Citrus Sinensis ID: 010971
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 496 | 2.2.26 [Sep-21-2011] | |||||||
| P46087 | 812 | Putative ribosomal RNA me | yes | no | 0.768 | 0.469 | 0.652 | 1e-153 | |
| Q922K7 | 793 | Putative ribosomal RNA me | yes | no | 0.883 | 0.552 | 0.585 | 1e-153 | |
| O94268 | 608 | Putative ribosomal RNA me | yes | no | 0.719 | 0.587 | 0.656 | 1e-142 | |
| P40991 | 618 | Putative ribosomal RNA me | yes | no | 0.875 | 0.702 | 0.550 | 1e-135 | |
| Q60343 | 274 | tRNA (cytosine(48)-C(5))- | yes | no | 0.510 | 0.923 | 0.411 | 8e-46 | |
| C3LMI5 | 473 | Ribosomal RNA small subun | yes | no | 0.600 | 0.630 | 0.371 | 8e-45 | |
| Q9KRY1 | 473 | Ribosomal RNA small subun | yes | no | 0.600 | 0.630 | 0.371 | 8e-45 | |
| A6TB06 | 477 | Ribosomal RNA small subun | yes | no | 0.560 | 0.582 | 0.364 | 2e-44 | |
| B8CPH7 | 474 | Ribosomal RNA small subun | yes | no | 0.610 | 0.639 | 0.354 | 4e-44 | |
| B5XQ35 | 477 | Ribosomal RNA small subun | yes | no | 0.558 | 0.580 | 0.363 | 1e-43 |
| >sp|P46087|NOP2_HUMAN Putative ribosomal RNA methyltransferase NOP2 OS=Homo sapiens GN=NOP2 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 543 bits (1398), Expect = e-153, Method: Compositional matrix adjust.
Identities = 252/386 (65%), Positives = 308/386 (79%), Gaps = 5/386 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E+E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 210 LQINVDEEP--FVLPPAGEMEQDAQAP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 266
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 267 LNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 326
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 327 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 386
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 387 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQ 446
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 447 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 504
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 505 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 564
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS 386
TRRFYPH HNMDGFF+AK KK SNS
Sbjct: 565 STRRFYPHTHNMDGFFIAKFKKFSNS 590
|
May play a role in the regulation of the cell cycle and the increased nucleolar activity that is associated with the cell proliferation. May act as ribosomal RNA methyltransferase. Homo sapiens (taxid: 9606) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q922K7|NOP2_MOUSE Putative ribosomal RNA methyltransferase NOP2 OS=Mus musculus GN=Nop2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 542 bits (1396), Expect = e-153, Method: Compositional matrix adjust.
Identities = 266/454 (58%), Positives = 337/454 (74%), Gaps = 16/454 (3%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ +E + F LP E +++ Q P DL + +RI++IV VL +F ++G SR EY
Sbjct: 194 LQINVEDE-EAFVLPPAGETDQDGQAP-DLQRVHKRIQDIVGVLRDFGAQREEGRSRAEY 251
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +L+ DL +YY Y +FL+ L+E+FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 252 LSRLQKDLATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQ 311
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
+LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 312 LLINRGVNLDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 371
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 372 RILDMCCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQ 431
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DIQ+C++LQK+L+L+AID V+A
Sbjct: 432 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNA 489
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RF+ RFHP+L
Sbjct: 490 ASKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFQARRFHPTLR 549
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS-------KKTSAGPQPSETVEQQTPESNVSNGDK 413
TRRFYPH HNMDGFF+AK KK SNS +A P + +Q TP+S NG +
Sbjct: 550 STRRFYPHTHNMDGFFIAKFKKFSNSIPQPHAGNSAAATPTEPDLKDQVTPKSE--NGSQ 607
Query: 414 KTEENSEQVLMKKATTKAKDLKK---KTSGLAEN 444
T++ V K+ + KK K +G+A+
Sbjct: 608 PTKKARGAVKAKQQLLRQPHSKKPFQKLNGIAKG 641
|
May play a role in the regulation of the cell cycle and the increased nucleolar activity that is associated with the cell proliferation. May act as ribosomal RNA methyltransferase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O94268|NOP2_SCHPO Putative ribosomal RNA methyltransferase nop2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP8B7.20c PE=1 SV=1 | Back alignment and function description |
|---|
Score = 505 bits (1300), Expect = e-142, Method: Compositional matrix adjust.
Identities = 237/361 (65%), Positives = 296/361 (81%), Gaps = 4/361 (1%)
Query: 27 PPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMF 86
P DL +Q RI+EIVRVL++FK+L + G +R EYV QL D+ +YYGY+ FL L E+F
Sbjct: 188 PQDLSQIQLRIQEIVRVLNDFKNLCEPGRNRSEYVDQLLNDICAYYGYSRFLAEKLFELF 247
Query: 87 PPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQ 146
E +E E+ E PRP+ +RTNTLKT+RR+LA LINRGVNL+P+ KWSKVGL V++SQ
Sbjct: 248 SVSEAVEFFEANEMPRPVTIRTNTLKTQRRELAQALINRGVNLEPIGKWSKVGLQVFESQ 307
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
VPIGATPEY+AG Y+LQ+ASSFLPVMALAPQ ER++DM++APGGK TY+AAL KNTG+I
Sbjct: 308 VPIGATPEYLAGHYILQAASSFLPVMALAPQPNERILDMSSAPGGKVTYVAALQKNTGII 367
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP-KVLGLNTVDRVLLDAPCSGTGVI 265
+AN+ +R K+L+AN+HR+GV N IVCNYDG + P +V+G DRVLLDAPCSGTGVI
Sbjct: 368 FANDSNKARTKALSANIHRLGVRNAIVCNYDGRKFPNEVIG--GFDRVLLDAPCSGTGVI 425
Query: 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325
KD+SVKT+KS D S+LQ+QL+L+AID V+A+SK+GG+IVYSTCSI V E+EAVI
Sbjct: 426 YKDQSVKTNKSERDFDTLSHLQRQLLLSAIDSVNADSKTGGFIVYSTCSITVDEDEAVIQ 485
Query: 326 YALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
YALKKR +VKLV GL+FGR+GF RFRE RFHPSL+ TRR+YPHVHN+DGFFVAKLKK+S
Sbjct: 486 YALKKRPNVKLVSTGLEFGREGFTRFREKRFHPSLKLTRRYYPHVHNIDGFFVAKLKKIS 545
Query: 385 N 385
+
Sbjct: 546 D 546
|
Required for 60S ribosomal subunit synthesis. May act as ribosomal RNA methyltransferase. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P40991|NOP2_YEAST Putative ribosomal RNA methyltransferase Nop2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 480 bits (1236), Expect = e-135, Method: Compositional matrix adjust.
Identities = 245/445 (55%), Positives = 313/445 (70%), Gaps = 11/445 (2%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+E+ E Q+ P+L + + R+ EIV+VL NFK L +G SR EYV +L D+ Y+G
Sbjct: 181 LPTEEQEEMMAQETPNLTSTRTRMIEIVKVLENFKTLGAEGRSRGEYVDRLLKDICEYFG 240
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 241 YTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIG 300
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL P E ER++DMAAAPGGKT
Sbjct: 301 SWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKT 360
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG ++AN+ SR KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 361 TYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 418
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VD NSK GG IVYSTC
Sbjct: 419 LLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTC 478
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+EAVIDYAL+KR +VKLV GL G++ F +R +FHPS++ RR+YPH +N+
Sbjct: 479 SVAVEEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYRGKKFHPSVKLARRYYPHTYNV 538
Query: 373 DGFFVAKLKKM--SNSKKTSAGPQPSET-VEQQTPESNVSNGDKKTEENSEQVLMKKATT 429
DGFFVAK +K+ S+ A + ET ++ E + + D T E+ E + +
Sbjct: 539 DGFFVAKFQKIGPSSFDDNQASAKEKETAARKEALEEGIIHSDFATFEDEEDDKYIEKSV 598
Query: 430 KAKDLKKKTSGLAENGNVESPSNEK 454
K LKK N + PSNEK
Sbjct: 599 KNNLLKKGV-----NPKAKRPSNEK 618
|
Required for 60S ribosomal subunit synthesis. May act as ribosomal RNA methyltransferase. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q60343|TRM4_METJA tRNA (cytosine(48)-C(5))-methyltransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=trm4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 185 bits (469), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 118/287 (41%), Positives = 168/287 (58%), Gaps = 34/287 (11%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
+R NTLK L L N+GV L+ + V S IG+TPEY+ G+YM QS
Sbjct: 13 IRVNTLKINPEVLKKRLENKGVVLE--KTFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSI 70
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
SS +P + L P+E + ++DM AAPGGKTT++A LMKN G I A E+ +R K+L +N++R
Sbjct: 71 SSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINR 130
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTV--DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC 283
MGV NTI+ N D + L N + D++LLDAPCSG + K+ +V S EDI+ C
Sbjct: 131 MGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNV----SEEDIKYC 186
Query: 284 SYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPC---- 338
S QK+LI ID++ K G +VYSTCS+ V ENE VI Y L+KR DV+L+
Sbjct: 187 SLRQKELIDIGIDLL----KKDGELVYSTCSMEVEENEEVIKYILQKRNDVELIIIKANE 242
Query: 339 --GLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
G++ ++G+++ F P+ + FF+AKL+K+
Sbjct: 243 FKGINI-KEGYIKGTLRVFPPN--------------EPFFIAKLRKI 274
|
Catalyzes AdoMet-dependent formation of m5C in tRNA. Cytidine residue at either position 40 or position 48 is likely to be methylated. Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|C3LMI5|RSMF_VIBCM Ribosomal RNA small subunit methyltransferase F OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rsmF PE=3 SV=2 | Back alignment and function description |
|---|
Score = 181 bits (460), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 171/315 (54%), Gaps = 17/315 (5%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P P +L + I + ++P +R NTLK + + L P+
Sbjct: 9 EPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-P 67
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
W + G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG
Sbjct: 68 WCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPG 127
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 128 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERF 186
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + SLE IQ + QK LI +A + K GG +VY
Sbjct: 187 DAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVY 242
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
STC++ EN+ V + LK+ V F G + F + E +P ++
Sbjct: 243 STCTLSREENQQVC-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMY 296
Query: 371 NMDGFFVAKLKKMSN 385
+ +GFFVAK++K+++
Sbjct: 297 DCEGFFVAKIRKLAS 311
|
Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. Vibrio cholerae serotype O1 (strain M66-2) (taxid: 579112) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 8 |
| >sp|Q9KRY1|RSMF_VIBCH Ribosomal RNA small subunit methyltransferase F OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=rsmF PE=3 SV=2 | Back alignment and function description |
|---|
Score = 181 bits (460), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 171/315 (54%), Gaps = 17/315 (5%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P P +L + I + ++P +R NTLK + + L P+
Sbjct: 9 EPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-P 67
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
W + G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG
Sbjct: 68 WCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPG 127
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 128 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERF 186
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + SLE IQ + QK LI +A + K GG +VY
Sbjct: 187 DAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVY 242
Query: 311 STCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
STC++ EN+ V + LK+ V F G + F + E +P ++
Sbjct: 243 STCTLSREENQQVC-WHLKQTYGDAV----SFESLGNL-FEHASLALTEEGFLHIFPQMY 296
Query: 371 NMDGFFVAKLKKMSN 385
+ +GFFVAK++K+++
Sbjct: 297 DCEGFFVAKIRKLAS 311
|
Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 8 |
| >sp|A6TB06|RSMF_KLEP7 Ribosomal RNA small subunit methyltransferase F OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rsmF PE=3 SV=2 | Back alignment and function description |
|---|
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 166/299 (55%), Gaps = 21/299 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ I + ++P +R NTLK D ++ G L P+ W G + D +P+
Sbjct: 28 DFIAACQRPLRRSIRVNTLKISVDDFLSLVAPYGWQLAPV-PWCAEGFWIEREDDDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL ++ ERV+D+AAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADNRQPERVMDVAAAPGSKTTQIAARMGNAGGIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G++N + ++DG L T D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-ETFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++LI +A + + GG +VYSTC++ EN++VI++
Sbjct: 206 DADALKNWSPESNLDIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENQSVIEWL 261
Query: 328 LKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
L + + V+++P G F E H +P +++ +GFFVA+L+K +
Sbjct: 262 LSRYPQAVEILPLGELFPGAADALTAEGFLH--------VFPQIYDCEGFFVARLRKTA 312
|
Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) (taxid: 272620) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 8 |
| >sp|B8CPH7|RSMF_SHEPW Ribosomal RNA small subunit methyltransferase F OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=rsmF PE=3 SV=2 | Back alignment and function description |
|---|
Score = 179 bits (454), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 177/333 (53%), Gaps = 30/333 (9%)
Query: 74 YNEFLIGALVEMFPPVELME-LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPL 132
+N+ I ++ + P ME I KP +R NTLK ++ ++ +G + DP+
Sbjct: 4 FNQNFINSIKQDLPSHLCMEDFISYSSKPLRPSIRVNTLKISSKNFIKLMTPKGWHFDPI 63
Query: 133 SKWSKVGLVV-YDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK----ERVIDMAA 187
W + G + D +V +G T E++ G + +Q ASS LP AL E+ + V+DMA+
Sbjct: 64 P-WCENGYWIKLDQEVQLGNTIEHLQGLFYIQEASSMLPPTALLSVEQHDAQQYVLDMAS 122
Query: 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247
APG KTT IAALM N GL+ ANE ASR+K L AN+ RMGV N + ++D + +
Sbjct: 123 APGSKTTQIAALMGNKGLLVANEYSASRVKVLHANIARMGVANCALTHFDARVFGEYM-F 181
Query: 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307
D VLLDAPCSG G I KD + D++ QK LI +A + K+GG
Sbjct: 182 EIFDSVLLDAPCSGEGTIRKDPDALKNWDNNDVKGIVDTQKALIDSAFQSL----KAGGE 237
Query: 308 IVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT----- 362
+VYSTC++ EN+ V DY LK+R P ++F P +K+
Sbjct: 238 LVYSTCALSRQENQNVCDY-LKQR----YPDAVEF-------INLSSLFPGADKSCTEEG 285
Query: 363 -RRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQ 394
+P +++ +GFFVAK+KK+S+ ++ P+
Sbjct: 286 FLHVWPQIYDSEGFFVAKIKKVSSIERVLPEPK 318
|
Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. Shewanella piezotolerans (strain WP3 / JCM 13877) (taxid: 225849) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 8 |
| >sp|B5XQ35|RSMF_KLEP3 Ribosomal RNA small subunit methyltransferase F OS=Klebsiella pneumoniae (strain 342) GN=rsmF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 165/300 (55%), Gaps = 23/300 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ I + ++P +R NTLK D ++ G L P+ W + G + D +P+
Sbjct: 28 DFIAACQRPLRRSIRVNTLKISVADFLSLVAPYGWQLTPV-PWCEEGFWIERDGDDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALA---PQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
G+T E+++G + +Q ASS LPV AL PQ ERV+D+AAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADNPQ-PERVMDVAAAPGSKTTQIAARMGNAGGI 145
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVIS 266
ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV+
Sbjct: 146 LANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EAFDAILLDAPCSGEGVVR 204
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD + S E + Q++LI +A + + GG +VYSTC++ EN++V+ +
Sbjct: 205 KDADALKNWSPESNLDIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENQSVVQW 260
Query: 327 ALKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384
L + + V+++P G F E H +P +++ +GFFVA+L+K +
Sbjct: 261 LLSRYPQAVEILPLGDLFSGAADALTAEGFLH--------VFPQIYDCEGFFVARLRKTA 312
|
Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. Klebsiella pneumoniae (strain 342) (taxid: 507522) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 496 | ||||||
| 359494318 | 633 | PREDICTED: putative ribosomal RNA methyl | 0.977 | 0.766 | 0.807 | 0.0 | |
| 147778971 | 741 | hypothetical protein VITISV_037193 [Viti | 0.981 | 0.657 | 0.792 | 0.0 | |
| 255563570 | 624 | Proliferating-cell nucleolar antigen p12 | 0.969 | 0.770 | 0.788 | 0.0 | |
| 356524384 | 614 | PREDICTED: putative ribosomal RNA methyl | 0.963 | 0.778 | 0.793 | 0.0 | |
| 356569611 | 610 | PREDICTED: putative ribosomal RNA methyl | 0.963 | 0.783 | 0.788 | 0.0 | |
| 449462383 | 611 | PREDICTED: putative ribosomal RNA methyl | 0.975 | 0.792 | 0.770 | 0.0 | |
| 224061242 | 476 | predicted protein [Populus trichocarpa] | 0.955 | 0.995 | 0.750 | 0.0 | |
| 22328952 | 671 | S-adenosyl-L-methionine-dependent methyl | 0.961 | 0.710 | 0.701 | 0.0 | |
| 297803436 | 650 | hypothetical protein ARALYDRAFT_492148 [ | 0.971 | 0.741 | 0.702 | 0.0 | |
| 357460225 | 1069 | hypothetical protein MTR_3g060700 [Medic | 0.945 | 0.438 | 0.708 | 0.0 |
| >gi|359494318|ref|XP_002266863.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 821 bits (2120), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/498 (80%), Positives = 433/498 (86%), Gaps = 13/498 (2%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQLNI+EESDEFRLPTKEE++EE +QPPDLPNLQRRIKEIVRVLSNF L Q+G RK+Y
Sbjct: 135 MQLNIKEESDEFRLPTKEELQEEARQPPDLPNLQRRIKEIVRVLSNFNSLRQEGAQRKDY 194
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V+QL++DLGSYYGYNEFLIG LVEMFP VELMELIE+FEKPRPICLRTNTLKTRRRDLAD
Sbjct: 195 VEQLRVDLGSYYGYNEFLIGVLVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLAD 254
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
VL+NRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE
Sbjct: 255 VLLNRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 314
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DMAAAPGGKTTYIAALMKN G+I+ANEMK RLKSLTANLHRMGVTNT+VCNYDG E
Sbjct: 315 RIVDMAAAPGGKTTYIAALMKNGGMIFANEMKEPRLKSLTANLHRMGVTNTVVCNYDGKE 374
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPKVLG NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC++LQKQLILAAIDMVDA
Sbjct: 375 LPKVLGHNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAHLQKQLILAAIDMVDA 434
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSKSGGYIVYSTCSIM+ ENEAVIDYALKKR+VKLVPCGLDFGR GF RFREHRFH SLE
Sbjct: 435 NSKSGGYIVYSTCSIMIPENEAVIDYALKKRNVKLVPCGLDFGRPGFTRFREHRFHQSLE 494
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
KTRRFYPHVHNMDGFFVAKLKKMSNSK +PSE VE+Q PE N S+ + E ++
Sbjct: 495 KTRRFYPHVHNMDGFFVAKLKKMSNSKPNPTPSEPSE-VEEQAPEENDSDSELNMGEKTQ 553
Query: 421 QVLMKKATTKAK--------DLKKKTSGL----AENGNVESPSNEKRRKKRKFPSREEIS 468
Q K+ T K K KK+ GL ENG ESPS +RKKRKFPSREEIS
Sbjct: 554 QHPGKRGTKKEKTQQHPGKRGTKKENGGLKNAAPENGKKESPSTTTKRKKRKFPSREEIS 613
Query: 469 KVREEKRKTLREKVSSKK 486
K REEKRKT+REK + K
Sbjct: 614 KAREEKRKTMREKKGASK 631
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147778971|emb|CAN71575.1| hypothetical protein VITISV_037193 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/500 (79%), Positives = 433/500 (86%), Gaps = 13/500 (2%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQLNI+EESDEFRLPTKEE++EE +QPPDLPNLQRRIKEIVRVLSNF L Q+G RK+Y
Sbjct: 137 MQLNIKEESDEFRLPTKEELQEEARQPPDLPNLQRRIKEIVRVLSNFNSLRQEGAQRKDY 196
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V+QL++DLGSYYGYNEFLIG LVEMFP +ELMELIE+FEKPRPICLRTNTLKTRRRDLAD
Sbjct: 197 VEQLRVDLGSYYGYNEFLIGVLVEMFPVIELMELIEAFEKPRPICLRTNTLKTRRRDLAD 256
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
VL+NRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE
Sbjct: 257 VLLNRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 316
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DMAAAPGGKTTYIAALMKN+G+I+ANEMK RLKSLTANLHRMGVTNT+VCNYDG E
Sbjct: 317 RIVDMAAAPGGKTTYIAALMKNSGMIFANEMKEPRLKSLTANLHRMGVTNTVVCNYDGKE 376
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPKVLG NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC++LQKQLILAAIDMVDA
Sbjct: 377 LPKVLGHNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAHLQKQLILAAIDMVDA 436
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSKSGGYIVYSTCSIM+ ENEAVIDYALKKR+VKLVPCGLDFGR GF RFREHRFH SLE
Sbjct: 437 NSKSGGYIVYSTCSIMIPENEAVIDYALKKRNVKLVPCGLDFGRPGFTRFREHRFHQSLE 496
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
KTRRFYPHVHNMDGFFVAKLKKMSNSK +PSE VE+Q PE N S+ + E ++
Sbjct: 497 KTRRFYPHVHNMDGFFVAKLKKMSNSKPNPTPSEPSE-VEEQAPEENDSDSELNMGEKTQ 555
Query: 421 QVLMKKATTKAKDLKKKTSGL----AENGNVESPSNEKRRKKRKFPSREEISKVREEKRK 476
Q K+ T KK+ GL ENG ESPS +RKKRKFPSREEISK R +
Sbjct: 556 QHPGKRGT------KKENGGLKNAAPENGKKESPSTTTKRKKRKFPSREEISKAR--AKS 607
Query: 477 TLREKVSSKKAGSKDKGNEK 496
+RE+ S+KK S+ N +
Sbjct: 608 GMREEDSTKKQRSRAASNRQ 627
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255563570|ref|XP_002522787.1| Proliferating-cell nucleolar antigen p120, putative [Ricinus communis] gi|223538025|gb|EEF39638.1| Proliferating-cell nucleolar antigen p120, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/492 (78%), Positives = 438/492 (89%), Gaps = 11/492 (2%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
++LNI EESDEFRLPTKEE+E+E ++PPDL NLQRRI+EIVRVLSN KDL Q+G RK+Y
Sbjct: 132 LRLNINEESDEFRLPTKEELEDEARRPPDLQNLQRRIREIVRVLSNLKDLKQEGARRKDY 191
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V+QLK+DL SYYGYN+FLIG LVEMFP EL+ELIE+ EKPRPICLRTNTLKTRRRDLAD
Sbjct: 192 VEQLKMDLCSYYGYNDFLIGVLVEMFPVNELIELIEACEKPRPICLRTNTLKTRRRDLAD 251
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
VL+NRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA+SFLPVMALAPQEKE
Sbjct: 252 VLLNRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSANSFLPVMALAPQEKE 311
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DMAAAPGGKTTYIAALMKN+G+IYANE+K RLKSLTANLHRMGVTNTIVCNYDG E
Sbjct: 312 RIVDMAAAPGGKTTYIAALMKNSGIIYANEIKVPRLKSLTANLHRMGVTNTIVCNYDGRE 371
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
L K+LG N VDRVLLDAPCSGTGVISKDESVKTSKSL+DIQKC++LQKQLILAAIDMVDA
Sbjct: 372 LIKILGHNAVDRVLLDAPCSGTGVISKDESVKTSKSLDDIQKCAHLQKQLILAAIDMVDA 431
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSKSGGYIVYSTCS+MV ENEAVIDYALKKRDVKLVPCGLDFGR GF+RFREHRFHPSLE
Sbjct: 432 NSKSGGYIVYSTCSMMVAENEAVIDYALKKRDVKLVPCGLDFGRPGFIRFREHRFHPSLE 491
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
KTRRFYPHVHNMDGFFVAKLKKMSNS T+ +P E+VEQ + ESN S K+E+N+
Sbjct: 492 KTRRFYPHVHNMDGFFVAKLKKMSNSIPTAESSEPLESVEQAS-ESNES----KSEKNTA 546
Query: 421 QVLMKKATTKA-KDLKKK----TSGLAENGNVESPSNEKRRKKRKFPSREEISKVREEKR 475
+ L KK+ K K ++K ++G+++NGNV+S + K KKRKFPSR++ISK+REEKR
Sbjct: 547 EPLKKKSVVKIEKGAREKGKGLSNGVSDNGNVKSATAAKNTKKRKFPSRDDISKIREEKR 606
Query: 476 KTLREKVSSKKA 487
K LRE V +K+A
Sbjct: 607 KALRE-VKNKEA 617
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524384|ref|XP_003530809.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/484 (79%), Positives = 419/484 (86%), Gaps = 6/484 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQLNI +ESDEFRLPTKEE++EE +PPDL NLQRR KEIVRVLSNFK L Q G++RKEY
Sbjct: 122 MQLNINQESDEFRLPTKEELDEEALRPPDLSNLQRRTKEIVRVLSNFKALRQDGSTRKEY 181
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V+QLK DL +YYGYNEFLIGALVEMFP VELMELIE+FEKPRPICLRTNTLKTRRRDLAD
Sbjct: 182 VEQLKKDLCTYYGYNEFLIGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLAD 241
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE
Sbjct: 242 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 301
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
RV+DMAAAPGGKTTYIAALMKNTG+I+ANEMK RLKSLTANLHRMGV+NT+VCNYDG E
Sbjct: 302 RVVDMAAAPGGKTTYIAALMKNTGIIFANEMKVPRLKSLTANLHRMGVSNTVVCNYDGKE 361
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPKVLG+N VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC++LQK+LILAAIDMVDA
Sbjct: 362 LPKVLGVNAVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAHLQKELILAAIDMVDA 421
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSKSGGY+VYSTCSIMV ENE+VIDYALKKRDVKLVPCGLDFGR GF +FRE RFHPSLE
Sbjct: 422 NSKSGGYVVYSTCSIMVAENESVIDYALKKRDVKLVPCGLDFGRPGFTKFREQRFHPSLE 481
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
KTRRFYPHV NMDGFFVAKLKKMS+SK G SET E++ S V +K ++ E
Sbjct: 482 KTRRFYPHVQNMDGFFVAKLKKMSSSK---PGAISSETAEKEDTTSFVEEKEKSSDGIKE 538
Query: 421 QVLMKKATTKAKDLK---KKTSGLAENGNVESPSNEKRRKKRKFPSREEISKVREEKRKT 477
+ + K K K K ++GL NG S S K+R KR+FPS+EEISK RE+KR
Sbjct: 539 NGNVSSESEKGKKRKFPSKPSNGLKSNGKESSESEPKKRNKRQFPSKEEISKAREDKRNA 598
Query: 478 LREK 481
LREK
Sbjct: 599 LREK 602
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356569611|ref|XP_003552992.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/487 (78%), Positives = 421/487 (86%), Gaps = 9/487 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQLNI +ESDEFRLPTKEE+E+E +PPDL NLQRRIKEIVRVLSNFK L Q G++RKEY
Sbjct: 116 MQLNINQESDEFRLPTKEELEDEALRPPDLSNLQRRIKEIVRVLSNFKALRQDGSTRKEY 175
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V+QLK DL +YYGYNEFLIGALVEMFP VELMELIE+FEKPRP+CLRTNTLKTRRRDLAD
Sbjct: 176 VEQLKKDLCTYYGYNEFLIGALVEMFPVVELMELIEAFEKPRPMCLRTNTLKTRRRDLAD 235
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE
Sbjct: 236 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 295
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
RVIDMAAAPGGKTTYIAALMKNTG+I+ANEMK RLKSLT NLHRMGV+NT+VCNYDG E
Sbjct: 296 RVIDMAAAPGGKTTYIAALMKNTGIIFANEMKVPRLKSLTGNLHRMGVSNTVVCNYDGKE 355
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPKVLG+N VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC++LQK+LILAAIDMVDA
Sbjct: 356 LPKVLGVNVVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAHLQKELILAAIDMVDA 415
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSKSGGYIVYSTCSIMV ENEAVIDYALKKRDVKLVPCGLDFGR GF RFRE RFHPSLE
Sbjct: 416 NSKSGGYIVYSTCSIMVAENEAVIDYALKKRDVKLVPCGLDFGRPGFTRFREQRFHPSLE 475
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
KTRRFYPHV NMDGFFVAKLKKMS+SK G + SET E++ + +K+ +
Sbjct: 476 KTRRFYPHVQNMDGFFVAKLKKMSSSK---PGAKSSETAEKEEDTTTFVEEKEKSSYGIK 532
Query: 421 QVLMKKATTKAKDLKKK------TSGLAENGNVESPSNEKRRKKRKFPSREEISKVREEK 474
+ + +++K+ KK+ ++GL E G S S K+R KR FPS+EEISK REEK
Sbjct: 533 ENGNVSSESESKNGKKRKFPSKPSNGLKEKGKESSESEPKKRNKRLFPSKEEISKAREEK 592
Query: 475 RKTLREK 481
R LREK
Sbjct: 593 RNALREK 599
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462383|ref|XP_004148920.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Cucumis sativus] gi|449484971|ref|XP_004157033.1| PREDICTED: LOW QUALITY PROTEIN: putative ribosomal RNA methyltransferase NOP2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/488 (77%), Positives = 419/488 (85%), Gaps = 4/488 (0%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQLNI++ESDEFRLPTKEE+EEE +PPDL +LQRRI+EIVRVLSNFK L Q+G +RK+Y
Sbjct: 128 MQLNIKDESDEFRLPTKEELEEESLRPPDLSSLQRRIREIVRVLSNFKALRQEGATRKDY 187
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V+QLK D+GSYYGYNEFLIG LVEMFP VELMELIE+FEKPRPICLRTNTLKTRRRDLAD
Sbjct: 188 VEQLKKDIGSYYGYNEFLIGVLVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLAD 247
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQ ASSFLPVMALAPQEKE
Sbjct: 248 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQGASSFLPVMALAPQEKE 307
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DMAAAPGGKTTYIAALMKN+G+I+ANE+KA RLKSLTANLHRMGVTNT+VCNYDG E
Sbjct: 308 RIVDMAAAPGGKTTYIAALMKNSGMIFANEIKAQRLKSLTANLHRMGVTNTVVCNYDGKE 367
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPKVLG+NT DRVLLDAPCSG+GV+SKDESVKTSKSLE+IQKC+ LQKQLILAAIDMVD+
Sbjct: 368 LPKVLGMNTADRVLLDAPCSGSGVVSKDESVKTSKSLEEIQKCAELQKQLILAAIDMVDS 427
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSKSGGY+VYSTCSIMV ENEA++DYAL+KRDVKLVPCGLDFGR GF+RFRE RFHPSLE
Sbjct: 428 NSKSGGYVVYSTCSIMVDENEAIVDYALRKRDVKLVPCGLDFGRPGFIRFREKRFHPSLE 487
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
KTRRFYPHVHNMDGFFVAKLKKMSN K SA + SE++ + E + E+N
Sbjct: 488 KTRRFYPHVHNMDGFFVAKLKKMSN-KIPSA--KSSESLNEAVEEDDDDTKKVGNEKNDG 544
Query: 421 QVLMKKATTKAKDLKKKTSGLAENGNVESPSNEKRRKKRKFPSREEISKVREEKRKTLRE 480
+ L + K K + + NG P+ E R KKRKFPSREEIS+ REEKR+ LR
Sbjct: 545 ECLHPQLNDGGKGKKGSQNHVVGNGKESKPTVE-RSKKRKFPSREEISRAREEKRQALRV 603
Query: 481 KVSSKKAG 488
K K G
Sbjct: 604 KKHGSKKG 611
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061242|ref|XP_002300386.1| predicted protein [Populus trichocarpa] gi|222847644|gb|EEE85191.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/493 (75%), Positives = 415/493 (84%), Gaps = 19/493 (3%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
M+LNI EESDEFRLPT +++ +PPD+ +LQRRI EIVRVLSN KDL Q+G+SRK+Y
Sbjct: 1 MKLNIAEESDEFRLPT-QKVCSLSLRPPDIQSLQRRINEIVRVLSNLKDLKQEGSSRKDY 59
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V QLK+DL YYGYNEFLIGALVEMFP ELMELIE+FEKPRP CLRTNTLKTRRRDLA+
Sbjct: 60 VHQLKIDLCKYYGYNEFLIGALVEMFPVNELMELIEAFEKPRPTCLRTNTLKTRRRDLAN 119
