++|++++| .+++
T Consensus        93 ~~N~l~~l~--~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N-~i~~  164 (263)
T 1xeu_A           93 NRNRLKNLN--GIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGN-EITN  164 (263)
T ss_dssp             CSSCCSCCT--TCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTS-CCCB
T ss_pred             CCCccCCcC--cccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCC-cCcc
Confidence            999887642  2334 8899999999988874  34778899999999999888763  5777889999999998 7777


Q ss_pred             hHHHHhhcCCCCcEEEeeCCccChh
Q 010952          430 KTLELISGLTGLVSLNVSNSRITSA  454 (497)
Q Consensus       430 ~~~~~l~~~~~L~~L~l~~~~l~~~  454 (497)
                      .  ..+..+++|+.|++++|+++..
T Consensus       165 ~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          165 T--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             h--HHhccCCCCCEEeCCCCcccCC
Confidence            5  6677888999999999887764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.54  E-value=2.3e-15  Score=130.44  Aligned_cols=149  Identities=20%  Similarity=0.211  Sum_probs=93.8

Q ss_pred             CEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHH-HHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCC
Q 010952          273 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA  351 (497)
Q Consensus       273 ~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  351 (497)
                      +.++++++.++..+. .  -.+.+++|++++|.+.... ...+..+++|++|++++|.+....+..+.++++|+.|++++
T Consensus        14 ~~l~~s~n~l~~iP~-~--~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNKIPE-H--IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSSCCS-C--CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcccCcc-C--CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            356666665543221 1  1234567777776665542 23355666777777777766655555566667777777777


Q ss_pred             CCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952          352 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  424 (497)
Q Consensus       352 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  424 (497)
                      |.++...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence            7666655555666677777777777766665566666677777777777776665666666677777777776

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.54  E-value=5.7e-15  Score=145.10  Aligned_cols=188  Identities=15%  Similarity=0.139  Sum_probs=134.1

Q ss_pred             CCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEec
Q 010952          246 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL  325 (497)
Q Consensus       246 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  325 (497)
                      .+++.|+++++.+.. .+..+  .++|+.|++++|.+...+    ..+++|++|++++|.++.. +. +..  +|++|++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEEC
Confidence            389999999888775 22222  378999999988877433    4578899999988887763 22 332  8888999


Q ss_pred             cCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChh
Q 010952          326 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA  405 (497)
Q Consensus       326 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~  405 (497)
                      ++|.++... .   .+++|+.|++++|.++..+.    .+++|+.|++++|.++.. |. +.  ++|+.|++++|.++.+
T Consensus       128 s~N~l~~lp-~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~l-p~-l~--~~L~~L~Ls~N~L~~l  195 (571)
T 3cvr_A          128 DNNQLTMLP-E---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFL-PE-LP--ESLEALDVSTNLLESL  195 (571)
T ss_dssp             CSSCCSCCC-C---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC-CC-CC--TTCCEEECCSSCCSSC
T ss_pred             CCCcCCCCC-C---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCc-ch-hh--CCCCEEECcCCCCCch
Confidence            888876522 2   57888888888888876322    567888888888887774 33 43  7888888888888755


Q ss_pred             hHHhhhhcCCC-------CeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCC
Q 010952          406 GVKHIKDLSSL-------TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL  462 (497)
Q Consensus       406 ~~~~~~~l~~L-------~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~  462 (497)
                      ..  +..  +|       +.|++++| .++. +|..+..+++|+.|++++|++++..+..+..+
T Consensus       196 p~--~~~--~L~~~~~~L~~L~Ls~N-~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          196 PA--VPV--RNHHSEETEIFFRCREN-RITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CC--CC----------CCEEEECCSS-CCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             hh--HHH--hhhcccccceEEecCCC-ccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            33  332  56       88888888 6775 45566678888888888888888777666543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.53  E-value=3.6e-15  Score=133.03  Aligned_cols=169  Identities=23%  Similarity=0.342  Sum_probs=130.9

Q ss_pred             CCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEe
Q 010952          245 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN  324 (497)
Q Consensus       245 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  324 (497)
                      +.++..++++.+.+.+..  .+..+++|+.|++++|.+....  .+..+++|++|++++|.+.....  +..+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            344555666767666433  3456788999999998876543  57788999999999998877544  78889999999


Q ss_pred             ccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCCh
Q 010952          325 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD  404 (497)
Q Consensus       325 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~  404 (497)
                      +++|.+....  .+.. ++|+.|++++|.++..  ..+..+++|+.|++++|++++..  .+..+++|+.|++++|.+.+
T Consensus        92 L~~N~l~~l~--~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           92 VNRNRLKNLN--GIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CCSSCCSCCT--TCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCB
T ss_pred             CCCCccCCcC--cccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcc
Confidence            9999877532  2333 8899999999988874  35778899999999999988752  57888999999999999887


Q ss_pred             hhHHhhhhcCCCCeecccCCCCCCh
Q 010952          405 AGVKHIKDLSSLTLLNLSQNCNLTD  429 (497)
Q Consensus       405 ~~~~~~~~l~~L~~L~l~~~~~l~~  429 (497)
                      .  ..+..+++|+.|++++| .++.
T Consensus       165 ~--~~l~~l~~L~~L~l~~N-~~~~  186 (263)
T 1xeu_A          165 T--GGLTRLKKVNWIDLTGQ-KCVN  186 (263)
T ss_dssp             C--TTSTTCCCCCEEEEEEE-EEEC
T ss_pred             h--HHhccCCCCCEEeCCCC-cccC
Confidence            7  56777899999999998 5544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.53  E-value=2.7e-15  Score=147.36  Aligned_cols=189  Identities=21%  Similarity=0.138  Sum_probs=146.6

Q ss_pred             CCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeec
Q 010952          222 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL  301 (497)
Q Consensus       222 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l  301 (497)
                      .+++.|++++|.+.+ .+..+  .++|+.|++++|.+... +   ..+++|+.|++++|.+...+.  +..  +|++|++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCCcch--hhc--CCCEEEC
Confidence            489999999998876 33333  37899999999998843 3   457899999999998876433  333  8999999


Q ss_pred             cCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChH
Q 010952          302 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS  381 (497)
Q Consensus       302 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  381 (497)
                      ++|.+.... .   .+++|+.|++++|.++....    .+++|+.|++++|.++..+.  +.  ++|+.|++++|.++..
T Consensus       128 s~N~l~~lp-~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~l  195 (571)
T 3cvr_A          128 DNNQLTMLP-E---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESL  195 (571)
T ss_dssp             CSSCCSCCC-C---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSC
T ss_pred             CCCcCCCCC-C---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCch
Confidence            999887632 2   67899999999998875322    57899999999999887433  44  8999999999998854


Q ss_pred             HHHHhhccCCC-------CeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCC
Q 010952          382 GAAYLRNFKNL-------RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT  439 (497)
Q Consensus       382 ~~~~l~~~~~L-------~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~  439 (497)
                      ..  +..  +|       +.|++++|.++.+ +..+..+++|+.|+|++| .+++..|..+..+.
T Consensus       196 p~--~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          196 PA--VPV--RNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDN-PLSSRIRESLSQQT  254 (571)
T ss_dssp             CC--CC----------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSS-SCCHHHHHHHHHHH
T ss_pred             hh--HHH--hhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCC-cCCCcCHHHHHHhh
Confidence            32  322  66       9999999999976 555666999999999999 89988888877543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.53  E-value=1.4e-15  Score=142.04  Aligned_cols=225  Identities=15%  Similarity=0.082  Sum_probs=162.4

Q ss_pred             CCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEc-CCCCCCChHHHHHHhCCCCCC
Q 010952           50 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF-RRNNAITAQGMKAFAGLINLV  128 (497)
Q Consensus        50 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~l~~l~~L~  128 (497)
                      .+++++|+|+++.++.....+|+++++|++|++++|.........+|.++++++++.. .++. +....+..|..+++|+
T Consensus        29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~-l~~l~~~~f~~l~~L~  107 (350)
T 4ay9_X           29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN-LLYINPEAFQNLPNLQ  107 (350)
T ss_dssp             CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT-CCEECTTSBCCCTTCC
T ss_pred             CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc-ccccCchhhhhccccc
Confidence            3689999999999975444568999999999999984334344567888988887554 4555 5666677899999999


Q ss_pred             EEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCC-CCCEEEeeccccCchhHHhhhcCCCCcEEEccC
Q 010952          129 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG  207 (497)
Q Consensus       129 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  207 (497)
                      +|++++|.........+....++..+++.++..+.......+..+. .++.|++++|.++......+ ...+|+++.+.+
T Consensus       108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~  186 (350)
T 4ay9_X          108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSD  186 (350)
T ss_dssp             EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTT
T ss_pred             cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhcc
Confidence            9999997533333344556678889999877767665556666654 68899999999986554444 346799999986


Q ss_pred             -CCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCC
Q 010952          208 -CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC  280 (497)
Q Consensus       208 -~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  280 (497)
                       +.+.......|..+++|+.|++++|.+.......   +.+|+.|.+..+.-....+ .+..+++|+.+++.+.
T Consensus       187 ~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          187 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             CTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             CCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence             5665544457789999999999999988765444   4556666654442221222 3667889999998753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.51  E-value=6.9e-15  Score=128.37  Aligned_cols=130  Identities=23%  Similarity=0.229  Sum_probs=76.0

Q ss_pred             CCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEe
Q 010952          294 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL  373 (497)
Q Consensus       294 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  373 (497)
                      ++|++|++++|.+....+..+..+++|++|++++|.+.......+..+++|+.|++++|.++......+..+++|+.|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            45666666666655544455555666666666666655444444555666666666666665544444555666666666


Q ss_pred             cCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952          374 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  424 (497)
Q Consensus       374 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  424 (497)
                      ++|.+... |..+..+++|+.|++++|.+.......+..+++|+.|++++|
T Consensus       120 s~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          120 CCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             CSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             cCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            66665532 344455666666666666666554444555666666666666

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.49  E-value=2e-14  Score=116.39  Aligned_cols=127  Identities=26%  Similarity=0.270  Sum_probs=70.6

Q ss_pred             CCCcEEEcCCCCCC-HhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeec
Q 010952          342 SSLKSLNLDARQIT-DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN  420 (497)
Q Consensus       342 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  420 (497)
                      ++++.|++++|.++ ...+..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            44555555554444 11222334455555555555555543  3345556666666666666554444555566666666


Q ss_pred             ccCCCCCChh-HHHHhhcCCCCcEEEeeCCccChhHH---HhhcCCcccceeecc
Q 010952          421 LSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLE  471 (497)
Q Consensus       421 l~~~~~l~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~---~~l~~~~~L~~L~l~  471 (497)
                      +++| .+++. .+..+..+++|+.|++++|++++...   ..+..+++|+.|+++
T Consensus        95 ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            6666 55553 23556666666667666666665443   355666777777665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.48  E-value=1.4e-14  Score=119.91  Aligned_cols=132  Identities=24%  Similarity=0.248  Sum_probs=83.0

Q ss_pred             CCCcEEEcCCCCCC-HhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeec
Q 010952          342 SSLKSLNLDARQIT-DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN  420 (497)
Q Consensus       342 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  420 (497)
                      ++|+.|++++|.++ ...+..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45555555555554 11222334556666666666666554  4455666777777777776664455555567777777


Q ss_pred             ccCCCCCChhH-HHHhhcCCCCcEEEeeCCccChhHH---HhhcCCcccceeecccCCCC
Q 010952          421 LSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLESCKVT  476 (497)
Q Consensus       421 l~~~~~l~~~~-~~~l~~~~~L~~L~l~~~~l~~~~~---~~l~~~~~L~~L~l~~~~~~  476 (497)
                      +++| .+++.. +..+..+++|+.|++++|++++...   ..+..+++|+.|++++|.+.
T Consensus       102 Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            7777 566532 2566677777777777777766543   46677778888888877654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.46  E-value=5e-14  Score=114.04  Aligned_cols=127  Identities=20%  Similarity=0.233  Sum_probs=66.3

Q ss_pred             CCCCEEeccCCCCC-hHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeee
Q 010952          318 TNLESINLSFTGIS-DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE  396 (497)
Q Consensus       318 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  396 (497)
                      ++|+.|++++|.+. ...+..+..+++|+.|++++|.++..  ..+..+++|+.|++++|.+++..+..+..+++|+.|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            34444444444443 12222334455555555555555443  3444555666666666655554444445566666666


Q ss_pred             ecCCCCChhh-HHhhhhcCCCCeecccCCCCCChhHH---HHhhcCCCCcEEEee
Q 010952          397 ICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTL---ELISGLTGLVSLNVS  447 (497)
Q Consensus       397 l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~---~~l~~~~~L~~L~l~  447 (497)
                      +++|.+++.. +..+..+++|++|++++| .+++..+   ..+..+++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            6666665542 244555666666666666 4544333   345556666666554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.44  E-value=3.3e-14  Score=117.76  Aligned_cols=134  Identities=20%  Similarity=0.193  Sum_probs=90.4

Q ss_pred             CCCCCEEeccCCCCC-hHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCee
Q 010952          317 LTNLESINLSFTGIS-DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL  395 (497)
Q Consensus       317 ~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  395 (497)
                      .++|++|++++|.+. ...+..+..+++|+.|++++|.++..  ..+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            355666666666554 22233345566677777777766654  455667778888888877776555566667888888


Q ss_pred             eecCCCCChhhH-HhhhhcCCCCeecccCCCCCChhHH---HHhhcCCCCcEEEeeCCccCh
Q 010952          396 EICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTL---ELISGLTGLVSLNVSNSRITS  453 (497)
Q Consensus       396 ~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~---~~l~~~~~L~~L~l~~~~l~~  453 (497)
                      ++++|.+++... ..+..+++|++|++++| .++...+   ..+..+++|+.|++++|.+.+
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            888888777532 56667788888888888 5655443   467778888888888887654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.44  E-value=1.3e-15  Score=150.58  Aligned_cols=104  Identities=20%  Similarity=0.240  Sum_probs=49.8

Q ss_pred             CcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEee
Q 010952          368 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS  447 (497)
Q Consensus       368 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~  447 (497)
                      |+.|++++|.+++. |. +..+++|+.|++++|.++.. |..++.+++|+.|+|++| .++. +| .++.+++|+.|+++
T Consensus       443 L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N-~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          443 VRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDN-ALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             CSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSS-CCCC-CG-GGTTCSSCCEEECC
T ss_pred             ceEEEecCCCCCCC-cC-ccccccCcEeecCccccccc-chhhhcCCCCCEEECCCC-CCCC-Cc-ccCCCCCCcEEECC
Confidence            44455555544442 22 44445555555555554432 334444555555555555 4443 22 44455555555555


Q ss_pred             CCccChhH-HHhhcCCcccceeecccCCCCH
Q 010952          448 NSRITSAG-LRHLKPLKNLRSLTLESCKVTA  477 (497)
Q Consensus       448 ~~~l~~~~-~~~l~~~~~L~~L~l~~~~~~~  477 (497)
                      +|.+++.. +..+..+++|+.|++++|+++.
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence            55554443 4444555555555555554433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.42  E-value=1.4e-15  Score=150.36  Aligned_cols=197  Identities=19%  Similarity=0.169  Sum_probs=151.6

Q ss_pred             hCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcc-------------cchHHHHhhcCCCCCCEEe-ccCCCCCh
Q 010952          267 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-------------VGSSGLRHLSGLTNLESIN-LSFTGISD  332 (497)
Q Consensus       267 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~-------------~~~~~~~~l~~~~~L~~L~-l~~~~~~~  332 (497)
                      ..+++|+.|+++++.+. ..|..++.+++|+.|++.++.             .....+..++.+++|+.|+ ++.+.+.+
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            45789999999998775 456778888899999986653             2334445566777888887 45443221


Q ss_pred             HHHH-----HhcC--CCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChh
Q 010952          333 GSLR-----KLAG--LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA  405 (497)
Q Consensus       333 ~~~~-----~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~  405 (497)
                      ....     .+..  ...|+.|++++|.++..+  .+..+++|+.|++++|.++. .|..+..+++|+.|++++|.+++.
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp--~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~l  501 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV  501 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             hhhhhhhcccccccCccCceEEEecCCCCCCCc--CccccccCcEeecCcccccc-cchhhhcCCCCCEEECCCCCCCCC
Confidence            1110     1111  246999999999998753  38889999999999999984 467889999999999999999986


Q ss_pred             hHHhhhhcCCCCeecccCCCCCChhH-HHHhhcCCCCcEEEeeCCccChhHH---HhhcCCcccceeec
Q 010952          406 GVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTL  470 (497)
Q Consensus       406 ~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~l~~~~~L~~L~l~~~~l~~~~~---~~l~~~~~L~~L~l  470 (497)
                       + .+..+++|+.|++++| .++... |..+..+++|+.|++++|++++..+   ..+..+|+|+.|++
T Consensus       502 -p-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          502 -D-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             -G-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             -c-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence             4 7888999999999999 888876 8899999999999999999887543   23345888988864

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.39  E-value=1.6e-13  Score=114.39  Aligned_cols=135  Identities=18%  Similarity=0.224  Sum_probs=79.9

Q ss_pred             CCCCCcEEEcCCCCCCHhHHHHhcC-CCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCe
Q 010952          340 GLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL  418 (497)
Q Consensus       340 ~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~  418 (497)
                      ++++|+.|++++|.++..  ..+.. .++|+.|++++|.+++.  ..+..+++|+.|++++|.++...+..+..+++|++
T Consensus        17 ~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            344555555555554432  11222 23666666666666553  34556666777777777666654444466677777


Q ss_pred             ecccCCCCCChhHH-HHhhcCCCCcEEEeeCCccChhHHH---hhcCCcccceeecccCCCCHHH
Q 010952          419 LNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRITSAGLR---HLKPLKNLRSLTLESCKVTAND  479 (497)
Q Consensus       419 L~l~~~~~l~~~~~-~~l~~~~~L~~L~l~~~~l~~~~~~---~l~~~~~L~~L~l~~~~~~~~~  479 (497)
                      |++++| .+++... ..+..+++|+.|++++|+++.....   .+..+++|+.|++++|...+..
T Consensus        93 L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~~  156 (176)
T 1a9n_A           93 LILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQ  156 (176)
T ss_dssp             EECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHHH
T ss_pred             EECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHHH
Confidence            777777 5654321 2566777777777777776643322   3667777888888777655543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.39  E-value=1.4e-13  Score=129.90  Aligned_cols=240  Identities=13%  Similarity=0.134  Sum_probs=140.4

Q ss_pred             CCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeecc
Q 010952          223 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS  302 (497)
Q Consensus       223 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~  302 (497)
                      +|+.+.+..+ +......+|.. .+|+.+.+.. .+.......|..|++|+.+.+..+.+.......|. +.+|+.+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence            4444444433 33333333433 2455555543 22222233455555555555555544444333343 3556666654


Q ss_pred             CcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcC---
Q 010952          303 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT---  379 (497)
Q Consensus       303 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---  379 (497)
                      .+ +.......+..+++|+.+.+..+ +......++.+ .+|+.+.+.. .++..+..+|..|++|+.+.+.++.+.   
T Consensus       212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~  287 (401)
T 4fdw_A          212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDP  287 (401)
T ss_dssp             TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred             Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence            32 33333344556666666666543 33333333444 5677777733 344444566777778888877776543   


Q ss_pred             --hHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHH
Q 010952          380 --DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR  457 (497)
Q Consensus       380 --~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~  457 (497)
                        .....++..|++|+.+.+. +.+..++...|..|.+|+.+.|.++  ++.....++.++ +|+.+.+.+|........
T Consensus       288 ~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~  363 (401)
T 4fdw_A          288 EAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK  363 (401)
T ss_dssp             TCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred             ccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence              3345567778888888887 3466666677788888888888664  666666677788 888888888876665556


Q ss_pred             hhcCCc-ccceeecccCC
Q 010952          458 HLKPLK-NLRSLTLESCK  474 (497)
Q Consensus       458 ~l~~~~-~L~~L~l~~~~  474 (497)
                      .|..++ +++.|.+-.+.
T Consensus       364 ~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          364 VWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             SCCCSCTTCCEEEECGGG
T ss_pred             cccCCCCCccEEEeCHHH
Confidence            666664 67888887654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.37  E-value=4.3e-13  Score=126.67  Aligned_cols=128  Identities=11%  Similarity=0.157  Sum_probs=66.9

Q ss_pred             CCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCC-----HhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCC
Q 010952          318 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT-----DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL  392 (497)
Q Consensus       318 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  392 (497)
                      .+|+.+.+.. .+......++.++++|+.+.+.++...     ..+..+|..|++|+.+.+.+ .+......++..|.+|
T Consensus       248 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L  325 (401)
T 4fdw_A          248 SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKV  325 (401)
T ss_dssp             CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSC
T ss_pred             CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCc
Confidence            3444444422 233333334445555555555444332     22234555666666666663 3444444556666666


Q ss_pred             CeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCC-CCcEEEeeCCc
Q 010952          393 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT-GLVSLNVSNSR  450 (497)
Q Consensus       393 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~-~L~~L~l~~~~  450 (497)
                      +.+.+..+ +..+....|..+ +|+.+++.+| .........+.+++ +++.|.+..+.
T Consensus       326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CEEEECTT-CCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH
Confidence            66666433 555555566666 6777777666 44443334444553 56777776554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.37  E-value=1.1e-13  Score=117.20  Aligned_cols=128  Identities=17%  Similarity=0.235  Sum_probs=78.8