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
VL+NRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAG YMLQSASSF+PVMALAPQEKE
Sbjct: 120 VLLNRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGHYMLQSASSFMPVMALAPQEKE 179
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DMAAAPGGKTTYIAALMKN+G+IYANE+KA RL+SLTANLHRMGVTNTIVCNYDG E
Sbjct: 180 RIVDMAAAPGGKTTYIAALMKNSGIIYANEIKAQRLRSLTANLHRMGVTNTIVCNYDGRE 239
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPK LGLNTVDRVLLDAPCSGTGVISKDESVK SK+ EDI++C++LQKQL+LAAIDMVDA
Sbjct: 240 LPKTLGLNTVDRVLLDAPCSGTGVISKDESVKISKTSEDIEQCAHLQKQLLLAAIDMVDA 299
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSKSGGYIVYSTCSIMV ENEA +DYALKKR+VKLVPCGLDFGR GFVRFR+HRFHPSLE
Sbjct: 300 NSKSGGYIVYSTCSIMVAENEAAVDYALKKRNVKLVPCGLDFGRPGFVRFRQHRFHPSLE 359
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
KTRRFYPHVHNMDGFFVAKLKK+SNS SAG +PSE+VEQ N S+ +K T
Sbjct: 360 KTRRFYPHVHNMDGFFVAKLKKLSNS-IPSAGTEPSESVEQAY-GLNESDREKST----- 412
Query: 421 QVLMKKATTKAKDLKKKTSGLAENGNVESPSNEKRRKKRKFPSREEISKVREEKRKTLRE 480
+T K K L T+G +G E+PS+ KR KRK PSREEISK R K + +
Sbjct: 413 ------STEKGKSL---TNGFPNDGTPENPSSAKRGMKRKIPSREEISKSRRRKEQLIER 463
Query: 481 KVS--SKKAGSKD 491
+ + GS+D
Sbjct: 464 LIGMLQRTVGSED 476
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22328952|ref|NP_194390.2| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|17979390|gb|AAL49920.1| unknown protein [Arabidopsis thaliana] gi|22136852|gb|AAM91770.1| unknown protein [Arabidopsis thaliana] gi|332659825|gb|AEE85225.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/502 (70%), Positives = 416/502 (82%), Gaps = 25/502 (4%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGT--SRK 58
++NI+E+ DEF+LPT++E+EEE ++PPDLP+LQ RI+EIVR+LSNFKDL KG R
Sbjct: 163 FKMNIKEKPDEFQLPTQKELEEEARRPPDLPSLQMRIREIVRILSNFKDLKPKGDKHERN 222
Query: 59 EYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDL 118
+YV QLK DL SYYGYNEFLIG L+EMFP VELMELIE+FEK RP +RTNTLKTRRRDL
Sbjct: 223 DYVGQLKADLSSYYGYNEFLIGTLIEMFPVVELMELIEAFEKKRPTSIRTNTLKTRRRDL 282
Query: 119 ADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQE 178
AD+L+NRGVNLDPLSKWSKVGL+VYDSQVPIGATPEY+AGFYMLQSASSFLPVMALAP+E
Sbjct: 283 ADILLNRGVNLDPLSKWSKVGLIVYDSQVPIGATPEYLAGFYMLQSASSFLPVMALAPRE 342
Query: 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG 238
KERV+DMAAAPGGKTTY+AALMKNTG+IYANEMK RLKSL+ANLHRMGVTNTIVCNYDG
Sbjct: 343 KERVVDMAAAPGGKTTYVAALMKNTGIIYANEMKVPRLKSLSANLHRMGVTNTIVCNYDG 402
Query: 239 NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMV 298
EL KVLG ++VDRVLLDAPCSGTGVISKDESVKTSKS +DI+K ++LQKQLIL AID+V
Sbjct: 403 RELTKVLGQSSVDRVLLDAPCSGTGVISKDESVKTSKSADDIKKFAHLQKQLILGAIDLV 462
Query: 299 DANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPS 358
DANSK+GGYIVYSTCS+M+ ENEAVIDYALK RDVKLVPCGLDFGR GF FREHRFHPS
Sbjct: 463 DANSKTGGYIVYSTCSVMIPENEAVIDYALKNRDVKLVPCGLDFGRPGFSSFREHRFHPS 522
Query: 359 LEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESN----------- 407
LEKTRRFYPHVHNMDGFFVAKLKKMSN+ + S +P+ T+EQ S+
Sbjct: 523 LEKTRRFYPHVHNMDGFFVAKLKKMSNAMQPSGNDEPAVTMEQAQVSSSDDDDEKAEAIE 582
Query: 408 ------VSNGDKKTEENSEQVLMKKATTKAKDL---KKKTSGLAENGNVESPSNEKRRKK 458
V++G K E N+++ K+ ++K++ K+ + E+GNVE P +++KK
Sbjct: 583 ELEKPPVASGQPKRESNTKEDTNKRKNPRSKEIHKGKRNKNTKTESGNVEEP---RKQKK 639
Query: 459 RKFPSREEISKVREEKRKTLRE 480
++ + EI++ REEKRKT+RE
Sbjct: 640 KRSQWKNEIAQAREEKRKTMRE 661
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297803436|ref|XP_002869602.1| hypothetical protein ARALYDRAFT_492148 [Arabidopsis lyrata subsp. lyrata] gi|297315438|gb|EFH45861.1| hypothetical protein ARALYDRAFT_492148 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/507 (70%), Positives = 414/507 (81%), Gaps = 25/507 (4%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGT--SRK 58
++NI+E DEF+LPT++E+EEE ++PPDLP+LQ RI+EIVRVLSNFKDL KG R
Sbjct: 142 FKMNIKEIPDEFQLPTQKELEEEARRPPDLPSLQIRIREIVRVLSNFKDLRPKGDKHERT 201
Query: 59 EYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDL 118
++V+QLK DLGSYYGYNEFLIG L+EMFP VELMELIE+FEK RP +RTNTLKTRRRDL
Sbjct: 202 DFVEQLKADLGSYYGYNEFLIGTLIEMFPVVELMELIEAFEKKRPTSIRTNTLKTRRRDL 261
Query: 119 ADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQE 178
ADVL+NRGVNLDPLSKWSKVGL+VYDSQVPIGATPEY+AGFYMLQSASSFLPVMALAP+E
Sbjct: 262 ADVLLNRGVNLDPLSKWSKVGLIVYDSQVPIGATPEYLAGFYMLQSASSFLPVMALAPRE 321
Query: 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG 238
KERV+DMAAAPGGKTTY+AALMKNTG+IYANEMK RLKSL+ANLHRMGVTNTIVCNYDG
Sbjct: 322 KERVVDMAAAPGGKTTYVAALMKNTGIIYANEMKVPRLKSLSANLHRMGVTNTIVCNYDG 381
Query: 239 NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMV 298
ELPKVLG N+VDRVLLDAPCSGTGVISKDESVKTSKS +DI+K ++LQKQLIL AID+V
Sbjct: 382 RELPKVLGQNSVDRVLLDAPCSGTGVISKDESVKTSKSADDIKKFAHLQKQLILGAIDLV 441
Query: 299 DANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPS 358
DANSK+GGYIVYSTCSIM+ ENEAVIDYALK RDVKLVPCGLDFGR GF F EHRFHPS
Sbjct: 442 DANSKTGGYIVYSTCSIMIPENEAVIDYALKNRDVKLVPCGLDFGRPGFSSFIEHRFHPS 501
Query: 359 LEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESN----------- 407
LEKTRRFYPH+HNMDGFFVAKLKKMSN+ + S +P T+EQ S+
Sbjct: 502 LEKTRRFYPHIHNMDGFFVAKLKKMSNAMQPSGNVEPDITMEQAQVSSSDDDDEKVEAIE 561
Query: 408 ------VSNGDKKTEENSEQVLMKKATTKAKDLKK-KTSGLAENG--NVESPSNEKRRKK 458
V+NG K E N+ + K+ ++K++ K K + + G NVE P +++KK
Sbjct: 562 ESEKPPVTNGQPKRESNTRENKNKQKIPRSKEIDKGKRNKYTKTGSSNVEEP---RKQKK 618
Query: 459 RKFPSREEISKVREEKRKTLREKVSSK 485
++ + EI++ REEKRK +RE K
Sbjct: 619 KRSQWKNEIAQAREEKRKAMRENAKEK 645
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357460225|ref|XP_003600394.1| hypothetical protein MTR_3g060700 [Medicago truncatula] gi|355489442|gb|AES70645.1| hypothetical protein MTR_3g060700 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/508 (70%), Positives = 402/508 (79%), Gaps = 39/508 (7%)
Query: 19 EIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFL 78
E+EEE +PPDL NLQRRIKEIVRVLSNFK L Q G +RK+YV QLK D+ SYYGYNEFL
Sbjct: 564 ELEEEALRPPDLSNLQRRIKEIVRVLSNFKALRQDGATRKDYVDQLKTDIRSYYGYNEFL 623
Query: 79 IGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKV 138
IGALVEMFP VELMELIE+FEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKV
Sbjct: 624 IGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKV 683
Query: 139 GLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAA 198
GLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKER++DMAAAPGGKTTYIAA
Sbjct: 684 GLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAA 743
Query: 199 LMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258
LMKN+G+I+ANEMK RLKSLTANLHRMGV+NT+V NYDG ELPKVLG N+VDRVLLDAP
Sbjct: 744 LMKNSGIIFANEMKVPRLKSLTANLHRMGVSNTVVSNYDGKELPKVLGFNSVDRVLLDAP 803
Query: 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT 318
CSGTGVISKDESVKTSK+LEDI+KC++LQK+L+LAAIDMVD+ SKSGGY+VYSTCSIMV
Sbjct: 804 CSGTGVISKDESVKTSKNLEDIKKCAHLQKELLLAAIDMVDSYSKSGGYVVYSTCSIMVA 863
Query: 319 ENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
ENEAVIDY LK+RDVKLVPCGLDFGR GF +FRE RFHPSL+KTRRFYPHVHNMDGFFVA
Sbjct: 864 ENEAVIDYVLKRRDVKLVPCGLDFGRPGFTKFREQRFHPSLDKTRRFYPHVHNMDGFFVA 923
Query: 379 KLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKK----TEENSEQVLMKKATTKAKDL 434
KLKKMS+ K + SET E+ E+ + D K EEN + ++ + KD
Sbjct: 924 KLKKMSHPKPA----RTSETFEKDEKETELVIDDDKPSNGVEENGKHSFELESKKRKKDK 979
Query: 435 --KKKTSGLAENGNVESPSNEKRRKKRKFPS---------------------------RE 465
K ++ + N S K+RKK KFPS RE
Sbjct: 980 FPSKPSNDVKANVKEASEPESKKRKKDKFPSKPSNDVKANVTETSEPKPKRVKRKPPSRE 1039
Query: 466 EISKVREEKRKTLREKVSSKKAGSKDKG 493
EISK REEKR L EK +K+G + +G
Sbjct: 1040 EISKAREEKRLALIEK--KRKSGKQQRG 1065
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 496 | ||||||
| TAIR|locus:2133832 | 671 | AT4G26600 [Arabidopsis thalian | 0.979 | 0.724 | 0.685 | 2.1e-182 | |
| TAIR|locus:2178393 | 682 | OLI2 "OLIGOCELLULA 2" [Arabido | 0.965 | 0.702 | 0.688 | 6.1e-174 | |
| UNIPROTKB|F1SLR6 | 821 | NOP2 "Uncharacterized protein" | 0.838 | 0.506 | 0.612 | 7.4e-137 | |
| MGI|MGI:107891 | 793 | Nop2 "NOP2 nucleolar protein" | 0.828 | 0.518 | 0.613 | 8.4e-136 | |
| RGD|1304616 | 772 | Nop2 "NOP2 nucleolar protein" | 0.973 | 0.625 | 0.549 | 2.3e-135 | |
| ZFIN|ZDB-GENE-050309-7 | 739 | nop2 "NOP2 nucleolar protein h | 0.963 | 0.646 | 0.550 | 4.7e-135 | |
| UNIPROTKB|F1N3G2 | 820 | NOP2 "Uncharacterized protein" | 0.834 | 0.504 | 0.619 | 1.2e-134 | |
| UNIPROTKB|E2RCH6 | 826 | NOP2 "Uncharacterized protein" | 0.796 | 0.478 | 0.625 | 2.3e-133 | |
| UNIPROTKB|P46087 | 812 | NOP2 "Putative ribosomal RNA m | 0.828 | 0.506 | 0.612 | 3.8e-133 | |
| UNIPROTKB|F1NK16 | 722 | Gga.5513 "Uncharacterized prot | 0.806 | 0.554 | 0.598 | 1.4e-128 |
| TAIR|locus:2133832 AT4G26600 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1697 (602.4 bits), Expect = 2.1e-182, Sum P(2) = 2.1e-182
Identities = 340/496 (68%), Positives = 398/496 (80%)
Query: 2 QLNIREESDEFRLPTKXXXXXXKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTS--RKE 59
++NI+E+ DEF+LPT+ ++PPDLP+LQ RI+EIVR+LSNFKDL KG R +
Sbjct: 164 KMNIKEKPDEFQLPTQKELEEEARRPPDLPSLQMRIREIVRILSNFKDLKPKGDKHERND 223
Query: 60 YVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLA 119
YV QLK DL SYYGYNEFLIG L+EMFP VELMELIE+FEK RP +RTNTLKTRRRDLA
Sbjct: 224 YVGQLKADLSSYYGYNEFLIGTLIEMFPVVELMELIEAFEKKRPTSIRTNTLKTRRRDLA 283
Query: 120 DVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK 179
D+L+NRGVNLDPLSKWSKVGL+VYDSQVPIGATPEY+AGFYMLQSASSFLPVMALAP+EK
Sbjct: 284 DILLNRGVNLDPLSKWSKVGLIVYDSQVPIGATPEYLAGFYMLQSASSFLPVMALAPREK 343
Query: 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239
ERV+DMAAAPGGKTTY+AALMKNTG+IYANEMK RLKSL+ANLHRMGVTNTIVCNYDG
Sbjct: 344 ERVVDMAAAPGGKTTYVAALMKNTGIIYANEMKVPRLKSLSANLHRMGVTNTIVCNYDGR 403
Query: 240 ELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVD 299
EL KVLG ++VDRVLLDAPCSGTGVISKDESVKTSKS +DI+K ++LQKQLIL AID+VD
Sbjct: 404 ELTKVLGQSSVDRVLLDAPCSGTGVISKDESVKTSKSADDIKKFAHLQKQLILGAIDLVD 463
Query: 300 ANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSL 359
ANSK+GGYIVYSTCS+M+ ENEAVIDYALK RDVKLVPCGLDFGR GF FREHRFHPSL
Sbjct: 464 ANSKTGGYIVYSTCSVMIPENEAVIDYALKNRDVKLVPCGLDFGRPGFSSFREHRFHPSL 523
Query: 360 EKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENS 419
EKTRRFYPHVHNMDGFFVAKLKKMSN+ + S +P+ T+EQ + VS+ D +E +
Sbjct: 524 EKTRRFYPHVHNMDGFFVAKLKKMSNAMQPSGNDEPAVTMEQ----AQVSSSDDD-DEKA 578
Query: 420 EQVLMXXXXXXXXXXXXXXSGLAENGNV-ESP-SNEKRRKKRKFPSREEISKVRE-EKRK 476
E + S E+ N ++P S E + KR ++ E V E K+K
Sbjct: 579 EAIEELEKPPVASGQPKRESNTKEDTNKRKNPRSKEIHKGKRNKNTKTESGNVEEPRKQK 638
Query: 477 TLREKVSSKKAGSKDK 492
R + ++ A ++++
Sbjct: 639 KKRSQWKNEIAQAREE 654
|
|
| TAIR|locus:2178393 OLI2 "OLIGOCELLULA 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1690 (600.0 bits), Expect = 6.1e-174, P = 6.1e-174
Identities = 340/494 (68%), Positives = 392/494 (79%)
Query: 8 ESDEFRLPTKXXXXXXKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLD 67
E D FRLPT+ + PPDLP L+ RI+EIVR L NFK K T+RK V+QLK D
Sbjct: 189 EHDAFRLPTEEELEEEARGPPDLPLLKTRIEEIVRALKNFKAFRPKDTTRKACVEQLKAD 248
Query: 68 LGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGV 127
LGSYYGYN FLIG LVEMFPP ELMELIE+FEK RP +RTNTLKTRRRDLADVL+NRGV
Sbjct: 249 LGSYYGYNSFLIGTLVEMFPPGELMELIEAFEKQRPTSIRTNTLKTRRRDLADVLLNRGV 308
Query: 128 NLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAA 187
NLDPLSKWSKVGLV+YDSQVPIGATPEY+AG+YMLQ ASSFLPVMALAP+E ER++D+AA
Sbjct: 309 NLDPLSKWSKVGLVIYDSQVPIGATPEYLAGYYMLQGASSFLPVMALAPRENERIVDVAA 368
Query: 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247
APGGKTTYIAALMKNTGLIYANEMK RLKSLTANLHRMGVTNTIVCNYDG ELPKVLG
Sbjct: 369 APGGKTTYIAALMKNTGLIYANEMKVPRLKSLTANLHRMGVTNTIVCNYDGRELPKVLGQ 428
Query: 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307
NTVDRVLLDAPCSGTG+ISKDESVK +K++++I+K ++LQKQL+LAAIDMVDANSK+GGY
Sbjct: 429 NTVDRVLLDAPCSGTGIISKDESVKITKTMDEIKKFAHLQKQLLLAAIDMVDANSKTGGY 488
Query: 308 IVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYP 367
IVYSTCSIMVTENEAVIDYALKKRDVKLV CGLDFGR+GF RFREHRF PSL+KTRRFYP
Sbjct: 489 IVYSTCSIMVTENEAVIDYALKKRDVKLVTCGLDFGRKGFTRFREHRFQPSLDKTRRFYP 548
Query: 368 HVHNMDGFFVAKLKKMSNSKKTSA-GPQPS-ETVEQ---QTPESNVSNGDKKTE------ 416
HVHNMDGFFVAKLKKMSN K++S G + ETVEQ + + + + ++TE
Sbjct: 549 HVHNMDGFFVAKLKKMSNVKQSSEEGDDDAVETVEQAEVSSDDDDEAEAIEETEKPSVPV 608
Query: 417 ----ENSEQVLMXXXXXXXXXXXXXXSGLAENGNVESPSNEKRRKKRKFPSREEISKVRE 472
E E+ +++ NVE PS +++KK++ + EI++ RE
Sbjct: 609 RQPKERKEKKNKEKLAKSKEDKRGKKDKKSKSENVEEPSKPRKQKKKRREWKNEIAQARE 668
Query: 473 EKRKTLREKVSSKK 486
EKR +REK +K
Sbjct: 669 EKRIAMREKAKEEK 682
|
|
| UNIPROTKB|F1SLR6 NOP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1319 (469.4 bits), Expect = 7.4e-137, Sum P(2) = 7.4e-137
Identities = 258/421 (61%), Positives = 316/421 (75%)
Query: 1 MQLNIREESDEFRLPTKXXXXXXKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE + F LP Q PDL + +RI++IV VL +F ++G SR EY
Sbjct: 208 LQINVDEE-EPFVLPL-AGEMEQDAQAPDLQRVHKRIQDIVGVLRDFGTQREEGRSRAEY 265
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+Q+L+ DL +YY Y +FL+G L+++FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 266 LQRLRKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQ 325
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 326 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 385
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ NYDG +
Sbjct: 386 RILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISNYDGRQ 445
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTG+ISKD +VKT+K +DI +C++LQK+L+L+AID V A
Sbjct: 446 FPKVVG--GFDRVLLDAPCSGTGIISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVSA 503
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHP+L
Sbjct: 504 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLR 563
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS-KKTSAGPQPSETVEQQTPESNVSNGDKKTEENS 419
TRRFYPH HNMDGFF+AK KK SNS ++ G + T S K E +S
Sbjct: 564 STRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSATSTPTNPDLPSPKGEVTPKPERSS 623
Query: 420 E 420
+
Sbjct: 624 Q 624
|
|
| MGI|MGI:107891 Nop2 "NOP2 nucleolar protein" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1311 (466.6 bits), Expect = 8.4e-136, Sum P(2) = 8.4e-136
Identities = 260/424 (61%), Positives = 322/424 (75%)
Query: 1 MQLNIREESDEFRLPTKXXXXXXKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ +E + F LP Q PDL + +RI++IV VL +F ++G SR EY
Sbjct: 194 LQINVEDE-EAFVLPP-AGETDQDGQAPDLQRVHKRIQDIVGVLRDFGAQREEGRSRAEY 251
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +L+ DL +YY Y +FL+ L+E+FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 252 LSRLQKDLATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQ 311
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
+LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 312 LLINRGVNLDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 371
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 372 RILDMCCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQ 431
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DIQ+C++LQK+L+L+AID V+A
Sbjct: 432 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNA 489
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RF+ RFHP+L
Sbjct: 490 ASKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFQARRFHPTLR 549
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS-----KKTSAGPQPSET--VEQQTPESNVSNGDK 413
TRRFYPH HNMDGFF+AK KK SNS SA P+E +Q TP+S NG +
Sbjct: 550 STRRFYPHTHNMDGFFIAKFKKFSNSIPQPHAGNSAAATPTEPDLKDQVTPKSE--NGSQ 607
Query: 414 KTEE 417
T++
Sbjct: 608 PTKK 611
|
|
| RGD|1304616 Nop2 "NOP2 nucleolar protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1326 (471.8 bits), Expect = 2.3e-135, P = 2.3e-135
Identities = 272/495 (54%), Positives = 343/495 (69%)
Query: 1 MQLNIREESDEFRLPTKXXXXXXKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE + F LP Q PDL + +RI++IV VL +F ++G SR EY
Sbjct: 189 LQINVEEE-EAFVLPP-AGQTDQDTQTPDLQRVHKRIQDIVGVLRDFGAQREEGRSRTEY 246
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ QL+ DL +YY Y +FL+ L+E+FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 247 LSQLQKDLATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQ 306
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 307 ALINRGVNLDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 366
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTIV +YDG +
Sbjct: 367 RILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIVSHYDGRQ 426
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DIQ+C++LQK+L+L+AID V+A
Sbjct: 427 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNA 484
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHP+L
Sbjct: 485 ASKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLR 544
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS-----KKTSAGPQPSET--VEQQTPES-NVSNGD 412
TRRFYPH HNMDGFF+AK KK SNS SA P+E Q TP+S N S
Sbjct: 545 ATRRFYPHTHNMDGFFIAKFKKFSNSIPQPHSGNSAAGTPTEPDLKGQVTPKSENSSQPT 604
Query: 413 KKTEENSEQVLMXXXXXXXXXXXXXXSGLAENGNVESPSNEKRRKKRKFPSREEISKVRE 472
KK ++ +G+++ + + + + P +S V+
Sbjct: 605 KKAHGAAKAKQQLVGQQHSKKPFQKMNGISKGPGLPTEPSVPNVQVSARPQESSLSDVKR 664
Query: 473 EKRKTLREKVSSKKA 487
++ L+++ + A
Sbjct: 665 KRAGKLKQRGPKQSA 679
|
|
| ZFIN|ZDB-GENE-050309-7 nop2 "NOP2 nucleolar protein homolog (yeast)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1323 (470.8 bits), Expect = 4.7e-135, P = 4.7e-135
Identities = 273/496 (55%), Positives = 346/496 (69%)
Query: 1 MQLNIREESDEFRLPTKXXXXXXKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q NI + +++F+LP P DL + +RIK+ V VLSNF + ++G R EY
Sbjct: 206 VQANI-DTTEKFKLPGAADRAKEGLLPMDLKTIHQRIKDNVDVLSNFNEKREEGKERSEY 264
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ L+ DL +YY YN+FLI L+++F EL++ +E+ E RP+ +RTNTLKTRRRDLA
Sbjct: 265 LSLLRADLCTYYSYNQFLISKLMDLFSLSELIDFLEANEVHRPVTIRTNTLKTRRRDLAQ 324
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSKVGLV+YDS VPIGATPEY+AG YMLQ ASSFLPVMAL+PQE E
Sbjct: 325 ALINRGVNLDPLGKWSKVGLVIYDSSVPIGATPEYLAGHYMLQGASSFLPVMALSPQEGE 384
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
V+DM+AAPGGKTTY+A LM+NTG+I AN+ RLKS+ N+HR+GVTN ++CNYDG +
Sbjct: 385 SVLDMSAAPGGKTTYMAQLMRNTGMIVANDANVDRLKSVVGNIHRLGVTNAVICNYDGRQ 444
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT K DI + ++LQK+LIL+AID V+A
Sbjct: 445 FPKVMG--GFDRVLLDAPCSGTGVISKDPAVKTGKDEADILRSAHLQKELILSAIDSVNA 502
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
+S++GGY+VY TCSIMV ENE V+DYALKKR+VKLVP GLDFG++GF RF+E RFHPSL+
Sbjct: 503 DSQTGGYLVYCTCSIMVEENEWVVDYALKKRNVKLVPTGLDFGKEGFTRFKEKRFHPSLK 562
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSE 420
+RRFYPH HNMDGFFVAKLKK+SN+ T+ P ET Q+ ES V +T +SE
Sbjct: 563 LSRRFYPHSHNMDGFFVAKLKKLSNTIPTA----PKETENQE--ESLVM----ETAASSE 612
Query: 421 QVLMXXXXXXXXXXXXXXSGLAENGNVESPS--NEKRRKKRKFPSREEISKVREEKRKTL 478
L N P +K K+ P + +I+K+ E K
Sbjct: 613 MKEQKPASTPEKSSFEKKQKL--NPQTSKPLIVKKKAENKKTGPKKAKIAKLDSEAAKKF 670
Query: 479 REKVSSKKAGSKDKGN 494
EK S K+ G + GN
Sbjct: 671 -EKPSKKQKGKQMNGN 685
|
|
| UNIPROTKB|F1N3G2 NOP2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1319 (469.4 bits), Expect = 1.2e-134, P = 1.2e-134
Identities = 261/421 (61%), Positives = 317/421 (75%)
Query: 1 MQLNIREESDEFRLPTKXXXXXXKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE + F LP Q PDL + +RI++IV VL +F ++G SR EY
Sbjct: 210 LQINVDEE-EPFLLPP-AGEVEQDTQAPDLQRVHKRIQDIVGVLRDFGTQREEGRSRSEY 267
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+Q+L+ DL +YY Y +FL+G L+++FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 268 LQRLRKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQ 327
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 328 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 387
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTN I+ +YDG +
Sbjct: 388 RILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNAIISHYDGRQ 447
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 448 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 505
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHP+L
Sbjct: 506 TSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLR 565
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGD--KKTEEN 418
TRRFYPH HNMDGFF+AK KK SNS S S T P+ NG K+E
Sbjct: 566 STRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGN-SATSTPTNPDLPNVNGQVTPKSESG 624
Query: 419 S 419
S
Sbjct: 625 S 625
|
|
| UNIPROTKB|E2RCH6 NOP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1307 (465.1 bits), Expect = 2.3e-133, P = 2.3e-133
Identities = 254/406 (62%), Positives = 312/406 (76%)
Query: 1 MQLNIREESDEFRLPTKXXXXXX-------KQQPPDLPNLQRRIKEIVRVLSNFKDLSQK 53
+Q+N+ EE + F LP Q PDL + +RI++IV VL +F ++
Sbjct: 213 LQINVDEE-ESFVLPLPGEMEQDILPVLDPHAQAPDLQRIHKRIQDIVGVLRDFGTQREE 271
Query: 54 GTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKT 113
G SR EY+ +L+ DL +YY Y +FL+G L+++FP EL+E +E+ E PRPI LRTNTLKT
Sbjct: 272 GRSRSEYLHRLQKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKT 331
Query: 114 RRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMA 173
RRRDLA LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG+YMLQ ASS LPVMA
Sbjct: 332 RRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGYYMLQGASSMLPVMA 391
Query: 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIV 233
LAPQE ER++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+
Sbjct: 392 LAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTII 451
Query: 234 CNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILA 293
+YDG + PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+
Sbjct: 452 SHYDGRQFPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLS 509
Query: 294 AIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREH 353
AID V+A SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE
Sbjct: 510 AIDSVNATSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRER 569
Query: 354 RFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS-KKTSAGPQPSET 398
RFHP+L TRRFYPH HNMDGFF+AK KK SNS ++ G + T
Sbjct: 570 RFHPTLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSAAST 615
|
|
| UNIPROTKB|P46087 NOP2 "Putative ribosomal RNA methyltransferase NOP2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1305 (464.4 bits), Expect = 3.8e-133, P = 3.8e-133
Identities = 259/423 (61%), Positives = 318/423 (75%)
Query: 1 MQLNIREESDEFRLPTKXXXXXXKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP Q PDL + +RI++IV +L +F ++G SR EY
Sbjct: 210 LQINVDEEP--FVLPP-AGEMEQDAQAPDLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 266
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 267 LNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 326
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 327 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 386
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 387 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQ 446
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 447 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 504
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 505 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 564
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS-KKTSAGPQPSET-----VEQQTPES-NVSNGDK 413
TRRFYPH HNMDGFF+AK KK SNS ++ G + T + Q P+S N S K
Sbjct: 565 STRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSETATPTNVDLPQVIPKSENSSQPAK 624
Query: 414 KTE 416
K +
Sbjct: 625 KAK 627
|
|
| UNIPROTKB|F1NK16 Gga.5513 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1262 (449.3 bits), Expect = 1.4e-128, P = 1.4e-128
Identities = 244/408 (59%), Positives = 312/408 (76%)
Query: 1 MQLNIREESDEFRLPTKXXXXXXKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+QLN+ E +EF+LPT +++ L + +RIK + VL NF ++G +R+EY
Sbjct: 252 LQLNL-EIDEEFKLPTDEQI---EKENIHLHVIHQRIKSNMEVLQNFGVKREEGRTRQEY 307
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ L+ D+ +YY Y++FL+ L+++FP EL+ +E+ E PRP+ +RTNTLKTRRRDLA
Sbjct: 308 LALLRRDMAAYYSYSDFLLKMLMDIFPLPELINFLEANEVPRPVTIRTNTLKTRRRDLAQ 367
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLV+YDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 368 ALINRGVNLDPLGKWSKTGLVIYDSSVPIGATPEYLAGHYMLQGASSLLPVMALAPQENE 427
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RL+S+ NLHR+GVTN +V N DG +
Sbjct: 428 RILDMCCAPGGKTSYIAQLMKNTGMILANDSNAERLRSVVGNLHRLGVTNAVVSNCDGRQ 487
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKVLG DRVLLDAPCSGTGVISKD ++KT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 488 FPKVLG--GFDRVLLDAPCSGTGVISKDPAIKTNKDEKDILRCAHLQKELLLSAIDSVNA 545
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
S++GGYIVY TCSI V ENE V+DYALKKR+V+LV GLDFG++GF RF++ RFHPSL+
Sbjct: 546 TSETGGYIVYCTCSITVEENEWVVDYALKKRNVRLVATGLDFGKEGFTRFKDRRFHPSLK 605
Query: 361 KTRRFYPHVHNMDGFFVAKLKKMSNS-KKTSAGPQPSETVEQQTPESN 407
TRRFYPH HNMDGFF+AKLKK SN+ KT +P+ E P ++
Sbjct: 606 STRRFYPHTHNMDGFFIAKLKKFSNAIPKTQKDEEPA-AAEATNPSAD 652
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P40991 | NOP2_YEAST | 2, ., 1, ., 1, ., - | 0.5505 | 0.875 | 0.7022 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00033408001 | SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00037695001 | SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (245 aa) | • | • | • | 0.944 | ||||||
| GSVIVG00036355001 | SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (842 aa) | • | • | • | 0.938 | ||||||
| GSVIVG00020673001 | SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa) | • | • | • | 0.918 | ||||||
| GSVIVG00028481001 | SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (316 aa) | • | • | 0.906 | |||||||
| GSVIVG00021307001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa) | • | • | 0.886 | |||||||
| GSVIVG00021672001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (315 aa) | • | • | • | 0.883 | ||||||
| GSVIVG00038815001 | SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa) | • | • | • | 0.873 | ||||||
| GSVIVG00031075001 | SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (573 aa) | • | • | • | 0.868 | ||||||
| GSVIVG00017910001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (481 aa) | • | • | • | 0.861 | ||||||
| GSVIVG00019318001 | SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_20, whole genome shotg [...] (245 aa) | • | • | • | 0.860 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 496 | |||
| TIGR00446 | 264 | TIGR00446, nop2p, NOL1/NOP2/sun family putative RN | 1e-112 | |
| COG0144 | 355 | COG0144, Sun, tRNA and rRNA cytosine-C5-methylases | 1e-109 | |
| pfam01189 | 277 | pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family | 1e-101 | |
| PRK14902 | 444 | PRK14902, PRK14902, 16S rRNA methyltransferase B; | 6e-64 | |
| PRK11933 | 470 | PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransf | 2e-61 | |
| PRK14901 | 434 | PRK14901, PRK14901, 16S rRNA methyltransferase B; | 3e-56 | |
| TIGR00563 | 426 | TIGR00563, rsmB, ribosomal RNA small subunit methy | 3e-44 | |
| PRK10901 | 427 | PRK10901, PRK10901, 16S rRNA methyltransferase B; | 9e-37 | |
| PRK14903 | 431 | PRK14903, PRK14903, 16S rRNA methyltransferase B; | 5e-34 | |
| PRK14904 | 445 | PRK14904, PRK14904, 16S rRNA methyltransferase B; | 4e-27 |
| >gnl|CDD|188051 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Score = 331 bits (851), Expect = e-112
Identities = 139/278 (50%), Positives = 174/278 (62%), Gaps = 15/278 (5%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
+R NTLK DL + L NRGV L+P + V +S IG+TPEY+ G+Y Q A
Sbjct: 1 IRVNTLKINVEDLLERLENRGVVLEPTCEEYFFE--VKESPFSIGSTPEYLFGYYYPQEA 58
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
SS +P +AL P+E ERV+DMAAAPGGKTT I+ LMKN G I ANE+ SR K+L +N++R
Sbjct: 59 SSMIPPIALEPREDERVLDMAAAPGGKTTQISQLMKNKGCIVANEISKSRTKALISNINR 118
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY 285
MGV NTIV N DG + L D +LLDAPCSG GVI KD S K + S EDI+ CS
Sbjct: 119 MGVLNTIVINADGRKFGAY--LLKFDAILLDAPCSGEGVIRKDPSRKRNWSEEDIKYCSL 176
Query: 286 LQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGR 344
LQK+LI AAID + K GG +VYSTCS+ V ENE VIDY L+KR DV G
Sbjct: 177 LQKELIDAAIDAL----KPGGVLVYSTCSLEVEENEEVIDYILRKRPDVVEEI---IKGD 229
Query: 345 QGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
+ F ++ R +P ++ +GFFVAKL+K
Sbjct: 230 EFFGINIG---KGEVKGALRVFPQNYDCEGFFVAKLRK 264
|
[Protein synthesis, tRNA and rRNA base modification]. Length = 264 |
| >gnl|CDD|223222 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 328 bits (843), Expect = e-109
Identities = 130/321 (40%), Positives = 181/321 (56%), Gaps = 15/321 (4%)
Query: 65 KLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLIN 124
L Y + E+L+ L + E + + +P P LR NTLK +L + L
Sbjct: 45 ILRPAFRYSHPEWLVEKLPDALGEDEAEAIAAALLRPPPRSLRVNTLKADVEELLEALEE 104
Query: 125 RGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVID 184
GV + W ++ ++ PIG PE+ G +Q +S LP + L P+ ERV+D
Sbjct: 105 AGVLDEK--PWVLDEVLRIEASGPIGRLPEFAEGLIYVQDEASQLPALVLDPKPGERVLD 162
Query: 185 MAAAPGGKTTYIAALMKNTGLI-YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243
+ AAPGGKTT++A LM+N G I A ++ RLK L NL R+GV N IV N D L +
Sbjct: 163 LCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAE 222
Query: 244 VL-GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANS 302
+L G DR+LLDAPCSGTGVI +D VK ++ EDI + + LQK+++ AA+ ++
Sbjct: 223 LLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLL---- 278
Query: 303 KSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEK 361
K GG +VYSTCS+ ENE V++ L++ D +L P L +G E L K
Sbjct: 279 KPGGVLVYSTCSLTPEENEEVVERFLERHPDFELEPVRLPWG-----PLFEGLG-SELGK 332
Query: 362 TRRFYPHVHNMDGFFVAKLKK 382
TRR YPHVH DGFF+AKL+K
Sbjct: 333 TRRLYPHVHGTDGFFIAKLRK 353
|
Length = 355 |
| >gnl|CDD|201649 pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family | Back alignment and domain information |
|---|
Score = 305 bits (784), Expect = e-101
Identities = 129/290 (44%), Positives = 168/290 (57%), Gaps = 15/290 (5%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
++E+ P LR N LKT+R L L GV L+PL ++ L V D IG+ P
Sbjct: 1 ILEANNCSPPGTLRKNVLKTKRWSLLQALELAGVQLEPLGRYPH-ALPVGDLPYSIGSLP 59
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
+ G +Q ASS L +AL PQE E ++DM AAPGGKTT+IA LMKN G + A +
Sbjct: 60 PFENGAVTVQDASSQLDAIALNPQEDEFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNK 119
Query: 214 SRLKSLTANLHRMGVTNTIVCN-YDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
RLK + AN+ R+GV N IV K+LG DR+LLDAPCSGTGVI +D +K
Sbjct: 120 QRLKRVYANIQRLGVFNIIVQEGDARQIDQKLLG-GEFDRILLDAPCSGTGVIRRDPDIK 178
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR- 331
+ DI + + LQK+L+ AA D+V K GG +VYSTCS++ ENEAVI Y L+KR
Sbjct: 179 WLRREADIAQLAELQKELLKAAWDLV----KPGGVLVYSTCSVLPEENEAVIKYFLQKRP 234
Query: 332 DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
DV+LVP GL G+ ++ + PH N DGFF AKL+
Sbjct: 235 DVELVPTGLSEGKIALA-------KRIVKGGLQSLPHELNRDGFFFAKLR 277
|
Length = 277 |
| >gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 213 bits (545), Expect = 6e-64
Identities = 101/312 (32%), Positives = 163/312 (52%), Gaps = 17/312 (5%)
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
Y + +L+ ++ + + +++ES +P +R NTLK +L + L G ++
Sbjct: 147 YSHPVWLVKRWIDQYGEEKAEKILESLNEPPKASIRVNTLKISVEELIEKLEEEGYEVEE 206
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
S S LV+ + I T + G +Q SS L AL P+ + V+D AAPGG
Sbjct: 207 -SLLSPEALVI--EKGNIAGTDLFKDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGG 263
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
KTT+IA L+KNTG + A ++ +LK + N R+G+TN D ++ + D
Sbjct: 264 KTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFD 322
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
++L+DAPCSG GVI + +K +K+ EDI+ +Q + IL + V K GG +VYS
Sbjct: 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLE-IL---ESVAQYLKKGGILVYS 378
Query: 312 TCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
TC+I ENE VI+ L++ + +LVP L + + + + + P+ +
Sbjct: 379 TCTIEKEENEEVIEAFLEEHPEFELVP--LQHEKP------DELVYEVKDGYLQILPNDY 430
Query: 371 NMDGFFVAKLKK 382
DGFF+AKL+K
Sbjct: 431 GTDGFFIAKLRK 442
|
Length = 444 |
| >gnl|CDD|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Score = 207 bits (530), Expect = 2e-61
Identities = 116/336 (34%), Positives = 171/336 (50%), Gaps = 48/336 (14%)
Query: 84 EMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV- 142
M + + + I + ++P +R NTLK D ++ G L P+ W + G +
Sbjct: 15 AMPSHLSMDDFIAACQRPLRRSIRVNTLKISVADFLQLMAPYGWTLTPIP-WCEEGFWIE 73
Query: 143 --YDSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAA 198
+ +P+G T E+++G + +Q ASS LPV AL +RV+DMAAAPG KTT IAA
Sbjct: 74 RDDEDALPLGNTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAA 133
Query: 199 LMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVL 254
LM N G I ANE ASR+K L AN+ R GV+N + ++D G LP+ T D +L
Sbjct: 134 LMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPE-----TFDAIL 188
Query: 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314
LDAPCSG G + KD + S E + + Q++LI +A + K GG +VYSTC+
Sbjct: 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHAL----KPGGTLVYSTCT 244
Query: 315 IMVTENEAVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR------RF 365
+ EN+AV + LK+ V+ P G F P EK
Sbjct: 245 LNREENQAVCLW-LKETYPDAVEFEPLGDLF--------------PGAEKALTEEGFLHV 289
Query: 366 YPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQ 401
+P +++ +GFFVA+L+K + S P+ +
Sbjct: 290 FPQIYDSEGFFVARLRKTA-----SVPRLPAPKYKV 320
|
Length = 470 |
| >gnl|CDD|237856 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 193 bits (492), Expect = 3e-56
Identities = 99/318 (31%), Positives = 157/318 (49%), Gaps = 31/318 (9%)
Query: 68 LGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGV 127
L + + ++L+ +E E +L + F +P + LR N L+T ++ L G+
Sbjct: 143 LAILHSFPDWLVKLWLEWLGLEEAEQLCKWFNQPPSLDLRINPLRTSLEEVQAALAEAGI 202
Query: 128 NLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAA 187
P+ + GL + + I P Y G++ +Q S+ L L PQ E ++D A
Sbjct: 203 TATPIPGLPQ-GLRLTGNPGSIRQLPGYEEGWWTVQDRSAQLVAPLLDPQPGEVILDACA 261
Query: 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG- 246
APGGKTT+IA LM + G I+A + ASRLK L N R+G+ + + D L ++
Sbjct: 262 APGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQ 321
Query: 247 -LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305
DR+LLDAPCSG G + + + ++ E IQ+ + LQ +L+ + ++ K G
Sbjct: 322 WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLL----KPG 377
Query: 306 GYIVYSTCSIMVTENEAVIDYAL-KKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRR 364
G +VY+TC++ ENEA I+ L + D KL P K +
Sbjct: 378 GTLVYATCTLHPAENEAQIEQFLARHPDWKLEP----------------------PKQKI 415
Query: 365 FYPHVHNMDGFFVAKLKK 382
+PH + DGFF+A L+K
Sbjct: 416 -WPHRQDGDGFFMAVLRK 432
|
Length = 434 |
| >gnl|CDD|233025 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 3e-44
Identities = 95/326 (29%), Positives = 149/326 (45%), Gaps = 24/326 (7%)
Query: 59 EYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDL 118
E + L + Y + E+L+ L + +P + E+ + P+ LR N K R +
Sbjct: 122 EELLAEFNALDARYLHPEWLVKRLQKAYPGQW-QSICEANNQRPPMWLRINRTKHSRDEW 180
Query: 119 ADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQE 178
+L G+ P V ++ + A P + G+ +Q AS+ LAPQ
Sbjct: 181 LALLAEAGMKGFPHDLAPDA--VRLETPAAVHALPGFEEGWVTVQDASAQWVATWLAPQN 238
Query: 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI-VCNYD 237
+E ++D AAPGGKTT+I L + A ++ RLK + NL R+G+T + D
Sbjct: 239 EETILDACAAPGGKTTHILELAPQ-AQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGD 297
Query: 238 GNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDM 297
G + DR+LLDAPCS TGVI + +K + DI + + LQ +++ A +
Sbjct: 298 GRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPL 357
Query: 298 VDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHP 357
+ K+GG +VY+TCS++ EN I L++ DF F +
Sbjct: 358 L----KTGGTLVYATCSVLPEENSEQIKAFLQEH--------PDF------PFEKTGTPE 399
Query: 358 SLEKTR-RFYPHVHNMDGFFVAKLKK 382
+ + PH DGFF AKL K
Sbjct: 400 QVRDGGLQILPHAEEGDGFFYAKLIK 425
|
This protein is also known as sun protein. The reading frame was originally interpreted as two reading frames, fmu and fmv. The recombinant protein from E. coli was shown to methylate only C967 of small subunit (16S) ribosomal RNA and to produce only m5C at that position. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles [Protein synthesis, tRNA and rRNA base modification]. Length = 426 |
| >gnl|CDD|236790 PRK10901, PRK10901, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 9e-37
Identities = 102/344 (29%), Positives = 162/344 (47%), Gaps = 39/344 (11%)
Query: 43 VLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPR 102
VL F + ++E + +L+ D + Y + +LI L + +P + ++ + +
Sbjct: 118 VLRRF--QRE----QEELLAELQADPVARYNHPSWLIKRLKKAYP-EQWQAILAANNQRP 170
Query: 103 PICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYML 162
P+ LR N R +L G+ P + + ++ VP+ P + G+ +
Sbjct: 171 PMWLRVNRRHHSRDAYLALLAEAGIEAFP-HAVGPDAIRL-ETPVPVHQLPGFAEGWVSV 228
Query: 163 QSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTAN 222
Q A++ L LAPQ ERV+D AAPGGKT +I L ++ A ++ A RL+ + N
Sbjct: 229 QDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVV-ALDIDAQRLERVREN 287
Query: 223 LHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK 282
L R+G+ T++ D + + DR+LLDAPCS TGVI + +K + EDI
Sbjct: 288 LQRLGLKATVIVG-DARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAA 346
Query: 283 CSYLQKQLILAAI-DMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGL 340
+ LQ + IL A+ ++ K GG ++Y+TCSI+ ENE I L + D +L+ G
Sbjct: 347 LAALQSE-ILDALWPLL----KPGGTLLYATCSILPEENEQQIKAFLARHPDAELLDTGT 401
Query: 341 --DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382
GRQ P + DGFF A L K
Sbjct: 402 PQQPGRQ-------------------LLPGEEDGDGFFYALLIK 426
|
Length = 427 |
| >gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 5e-34
Identities = 80/292 (27%), Positives = 144/292 (49%), Gaps = 8/292 (2%)
Query: 46 NFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPIC 105
NFK L R V + K +L Y + ++L+ P ++ ++E ++P P
Sbjct: 107 NFKKLVNAVLRRLRTVPEPK-ELHLKYSHPKWLVNYWRSFLPEEAVLRIMEWNQEPLPTM 165
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
LR N+L R ++ +L G P K S L+V V + + G +Q
Sbjct: 166 LRVNSLAITREEVIKILAEEGTEAVP-GKHSPFSLIVRKLGVNMNDSRVIKDGLATVQGE 224
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
SS + + + + RV+D AAPGGKTT IA LMK+ G I A ++ +++ + + R
Sbjct: 225 SSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR 284
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY 285
+ +++ + D L + + +T DR+L+DAPC+ G V + ED +K S
Sbjct: 285 LKLSSIEIKIADAERLTEYVQ-DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSE 343
Query: 286 LQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN-EAVIDYALKKRDVKLV 336
+Q +++ A ++ + GG ++YSTC++ EN E V + +++D +++
Sbjct: 344 IQLRIVSQAWKLL----EKGGILLYSTCTVTKEENTEVVKRFVYEQKDAEVI 391
|
Length = 431 |
| >gnl|CDD|237858 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 4e-27
Identities = 55/168 (32%), Positives = 93/168 (55%), Gaps = 7/168 (4%)
Query: 163 QSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTAN 222
Q+ + L + L PQ V+D+ AAPGGK+T++A LM+N G I A + +L+ + ++
Sbjct: 235 QNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSH 294
Query: 223 LHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK 282
+G+ TI+ +G+ D +LLDAPC+GTGV+ + ++ + E + +
Sbjct: 295 ASALGI--TIIETIEGDARSFSPEE-QPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAE 351
Query: 283 CSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330
LQ +L+ A ++ GG +VY+TCSI ENE I+ L++
Sbjct: 352 LVGLQAELLDHAASLLKP----GGVLVYATCSIEPEENELQIEAFLQR 395
|
Length = 445 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 496 | |||
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 100.0 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 100.0 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 100.0 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 100.0 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 100.0 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 100.0 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 100.0 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 100.0 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.66 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.61 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.54 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.53 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.49 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.47 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.46 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.46 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.44 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.44 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.44 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.43 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.42 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.42 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.41 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.4 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.4 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.39 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.39 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.37 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.36 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.36 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.34 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.34 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.32 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.3 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 99.28 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.28 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.28 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.28 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.27 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.26 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.26 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.25 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.24 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.24 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.22 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.21 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.21 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.21 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.21 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.2 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.18 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.17 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.17 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.17 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.16 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.15 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.15 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.15 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.14 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.12 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.12 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.11 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.11 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.1 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.09 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.08 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.08 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.08 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.07 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.06 | |
| PLN02476 | 278 | O-methyltransferase | 99.06 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.06 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.04 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.04 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.04 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.04 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.03 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.03 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.0 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.0 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 98.98 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 98.98 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.98 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.97 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 98.97 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.95 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.94 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.94 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 98.92 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.91 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.9 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.89 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.88 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 98.88 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.87 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 98.87 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 98.87 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.87 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.85 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 98.85 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.85 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.84 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.84 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.84 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 98.83 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.83 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 98.83 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.82 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.82 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.82 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.8 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.8 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.79 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.77 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 98.76 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.76 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.76 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.76 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 98.74 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.74 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.74 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 98.74 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.73 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.72 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.71 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.71 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 98.71 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.7 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.67 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.67 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.66 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.66 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.65 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.63 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.61 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.6 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.59 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.57 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.54 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.54 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.53 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.52 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.51 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.47 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.47 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.47 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.46 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.45 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.44 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.43 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.41 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.41 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.41 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 98.4 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 98.4 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.4 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.34 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.33 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.33 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.33 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.31 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.29 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.28 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.28 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.27 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 98.27 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.26 | |
| PLN02366 | 308 | spermidine synthase | 98.26 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.25 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.24 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.22 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.21 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 98.21 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.17 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.16 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.13 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.1 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.09 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.08 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.06 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 98.06 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.04 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.0 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.99 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.98 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 97.96 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 97.93 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 97.93 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 97.91 | |
| PLN02823 | 336 | spermine synthase | 97.82 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.8 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 97.78 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.77 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.75 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.75 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 97.73 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.72 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.71 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.7 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.7 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 97.7 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 97.64 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 97.64 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.62 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 97.6 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.58 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 97.57 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.56 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 97.55 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.52 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 97.52 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 97.48 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 97.47 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 97.45 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.45 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.37 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.37 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 97.35 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.28 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.17 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.15 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 97.15 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 97.13 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.08 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 97.04 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 97.03 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.02 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.0 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.97 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 96.91 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 96.88 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 96.82 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.8 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 96.78 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.71 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 96.51 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 96.5 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 96.47 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 96.45 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 96.42 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.14 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.11 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 96.11 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 96.02 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 95.99 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.99 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 95.93 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 95.78 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 95.73 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 95.71 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 95.71 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 95.56 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 95.53 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 95.44 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 95.4 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 95.34 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 95.33 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 95.23 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 94.98 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 94.94 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 94.92 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.84 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 94.71 | |
| PHA01634 | 156 | hypothetical protein | 94.61 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 94.4 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 94.31 | |
| KOG2782 | 303 | consensus Putative SAM dependent methyltransferase | 94.23 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 94.17 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 93.95 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 93.88 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 93.62 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 93.56 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 92.83 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 92.78 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 92.73 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 92.66 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 92.42 | |
| PRK13699 | 227 | putative methylase; Provisional | 92.31 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 92.29 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 92.11 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 92.1 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 92.09 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 91.83 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 91.53 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 91.15 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 91.0 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 90.86 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 90.83 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 90.7 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 90.66 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 90.58 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 90.5 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 90.49 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 90.23 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 90.19 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 90.06 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 90.0 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.0 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 89.93 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 89.91 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 89.79 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 89.72 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 89.58 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 89.5 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 89.15 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 88.97 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 88.83 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 88.82 | |