Q ss_pred             CEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHH-HhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecC
Q 010952          321 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG  399 (497)
Q Consensus       321 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  399 (497)
                      ++++++++.+.... ..+  .++++.|++++|.++..... .+..+++|+.|++++|.+++..+..+..+++|+.|++++
T Consensus        11 ~~l~~s~~~l~~ip-~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIP-RDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCC-SCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCc-cCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            56666666654321 111  23667777777766654332 255666677777777766665555666666677777776


Q ss_pred             CCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccC
Q 010952          400 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  452 (497)
Q Consensus       400 ~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~  452 (497)
                      |.+.+..+..+..+++|++|++++| .++...+..+..+++|+.|++++|++.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            6666665555666666666666666 566655556666666666666666655

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.37  E-value=1.6e-13  Score=130.30  Aligned_cols=237  Identities=16%  Similarity=0.137  Sum_probs=121.8

Q ss_pred             hhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCc
Q 010952          193 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL  272 (497)
Q Consensus       193 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L  272 (497)
                      .+.++++|+.+.+.++. ......+|.++.+|+.+.+..+ +.......|..+..|+.+.+..+....  ........+|
T Consensus       157 aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i--~~~~~~~~~l  232 (394)
T 4fs7_A          157 AFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYL--GDFALSKTGV  232 (394)
T ss_dssp             TTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEE--CTTTTTTCCC
T ss_pred             hhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEe--ehhhcccCCC
Confidence            34455555555554331 1111233445555555555433 222223344455555555443332110  1112233456


Q ss_pred             CEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCC
Q 010952          273 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR  352 (497)
Q Consensus       273 ~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  352 (497)
                      +.+.+... ........+..+..++.+.+..+.. ......+..++.++.+......+.+   ..+..+.+|+.+.+..+
T Consensus       233 ~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~~---~~F~~~~~L~~i~l~~~  307 (394)
T 4fs7_A          233 KNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVPE---KTFYGCSSLTEVKLLDS  307 (394)
T ss_dssp             CEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEECT---TTTTTCTTCCEEEECTT
T ss_pred             ceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeecc---ccccccccccccccccc
Confidence            66655432 2222223344556666666654322 1222334555666666655443222   23455667777776543


Q ss_pred             CCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHH
Q 010952          353 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL  432 (497)
Q Consensus       353 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  432 (497)
                       +...+..++..|.+|+.+.+..+ ++.....++..|.+|+.+++..+ +..++...|..|.+|+.+++..+  +... .
T Consensus       308 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~--~~~~-~  381 (394)
T 4fs7_A          308 -VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR--LEQY-R  381 (394)
T ss_dssp             -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG--GGGG-G
T ss_pred             -cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC--CEEh-h
Confidence             44344456667777777777543 44444556677778888877654 66666667777888888888664  3322 2


Q ss_pred             HHhhcCCCCcEE
Q 010952          433 ELISGLTGLVSL  444 (497)
Q Consensus       433 ~~l~~~~~L~~L  444 (497)
                      ..+.++++|+.+
T Consensus       382 ~~F~~c~~L~~I  393 (394)
T 4fs7_A          382 YDFEDTTKFKWI  393 (394)
T ss_dssp             GGBCTTCEEEEE
T ss_pred             heecCCCCCcEE
Confidence            346666666654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.37  E-value=5.4e-13  Score=126.68  Aligned_cols=335  Identities=16%  Similarity=0.171  Sum_probs=168.8

Q ss_pred             cChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCcccc
Q 010952           88 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM  167 (497)
Q Consensus        88 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  167 (497)
                      ++..+..+|.+|.+|+.+.+...  +......+|.+|++|+.+++.++ ...-...++..+..|+.+.+..         
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~---------  126 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL---------  126 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT---------
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC---------
Confidence            44445566777777777777643  34444556667777777776542 1111223444455554443332         


Q ss_pred             ccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCC
Q 010952          168 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS  247 (497)
Q Consensus       168 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  247 (497)
                                      + +.......+.++..+.........  .....+|.++.+|+.+.+.++. .......|..+.+
T Consensus       127 ----------------~-l~~i~~~aF~~~~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~  186 (394)
T 4fs7_A          127 ----------------M-LKSIGVEAFKGCDFKEITIPEGVT--VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGK  186 (394)
T ss_dssp             ----------------T-CCEECTTTTTTCCCSEEECCTTCC--EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTT
T ss_pred             ----------------c-eeeecceeeecccccccccCcccc--ccchhhhcccCCCcEEecCCcc-ceeccccccCCCC
Confidence                            1 111111223333222222111111  1112356778888888886542 3333455667777


Q ss_pred             CCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccC
Q 010952          248 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF  327 (497)
Q Consensus       248 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  327 (497)
                      |+.+.+..+ +.......+.++..|+.+.+..+... ... ......+|+.+.+.... .......+..+..++.+.+..
T Consensus       187 L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~-~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~  262 (394)
T 4fs7_A          187 LKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGD-FALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQN  262 (394)
T ss_dssp             CCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECT-TTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECC
T ss_pred             ceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eeh-hhcccCCCceEEECCCc-eecccccccccccceeEEcCC
Confidence            777777544 33233344666777777766544211 111 11223566666664321 112223445566677776654


Q ss_pred             CCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhH
Q 010952          328 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV  407 (497)
Q Consensus       328 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~  407 (497)
                      +. .......+..+..++.+......+.+   ..+..+.+|+.+.+..+ +......++..|.+|+.+++.. .++.++.
T Consensus       263 ~~-~~i~~~~F~~~~~l~~~~~~~~~i~~---~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~  336 (394)
T 4fs7_A          263 NK-LRIGGSLFYNCSGLKKVIYGSVIVPE---KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGK  336 (394)
T ss_dssp             TT-CEECSCTTTTCTTCCEEEECSSEECT---TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECT
T ss_pred             Cc-ceeeccccccccccceeccCceeecc---ccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhH
Confidence            42 12222334455666666655443322   34555666666666543 3333344556666666666643 2444545


Q ss_pred             HhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCccccee
Q 010952          408 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL  468 (497)
Q Consensus       408 ~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L  468 (497)
                      ..|..|.+|+.+++..+  ++.....++.+|++|+.+++..+- .. ...+|..|++|+.+
T Consensus       337 ~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~~-~~-~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          337 RSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKRL-EQ-YRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGGG-GG-GGGGBCTTCEEEEE
T ss_pred             HhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCCC-EE-hhheecCCCCCcEE
Confidence            55666666666666543  444444556666666666665431 11 12345556666554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.37  E-value=1.1e-14  Score=124.00  Aligned_cols=133  Identities=23%  Similarity=0.246  Sum_probs=100.0

Q ss_pred             HhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCC
Q 010952          337 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL  416 (497)
Q Consensus       337 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L  416 (497)
                      .+..+++|+.|++++|.++...  .+..+++|+.|++++|.+... +..+..+++|+.|++++|.+++..  .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLS--GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCCcCC--ccccCCCC
Confidence            5667778888888887776632  556678888888888887743 445566788999999999888753  57778899


Q ss_pred             CeecccCCCCCChhHH-HHhhcCCCCcEEEeeCCccChhHHH----------hhcCCcccceeecccCCCCH
Q 010952          417 TLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRITSAGLR----------HLKPLKNLRSLTLESCKVTA  477 (497)
Q Consensus       417 ~~L~l~~~~~l~~~~~-~~l~~~~~L~~L~l~~~~l~~~~~~----------~l~~~~~L~~L~l~~~~~~~  477 (497)
                      +.|++++| .++.... ..+..+++|++|++++|++.+..+.          .+..+++|+.|+  ++++++
T Consensus       118 ~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          118 RVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             SEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            99999998 7776433 5788889999999999988665432          367788999887  665554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.34  E-value=7.2e-13  Score=110.63  Aligned_cols=129  Identities=19%  Similarity=0.200  Sum_probs=68.9

Q ss_pred             CEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCC
Q 010952          321 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG  400 (497)
Q Consensus       321 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  400 (497)
                      +.++++++.+.....   ...++|+.|++++|.++......+..+++|+.|++++|.++...+..+..+++|+.|++++|
T Consensus        10 ~~l~~~~~~l~~~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSCCSSCCT---TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCccCCC---CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            455555555443211   12345666666666655443344455566666666666655544444455566666666666


Q ss_pred             CCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccCh
Q 010952          401 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS  453 (497)
Q Consensus       401 ~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~  453 (497)
                      .++...+..+..+++|++|++++| .++...+..+..+++|+.|++++|++..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence            655554444455556666666655 4554433334455555555555555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.31  E-value=7.5e-13  Score=111.85  Aligned_cols=126  Identities=22%  Similarity=0.243  Sum_probs=65.4

Q ss_pred             CEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCC
Q 010952          321 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG  400 (497)
Q Consensus       321 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  400 (497)
                      +.++++++.+.... ..  -.++++.|++++|.++... ..+..+++|+.|++++|.++...+..+..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~~ip-~~--~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLP-KG--IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCC-SC--CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCC-CC--CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            34555555544321 11  1245666666665555332 34455555666666555555544444555555555555555


Q ss_pred             CCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCcc
Q 010952          401 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI  451 (497)
Q Consensus       401 ~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l  451 (497)
                      .++...+..+..+++|++|+|++| .++...+..+..+++|+.|++++|++
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence            555554444555555555555555 45544334444555555555555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.30  E-value=1.2e-12  Score=109.05  Aligned_cols=133  Identities=18%  Similarity=0.240  Sum_probs=84.6

Q ss_pred             CCCCCCEEeccCCCCChHHHHHhcCC-CCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCe
Q 010952          316 GLTNLESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS  394 (497)
Q Consensus       316 ~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  394 (497)
                      .+++|+.|++++|.+...  ..+..+ ++|+.|++++|.++..  ..+..+++|+.|++++|.++...+..+..+++|+.
T Consensus        17 ~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            455666666666655532  112232 3677777777766653  45566777777777777777654444566777777


Q ss_pred             eeecCCCCChhhH-HhhhhcCCCCeecccCCCCCChhHHH---HhhcCCCCcEEEeeCCccCh
Q 010952          395 LEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLE---LISGLTGLVSLNVSNSRITS  453 (497)
Q Consensus       395 L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~---~l~~~~~L~~L~l~~~~l~~  453 (497)
                      |++++|.+..... ..+..+++|+.|++++| .++.....   .+..+++|+.|++++|...+
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            7777777766532 25666777888888877 55443221   46677888888888887554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.26  E-value=1.1e-11  Score=100.52  Aligned_cols=101  Identities=20%  Similarity=0.415  Sum_probs=74.3

Q ss_pred             CCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcC----CCCcEEEeeCCc-cChhHHHhhcCCccc
Q 010952          391 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL----TGLVSLNVSNSR-ITSAGLRHLKPLKNL  465 (497)
Q Consensus       391 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~----~~L~~L~l~~~~-l~~~~~~~l~~~~~L  465 (497)
                      .|+.|++++|.+++.+...+..+++|++|+|++|..+++.....++.+    ++|+.|++++|. +++.....+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            567777777777777676777778888888888877787777777764    468888888884 787777777778888


Q ss_pred             ceeecccC-CCCHHH--HHHHhhcCCCCCc
Q 010952          466 RSLTLESC-KVTAND--IKRLQSRDLPNLV  492 (497)
Q Consensus       466 ~~L~l~~~-~~~~~~--~~~l~~~~~p~L~  492 (497)
                      ++|++++| .+++.+  ...+. ..+|+++
T Consensus       142 ~~L~L~~c~~Itd~gl~~~~L~-~~lP~l~  170 (176)
T 3e4g_A          142 KYLFLSDLPGVKEKEKIVQAFK-TSLPSLE  170 (176)
T ss_dssp             CEEEEESCTTCCCHHHHHHHHH-HHCTTCE
T ss_pred             CEEECCCCCCCCchHHHHHHHH-HHCCCcE
Confidence            88888888 577765  34454 6677765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.26  E-value=3.7e-12  Score=106.29  Aligned_cols=107  Identities=20%  Similarity=0.211  Sum_probs=55.3

Q ss_pred             CCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeee
Q 010952          318 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI  397 (497)
Q Consensus       318 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  397 (497)
                      ++|++|++++|.+.......+.++++|+.|++++|.++......+..+++|+.|++++|.++...+..+..+++|+.|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            45555555555554433333445555555555555555433333445555555555555555444444445555555555


Q ss_pred             cCCCCChhhHHhhhhcCCCCeecccCC
Q 010952          398 CGGGLTDAGVKHIKDLSSLTLLNLSQN  424 (497)
Q Consensus       398 ~~~~l~~~~~~~~~~l~~L~~L~l~~~  424 (497)
                      ++|.++......+..+++|++|++++|
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCC
Confidence            555555444433444555555555555

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.25  E-value=2.5e-12  Score=108.59  Aligned_cols=124  Identities=18%  Similarity=0.203  Sum_probs=79.0

Q ss_pred             CEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCC
Q 010952          297 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA  376 (497)
Q Consensus       297 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  376 (497)
                      +.++++++.+.... ..  ..++|++|++++|.+... +..+.++++|+.|++++|.++......+..+++|+.|++++|
T Consensus        13 ~~l~~~~~~l~~ip-~~--~~~~l~~L~L~~n~i~~i-p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLP-KG--IPRDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCC-SC--CCTTCCEEECCSSCCCSC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCC-CC--CCCCCCEEECCCCcCchh-HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            45666665554322 11  124677777777766532 245666677777777777766655555666777777777777


Q ss_pred             CcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952          377 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  424 (497)
Q Consensus       377 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  424 (497)
                      .++...+..+..+++|+.|++++|.+.......+..+++|+.|++++|
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence            776665556666777777777777776665555666677777777776

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.25  E-value=1.5e-11  Score=103.82  Aligned_cols=89  Identities=24%  Similarity=0.234  Sum_probs=41.3

Q ss_pred             ccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCC
Q 010952          170 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK  249 (497)
Q Consensus       170 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  249 (497)
                      +..+++|++|++++|.++...+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+....+..++.+++|+
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  129 (192)
T 1w8a_A           50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred             cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence            44444455555544444444444444444455555554444443333344444444444444444444344444444444


Q ss_pred             EEEccCCCC
Q 010952          250 VLNLGFNEI  258 (497)
Q Consensus       250 ~L~l~~~~~  258 (497)
                      .|++++|.+
T Consensus       130 ~L~L~~N~l  138 (192)
T 1w8a_A          130 SLNLASNPF  138 (192)
T ss_dssp             EEECTTCCB
T ss_pred             EEEeCCCCc
Confidence            444444443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.23  E-value=2e-13  Score=116.26  Aligned_cols=129  Identities=26%  Similarity=0.262  Sum_probs=104.9

Q ss_pred             HhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCC
Q 010952          361 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG  440 (497)
Q Consensus       361 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~  440 (497)
                      .+..+++|+.|++++|.+... + .+..+++|+.|++++|.+... +..+..+++|++|++++| .++.. + .+..+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N-~l~~l-~-~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYN-QIASL-S-GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEE-ECCCH-H-HHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCC-cCCcC-C-ccccCCC
Confidence            677899999999999998874 4 778899999999999999865 445666799999999999 78873 3 6888999


Q ss_pred             CcEEEeeCCccChhHH-HhhcCCcccceeecccCCCCHHHH--------HHHhhcCCCCCccCC
Q 010952          441 LVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCKVTANDI--------KRLQSRDLPNLVSFR  495 (497)
Q Consensus       441 L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~--------~~l~~~~~p~L~~l~  495 (497)
                      |+.|++++|.+++... ..+..+++|+.|++++|+++....        .......+|+|+.|+
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            9999999999987543 678899999999999998866422        111124788888764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.22  E-value=8.6e-13  Score=134.61  Aligned_cols=115  Identities=17%  Similarity=0.119  Sum_probs=47.1

Q ss_pred             hhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCc
Q 010952          266 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK  345 (497)
Q Consensus       266 l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  345 (497)
                      +..++.|+.|++++|.+.... ..+..+++|++|++++|.+. ..+..+..+++|++|++++|.++ ..+..+.++++|+
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~  296 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNIS-ANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK  296 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCCC-GGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred             hccCCCCcEEECCCCCCCCCC-hhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence            344444555555544443211 11223444444444444444 22233344444444444444444 2233334444444


Q ss_pred             EEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHH
Q 010952          346 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA  384 (497)
Q Consensus       346 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  384 (497)
                      .|++++|.++.. +..+..+++|+.|++++|.+++..+.
T Consensus       297 ~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          297 YFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             EEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             EEECCCCCCCcc-ChhhhcCCCccEEeCCCCccCCCChH
Confidence            444444444322 22234444444444444444443333

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.20  E-value=2.5e-12  Score=131.25  Aligned_cols=163  Identities=16%  Similarity=0.075  Sum_probs=90.0

Q ss_pred             CCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCcc----ccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCC
Q 010952           50 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI----QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI  125 (497)
Q Consensus        50 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~  125 (497)
                      .+.+++|+++++.+.. .+..+.....|+.+.+....    .+. ..+..+..++.|++|+|++|.. . .++..+..++
T Consensus       172 ~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l-~-~l~~~~~~l~  247 (727)
T 4b8c_D          172 TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQI-F-NISANIFKYD  247 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCC-S-CCCGGGGGCC
T ss_pred             CCccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCC-C-CCChhhcCCC
Confidence            4678889998877653 34344344445544443311    121 3456677888899999988874 3 4455566888


Q ss_pred             CCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEc
Q 010952          126 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL  205 (497)
Q Consensus       126 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  205 (497)
                      +|++|++++|. +...+..+..+++|++|++++|. +. ..+..+..+++|++|++++|.++ ..+..+.++++|+.|++
T Consensus       248 ~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L  323 (727)
T 4b8c_D          248 FLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGV  323 (727)
T ss_dssp             SCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEEC
T ss_pred             CCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeC
Confidence            89999998864 55667778888889999988865 33 35677888888888888888887 44556888888888888


Q ss_pred             cCCCCChHHHHHhhC
Q 010952          206 EGCPVTAACLDSLSA  220 (497)
Q Consensus       206 ~~~~~~~~~~~~l~~  220 (497)
                      ++|.+.+..+..+..
T Consensus       324 ~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          324 EGNPLEKQFLKILTE  338 (727)
T ss_dssp             TTSCCCSHHHHHHHH
T ss_pred             CCCccCCCChHHHhh
Confidence            888888766666543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.11  E-value=5.2e-10  Score=103.59  Aligned_cols=178  Identities=19%  Similarity=0.201  Sum_probs=87.3

Q ss_pred             hCCCCCCEeeccCcccch---------HHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHH
Q 010952          291 TGLCNLKCLELSDTQVGS---------SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA  361 (497)
Q Consensus       291 ~~~~~L~~L~l~~~~~~~---------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  361 (497)
                      ..+++|+.|.+.+.....         .....+..+|+|+.|.++++.....  ..+ ..++|+.|.+..+.+.......
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l--~~~-~~~~L~~L~L~~~~l~~~~l~~  212 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI--GKK-PRPNLKSLEIISGGLPDSVVED  212 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC--CSC-BCTTCSEEEEECSBCCHHHHHH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee--ccc-cCCCCcEEEEecCCCChHHHHH
Confidence            346788888876542210         1223445566777777766521110  111 2566666666666666554444


Q ss_pred             hc--CCCCCcEEEecCC--Cc-Ch----HHHHHh--hccCCCCeeeecCCCCChhhHHhhh---hcCCCCeecccCCCCC
Q 010952          362 LT--SLTGLTHLDLFGA--RI-TD----SGAAYL--RNFKNLRSLEICGGGLTDAGVKHIK---DLSSLTLLNLSQNCNL  427 (497)
Q Consensus       362 ~~--~~~~L~~L~l~~~--~~-~~----~~~~~l--~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~L~~L~l~~~~~l  427 (497)
                      +.  .+|+|+.|+++.+  .. ..    .....+  ..+|+|+.|++++|.+.+.....+.   .+++|++|+|+.| .+
T Consensus       213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L  291 (362)
T 2ra8_A          213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VL  291 (362)
T ss_dssp             HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CC
T ss_pred             HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CC
Confidence            43  4666666666421  10 00    000111  1356666666666665544333332   2456666666655 55


Q ss_pred             ChhHHHHh----hcCCCCcEEEeeCCccChhHHHhhcC-CcccceeecccCC
Q 010952          428 TDKTLELI----SGLTGLVSLNVSNSRITSAGLRHLKP-LKNLRSLTLESCK  474 (497)
Q Consensus       428 ~~~~~~~l----~~~~~L~~L~l~~~~l~~~~~~~l~~-~~~L~~L~l~~~~  474 (497)
                      ++.....+    ..+++|+.|++++|++++.....+.. +  ...+++++++
T Consensus       292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             BHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             ChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            55433322    23455666666666655555444432 2  2335555544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.07  E-value=3.5e-10  Score=91.65  Aligned_cols=90  Identities=21%  Similarity=0.323  Sum_probs=73.3