| PRK13699 | 227 | putative methylase; Provisional | 88.79 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 88.78 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 88.6 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 88.5 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 88.26 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 88.16 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 88.02 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 88.0 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 87.89 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 87.87 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 87.79 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 87.78 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 87.68 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 87.58 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 87.1 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 87.05 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 86.91 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 86.76 | |
| PRK08643 | 256 | acetoin reductase; Validated | 86.65 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 86.6 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 86.51 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 86.35 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 86.26 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 86.11 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 86.11 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 86.05 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 86.0 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 85.95 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 85.79 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 85.74 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 85.64 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 85.53 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 85.43 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 85.43 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 85.31 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 85.25 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 85.19 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 85.17 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 84.83 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 84.7 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 84.54 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 84.5 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 84.44 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 84.37 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 84.31 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 84.21 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 84.17 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 84.08 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 83.85 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 83.5 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 83.46 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 83.4 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 83.32 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 83.26 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 83.12 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 83.03 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 82.85 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 82.84 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 82.83 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 82.59 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 82.58 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 82.32 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 82.28 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 82.15 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 82.09 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 82.06 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 82.05 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 82.03 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 81.93 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 81.9 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 81.5 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 81.5 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 81.47 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 81.19 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 81.18 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 81.18 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 80.98 | |
| PRK05717 | 255 | oxidoreductase; Validated | 80.94 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 80.81 | |
| KOG3673 | 845 | consensus FtsJ-like RNA methyltransferase [RNA pro | 80.53 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 80.4 | |
| KOG1197 | 336 | consensus Predicted quinone oxidoreductase [Energy | 80.33 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 80.15 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 80.04 |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-90 Score=704.25 Aligned_cols=375 Identities=69% Similarity=1.049 Sum_probs=360.3
Q ss_pred cccccccccccCCChHHHHHhhcCCCChhHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHhHhHHHHhcChHHHHHHH
Q 010971 3 LNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGAL 82 (496)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~y~~p~wl~~~l 82 (496)
+|+.++.+.|.||+.++.++... ++|++.++.||.+++.+|.+|+.++.+++++..|+..+..+++.||+|..+|+..+
T Consensus 67 ~~~~~~~~~l~lp~~~~~~~~~~-~P~L~~v~~~~~~~~~~l~dfk~l~~~~~~~~~~~~~l~~~~~~~y~y~~~l~~~~ 145 (460)
T KOG1122|consen 67 TNTFEEGDPLLLPTLEEEEEKDS-VPDLQNVDLRIVELVPVLGDFKNLKEPGRLRSEYCGQLKKDGAHYYAYGVFLAEKL 145 (460)
T ss_pred hccccccccccCccccccccccc-CCccchhhHHhhhhhhhhcchhcccccccchhhHHHHHHhcccceechHHHHHHHh
Confidence 45667789999999996655544 45999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEecCCCCCCCCcccccccEEE
Q 010971 83 VEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYML 162 (496)
Q Consensus 83 ~~~~~~~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~~~~~i~~~~~~~~G~~~i 162 (496)
++.|+..++.+|+++++.++|+++|.||+|+.+++++..|.++|+.++|.++|++.|++++++.++++++|+|++|+|++
T Consensus 146 ~e~~~~~ev~~~~e~~~~~rp~tir~ntlk~~rrd~~~~L~nrgv~~~pl~~ws~vgl~v~~s~vpigat~e~lag~~~L 225 (460)
T KOG1122|consen 146 MELFPLVEVYEFLEANEKPRPVTIRTNTLKTRRRDLAVELSNRGVNLDPLGKWSKVGLVVFDSVVPIGATPEYLAGHYML 225 (460)
T ss_pred cccccHHHHHHHHHhhcCCCCeeEEecccchhhhhHHHHHHhcccCcccccccccceEEEecCccccCCchhhcccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc
Q 010971 163 QSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP 242 (496)
Q Consensus 163 Qd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~ 242 (496)
|+++|++++++|+||||++||||||||||||+|||++|+++|.|+|+|.+..|++.+.+|+++||+.|.+++++|++.||
T Consensus 226 Q~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~ 305 (460)
T KOG1122|consen 226 QNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFP 305 (460)
T ss_pred ccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred -cccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCH
Q 010971 243 -KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (496)
Q Consensus 243 -~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE 321 (496)
+.+. ++||+||+||||||+|++.|++.++|.++..++.+++++|++||.+|+++| ++||+||||||||+++|||
T Consensus 306 ~~~~~-~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv----~~GGvLVYSTCSI~~~ENE 380 (460)
T KOG1122|consen 306 EKEFP-GSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLV----KAGGVLVYSTCSITVEENE 380 (460)
T ss_pred ccccC-cccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhc----cCCcEEEEEeeecchhhhH
Confidence 4443 489999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred HHHHHHHHhC-CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEecCC
Q 010971 322 AVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385 (496)
Q Consensus 322 ~vV~~~L~~~-~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~~~ 385 (496)
+||+|+|.++ .++|+|+++.+|.+| .|++++|||++..+.|+|||.|++||||+|+|+|.++
T Consensus 381 ~vV~yaL~K~p~~kL~p~~~~iG~~G--~~~~~~~~psl~~~~r~yPh~hnmdgffvaKl~k~s~ 443 (460)
T KOG1122|consen 381 AVVDYALKKRPEVKLVPTGLDIGGEG--RFRGGRFHPSLKLTRRFYPHVHNMDGFFVAKLKKASN 443 (460)
T ss_pred HHHHHHHHhCCceEeccccccCCCCC--cccCcccCcchhheeeecCcccCCchHHHHHHHhhcc
Confidence 9999999998 899999999999999 7899999999999999999999999999999999983
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-69 Score=563.13 Aligned_cols=302 Identities=42% Similarity=0.658 Sum_probs=272.5
Q ss_pred HHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEecCCCCC
Q 010971 70 SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPI 149 (496)
Q Consensus 70 ~~y~~p~wl~~~l~~~~~~~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~~~~~i 149 (496)
..|+||.|+++.|.+.||.+++++++++++.++|+++|||+++.+++++...|...|+...+. .+...++.+ ....++
T Consensus 50 ~~~~~p~w~~~~~~~~~~~~~~~~~~~a~~~~~~~~~Rvn~lk~~~~~~~~~l~~~~~~~~~~-~~~~~~~~i-~~~~~~ 127 (355)
T COG0144 50 FRYSHPEWLVEKLPDALGEDEAEAIAAALLRPPPRSLRVNTLKADVEELLEALEEAGVLDEKP-WVLDEVLRI-EASGPI 127 (355)
T ss_pred ccccCcHHHHHHHHHHcChHHHHHHHHHcCCCCCeeEEEcCccCCHHHHHHHHhhcccccccC-CccccEEEe-cCCCCc
Confidence 679999999999999999999999999999999999999999999999999999999887776 455555555 455688
Q ss_pred CCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEE-EEEeCCHHHHHHHHHHHHHcCC
Q 010971 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLI-YANEMKASRLKSLTANLHRMGV 228 (496)
Q Consensus 150 ~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V-~A~D~s~~rl~~l~~nl~r~g~ 228 (496)
..+++|..|+|++||.+||+++.+|+|+||++||||||||||||+|||++|.+.|.+ +|+|+++.|++.+.+|++|+|+
T Consensus 128 ~~~~~~~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~ 207 (355)
T COG0144 128 GRLPEFAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV 207 (355)
T ss_pred ccChhhhceEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999986655 9999999999999999999999
Q ss_pred CeEEEEecCCCCCccccCCC-CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcE
Q 010971 229 TNTIVCNYDGNELPKVLGLN-TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307 (496)
Q Consensus 229 ~nv~v~~~D~~~~~~~~~~~-~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~ 307 (496)
.|+.+++.|++.++...... .||+||+||||||+|+++|||+++|.+++.++..++.+|++||.+|+++| ||||+
T Consensus 208 ~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~l----k~GG~ 283 (355)
T COG0144 208 RNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLL----KPGGV 283 (355)
T ss_pred CceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhc----CCCCE
Confidence 99999999998886655333 49999999999999999999999999999999999999999999999998 99999
Q ss_pred EEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEec
Q 010971 308 IVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383 (496)
Q Consensus 308 LVYSTCSi~~eENE~vV~~~L~~~-~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~ 383 (496)
|||||||++++|||+||.+||+++ ++++++....++. ++..+ . +....++|+|||.|.+||||+|+|+|.
T Consensus 284 LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~~~~~~~~-~~~~~----~-~~~~~~~r~~p~~~~~dGFFia~l~k~ 354 (355)
T COG0144 284 LVYSTCSLTPEENEEVVERFLERHPDFELEPVRLPWGP-LFEGL----G-SELGKTRRLYPHVHGTDGFFIAKLRKK 354 (355)
T ss_pred EEEEccCCchhcCHHHHHHHHHhCCCceeecccccccc-ccccc----c-cccCCeEEECCCCCCCCCeEEEEEEeC
Confidence 999999999999999999999987 8899887655433 22111 1 345678999999998899999999986
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-67 Score=560.13 Aligned_cols=300 Identities=37% Similarity=0.596 Sum_probs=269.4
Q ss_pred hcChHHHHHHHHHhCCH-HHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEecC---CC
Q 010971 72 YGYNEFLIGALVEMFPP-VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDS---QV 147 (496)
Q Consensus 72 y~~p~wl~~~l~~~~~~-~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~~---~~ 147 (496)
..+|.|++++|..+||. +++.+|+++++.++|.+||||++|++++++.+.|.+.|+.++|+ +|++.|+++... ..
T Consensus 2 ~~lP~~fv~~~~~~lg~~ee~~~~l~a~~~~~~~~lRvN~lK~~~~~~~~~L~~~g~~~~~~-p~~~~g~~~~~~~~~~~ 80 (470)
T PRK11933 2 VYLPDAFLTQMREAMPSHLSMDDFIAACQRPLRRSIRVNTLKISVADFLQLMAPYGWTLTPI-PWCEEGFWIERDDEDAL 80 (470)
T ss_pred CcChHHHHHHHHHHhCCcHHHHHHHHHcCCCCCeEEEEcCCcCCHHHHHHHHHhCCCceeEC-CCCCceEEEecCccccC
Confidence 35899999999999997 68999999999999999999999999999999999999999998 899999987543 23
Q ss_pred CCCCCcccccccEEEeCCcchhHHHhc--CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 010971 148 PIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (496)
Q Consensus 148 ~i~~~~~~~~G~~~iQd~sS~l~v~~L--~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r 225 (496)
.++.+++|..|+|++||+|||+++.+| +|++|++||||||||||||+|||++|++.|.|+|||+++.|++.+++|++|
T Consensus 81 ~~~~~~~~~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r 160 (470)
T PRK11933 81 PLGNTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISR 160 (470)
T ss_pred CcccChHHHCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 588999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 010971 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305 (496)
Q Consensus 226 ~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpG 305 (496)
+|+.|+.+++.|++.+...+. ..||+||+||||||+|+++|+|+++|.|+++++..++.+|++||.+|+++| |||
T Consensus 161 ~G~~nv~v~~~D~~~~~~~~~-~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~L----kpG 235 (470)
T PRK11933 161 CGVSNVALTHFDGRVFGAALP-ETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHAL----KPG 235 (470)
T ss_pred cCCCeEEEEeCchhhhhhhch-hhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHc----CCC
Confidence 999999999999988765442 679999999999999999999999999999999999999999999999997 999
Q ss_pred cEEEEEeCCCCCcCCHHHHHHHHHhC-C-cEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEec
Q 010971 306 GYIVYSTCSIMVTENEAVIDYALKKR-D-VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383 (496)
Q Consensus 306 G~LVYSTCSi~~eENE~vV~~~L~~~-~-~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~ 383 (496)
|+|||||||++++|||+||++||+++ + ++++++...+ +|+.. ......++|++||.+++||||+|+|+|.
T Consensus 236 G~LVYSTCT~~~eENE~vV~~~L~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~r~~P~~~~~dGfFiA~lrk~ 307 (470)
T PRK11933 236 GTLVYSTCTLNREENQAVCLWLKETYPDAVEFEPLGDLF--PGAEK------ALTEEGFLHVFPQIYDSEGFFVARLRKT 307 (470)
T ss_pred cEEEEECCCCCHHHHHHHHHHHHHHCCCcEEeccccccc--ccccc------ccCCCCeEEECCCCCCCcceeeEEEEec
Confidence 99999999999999999999999987 3 4555543211 12110 0123467999999999999999999997
Q ss_pred CC
Q 010971 384 SN 385 (496)
Q Consensus 384 ~~ 385 (496)
..
T Consensus 308 ~~ 309 (470)
T PRK11933 308 AS 309 (470)
T ss_pred CC
Confidence 54
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-64 Score=506.89 Aligned_cols=281 Identities=43% Similarity=0.665 Sum_probs=248.5
Q ss_pred HHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCccc-EEEecCCCCCCCCcccccccEEEeCCcchhHHH
Q 010971 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVG-LVVYDSQVPIGATPEYMAGFYMLQSASSFLPVM 172 (496)
Q Consensus 94 ~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~g-l~v~~~~~~i~~~~~~~~G~~~iQd~sS~l~v~ 172 (496)
+|++++.++|++||||++|++++++.+.|...|+.++++ +|.+.+ +.+.....++..++.|..|+|++||.+|++++.
T Consensus 1 il~~~n~~~~~~iRvN~~k~~~~~~~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~sS~l~~~ 79 (283)
T PF01189_consen 1 ILEANNCPPPVTIRVNTLKISREELLEELEEEGIQLEPI-PRSPDALRVIGKSPYSICSLPEFKNGLFYVQDESSQLVAL 79 (283)
T ss_dssp HHHHCTS--GEEEEE-TTTSSHHHHHHHHHHTTHEEEEE-TSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHHHHHHHHH
T ss_pred CccccCCCCCeEEEECcCcCCHHHHHHHHhhcccceEEc-ccccchhccccccccchhhchhhhCCcEEecccccccccc
Confidence 689999999999999999999999999999999999888 666666 345556678899999999999999999999999
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
+|.|++|+.||||||||||||+||+++|.+.|.|+|+|++..|+..+..|++++|+.++.+++.|++.+........||+
T Consensus 80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEE
T ss_pred cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999899887733332246999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhC-
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR- 331 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~- 331 (496)
||+||||||+|+++++|+++|.+++.++..++.+|++||.+|+++++..++|||+|||||||++++|||+||++||+++
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~ 239 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHP 239 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHST
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999985444499999999999999999999999999988
Q ss_pred CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEE
Q 010971 332 DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381 (496)
Q Consensus 332 ~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~ 381 (496)
+++++++......+|+..+ +....++|+|||.|++||||+|+|+
T Consensus 240 ~~~l~~~~~~~~~~~~~~~------~~~~~~~r~~P~~~~~dGFFiA~lr 283 (283)
T PF01189_consen 240 DFELVPIPLPEPPPGFKSY------PIGEGCLRILPHRHGTDGFFIAKLR 283 (283)
T ss_dssp SEEEECCESSTCEEESSGG------CTGGGSEEESTTTSSSSSEEEEEEE
T ss_pred CcEEEeccccccccccccc------cCCCCEEEeCCCCCCCCCEEEEEeC
Confidence 8999988766555555332 3456789999999999999999996
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-61 Score=513.04 Aligned_cols=302 Identities=26% Similarity=0.434 Sum_probs=271.5
Q ss_pred HhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEecC
Q 010971 66 LDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDS 145 (496)
Q Consensus 66 ~~l~~~y~~p~wl~~~l~~~~~~~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~~ 145 (496)
.+++..||||.||++.|.+.||.+++.++++++++++|+++|||+++++++++.+.|.+.|+.+++. +|++.++.+...
T Consensus 126 ~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~RvN~~k~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~ 204 (431)
T PRK14903 126 KELHLKYSHPKWLVNYWRSFLPEEAVLRIMEWNQEPLPTMLRVNSLAITREEVIKILAEEGTEAVPG-KHSPFSLIVRKL 204 (431)
T ss_pred hhhhhhhcCcHHHHHHHHHHcCHHHHHHHHHHhcCCCCeeEEeeCCcCCHHHHHHHHHHCCCeeEEC-CCCCceEEEcCC
Confidence 4688899999999999999999999999999999999999999999999999999999999999888 799999887553
Q ss_pred CCCCCCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 010971 146 QVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (496)
Q Consensus 146 ~~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r 225 (496)
..++..+++|..|+|++||.+|++++.+|++++|++|||+||||||||++++.++++.|.|+|+|+++.|++.+++|+++
T Consensus 205 ~~~~~~~~~~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r 284 (431)
T PRK14903 205 GVNMNDSRVIKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR 284 (431)
T ss_pred CCCcccChHHHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred cCCCeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 010971 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305 (496)
Q Consensus 226 ~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpG 305 (496)
+|+.++.+++.|+..++... .+.||+||+||||||+|+++++|+++|.++++++..++.+|++||.+|+++| +||
T Consensus 285 ~g~~~v~~~~~Da~~l~~~~-~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~L----kpG 359 (431)
T PRK14903 285 LKLSSIEIKIADAERLTEYV-QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLL----EKG 359 (431)
T ss_pred cCCCeEEEEECchhhhhhhh-hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhc----CCC
Confidence 99999999999998876433 3679999999999999999999999999999999999999999999999997 999
Q ss_pred cEEEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCc---CCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEE
Q 010971 306 GYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLD---FGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381 (496)
Q Consensus 306 G~LVYSTCSi~~eENE~vV~~~L~~~-~~~lv~~~~~---~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~ 381 (496)
|+|||||||++++|||+||.+||+++ +++++++... ++.+++ + ....+|++||. ++||||+|+|+
T Consensus 360 G~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~P~~-~~dGFf~a~L~ 428 (431)
T PRK14903 360 GILLYSTCTVTKEENTEVVKRFVYEQKDAEVIDIRDKLEEFEVEGI--W--------DGYGFLMLPDE-TLTPFYVSVLR 428 (431)
T ss_pred CEEEEEECCCChhhCHHHHHHHHHhCCCcEEecccccccccccccc--c--------CCCcEEECcCC-CCCcEEEEEEE
Confidence 99999999999999999999999876 7887765321 111221 0 01126999995 78999999999
Q ss_pred ecC
Q 010971 382 KMS 384 (496)
Q Consensus 382 K~~ 384 (496)
|.+
T Consensus 429 k~~ 431 (431)
T PRK14903 429 KMG 431 (431)
T ss_pred eCC
Confidence 863
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-61 Score=512.20 Aligned_cols=291 Identities=34% Similarity=0.526 Sum_probs=267.8
Q ss_pred HhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEecC
Q 010971 66 LDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDS 145 (496)
Q Consensus 66 ~~l~~~y~~p~wl~~~l~~~~~~~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~~ 145 (496)
.+++..||+|.||+++|.+.||.+++.+++++++.++|+++||||+|++++++.+.|...|+.++++ +|++.++.+...
T Consensus 141 ~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~ 219 (434)
T PRK14901 141 ERLAILHSFPDWLVKLWLEWLGLEEAEQLCKWFNQPPSLDLRINPLRTSLEEVQAALAEAGITATPI-PGLPQGLRLTGN 219 (434)
T ss_pred HHHHHHhCCcHHHHHHHHHHhCHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHCCCceEEC-CCCCCeEEecCC
Confidence 4588999999999999999999999999999999999999999999999999999999999999988 799999988643
Q ss_pred CCCCCCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 010971 146 QVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (496)
Q Consensus 146 ~~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r 225 (496)
...+..+++|..|+|++||.+|++++.+|++++|++|||+|||||+||++|+++|++.|.|+|+|+++.|++.+++|+++
T Consensus 220 ~~~~~~~~~f~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r 299 (434)
T PRK14901 220 PGSIRQLPGYEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQR 299 (434)
T ss_pred CCccccChHHhCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHH
Confidence 33578899999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred cCCCeEEEEecCCCCCcccc--CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 010971 226 MGVTNTIVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK 303 (496)
Q Consensus 226 ~g~~nv~v~~~D~~~~~~~~--~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lk 303 (496)
+|+.+|.+++.|+..++... ..+.||+||+||||||+|+++++|+++|.+++.++..++.+|.+||.+|+++| |
T Consensus 300 ~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l----k 375 (434)
T PRK14901 300 LGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLL----K 375 (434)
T ss_pred cCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhc----C
Confidence 99999999999998775321 13689999999999999999999999999999999999999999999999997 9
Q ss_pred CCcEEEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEe
Q 010971 304 SGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382 (496)
Q Consensus 304 pGG~LVYSTCSi~~eENE~vV~~~L~~~-~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K 382 (496)
|||+|||||||++++|||+||.+||+++ ++++++. + .+++||.|++||||+|+|+|
T Consensus 376 pgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~~~-------~----------------~~~~P~~~~~dGfF~a~l~k 432 (434)
T PRK14901 376 PGGTLVYATCTLHPAENEAQIEQFLARHPDWKLEPP-------K----------------QKIWPHRQDGDGFFMAVLRK 432 (434)
T ss_pred CCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEecCC-------C----------------CccCCCCCCCCcEEEEEEEe
Confidence 9999999999999999999999999987 5665431 0 12799999999999999998
Q ss_pred cC
Q 010971 383 MS 384 (496)
Q Consensus 383 ~~ 384 (496)
.+
T Consensus 433 ~~ 434 (434)
T PRK14901 433 KS 434 (434)
T ss_pred CC
Confidence 64
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-59 Score=492.38 Aligned_cols=297 Identities=31% Similarity=0.451 Sum_probs=260.9
Q ss_pred hHhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEec
Q 010971 65 KLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYD 144 (496)
Q Consensus 65 ~~~l~~~y~~p~wl~~~l~~~~~~~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~ 144 (496)
..+++.+||+|.||++.|...|+ +++.+++++++.++|+++|||+++++++++.+.|...|+.+.+. +|.+.++.+.
T Consensus 128 ~~~l~~~~s~P~wl~~~~~~~~~-~~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~- 204 (426)
T TIGR00563 128 FNALDARYLHPEWLVKRLQKAYP-GQWQSICEANNQRPPMWLRINRTKHSRDEWLALLAEAGMKGFPH-DLAPDAVRLE- 204 (426)
T ss_pred hHhHHHHcCCCHHHHHHHHHHhH-HHHHHHHHHhCCCCCeEEEEcCCcCCHHHHHHHHHhcCCceeeC-CCCCCeEEEC-
Confidence 34689999999999999999995 56789999999999999999999999999999999999998887 7888888764
Q ss_pred CCCCCCCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q 010971 145 SQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224 (496)
Q Consensus 145 ~~~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~ 224 (496)
.+..+..+++|..|+|++||.+|++++.+|+|++|++|||||||||+||++++++++ .|.|+|+|+++.|++.+++|++
T Consensus 205 ~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~ 283 (426)
T TIGR00563 205 TPAAVHALPGFEEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLK 283 (426)
T ss_pred CCCCcccCchhhCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHH
Confidence 444588999999999999999999999999999999999999999999999999997 6899999999999999999999
Q ss_pred HcCCCe-EEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 010971 225 RMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK 303 (496)
Q Consensus 225 r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lk 303 (496)
++|+.. +.+..+|+...+.......||+||+||||||+|+++++|+++|.++++++..++.+|++||.+|+++| +
T Consensus 284 r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~L----k 359 (426)
T TIGR00563 284 RLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLL----K 359 (426)
T ss_pred HcCCCeEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc----C
Confidence 999972 33355666544322234679999999999999999999999999999999999999999999999987 9
Q ss_pred CCcEEEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEe
Q 010971 304 SGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382 (496)
Q Consensus 304 pGG~LVYSTCSi~~eENE~vV~~~L~~~-~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K 382 (496)
|||+|||||||++++|||+||.+||+++ ++.++..+.. +. ....++|++||.+++||||+|+|+|
T Consensus 360 pgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~---~~-----------~~~~~~~~~P~~~~~dGff~a~l~k 425 (426)
T TIGR00563 360 TGGTLVYATCSVLPEENSEQIKAFLQEHPDFPFEKTGTP---EQ-----------VRDGGLQILPHAEEGDGFFYAKLIK 425 (426)
T ss_pred CCcEEEEEeCCCChhhCHHHHHHHHHhCCCCeeccCCCc---cc-----------cCCCcEEECCCCCCCCCeEEEEEEe
Confidence 9999999999999999999999999987 5655432110 00 0124689999999999999999997
Q ss_pred c
Q 010971 383 M 383 (496)
Q Consensus 383 ~ 383 (496)
.
T Consensus 426 ~ 426 (426)
T TIGR00563 426 K 426 (426)
T ss_pred C
Confidence 3
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-56 Score=476.86 Aligned_cols=293 Identities=32% Similarity=0.490 Sum_probs=265.5
Q ss_pred hHhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEec
Q 010971 65 KLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYD 144 (496)
Q Consensus 65 ~~~l~~~y~~p~wl~~~l~~~~~~~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~ 144 (496)
..+++..||||.||+++|.+.|| +++.+|++++++++|++||||++|++++++.+.|.+.|+.+++. +|++.++.+.
T Consensus 134 ~~~~~~~~s~P~wl~~~~~~~~~-~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~- 210 (427)
T PRK10901 134 QADPVARYNHPSWLIKRLKKAYP-EQWQAILAANNQRPPMWLRVNRRHHSRDAYLALLAEAGIEAFPH-AVGPDAIRLE- 210 (427)
T ss_pred hhchHhHhcCCHHHHHHHHHHhH-HHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHhCCCceeec-CCCCCeEEEC-
Confidence 45789999999999999999996 67999999999999999999999999999999999999999988 7999998774
Q ss_pred CCCCCCCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q 010971 145 SQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224 (496)
Q Consensus 145 ~~~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~ 224 (496)
.+.++..+++|..|+|++||.+|++++.+|++++|++|||+|||||++|+++++++++ +.|+|+|+++.+++.+++|++
T Consensus 211 ~~~~~~~~~~~~~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~ 289 (427)
T PRK10901 211 TPVPVHQLPGFAEGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQ 289 (427)
T ss_pred CCCCcccCchhhCceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHH
Confidence 4456888999999999999999999999999999999999999999999999999865 899999999999999999999
Q ss_pred HcCCCeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 010971 225 RMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304 (496)
Q Consensus 225 r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkp 304 (496)
++|+. +.++++|+..++.......||+|++||||||+|+++++|+++|.+++.++..+..+|.++|.+|..+| +|
T Consensus 290 ~~g~~-~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~L----kp 364 (427)
T PRK10901 290 RLGLK-ATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLL----KP 364 (427)
T ss_pred HcCCC-eEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhc----CC
Confidence 99986 67889999876543334679999999999999999999999999999999999999999999999987 99
Q ss_pred CcEEEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEec
Q 010971 305 GGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383 (496)
Q Consensus 305 GG~LVYSTCSi~~eENE~vV~~~L~~~-~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~ 383 (496)
||+|||||||++++|||++|.++++++ ++++++... + ...++|++||.|++||||+|+|+|.