Q ss_pred             ceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCC----CCCCEEEcCCCCCCChHHHHHHhCCCCC
Q 010952           52 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL----SNLTSLSFRRNNAITAQGMKAFAGLINL  127 (497)
Q Consensus        52 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~l~~l~~L  127 (497)
                      .|++|+++++.+++.....+..|++|++|++++|..+++.....++.+    ++|++|++++|..+++.....++++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            588888888888888888888888888888888887888888888764    4788888888877788888888888888


Q ss_pred             CEEeccCccccccc
Q 010952          128 VKLDLERCTRIHGG  141 (497)
Q Consensus       128 ~~L~l~~~~~~~~~  141 (497)
                      ++|++++|+.+++.
T Consensus       142 ~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          142 KYLFLSDLPGVKEK  155 (176)
T ss_dssp             CEEEEESCTTCCCH
T ss_pred             CEEECCCCCCCCch
Confidence            88888888766543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.07  E-value=4.5e-11  Score=98.65  Aligned_cols=105  Identities=18%  Similarity=0.226  Sum_probs=69.2

Q ss_pred             CcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccC
Q 010952          344 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ  423 (497)
Q Consensus       344 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~  423 (497)
                      .+.++++++.++... ..+  .++|+.|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|++|+|++
T Consensus        11 ~~~l~~s~n~l~~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            456777777666532 111  36677777777777766566666677777777777777766555566677777777777


Q ss_pred             CCCCChhHHHHhhcCCCCcEEEeeCCccC
Q 010952          424 NCNLTDKTLELISGLTGLVSLNVSNSRIT  452 (497)
Q Consensus       424 ~~~l~~~~~~~l~~~~~L~~L~l~~~~l~  452 (497)
                      | .++...+..+..+++|+.|++++|++.
T Consensus        88 N-~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 N-QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             S-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             C-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            7 666655555666777777777777654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.07  E-value=1.9e-10  Score=109.04  Aligned_cols=130  Identities=22%  Similarity=0.238  Sum_probs=69.7

Q ss_pred             HHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCC
Q 010952          288 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG  367 (497)
Q Consensus       288 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  367 (497)
                      .+|..+.+|+.+.+..... ......+..++.|+.+.+.. .+......++.++.+|+.+.+..+ ++..+..+|.+|.+
T Consensus       259 ~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            3455566666666644321 12233455666677776653 333334455666777777777543 44444456677777


Q ss_pred             CcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952          368 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  424 (497)
Q Consensus       368 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  424 (497)
                      |+++.+..+ ++.....+|..|.+|+.+++.++...   ...+..+.+|+.+.+..+
T Consensus       336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC--------
T ss_pred             CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCC
Confidence            777777543 44444556777777777777765322   123445667777766554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.05  E-value=2.5e-09  Score=98.98  Aligned_cols=160  Identities=20%  Similarity=0.205  Sum_probs=82.6

Q ss_pred             hhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHh--CCCCCCEeeccCc--ccc-hHHHHhhc
Q 010952          241 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT--GLCNLKCLELSDT--QVG-SSGLRHLS  315 (497)
Q Consensus       241 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~--~~~~L~~L~l~~~--~~~-~~~~~~l~  315 (497)
                      .+..+|+|+.|.++++...... . + ..++|+.|.+..+.+.......+.  .+|+|++|+++.+  ... ......+.
T Consensus       167 ll~~~P~L~~L~L~g~~~l~l~-~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNLSIG-K-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTCBCC-S-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             HHhcCCCCcEEEEeCCCCceec-c-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            3455666777766655211110 0 1 256677777766666555544444  4666776666421  100 00000000


Q ss_pred             CCCCCCEEeccCCCCChHHHHHh--cCCCCCcEEEcCCCCCCHhHHHHhc---CCCCCcEEEecCCCcChHHHHHh----
Q 010952          316 GLTNLESINLSFTGISDGSLRKL--AGLSSLKSLNLDARQITDTGLAALT---SLTGLTHLDLFGARITDSGAAYL----  386 (497)
Q Consensus       316 ~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l----  386 (497)
                                          ..+  ..+|+|+.|.+.+|.+.+.+...+.   .+++|+.|+++.|.+.+.++..+    
T Consensus       244 --------------------~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L  303 (362)
T 2ra8_A          244 --------------------PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV  303 (362)
T ss_dssp             --------------------GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTH
T ss_pred             --------------------HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhc
Confidence                                001  1355666666655555543332222   35667777777776666544333    


Q ss_pred             hccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952          387 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  424 (497)
Q Consensus       387 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  424 (497)
                      ..+++|+.|++++|.+++.....+...- ...++++++
T Consensus       304 ~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~  340 (362)
T 2ra8_A          304 DKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDS  340 (362)
T ss_dssp             HHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSB
T ss_pred             ccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCC
Confidence            3457777777777777776666555411 345677666

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.03  E-value=8.1e-11  Score=97.42  Aligned_cols=104  Identities=21%  Similarity=0.222  Sum_probs=67.4

Q ss_pred             cEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952          345 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  424 (497)
Q Consensus       345 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  424 (497)
                      +.++++++.++... ..+  .++|+.|++++|.+.+..+..+..+++|+.|++++|++....+..+..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~~iP-~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVP-AGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccC-CCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            56677776665432 111  266777777777776665666666777777777777777665555566677777777777


Q ss_pred             CCCChhHHHHhhcCCCCcEEEeeCCccC
Q 010952          425 CNLTDKTLELISGLTGLVSLNVSNSRIT  452 (497)
Q Consensus       425 ~~l~~~~~~~l~~~~~L~~L~l~~~~l~  452 (497)
                       .++...+..+..+++|+.|++++|++.
T Consensus        92 -~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 -HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             -CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             -ccceeCHHHhccccCCCEEEeCCCCcc
Confidence             666554445666677777777777655

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.03  E-value=3.2e-10  Score=107.50  Aligned_cols=131  Identities=18%  Similarity=0.233  Sum_probs=74.0

Q ss_pred             HHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCC
Q 010952          336 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS  415 (497)
Q Consensus       336 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~  415 (497)
                      .++.++..|+.+.+.... ...+..++.++++|+.+.+.. .+......++..|.+|+.+++..+ ++.++...|..|.+
T Consensus       259 ~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ceeeecccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            345566667777665432 222334566677777777653 333333455666777777777543 55555556777777


Q ss_pred             CCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCC
Q 010952          416 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK  474 (497)
Q Consensus       416 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~  474 (497)
                      |+.+.|..+  ++.....++.+|.+|+.+++.++...   ...+..+.+|+.+.+..+.
T Consensus       336 L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          336 LERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             CCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred             CCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence            777777553  55555566777777777777766422   2456667777777776553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.02  E-value=2.7e-09  Score=89.12  Aligned_cols=123  Identities=20%  Similarity=0.222  Sum_probs=59.9

Q ss_pred             HHhcCCCCCcEEEcCCC-CCCHhHHHH----hcCCCCCcEEEecCCCcChHHHHH----hhccCCCCeeeecCCCCChhh
Q 010952          336 RKLAGLSSLKSLNLDAR-QITDTGLAA----LTSLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDAG  406 (497)
Q Consensus       336 ~~l~~~~~L~~L~l~~~-~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~l~~~~  406 (497)
                      ..+...++|++|++++| .+.+.+...    +...++|++|++++|.+.+.+...    +...++|++|++++|.+++.+
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            44445566666666665 665544322    223455555555555555443322    233344555555555554443


Q ss_pred             HHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEe--eCCccChhHH----HhhcCCcccceeecccCCCCHHH
Q 010952          407 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV--SNSRITSAGL----RHLKPLKNLRSLTLESCKVTAND  479 (497)
Q Consensus       407 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l--~~~~l~~~~~----~~l~~~~~L~~L~l~~~~~~~~~  479 (497)
                      ...+                     ...+...++|++|++  ++|.+++...    +.+...++|++|++++|.+.+.+
T Consensus       110 ~~~l---------------------~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~  167 (185)
T 1io0_A          110 ILAL---------------------VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL  167 (185)
T ss_dssp             HHHH---------------------HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred             HHHH---------------------HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence            3222                     223334445555555  4455554332    23344456666666666655543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.00  E-value=1.1e-10  Score=96.23  Aligned_cols=105  Identities=23%  Similarity=0.213  Sum_probs=69.9

Q ss_pred             CCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecC
Q 010952          320 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG  399 (497)
Q Consensus       320 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  399 (497)
                      .+.++++++.+.... ..+  .++++.|++++|.++...+..+..+++|+.|++++|+++...+..+..+++|+.|++++
T Consensus        11 ~~~l~~s~n~l~~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            456777776655422 111  36677777777777766555666777777777777777766555566777777777777


Q ss_pred             CCCChhhHHhhhhcCCCCeecccCCCCCC
Q 010952          400 GGLTDAGVKHIKDLSSLTLLNLSQNCNLT  428 (497)
Q Consensus       400 ~~l~~~~~~~~~~l~~L~~L~l~~~~~l~  428 (497)
                      |.+....+..+..+++|+.|+|++| .+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N-~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNN-PWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSS-CBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCC-CCC
Confidence            7777665555666777777777777 443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.95  E-value=1.2e-08  Score=85.17  Aligned_cols=117  Identities=21%  Similarity=0.160  Sum_probs=85.2

Q ss_pred             hHHHHhhcCCCCCCEEeccCC-CCChHHHH----HhcCCCCCcEEEcCCCCCCHhHHHHh----cCCCCCcEEEecCCCc
Q 010952          308 SSGLRHLSGLTNLESINLSFT-GISDGSLR----KLAGLSSLKSLNLDARQITDTGLAAL----TSLTGLTHLDLFGARI  378 (497)
Q Consensus       308 ~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~  378 (497)
                      ......+...+.|++|++++| .+++....    .+...++|++|++++|.+.+.+...+    ...++|++|++++|.+
T Consensus        26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence            344556778899999999999 99876543    45567999999999999998775444    4568999999999999


Q ss_pred             ChHHHHH----hhccCCCCeeee--cCCCCChhhHHhhh----hcCCCCeecccCC
Q 010952          379 TDSGAAY----LRNFKNLRSLEI--CGGGLTDAGVKHIK----DLSSLTLLNLSQN  424 (497)
Q Consensus       379 ~~~~~~~----l~~~~~L~~L~l--~~~~l~~~~~~~~~----~l~~L~~L~l~~~  424 (497)
                      ++.+...    +...++|++|++  ++|.+++.+...+.    ..++|++|++++|
T Consensus       106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            9876544    455677777777  66777766544332    2345555555555

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.95  E-value=2.2e-10  Score=94.74  Aligned_cols=104  Identities=18%  Similarity=0.207  Sum_probs=74.3

Q ss_pred             CEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCC
Q 010952          321 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG  400 (497)
Q Consensus       321 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  400 (497)
                      +.++++++.+.... ..+  .++|+.|++++|.++...+..+..+++|+.|++++|+++...+..+..+++|+.|++++|
T Consensus        15 ~~l~~~~n~l~~iP-~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVP-AGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccC-CCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            56777777665422 212  367888888888877765666777888888888888877765555677788888888888


Q ss_pred             CCChhhHHhhhhcCCCCeecccCCCCCC
Q 010952          401 GLTDAGVKHIKDLSSLTLLNLSQNCNLT  428 (497)
Q Consensus       401 ~l~~~~~~~~~~l~~L~~L~l~~~~~l~  428 (497)
                      .+....+..+..+++|+.|++++| .+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N-~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNN-PWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSS-CBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCC-Ccc
Confidence            887765555777788888888888 444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.73  E-value=6e-09  Score=97.03  Aligned_cols=102  Identities=25%  Similarity=0.278  Sum_probs=59.1

Q ss_pred             EEcCCC-CCCHhHHHHhcCCCCCcEEEecC-CCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952          347 LNLDAR-QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  424 (497)
Q Consensus       347 L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  424 (497)
                      ++++++ .++... . +..+++|+.|++++ |.+....+..+..+++|+.|++++|.+.+..+..|..+++|+.|+|++|
T Consensus        13 v~~~~~n~l~~ip-~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALDSLH-H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCTTTT-T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCCccC-C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            455554 555432 2 55566666666664 6666655555666666666666666666665555666666666666666


Q ss_pred             CCCChhHHHHhhcCCCCcEEEeeCCccC
Q 010952          425 CNLTDKTLELISGLTGLVSLNVSNSRIT  452 (497)
Q Consensus       425 ~~l~~~~~~~l~~~~~L~~L~l~~~~l~  452 (497)
                       .++...+..+..++ |+.|++.+|++.
T Consensus        91 -~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 -ALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             -CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             -ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence             55544333333333 666666666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.69  E-value=1.2e-08  Score=96.35  Aligned_cols=120  Identities=17%  Similarity=0.202  Sum_probs=61.4

Q ss_pred             cCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCe
Q 010952          315 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS  394 (497)
Q Consensus       315 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  394 (497)
                      ..+..|+.+.+..+ +......++.++.+|+.+.+... +...+..++..|.+|+.+.+.++.+......++..|.+|+.
T Consensus       237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~  314 (379)
T 4h09_A          237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS  314 (379)
T ss_dssp             TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred             cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence            34444444444432 22222233444555555555432 22223344555666666666655555444555666666666


Q ss_pred             eeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCC
Q 010952          395 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT  439 (497)
Q Consensus       395 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~  439 (497)
                      +.+..+ ++.++...|..|.+|+++.+..+  ++.....++.+++
T Consensus       315 i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~--v~~I~~~aF~~c~  356 (379)
T 4h09_A          315 VTLPTA-LKTIQVYAFKNCKALSTISYPKS--ITLIESGAFEGSS  356 (379)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTSS
T ss_pred             EEcCcc-ccEEHHHHhhCCCCCCEEEECCc--cCEEchhHhhCCC
Confidence            666432 44444556666777777766543  4444444455543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.69  E-value=2.1e-08  Score=94.60  Aligned_cols=145  Identities=18%  Similarity=0.168  Sum_probs=90.2

Q ss_pred             hhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCC
Q 010952          241 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL  320 (497)
Q Consensus       241 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  320 (497)
                      .+.....++.+.+..+ +.......+..+..|+.+.+..+ +.......+..+.+|+.+.+..+ +.......+..+++|
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence            3445566666666433 22222334566777777777654 44444455666777888777543 333334456778888


Q ss_pred             CEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccC
Q 010952          321 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK  390 (497)
Q Consensus       321 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~  390 (497)
                      +.+.+..+.+......++.++.+|+.+.+..+ ++..+..+|.+|.+|+.+.+..+ ++.....++..++
T Consensus       289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            88888777666656667778888888888653 55545567778888888887654 4433344555553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.63  E-value=1.4e-08  Score=94.45  Aligned_cols=104  Identities=20%  Similarity=0.239  Sum_probs=83.6

Q ss_pred             EEeccCC-CCChHHHHHhcCCCCCcEEEcCC-CCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecC
Q 010952          322 SINLSFT-GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG  399 (497)
Q Consensus       322 ~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  399 (497)
                      .++.+++ .+.. ++. +..+++|+.|++++ |.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4566766 6665 344 78888999999986 888887667788899999999999999988788888899999999999


Q ss_pred             CCCChhhHHhhhhcCCCCeecccCCCCCCh
Q 010952          400 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTD  429 (497)
Q Consensus       400 ~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~  429 (497)
                      |.+....+..+..++ |+.|+|.+| .+..
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N-~~~c  117 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGN-PLHC  117 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSS-CCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCC-CccC
Confidence            999887655555454 999999998 5653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.23  E-value=1.4e-05  Score=65.96  Aligned_cols=116  Identities=17%  Similarity=0.190  Sum_probs=66.9

Q ss_pred             HHHhcCCCCCcEEEcCCC-CCCHhHHH----HhcCCCCCcEEEecCCCcChHHHHH----hhccCCCCeeeecCCCCChh
Q 010952          335 LRKLAGLSSLKSLNLDAR-QITDTGLA----ALTSLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDA  405 (497)
Q Consensus       335 ~~~l~~~~~L~~L~l~~~-~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~l~~~  405 (497)
                      ...+.+-+.|+.|+++++ .+.+.+..    ++..-..|+.|++++|.+.+.....    +.....|++|+++.|.|++.
T Consensus        34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~  113 (197)
T 1pgv_A           34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE  113 (197)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence            344455677777777774 77665543    3334566777777777777655433    34556777777777777766


Q ss_pred             hHHhhhh----cCCCCeecccCCC--CCChh----HHHHhhcCCCCcEEEeeCCc
Q 010952          406 GVKHIKD----LSSLTLLNLSQNC--NLTDK----TLELISGLTGLVSLNVSNSR  450 (497)
Q Consensus       406 ~~~~~~~----l~~L~~L~l~~~~--~l~~~----~~~~l~~~~~L~~L~l~~~~  450 (497)
                      +...+..    -..|++|+|++|.  .+.+.    +.+.+...+.|+.|+++.+.
T Consensus       114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            6554432    2556666666541  23332    23344445555556555544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.20  E-value=2.5e-05  Score=64.53  Aligned_cols=109  Identities=16%  Similarity=0.211  Sum_probs=47.7

Q ss_pred             CCCCCcEEEecCC-CcChHHHH----HhhccCCCCeeeecCCCCChhhHHhhh----hcCCCCeecccCCCCCChhHHH-
Q 010952          364 SLTGLTHLDLFGA-RITDSGAA----YLRNFKNLRSLEICGGGLTDAGVKHIK----DLSSLTLLNLSQNCNLTDKTLE-  433 (497)
Q Consensus       364 ~~~~L~~L~l~~~-~~~~~~~~----~l~~~~~L~~L~l~~~~l~~~~~~~~~----~l~~L~~L~l~~~~~l~~~~~~-  433 (497)
                      .-+.|++|+++++ .+.+.+..    .+.....|+.|++++|.+.+.+...+.    .-.+|++|+|++| .+.+.... 
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~a  117 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLAR  117 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHH
Confidence            3445555555543 44443322    223344555555555555544433332    2245555555555 45444332 


Q ss_pred             ---HhhcCCCCcEEEeeCC---ccChh----HHHhhcCCcccceeecccC
Q 010952          434 ---LISGLTGLVSLNVSNS---RITSA----GLRHLKPLKNLRSLTLESC  473 (497)
Q Consensus       434 ---~l~~~~~L~~L~l~~~---~l~~~----~~~~l~~~~~L~~L~l~~~  473 (497)
                         .+...+.|++|++++|   .+...    +.+.+...+.|+.|+++.+
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence               2223344555555433   23322    2233334445555555444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.13  E-value=1.2e-06  Score=76.65  Aligned_cols=81  Identities=25%  Similarity=0.305  Sum_probs=44.0

Q ss_pred             hccCCCCeeeecCCCCChhh--HHhhhhcCCCCeecccCCCCCChh-HHHHhhcCCCCcEEEeeCCccChhH-------H
Q 010952          387 RNFKNLRSLEICGGGLTDAG--VKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAG-------L  456 (497)
Q Consensus       387 ~~~~~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L~l~~~~~l~~~-~~~~l~~~~~L~~L~l~~~~l~~~~-------~  456 (497)
                      ..+++|+.|++++|.+.+..  +..+..+++|+.|+|++| .+++. ....+..+ +|++|++++|++.+..       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence            34666666666666666532  233445666777777666 55543 11222222 6666666666665311       1


Q ss_pred             HhhcCCcccceee
Q 010952          457 RHLKPLKNLRSLT  469 (497)
Q Consensus       457 ~~l~~~~~L~~L~  469 (497)
                      ..+..+|+|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2345566666655

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.05  E-value=1.7e-06  Score=75.74  Aligned_cols=83  Identities=24%  Similarity=0.347  Sum_probs=63.4

Q ss_pred             hhcCCCCeecccCCCCCCh--hHHHHhhcCCCCcEEEeeCCccChh-HHHhhcCCcccceeecccCCCCH-----HHHHH
Q 010952          411 KDLSSLTLLNLSQNCNLTD--KTLELISGLTGLVSLNVSNSRITSA-GLRHLKPLKNLRSLTLESCKVTA-----NDIKR  482 (497)
Q Consensus       411 ~~l~~L~~L~l~~~~~l~~--~~~~~l~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~  482 (497)
                      ..+++|++|+|++| .++.  .++..+..+++|+.|+|++|.+.+. ....+..+ +|++|++++|+++.     .....
T Consensus       167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence            46899999999999 7877  3445667899999999999999875 22344444 99999999999985     23333


Q ss_pred             HhhcCCCCCccCC
Q 010952          483 LQSRDLPNLVSFR  495 (497)
Q Consensus       483 l~~~~~p~L~~l~  495 (497)
                      .....+|+|+.|.
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            3336889998874

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.18  E-value=0.026  Score=43.24  Aligned_cols=52  Identities=19%  Similarity=0.127  Sum_probs=31.2

Q ss_pred             EEEecCCCcC--hHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952          370 HLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  424 (497)
Q Consensus       370 ~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  424 (497)
                      .++.++..++  .. |..  -.++|+.|++++|.|+.+....|..+++|+.|+|++|
T Consensus        12 ~v~Cs~~~L~~~~v-P~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           12 LVDCGRRGLTWASL-PTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             EEECCSSCCCTTTS-CSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             EEEeCCCCCccccC-CCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            4555555554  22 221  1345777777777776665556666667777777776

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.41  E-value=0.038  Score=42.28  Aligned_cols=55  Identities=24%  Similarity=0.212  Sum_probs=36.5

Q ss_pred             eeeecCCCCC--hhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccC
Q 010952          394 SLEICGGGLT--DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  452 (497)
Q Consensus       394 ~L~l~~~~l~--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~  452 (497)
                      .++-++++++  .+ +..+  .++|++|+|++| .++......+..+++|+.|+|.+|++.
T Consensus        12 ~v~Cs~~~L~~~~v-P~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASL-PTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTS-CSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccC-CCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence            4555666665  33 3222  256888888888 777766666777788888888877754

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=83.45  E-value=1.5  Score=26.84  Aligned_cols=34  Identities=26%  Similarity=0.470  Sum_probs=24.2

Q ss_pred             CCchHHHHHHHHhhhhhhccChhhHHHHhhhhcCCCCCchhHHHHHH
Q 010952            1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIA   47 (497)
Q Consensus         1 ~lp~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   47 (497)
                      .||+|++..||.++      ....+..   |.    .+|..|...+.
T Consensus        11 ~LP~eil~~I~~~L------~~~dl~~---~~----~Vck~w~~~~~   44 (53)
T 1fs1_A           11 SLPDELLLGIFSCL------CLPELLK---VS----GVCKRWYRLAS   44 (53)
T ss_dssp             SSCHHHHHHHHTTS------CGGGHHH---HH----TTCHHHHHHHT
T ss_pred             HCCHHHHHHHHHcC------CHHHHHH---HH----HHHHHHHHHhC
Confidence            38999999999997      3333332   33    67888887665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	497
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.2 bits (173), Expect = 6e-14
 Identities = 82/386 (21%), Positives = 144/386 (37%), Gaps = 36/386 (9%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110
           +  +   L  ++VTD   +   D   + +L  +    I    ++ +  L+NLT ++F  N
Sbjct: 22  AEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRL-GIKS--IDGVEYLNNLTQINFSNN 76

Query: 111 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 170
                  +     L  LV + +          +     +   +L       I        
Sbjct: 77  QL---TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 171 SGLTNLKSLQISCSKVTDSGIAYL-----------KGLQKLTLLNLEGCPV-TAACLDSL 218
                L S  IS         +             K L  LT L          + +  L
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 219 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 278
           + L +L  L     Q+S         + +L  L+L  N++ D  +  L  LTNL  L+L 
Sbjct: 194 AKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 279 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 338
           +  I    L  L+GL  L  L+L   Q+  S +  L+GLT L ++ L+   + D S    
Sbjct: 250 NNQI--SNLAPLSGLTKLTELKLGANQI--SNISPLAGLTALTNLELNENQLEDISPIS- 304

Query: 339 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 398
             L +L  L L    I+   ++ ++SLT L  L     +++D  +  L N  N+  L   
Sbjct: 305 -NLKNLTYLTLYFNNIS--DISPVSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAG 359

Query: 399 GGGLTDAGVKHIKDLSSLTLLNLSQN 424
              ++   +  + +L+ +T L L+  
Sbjct: 360 HNQIS--DLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.5 bits (135), Expect = 3e-09
 Identities = 79/362 (21%), Positives = 144/362 (39%), Gaps = 35/362 (9%)

Query: 124 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 183
           L  +  L  +R      G+ ++ G+  L +L     +    +D+ PL  LT L  + ++ 
Sbjct: 43  LDQVTTLQADRL-----GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNN 97

Query: 184 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD------------SLSALGSLFYLNLNR 231
           +++ D              L            +            ++S + +L  L   +
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 232 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG-LTNLESLNLDSCGIGDEGLVNL 290
                +       + +L  L            + +   LTNLESL   +  I    +  L
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI--SDITPL 215

Query: 291 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 350
             L NL  L L+  Q+    +  L+ LTNL  ++L+   IS+  L  L+GL+ L  L L 
Sbjct: 216 GILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLG 271

Query: 351 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 410
           A QI  + ++ L  LT LT+L+L          + + N KNL  L +    ++   +  +
Sbjct: 272 ANQI--SNISPLAGLTALTNLELN--ENQLEDISPISNLKNLTYLTLYFNNIS--DISPV 325

Query: 411 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 470
             L+ L  L  + N  ++D  +  ++ LT +  L+  +++I+   L  L  L  +  L L
Sbjct: 326 SSLTKLQRLFFA-NNKVSD--VSSLANLTNINWLSAGHNQIS--DLTPLANLTRITQLGL 380

Query: 471 ES 472
             
Sbjct: 381 ND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 8/109 (7%)

Query: 24  SLEAFRDCALQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFN 83
            L             N        S   +L  + L  +++  S +  +   + LQ L F 
Sbjct: 280 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI--SDISPVSSLTKLQRLFFA 337

Query: 84  FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 132
              ++S   +  L  L+N+  LS   N       +   A L  + +L L
Sbjct: 338 NN-KVS--DVSSLANLTNINWLSAGHNQ---ISDLTPLANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 65/365 (17%), Positives = 126/365 (34%), Gaps = 66/365 (18%)

Query: 165 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 224
           + +   + L       +  + VTD        L ++T L  +   +    +D +  L +L
Sbjct: 13  NQIFTDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK--SIDGVEYLNNL 68

Query: 225 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 284
             +N +  QL+         +  L  + +  N+I D   +         +L  +     D
Sbjct: 69  TQINFSNNQLT--DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 126

Query: 285 EGLV------------NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS- 331
                            ++ +  L  L         + +  L  L NL ++       + 
Sbjct: 127 PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK 186

Query: 332 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD----------- 380
              +  LA L++L+SL     QI  + +  L  LT L  L L G ++ D           
Sbjct: 187 VSDISVLAKLTNLESLIATNNQI--SDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT 244

Query: 381 ---------SGAAYLRNFKNLRSLEICGGGLTD--------------------AGVKHIK 411
                    S  A L     L  L++    +++                      +  I 
Sbjct: 245 DLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS 304

Query: 412 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 471
           +L +LT L L  N N++D  +  +S LT L  L  +N++++   +  L  L N+  L+  
Sbjct: 305 NLKNLTYLTLYFN-NISD--ISPVSSLTKLQRLFFANNKVS--DVSSLANLTNINWLSAG 359

Query: 472 SCKVT 476
             +++
Sbjct: 360 HNQIS 364

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (140), Expect = 6e-10
 Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 10/90 (11%)

Query: 247 SLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT----GLCNLKCLEL 301
            ++ L++   E++D     L   L   + + LD CG+ +    +++        L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 302 SDTQVGSSGLRHL-----SGLTNLESINLS 326
              ++G  G+  +     +    ++ ++L 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (129), Expect = 1e-08
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 319 NLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDL 373
           +++S+++    +SD    +L   L   + + LD   +T+       +AL     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 374 FGARITDSGAAYL-----RNFKNLRSLEICG 399
               + D G   +          ++ L +  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (125), Expect = 5e-08
 Identities = 13/91 (14%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 295 NLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLA----GLSSLKSLNL 349
           +++ L++   ++  +    L   L   + + L   G+++   + ++       +L  LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 350 DARQITDTGLAALTSL-----TGLTHLDLFG 375
            + ++ D G+  +          +  L L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (123), Expect = 7e-08
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 32/116 (27%)

Query: 175 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 234
           +++SL I C +++D+  A L                       L  L     + L+ C L
Sbjct: 3   DIQSLDIQCEELSDARWAEL-----------------------LPLLQQCQVVRLDDCGL 39

Query: 235 SDDGCEKFSKI----GSLKVLNLGFNEITDECLVHL-----KGLTNLESLNLDSCG 281
           ++  C+  S       +L  LNL  NE+ D  +  +          ++ L+L +C 
Sbjct: 40  TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (120), Expect = 2e-07
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 9/80 (11%)

Query: 247 SLKVLNLGFNEITDECLVH----LKGLTNLESLNLDSCGIGDEGLVNLTG-----LCNLK 297
            L+VL L   +++D         L    +L  L+L +  +GD G++ L        C L+
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 298 CLELSDTQVGSSGLRHLSGL 317
            L L D          L  L
Sbjct: 430 QLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 5e-07
 Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 9/80 (11%)

Query: 223 SLFYLNLNRCQLSDDGCEK----FSKIGSLKVLNLGFNEITDECLVHL-----KGLTNLE 273
            L  L L  C +SD  C           SL+ L+L  N + D  ++ L     +    LE
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 274 SLNLDSCGIGDEGLVNLTGL 293
            L L      +E    L  L
Sbjct: 430 QLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 8e-07
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 9/90 (10%)

Query: 265 HLKGLTNLESLNLDSCGIGDEGLVN----LTGLCNLKCLELSDTQVGSSGLRHLSG---- 316
             +  + L  L L  C + D    +    L    +L+ L+LS+  +G +G+  L      
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 317 -LTNLESINLSFTGISDGSLRKLAGLSSLK 345
               LE + L     S+    +L  L   K
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 9e-07
 Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 11/93 (11%)

Query: 391 NLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELIS----GLTGLVSLN 445
           +++SL+I    L+DA    +   L    ++ L  +C LT+   + IS        L  LN
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLD-DCGLTEARCKDISSALRVNPALAELN 61

Query: 446 VSNSRITSAGLRHL-----KPLKNLRSLTLESC 473
           + ++ +   G+  +      P   ++ L+L++C
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 11/91 (12%)

Query: 368 LTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLS 422
           +  LD+    ++D+  A L    +  + + +   GLT+A  K I    +   +L  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 423 QNCNLTDKTLELI-----SGLTGLVSLNVSN 448
            N  L D  +  +     +    +  L++ N
Sbjct: 64  SN-ELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 1e-05
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 9/81 (11%)

Query: 342 SSLKSLNLDARQITDTGLA----ALTSLTGLTHLDLFGARITDSGAAYL-----RNFKNL 392
           S L+ L L    ++D+  +     L +   L  LDL    + D+G   L     +    L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 393 RSLEICGGGLTDAGVKHIKDL 413
             L +     ++     ++ L
Sbjct: 429 EQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 3e-05
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 76  NLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLI----NLVKL 130
           ++QSLD   C ++SD     L   L     +       +T    K  +  +     L +L
Sbjct: 3   DIQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAEL 60

Query: 131 DLERCTRIHGGLVNLKGLMKLESLNIKWCN 160
           +L        G+  +   ++  S  I+  +
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLS 90

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 3e-05
 Identities = 14/94 (14%), Positives = 35/94 (37%), Gaps = 6/94 (6%)

Query: 151 LESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAY----LKGLQKLTLLNL 205
           ++SL+I+ C  ++D+    L   L   + +++    +T++        L+    L  LNL
Sbjct: 4   IQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 206 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 239
               +    +  +          + +  L +   
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 4e-05
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 10/95 (10%)

Query: 313 HLSGLTNLESINLSFTGISDGSLRKLA----GLSSLKSLNLDARQITDTGLAALTS---- 364
                + L  + L+   +SD S   LA       SL+ L+L    + D G+  L      
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 365 -LTGLTHLDLFGARITDSGAAYLRN-FKNLRSLEI 397
               L  L L+    ++     L+   K+  SL +
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 5e-05
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 9/87 (10%)

Query: 192 AYLKGLQKLTLLNLEGCPVTAACL----DSLSALGSLFYLNLNRCQLSDDGCEKFSKI-- 245
              +    L +L L  C V+ +       +L A  SL  L+L+   L D G  +  +   
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 246 ---GSLKVLNLGFNEITDECLVHLKGL 269
                L+ L L     ++E    L+ L
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 2e-04
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 415 SLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRITSAGLRH----LKPLKNLRSLT 469
            +  L++     L+D    EL+  L     + + +  +T A  +     L+    L  L 
Sbjct: 3   DIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 470 LESCKVTANDIKRL 483
           L S ++    +  +
Sbjct: 62  LRSNELGDVGVHCV 75

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 2e-04
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 12/94 (12%)

Query: 409 HIKDLSSLTLLNLSQNCNLTDKTL----ELISGLTGLVSLNVSNSRITSAGLRHL----- 459
             +  S L +L L+ +C+++D +       +     L  L++SN+ +  AG+  L     
Sbjct: 364 LGQPGSVLRVLWLA-DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 460 KPLKNLRSLTLESCKVTANDIKRLQS--RDLPNL 491
           +P   L  L L     +     RLQ+  +D P+L
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.003
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 10/87 (11%)

Query: 144 NLKGLMKLESLNIKWCNCITDSDMKP----LSGLTNLKSLQISCSKVTDSGIAYL-KGLQ 198
             +    L  L +  C+ ++DS        L    +L+ L +S + + D+GI  L + ++
Sbjct: 364 LGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 199 ----KLTLLNLEGCPVTAACLDSLSAL 221
                L  L L     +    D L AL
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 6e-09
 Identities = 39/265 (14%), Positives = 82/265 (30%), Gaps = 23/265 (8%)

Query: 52  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 111
            +++     S +      H      +Q +D +  +         L   S L +LS     
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 112 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 171
            ++   +   A   NLV+L+L  C+                   +  C+ + + ++    
Sbjct: 83  -LSDPIVNTLAKNSNLVRLNLSGCSGFS---------EFALQTLLSSCSRLDELNLSWCF 132

Query: 172 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 231
             T                   L G +K    +     V             +     + 
Sbjct: 133 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP-------NLVHLDLSDS 185

Query: 232 CQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 290
             L +D  ++F ++  L+ L+L    +I  E L+ L  +  L++L +    + D  L  L
Sbjct: 186 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLL 244

Query: 291 TGLC---NLKCLELSDTQVGSSGLR 312
                   + C   +     + G +
Sbjct: 245 KEALPHLQINCSHFTTIARPTIGNK 269

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 9e-09
 Identities = 38/243 (15%), Positives = 81/243 (33%), Gaps = 14/243 (5%)

Query: 126 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 185
            ++     R   +   L       +++ +++        +    LS  + L++L +   +
Sbjct: 24  GVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 186 VTDSGIAYLKGLQKLTLLNLEGC--------PVTAACLDSLSALGSLFYLNLNRCQLSDD 237
           ++D  +  L     L  LNL GC            +    L  L   +  +     +   
Sbjct: 83  LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142

Query: 238 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 296
                  I  L +     N    +    ++   NL  L+L     + ++       L  L
Sbjct: 143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 202

Query: 297 KCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 355
           + L LS    +    L  L  +  L+++ +    + DG+L+ L    +L  L ++    T
Sbjct: 203 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFT 259

Query: 356 DTG 358
              
Sbjct: 260 TIA 262

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 5e-07
 Identities = 39/251 (15%), Positives = 78/251 (31%), Gaps = 12/251 (4%)

Query: 96  LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESL 154
              L +   ++FR   +   Q +        +  +DL         L   L    KL++L
Sbjct: 17  TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 76

Query: 155 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 214
           +++    ++D  +  L+  +NL  L +S                   L  L         
Sbjct: 77  SLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 135

Query: 215 LDSLSALGSLFYLNLNRCQLSD---------DGCEKFSKIGSLKVLNLGFNEITDECLVH 265
              +    +     + +  LS                     + +       + ++C   
Sbjct: 136 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 195

Query: 266 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 324
              L  L+ L+L  C  I  E L+ L  +  LK L++       +       L +L+   
Sbjct: 196 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINC 255

Query: 325 LSFTGISDGSL 335
             FT I+  ++
Sbjct: 256 SHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 1e-06
 Identities = 49/302 (16%), Positives = 96/302 (31%), Gaps = 25/302 (8%)

Query: 129 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 188
            LDL     +H  +     L+    +  +      D  +        ++ + +S S +  
Sbjct: 4   TLDLTGKN-LHPDV--TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 60

Query: 189 SGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 247
           S +   L    KL  L+LEG  ++   +++L+   +L  LNL+ C    +   +      
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 248 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 307
            +        + +  L      T        +        +NL+G           T   
Sbjct: 121 SR--------LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-- 170

Query: 308 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLT 366
                       +         + +   ++   L+ L+ L+L     I    L  L  + 
Sbjct: 171 -----VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 225

Query: 367 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 426
            L  L +FG  + D     L+  + L  L+I     T      I +  +  +  +   C 
Sbjct: 226 TLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGNKKNQEIWGIK--CR 280

Query: 427 LT 428
           LT
Sbjct: 281 LT 282

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 47/260 (18%), Positives = 88/260 (33%), Gaps = 15/260 (5%)

Query: 227 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 286
           L+L    L  D   +    G +       + + D+ L        ++ ++L +  I    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFM-DQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 287 LVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-----TGISDGSLRKLAG 340
           L  +   C  L+ L L   ++    +  L+  +NL  +NLS             L   + 
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 341 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG----ARITDSGAAYLRNFKNLRSLE 396
           L  L              +A       +T L+L G     + +D      R    +    
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 397 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 456
                L +   +    L+ L  L+LS+  ++  +TL  +  +  L +L V    +    L
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTL 241

Query: 457 RHLKPLKNLRSLTLESCKVT 476
           + LK  + L  L +     T
Sbjct: 242 QLLK--EALPHLQINCSHFT 259

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.7 bits (130), Expect = 7e-09
 Identities = 53/282 (18%), Positives = 93/282 (32%), Gaps = 15/282 (5%)

Query: 100 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 159
            +   L  + N  IT      F  L NL  L L               L+KLE L +   
Sbjct: 31  PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL-SK 88

Query: 160 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 219
           N + +   K    L  L+  +   +KV  S    L  +  + L        +     +  
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSGIENGAFQ 147

Query: 220 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 279
            +  L Y+ +    ++           SL  L+L  N+IT      LKGL NL  L L  
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 280 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD------G 333
             I      +L    +L+ L L++ ++       L+    ++ + L    IS        
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 263

Query: 334 SLRKLAGLSSLKSLNLDARQITDTGL--AALTSLTGLTHLDL 373
                   +S   ++L +  +    +  +    +     + L
Sbjct: 264 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.7 bits (125), Expect = 4e-08
 Identities = 41/258 (15%), Positives = 91/258 (35%), Gaps = 11/258 (4%)

Query: 174 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 233
            +   L +  +K+T+      K L+ L  L L    ++     + + L  L  L L++ Q
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 234 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 293
           L +   +    +  L+V      ++       L  +  +E L  +             G+
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQGM 149

Query: 294 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 353
             L  + ++DT + +          +L  ++L    I+      L GL++L  L L    
Sbjct: 150 KKLSYIRIADTNITTI---PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 354 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD------AGV 407
           I+     +L +   L  L L   ++         + K ++ + +    ++          
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGL-ADHKYIQVVYLHNNNISAIGSNDFCPP 265

Query: 408 KHIKDLSSLTLLNLSQNC 425
            +    +S + ++L  N 
Sbjct: 266 GYNTKKASYSGVSLFSNP 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 4e-07
 Identities = 52/276 (18%), Positives = 90/276 (32%), Gaps = 34/276 (12%)

Query: 247 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 306
              +L+L  N+IT+      K L NL +L L +  I          L  L+ L LS  Q+
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 307 GSSGLRHLSGLTNLESINLSFTGISDGSLRKL-----------------------AGLSS 343
                +    L  L       T +       L                        G+  
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 344 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 403
           L  + +    IT        S   LT L L G +IT   AA L+   NL  L +    ++
Sbjct: 152 LSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 404 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS------AGLR 457
                 + +   L  L+L+ N  L       ++    +  + + N+ I++          
Sbjct: 209 AVDNGSLANTPHLRELHLN-NNKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 458 HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 493
           +     +   ++L S  V   +I+    R +    +
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 302

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 46/258 (17%), Positives = 81/258 (31%), Gaps = 34/258 (13%)

Query: 151 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 210
              L+++  N IT+        L NL +L +  +K++         L KL  L L    +
Sbjct: 33  TALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 211 TA---------------------ACLDSLSALGSLFYLNLNRCQLSDDGCEK--FSKIGS 247
                                        + L  +  + L    L   G E   F  +  
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 248 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 307
           L  + +    IT    +      +L  L+LD   I      +L GL NL  L LS   + 
Sbjct: 152 LSYIRIADTNITT---IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 308 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD------TGLAA 361
           +     L+   +L  ++L+   +       LA    ++ + L    I+            
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 267

Query: 362 LTSLTGLTHLDLFGARIT 379
            T     + + LF   + 
Sbjct: 268 NTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 46/283 (16%), Positives = 90/283 (31%), Gaps = 16/283 (5%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110
                +DL  + +T+      K+  NL +L      +IS         L  L  L   +N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKN 89

Query: 111 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 170
             +     K    L  L   + E           L  ++ +E          +  +    
Sbjct: 90  Q-LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT--NPLKSSGIENGAF 146

Query: 171 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 230
            G+  L  ++I+ + +T         L +   L+L+G  +T     SL  L +L  L L+
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 231 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD------ 284
              +S       +    L+ L+L  N++       L     ++ + L +  I        
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDF 262

Query: 285 EGLVNLTGLCNLKCLELSDTQVGSSGLRH--LSGLTNLESINL 325
                 T   +   + L    V    ++      +    ++ L
Sbjct: 263 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 5/162 (3%)