T Consensus 365 GG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~----~-------------~~~~~~~~P~~~~~dGff~a~l~k~ 427 (427)
T PRK10901 365 GGTLLYATCSILPEENEQQIKAFLARHPDAELLDTGT----P-------------QQPGRQLLPGEEDGDGFFYALLIKR 427 (427)
T ss_pred CCEEEEEeCCCChhhCHHHHHHHHHhCCCCEEecCCC----C-------------CCCceEECCCCCCCCCeEEEEEEEC
Confidence 999999999999999999999999886 688766421 0 0124799999999999999999874
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-57 Score=479.21 Aligned_cols=304 Identities=32% Similarity=0.495 Sum_probs=274.9
Q ss_pred hHhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEec
Q 010971 65 KLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYD 144 (496)
Q Consensus 65 ~~~l~~~y~~p~wl~~~l~~~~~~~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~ 144 (496)
..+++.+||||.||+++|.+.||.+++.+|+++++.++|+++|||++|++++++...|...|+.+.+. +|.+.++.+..
T Consensus 140 ~~~~~~~~~~P~w~~~~~~~~~g~~~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~ 218 (444)
T PRK14902 140 VKRLSIKYSHPVWLVKRWIDQYGEEKAEKILESLNEPPKASIRVNTLKISVEELIEKLEEEGYEVEES-LLSPEALVIEK 218 (444)
T ss_pred HHHHHHHhCChHHHHHHHHHHhCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCceeEEc-CCCCCeEEEeC
Confidence 35689999999999999999999999999999999999999999999999999999999999999888 89999988754
Q ss_pred CCCCCCCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q 010971 145 SQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224 (496)
Q Consensus 145 ~~~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~ 224 (496)
..+..+++|..|.|++||.+|++++.++.+++|++|||+|||||++|++++..+++.|.|+|+|+++.+++.+++|++
T Consensus 219 --~~~~~~~~~~~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~ 296 (444)
T PRK14902 219 --GNIAGTDLFKDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAK 296 (444)
T ss_pred --CCcccChHHhCceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 458899999999999999999999999999999999999999999999999998777899999999999999999999
Q ss_pred HcCCCeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 010971 225 RMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304 (496)
Q Consensus 225 r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkp 304 (496)
++|+.++.++++|+..++..+. +.||+||+||||||+|+++++|+++|.+++.++..++.+|.++|.+|+++| +|
T Consensus 297 ~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~L----kp 371 (444)
T PRK14902 297 RLGLTNIETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYL----KK 371 (444)
T ss_pred HcCCCeEEEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHc----CC
Confidence 9999999999999987654332 679999999999999999999999999999999999999999999999997 99
Q ss_pred CcEEEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEec
Q 010971 305 GGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383 (496)
Q Consensus 305 GG~LVYSTCSi~~eENE~vV~~~L~~~-~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~ 383 (496)
||+|||||||++++|||.||.++++++ +++++++..+. ++.. ..+....++|++||.|++||||+|+|+|.
T Consensus 372 GG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~r~~P~~~~~dGfF~a~l~k~ 443 (444)
T PRK14902 372 GGILVYSTCTIEKEENEEVIEAFLEEHPEFELVPLQHEK--PDEL------VYEVKDGYLQILPNDYGTDGFFIAKLRKK 443 (444)
T ss_pred CCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEecccccc--cccc------cccccCCeEEECCCCCCCCCeEEEEEEEC
Confidence 999999999999999999999999987 58888764332 1110 00123467999999999999999999986
Q ss_pred C
Q 010971 384 S 384 (496)
Q Consensus 384 ~ 384 (496)
+
T Consensus 444 ~ 444 (444)
T PRK14902 444 G 444 (444)
T ss_pred C
Confidence 4
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-55 Score=469.86 Aligned_cols=301 Identities=26% Similarity=0.385 Sum_probs=262.8
Q ss_pred hHhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEec
Q 010971 65 KLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYD 144 (496)
Q Consensus 65 ~~~l~~~y~~p~wl~~~l~~~~~~~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~ 144 (496)
..+++..||+|.||++.|...||.+++.+++++++.++|+++|||+++++++++.+.|...|+.+.+. +|. ++.+.
T Consensus 142 ~~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~~~~~~~~~~~l~~~~~~~~~~-~~~--~~~~~- 217 (445)
T PRK14904 142 AERLSLLYSHPEWLLERWIARYGEERTEAMLSYNNQAPLFGFRINRLKTTPEKFLAAPADASVTFEKS-GLP--NFFLS- 217 (445)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhChHHHHHHHHHhCCCCCceeEeCCCCCCHHHHHHHHHhCCCceEEc-Ccc--eEEEe-
Confidence 34588999999999999999999999999999999999999999999999999999999999987766 343 55443
Q ss_pred CCCCCCCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q 010971 145 SQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224 (496)
Q Consensus 145 ~~~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~ 224 (496)
.. .....+.|..|.|++||++|++++.+|++++|++|||+|||||++|+++++++++.|.|+|+|+++.|++.+++|++
T Consensus 218 ~~-~~~~~~~~~~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~ 296 (445)
T PRK14904 218 KD-FSLFEPFLKLGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHAS 296 (445)
T ss_pred cc-ccccChHHhCcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHH
Confidence 21 22333899999999999999999999999999999999999999999999999878899999999999999999999
Q ss_pred HcCCCeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 010971 225 RMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304 (496)
Q Consensus 225 r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkp 304 (496)
++|+.+|.+++.|+..++. ...||+|++||||||+|+++++|+++|.++++++..++.+|.+||.+|+++| +|
T Consensus 297 ~~g~~~v~~~~~Da~~~~~---~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~l----kp 369 (445)
T PRK14904 297 ALGITIIETIEGDARSFSP---EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLL----KP 369 (445)
T ss_pred HhCCCeEEEEeCccccccc---CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc----CC
Confidence 9999999999999987652 3679999999999999999999999999999999999999999999999997 99
Q ss_pred CcEEEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCC-CCCceEEEEEEe
Q 010971 305 GGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH-NMDGFFVAKLKK 382 (496)
Q Consensus 305 GG~LVYSTCSi~~eENE~vV~~~L~~~-~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~-~~dGFFvA~l~K 382 (496)
||+|||||||++++|||+||++||+++ ++++++..... ++ .|.. .+....++|++||.+ ++||||+|+|+|
T Consensus 370 gG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~l--~~--~~~~---~~~~~~~~~~~P~~~~~~dGfF~a~l~k 442 (445)
T PRK14904 370 GGVLVYATCSIEPEENELQIEAFLQRHPEFSAEPSPGSL--PE--PFHE---VAHPKGAILTLPGEHEGFDGGFAQRLRK 442 (445)
T ss_pred CcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEecccccc--cc--cccc---ccCCCCcEEECCCCCCCCCcEEEEEEEe
Confidence 999999999999999999999999987 67776543211 11 1110 011234689999987 889999999998
Q ss_pred cC
Q 010971 383 MS 384 (496)
Q Consensus 383 ~~ 384 (496)
..
T Consensus 443 ~~ 444 (445)
T PRK14904 443 NA 444 (445)
T ss_pred cC
Confidence 74
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=441.28 Aligned_cols=263 Identities=51% Similarity=0.733 Sum_probs=227.3
Q ss_pred EEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEecCCCCCCCCcccccccEEEeCCcchhHHHhcCCCCCCeEeec
Q 010971 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDM 185 (496)
Q Consensus 106 iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~~~~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDm 185 (496)
||||++|++++++.+.|.+.|+.+.+.. .+.++.+......++.+++|..|+|++||.+|++++.+|++++|++|||+
T Consensus 1 ~RvN~lk~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl 78 (264)
T TIGR00446 1 IRVNTLKISVADLLQRLENRGVTLIPWC--EEGFFEVNESPLPIGSTPEYLSGLYYIQEASSMIPPLALEPDPPERVLDM 78 (264)
T ss_pred CeecCCCCCHHHHHHHHHhCCCceeecC--CCceEEEeCCCCCcccChhHhCCeEEEECHHHHHHHHHhCCCCcCEEEEE
Confidence 6999999999999999999999876531 33344454344468999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcc
Q 010971 186 AAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVI 265 (496)
Q Consensus 186 cAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i 265 (496)
|||||+||++|++++++.|.|+|+|+++.|++.+++|++++|+.++.+++.|+..++... ..||+||+||||||+|++
T Consensus 79 ~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~--~~fD~Vl~D~Pcsg~G~~ 156 (264)
T TIGR00446 79 AAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAV--PKFDAILLDAPCSGEGVI 156 (264)
T ss_pred CCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhc--cCCCEEEEcCCCCCCccc
Confidence 999999999999999888999999999999999999999999999999999998775433 569999999999999999
Q ss_pred cCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCcCCC
Q 010971 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGR 344 (496)
Q Consensus 266 ~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~-~~~lv~~~~~~~~ 344 (496)
+++|+++|.++++++..++.+|++||.+|+.+| +|||+|||||||++++|||+||++||+++ ++.+++. .+.
T Consensus 157 ~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~l----kpgG~lvYstcs~~~~Ene~vv~~~l~~~~~~~~~~~---~~~ 229 (264)
T TIGR00446 157 RKDPSRKKNWSEEDIQEISALQKELIDSAFDAL----KPGGVLVYSTCSLEPEENEAVVDYLLEKRPDVVEELP---KGD 229 (264)
T ss_pred ccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhc----CCCCEEEEEeCCCChHHHHHHHHHHHHhCCCcEEecc---CCc
Confidence 999999999999999999999999999999997 99999999999999999999999999987 5655422 111
Q ss_pred CCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEe
Q 010971 345 QGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382 (496)
Q Consensus 345 ~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K 382 (496)
+++..+.. ......|+|++||.|++||||+|+|+|
T Consensus 230 ~~~~~~~~---~~~~~~~~r~~P~~~~~dGfF~a~l~k 264 (264)
T TIGR00446 230 EFFGANKG---KEEVKGALRVFPQIYDCEGFFVAKLRK 264 (264)
T ss_pred cccccccc---ccccCCeEEECCCCCCCCcEEEEEEEC
Confidence 11111110 012356899999999999999999986
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=347.42 Aligned_cols=255 Identities=31% Similarity=0.463 Sum_probs=207.1
Q ss_pred HHHhCC-HHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHH-----------HcC--CccCCCCcCCcccEEEec---
Q 010971 82 LVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLI-----------NRG--VNLDPLSKWSKVGLVVYD--- 144 (496)
Q Consensus 82 l~~~~~-~~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~-----------~~G--v~~~p~~~~~~~gl~v~~--- 144 (496)
..+.|. .+++..|++.+..+.|.++|+.........+...++ .+| ++.....+|++.++.+..
T Consensus 32 ~l~~f~~~~e~~~~~~~ir~~Lps~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~e~~~~~p~~p~~~a~~~~~~ 111 (375)
T KOG2198|consen 32 ALDHFDKEDEFGDFWETIRKPLPSTFRYTALVNNADALLSIFEEYEFESLKDRVIEGLKFEAPFELPWYPDNLAFEKDVK 111 (375)
T ss_pred HHhcCcchHHHHHHHHHHHhccchhhhHHHhccchHHHHHHHhhccchhhhhhhccccccCccccCCCCcccchhhhcCc
Confidence 555666 899999999999999999998766544444333222 234 322222378877664321
Q ss_pred -----CCCCCCCCc-----ccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCC---CcEEEEEeC
Q 010971 145 -----SQVPIGATP-----EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKN---TGLIYANEM 211 (496)
Q Consensus 145 -----~~~~i~~~~-----~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~---~g~V~A~D~ 211 (496)
...++...+ ++..|.|+.||++||+|+++|+++||++||||||||||||.+|.+.+.. .|.|+|||+
T Consensus 112 ~~~~r~~~~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~ 191 (375)
T KOG2198|consen 112 LDEIRKSPPLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDV 191 (375)
T ss_pred ccccccCCchhhcchHhhhhcccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEeccc
Confidence 112233333 3457999999999999999999999999999999999999988887653 469999999
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc-------CCCCcCEEEECCCCCCCCcccCCchhhcc-CCHHHHHHH
Q 010971 212 KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------GLNTVDRVLLDAPCSGTGVISKDESVKTS-KSLEDIQKC 283 (496)
Q Consensus 212 s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~-------~~~~fD~VLlDaPCSg~G~i~r~p~~k~~-~s~~~i~~l 283 (496)
+..|+..|+..+.++...++.+++.|+..+|... ....||+||||+||||.|+++++|+++-. |....-..|
T Consensus 192 d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L 271 (375)
T KOG2198|consen 192 DPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGL 271 (375)
T ss_pred CHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCC
Confidence 9999999999999998889999999988877652 23579999999999999999999999776 877777899
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhC--CcEEeecCC
Q 010971 284 SYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR--DVKLVPCGL 340 (496)
Q Consensus 284 ~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~--~~~lv~~~~ 340 (496)
..+|.+||.+++++| |+||+|||||||++|.|||+||+.+|+.. .+++++++.
T Consensus 272 ~~LQ~~iL~rgl~lL----k~GG~lVYSTCSLnpieNEaVV~~~L~~~~~~~~lv~~~~ 326 (375)
T KOG2198|consen 272 HALQLRILRRGLRLL----KVGGRLVYSTCSLNPIENEAVVQEALQKVGGAVELVDVSG 326 (375)
T ss_pred hHHHHHHHHHHHHHh----cCCCEEEEeccCCCchhhHHHHHHHHHHhcCcccceeecc
Confidence 999999999999997 99999999999999999999999999886 577877643
|
|
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=305.67 Aligned_cols=284 Identities=30% Similarity=0.416 Sum_probs=224.9
Q ss_pred CHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcc----CCC----CcCCcccEEEecCCCCCCCCcccccc
Q 010971 87 PPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL----DPL----SKWSKVGLVVYDSQVPIGATPEYMAG 158 (496)
Q Consensus 87 ~~~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~----~p~----~~~~~~gl~v~~~~~~i~~~~~~~~G 158 (496)
+...+.++.-....+.|.++|+||++..-++....|...++.. -|. .+.++ .+.++..+..+...+.|..|
T Consensus 115 ~~~~~~~l~~t~~~~~pr~vRINtlk~~~~e~~~~L~~e~~~~~~~l~p~~~~~D~~~~-~ll~~~~~n~i~~~~ly~~g 193 (413)
T KOG2360|consen 115 KVKSLRELKLTMKIPLPRYVRINTLKGTTDEALDYLDYEKWKMITELKPDEFYVDPHVE-NLIIFPPSNFIVEHELYKNG 193 (413)
T ss_pred hHHHHHHhhccCCCCCceeEEeecccCchhhhhhhhhhhhhhhhhhcCCcceeccccch-hhcccCCCcceeeccccccC
Confidence 4445555555444689999999999988888888887766651 111 00111 22233344457778999999
Q ss_pred cEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCC
Q 010971 159 FYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG 238 (496)
Q Consensus 159 ~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~ 238 (496)
++++||.+|++|+++|+|.+|.+|+|+||+||.||+|+|..|.|.|.|+|+|.++.|.+.+...+...|+.++.....|+
T Consensus 194 ~~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df 273 (413)
T KOG2360|consen 194 KFILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDF 273 (413)
T ss_pred ceEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred CCCccccCCCCcCEEEECCCCCCCCcccCCchhh--ccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 239 NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK--TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 239 ~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k--~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
...+.......+..||+||+|||+|+..+.-.+. -....+.+..|...|..++.+|+.+ ..--.|||||||++
T Consensus 274 ~~t~~~~~~~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~f-----p~~k~vvystcs~~ 348 (413)
T KOG2360|consen 274 LNTATPEKFRDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALTF-----PNLKRLVYSTCSLH 348 (413)
T ss_pred cCCCCcccccceeEEEeCCCCCCCccccceeeccCCCcccHHHHHHHHHHHHHHHHHHhcC-----Cchhheeeecchhh
Confidence 7643333336788999999999999988765554 3346688999999999999999985 34468999999999
Q ss_pred CcCCHHHHHHHHHhC--CcEEee--cCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEe
Q 010971 317 VTENEAVIDYALKKR--DVKLVP--CGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382 (496)
Q Consensus 317 ~eENE~vV~~~L~~~--~~~lv~--~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K 382 (496)
.+|||+||...|... .+.+.+ +...|...|...| +-.+.|+|..|....++|||+|.|.+
T Consensus 349 reene~vv~d~l~~~p~~~~l~~kK~~p~w~~rg~~~~------~~~e~~lr~~p~~~~~~gffva~fer 412 (413)
T KOG2360|consen 349 REENEQVVQEVLQQNPDAKRLAPKKVLPAWPHRGLSTF------SGAEHCLRASPKSTLTIGFFVALFER 412 (413)
T ss_pred hhhhhHHHHHHHhhChhHhhhchhhcchhhhhcCCccc------cccccceecccCCCCcceEEEEEeec
Confidence 999999999999765 344444 3333433444333 23467899999999999999999876
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=161.00 Aligned_cols=166 Identities=17% Similarity=0.208 Sum_probs=123.1
Q ss_pred CCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 010971 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT 229 (496)
Q Consensus 150 ~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~ 229 (496)
.-..++++|+|..|.....++..+ .+|.+|||+|||+|+.+++++ +.+...|+++|+|+..++.+++|+..+|+.
T Consensus 195 dl~~g~ktG~flDqr~~R~~~~~~---~~g~rVLDlfsgtG~~~l~aa--~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~ 269 (396)
T PRK15128 195 DIQGGHKTGYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSAL--MGGCSQVVSVDTSQEALDIARQNVELNKLD 269 (396)
T ss_pred ecccccccCcChhhHHHHHHHHHh---cCCCeEEEeccCCCHHHHHHH--hCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 345678899999997766555443 358999999999999987654 345569999999999999999999999985
Q ss_pred --eEEEEecCCCCCcccc--CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 010971 230 --NTIVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305 (496)
Q Consensus 230 --nv~v~~~D~~~~~~~~--~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpG 305 (496)
++.++++|+..+...+ ....||+|++|||+.... ...+.........++..|+++| +||
T Consensus 270 ~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~-------------k~~l~~~~~~y~~l~~~a~~lL----k~g 332 (396)
T PRK15128 270 LSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVEN-------------KSQLMGACRGYKDINMLAIQLL----NPG 332 (396)
T ss_pred CCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCC-------------hHHHHHHHHHHHHHHHHHHHHc----CCC
Confidence 6899999987653222 135799999999975432 2334444445677888899987 999
Q ss_pred cEEEEEeCCCCCc--CCHHHHHHHHHhC--CcEEee
Q 010971 306 GYIVYSTCSIMVT--ENEAVIDYALKKR--DVKLVP 337 (496)
Q Consensus 306 G~LVYSTCSi~~e--ENE~vV~~~L~~~--~~~lv~ 337 (496)
|.|+++|||-+.. +=.++|..+.... .++++.
T Consensus 333 G~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 333 GILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred eEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 9999999995544 3345555555443 455554
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-15 Score=158.39 Aligned_cols=157 Identities=18% Similarity=0.178 Sum_probs=124.9
Q ss_pred CcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-
Q 010971 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN- 230 (496)
Q Consensus 152 ~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n- 230 (496)
....++|+|..|..+...+...+. |.+|||+||-+||.|+|.|. ++...|+++|+|+..++.+++|++-+|+..
T Consensus 194 ~~g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~ 268 (393)
T COG1092 194 VDGLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNGLDGD 268 (393)
T ss_pred CCcccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcCCCcc
Confidence 446789999999988776655543 99999999999999987654 455699999999999999999999999853
Q ss_pred -EEEEecCCCCCccccC--CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcE
Q 010971 231 -TIVCNYDGNELPKVLG--LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307 (496)
Q Consensus 231 -v~v~~~D~~~~~~~~~--~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~ 307 (496)
+.++++|+..+-.... ...||+|++||| .+..++........-...|+..|+++| +|||+
T Consensus 269 ~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPP-------------sF~r~k~~~~~~~rdy~~l~~~~~~iL----~pgG~ 331 (393)
T COG1092 269 RHRFIVGDVFKWLRKAERRGEKFDLIILDPP-------------SFARSKKQEFSAQRDYKDLNDLALRLL----APGGT 331 (393)
T ss_pred ceeeehhhHHHHHHHHHhcCCcccEEEECCc-------------ccccCcccchhHHHHHHHHHHHHHHHc----CCCCE
Confidence 7899999877643332 248999999999 344555556667778889999999997 99999
Q ss_pred EEEEeCCCCCcCCH--HHHHHHHHh
Q 010971 308 IVYSTCSIMVTENE--AVIDYALKK 330 (496)
Q Consensus 308 LVYSTCSi~~eENE--~vV~~~L~~ 330 (496)
|+.||||-+..... ..|...+..
T Consensus 332 l~~~s~~~~~~~~~f~~~i~~a~~~ 356 (393)
T COG1092 332 LVTSSCSRHFSSDLFLEIIARAAAA 356 (393)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHh
Confidence 99999998776654 344444443
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=154.76 Aligned_cols=163 Identities=15% Similarity=0.134 Sum_probs=121.5
Q ss_pred CCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-
Q 010971 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT- 229 (496)
Q Consensus 151 ~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~- 229 (496)
-+...++|.|..|.....++..+. .|.+|||+|||+|+.+++++.. +...|+++|+|+..++.+++|+..+|+.
T Consensus 514 ~~~~~~tG~flDqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~ 588 (702)
T PRK11783 514 LTDYLDTGLFLDHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSG 588 (702)
T ss_pred cCCCCcceECHHHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence 345677899999987766655443 4889999999999999988864 4457999999999999999999999986
Q ss_pred -eEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEE
Q 010971 230 -NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI 308 (496)
Q Consensus 230 -nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~L 308 (496)
++.+++.|+.++...+ ...||+|++|||+.+.+- ...++......+..|+..+.++| +|||.|
T Consensus 589 ~~v~~i~~D~~~~l~~~-~~~fDlIilDPP~f~~~~-----------~~~~~~~~~~~y~~l~~~a~~lL----~~gG~l 652 (702)
T PRK11783 589 RQHRLIQADCLAWLKEA-REQFDLIFIDPPTFSNSK-----------RMEDSFDVQRDHVALIKDAKRLL----RPGGTL 652 (702)
T ss_pred cceEEEEccHHHHHHHc-CCCcCEEEECCCCCCCCC-----------ccchhhhHHHHHHHHHHHHHHHc----CCCCEE
Confidence 6899999987653222 368999999999876531 11112233445677888888886 999999
Q ss_pred EEEeCCCCCcCCHHHHHHHHHhCCcEEeec
Q 010971 309 VYSTCSIMVTENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 309 VYSTCSi~~eENE~vV~~~L~~~~~~lv~~ 338 (496)
++++|+-..... ..++...++.+..+
T Consensus 653 ~~~~~~~~~~~~----~~~~~~~g~~~~~i 678 (702)
T PRK11783 653 YFSNNKRGFKMD----EEGLAKLGLKAEEI 678 (702)
T ss_pred EEEeCCccCChh----HHHHHhCCCeEEEE
Confidence 999999766543 34444545544443
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-13 Score=128.97 Aligned_cols=138 Identities=27% Similarity=0.320 Sum_probs=114.2
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccC
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~ 246 (496)
..+....|.|++|++++|+|||+|+.|+.++ ++.+.++|+|+|.++.+++.+++|+.++|++|+.++.+|+-......
T Consensus 23 Ral~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~- 100 (187)
T COG2242 23 RALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL- 100 (187)
T ss_pred HHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC-
Confidence 4566677899999999999999999999999 67788999999999999999999999999999999999997654323
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~ 326 (496)
..||+|++- |.|- ...||+.++..| +|||+||...-+ .||+...-.
T Consensus 101 -~~~daiFIG----Gg~~----------------------i~~ile~~~~~l----~~ggrlV~nait---lE~~~~a~~ 146 (187)
T COG2242 101 -PSPDAIFIG----GGGN----------------------IEEILEAAWERL----KPGGRLVANAIT---LETLAKALE 146 (187)
T ss_pred -CCCCEEEEC----CCCC----------------------HHHHHHHHHHHc----CcCCeEEEEeec---HHHHHHHHH
Confidence 379999983 2221 245788999887 999999985444 488888888
Q ss_pred HHHhCCc-EEeecCC
Q 010971 327 ALKKRDV-KLVPCGL 340 (496)
Q Consensus 327 ~L~~~~~-~lv~~~~ 340 (496)
.+++.++ +++.+.+
T Consensus 147 ~~~~~g~~ei~~v~i 161 (187)
T COG2242 147 ALEQLGGREIVQVQI 161 (187)
T ss_pred HHHHcCCceEEEEEe
Confidence 8888887 7776643
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.1e-14 Score=120.97 Aligned_cols=116 Identities=20% Similarity=0.236 Sum_probs=91.5
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
|.+|||+|||+|..+++++... ...++++|+++..++.++.|+...++ .++.+++.|+..+...+....||.|++||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence 6799999999999999998885 57999999999999999999999998 46999999998876445568999999999
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
|+......... .......++.++.++| +|||.+++.+|.
T Consensus 79 P~~~~~~~~~~--------------~~~~~~~~~~~~~~~L----~~gG~~~~~~~~ 117 (117)
T PF13659_consen 79 PYGPRSGDKAA--------------LRRLYSRFLEAAARLL----KPGGVLVFITPA 117 (117)
T ss_dssp STTSBTT------------------GGCHHHHHHHHHHHHE----EEEEEEEEEEEG
T ss_pred CCccccccchh--------------hHHHHHHHHHHHHHHc----CCCeEEEEEeCC
Confidence 98754211111 1114557788998887 999999999874
|
... |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=130.59 Aligned_cols=142 Identities=18% Similarity=0.215 Sum_probs=104.1
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC-ccccCCCCcCEEEEC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~-~~~~~~~~fD~VLlD 256 (496)
++.+|||+|||+|..++.++..+++ ..|+++|+|+..++.++.|+..+|+ .+++.|.... +... .+.||+|++|
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~-~~v~~vDis~~al~~A~~N~~~~~~---~~~~~D~~~~l~~~~-~~~fDlVv~N 160 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDG-IELHAADIDPAAVRCARRNLADAGG---TVHEGDLYDALPTAL-RGRVDILAAN 160 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCC---EEEEeechhhcchhc-CCCEeEEEEC
Confidence 3468999999999999999987653 5899999999999999999998874 5677787543 2211 2579999999
Q ss_pred CCCCCCCcccC-CchhhccCCHHHH---HHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCC
Q 010971 257 APCSGTGVISK-DESVKTSKSLEDI---QKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332 (496)
Q Consensus 257 aPCSg~G~i~r-~p~~k~~~s~~~i---~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~ 332 (496)
|||..++.+.. .|++++......+ ......++.++..|.++| +|||.+++.+.. ++..-|..++++++
T Consensus 161 PPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L----~~gG~l~l~~~~----~~~~~v~~~l~~~g 232 (251)
T TIGR03704 161 APYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWL----APGGHLLVETSE----RQAPLAVEAFARAG 232 (251)
T ss_pred CCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhc----CCCCEEEEEECc----chHHHHHHHHHHCC
Confidence 99998887654 5555543332222 134567888999999887 999999997653 23333444555544
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-12 Score=126.32 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=109.6
Q ss_pred ccEEEeCCcchhHHHh---cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEE
Q 010971 158 GFYMLQSASSFLPVMA---LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVC 234 (496)
Q Consensus 158 G~~~iQd~sS~l~v~~---L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~ 234 (496)
|.|..|..+ .+.+.. +.+.++.+|||+|||+|..+..++.. +.+.|+++|+++.+++.++.|+..+|+ ++.++
T Consensus 14 g~~~p~~ds-~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~ 89 (223)
T PRK14967 14 GVYRPQEDT-QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGV-DVDVR 89 (223)
T ss_pred CCcCCCCcH-HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEE
Confidence 556666544 333333 34678899999999999999988875 235899999999999999999999987 57788
Q ss_pred ecCCCCCccccCCCCcCEEEECCCC---CCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 235 NYDGNELPKVLGLNTVDRVLLDAPC---SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 235 ~~D~~~~~~~~~~~~fD~VLlDaPC---Sg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
+.|.... +....||.|++|||+ +..+...+.|...|....+.. ..+..++..+.++| +|||+|++.