Query: 318 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 377
            +   ++L    I++        L +L +L L   +I+     A   L  L  L L   +
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 378 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 437
           + +      +  + LR  E     +  +    +  +  + L         +        G
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT--NPLKSSGIENGAFQG 148

Query: 438 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 479
           +  L  + ++++ IT+          +L  L L+  K+T  D
Sbjct: 149 MKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVD 187

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 45/227 (19%), Positives = 91/227 (40%), Gaps = 21/227 (9%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110
           ++ + +    S+VTD   +   D   + +L       ++   +E ++ L+NL  L  + N
Sbjct: 19  ANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGT-GVTT--IEGVQYLNNLIGLELKDN 73

Query: 111 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 170
                  +K      NL K+     +      V+    ++           ITD  + PL
Sbjct: 74  QITDLAPLK------NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD--VTPL 125

Query: 171 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 230
           +GL+NL+ L +  +++T+          +     L       + L  L+ L  L  L  +
Sbjct: 126 AGLSNLQVLYLDLNQITNISPLAGLTNLQ----YLSIGNAQVSDLTPLANLSKLTTLKAD 181

Query: 231 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 277
             ++SD      + + +L  ++L  N+I+D  +  L   +NL  + L
Sbjct: 182 DNKISD--ISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 6e-06
 Identities = 48/219 (21%), Positives = 76/219 (34%), Gaps = 22/219 (10%)

Query: 169 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 228
           P   L N   +    S VTD        L  +T L+  G  VT   ++ +  L +L  L 
Sbjct: 14  PDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLE 69

Query: 229 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 288
           L   Q++D    K     +   L+    +            T   +    +      GL 
Sbjct: 70  LKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS 129

Query: 289 NLTGL--------------CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 334
           NL  L                     LS      S L  L+ L+ L ++      ISD  
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-- 187

Query: 335 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 373
           +  LA L +L  ++L   QI+D  ++ L + + L  + L
Sbjct: 188 ISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 8e-05
 Identities = 37/228 (16%), Positives = 68/228 (29%), Gaps = 19/228 (8%)

Query: 122 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 181
             L N +K+   +        V    L  + +L+         + ++ +  L NL  L++
Sbjct: 16  PALANAIKIAAGKSNVT--DTVTQADLDGITTLSAFGTGV---TTIEGVQYLNNLIGLEL 70

Query: 182 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 241
             +++TD              L+       +A     S                  G   
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 242 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 301
              +          + +     +            L         L  L  L  L  L+ 
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQ----------YLSIGNAQVSDLTPLANLSKLTTLKA 180

Query: 302 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 349
            D ++  S +  L+ L NL  ++L    ISD  +  LA  S+L  + L
Sbjct: 181 DDNKI--SDISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 32/212 (15%), Positives = 70/212 (33%), Gaps = 23/212 (10%)

Query: 251 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 310
           +  G + +TD   V    L  + +L+    G+    +  +  L NL  LEL D Q+    
Sbjct: 24  IAAGKSNVTDT--VTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQITDLA 79

Query: 311 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 370
                       ++ +            +  +   +           GL+ L  L    +
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 371 LDLFGARITD--------------SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 416
                + +                S    L N   L +L+     ++D  +  +  L +L
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLASLPNL 197

Query: 417 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 448
             ++L  N  ++D  +  ++  + L  + ++N
Sbjct: 198 IEVHLK-NNQISD--VSPLANTSNLFIVTLTN 226

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 3e-06
 Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 16/211 (7%)

Query: 165 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 224
             +             +    VTD        L  +  +      +    +  +  L ++
Sbjct: 15  KQIFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK--SVQGIQYLPNV 70

Query: 225 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 284
             L LN  +L+D        + +LK L   F +      +                    
Sbjct: 71  TKLFLNGNKLTDIKP-----LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS 125

Query: 285 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 344
           +    +           ++     + L  L+ L  L   +   + I       LAGL+ L
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-----LAGLTKL 180

Query: 345 KSLNLDARQITDTGLAALTSLTGLTHLDLFG 375
           ++L L    I+D  L AL  L  L  L+LF 
Sbjct: 181 QNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 5e-05
 Identities = 39/204 (19%), Positives = 66/204 (32%), Gaps = 17/204 (8%)

Query: 123 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 182
                +K +L++ +      V    L  ++ +     +      ++ +  L N+  L ++
Sbjct: 22  AFAETIKDNLKKKS--VTDAVTQNELNSIDQIIANNSDI---KSVQGIQYLPNVTKLFLN 76

Query: 183 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 242
            +K+T   I  L  L+ L  L L+   V                L  N     +      
Sbjct: 77  GNKLT--DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 243 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 302
                    N   +      L  L          L         +V L GL  L+ L LS
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLD--------TLSLEDNQISDIVPLAGLTKLQNLYLS 186

Query: 303 DTQVGSSGLRHLSGLTNLESINLS 326
              +  S LR L+GL NL+ + L 
Sbjct: 187 KNHI--SDLRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 41/198 (20%), Positives = 80/198 (40%), Gaps = 17/198 (8%)

Query: 251 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 310
            NL    +TD   V    L +++ +  ++  I  + +  +  L N+  L L+  ++  + 
Sbjct: 29  DNLKKKSVTD--AVTQNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNKL--TD 82

Query: 311 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 370
           ++ L+ L NL  + L    + D S  K       K  +L       + +  L  L  L  
Sbjct: 83  IKPLANLKNLGWLFLDENKVKDLSSLK----DLKKLKSLSLEHNGISDINGLVHLPQLES 138

Query: 371 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 430
           L L   +ITD         +  +   +       + +  +  L+ L  L LS+N +++D 
Sbjct: 139 LYLGNNKITD----ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN-HISD- 192

Query: 431 TLELISGLTGLVSLNVSN 448
            L  ++GL  L  L + +
Sbjct: 193 -LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 42/229 (18%), Positives = 68/229 (29%), Gaps = 43/229 (18%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110
           +  +  +L    VTD   +   + +++  +  N     S  G+++L    N+T L    N
Sbjct: 24  AETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQYL---PNVTKLFLNGN 78

Query: 111 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 170
                  +K  A L NL  L L+         +     +K  SL     + I        
Sbjct: 79  KL---TDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVH--- 132

Query: 171 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 230
                          +               L  L+   +    +  +  L  L      
Sbjct: 133 ---------LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL------ 177

Query: 231 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 279
                            L+ L L  N I+D  L  L GL NL+ L L S
Sbjct: 178 ---------------TKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 36/193 (18%), Positives = 67/193 (34%), Gaps = 20/193 (10%)

Query: 169 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 228
             + L       +  + VTD        L ++T L  +   + +  +D +  L +L  +N
Sbjct: 13  TDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 68

Query: 229 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 288
            +  QL+D    K        ++N                       N  +     + L 
Sbjct: 69  FSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 128

Query: 289 NLTGLCNLKCLELSDTQVGS--------------SGLRHLSGLTNLESINLSFTGISDGS 334
           NL  L          + +                + L+ L+ LT LE +++S   +SD  
Sbjct: 129 NLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD-- 186

Query: 335 LRKLAGLSSLKSL 347
           +  LA L++L+SL
Sbjct: 187 ISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 38/187 (20%), Positives = 67/187 (35%), Gaps = 42/187 (22%)

Query: 51  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110
           +  +   L  ++VTD   +   D   + +L  +    I    ++ +  L+NLT ++F  N
Sbjct: 18  AEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRL-GIKS--IDGVEYLNNLTQINFSNN 72

Query: 111 NA------------------------------------ITAQGMKAFAGLINLVKLDLER 134
                                                 +T    +           +L R
Sbjct: 73  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 132

Query: 135 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAY 193
                  + ++  L  L SL     +    +D+KPL+ LT L+ L IS +KV+D S +A 
Sbjct: 133 LELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 192

Query: 194 LKGLQKL 200
           L  L+ L
Sbjct: 193 LTNLESL 199

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 11/73 (15%)

Query: 225 FYLNLNRCQLSDDGCEKFSKI------GSLKVLNLGFNEITDECLVHL-----KGLTNLE 273
             L LN C LS  G               L+ L L +NEI  + +  L     + + +L 
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305

Query: 274 SLNLDSCGIGDEG 286
            L L+     +E 
Sbjct: 306 FLELNGNRFSEED 318

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 8/67 (11%)

Query: 247 SLKVLNLGFNEITDECLVH----LKGLTNLESLNLDSCGIGDEGLV----NLTGLCNLKC 298
           S++  +L  + IT E        L    +++ + L    IG E       N+    +L+ 
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 299 LELSDTQ 305
            E SD  
Sbjct: 64  AEFSDIF 70

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 8/110 (7%)

Query: 249 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQV 306
           +VL+L   ++T   L HL+ L  +  L+L    +      L  L  L  L+  + +   V
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 307 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 356
                        L +  L        +++ L     L  LNL    +  
Sbjct: 59  DGVANLPRLQELLLCNNRLQ----QSAAIQPLVSCPRLVLLNLQGNSLCQ 104

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	497
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.92
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.9
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.9
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.89
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.85
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.84
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.84
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.82
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.82
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.8
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.79
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.77
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.71
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.7
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.69
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.66
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.65
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.57
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.57
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.53
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.49
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.46
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.4
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.38
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.38
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.32
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.3
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.25
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.22
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.16
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.09
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.88
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.74
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.43
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.34
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.24
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.23
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.21
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.11
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	92.14

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=3.8e-23  Score=194.70  Aligned_cols=191  Identities=30%  Similarity=0.438  Sum_probs=98.2

Q ss_pred             hhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCC
Q 010952          242 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE  321 (497)
Q Consensus       242 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  321 (497)
                      +..+++++.++++++.+....+  ...+++|+.++++++.+....  .+..+++|+.++++++.+...            
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~------------  256 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNL------------  256 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCC------------
T ss_pred             cccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc--hhhcccccchhccccCccCCC------------
Confidence            3445555555555555443221  233455555555555443321  233444455555544443322            


Q ss_pred             EEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCC
Q 010952          322 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG  401 (497)
Q Consensus       322 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  401 (497)
                                  .  .+..+++|+.++++++.+...  ..+..++.++.+.+..|.+.+.  ..+..+++++.|++++|.
T Consensus       257 ------------~--~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~  318 (384)
T d2omza2         257 ------------A--PLSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNN  318 (384)
T ss_dssp             ------------G--GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSC
T ss_pred             ------------C--cccccccCCEeeccCcccCCC--Cccccccccccccccccccccc--cccchhcccCeEECCCCC
Confidence                        1  133344444444444444432  1234455555555555554432  224455666666666666


Q ss_pred             CChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccC
Q 010952          402 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC  473 (497)
Q Consensus       402 l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~  473 (497)
                      +.+..  .+..+++|++|++++| .+++.  ..++++++|++|++++|++++..  .+..+++|++|++++|
T Consensus       319 l~~l~--~l~~l~~L~~L~L~~n-~l~~l--~~l~~l~~L~~L~l~~N~l~~l~--~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         319 ISDIS--PVSSLTKLQRLFFANN-KVSDV--SSLANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSCCG--GGGGCTTCCEEECCSS-CCCCC--GGGGGCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCCE
T ss_pred             CCCCc--ccccCCCCCEEECCCC-CCCCC--hhHcCCCCCCEEECCCCcCCCCh--hhccCCCCCEeeCCCC
Confidence            65542  2455666666666666 55542  24566667777777766666543  2566677777777665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.90  E-value=8.6e-23  Score=192.26  Aligned_cols=337  Identities=27%  Similarity=0.324  Sum_probs=213.3

Q ss_pred             CCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEE
Q 010952          125 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN  204 (497)
Q Consensus       125 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  204 (497)
                      .+|++|+++++. +... ..+..+++|++|++++|. +++.  ..+.++++|++|++++|.+.+..  .++++++|+.++
T Consensus        44 ~~l~~L~l~~~~-I~~l-~gl~~L~nL~~L~Ls~N~-l~~l--~~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~  116 (384)
T d2omza2          44 DQVTTLQADRLG-IKSI-DGVEYLNNLTQINFSNNQ-LTDI--TPLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLT  116 (384)
T ss_dssp             TTCCEEECCSSC-CCCC-TTGGGCTTCCEEECCSSC-CCCC--GGGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEE
T ss_pred             CCCCEEECCCCC-CCCc-cccccCCCCCEEeCcCCc-CCCC--ccccCCccccccccccccccccc--cccccccccccc
Confidence            344555554432 2211 234445555555555532 3221  23555566666666655555322  255566666666


Q ss_pred             ccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCH
Q 010952          205 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD  284 (497)
Q Consensus       205 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~  284 (497)
                      ++++.+....  .......+.......+.+........................     ..+...+.........+....
T Consensus       117 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  189 (384)
T d2omza2         117 LFNNQITDID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL-----KPLANLTTLERLDISSNKVSD  189 (384)
T ss_dssp             CCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC-----GGGTTCTTCCEEECCSSCCCC
T ss_pred             cccccccccc--cccccccccccccccccccccccccccccccccccccccchh-----hhhcccccccccccccccccc
Confidence            6665554321  122333444444443332222111111111111111111111     113334444555555443322


Q ss_pred             hHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcC
Q 010952          285 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS  364 (497)
Q Consensus       285 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  364 (497)
                        ......+++++.+.++++.+....+  ...+++|+++++++|.+.+.  ..+..+++|+.+++.+|.+++..  .+..
T Consensus       190 --~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~  261 (384)
T d2omza2         190 --ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSG  261 (384)
T ss_dssp             --CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTT
T ss_pred             --ccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccc
Confidence              2334567889999998887766432  45678999999999987753  35678899999999999988743  4778


Q ss_pred             CCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEE
Q 010952          365 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL  444 (497)
Q Consensus       365 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L  444 (497)
                      +++|+.++++++.+.+..  .+..++.++.+.+..|.+.+.  ..+..+++++.|++++| ++++..  .+..+++|++|
T Consensus       262 ~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n-~l~~l~--~l~~l~~L~~L  334 (384)
T d2omza2         262 LTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFN-NISDIS--PVSSLTKLQRL  334 (384)
T ss_dssp             CTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSS-CCSCCG--GGGGCTTCCEE
T ss_pred             cccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCC-CCCCCc--ccccCCCCCEE
Confidence            999999999999987643  367889999999999998874  34677899999999999 888753  37899999999


Q ss_pred             EeeCCccChhHHHhhcCCcccceeecccCCCCHHHHHHHhhcCCCCCccCCC
Q 010952          445 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP  496 (497)
Q Consensus       445 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p~L~~l~~  496 (497)
                      ++++|++++.  ..+..+++|++|++++|++++..  .+  ..+++|+.|+.
T Consensus       335 ~L~~n~l~~l--~~l~~l~~L~~L~l~~N~l~~l~--~l--~~l~~L~~L~L  380 (384)
T d2omza2         335 FFANNKVSDV--SSLANLTNINWLSAGHNQISDLT--PL--ANLTRITQLGL  380 (384)
T ss_dssp             ECCSSCCCCC--GGGGGCTTCCEEECCSSCCCBCG--GG--TTCTTCSEEEC
T ss_pred             ECCCCCCCCC--hhHcCCCCCCEEECCCCcCCCCh--hh--ccCCCCCEeeC
Confidence            9999999874  36888999999999999998653  24  47889988764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.4e-21  Score=185.70  Aligned_cols=396  Identities=25%  Similarity=0.310  Sum_probs=234.0

Q ss_pred             CCcCEEEccCccccChhH-HHHhhCCCCCCEEEcCCCCCCChHH----HHHHhCCCCCCEEeccCcccccccccc----c
Q 010952           75 SNLQSLDFNFCIQISDGG-LEHLRGLSNLTSLSFRRNNAITAQG----MKAFAGLINLVKLDLERCTRIHGGLVN----L  145 (497)
Q Consensus        75 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~----~  145 (497)
                      ++|++|+++++ ++.+.. .+.+..++++++|+|++|. +++..    ...+..+++|++|++++|.........    +
T Consensus         2 ~~l~~ld~~~~-~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCCEEEeeCC-cCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            36888899776 666654 3446678888999999887 45433    445667888888888876422111111    1


Q ss_pred             c-CCCCCCEEeccCCCCCCcccc----ccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhh-
Q 010952          146 K-GLMKLESLNIKWCNCITDSDM----KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS-  219 (497)
Q Consensus       146 ~-~l~~L~~L~l~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-  219 (497)
                      . ...+|++|++++|. +++...    ..+..+++|++|++++|.+.+.....+.                    ..+. 
T Consensus        80 ~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~--------------------~~l~~  138 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLC--------------------EGLLD  138 (460)
T ss_dssp             CSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHH--------------------HHHTS
T ss_pred             hcCCCCCCEEECCCCC-ccccccccccchhhccccccccccccccchhhhhhhhh--------------------hcccc
Confidence            1 12346666665543 332221    2233445555555555544433322221                    0111 


Q ss_pred             CCCCCcEEEcCCCCCChhH----hHhhhcCCCCCEEEccCCCCChhHHH----Hh-hCCCCcCEEeCCCCCCCHhH----
Q 010952          220 ALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFNEITDECLV----HL-KGLTNLESLNLDSCGIGDEG----  286 (497)
Q Consensus       220 ~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~----~l-~~~~~L~~L~l~~~~l~~~~----  286 (497)
                      ...................    ...+.....++.++++++........    .+ ........+.+..+......    
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~  218 (460)
T d1z7xw1         139 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL  218 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred             cccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcc
Confidence            1122223333332222111    12233445566666655544322111    11 12234556666665443222    


Q ss_pred             HHHHhCCCCCCEeeccCcccchHH-----HHhhcCCCCCCEEeccCCCCChHHH----HHhcCCCCCcEEEcCCCCCCHh
Q 010952          287 LVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLTNLESINLSFTGISDGSL----RKLAGLSSLKSLNLDARQITDT  357 (497)
Q Consensus       287 ~~~l~~~~~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~  357 (497)
                      ...+...+.++.+.+..+......     .........++.+++++|.+.....    ..+...+.++.+++++|.+++.
T Consensus       219 ~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~  298 (460)
T d1z7xw1         219 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE  298 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred             cccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            123345667777777776654321     2233456678888888887764432    3345678888888888888765


Q ss_pred             HHHHhc-----CCCCCcEEEecCCCcChHHHHH----hhccCCCCeeeecCCCCChhhHHhhh-----hcCCCCeecccC
Q 010952          358 GLAALT-----SLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDAGVKHIK-----DLSSLTLLNLSQ  423 (497)
Q Consensus       358 ~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~l~~~~~~~~~-----~l~~L~~L~l~~  423 (497)
                      +...+.     ....|+.+++++|.++......    +..+++|++|++++|++++.+...+.     ..+.|++|+|++
T Consensus       299 ~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~  378 (460)
T d1z7xw1         299 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD  378 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCC
Confidence            554332     3467899999998877654433    35677899999999998876655442     246799999999


Q ss_pred             CCCCChhHH----HHhhcCCCCcEEEeeCCccChhHHHhh----c-CCcccceeecccCCCCHHHHHHHh--hcCCCCCc
Q 010952          424 NCNLTDKTL----ELISGLTGLVSLNVSNSRITSAGLRHL----K-PLKNLRSLTLESCKVTANDIKRLQ--SRDLPNLV  492 (497)
Q Consensus       424 ~~~l~~~~~----~~l~~~~~L~~L~l~~~~l~~~~~~~l----~-~~~~L~~L~l~~~~~~~~~~~~l~--~~~~p~L~  492 (497)
                      | .+++...    ..+..+++|++|++++|++++.+...+    . ....|+.|++.++.+++...+.+.  ....|+|+
T Consensus       379 n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~  457 (460)
T d1z7xw1         379 C-DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR  457 (460)
T ss_dssp             S-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSE
T ss_pred             C-CCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCE
Confidence            9 8887543    456678999999999999987665544    2 344799999999999987777663  35667776


Q ss_pred             cC
Q 010952          493 SF  494 (497)
Q Consensus       493 ~l  494 (497)
                      .+
T Consensus       458 ~~  459 (460)
T d1z7xw1         458 VI  459 (460)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.6e-20  Score=179.43  Aligned_cols=394  Identities=23%  Similarity=0.281  Sum_probs=208.5

Q ss_pred             CceeEEEeeCCCCChHHHHH-hcCCCCcCEEEccCccccChhHH----HHhhCCCCCCEEEcCCCCCCChHHHHHHh---
Q 010952           51 SSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAITAQGMKAFA---  122 (497)
Q Consensus        51 ~~l~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~l~---  122 (497)
                      .+|+.|+++++.+++..... ++.++++++|++++| .++....    .++..+++|++|++++|. +++.....+.   
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTT
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHH
Confidence            47899999999998766444 688999999999999 5765443    445788999999999987 4544444443   


Q ss_pred             --CCCCCCEEeccCccccccc----cccccCCCCCCEEeccCCCCCCcccccccc-----CCCCCCEEEeeccccCchh-
Q 010952          123 --GLINLVKLDLERCTRIHGG----LVNLKGLMKLESLNIKWCNCITDSDMKPLS-----GLTNLKSLQISCSKVTDSG-  190 (497)
Q Consensus       123 --~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~-  190 (497)
                        ...+|++|++++|......    ...+..+++|++|++++|. +.+.....+.     ..............+.... 
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~-i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  158 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  158 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhcccccccccccccc-chhhhhhhhhhcccccccccccccccccccchhhh
Confidence              2357999999998532222    2456788999999999854 3332222221     1122333333333332221 