T Consensus 90 ~~d~~~~---~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~a~~~L----k~gG~l~~~ 158 (223)
T PRK14967 90 RGDWARA---VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGR----AVLDRLCDAAPALL----APGGSLLLV 158 (223)
T ss_pred ECchhhh---ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHH----HHHHHHHHHHHHhc----CCCcEEEEE
Confidence 8887653 223689999999874 444444555555554332221 33466888888886 999999986
Q ss_pred eCCCCCcCCHHHHHHHHHhCCcE
Q 010971 312 TCSIMVTENEAVIDYALKKRDVK 334 (496)
Q Consensus 312 TCSi~~eENE~vV~~~L~~~~~~ 334 (496)
+.++. +-..+-..++..++.
T Consensus 159 ~~~~~---~~~~~~~~l~~~g~~ 178 (223)
T PRK14967 159 QSELS---GVERTLTRLSEAGLD 178 (223)
T ss_pred Eeccc---CHHHHHHHHHHCCCC
Confidence 55543 222233445555543
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.8e-14 Score=141.97 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=104.5
Q ss_pred CCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 010971 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT 229 (496)
Q Consensus 150 ~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~ 229 (496)
.-+.+.++|+|..|.....++.... .|.+|||+||-+||+|++.+. ++...|+++|.|...++.+++|+..+|+.
T Consensus 98 ~l~~gqktGlFlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~ 172 (286)
T PF10672_consen 98 DLTDGQKTGLFLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLD 172 (286)
T ss_dssp ESSSSSSTSS-GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-C
T ss_pred EcCCCCcceEcHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 3345678999999999887766553 488999999999999987553 45558999999999999999999999975
Q ss_pred --eEEEEecCCCCCccc-cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Q 010971 230 --NTIVCNYDGNELPKV-LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (496)
Q Consensus 230 --nv~v~~~D~~~~~~~-~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG 306 (496)
.+.++..|+..+-.. ...+.||+|++|||...-| .+. +..-+.+|+..|+++| +|||
T Consensus 173 ~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~----------~~~------~~~~y~~L~~~a~~ll----~~gG 232 (286)
T PF10672_consen 173 LDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKS----------KFD------LERDYKKLLRRAMKLL----KPGG 232 (286)
T ss_dssp CTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESS----------TCE------HHHHHHHHHHHHHHTE----EEEE
T ss_pred ccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCC----------HHH------HHHHHHHHHHHHHHhc----CCCC
Confidence 588999998664221 1246899999999965422 111 1244678899999987 9999
Q ss_pred EEEEEeCCCCCcCC
Q 010971 307 YIVYSTCSIMVTEN 320 (496)
Q Consensus 307 ~LVYSTCSi~~eEN 320 (496)
.|+.||||-....+
T Consensus 233 ~l~~~scs~~i~~~ 246 (286)
T PF10672_consen 233 LLLTCSCSHHISPD 246 (286)
T ss_dssp EEEEEE--TTS-HH
T ss_pred EEEEEcCCcccCHH
Confidence 99999999877654
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.3e-12 Score=126.58 Aligned_cols=234 Identities=15% Similarity=0.117 Sum_probs=139.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCC-CHHHH---HHHHH--HcCCccCCCCcCCc-ccEEEecCCCC
Q 010971 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKT-RRRDL---ADVLI--NRGVNLDPLSKWSK-VGLVVYDSQVP 148 (496)
Q Consensus 76 ~wl~~~l~~~~~~~e~~~~lea~~~~~P~~iRvNtlk~-~~~~l---~~~L~--~~Gv~~~p~~~~~~-~gl~v~~~~~~ 148 (496)
.|+...|.. +..++..++.......+.+++.|..+. +.+++ .+.+. ..|.++..+..+.. .+..+..+
T Consensus 9 ~~~~~~l~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~g~~~f~~~~~~~~--- 83 (275)
T PRK09328 9 REATARLAS--PRLDAELLLAHVLGLSRTDLLLNPEEELTPEELERFRALVARRAAGEPLQYILGEAEFWGLDFKVS--- 83 (275)
T ss_pred HHHHHHHhC--cHHHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHcCCCHHHHceeceEcCcEEEEC---
Confidence 444555544 667788888888777777888876554 43332 22222 23443322100000 11111111
Q ss_pred CCCCcccccccEEEeCCcchhHHH---hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 010971 149 IGATPEYMAGFYMLQSASSFLPVM---ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (496)
Q Consensus 149 i~~~~~~~~G~~~iQd~sS~l~v~---~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r 225 (496)
.|.++.....-.++-. .+...++.+|||+|||+|..+..++..++ ...|+++|+++..++.++.|+..
T Consensus 84 --------~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~ 154 (275)
T PRK09328 84 --------PGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKH 154 (275)
T ss_pred --------CCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHh
Confidence 1112111111112211 23456788999999999999999998874 47999999999999999999984
Q ss_pred cCCCeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCccc-CCchhhccCCHHHH---HHHHHHHHHHHHHHHHhhhhc
Q 010971 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVIS-KDESVKTSKSLEDI---QKCSYLQKQLILAAIDMVDAN 301 (496)
Q Consensus 226 ~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~-r~p~~k~~~s~~~i---~~l~~lQ~~LL~~A~~~l~~~ 301 (496)
....++.++..|..... ..+.||+|++||||...+.+. -.++++..-....+ ......+..++..+.++|
T Consensus 155 ~~~~~i~~~~~d~~~~~---~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~L--- 228 (275)
T PRK09328 155 GLGARVEFLQGDWFEPL---PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYL--- 228 (275)
T ss_pred CCCCcEEEEEccccCcC---CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhc---
Confidence 44457889999875432 136899999999998877654 23333311111111 112345677888888886
Q ss_pred CCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcE
Q 010971 302 SKSGGYIVYSTCSIMVTENEAVIDYALKKRDVK 334 (496)
Q Consensus 302 lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~ 334 (496)
+|||++++.+ .. ...+.+..++...++.
T Consensus 229 -k~gG~l~~e~-g~---~~~~~~~~~l~~~gf~ 256 (275)
T PRK09328 229 -KPGGWLLLEI-GY---DQGEAVRALLAAAGFA 256 (275)
T ss_pred -ccCCEEEEEE-Cc---hHHHHHHHHHHhCCCc
Confidence 9999998843 22 1223455566655543
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=134.58 Aligned_cols=121 Identities=21% Similarity=0.274 Sum_probs=97.4
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
++.+++|++|||.|||+|+.++.++. + ...|+++|+++.++..++.|++.+|+.++.+...|+..++.. .+.||.
T Consensus 177 l~~~~~g~~vLDp~cGtG~~lieaa~-~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~--~~~~D~ 251 (329)
T TIGR01177 177 LARVTEGDRVLDPFCGTGGFLIEAGL-M--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS--SESVDA 251 (329)
T ss_pred HhCCCCcCEEEECCCCCCHHHHHHHH-h--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc--cCCCCE
Confidence 34678999999999999999876544 3 368999999999999999999999999888899999987643 378999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
|++||||........ ..+..++.++|..+.+.| +|||+++|.+++-
T Consensus 252 Iv~dPPyg~~~~~~~-------------~~~~~l~~~~l~~~~r~L----k~gG~lv~~~~~~ 297 (329)
T TIGR01177 252 IATDPPYGRSTTAAG-------------DGLESLYERSLEEFHEVL----KSEGWIVYAVPTR 297 (329)
T ss_pred EEECCCCcCcccccC-------------CchHHHHHHHHHHHHHHc----cCCcEEEEEEcCC
Confidence 999999864322111 123456778898888876 9999999998875
|
This family is found exclusively in the Archaea. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-12 Score=120.56 Aligned_cols=154 Identities=15% Similarity=0.124 Sum_probs=110.2
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccC
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~ 246 (496)
+.+....+...++.+|||+|||+|..+..++... ..|+++|+++..++.+++|+...++ ++.+...|.....
T Consensus 8 ~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~---- 79 (179)
T TIGR00537 8 SLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV---- 79 (179)
T ss_pred HHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc----
Confidence 4555566666778899999999999999888753 2899999999999999999998887 5788888876543
Q ss_pred CCCcCEEEECCCCCCCC-cccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHH
Q 010971 247 LNTVDRVLLDAPCSGTG-VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G-~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~ 325 (496)
.+.||.|++++|+.... ....++...+.+.... .....+..+|..+.++| +|||.+++++++.. +...+.
T Consensus 80 ~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~L----k~gG~~~~~~~~~~---~~~~~~ 150 (179)
T TIGR00537 80 RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGK--DGRKVIDRFLDELPEIL----KEGGRVQLIQSSLN---GEPDTF 150 (179)
T ss_pred CCcccEEEECCCCCCCcchhcccchhhhhhhcCC--chHHHHHHHHHhHHHhh----CCCCEEEEEEeccC---ChHHHH
Confidence 25899999999985332 2222222211111000 11234567788888876 99999999987764 456667
Q ss_pred HHHHhCCcEEee
Q 010971 326 YALKKRDVKLVP 337 (496)
Q Consensus 326 ~~L~~~~~~lv~ 337 (496)
.+|++.++.+..
T Consensus 151 ~~l~~~gf~~~~ 162 (179)
T TIGR00537 151 DKLDERGFRYEI 162 (179)
T ss_pred HHHHhCCCeEEE
Confidence 777777766544
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.9e-12 Score=120.59 Aligned_cols=138 Identities=20% Similarity=0.325 Sum_probs=104.5
Q ss_pred hhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccC
Q 010971 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 168 ~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~ 246 (496)
.+....+.+.+|.+|||+|||+|..++.++..++..+.|+++|+++.+++.+++|+..+|+ .++.++..|+..+....
T Consensus 30 ~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~- 108 (198)
T PRK00377 30 ALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI- 108 (198)
T ss_pred HHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc-
Confidence 4444567888999999999999999999998887678999999999999999999999994 67888888887643222
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~ 326 (496)
...||+|+++.. .. ....+|..+.++| +|||+||+.+|++ ++...+..
T Consensus 109 ~~~~D~V~~~~~---~~----------------------~~~~~l~~~~~~L----kpgG~lv~~~~~~---~~~~~~~~ 156 (198)
T PRK00377 109 NEKFDRIFIGGG---SE----------------------KLKEIISASWEII----KKGGRIVIDAILL---ETVNNALS 156 (198)
T ss_pred CCCCCEEEECCC---cc----------------------cHHHHHHHHHHHc----CCCcEEEEEeecH---HHHHHHHH
Confidence 257999998531 10 1134677777776 9999999988865 44555566
Q ss_pred HHHhCC--cEEeec
Q 010971 327 ALKKRD--VKLVPC 338 (496)
Q Consensus 327 ~L~~~~--~~lv~~ 338 (496)
.|++.+ ++++.+
T Consensus 157 ~l~~~g~~~~~~~~ 170 (198)
T PRK00377 157 ALENIGFNLEITEV 170 (198)
T ss_pred HHHHcCCCeEEEEE
Confidence 666665 344444
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-12 Score=128.90 Aligned_cols=153 Identities=20% Similarity=0.223 Sum_probs=118.1
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCcccc
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVL 245 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~ 245 (496)
++|.+....+....+|||+|||.|..++.+|+...+ ..|+++|+++...+.+++|++.+++.. +.+++.|...+.+..
T Consensus 33 aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~ 111 (248)
T COG4123 33 AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL 111 (248)
T ss_pred HHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc
Confidence 456566666667999999999999999999998765 899999999999999999999999864 999999999887666
Q ss_pred CCCCcCEEEECCCCCCCCcc-cCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHH
Q 010971 246 GLNTVDRVLLDAPCSGTGVI-SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324 (496)
Q Consensus 246 ~~~~fD~VLlDaPCSg~G~i-~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV 324 (496)
...+||.|+|+||+.-.|.. ..+|.-...+.. ....-.+++..|..+| ||||++.+ +++.|.-.-+
T Consensus 112 ~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e-----~~~~le~~i~~a~~~l----k~~G~l~~----V~r~erl~ei 178 (248)
T COG4123 112 VFASFDLIICNPPYFKQGSRLNENPLRAIARHE-----ITLDLEDLIRAAAKLL----KPGGRLAF----VHRPERLAEI 178 (248)
T ss_pred cccccCEEEeCCCCCCCccccCcChhhhhhhhh-----hcCCHHHHHHHHHHHc----cCCCEEEE----EecHHHHHHH
Confidence 55679999999999988876 333322221111 1112245788888886 99999987 6777777666
Q ss_pred HHHHHhCCc
Q 010971 325 DYALKKRDV 333 (496)
Q Consensus 325 ~~~L~~~~~ 333 (496)
-..+.+.++
T Consensus 179 ~~~l~~~~~ 187 (248)
T COG4123 179 IELLKSYNL 187 (248)
T ss_pred HHHHHhcCC
Confidence 666766543
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.9e-12 Score=125.96 Aligned_cols=141 Identities=15% Similarity=0.186 Sum_probs=101.7
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
+.++.+|||+|||+|..++.++...++ ..|+|+|+|+..++.++.|+.++|+. ++.+++.|+... +....||.|+
T Consensus 119 ~~~~~~vLDlG~GsG~i~~~la~~~~~-~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~---~~~~~fD~Iv 194 (284)
T TIGR03533 119 PEPVKRILDLCTGSGCIAIACAYAFPE-AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA---LPGRKYDLIV 194 (284)
T ss_pred cCCCCEEEEEeCchhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc---cCCCCccEEE
Confidence 345679999999999999999987653 69999999999999999999999985 589999997542 2235799999
Q ss_pred ECCCCCCCCcccCCc-hhhccCCHHHH----HHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 010971 255 LDAPCSGTGVISKDE-SVKTSKSLEDI----QKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 255 lDaPCSg~G~i~r~p-~~k~~~s~~~i----~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~ 329 (496)
+||||...+.+..-+ ++. ..+... ..-...++.++..+.+.| +|||+|+.-+.. ..+.|...+.
T Consensus 195 ~NPPy~~~~~~~~l~~~~~--~ep~~al~gg~dGl~~~~~il~~a~~~L----~~gG~l~~e~g~-----~~~~v~~~~~ 263 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYH--HEPELALASGEDGLDLVRRILAEAADHL----NENGVLVVEVGN-----SMEALEEAYP 263 (284)
T ss_pred ECCCCCCccchhhCCHhhh--cCHHHHhcCCCcHHHHHHHHHHHHHHhc----CCCCEEEEEECc-----CHHHHHHHHH
Confidence 999998776554322 221 111111 012246678899998886 999999865442 2234555554
Q ss_pred hC
Q 010971 330 KR 331 (496)
Q Consensus 330 ~~ 331 (496)
..
T Consensus 264 ~~ 265 (284)
T TIGR03533 264 DV 265 (284)
T ss_pred hC
Confidence 43
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.9e-12 Score=126.49 Aligned_cols=140 Identities=24% Similarity=0.296 Sum_probs=94.3
Q ss_pred chhHHHh------cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCC
Q 010971 167 SFLPVMA------LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240 (496)
Q Consensus 167 S~l~v~~------L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~ 240 (496)
|-|++.+ +.+++|++|||+|||||.+|+++|.++...|.|+|+|+++..++.+...+... .||.++..|++.
T Consensus 115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~ 192 (293)
T PTZ00146 115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARY 192 (293)
T ss_pred cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccC
Confidence 5566555 35789999999999999999999999988899999999987776666655432 578888899864
Q ss_pred Ccc-ccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHH-HHHHHHHhhhhcCCCCcEEEEE---eCCC
Q 010971 241 LPK-VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQ-LILAAIDMVDANSKSGGYIVYS---TCSI 315 (496)
Q Consensus 241 ~~~-~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~-LL~~A~~~l~~~lkpGG~LVYS---TCSi 315 (496)
... .+....||+||+|.. .|+ |.+ ++.+|..+| ||||+|+.+ .|.-
T Consensus 193 p~~y~~~~~~vDvV~~Dva---------~pd----------------q~~il~~na~r~L----KpGG~~vI~ika~~id 243 (293)
T PTZ00146 193 PQKYRMLVPMVDVIFADVA---------QPD----------------QARIVALNAQYFL----KNGGHFIISIKANCID 243 (293)
T ss_pred hhhhhcccCCCCEEEEeCC---------Ccc----------------hHHHHHHHHHHhc----cCCCEEEEEEeccccc
Confidence 210 011257999999984 111 232 344566665 999999884 3333
Q ss_pred CCcCCHHHHH---HHHHhCCcEEee
Q 010971 316 MVTENEAVID---YALKKRDVKLVP 337 (496)
Q Consensus 316 ~~eENE~vV~---~~L~~~~~~lv~ 337 (496)
....-++++. ..|+..+|+.+.
T Consensus 244 ~g~~pe~~f~~ev~~L~~~GF~~~e 268 (293)
T PTZ00146 244 STAKPEVVFASEVQKLKKEGLKPKE 268 (293)
T ss_pred cCCCHHHHHHHHHHHHHHcCCceEE
Confidence 3233344422 335555555443
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.5e-12 Score=130.90 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=72.9
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEE
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
+...++.+|||+|||+|..++.+|.. ...|+|+|+++..++.+++|++.+|+.|+.+...|+..+.... .+.||.|
T Consensus 169 l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~-~~~~D~V 244 (315)
T PRK03522 169 VRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ-GEVPDLV 244 (315)
T ss_pred HHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc-CCCCeEE
Confidence 34346789999999999999999884 2689999999999999999999999988999999997664321 2479999
Q ss_pred EECCCCCCCC
Q 010971 254 LLDAPCSGTG 263 (496)
Q Consensus 254 LlDaPCSg~G 263 (496)
++|||++|.+
T Consensus 245 v~dPPr~G~~ 254 (315)
T PRK03522 245 LVNPPRRGIG 254 (315)
T ss_pred EECCCCCCcc
Confidence 9999988764
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.3e-12 Score=123.88 Aligned_cols=90 Identities=20% Similarity=0.288 Sum_probs=78.1
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~ 248 (496)
....++.+++|++|||+|||+|..|..|+.+.+..|.|+++|+++..++.+++|++++|+.|+.++.+|+...... ..
T Consensus 68 ~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~--~~ 145 (215)
T TIGR00080 68 MMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP--LA 145 (215)
T ss_pred HHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc--cC
Confidence 4455678899999999999999999999998876789999999999999999999999999999999998765322 26
Q ss_pred CcCEEEECCCCC
Q 010971 249 TVDRVLLDAPCS 260 (496)
Q Consensus 249 ~fD~VLlDaPCS 260 (496)
.||+|++++++.
T Consensus 146 ~fD~Ii~~~~~~ 157 (215)
T TIGR00080 146 PYDRIYVTAAGP 157 (215)
T ss_pred CCCEEEEcCCcc
Confidence 899999998753
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-11 Score=121.25 Aligned_cols=106 Identities=20% Similarity=0.323 Sum_probs=82.5
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc--cccCCCCcC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP--KVLGLNTVD 251 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~--~~~~~~~fD 251 (496)
+.+.+|.+|||+|||+|+.+.+++..++ .|.|+|+|+++.+++.+.++++.. .|+.++.+|+.... ..+ ...||
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l-~~~~D 143 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHV-VEKVD 143 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhc-cccCC
Confidence 6778999999999999999999999986 689999999999999988887754 67888889986521 111 25699
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
+|++|.+ +|+ ....+|..+.++| ||||+||.+
T Consensus 144 ~i~~d~~---------~p~---------------~~~~~L~~~~r~L----KpGG~lvI~ 175 (226)
T PRK04266 144 VIYQDVA---------QPN---------------QAEIAIDNAEFFL----KDGGYLLLA 175 (226)
T ss_pred EEEECCC---------Chh---------------HHHHHHHHHHHhc----CCCcEEEEE
Confidence 9998865 111 0123467777775 999999985
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-12 Score=110.48 Aligned_cols=110 Identities=16% Similarity=0.229 Sum_probs=84.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCC-CCCccccCCCCcCEEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDG-NELPKVLGLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~-~~~~~~~~~~~fD~VLl 255 (496)
||.+|||+|||+|..+..+++..+ ...|+|+|+|+..++.+++++...+. .++.+++.|+ .... ....||.|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD---FLEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT---TSSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc---cCCCCCEEEE
Confidence 689999999999999999999654 47899999999999999999977766 5799999999 2222 1267999998
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
+. .+...++ .. ..+.++|..+.+.| +|||+||++||
T Consensus 77 ~~-~~~~~~~----------------~~-~~~~~~l~~~~~~L----~pgG~lvi~~~ 112 (112)
T PF12847_consen 77 SG-FTLHFLL----------------PL-DERRRVLERIRRLL----KPGGRLVINTC 112 (112)
T ss_dssp CS-GSGGGCC----------------HH-HHHHHHHHHHHHHE----EEEEEEEEEE-
T ss_pred CC-Ccccccc----------------ch-hHHHHHHHHHHHhc----CCCcEEEEEEC
Confidence 54 1111011 11 34566788888876 99999999998
|
... |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-12 Score=120.89 Aligned_cols=124 Identities=21% Similarity=0.226 Sum_probs=95.5
Q ss_pred CCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc
Q 010971 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243 (496)
Q Consensus 164 d~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~ 243 (496)
|+++.+.+..+...++.+|||+|||+|..+++++...+ ...|+++|+++..++.++.|+..+++.++.+...|......
T Consensus 17 d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~ 95 (170)
T PF05175_consen 17 DAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP 95 (170)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC
T ss_pred CHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc
Confidence 45666666666666889999999999999999998764 35799999999999999999999999888899999865432
Q ss_pred ccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 244 ~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
...||+|+++||....+ ........+++..|.+.| +|||.|++..
T Consensus 96 ---~~~fD~Iv~NPP~~~~~-----------------~~~~~~~~~~i~~a~~~L----k~~G~l~lv~ 140 (170)
T PF05175_consen 96 ---DGKFDLIVSNPPFHAGG-----------------DDGLDLLRDFIEQARRYL----KPGGRLFLVI 140 (170)
T ss_dssp ---TTCEEEEEE---SBTTS-----------------HCHHHHHHHHHHHHHHHE----EEEEEEEEEE
T ss_pred ---ccceeEEEEccchhccc-----------------ccchhhHHHHHHHHHHhc----cCCCEEEEEe
Confidence 37899999999932211 112235577899998887 9999986543
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.1e-12 Score=124.68 Aligned_cols=122 Identities=20% Similarity=0.311 Sum_probs=96.8
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~ 248 (496)
..+..+.+.+|.+|||+|||+|-.+..++...+ .|.|+++|+|..+|..+++.+...|..++.++.+|+..+| ++++
T Consensus 42 ~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP--f~D~ 118 (238)
T COG2226 42 ALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP--FPDN 118 (238)
T ss_pred HHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC--CCCC
Confidence 344555566999999999999999999999987 7999999999999999999999999999999999999999 6779
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCH
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE 321 (496)
+||+|.+ +.|+ .++... .+.|.++.+.| ||||+++... ++.-.+.
T Consensus 119 sFD~vt~---~fgl------------------rnv~d~-~~aL~E~~RVl----KpgG~~~vle--~~~p~~~ 163 (238)
T COG2226 119 SFDAVTI---SFGL------------------RNVTDI-DKALKEMYRVL----KPGGRLLVLE--FSKPDNP 163 (238)
T ss_pred ccCEEEe---eehh------------------hcCCCH-HHHHHHHHHhh----cCCeEEEEEE--cCCCCch
Confidence 9999987 2222 122222 23578888876 9999876644 4434443
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=131.89 Aligned_cols=87 Identities=26% Similarity=0.292 Sum_probs=73.6
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc--cCCCCc
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--LGLNTV 250 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~--~~~~~f 250 (496)
.+.+.+|.+|||+|||+|..|+.+|... ..|+|+|+|+.+++.+++|+..+|+.|+.+..+|+...... +....|
T Consensus 292 ~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~f 368 (443)
T PRK13168 292 WLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGF 368 (443)
T ss_pred HhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCC
Confidence 3466789999999999999999998864 68999999999999999999999999999999998653211 223579
Q ss_pred CEEEECCCCCCC
Q 010971 251 DRVLLDAPCSGT 262 (496)
Q Consensus 251 D~VLlDaPCSg~ 262 (496)
|+|++|||++|.
T Consensus 369 D~Vi~dPPr~g~ 380 (443)
T PRK13168 369 DKVLLDPPRAGA 380 (443)
T ss_pred CEEEECcCCcCh
Confidence 999999998864
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=132.38 Aligned_cols=88 Identities=24% Similarity=0.205 Sum_probs=73.7
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC-ccc-cCCCC
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKV-LGLNT 249 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~-~~~-~~~~~ 249 (496)
..+.+.++++|||+|||+|..++.+|... ..|+|+|+++..++.++.|+..+|+.|+.++.+|+..+ +.. .....
T Consensus 286 ~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 286 EALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQI 362 (431)
T ss_pred HHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCC
Confidence 34456788999999999999999998763 58999999999999999999999999999999998653 211 12256
Q ss_pred cCEEEECCCCCCC
Q 010971 250 VDRVLLDAPCSGT 262 (496)
Q Consensus 250 fD~VLlDaPCSg~ 262 (496)
||+|++|||.+|.
T Consensus 363 ~D~vi~dPPr~G~ 375 (431)
T TIGR00479 363 PDVLLLDPPRKGC 375 (431)
T ss_pred CCEEEECcCCCCC
Confidence 9999999998765
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=120.37 Aligned_cols=144 Identities=16% Similarity=0.205 Sum_probs=103.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
.+.+|||+|||+|..+..++...++ ..|+++|+++..++.++.++..+|+.++.+.+.|+... +..+.||.|++||
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~~~~~fD~Vi~np 162 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP---LPGGKFDLIVSNP 162 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc---CcCCceeEEEECC
Confidence 4569999999999999999988654 68999999999999999999999998899999998653 2237899999999
Q ss_pred CCCCCCcccC--------CchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 010971 258 PCSGTGVISK--------DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 258 PCSg~G~i~r--------~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~ 329 (496)
|+...+.+.. .|...+...... ......++..+.++| +|||.+++.. +. ...+.+..++.
T Consensus 163 Py~~~~~~~~~~~~~~~~e~~~~~~~~~~~----~~~~~~~i~~~~~~L----~~gG~~~~~~-~~---~~~~~~~~~l~ 230 (251)
T TIGR03534 163 PYIPEADIHLLDPEVRFHEPRLALFGGEDG----LDFYRRIIAQAPRLL----KPGGWLLLEI-GY---DQGEAVRALFE 230 (251)
T ss_pred CCCchhhhhhcChhhhhcCCHHHHcCCCcH----HHHHHHHHHHHHHhc----ccCCEEEEEE-Cc---cHHHHHHHHHH
Confidence 9998765432 111111111111 122356788888876 9999998853 22 22344555566
Q ss_pred hCCcEEee
Q 010971 330 KRDVKLVP 337 (496)
Q Consensus 330 ~~~~~lv~ 337 (496)
+.+++.+.
T Consensus 231 ~~gf~~v~ 238 (251)
T TIGR03534 231 AAGFADVE 238 (251)
T ss_pred hCCCCceE
Confidence 66655443
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.9e-12 Score=126.43 Aligned_cols=139 Identities=21% Similarity=0.262 Sum_probs=87.2
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~ 248 (496)
..+..+.+++|.+|||+|||+|-.|..++..+++.|.|+++|+|+.+|+.+++++...+..+|.++.+|+..+| ++++
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp--~~d~ 115 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP--FPDN 115 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB----S-TT
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc--CCCC
Confidence 44556778899999999999999999999888778999999999999999999999999999999999999988 4568
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHH
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L 328 (496)
+||.|.+ +.|+ +.-| . +.+.|.+..+.| ||||+++....+- -+|. .+..+.