Q ss_pred             ---HHhhhcCCCCcEEEccCCCCChHHHH----Hh-hCCCCCcEEEcCCCCCChhHh----HhhhcCCCCCEEEccCCCC
Q 010952          191 ---IAYLKGLQKLTLLNLEGCPVTAACLD----SL-SALGSLFYLNLNRCQLSDDGC----EKFSKIGSLKVLNLGFNEI  258 (497)
Q Consensus       191 ---~~~l~~l~~L~~L~l~~~~~~~~~~~----~l-~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~  258 (497)
                         ...+.....++.+.++++........    .+ ........+.+.++.......    ..+...+.++.+++..+..
T Consensus       159 ~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~  238 (460)
T d1z7xw1         159 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL  238 (460)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccc
Confidence               23345566777777777765432211    11 122345566666655443221    2234456666666666554


Q ss_pred             ChhH-----HHHhhCCCCcCEEeCCCCCCCHhHHH----HHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCC
Q 010952          259 TDEC-----LVHLKGLTNLESLNLDSCGIGDEGLV----NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG  329 (497)
Q Consensus       259 ~~~~-----~~~l~~~~~L~~L~l~~~~l~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  329 (497)
                      ....     .........++.+++++|.+......    .+...+.++.++++++.++......+.              
T Consensus       239 ~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~--------------  304 (460)
T d1z7xw1         239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC--------------  304 (460)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH--------------
T ss_pred             cccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhh--------------
Confidence            3221     11222345566666666655443221    223345555555555554433222211              


Q ss_pred             CChHHHHHh-cCCCCCcEEEcCCCCCCHhHHHHh----cCCCCCcEEEecCCCcChHHHHHh-----hccCCCCeeeecC
Q 010952          330 ISDGSLRKL-AGLSSLKSLNLDARQITDTGLAAL----TSLTGLTHLDLFGARITDSGAAYL-----RNFKNLRSLEICG  399 (497)
Q Consensus       330 ~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~  399 (497)
                            ..+ .....|+.+.++++.++..+...+    ...++|++|++++|.+++.+...+     ...+.|++|++++
T Consensus       305 ------~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~  378 (460)
T d1z7xw1         305 ------ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD  378 (460)
T ss_dssp             ------HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ------ccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCC
Confidence                  000 112344444444444443332222    233455555555555544332222     1234455566665


Q ss_pred             CCCChhhHHh----hhhcCCCCeecccCCCCCChhHHHHhh-----cCCCCcEEEeeCCccChhHHHhh----cCCcccc
Q 010952          400 GGLTDAGVKH----IKDLSSLTLLNLSQNCNLTDKTLELIS-----GLTGLVSLNVSNSRITSAGLRHL----KPLKNLR  466 (497)
Q Consensus       400 ~~l~~~~~~~----~~~l~~L~~L~l~~~~~l~~~~~~~l~-----~~~~L~~L~l~~~~l~~~~~~~l----~~~~~L~  466 (497)
                      |++++.+...    +..+++|++|+|++| .+++.....+.     +...|+.|++.++.+.+...+.+    ...|+|+
T Consensus       379 n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~  457 (460)
T d1z7xw1         379 CDVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR  457 (460)
T ss_dssp             SCCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSE
T ss_pred             CCCChHHHHHHHHHHhcCCCCCEEECCCC-cCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCE
Confidence            5555543322    233466666666666 55554433332     22356777777776665444333    3455665


Q ss_pred             ee
Q 010952          467 SL  468 (497)
Q Consensus       467 ~L  468 (497)
                      .|
T Consensus       458 ~~  459 (460)
T d1z7xw1         458 VI  459 (460)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.85  E-value=2e-23  Score=190.32  Aligned_cols=260  Identities=17%  Similarity=0.129  Sum_probs=167.4

Q ss_pred             hHHHHHHhc---CCceeEEEeeCCCCCh--HHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCCh
Q 010952           41 KWMDVIASQ---GSSLLSVDLSGSDVTD--SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA  115 (497)
Q Consensus        41 ~~~~~~~~~---~~~l~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  115 (497)
                      .|.++.|..   ..+++.|+|+++++.+  ..|..++++++|++|++++|+.+.+..|..|+++++|++|++++|. +..
T Consensus        37 ~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~-l~~  115 (313)
T d1ogqa_          37 TWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSG  115 (313)
T ss_dssp             CSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEE
T ss_pred             cCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccc-ccc
Confidence            387776643   2379999999988765  4677899999999999988656766667788899999999999887 455


Q ss_pred             HHHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCC-CEEEeeccccCchhHHhh
Q 010952          116 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL-KSLQISCSKVTDSGIAYL  194 (497)
Q Consensus       116 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~~~~~~l  194 (497)
                      ..+..+..+++|++++++.|......+..+.+++.+++++++++. +....+..+..+..+ +.+.+..+.++...+..+
T Consensus       116 ~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~-l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~  194 (313)
T d1ogqa_         116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF  194 (313)
T ss_dssp             ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred             cccccccchhhhcccccccccccccCchhhccCcccceeeccccc-cccccccccccccccccccccccccccccccccc
Confidence            556667788888888888876666666777788888888887743 333445556555554 666677776666555555


Q ss_pred             hcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCE
Q 010952          195 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES  274 (497)
Q Consensus       195 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  274 (497)
                      ..+..+ .+++..+...+..+..+..+++++.+++.++.+....+ .++.+++++.|++++|++.+..|..+.++++|+.
T Consensus       195 ~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~  272 (313)
T d1ogqa_         195 ANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS  272 (313)
T ss_dssp             GGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred             cccccc-cccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCE
Confidence            554433 46666665544445555556666666666665544322 3445556666666666555444445555555666


Q ss_pred             EeCCCCCCCHhHHHHHhCCCCCCEeeccCcc
Q 010952          275 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ  305 (497)
Q Consensus       275 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~  305 (497)
                      |++++|++.+..| .+..+.+|+.+++.+|+
T Consensus       273 L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         273 LNVSFNNLCGEIP-QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             EECCSSEEEEECC-CSTTGGGSCGGGTCSSS
T ss_pred             EECcCCcccccCC-CcccCCCCCHHHhCCCc
Confidence            6665555443222 12334444444454443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.84  E-value=3.5e-23  Score=188.69  Aligned_cols=249  Identities=16%  Similarity=0.187  Sum_probs=150.4

Q ss_pred             CCcEEEccCCCCCh--HHHHHhhCCCCCcEEEcCC-CCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEE
Q 010952          199 KLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL  275 (497)
Q Consensus       199 ~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  275 (497)
                      .++.|+++++.+.+  .+|..++++++|++|++++ |.+.+..|..++++++|++|++++|.+....+..+..++.|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            57788888887764  3566778888888888875 55655566677777788888887777665555555666667777


Q ss_pred             eCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCC
Q 010952          276 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT  355 (497)
Q Consensus       276 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  355 (497)
                      +++.|.+....+..+..+++++.+++++|.+....+..+..+..+                       ++.+.+++|+++
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l-----------------------~~~l~~~~n~l~  187 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL-----------------------FTSMTISRNRLT  187 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTT-----------------------CCEEECCSSEEE
T ss_pred             ccccccccccCchhhccCcccceeecccccccccccccccccccc-----------------------cccccccccccc
Confidence            776664443334445555566666666555544333334333332                       144444444443


Q ss_pred             HhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHh
Q 010952          356 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI  435 (497)
Q Consensus       356 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l  435 (497)
                      ...+..+..+. ...+++..+...+..+..+..+++++.+++.++.+.+.. ..+..+++|+.|++++| ++++.+|..+
T Consensus       188 ~~~~~~~~~l~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N-~l~g~iP~~l  264 (313)
T d1ogqa_         188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNN-RIYGTLPQGL  264 (313)
T ss_dssp             EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSS-CCEECCCGGG
T ss_pred             ccccccccccc-ccccccccccccccccccccccccccccccccccccccc-cccccccccccccCccC-eecccCChHH
Confidence            33233333332 234555555554444455555666666666666665542 24455667777777777 6666666667


Q ss_pred             hcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCC
Q 010952          436 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK  474 (497)
Q Consensus       436 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~  474 (497)
                      +++++|++|++++|++++.+| .+..+++|+.+++++|+
T Consensus       265 ~~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         265 TQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             GGCTTCCEEECCSSEEEEECC-CSTTGGGSCGGGTCSSS
T ss_pred             hCCCCCCEEECcCCcccccCC-CcccCCCCCHHHhCCCc
Confidence            777777777777777765443 34566777777777775

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=2.6e-21  Score=175.56  Aligned_cols=250  Identities=22%  Similarity=0.222  Sum_probs=141.1

Q ss_pred             CCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeC
Q 010952          198 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL  277 (497)
Q Consensus       198 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  277 (497)
                      +.+++|++++|+++...+.+|.++++|++|++++|.+....+..|..+++|+.+++++|.+.....   ...+.++.+.+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~---~~~~~l~~L~~  107 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE---KMPKTLQELRV  107 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS---SCCTTCCEEEC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCcc---chhhhhhhhhc
Confidence            467777777777766444567777777777777777776666667777777777777776653221   22345666666


Q ss_pred             CCCCCCHhHHHHHhCCCCCCEeeccCcccchH--HHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCC
Q 010952          278 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS--GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT  355 (497)
Q Consensus       278 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  355 (497)
                      ..+.+.......+.....+..+....+.....  ....+..+++|+.+++.++                        .+.
T Consensus       108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n------------------------~l~  163 (305)
T d1xkua_         108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT------------------------NIT  163 (305)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS------------------------CCC
T ss_pred             cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccC------------------------Ccc
Confidence            66665554444455555555555554432211  1222334444555555444                        433


Q ss_pred             HhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHh
Q 010952          356 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI  435 (497)
Q Consensus       356 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l  435 (497)
                      ...   ...+++|+.|++.+|......+..+..++.++.|++++|.+....+..+..+++|++|++++| +++.. +..+
T Consensus       164 ~l~---~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~l-p~~l  238 (305)
T d1xkua_         164 TIP---QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKV-PGGL  238 (305)
T ss_dssp             SCC---SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSC-CTTT
T ss_pred             ccC---cccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccc-ccccc-cccc
Confidence            211   112345555555555555444444555556666666666665555555555666666666666 55542 3455


Q ss_pred             hcCCCCcEEEeeCCccChhHHHhh------cCCcccceeecccCCCCHHH
Q 010952          436 SGLTGLVSLNVSNSRITSAGLRHL------KPLKNLRSLTLESCKVTAND  479 (497)
Q Consensus       436 ~~~~~L~~L~l~~~~l~~~~~~~l------~~~~~L~~L~l~~~~~~~~~  479 (497)
                      ..+++|+.|++++|+++......|      ...++|+.|++++|++....
T Consensus       239 ~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~  288 (305)
T d1xkua_         239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE  288 (305)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred             ccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCc
Confidence            566666666666666554332222      23456667777777665443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.82  E-value=2.8e-20  Score=168.61  Aligned_cols=225  Identities=19%  Similarity=0.215  Sum_probs=160.8

Q ss_pred             CCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEc
Q 010952          174 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL  253 (497)
Q Consensus       174 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  253 (497)
                      +.+++|++++|.++......+.++++|++|+++++.+....+..|..+++|+.|++++|.+.....   ...+.+..+++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~---~~~~~l~~L~~  107 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE---KMPKTLQELRV  107 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS---SCCTTCCEEEC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCcc---chhhhhhhhhc
Confidence            689999999999997777789999999999999999988767789999999999999998875432   23468899999


Q ss_pred             cCCCCChhHHHHhhCCCCcCEEeCCCCCCCH--hHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCC
Q 010952          254 GFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS  331 (497)
Q Consensus       254 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  331 (497)
                      ..+.+.......+........+....+....  .....+..+++|+.+++.++.+....   ...+++|++|++.++...
T Consensus       108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~---~~~~~~L~~L~l~~n~~~  184 (305)
T d1xkua_         108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP---QGLPPSLTELHLDGNKIT  184 (305)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC---SSCCTTCSEEECTTSCCC
T ss_pred             cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccC---cccCCccCEEECCCCcCC
Confidence            9998887666667778888889888764432  22345677899999999998765431   123567777777777666


Q ss_pred             hHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChh
Q 010952          332 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA  405 (497)
Q Consensus       332 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~  405 (497)
                      ...+..+.+++.++.|.+++|.++......+..+++|++|++++|+++.. |..+..+++|+.|++++|+|+.+
T Consensus       185 ~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p~~l~~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCC
T ss_pred             CCChhHhhccccccccccccccccccccccccccccceeeeccccccccc-ccccccccCCCEEECCCCccCcc
Confidence            55555556666666666666666555444555556666666666655543 33445555555555555555543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4e-19  Score=158.35  Aligned_cols=223  Identities=22%  Similarity=0.227  Sum_probs=112.3

Q ss_pred             cEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHH-HHHhCCCCCCEeeccC
Q 010952          225 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSD  303 (497)
Q Consensus       225 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~  303 (497)
                      +.+++++..+.......+.. ..+..+.+......... .......+|++|+++++.+..... ..+..+++|++|++.+
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            45677766654333322211 12334444333222110 111233466666666665554332 3344566666666666


Q ss_pred             cccchHHHHhhcCCCCCCEEeccCC-CCChHHHHHh-cCCCCCcEEEcCCC-CCCHhHHH-Hhc-CCCCCcEEEecCC--
Q 010952          304 TQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKL-AGLSSLKSLNLDAR-QITDTGLA-ALT-SLTGLTHLDLFGA--  376 (497)
Q Consensus       304 ~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l-~~~~~L~~L~l~~~-~~~~~~~~-~~~-~~~~L~~L~l~~~--  376 (497)
                      +.+++.....++.+++|++|++++| .+++.....+ ..+++|++|++++| .+++.+.. .+. .+++|+.|+++++  
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  160 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence            6665555555666666666666664 4554443332 34566666666654 34443321 121 3455666666654  


Q ss_pred             CcChHHHHH-hhccCCCCeeeecCC-CCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCC
Q 010952          377 RITDSGAAY-LRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS  449 (497)
Q Consensus       377 ~~~~~~~~~-l~~~~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~  449 (497)
                      .+++..... ...+|+|++|++++| .+++..+..+.++++|++|++++|..+++..+..++++++|+.|++++|
T Consensus       161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            233332222 244566666666554 3555555555555666666666655555555555555566666666555

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.7e-21  Score=172.38  Aligned_cols=202  Identities=24%  Similarity=0.307  Sum_probs=92.0

Q ss_pred             CCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccC-CCCChhHHHHhhCCCCcCEEeC
Q 010952          199 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL  277 (497)
Q Consensus       199 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l  277 (497)
                      .+++|++++|.++...+.+|.++++|++|+++++.+.......+..++.++.+.... +.+....+..+.++++|+.|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            456666666666554444555666666666666655554444444455555554432 2233222333444555555555


Q ss_pred             CCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHh
Q 010952          278 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT  357 (497)
Q Consensus       278 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  357 (497)
                      +.+.+.......+....+|+.+++.+|.+.......+..+++|+                        .|++.+|.++..
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~------------------------~L~l~~N~l~~l  168 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT------------------------HLFLHGNRISSV  168 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC------------------------EEECCSSCCCEE
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchh------------------------hcccccCccccc
Confidence            55444333233333344444444444444333233333334444                        444444444333


Q ss_pred             HHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952          358 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  424 (497)
Q Consensus       358 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  424 (497)
                      .+..+..+++|+.+++++|++++..+..+..+++|+.|++++|.+....+..++.+++|++|++++|
T Consensus       169 ~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             chhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCC
Confidence            3333334444444444444444433344444444444444444444444444444444444444444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.7e-20  Score=166.70  Aligned_cols=206  Identities=25%  Similarity=0.300  Sum_probs=148.4

Q ss_pred             CCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccC-cccchHHHHhhcCCCCCCEEe
Q 010952          246 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESIN  324 (497)
Q Consensus       246 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~  324 (497)
                      +.+++|++++|.++...+..+.++++|+.++++++.+.......+.....++.+.... +.+....+..+..+++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            4678888888888766555677888888888888877766666666677777776543 334444455567777888888


Q ss_pred             ccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCCh
Q 010952          325 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD  404 (497)
Q Consensus       325 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~  404 (497)
                      +++|.+.......+...++|+.+++.+|.++......+..+++|+.|++++|.+....+.++..+++|+.+++++|.+++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            88776655445556667777888887777776555566677777778777777776666666777777777777777777


Q ss_pred             hhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccC
Q 010952          405 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  452 (497)
Q Consensus       405 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~  452 (497)
                      ..+..+..+++|++|++++| .+....+..+..+++|++|++++|++.
T Consensus       192 i~~~~f~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cChhHhhhhhhccccccccc-ccccccccccccccccCEEEecCCCCC
Confidence            76677777777777777777 677766777777777777777777655

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2e-17  Score=147.24  Aligned_cols=180  Identities=19%  Similarity=0.251  Sum_probs=99.5

Q ss_pred             CCCCCEEEccCCCCChhH-HHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCc-ccchHHHHh-hcCCCCCC
Q 010952          245 IGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRH-LSGLTNLE  321 (497)
Q Consensus       245 l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~-l~~~~~L~  321 (497)
                      ..+|+.|+++++.+.... ...+..+++|++|.+.+|.+.+.....++.+++|++|+++++ .+++..... ...+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            345666666666555432 233455666666666666666555555666666666666664 344332222 23456666


Q ss_pred             EEeccCC-CCChHHH-HHhc-CCCCCcEEEcCCC--CCCHhHHHHh-cCCCCCcEEEecCCC-cChHHHHHhhccCCCCe
Q 010952          322 SINLSFT-GISDGSL-RKLA-GLSSLKSLNLDAR--QITDTGLAAL-TSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRS  394 (497)
Q Consensus       322 ~L~l~~~-~~~~~~~-~~l~-~~~~L~~L~l~~~--~~~~~~~~~~-~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~  394 (497)
                      +|++++| .+++... ..+. ..++|+.|++.++  .+++.+...+ ..+|+|++|++++|. +++.....+..+++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            6666665 3443332 2222 2456666666653  3444443332 346666666666653 55555555556666666


Q ss_pred             eeecCC-CCChhhHHhhhhcCCCCeecccCC
Q 010952          395 LEICGG-GLTDAGVKHIKDLSSLTLLNLSQN  424 (497)
Q Consensus       395 L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~~  424 (497)
                      |++++| .+++.+...++++++|+.|++++|
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            666664 455555555566666666666665

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.1e-18  Score=152.44  Aligned_cols=199  Identities=20%  Similarity=0.150  Sum_probs=117.0

Q ss_pred             CCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEec
Q 010952          246 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL  325 (497)
Q Consensus       246 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  325 (497)
                      ..+...+.+++.++.. |..+  .++++.|++++|.+....+..+..+++|++|++++|.++..  ..++.+++|++|++
T Consensus        10 ~~~~~v~C~~~~L~~i-P~~l--p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l--~~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCSSC-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE--ECCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCCee-CcCc--CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc--cccccccccccccc
Confidence            3444556666665532 2222  14677777777777666556666777777777777766542  22345667777777


Q ss_pred             cCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChh
Q 010952          326 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA  405 (497)
Q Consensus       326 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~  405 (497)
                      ++|.+... +..+.++++|+.|+++++.+.......+..+++++.|++.+|.+....+..+..+++++.+++++|+++..
T Consensus        85 s~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          85 SHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             CSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             cccccccc-ccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence            77665432 23345566666666666655554444445566666666666666555444455566666666666666655


Q ss_pred             hHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccC
Q 010952          406 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  452 (497)
Q Consensus       406 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~  452 (497)
                      .+..+..+++|++|+|++| +++. +|+.+..+++|+.|++++|++.
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N-~L~~-lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQEN-SLYT-IPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCCCSEEECCSCCBC
T ss_pred             CccccccccccceeecccC-CCcc-cChhHCCCCCCCEEEecCCCCC
Confidence            5555555666666666666 5553 3444555566666666666543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.1e-17  Score=145.92  Aligned_cols=199  Identities=22%  Similarity=0.141  Sum_probs=127.3

Q ss_pred             CCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCE
Q 010952           50 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  129 (497)
Q Consensus        50 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  129 (497)
                      ...+.+++-++.+++ .+|..++  +++++|++++| .+....+.+|.++++|++|++++|.. +..  +.++.+++|++
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N~l-~~l--~~~~~l~~L~~   81 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAEL-TKL--QVDGTLPVLGT   81 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCC-CEE--ECCSCCTTCCE
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCC-cCCCcCHHHhhccccccccccccccc-ccc--ccccccccccc
Confidence            345566777777765 3443332  47888888887 67666667788888888888888864 322  23466777888


Q ss_pred             EeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCC
Q 010952          130 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP  209 (497)
Q Consensus       130 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  209 (497)
                      |++++| .+...+..+..+++|+.|+++++. ........+..+.++++|.+.++.+....+..+..++.++.+++++|+
T Consensus        82 L~Ls~N-~l~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          82 LDLSHN-QLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             EECCSS-CCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             cccccc-cccccccccccccccccccccccc-cceeeccccccccccccccccccccceeccccccccccchhccccccc
Confidence            888775 355555566777777777777643 333344555566777777777776665555556666667777777776