T Consensus 116 sfD~v~~-----~fgl-rn~~---------------d-~~~~l~E~~RVL----kPGG~l~ile~~~--p~~~-~~~~~~ 166 (233)
T PF01209_consen 116 SFDAVTC-----SFGL-RNFP---------------D-RERALREMYRVL----KPGGRLVILEFSK--PRNP-LLRALY 166 (233)
T ss_dssp -EEEEEE-----ES-G-GG-S---------------S-HHHHHHHHHHHE----EEEEEEEEEEEEB---SSH-HHHHHH
T ss_pred ceeEEEH-----HhhH-HhhC---------------C-HHHHHHHHHHHc----CCCeEEEEeeccC--CCCc-hhhcee
Confidence 9999986 2221 1111 1 233577788876 9999999866543 4454 444444
Q ss_pred HhCCcEEeec
Q 010971 329 KKRDVKLVPC 338 (496)
Q Consensus 329 ~~~~~~lv~~ 338 (496)
.-+-..++|.
T Consensus 167 ~~y~~~ilP~ 176 (233)
T PF01209_consen 167 KFYFKYILPL 176 (233)
T ss_dssp HH--------
T ss_pred eeeecccccc
Confidence 4333334553
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.7e-11 Score=102.45 Aligned_cols=111 Identities=27% Similarity=0.386 Sum_probs=88.8
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
...+.+.++.+|||+|||+|..+..++..+++ +.|+++|+++..++.++.++..+++.++.++..|+....... ...|
T Consensus 12 ~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 89 (124)
T TIGR02469 12 LSKLRLRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDS-LPEP 89 (124)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhh-cCCC
Confidence 34456677899999999999999999998765 799999999999999999999999988888888876532212 2589
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
|.|+++.+ . . ...+++..+.+.| +|||+|+.+.
T Consensus 90 D~v~~~~~----------------~--~-------~~~~~l~~~~~~L----k~gG~li~~~ 122 (124)
T TIGR02469 90 DRVFIGGS----------------G--G-------LLQEILEAIWRRL----RPGGRIVLNA 122 (124)
T ss_pred CEEEECCc----------------c--h-------hHHHHHHHHHHHc----CCCCEEEEEe
Confidence 99998642 0 0 1236788888886 9999998764
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-11 Score=128.41 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=62.6
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc------
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV------ 244 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~------ 244 (496)
..++++.++ +|||++||.|.+|+.||... ..|+|+|+++..++.++.|++.+|+.|+.++..++.++...
T Consensus 190 ~~~l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~ 265 (352)
T PF05958_consen 190 LEWLDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKARE 265 (352)
T ss_dssp HHHCTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-G
T ss_pred HHHhhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHH
Confidence 344566666 89999999999999998764 68999999999999999999999999999998776443211
Q ss_pred --------cCCCCcCEEEECCCCCCCC
Q 010971 245 --------LGLNTVDRVLLDAPCSGTG 263 (496)
Q Consensus 245 --------~~~~~fD~VLlDaPCSg~G 263 (496)
+....+|.||+|||-+|.+
T Consensus 266 ~~~~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 266 FNRLKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp GTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred HHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence 1123689999999999976
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.4e-11 Score=116.17 Aligned_cols=86 Identities=16% Similarity=0.273 Sum_probs=74.4
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~ 249 (496)
..+|.+.+|++|||+|||+|..+..++.+++..|.|+++|+++..++.+++|+.++|+.+ +.+.++|+...... ...
T Consensus 65 ~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~--~~~ 142 (205)
T PRK13944 65 CELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK--HAP 142 (205)
T ss_pred HHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc--CCC
Confidence 455778899999999999999999999998767899999999999999999999999864 88999998764322 368
Q ss_pred cCEEEECCC
Q 010971 250 VDRVLLDAP 258 (496)
Q Consensus 250 fD~VLlDaP 258 (496)
||+|+++..
T Consensus 143 fD~Ii~~~~ 151 (205)
T PRK13944 143 FDAIIVTAA 151 (205)
T ss_pred ccEEEEccC
Confidence 999999865
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.6e-11 Score=116.01 Aligned_cols=88 Identities=18% Similarity=0.219 Sum_probs=76.4
Q ss_pred hhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCC
Q 010971 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 168 ~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~ 247 (496)
.....++++++|++|||+|||+|..|..++.+++..+.|+++|+++..++.++++++.+|+.|+.++++|+..... ..
T Consensus 66 ~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~--~~ 143 (212)
T PRK13942 66 AIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE--EN 143 (212)
T ss_pred HHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--cC
Confidence 3445567889999999999999999999999987778999999999999999999999999999999999876432 23
Q ss_pred CCcCEEEECC
Q 010971 248 NTVDRVLLDA 257 (496)
Q Consensus 248 ~~fD~VLlDa 257 (496)
..||+|++++
T Consensus 144 ~~fD~I~~~~ 153 (212)
T PRK13942 144 APYDRIYVTA 153 (212)
T ss_pred CCcCEEEECC
Confidence 6899999864
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.5e-11 Score=112.15 Aligned_cols=132 Identities=20% Similarity=0.213 Sum_probs=99.9
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccC
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~ 246 (496)
..++...|.+.++.+|||+|||+|..+..++...+ .+.|+++|+++..++.+++|+.++++.++.+++.|+... +
T Consensus 20 r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~---~- 94 (187)
T PRK08287 20 RALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE---L- 94 (187)
T ss_pred HHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh---c-
Confidence 34455667778899999999999999999998754 479999999999999999999999988888888887421 2
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~ 326 (496)
...||+|+++..- + .+ ..++..+.+.| +|||+|+++... .++...+..
T Consensus 95 ~~~~D~v~~~~~~---~---------------~~-------~~~l~~~~~~L----k~gG~lv~~~~~---~~~~~~~~~ 142 (187)
T PRK08287 95 PGKADAIFIGGSG---G---------------NL-------TAIIDWSLAHL----HPGGRLVLTFIL---LENLHSALA 142 (187)
T ss_pred CcCCCEEEECCCc---c---------------CH-------HHHHHHHHHhc----CCCeEEEEEEec---HhhHHHHHH
Confidence 2579999986320 0 01 23566777775 999999986533 466666667
Q ss_pred HHHhCCcEE
Q 010971 327 ALKKRDVKL 335 (496)
Q Consensus 327 ~L~~~~~~l 335 (496)
++++++++.
T Consensus 143 ~l~~~g~~~ 151 (187)
T PRK08287 143 HLEKCGVSE 151 (187)
T ss_pred HHHHCCCCc
Confidence 787776543
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.9e-11 Score=115.49 Aligned_cols=147 Identities=22% Similarity=0.289 Sum_probs=107.1
Q ss_pred ccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecC
Q 010971 158 GFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD 237 (496)
Q Consensus 158 G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D 237 (496)
|.-+.|...+.+....+.+.++.+|||+|||+|..|..++...+ .+.|+++|+++.+++.+++|++++|+.++.+++.|
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d 98 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGS 98 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECc
Confidence 44456777777777888888999999999999999999987654 47999999999999999999999999889999998
Q ss_pred CCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 238 GNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 238 ~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
+....... ...+|.|++|.. . . ...+|..+.+.| +|||+|++.++++
T Consensus 99 ~~~~~~~~-~~~~d~v~~~~~----~---------------~-------~~~~l~~~~~~L----kpgG~li~~~~~~-- 145 (196)
T PRK07402 99 APECLAQL-APAPDRVCIEGG----R---------------P-------IKEILQAVWQYL----KPGGRLVATASSL-- 145 (196)
T ss_pred hHHHHhhC-CCCCCEEEEECC----c---------------C-------HHHHHHHHHHhc----CCCeEEEEEeecH--
Confidence 85421111 135788887632 0 0 134577777765 9999999998863
Q ss_pred cCCHHHHHHHHHh---CCcEEeecC
Q 010971 318 TENEAVIDYALKK---RDVKLVPCG 339 (496)
Q Consensus 318 eENE~vV~~~L~~---~~~~lv~~~ 339 (496)
+.-..+...+.. ++++.+.+.
T Consensus 146 -~~~~~~~~~~~~~~~~~~~~~~~~ 169 (196)
T PRK07402 146 -EGLYAISEGLAQLQARNIEVVQAA 169 (196)
T ss_pred -HHHHHHHHHHHhcCCCCceEEEEE
Confidence 222233344443 356666553
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.2e-11 Score=116.17 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=94.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCC-CCCccccCCCCcCEEEEC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~-~~~~~~~~~~~fD~VLlD 256 (496)
++.+|||+|||+|..+..++..+++ +.|+|+|+++.+++.+++++...++.++.+++.|+ ..++..+..+.||.|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~-~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPD-INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCC-ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 6889999999999999999988754 68999999999999999999999998999999998 655533445789999986
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~ 329 (496)
.|.. |........ ...+..+|..+.++| +|||+|+++|+ ++..+.++++
T Consensus 119 ~~~p------------~~~~~~~~~--~~~~~~~l~~i~~~L----kpgG~l~i~~~------~~~~~~~~~~ 167 (202)
T PRK00121 119 FPDP------------WPKKRHHKR--RLVQPEFLALYARKL----KPGGEIHFATD------WEGYAEYMLE 167 (202)
T ss_pred CCCC------------CCCcccccc--ccCCHHHHHHHHHHc----CCCCEEEEEcC------CHHHHHHHHH
Confidence 5421 100000000 012455778887776 99999998764 5555555554
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-10 Score=108.21 Aligned_cols=165 Identities=15% Similarity=0.104 Sum_probs=109.1
Q ss_pred ccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe--EEEEe
Q 010971 158 GFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN--TIVCN 235 (496)
Q Consensus 158 G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n--v~v~~ 235 (496)
|.|..... +.+.+..+...++.+|||+|||+|..+..++.. ...|+++|+++..+..+++++..+++.+ +.++.
T Consensus 4 ~~~~p~~~-~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~ 79 (188)
T PRK14968 4 EVYEPAED-SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIR 79 (188)
T ss_pred cccCcchh-HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEe
Confidence 34444333 444455555678899999999999999999886 3789999999999999999999998876 77888
Q ss_pred cCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 236 YDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 236 ~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.|..... ....||.|++++|+...+-.....+ .+......-.........++..+.++| +|||.+++..+++
T Consensus 80 ~d~~~~~---~~~~~d~vi~n~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~L----k~gG~~~~~~~~~ 151 (188)
T PRK14968 80 SDLFEPF---RGDKFDVILFNPPYLPTEEEEEWDD-WLNYALSGGKDGREVIDRFLDEVGRYL----KPGGRILLLQSSL 151 (188)
T ss_pred ccccccc---cccCceEEEECCCcCCCCchhhhhh-hhhhhhccCcChHHHHHHHHHHHHHhc----CCCeEEEEEEccc
Confidence 8875432 2247999999999865432111000 000000000001223456788888876 9999999888776
Q ss_pred CCcCCHHHHHHHHHhCCcEEee
Q 010971 316 MVTENEAVIDYALKKRDVKLVP 337 (496)
Q Consensus 316 ~~eENE~vV~~~L~~~~~~lv~ 337 (496)
.. ++ -+..++.+.+++++.
T Consensus 152 ~~--~~-~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 152 TG--ED-EVLEYLEKLGFEAEV 170 (188)
T ss_pred CC--HH-HHHHHHHHCCCeeee
Confidence 42 23 344556666666543
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.5e-11 Score=120.14 Aligned_cols=121 Identities=14% Similarity=0.182 Sum_probs=92.7
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
..+|||+|||+|..+++++...+ ...|+|+|+|+..++.+++|++++|+. ++.+++.|+.... ....||.|++||
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l---~~~~fDlIvsNP 209 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL---PGRRYDLIVSNP 209 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC---CCCCccEEEECC
Confidence 36899999999999999998764 378999999999999999999999986 4899999975422 225799999999
Q ss_pred CCCCCCcccC-------CchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 258 PCSGTGVISK-------DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 258 PCSg~G~i~r-------~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
|+.+.+.+.. .|...+.-..+ -....+.++..+.+.| +|||++++-
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~d----Gl~~~~~i~~~a~~~L----~pgG~l~~E 262 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDD----GLDLVRRILAEAPDYL----TEDGVLVVE 262 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCc----hHHHHHHHHHHHHHhc----CCCCEEEEE
Confidence 9998765432 22222211111 1245677899998886 999999864
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.8e-11 Score=108.12 Aligned_cols=111 Identities=14% Similarity=0.255 Sum_probs=91.0
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
+.+.+|||+|||+|..+..|+....+.+.++++|+|+..++.++.+++++++.|+.+.+.|...++..+. +.||+|+++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 5688999999999999999996555568999999999999999999999999999999999998764322 689999998
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.++... .....+|..+.+++ ++||.++.+.+.
T Consensus 81 ~~l~~~----------------------~~~~~~l~~~~~~l----k~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHF----------------------PDPEKVLKNIIRLL----KPGGILIISDPN 112 (152)
T ss_dssp STGGGT----------------------SHHHHHHHHHHHHE----EEEEEEEEEEEE
T ss_pred Cchhhc----------------------cCHHHHHHHHHHHc----CCCcEEEEEECC
Confidence 764111 12235677888886 999999988888
|
... |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.6e-11 Score=115.50 Aligned_cols=126 Identities=24% Similarity=0.302 Sum_probs=103.9
Q ss_pred cccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEE
Q 010971 155 YMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIV 233 (496)
Q Consensus 155 ~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v 233 (496)
|..+-=++--+.|.+.++.+++.||.+|||+|+|+|..|++||...++.|.|+..|+..++++.+.+|++..|+.+ |.+
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~ 150 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTL 150 (256)
T ss_pred CcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEE
Confidence 3444444445667788889999999999999999999999999999889999999999999999999999999987 888
Q ss_pred EecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEE-EEe
Q 010971 234 CNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV-YST 312 (496)
Q Consensus 234 ~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LV-YST 312 (496)
...|....... ..||+|++|.| +| | +.|.++.++| +|||.++ |+.
T Consensus 151 ~~~Dv~~~~~~---~~vDav~LDmp---------~P---W---------------~~le~~~~~L----kpgg~~~~y~P 196 (256)
T COG2519 151 KLGDVREGIDE---EDVDAVFLDLP---------DP---W---------------NVLEHVSDAL----KPGGVVVVYSP 196 (256)
T ss_pred Eeccccccccc---cccCEEEEcCC---------Ch---H---------------HHHHHHHHHh----CCCcEEEEEcC
Confidence 88998876432 48999999998 11 2 3588888887 9999764 555
Q ss_pred CC
Q 010971 313 CS 314 (496)
Q Consensus 313 CS 314 (496)
|.
T Consensus 197 ~v 198 (256)
T COG2519 197 TV 198 (256)
T ss_pred CH
Confidence 54
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-10 Score=107.46 Aligned_cols=124 Identities=18% Similarity=0.238 Sum_probs=101.8
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
+...-.|..|+|+|||+|..++..+.+ +...|+|+|+++..++.+++|+.+ +..+|.++..|.+.+. ..||.
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~~-----~~~dt 111 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDFR-----GKFDT 111 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhcC-----Cccce
Confidence 345667889999999999988765544 457999999999999999999999 5567999999998875 67999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCC
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~ 332 (496)
|+.||| .|+.++|+|. ..|..|++. +.+|| |++..-+.+.+..+...++
T Consensus 112 vimNPP---FG~~~rhaDr-----------------~Fl~~Ale~--------s~vVY---siH~a~~~~f~~~~~~~~G 160 (198)
T COG2263 112 VIMNPP---FGSQRRHADR-----------------PFLLKALEI--------SDVVY---SIHKAGSRDFVEKFAADLG 160 (198)
T ss_pred EEECCC---CccccccCCH-----------------HHHHHHHHh--------hheEE---EeeccccHHHHHHHHHhcC
Confidence 999999 7777888774 357888886 47899 5888889999998888876
Q ss_pred cEE
Q 010971 333 VKL 335 (496)
Q Consensus 333 ~~l 335 (496)
..+
T Consensus 161 ~~v 163 (198)
T COG2263 161 GTV 163 (198)
T ss_pred CeE
Confidence 443
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-10 Score=111.65 Aligned_cols=115 Identities=17% Similarity=0.223 Sum_probs=91.3
Q ss_pred HHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCC
Q 010971 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~ 249 (496)
....+.+.+|.+|||+|||+|..+..++...+..+.|+++|+++..++.+++++.+.++.++.++.+|+..++ +..+.
T Consensus 37 ~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 114 (231)
T TIGR02752 37 TMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP--FDDNS 114 (231)
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC--CCCCC
Confidence 3455677889999999999999999999988767899999999999999999999999988999999998765 23478
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
||.|+++-. +...++ ..++|..+.+.| +|||+|+..+
T Consensus 115 fD~V~~~~~------l~~~~~----------------~~~~l~~~~~~L----k~gG~l~~~~ 151 (231)
T TIGR02752 115 FDYVTIGFG------LRNVPD----------------YMQVLREMYRVV----KPGGKVVCLE 151 (231)
T ss_pred ccEEEEecc------cccCCC----------------HHHHHHHHHHHc----CcCeEEEEEE
Confidence 999987532 111111 124677777776 9999998764
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.4e-10 Score=115.64 Aligned_cols=128 Identities=16% Similarity=0.181 Sum_probs=94.2
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEEECC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
+.+|||+|||+|..++.++...++ ..|+|+|+|+..++.++.|++++++.+ +.++.+|.... +....||+|++||
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~~-~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~---~~~~~fDlIvsNP 190 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEFPN-AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP---LAGQKIDIIVSNP 190 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc---CcCCCccEEEECC
Confidence 369999999999999999988653 689999999999999999999999975 89999987542 2224799999999
Q ss_pred CCCCCCcccCCchhhccCCHHHH---HHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 258 PCSGTGVISKDESVKTSKSLEDI---QKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i---~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
|+.....+...+++........+ ..-...++.++..+...| +|||+|++-++.
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L----~~gG~l~~e~g~ 246 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYL----KPNGFLVCEIGN 246 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhc----cCCCEEEEEECc
Confidence 99776533222222111000000 011236677888888886 999999986654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=8e-11 Score=125.64 Aligned_cols=113 Identities=20% Similarity=0.261 Sum_probs=92.0
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc-CCCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-GLNT 249 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~-~~~~ 249 (496)
...++..++++|||+.||.|++|++||.. ...|+|+|+++..++.+++|++.+|+.|+.+...|+..+.... ....
T Consensus 286 ~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~ 362 (432)
T COG2265 286 LEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYK 362 (432)
T ss_pred HHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCC
Confidence 44456778999999999999999999954 4689999999999999999999999999999999998875433 2357
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
||.||+|||-+|.+ ..++....++ +| -.|||++|--.
T Consensus 363 ~d~VvvDPPR~G~~------------------------~~~lk~l~~~-----~p-~~IvYVSCNP~ 399 (432)
T COG2265 363 PDVVVVDPPRAGAD------------------------REVLKQLAKL-----KP-KRIVYVSCNPA 399 (432)
T ss_pred CCEEEECCCCCCCC------------------------HHHHHHHHhc-----CC-CcEEEEeCCHH
Confidence 99999999998876 2345544454 55 46999999653
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-10 Score=107.95 Aligned_cols=123 Identities=17% Similarity=0.194 Sum_probs=94.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
+|.+|||+|||+|..+..++... +.+.|+|+|.++.+++.++++++++|+.++.++++|+..++. .+.||.|++++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~---~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH---EEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc---cCCccEEEehh
Confidence 48899999999999999888654 447899999999999999999999999889999999987632 36899999853
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHh---CCcE
Q 010971 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK---RDVK 334 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~---~~~~ 334 (496)
.+ + ...++..+.++| +|||+++.. .....+..+..+.++ .+++
T Consensus 118 ----~~---------------~-------~~~~~~~~~~~L----kpgG~lvi~----~~~~~~~~~~~~~e~~~~~~~~ 163 (181)
T TIGR00138 118 ----LA---------------S-------LNVLLELTLNLL----KVGGYFLAY----KGKKYLDEIEEAKRKCQVLGVE 163 (181)
T ss_pred ----hh---------------C-------HHHHHHHHHHhc----CCCCEEEEE----cCCCcHHHHHHHHHhhhhcCce
Confidence 00 0 112455555655 999999874 456667777777666 3677
Q ss_pred Eeec
Q 010971 335 LVPC 338 (496)
Q Consensus 335 lv~~ 338 (496)
.++.
T Consensus 164 ~~~~ 167 (181)
T TIGR00138 164 PLEV 167 (181)
T ss_pred Eeec
Confidence 6665
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.9e-11 Score=117.02 Aligned_cols=91 Identities=27% Similarity=0.383 Sum_probs=73.4
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCC--Ccc
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNE--LPK 243 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~--~~~ 243 (496)
..+.++.|++.||.+||+.|+|+|+.|.+|+..+++.|.|+.+|++.+|++.+++|++++|+. +|.+.+.|... ++.
T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 446678899999999999999999999999999999999999999999999999999999996 69999999753 321
Q ss_pred ccCCCCcCEEEECCC
Q 010971 244 VLGLNTVDRVLLDAP 258 (496)
Q Consensus 244 ~~~~~~fD~VLlDaP 258 (496)
.. ...||.|+||-|
T Consensus 109 ~~-~~~~DavfLDlp 122 (247)
T PF08704_consen 109 EL-ESDFDAVFLDLP 122 (247)
T ss_dssp T--TTSEEEEEEESS
T ss_pred cc-cCcccEEEEeCC
Confidence 12 267999999998
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.2e-11 Score=114.31 Aligned_cols=87 Identities=24% Similarity=0.326 Sum_probs=73.4
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
..+|.++||++|||+|||+|..|..||.+.+..|.|+++|.++..++.+++|+.++|..||.++.+|+....... ..|
T Consensus 65 l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~--apf 142 (209)
T PF01135_consen 65 LEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE--APF 142 (209)
T ss_dssp HHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG---SE
T ss_pred HHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC--CCc
Confidence 566789999999999999999999999999888999999999999999999999999999999999987543222 689
Q ss_pred CEEEECCCC
Q 010971 251 DRVLLDAPC 259 (496)
Q Consensus 251 D~VLlDaPC 259 (496)
|+|++.+.|
T Consensus 143 D~I~v~~a~ 151 (209)
T PF01135_consen 143 DRIIVTAAV 151 (209)
T ss_dssp EEEEESSBB
T ss_pred CEEEEeecc
Confidence 999998764
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.1e-10 Score=107.65 Aligned_cols=112 Identities=21% Similarity=0.270 Sum_probs=80.7
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc------cccCCC
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP------KVLGLN 248 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~------~~~~~~ 248 (496)
.+++|++|||+|||||+.+.+++..+...+.|+++|+++.+ +..++.+++.|....+ .....+
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 45789999999999999999999988666899999999864 2346777788876532 112346
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+||+|++|+++...|.. +...+.. ...+..+|..+.++| +|||+++...
T Consensus 98 ~~D~V~~~~~~~~~g~~----------~~~~~~~-~~~~~~~l~~~~~~L----kpgG~lvi~~ 146 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYW----------DIDHLRS-IDLVELALDIAKEVL----KPKGNFVVKV 146 (188)
T ss_pred CccEEEcCCCCCCCCCc----------cccHHHH-HHHHHHHHHHHHHHc----cCCCEEEEEE
Confidence 79999999765444432 1112222 234667888888886 9999998753
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.4e-10 Score=118.87 Aligned_cols=146 Identities=14% Similarity=0.160 Sum_probs=100.4
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
+.++.+|||+|||+|..++.++...+ ...|+|+|+|+..++.+++|++++|. ++.+++.|....... ..+.||.|++
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l~-~~~~FDLIVS 325 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDMP-SEGKWDIIVS 325 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccccc-cCCCccEEEE
Confidence 34677999999999999998887654 47899999999999999999999987 788899997543211 1257999999
Q ss_pred CCCCCCCCcccC-------CchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHH
Q 010971 256 DAPCSGTGVISK-------DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (496)
Q Consensus 256 DaPCSg~G~i~r-------~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L 328 (496)
|||....+-... .|...+.-. ..--...+.|+..+.+.| +|||.+++- +. ....+-|..++
T Consensus 326 NPPYI~~~e~~l~~~~v~~EP~~AL~gG----~dGL~~yr~Ii~~a~~~L----kpgG~lilE---iG-~~Q~e~V~~ll 393 (423)
T PRK14966 326 NPPYIENGDKHLLQGDLRFEPQIALTDF----SDGLSCIRTLAQGAPDRL----AEGGFLLLE---HG-FDQGAAVRGVL 393 (423)
T ss_pred CCCCCCcchhhhcchhhhcCHHHHhhCC----CchHHHHHHHHHHHHHhc----CCCcEEEEE---EC-ccHHHHHHHHH
Confidence 999977653322 222221111 111234567788877775 999998752 22 23344555566
Q ss_pred HhCCcEEe
Q 010971 329 KKRDVKLV 336 (496)
Q Consensus 329 ~~~~~~lv 336 (496)
...++..+
T Consensus 394 ~~~Gf~~v 401 (423)
T PRK14966 394 AENGFSGV 401 (423)
T ss_pred HHCCCcEE
Confidence 66555433
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.4e-10 Score=109.36 Aligned_cols=86 Identities=20% Similarity=0.247 Sum_probs=72.5
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~ 248 (496)
....++.++++.+|||+|||+|..|..++.+. +.|+++|+++..++.++++++++|+.++.+...|+..... ..+
T Consensus 69 ~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~ 143 (212)
T PRK00312 69 RMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP--AYA 143 (212)
T ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC--cCC
Confidence 34456788899999999999999999888774 4899999999999999999999999999999999855321 126
Q ss_pred CcCEEEECCCC
Q 010971 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~fD~VLlDaPC 259 (496)
.||+|+++++|
T Consensus 144 ~fD~I~~~~~~ 154 (212)
T PRK00312 144 PFDRILVTAAA 154 (212)
T ss_pred CcCEEEEccCc
Confidence 89999998864
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.1e-10 Score=108.47 Aligned_cols=121 Identities=19% Similarity=0.166 Sum_probs=93.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
++.+|||+|||+|..+..++...+ .+.|+++|+++.+++.++++++.+++.++.+.+.|+..++. .+.||.|++++
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~---~~~fDlV~~~~ 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ---EEKFDVVTSRA 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC---CCCccEEEEcc
Confidence 489999999999999999988654 47999999999999999999999999889999999987653 36899999852
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEEe
Q 010971 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLV 336 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~lv 336 (496)
.+ . + ..++..+.++| +|||++++..+.. ....+..+....++.+.
T Consensus 121 ----~~------------~---~-------~~~l~~~~~~L----kpGG~lv~~~~~~----~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 121 ----VA------------S---L-------SDLVELCLPLL----KPGGRFLALKGRD----PEEEIAELPKALGGKVE 165 (187)
T ss_pred ----cc------------C---H-------HHHHHHHHHhc----CCCeEEEEEeCCC----hHHHHHHHHHhcCceEe
Confidence 00 0 0 23567777776 9999999876553 33444444444455443
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-10 Score=112.69 Aligned_cols=138 Identities=17% Similarity=0.275 Sum_probs=112.5
Q ss_pred HHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCC-----cEEEEEeCCHHHHHHHHHHHHHcCCC---eEEEEecCCCCC
Q 010971 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNT-----GLIYANEMKASRLKSLTANLHRMGVT---NTIVCNYDGNEL 241 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~-----g~V~A~D~s~~rl~~l~~nl~r~g~~---nv~v~~~D~~~~ 241 (496)
.+..|.|..|.+|||||+|+|-.|.-|....++. +.|+.+|+|+++|+...++.++.++. .+.++.+|+..+
T Consensus 92 ~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L 171 (296)
T KOG1540|consen 92 FVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL 171 (296)
T ss_pred hhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC
Confidence 3556788999999999999999999999988764 79999999999999999999888774 388999999999
Q ss_pred ccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCH
Q 010971 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (496)
Q Consensus 242 ~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE 321 (496)
| +++..||+.-+ +.| |.++.+.|+ .|..|.+.| ||||++. |-.++.+|.