Q ss_pred             CChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCC
Q 010952          210 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI  258 (497)
Q Consensus       210 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  258 (497)
                      ++...+..+..+++|++|++++|.+.. .+..+..+++|+.|++++|..
T Consensus       160 l~~~~~~~~~~l~~L~~L~Ls~N~L~~-lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         160 LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCB
T ss_pred             ccccCccccccccccceeecccCCCcc-cChhHCCCCCCCEEEecCCCC
Confidence            665555556666666666666666653 333444556666666666543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.69  E-value=1.4e-15  Score=139.62  Aligned_cols=249  Identities=16%  Similarity=0.190  Sum_probs=132.1

Q ss_pred             HhhCCCCCcEEEcCCCCCChhHhHhh----hcCCCCCEEEccCCCCCh----------hHHHHhhCCCCcCEEeCCCCCC
Q 010952          217 SLSALGSLFYLNLNRCQLSDDGCEKF----SKIGSLKVLNLGFNEITD----------ECLVHLKGLTNLESLNLDSCGI  282 (497)
Q Consensus       217 ~l~~l~~L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~~~~~~----------~~~~~l~~~~~L~~L~l~~~~l  282 (497)
                      .+.....++.|++++|.+.......+    ...++|+.++++++....          .....+..+++|+.|++++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            44556777777777776665444333    345677777776543221          1112234456666666666655


Q ss_pred             CHhHH----HHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhH
Q 010952          283 GDEGL----VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG  358 (497)
Q Consensus       283 ~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  358 (497)
                      .....    ..+...++|++|++++|.++......++..  +..         ..........+.|+.+.++++.++..+
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~--l~~---------~~~~~~~~~~~~L~~l~l~~n~i~~~~  174 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--LQE---------LAVNKKAKNAPPLRSIICGRNRLENGS  174 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--HHH---------HHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred             ccccccchhhhhcccccchheeccccccccccccccccc--ccc---------cccccccccCcccceeecccccccccc
Confidence            44322    222344556666665555433221111000  000         000001123455666666666555433


Q ss_pred             HH----HhcCCCCCcEEEecCCCcChHHH-----HHhhccCCCCeeeecCCCCChhhHH----hhhhcCCCCeecccCCC
Q 010952          359 LA----ALTSLTGLTHLDLFGARITDSGA-----AYLRNFKNLRSLEICGGGLTDAGVK----HIKDLSSLTLLNLSQNC  425 (497)
Q Consensus       359 ~~----~~~~~~~L~~L~l~~~~~~~~~~-----~~l~~~~~L~~L~l~~~~l~~~~~~----~~~~l~~L~~L~l~~~~  425 (497)
                      ..    .+..+++|+.|++++|.+.....     ..+..+++|+.|++++|.++..+..    .+..+++|++|++++| 
T Consensus       175 ~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n-  253 (344)
T d2ca6a1         175 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC-  253 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC-
T ss_pred             cccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcC-
Confidence            32    23345666666666666654322     1234566677777777766554432    2345677777777777 


Q ss_pred             CCChhHHHHh----hc--CCCCcEEEeeCCccChhHHHh----hc-CCcccceeecccCCCCH
Q 010952          426 NLTDKTLELI----SG--LTGLVSLNVSNSRITSAGLRH----LK-PLKNLRSLTLESCKVTA  477 (497)
Q Consensus       426 ~l~~~~~~~l----~~--~~~L~~L~l~~~~l~~~~~~~----l~-~~~~L~~L~l~~~~~~~  477 (497)
                      .+++.....+    ..  .+.|+.|++++|+++......    +. .+++|+.|++++|.+++
T Consensus       254 ~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            6666544433    22  356788888888777654333    32 46778888888887754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.66  E-value=1.3e-14  Score=133.18  Aligned_cols=248  Identities=18%  Similarity=0.214  Sum_probs=120.5

Q ss_pred             cccCCCCCCEEEeeccccCchhHHhh----hcCCCCcEEEccCCCCC---h-------HHHHHhhCCCCCcEEEcCCCCC
Q 010952          169 PLSGLTNLKSLQISCSKVTDSGIAYL----KGLQKLTLLNLEGCPVT---A-------ACLDSLSALGSLFYLNLNRCQL  234 (497)
Q Consensus       169 ~l~~l~~L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~~~~~---~-------~~~~~l~~l~~L~~L~l~~~~~  234 (497)
                      .+.+...|++|++++|.+.+.....+    ...+.|+.++++++...   .       .+...+..+++|+.|++++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            34445666666666666655444333    34456666666654321   0       1122334455566666665555


Q ss_pred             ChhHh----HhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCH-hHHHHHhCCCCCCEeeccCcccchH
Q 010952          235 SDDGC----EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSS  309 (497)
Q Consensus       235 ~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~~L~l~~~~~~~~  309 (497)
                      .....    ..+...++|+.|++++|.+.......+...            +.. .........+.|+.+.++++.+...
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~------------l~~~~~~~~~~~~~~L~~l~l~~n~i~~~  173 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA------------LQELAVNKKAKNAPPLRSIICGRNRLENG  173 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH------------HHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             ccccccchhhhhcccccchheeccccccccccccccccc------------ccccccccccccCcccceeeccccccccc
Confidence            43222    222344555555555554432111111000            000 0000012334555555555544332


Q ss_pred             H----HHhhcCCCCCCEEeccCCCCChHHH-----HHhcCCCCCcEEEcCCCCCCHhHH----HHhcCCCCCcEEEecCC
Q 010952          310 G----LRHLSGLTNLESINLSFTGISDGSL-----RKLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGA  376 (497)
Q Consensus       310 ~----~~~l~~~~~L~~L~l~~~~~~~~~~-----~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~  376 (497)
                      .    ...+..++.|+.+++++|.++....     ..+..+++|+.|++++|.++..+.    ..+..+++|++|++++|
T Consensus       174 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         174 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             ccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcC
Confidence            1    2223345556666666665554322     123345666666666666655433    23345666777777777


Q ss_pred             CcChHHHHHh----h--ccCCCCeeeecCCCCChhhHHhhh-----hcCCCCeecccCCCCCCh
Q 010952          377 RITDSGAAYL----R--NFKNLRSLEICGGGLTDAGVKHIK-----DLSSLTLLNLSQNCNLTD  429 (497)
Q Consensus       377 ~~~~~~~~~l----~--~~~~L~~L~l~~~~l~~~~~~~~~-----~l~~L~~L~l~~~~~l~~  429 (497)
                      .+++.+...+    .  ..+.|++|++++|.++..+...+.     ++++|+.|+|++| .+.+
T Consensus       254 ~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N-~~~~  316 (344)
T d2ca6a1         254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSE  316 (344)
T ss_dssp             CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCT
T ss_pred             ccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCC-cCCC
Confidence            6666544433    2  235677777777777665443332     3567777777777 5543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=3.1e-16  Score=134.83  Aligned_cols=188  Identities=29%  Similarity=0.371  Sum_probs=94.9

Q ss_pred             hcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCE
Q 010952          243 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES  322 (497)
Q Consensus       243 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  322 (497)
                      +.+.+|+.|++.++.+...  ..+..+++|+.|++++|.+....+  +..++++++++++++.++..  ..         
T Consensus        38 ~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i--~~---------  102 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SA---------  102 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GG---------
T ss_pred             HHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc--cc---------
Confidence            3445555555555555432  224455555555555554443221  34444555555544443321  12         


Q ss_pred             EeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCC
Q 010952          323 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL  402 (497)
Q Consensus       323 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l  402 (497)
                                     +.++++|+.+.++++.....  ..+...+.++.+.++.+.+...  ..+..+++|+.|++++|.+
T Consensus       103 ---------------l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~  163 (227)
T d1h6ua2         103 ---------------IAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQV  163 (227)
T ss_dssp             ---------------GTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCC
T ss_pred             ---------------cccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhcccccccccccccccc
Confidence                           33445555555554443331  2233445555555555544432  1234555666666666655


Q ss_pred             ChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecc
Q 010952          403 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE  471 (497)
Q Consensus       403 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~  471 (497)
                      .+..  .+..+++|++|++++| ++++.  ..++++++|++|++++|++++..  .+..+++|+.|+++
T Consensus       164 ~~~~--~l~~l~~L~~L~Ls~n-~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         164 SDLT--PLANLSKLTTLKADDN-KISDI--SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             CCCG--GGTTCTTCCEEECCSS-CCCCC--GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             ccch--hhcccccceecccCCC-ccCCC--hhhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            5432  2455566666666666 55542  22556666666666666666532  35566666666665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=6.7e-16  Score=132.72  Aligned_cols=201  Identities=25%  Similarity=0.379  Sum_probs=124.4

Q ss_pred             EccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCC
Q 010952          204 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG  283 (497)
Q Consensus       204 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~  283 (497)
                      ++..+.+++..  .++.+.+|+.|++.+|.+.+.  +.+..+++|+.|++++|.+....  .+..+++++.+.++++.++
T Consensus        25 ~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~   98 (227)
T d1h6ua2          25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK   98 (227)
T ss_dssp             HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS
T ss_pred             HhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccc
Confidence            34444444322  335667899999999998764  46889999999999999988643  3788999999999998776


Q ss_pred             HhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhc
Q 010952          284 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT  363 (497)
Q Consensus       284 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  363 (497)
                      ...  .+..+++|+.+.++++.....  ..+...+.++.+.+.++.+....  .+.+.++|+.|.+.+|.+...  ..++
T Consensus        99 ~i~--~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--~~l~  170 (227)
T d1h6ua2          99 NVS--AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL--TPLA  170 (227)
T ss_dssp             CCG--GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGT
T ss_pred             ccc--ccccccccccccccccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccc--hhhc
Confidence            432  467788999999988765432  23445566666666665543221  233445555555555544432  1233


Q ss_pred             CCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcE
Q 010952          364 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS  443 (497)
Q Consensus       364 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~  443 (497)
                      .                        +++|++|++++|.+++..  .+..+++|++|+|++| ++++..  .+.++++|+.
T Consensus       171 ~------------------------l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N-~lt~i~--~l~~l~~L~~  221 (227)
T d1h6ua2         171 N------------------------LSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNN-QISDVS--PLANTSNLFI  221 (227)
T ss_dssp             T------------------------CTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTS-CCCBCG--GGTTCTTCCE
T ss_pred             c------------------------cccceecccCCCccCCCh--hhcCCCCCCEEECcCC-cCCCCc--ccccCCCCCE
Confidence            4                        445555555555444431  2444555555666555 455432  2555566666


Q ss_pred             EEee
Q 010952          444 LNVS  447 (497)
Q Consensus       444 L~l~  447 (497)
                      |+++
T Consensus       222 L~ls  225 (227)
T d1h6ua2         222 VTLT  225 (227)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            6654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=7.8e-15  Score=123.95  Aligned_cols=163  Identities=29%  Similarity=0.367  Sum_probs=95.0

Q ss_pred             CCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEec
Q 010952          295 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF  374 (497)
Q Consensus       295 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  374 (497)
                      ++++|++.++.+...  ..+..+++|++|++++|.+++..  .+..+++|+.|++++|++++.  ..+..+++|+.|+++
T Consensus        47 ~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccc--ccccccccccccccc
Confidence            455555555544332  12444555666666665554422  244556666666666666542  235556666666666


Q ss_pred             CCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChh
Q 010952          375 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA  454 (497)
Q Consensus       375 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~  454 (497)
                      +|.+...  ..+..+++++.+++++|.+++..  .+..+++|+++++++| .+++..  .++++++|+.|++++|++++.
T Consensus       121 ~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~~--~~~~l~~L~~l~l~~n-~l~~i~--~l~~l~~L~~L~Ls~N~i~~l  193 (210)
T d1h6ta2         121 HNGISDI--NGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDN-QISDIV--PLAGLTKLQNLYLSKNHISDL  193 (210)
T ss_dssp             TSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSS-CCCCCG--GGTTCTTCCEEECCSSCCCBC
T ss_pred             ccccccc--ccccccccccccccccccccccc--cccccccccccccccc-cccccc--cccCCCCCCEEECCCCCCCCC
Confidence            6655442  23455666777777766665432  3455677777777777 565532  366677777777777776653


Q ss_pred             HHHhhcCCcccceeeccc
Q 010952          455 GLRHLKPLKNLRSLTLES  472 (497)
Q Consensus       455 ~~~~l~~~~~L~~L~l~~  472 (497)
                        ..+..+++|+.|++++
T Consensus       194 --~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         194 --RALAGLKNLDVLELFS  209 (210)
T ss_dssp             --GGGTTCTTCSEEEEEE
T ss_pred             --hhhcCCCCCCEEEccC
Confidence              3466777777777653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=5.8e-15  Score=123.69  Aligned_cols=139  Identities=36%  Similarity=0.511  Sum_probs=57.8

Q ss_pred             CCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCee
Q 010952          316 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL  395 (497)
Q Consensus       316 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  395 (497)
                      .+++|++|++++|.+++..  .+.++++|+.|++++|.+...  ..+..+++|+.+++++|.....  ..+..+++|+.|
T Consensus        60 ~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L  133 (199)
T d2omxa2          60 YLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRL  133 (199)
T ss_dssp             GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             cCCCcCcCccccccccCcc--cccCCcccccccccccccccc--cccccccccccccccccccccc--cccchhhhhHHh
Confidence            3344444444444433221  133444444444444443332  1233444444444444443321  123344444444


Q ss_pred             eecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccce
Q 010952          396 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS  467 (497)
Q Consensus       396 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~  467 (497)
                      ++++|.+...  ..+..+++|++|++.+| .+++.  ..++++++|+.|++++|++++.  ..+..+++|++
T Consensus       134 ~l~~n~l~~~--~~l~~~~~L~~L~l~~n-~l~~l--~~l~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~  198 (199)
T d2omxa2         134 ELSSNTISDI--SALSGLTSLQQLNFSSN-QVTDL--KPLANLTTLERLDISSNKVSDI--SVLAKLTNLES  198 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSS-CCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred             hhhhhhhccc--ccccccccccccccccc-cccCC--ccccCCCCCCEEECCCCCCCCC--ccccCCCCCCc
Confidence            4444444332  12334445555555544 34332  1244445555555555544432  22344444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=1.4e-14  Score=122.43  Aligned_cols=163  Identities=26%  Similarity=0.333  Sum_probs=105.4

Q ss_pred             CcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcC
Q 010952          271 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD  350 (497)
Q Consensus       271 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  350 (497)
                      +|+.|+++++.+....  .+..+++|++|++++|.+....  .++.+++|++|++++|.+++.  ..+.++++|+.|++.
T Consensus        47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccc--ccccccccccccccc
Confidence            4555555555444322  2445666666666666555422  245566677777766666542  235667777777777


Q ss_pred             CCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChh
Q 010952          351 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK  430 (497)
Q Consensus       351 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~  430 (497)
                      ++.+...  ..+..+++++.+++++|.+++.  ..+..+++|+.+++++|++.+..  .+..+++|++|++++| .+++.
T Consensus       121 ~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N-~i~~l  193 (210)
T d1h6ta2         121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKN-HISDL  193 (210)
T ss_dssp             TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSS-CCCBC
T ss_pred             ccccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc--cccCCCCCCEEECCCC-CCCCC
Confidence            7666542  3456677788888877776653  23556788888888888877653  3667788888888888 67763


Q ss_pred             HHHHhhcCCCCcEEEeeC
Q 010952          431 TLELISGLTGLVSLNVSN  448 (497)
Q Consensus       431 ~~~~l~~~~~L~~L~l~~  448 (497)
                        +.+.++++|+.|++++
T Consensus       194 --~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         194 --RALAGLKNLDVLELFS  209 (210)
T ss_dssp             --GGGTTCTTCSEEEEEE
T ss_pred             --hhhcCCCCCCEEEccC
Confidence              3577888888888864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=2.5e-14  Score=119.77  Aligned_cols=159  Identities=31%  Similarity=0.419  Sum_probs=86.0

Q ss_pred             CcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcC
Q 010952          271 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD  350 (497)
Q Consensus       271 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  350 (497)
                      +++.|+++++.+...  ..++.+++|++|++++|.+....  .+..+++|++|++++|.+....  .+.++++|+.++++
T Consensus        41 ~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~  114 (199)
T d2omxa2          41 QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLF  114 (199)
T ss_dssp             TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECC
T ss_pred             CCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCccccccccccccccccc--cccccccccccccc
Confidence            444444444443321  12344555555555555544322  2445555555555555443321  24555666666666


Q ss_pred             CCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChh
Q 010952          351 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK  430 (497)
Q Consensus       351 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~  430 (497)
                      ++.....  ..+..+++|+.+++++|.+...  ..+..+++|+.|++.+|.+++..  .+..+++|++|++++| ++++.
T Consensus       115 ~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N-~i~~i  187 (199)
T d2omxa2         115 NNQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSN-KVSDI  187 (199)
T ss_dssp             SSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSS-CCCCC
T ss_pred             ccccccc--cccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCCc--cccCCCCCCEEECCCC-CCCCC
Confidence            6555442  2345566666666666665542  23556666777777776666542  3556677777777777 56653


Q ss_pred             HHHHhhcCCCCcEE
Q 010952          431 TLELISGLTGLVSL  444 (497)
Q Consensus       431 ~~~~l~~~~~L~~L  444 (497)
                        +.++++++|+.|
T Consensus       188 --~~l~~L~~L~~L  199 (199)
T d2omxa2         188 --SVLAKLTNLESL  199 (199)
T ss_dssp             --GGGGGCTTCSEE
T ss_pred             --ccccCCCCCCcC
Confidence              235666666654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.8e-15  Score=131.56  Aligned_cols=201  Identities=15%  Similarity=0.103  Sum_probs=106.8

Q ss_pred             eEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEecc
Q 010952           54 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE  133 (497)
Q Consensus        54 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  133 (497)
                      ++++.++.+++ .+|..+  .+++++|+++++ .+......+|.++++|++|++++|.......+..|.+++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l--~~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS--CSCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCC--CCCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            56777776665 344333  247888888877 56655555677788888888888764333334456677777777766


Q ss_pred             Ccccccc-ccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcC-CCCcEEEccCCCCC
Q 010952          134 RCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL-QKLTLLNLEGCPVT  211 (497)
Q Consensus       134 ~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~  211 (497)
                      .+..+.. .+..+..+++|++++++++..........+..+..+..+...++.+.......+.++ ..++.+.+.++.+.
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            5433333 334466777777777776543222222222333444444444444444333334333 24555666665554


Q ss_pred             hHHHHHhhCCCCCcEEE-cCCCCCChhHhHhhhcCCCCCEEEccCCCCC
Q 010952          212 AACLDSLSALGSLFYLN-LNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT  259 (497)
Q Consensus       212 ~~~~~~l~~l~~L~~L~-l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  259 (497)
                      ..... .....+++.+. ++++.+.......|..+++|++|++++|.+.
T Consensus       167 ~i~~~-~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         167 EIHNC-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             EECTT-TTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             ccccc-cccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence            42222 22233333332 3444444433334455555555555555544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.46  E-value=5.1e-12  Score=116.06  Aligned_cols=56  Identities=20%  Similarity=0.132  Sum_probs=30.8

Q ss_pred             cCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccCh
Q 010952          389 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS  453 (497)
Q Consensus       389 ~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~  453 (497)
                      +++|++|++++|++....    ..+++|+.|++++| +++.. +   ..+++|++|++++|+++.
T Consensus       283 ~~~L~~L~Ls~N~l~~lp----~~~~~L~~L~L~~N-~L~~l-~---~~~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIELP----ALPPRLERLIASFN-HLAEV-P---ELPQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             CTTCCEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCC-C---CCCTTCCEEECCSSCCSS
T ss_pred             CCCCCEEECCCCccCccc----cccCCCCEEECCCC-cCCcc-c---cccCCCCEEECcCCcCCC
Confidence            456666666666655432    12456666666666 55542 1   123466666666666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.7e-14  Score=125.32  Aligned_cols=202  Identities=11%  Similarity=0.051  Sum_probs=141.1

Q ss_pred             CceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEE
Q 010952           51 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL  130 (497)
Q Consensus        51 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  130 (497)
                      +++++|+++++.++.....+|.++++|++|++++|.........+|.++++++++.+..+.......+..+..+++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            58999999999987544556899999999999998433334456788999999999876544566667778999999999


Q ss_pred             eccCcccccccc-ccccCCCCCCEEeccCCCCCCccccccccCC-CCCCEEEeeccccCchhHHhhhcCCCCcEE-EccC
Q 010952          131 DLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLL-NLEG  207 (497)
Q Consensus       131 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L-~l~~  207 (497)
                      +++++....... ..+..+..+..+...+ ..+.......+..+ ..++.+++.++.++......+. ..++..+ .+.+
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n-~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~  186 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDN-INIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDN  186 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESC-TTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTC
T ss_pred             ccchhhhcccccccccccccccccccccc-cccccccccccccccccceeeeccccccccccccccc-chhhhccccccc
Confidence            999964322211 2233344444444443 33444444555555 4788899999888865544444 3455444 5677


Q ss_pred             CCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEcc
Q 010952          208 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG  254 (497)
Q Consensus       208 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  254 (497)
                      +.++...+..+.++++|++|++++|.+....+..|..+++|+++++.
T Consensus       187 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             TTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             cccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            77776545568899999999999999886655566666666666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.1e-13  Score=110.93  Aligned_cols=134  Identities=19%  Similarity=0.224  Sum_probs=80.4

Q ss_pred             CCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCee
Q 010952          340 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL  419 (497)
Q Consensus       340 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  419 (497)
                      +..++++|++++|+++... ..+..+++|+.|++++|.+...  ..+..+++|++|++++|.++...+..+..+++|++|
T Consensus        16 n~~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            3445556666665555431 2233456666666666665543  224556667777777777666544445566777777


Q ss_pred             cccCCCCCChhH-HHHhhcCCCCcEEEeeCCccChhH---HHhhcCCcccceeecccCCCCHHH
Q 010952          420 NLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAG---LRHLKPLKNLRSLTLESCKVTAND  479 (497)
Q Consensus       420 ~l~~~~~l~~~~-~~~l~~~~~L~~L~l~~~~l~~~~---~~~l~~~~~L~~L~l~~~~~~~~~  479 (497)
                      ++++| .+.+.. ...+..+++|+.|++++|++++..   ...+..+|+|+.|+  +.+++...
T Consensus        93 ~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD--~~~i~~~e  153 (162)
T d1a9na_          93 ILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD--FQKVKLKE  153 (162)
T ss_dssp             ECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET--TEECCHHH
T ss_pred             eeccc-cccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC--CCCCCHHH
Confidence            77777 555432 245667777888888887765532   23456678888776  44555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.38  E-value=1.5e-11  Score=112.82  Aligned_cols=137  Identities=22%  Similarity=0.140  Sum_probs=82.8

Q ss_pred             cCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhc-cCCCC
Q 010952          315 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN-FKNLR  393 (497)
Q Consensus       315 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~  393 (497)
                      ..++.|+.++++++.....    .....++..+.+..+.+...    ....+.+...++..+.+...     .. .....
T Consensus       201 ~~l~~L~~l~l~~n~~~~~----~~~~~~l~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~l-----~~l~~~~~  267 (353)
T d1jl5a_         201 QNLPFLTTIYADNNLLKTL----PDLPPSLEALNVRDNYLTDL----PELPQSLTFLDVSENIFSGL-----SELPPNLY  267 (353)
T ss_dssp             TTCTTCCEEECCSSCCSSC----CSCCTTCCEEECCSSCCSCC----CCCCTTCCEEECCSSCCSEE-----SCCCTTCC
T ss_pred             ccccccccccccccccccc----cccccccccccccccccccc----cccccccccccccccccccc-----ccccchhc
Confidence            3455666666666543321    12234566666666554431    11234556666555543321     11 23344


Q ss_pred             eeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccC
Q 010952          394 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC  473 (497)
Q Consensus       394 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~  473 (497)
                      ..++..+.+....    ..+++|++|++++| .++.. +   ..+++|+.|++++|.+++..    ..+++|++|++++|
T Consensus       268 ~~~~~~~~~~~~~----~~~~~L~~L~Ls~N-~l~~l-p---~~~~~L~~L~L~~N~L~~l~----~~~~~L~~L~L~~N  334 (353)
T d1jl5a_         268 YLNASSNEIRSLC----DLPPSLEELNVSNN-KLIEL-P---ALPPRLERLIASFNHLAEVP----ELPQNLKQLHVEYN  334 (353)
T ss_dssp             EEECCSSCCSEEC----CCCTTCCEEECCSS-CCSCC-C---CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSS
T ss_pred             ccccccCcccccc----ccCCCCCEEECCCC-ccCcc-c---cccCCCCEEECCCCcCCccc----cccCCCCEEECcCC
Confidence            5556666555431    23589999999999 77753 2   34789999999999988632    23568999999999


Q ss_pred             CCCH
Q 010952          474 KVTA  477 (497)
Q Consensus       474 ~~~~  477 (497)
                      +++.
T Consensus       335 ~L~~  338 (353)
T d1jl5a_         335 PLRE  338 (353)
T ss_dssp             CCSS
T ss_pred             cCCC
Confidence            9865

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=9.5e-14  Score=111.25  Aligned_cols=130  Identities=19%  Similarity=0.220  Sum_probs=104.9

Q ss_pred             hcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCC
Q 010952          362 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL  441 (497)
Q Consensus       362 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L  441 (497)
                      +.++.++++|++++|+++.. +..+..+++|+.|++++|++...  ..+..+++|++|++++| .++...+..+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccc-cccCCCcccccccccc
Confidence            44678899999999998876 34456789999999999999876  35778999999999999 7887655556789999


Q ss_pred             cEEEeeCCccChhH-HHhhcCCcccceeecccCCCCHH-HHHHHhhcCCCCCccCC
Q 010952          442 VSLNVSNSRITSAG-LRHLKPLKNLRSLTLESCKVTAN-DIKRLQSRDLPNLVSFR  495 (497)
Q Consensus       442 ~~L~l~~~~l~~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~p~L~~l~  495 (497)
                      +.|++++|++.+.. ...+..+++|+++++++|+++.. ..+......+|+|+.|.
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            99999999988653 36788999999999999988653 22222225789998874

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=3.7e-13  Score=102.32  Aligned_cols=102  Identities=21%  Similarity=0.244  Sum_probs=52.5

Q ss_pred             EEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCC
Q 010952          370 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS  449 (497)
Q Consensus       370 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~  449 (497)
                      .|++++|.++...  .+..+++|++|++++|.++.. +..+..+++|++|++++| .++..  +.+..+++|+.|++++|
T Consensus         2 ~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~~l-p~~~~~l~~L~~L~l~~N-~i~~l--~~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           2 VLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDN-ALENV--DGVANLPRLQELLLCNN   75 (124)
T ss_dssp             EEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSS-CCCCC--GGGTTCSSCCEEECCSS
T ss_pred             EEEcCCCCCCCCc--ccccCCCCCEEECCCCccCcc-hhhhhhhhcccccccccc-ccccc--CccccccccCeEECCCC
Confidence            4455555554321  244555555555555555544 233455555555555555 44442  23555556666666666


Q ss_pred             ccChhH-HHhhcCCcccceeecccCCCCH
Q 010952          450 RITSAG-LRHLKPLKNLRSLTLESCKVTA  477 (497)
Q Consensus       450 ~l~~~~-~~~l~~~~~L~~L~l~~~~~~~  477 (497)
                      ++.+.. ...+..+++|+.+++++|+++.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            555432 2445555666666666665543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.30  E-value=2.5e-13  Score=112.77  Aligned_cols=128  Identities=17%  Similarity=0.230  Sum_probs=87.3

Q ss_pred             CEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCH-hHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecC
Q 010952          321 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG  399 (497)
Q Consensus       321 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  399 (497)
                      +.++.+++.++.. |..+  .+++++|++++|.++. .....+..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus        11 ~~v~Cs~~~L~~i-P~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLKEI-PRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSC-CSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcCcc-CCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            4566666655532 2212  2567777887777754 2234556677777777777777766666667777777777777


Q ss_pred             CCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccC
Q 010952          400 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  452 (497)
Q Consensus       400 ~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~  452 (497)
                      |++..+.+..|..+++|++|+|++| .++...+..+..+++|++|++++|++.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccccCHHHHhCCCcccccccCCc-cccccCHHHhcCCcccccccccccccc
Confidence            7777776666777777777777777 677766666777777777777777655

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=2e-12  Score=98.11  Aligned_cols=118  Identities=24%  Similarity=0.320  Sum_probs=79.2

Q ss_pred             cEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952          345 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  424 (497)
Q Consensus       345 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  424 (497)
                      |.|++++|.++..  ..+..+++|++|++++|.++.. |..+..+++|+.|++++|.++...  .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l--~~l~~l~~L~~L~ls~N~l~~l-p~~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSC--CCGGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCC--cccccCCCCCEEECCCCccCcc-hhhhhhhhcccccccccccccccC--ccccccccCeEECCCC
Confidence            4566777766653  2356677777777777777654 345667778888888888777652  4667788888888888


Q ss_pred             CCCChhH-HHHhhcCCCCcEEEeeCCccChhH---HHhhcCCccccee
Q 010952          425 CNLTDKT-LELISGLTGLVSLNVSNSRITSAG---LRHLKPLKNLRSL  468 (497)
Q Consensus       425 ~~l~~~~-~~~l~~~~~L~~L~l~~~~l~~~~---~~~l~~~~~L~~L  468 (497)
                       .+++.. +..+..+++|+.|++++|++++..   ......+|+|+.|
T Consensus        76 -~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 -RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             -CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             -ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence             666532 355777888888888888876421   1223446666655

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.22  E-value=1.2e-11  Score=102.34  Aligned_cols=87  Identities=25%  Similarity=0.248  Sum_probs=38.3

Q ss_pred             hhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcC
Q 010952          194 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE  273 (497)
Q Consensus       194 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~  273 (497)
                      +.++++|+.|+++++.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|+
T Consensus        50 f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~  129 (192)
T d1w8aa_          50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred             cCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccc
Confidence            34444444444444444333333344444444444444444443334444444444444444444433333344444444


Q ss_pred             EEeCCCC
Q 010952          274 SLNLDSC  280 (497)
Q Consensus       274 ~L~l~~~  280 (497)
                      .++++++
T Consensus       130 ~l~L~~N  136 (192)
T d1w8aa_         130 SLNLASN  136 (192)
T ss_dssp             EEECTTC
T ss_pred             ccccccc
Confidence            4444444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.16  E-value=6.5e-13  Score=110.27  Aligned_cols=128  Identities=23%  Similarity=0.263  Sum_probs=87.8

Q ss_pred             HHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCC
Q 010952          336 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS  415 (497)
Q Consensus       336 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~  415 (497)
                      ..+..+++|+.|++++|.++..  ..+..+++|+.|++++|.++.. +.....+++|+.|++++|.++..  ..+..+++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~~i-~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~  116 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL--SGIEKLVN  116 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEECSC-SSHHHHHHHCCEEECSEEECCCH--HHHHHHHH
T ss_pred             hHHhcccccceeECcccCCCCc--ccccCCccccChhhcccccccc-ccccccccccccccccccccccc--cccccccc
Confidence            4456677777777777776653  2355677888888888776643 22233456788888888888765  34666788


Q ss_pred             CCeecccCCCCCChhH-HHHhhcCCCCcEEEeeCCccChhHHH----------hhcCCcccceee
Q 010952          416 LTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGLR----------HLKPLKNLRSLT  469 (497)
Q Consensus       416 L~~L~l~~~~~l~~~~-~~~l~~~~~L~~L~l~~~~l~~~~~~----------~l~~~~~L~~L~  469 (497)
                      |+.|++++| .+++.. ...+..+++|+.|++++|++......          .+..+|+|+.||
T Consensus       117 L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         117 LRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccc-hhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            888888888 676643 35677888888888888887653321          245678888876

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.09  E-value=1.4e-12  Score=108.21  Aligned_cols=130  Identities=26%  Similarity=0.293  Sum_probs=102.6

Q ss_pred             HHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCC
Q 010952          360 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT  439 (497)
Q Consensus       360 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~  439 (497)
                      ..+..+++|++|++++|.+...  ..+..+++|+.|++++|.++... .....+++|++|++++| .++..  ..+..++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~~i~-~~~~~~~~L~~L~l~~N-~i~~l--~~~~~l~  115 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYN-QIASL--SGIEKLV  115 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEECSCS-SHHHHHHHCCEEECSEE-ECCCH--HHHHHHH
T ss_pred             hHHhcccccceeECcccCCCCc--ccccCCccccChhhccccccccc-ccccccccccccccccc-ccccc--ccccccc
Confidence            4567789999999999998864  24778999999999999988753 23344578999999999 78863  4577889


Q ss_pred             CCcEEEeeCCccChhH-HHhhcCCcccceeecccCCCCHHH--------HHHHhhcCCCCCccCC
Q 010952          440 GLVSLNVSNSRITSAG-LRHLKPLKNLRSLTLESCKVTAND--------IKRLQSRDLPNLVSFR  495 (497)
Q Consensus       440 ~L~~L~l~~~~l~~~~-~~~l~~~~~L~~L~l~~~~~~~~~--------~~~l~~~~~p~L~~l~  495 (497)
                      +|+.|++++|.+++.. ...+..+++|+.|++++|++....        .+......+|+|+.|.
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            9999999999998754 367899999999999999875532        1222224789998874

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=7.1e-10  Score=87.60  Aligned_cols=105  Identities=24%  Similarity=0.230  Sum_probs=49.8

Q ss_pred             CcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCC-CcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeeccc
Q 010952          344 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS  422 (497)
Q Consensus       344 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~  422 (497)
                      .+.++..++.+.+. +..+..+++|++|++.++ .++...+.+|..+++|+.|++++|++..+.+..|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~~~-p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCCTT-TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCccC-cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            34455555444432 233444555555555443 2444444444555555555555555555544445555555555555


Q ss_pred             CCCCCChhHHHHhhcCCCCcEEEeeCCcc
Q 010952          423 QNCNLTDKTLELISGLTGLVSLNVSNSRI  451 (497)
Q Consensus       423 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~l  451 (497)
                      +| +++......+. ..+|+.|+|++|++
T Consensus        89 ~N-~l~~l~~~~~~-~~~l~~L~L~~Np~  115 (156)
T d2ifga3          89 FN-ALESLSWKTVQ-GLSLQELVLSGNPL  115 (156)
T ss_dssp             SS-CCSCCCSTTTC-SCCCCEEECCSSCC
T ss_pred             CC-CCcccChhhhc-cccccccccCCCcc
Confidence            55 44433222222 22455555555544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.4e-08  Score=79.88  Aligned_cols=68  Identities=24%  Similarity=0.248  Sum_probs=30.2

Q ss_pred             cccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCC
Q 010952          144 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT  211 (497)
Q Consensus       144 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  211 (497)
                      .+..+++|++|++.+++.+......+|..+++|+.|++++|.++...+..|.++++|++|++++|++.
T Consensus        26 ~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~   93 (156)
T d2ifga3          26 HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE   93 (156)
T ss_dssp             TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred             cccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc
Confidence            33444444444444433333333344444444444444444444443444444444444444444443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.43  E-value=1.3e-06  Score=69.23  Aligned_cols=61  Identities=18%  Similarity=0.191  Sum_probs=26.7

Q ss_pred             CCCCCcEEEecCCCcChHHH----HHhhccCCCCeeeecCCCCChhhHHhh----hhcCCCCeecccCC
Q 010952          364 SLTGLTHLDLFGARITDSGA----AYLRNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQN  424 (497)
Q Consensus       364 ~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~l~~~~~~~~----~~l~~L~~L~l~~~  424 (497)
                      ..++|++|++++|.+.+...    ..+...+.|++|++++|.+++.+...+    ...++|++|++++|
T Consensus        42 ~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          42 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            33444444444444443222    222334455555555555554433322    22344555555444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.34  E-value=3.9e-06  Score=66.44  Aligned_cols=109  Identities=14%  Similarity=0.111  Sum_probs=59.3

Q ss_pred             CCCCCCEEeccCC-CCChHHH----HHhcCCCCCcEEEcCCCCCCHhHH----HHhcCCCCCcEEEecCCCcChHHHHH-
Q 010952          316 GLTNLESINLSFT-GISDGSL----RKLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDSGAAY-  385 (497)
Q Consensus       316 ~~~~L~~L~l~~~-~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~-  385 (497)
                      +.+.|++|+++++ .++....    ..+...+.|++|++++|.+.+.+.    ..+...+.|++|++++|.+++.+... 
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3456666666543 3443322    234455666666666666655433    22334566777777777776654433 


Q ss_pred             ---hhccCCCCeeeecCCCCCh---hhH----HhhhhcCCCCeecccCC
Q 010952          386 ---LRNFKNLRSLEICGGGLTD---AGV----KHIKDLSSLTLLNLSQN  424 (497)
Q Consensus       386 ---l~~~~~L~~L~l~~~~l~~---~~~----~~~~~l~~L~~L~l~~~  424 (497)
                         +...++|++|++++|.+..   .+.    ..+...++|++|+++++
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence               3556777777777664332   221    22333466666666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.24  E-value=1.1e-05  Score=63.75  Aligned_cols=85  Identities=19%  Similarity=0.266  Sum_probs=37.7

Q ss_pred             CCCCCcEEEecCCCcChHHHHH----hhccCCCCeeeecCCCCChhhHHh----hhhcCCCCeeccc--CCCCCChhH--
Q 010952          364 SLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDAGVKH----IKDLSSLTLLNLS--QNCNLTDKT--  431 (497)
Q Consensus       364 ~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~l~~~~~~~----~~~l~~L~~L~l~--~~~~l~~~~--  431 (497)
                      ..++|++|++++|.++......    +...++++.+++++|.++..+...    +...++|+.++|.  +| .+.+..  
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n-~i~~~~~~  122 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEM  122 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHH
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCC-cCcHHHHH
Confidence            3445555555555544433222    234455555555555555444322    2334555543332  23 344322  


Q ss_pred             --HHHhhcCCCCcEEEeeCC
Q 010952          432 --LELISGLTGLVSLNVSNS  449 (497)
Q Consensus       432 --~~~l~~~~~L~~L~l~~~  449 (497)
                        ...+..+++|+.|++..+
T Consensus       123 ~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         123 EIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHhCCCcCEEeCcCC
Confidence              223334455555555444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2e-07  Score=73.73  Aligned_cols=83  Identities=19%  Similarity=0.135  Sum_probs=49.5

Q ss_pred             hhccCCCCeeeecCCCCChhh--HHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhH-------H
Q 010952          386 LRNFKNLRSLEICGGGLTDAG--VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG-------L  456 (497)
Q Consensus       386 l~~~~~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~-------~  456 (497)
                      ...+++|+.|++++|+++...  ...+..+++|+.|++++| .+++.......+..+|+.|++++|++....       .
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            356777777788777777643  234556777777777777 666543322233446777777777665321       1


Q ss_pred             HhhcCCcccceee
Q 010952          457 RHLKPLKNLRSLT  469 (497)
Q Consensus       457 ~~l~~~~~L~~L~  469 (497)
                      ..+..+|+|+.||
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence            2245566666654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.21  E-value=7.3e-06  Score=64.86  Aligned_cols=113  Identities=16%  Similarity=0.168  Sum_probs=84.3

Q ss_pred             hcCCCCCcEEEecC-CCcChHHH----HHhhccCCCCeeeecCCCCChhhHHhh----hhcCCCCeecccCCCCCChhHH
Q 010952          362 LTSLTGLTHLDLFG-ARITDSGA----AYLRNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCNLTDKTL  432 (497)
Q Consensus       362 ~~~~~~L~~L~l~~-~~~~~~~~----~~l~~~~~L~~L~l~~~~l~~~~~~~~----~~l~~L~~L~l~~~~~l~~~~~  432 (497)
                      ..+.|+|++|++++ +.++....    .++...++|++|++++|.++..+...+    ...++++.+++++| .+.+...
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~-~~~~~g~   91 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGI   91 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc-cccchhH
Confidence            34678888888887 45665443    344678999999999999998766544    45699999999999 7776644


Q ss_pred             ----HHhhcCCCCcEEEee--CCccChhHH----HhhcCCcccceeecccCCC
Q 010952          433 ----ELISGLTGLVSLNVS--NSRITSAGL----RHLKPLKNLRSLTLESCKV  475 (497)
Q Consensus       433 ----~~l~~~~~L~~L~l~--~~~l~~~~~----~~l~~~~~L~~L~l~~~~~  475 (497)
                          ..+...++|+.+++.  +|++.+...    +.+..+++|+.|+++.+..
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence                556678999986664  567776443    4556789999999988754

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.5e-06  Score=68.49  Aligned_cols=61  Identities=21%  Similarity=0.223  Sum_probs=27.0

Q ss_pred             CCCCCcEEEecCCCcChHH--HHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952          364 SLTGLTHLDLFGARITDSG--AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  424 (497)
Q Consensus       364 ~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  424 (497)
                      .+++|+.|++++|+++...  +..+..+++|+.|++++|.+.............|++|++++|
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~N  125 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN  125 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCC
Confidence            3455555555555444321  222344455555555555554433322222234455555555

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.14  E-value=0.093  Score=29.01  Aligned_cols=34  Identities=26%  Similarity=0.470  Sum_probs=25.0

Q ss_pred             CCchHHHHHHHHhhhhhhccChhhHHHHhhhhcCCCCCchhHHHHHH
Q 010952            1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIA   47 (497)
Q Consensus         1 ~lp~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   47 (497)
                      .||+|++.+||++|      ++..+..   |.    .+|..|...+.
T Consensus         3 ~LP~eil~~If~~L------~~~dl~~---~~----~Vcr~w~~l~~   36 (41)
T d1fs1a1           3 SLPDELLLGIFSCL------CLPELLK---VS----GVCKRWYRLAS   36 (41)
T ss_dssp             SSCHHHHHHHHTTS------CGGGHHH---HH----TTCHHHHHHHT
T ss_pred             cCCHHHHHHHHHcC------CHHHHHH---HH----HHHHHHHHHhC
Confidence            48999999999997      4444443   33    78888887654