T Consensus 172 p--Fdd~s~D~yTi-----afG----------------IRN~th~~k-~l~EAYRVL----KpGGrf~---cLeFskv~~ 220 (296)
T KOG1540|consen 172 P--FDDDSFDAYTI-----AFG----------------IRNVTHIQK-ALREAYRVL----KPGGRFS---CLEFSKVEN 220 (296)
T ss_pred C--CCCCcceeEEE-----ecc----------------eecCCCHHH-HHHHHHHhc----CCCcEEE---EEEcccccc
Confidence 8 56789999864 223 333444454 578999986 9999886 888888888
Q ss_pred HHHHHHHHhCCcEEeec
Q 010971 322 AVIDYALKKRDVKLVPC 338 (496)
Q Consensus 322 ~vV~~~L~~~~~~lv~~ 338 (496)
+.+.+|....-+.++|+
T Consensus 221 ~~l~~fy~~ysf~Vlpv 237 (296)
T KOG1540|consen 221 EPLKWFYDQYSFDVLPV 237 (296)
T ss_pred HHHHHHHHhhhhhhhch
Confidence 88899888776666664
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.3e-10 Score=107.90 Aligned_cols=97 Identities=20% Similarity=0.230 Sum_probs=81.5
Q ss_pred cccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec
Q 010971 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236 (496)
Q Consensus 157 ~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~ 236 (496)
.|.++-|----.....+|++++|++||++|||+|..|..||++. +.|+++|..+.-.+.+++|++.+|+.||.+.++
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g 127 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRHG 127 (209)
T ss_pred CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEEC
Confidence 57777664333344677899999999999999999999999996 489999999999999999999999999999999
Q ss_pred CCCCCccccCCCCcCEEEECCC
Q 010971 237 DGNELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 237 D~~~~~~~~~~~~fD~VLlDaP 258 (496)
|+..--. ....||+|++.+-
T Consensus 128 DG~~G~~--~~aPyD~I~Vtaa 147 (209)
T COG2518 128 DGSKGWP--EEAPYDRIIVTAA 147 (209)
T ss_pred CcccCCC--CCCCcCEEEEeec
Confidence 9976422 2378999999654
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.6e-10 Score=112.37 Aligned_cols=115 Identities=22% Similarity=0.271 Sum_probs=91.1
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
...+.+|++|||+|||+|..+..++..++..+.|+++|+++.+++.+++++..+|+.++.+...|+..++ +..+.||.
T Consensus 72 ~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~--~~~~~fD~ 149 (272)
T PRK11873 72 LAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP--VADNSVDV 149 (272)
T ss_pred hccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC--CCCCceeE
Confidence 3456789999999999999888888887777899999999999999999999999989999999987765 23468999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
|+++.- +...|+ ...+|..+.++| +|||+|+.++-..
T Consensus 150 Vi~~~v------~~~~~d----------------~~~~l~~~~r~L----kpGG~l~i~~~~~ 186 (272)
T PRK11873 150 IISNCV------INLSPD----------------KERVFKEAFRVL----KPGGRFAISDVVL 186 (272)
T ss_pred EEEcCc------ccCCCC----------------HHHHHHHHHHHc----CCCcEEEEEEeec
Confidence 997631 111111 124678888886 9999999876443
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-10 Score=113.50 Aligned_cols=117 Identities=13% Similarity=0.165 Sum_probs=88.8
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH---cCCCeEEEEecCCCCCccccCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR---MGVTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r---~g~~nv~v~~~D~~~~~~~~~~ 247 (496)
...+.+.++.+|||+|||+|..+..++..++..+.|+|+|+|+.+++.++++... .+..++.+++.|+..+| ++.
T Consensus 66 ~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp--~~~ 143 (261)
T PLN02233 66 VSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP--FDD 143 (261)
T ss_pred HHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC--CCC
Confidence 4456778899999999999999999988876668999999999999999877642 24567899999998887 345
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
++||.|++. .+ +..-+ ....+|.++.+.| ||||+|+.++.+-
T Consensus 144 ~sfD~V~~~-----~~-l~~~~----------------d~~~~l~ei~rvL----kpGG~l~i~d~~~ 185 (261)
T PLN02233 144 CYFDAITMG-----YG-LRNVV----------------DRLKAMQEMYRVL----KPGSRVSILDFNK 185 (261)
T ss_pred CCEeEEEEe-----cc-cccCC----------------CHHHHHHHHHHHc----CcCcEEEEEECCC
Confidence 789999862 11 11101 1134577777776 9999999987663
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=110.45 Aligned_cols=158 Identities=16% Similarity=0.247 Sum_probs=101.3
Q ss_pred ccEEEeCCcchhHHHhc-CCCCCC-eEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEe
Q 010971 158 GFYMLQSASSFLPVMAL-APQEKE-RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCN 235 (496)
Q Consensus 158 G~~~iQd~sS~l~v~~L-~~~~g~-~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~ 235 (496)
+.|+....+-.|+-.++ ...... +|||+|||+|..++.++...++ ..|+|+|+|+..++.++.|+.++|+.++.++.
T Consensus 88 ~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~ 166 (280)
T COG2890 88 GVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVLVVQ 166 (280)
T ss_pred CceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEEEEe
Confidence 44544444444443322 222222 7999999999999999887654 69999999999999999999999987666655
Q ss_pred cCCCCCccccCCCCcCEEEECCCCCCCC-------cccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEE
Q 010971 236 YDGNELPKVLGLNTVDRVLLDAPCSGTG-------VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI 308 (496)
Q Consensus 236 ~D~~~~~~~~~~~~fD~VLlDaPCSg~G-------~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~L 308 (496)
.|... ... +.||+|+++||+=-.- +++.+|....--.. .-....++++..+...+ +|||.+
T Consensus 167 ~dlf~--~~~--~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~----dGl~~~~~i~~~a~~~l----~~~g~l 234 (280)
T COG2890 167 SDLFE--PLR--GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGG----DGLEVYRRILGEAPDIL----KPGGVL 234 (280)
T ss_pred eeccc--ccC--CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCc----cHHHHHHHHHHhhHHHc----CCCcEE
Confidence 55432 222 5899999999985443 12223322221111 12235677888888886 998877
Q ss_pred EEEeCCCCCcCCHHHHHHHHHhCC
Q 010971 309 VYSTCSIMVTENEAVIDYALKKRD 332 (496)
Q Consensus 309 VYSTCSi~~eENE~vV~~~L~~~~ 332 (496)
+. -+++. ..+. |..++.+.+
T Consensus 235 ~l-e~g~~--q~~~-v~~~~~~~~ 254 (280)
T COG2890 235 IL-EIGLT--QGEA-VKALFEDTG 254 (280)
T ss_pred EE-EECCC--cHHH-HHHHHHhcC
Confidence 64 34432 3344 444444544
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.9e-10 Score=118.57 Aligned_cols=84 Identities=14% Similarity=0.218 Sum_probs=70.0
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
...++.+|||+|||+|..|+.+|.. ...|+|+|+++..++.+++|++.+|+.++.+.+.|+..+.... ...||.|+
T Consensus 230 ~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~vi 305 (374)
T TIGR02085 230 REIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ-MSAPELVL 305 (374)
T ss_pred HhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc-CCCCCEEE
Confidence 3346789999999999999988853 3689999999999999999999999999999999987653211 14699999
Q ss_pred ECCCCCCC
Q 010971 255 LDAPCSGT 262 (496)
Q Consensus 255 lDaPCSg~ 262 (496)
+|||..|.
T Consensus 306 ~DPPr~G~ 313 (374)
T TIGR02085 306 VNPPRRGI 313 (374)
T ss_pred ECCCCCCC
Confidence 99997654
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.4e-10 Score=110.30 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=92.7
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCcccc--
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVL-- 245 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~-- 245 (496)
+...++...+..+|||+|+|+|.-++.|+..++..|.|+++|+++.+++.+++|++++|+.+ +.++.+|+......+
T Consensus 59 ~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~ 138 (234)
T PLN02781 59 FLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLN 138 (234)
T ss_pred HHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHh
Confidence 33444555667899999999999999999998888999999999999999999999999964 899999987642211
Q ss_pred --CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 246 --GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 246 --~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
..+.||.|++|++ + .....++..++.++ +|||.|+...+-+
T Consensus 139 ~~~~~~fD~VfiDa~-------------k------------~~y~~~~~~~~~ll----~~GG~ii~dn~l~ 181 (234)
T PLN02781 139 NDPKPEFDFAFVDAD-------------K------------PNYVHFHEQLLKLV----KVGGIIAFDNTLW 181 (234)
T ss_pred CCCCCCCCEEEECCC-------------H------------HHHHHHHHHHHHhc----CCCeEEEEEcCCc
Confidence 1258999999986 0 12234567777776 9999999766543
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.7e-10 Score=114.67 Aligned_cols=129 Identities=20% Similarity=0.236 Sum_probs=96.2
Q ss_pred CCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc
Q 010971 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243 (496)
Q Consensus 164 d~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~ 243 (496)
|.+|.+....|......+|||+|||+|..+..++...+ ...|+++|+++..++.++.|+.+.++. ..+...|+...
T Consensus 182 D~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~-- 257 (342)
T PRK09489 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSD-- 257 (342)
T ss_pred CHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEcccccc--
Confidence 44555555556555566999999999999999998754 368999999999999999999999885 35566776542
Q ss_pred ccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcC
Q 010971 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE 319 (496)
Q Consensus 244 ~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eE 319 (496)
. .+.||.|+++||- ..|.- .+ ...-.+++..|.+.| +|||.|++.+.+..+.+
T Consensus 258 -~-~~~fDlIvsNPPF-H~g~~---------~~-------~~~~~~~i~~a~~~L----kpgG~L~iVan~~l~y~ 310 (342)
T PRK09489 258 -I-KGRFDMIISNPPF-HDGIQ---------TS-------LDAAQTLIRGAVRHL----NSGGELRIVANAFLPYP 310 (342)
T ss_pred -c-CCCccEEEECCCc-cCCcc---------cc-------HHHHHHHHHHHHHhc----CcCCEEEEEEeCCCChH
Confidence 1 3689999999993 11110 00 112255788888886 99999999999988755
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.2e-10 Score=114.03 Aligned_cols=121 Identities=24% Similarity=0.328 Sum_probs=96.5
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec-CCCCCccccCCCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY-DGNELPKVLGLNT 249 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~-D~~~~~~~~~~~~ 249 (496)
|.+..+++|+.|||=+||+||..+.. .+|+ ..++++|++..++.-++.|++.+|+....+... |++.+| ++...
T Consensus 190 VNLa~v~~G~~vlDPFcGTGgiLiEa-gl~G--~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp--l~~~~ 264 (347)
T COG1041 190 VNLARVKRGELVLDPFCGTGGILIEA-GLMG--ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP--LRDNS 264 (347)
T ss_pred HHHhccccCCEeecCcCCccHHHHhh-hhcC--ceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC--CCCCc
Confidence 44456899999999999999987654 4553 689999999999999999999999998766655 999998 54457
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
||.|.+|||+--+-.+. ...+..+..+.|..+.+.| ++||++||.+-
T Consensus 265 vdaIatDPPYGrst~~~-------------~~~l~~Ly~~~le~~~evL----k~gG~~vf~~p 311 (347)
T COG1041 265 VDAIATDPPYGRSTKIK-------------GEGLDELYEEALESASEVL----KPGGRIVFAAP 311 (347)
T ss_pred cceEEecCCCCcccccc-------------cccHHHHHHHHHHHHHHHh----hcCcEEEEecC
Confidence 99999999974322111 1126677788899998886 99999999765
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.9e-10 Score=113.63 Aligned_cols=84 Identities=17% Similarity=0.254 Sum_probs=73.3
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcC
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD 251 (496)
..++++++++|||+|||+|..+..++..++..|.|+++|+++..++.+++++..+|+.++.++.+|+....... ..||
T Consensus 74 ~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~--~~fD 151 (322)
T PRK13943 74 EWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF--APYD 151 (322)
T ss_pred HhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc--CCcc
Confidence 45668899999999999999999999988766789999999999999999999999999999999987654322 5799
Q ss_pred EEEECC
Q 010971 252 RVLLDA 257 (496)
Q Consensus 252 ~VLlDa 257 (496)
+|+++.
T Consensus 152 ~Ii~~~ 157 (322)
T PRK13943 152 VIFVTV 157 (322)
T ss_pred EEEECC
Confidence 999974
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.1e-10 Score=115.70 Aligned_cols=123 Identities=18% Similarity=0.346 Sum_probs=98.5
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
.+.+..+..|||+|||+|..++++|...+ ...++|+|+++.++..+..++.+.|+.|+.++++|+..+...++.+.||.
T Consensus 117 ~~~~~~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~ 195 (390)
T PRK14121 117 FISKNQEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEK 195 (390)
T ss_pred HhcCCCCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeE
Confidence 34455678999999999999999999975 47999999999999999999999999999999999987654556689999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
|++.-|+ | |.+... .++ .+..+|..+.++| +|||.+...|.+..
T Consensus 196 I~lnFPd---------P---W~KkrH--RRl--v~~~fL~e~~RvL----kpGG~l~l~TD~~~ 239 (390)
T PRK14121 196 IFVHFPV---------P---WDKKPH--RRV--ISEDFLNEALRVL----KPGGTLELRTDSEL 239 (390)
T ss_pred EEEeCCC---------C---ccccch--hhc--cHHHHHHHHHHHc----CCCcEEEEEEECHH
Confidence 9997663 2 222111 122 2567788888876 99999999998753
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.4e-10 Score=116.79 Aligned_cols=112 Identities=27% Similarity=0.335 Sum_probs=86.2
Q ss_pred hHHHhcCCC-CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCC
Q 010971 169 LPVMALAPQ-EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 169 l~v~~L~~~-~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~ 247 (496)
+++.++... ++.+|||++||+|..++.++...+ ...|+++|+++..++.++.|++.+|+.++.+.+.|+..+... .
T Consensus 47 ~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~--~ 123 (382)
T PRK04338 47 LVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE--E 123 (382)
T ss_pred HHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh--c
Confidence 333444333 457999999999999999988764 358999999999999999999999999888999998765321 2
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
..||+|++||| |++ ...|..|+..+ ++||.|.+ ||+
T Consensus 124 ~~fD~V~lDP~--Gs~------------------------~~~l~~al~~~----~~~gilyv-SAt 159 (382)
T PRK04338 124 RKFDVVDIDPF--GSP------------------------APFLDSAIRSV----KRGGLLCV-TAT 159 (382)
T ss_pred CCCCEEEECCC--CCc------------------------HHHHHHHHHHh----cCCCEEEE-Eec
Confidence 57999999998 443 23577777776 88776654 454
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-09 Score=105.79 Aligned_cols=110 Identities=23% Similarity=0.314 Sum_probs=77.6
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc------cccCCCC
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP------KVLGLNT 249 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~------~~~~~~~ 249 (496)
..+|.+|||+|||||+.+..+++.++..+.|+|+|+++- .++.++.++++|+...+ ..+....
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHHHhCCCC
Confidence 367899999999999999999999877789999999981 23457889999998753 1133478
Q ss_pred cCEEEECC-CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 250 VDRVLLDA-PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 250 fD~VLlDa-PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
||.|++|+ |.. +| +|. .+......+...+|..+.++| +|||++|..+
T Consensus 118 ~D~V~S~~~~~~-~g----~~~-------~d~~~~~~~~~~~L~~~~~~L----kpGG~~vi~~ 165 (209)
T PRK11188 118 VQVVMSDMAPNM-SG----TPA-------VDIPRAMYLVELALDMCRDVL----APGGSFVVKV 165 (209)
T ss_pred CCEEecCCCCcc-CC----ChH-------HHHHHHHHHHHHHHHHHHHHc----CCCCEEEEEE
Confidence 99999985 321 22 111 111111222345777777775 9999998753
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.6e-10 Score=109.06 Aligned_cols=101 Identities=30% Similarity=0.372 Sum_probs=75.0
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
.++|+.||||+||-|.+++.+|... ....|+|+|+++..++.|++|++.+++.+ +.++++|++.+.. ...||+|+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~---~~~~drvi 174 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP---EGKFDRVI 174 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG------TT-EEEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC---ccccCEEE
Confidence 5789999999999999999998753 34689999999999999999999999987 7899999998865 37899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVY 310 (496)
++-|-+. ...|..|+.++ ++||.+.|
T Consensus 175 m~lp~~~--------------------------~~fl~~~~~~~----~~~g~ihy 200 (200)
T PF02475_consen 175 MNLPESS--------------------------LEFLDAALSLL----KEGGIIHY 200 (200)
T ss_dssp E--TSSG--------------------------GGGHHHHHHHE----EEEEEEEE
T ss_pred ECChHHH--------------------------HHHHHHHHHHh----cCCcEEEC
Confidence 9988332 12477788886 99999887
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.4e-09 Score=101.49 Aligned_cols=122 Identities=21% Similarity=0.284 Sum_probs=85.0
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCc--------EEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTG--------LIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL 241 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g--------~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~ 241 (496)
+.+..+++|+.|||-+||+|+..+..+.+..+.. .+++.|+++..+..++.|++..|+.. +.+.+.|+..+
T Consensus 21 l~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l 100 (179)
T PF01170_consen 21 LNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAREL 100 (179)
T ss_dssp HHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGG
T ss_pred HHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhc
Confidence 4555688999999999999999887766655432 38999999999999999999999975 88889999998
Q ss_pred ccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 242 ~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
+ +..+.||.|++|||. | .....-..+..+...++..+.+.+ ++ .+|+.|++
T Consensus 101 ~--~~~~~~d~IvtnPPy---G-----------~r~~~~~~~~~ly~~~~~~~~~~l----~~--~~v~l~~~ 151 (179)
T PF01170_consen 101 P--LPDGSVDAIVTNPPY---G-----------RRLGSKKDLEKLYRQFLRELKRVL----KP--RAVFLTTS 151 (179)
T ss_dssp G--GTTSBSCEEEEE--S---T-----------TSHCHHHHHHHHHHHHHHHHHCHS----TT--CEEEEEES
T ss_pred c--cccCCCCEEEECcch---h-----------hhccCHHHHHHHHHHHHHHHHHHC----CC--CEEEEEEC
Confidence 8 334789999999994 1 222233445677788888888765 66 45554444
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.4e-10 Score=111.41 Aligned_cols=121 Identities=21% Similarity=0.220 Sum_probs=96.9
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCcccc
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL 245 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~ 245 (496)
..+...++......+|||+|++.|..|+++|..++..|.|+++|.++.+++.+++|+++.|+. +|.++.+|+......+
T Consensus 107 g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l 186 (278)
T PLN02476 107 AQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSM 186 (278)
T ss_pred HHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHH
Confidence 445555566667889999999999999999999988899999999999999999999999997 5999999987642212
Q ss_pred ----CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 246 ----GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 246 ----~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
..+.||.||+|++ + ......+..++++| +|||.||.-.+-++
T Consensus 187 ~~~~~~~~FD~VFIDa~-------------K------------~~Y~~y~e~~l~lL----~~GGvIV~DNvL~~ 232 (278)
T PLN02476 187 IQNGEGSSYDFAFVDAD-------------K------------RMYQDYFELLLQLV----RVGGVIVMDNVLWH 232 (278)
T ss_pred HhcccCCCCCEEEECCC-------------H------------HHHHHHHHHHHHhc----CCCcEEEEecCccC
Confidence 1257999999997 0 22345677777776 99999998766544
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.1e-10 Score=106.52 Aligned_cols=117 Identities=18% Similarity=0.231 Sum_probs=88.4
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc-cCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-LGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~-~~~~~fD~VLl 255 (496)
..+.+|||+|||+|..+..+|...+ .+.|+++|++..++..+..++++.|+.|+.+++.|+..++.. +..+.||.|++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 3567999999999999999998865 478999999999999999999999999999999999765422 23358999999
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+.| +|..+-...... + .+..+|..+.+.| +|||.|.++|
T Consensus 94 ~~p---------dpw~k~~h~~~r---~--~~~~~l~~~~r~L----kpgG~l~~~t 132 (194)
T TIGR00091 94 NFP---------DPWPKKRHNKRR---I--TQPHFLKEYANVL----KKGGVIHFKT 132 (194)
T ss_pred ECC---------CcCCCCCccccc---c--CCHHHHHHHHHHh----CCCCEEEEEe
Confidence 876 121110000000 1 1345677777776 9999998876
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.6e-09 Score=112.35 Aligned_cols=124 Identities=9% Similarity=0.002 Sum_probs=93.2
Q ss_pred CCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC---eEEEEecCCCC
Q 010971 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT---NTIVCNYDGNE 240 (496)
Q Consensus 164 d~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~---nv~v~~~D~~~ 240 (496)
|.++.+....|....+.+|||+|||+|..++.++...+ ...|+++|+|+..++.+++|++.++.. ++.+...|+..
T Consensus 214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 55566666666655567999999999999999998864 479999999999999999999988753 67888888754
Q ss_pred CccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 241 ~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
.. ...+||.|+++||.---..+ +. ..-.+++..|.+.| +|||.|+...
T Consensus 293 ~~---~~~~fDlIlsNPPfh~~~~~----------~~-------~ia~~l~~~a~~~L----kpGG~L~iV~ 340 (378)
T PRK15001 293 GV---EPFRFNAVLCNPPFHQQHAL----------TD-------NVAWEMFHHARRCL----KINGELYIVA 340 (378)
T ss_pred cC---CCCCEEEEEECcCcccCccC----------CH-------HHHHHHHHHHHHhc----ccCCEEEEEE
Confidence 21 22579999999996421111 11 11235788888876 9999998875
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.5e-09 Score=115.53 Aligned_cols=141 Identities=11% Similarity=0.126 Sum_probs=99.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
++.+|||+|||+|..++.++..+++ ..|+|+|+|+..++.++.|+.++|+. ++.++.+|.... ...+.||+|++|
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~-~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~---~~~~~fDlIvsN 213 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPN-ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN---IEKQKFDFIVSN 213 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh---CcCCCccEEEEC
Confidence 4578999999999999999887654 79999999999999999999999986 488888886532 223579999999
Q ss_pred CCCCCCCccc--------CCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHH
Q 010971 257 APCSGTGVIS--------KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (496)
Q Consensus 257 aPCSg~G~i~--------r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L 328 (496)
||+....-.. ..|...+.-..+. ....+.|+..+.+.| +|||.|++. +. .. ..+.|..++
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dG----l~~~~~il~~a~~~L----~~gG~l~lE-ig--~~-q~~~v~~~~ 281 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDG----LQAYFIIAENAKQFL----KPNGKIILE-IG--FK-QEEAVTQIF 281 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccH----HHHHHHHHHHHHHhc----cCCCEEEEE-EC--Cc-hHHHHHHHH
Confidence 9998765321 1233222211112 234567888888876 999999764 33 22 334445555
Q ss_pred HhCCcE
Q 010971 329 KKRDVK 334 (496)
Q Consensus 329 ~~~~~~ 334 (496)
.+.++.
T Consensus 282 ~~~g~~ 287 (506)
T PRK01544 282 LDHGYN 287 (506)
T ss_pred HhcCCC
Confidence 555544
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-08 Score=102.21 Aligned_cols=129 Identities=22% Similarity=0.228 Sum_probs=100.2
Q ss_pred eCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc
Q 010971 163 QSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP 242 (496)
Q Consensus 163 Qd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~ 242 (496)
=|.+|.+....|....+.+|||+|||-|-.++.++...+ ...|+.+|+|...++.++.|++.+++++..+...|...-
T Consensus 143 lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~- 220 (300)
T COG2813 143 LDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP- 220 (300)
T ss_pred cChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-
Confidence 367788888888888788999999999999999999876 579999999999999999999999999865555554332
Q ss_pred cccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 243 KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 243 ~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
.. ++||.|+++||-- .| ......+-.+|+..|.+.| ++||.|....-...+
T Consensus 221 -v~--~kfd~IisNPPfh-~G----------------~~v~~~~~~~~i~~A~~~L----~~gGeL~iVan~~l~ 271 (300)
T COG2813 221 -VE--GKFDLIISNPPFH-AG----------------KAVVHSLAQEIIAAAARHL----KPGGELWIVANRHLP 271 (300)
T ss_pred -cc--ccccEEEeCCCcc-CC----------------cchhHHHHHHHHHHHHHhh----ccCCEEEEEEcCCCC
Confidence 22 4899999999932 11 1112223356899999987 999999776554443
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.9e-09 Score=103.98 Aligned_cols=80 Identities=19% Similarity=0.120 Sum_probs=66.2
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.++.+|||+|||+|..++.++.. ..+.|+++|+++..++.+++|++.+|+.++.+++.|+..+.... ...||+|++|
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr--~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~-~~~fDlV~~D 128 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSR--YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQP-GTPHNVVFVD 128 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc-CCCceEEEEC
Confidence 56889999999999999854443 24699999999999999999999999989999999986542211 2469999999
Q ss_pred CCC
Q 010971 257 APC 259 (496)
Q Consensus 257 aPC 259 (496)
||.
T Consensus 129 PPy 131 (199)
T PRK10909 129 PPF 131 (199)
T ss_pred CCC
Confidence 994
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-09 Score=111.65 Aligned_cols=108 Identities=15% Similarity=0.198 Sum_probs=85.1
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
.++.+|||+|||+|+.+.+++... .+.|+++|+++..++.+++++...|+. ++.+..+|+..++ +..+.||.|++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~--~~~~~FD~V~s 192 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP--FEDGQFDLVWS 192 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC--CCCCCccEEEE
Confidence 678999999999999999999876 368999999999999999999998885 5999999998876 34578999986
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
-- ++..-++ ..++|.++.++| +|||+|+.+++.
T Consensus 193 ~~------~~~h~~d----------------~~~~l~e~~rvL----kpGG~lvi~~~~ 225 (340)
T PLN02244 193 ME------SGEHMPD----------------KRKFVQELARVA----APGGRIIIVTWC 225 (340)
T ss_pred CC------chhccCC----------------HHHHHHHHHHHc----CCCcEEEEEEec
Confidence 21 1111111 134577777775 999999998764
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-09 Score=114.98 Aligned_cols=81 Identities=16% Similarity=0.306 Sum_probs=67.5
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccC------------
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG------------ 246 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~------------ 246 (496)
+.+|||+|||+|+.|+.++... ..|+|+|+++..++.+++|+..+|+.|+.+...|+..+...+.
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~ 283 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGID 283 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccc
Confidence 3579999999999999888753 5899999999999999999999999999999999876422110
Q ss_pred --CCCcCEEEECCCCCCC
Q 010971 247 --LNTVDRVLLDAPCSGT 262 (496)
Q Consensus 247 --~~~fD~VLlDaPCSg~ 262 (496)
...||+|++|||-+|.
T Consensus 284 ~~~~~~D~v~lDPPR~G~ 301 (362)
T PRK05031 284 LKSYNFSTIFVDPPRAGL 301 (362)
T ss_pred ccCCCCCEEEECCCCCCC
Confidence 1258999999997654
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.2e-09 Score=106.29 Aligned_cols=138 Identities=16% Similarity=0.190 Sum_probs=103.1
Q ss_pred CcchhHHHhcC--CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCC
Q 010971 165 ASSFLPVMALA--PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL 241 (496)
Q Consensus 165 ~sS~l~v~~L~--~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~ 241 (496)
+...+...+|. .++|.+|||+|||+|-.++.++.+ +...|+|+|+++..++.+++|+.++|+.. +.....+....
T Consensus 147 pTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~ 224 (300)
T COG2264 147 PTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV 224 (300)
T ss_pred hhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh
Confidence 55566666664 568999999999999988765554 55789999999999999999999999985 33333333333
Q ss_pred ccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCH
Q 010971 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (496)
Q Consensus 242 ~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE 321 (496)
+ ..+.||+|+++ -|+..-..|...+...+ +|||+++.|- |.. +-+
T Consensus 225 ~---~~~~~DvIVAN-------------------------ILA~vl~~La~~~~~~l----kpgg~lIlSG--Il~-~q~ 269 (300)
T COG2264 225 P---ENGPFDVIVAN-------------------------ILAEVLVELAPDIKRLL----KPGGRLILSG--ILE-DQA 269 (300)
T ss_pred c---ccCcccEEEeh-------------------------hhHHHHHHHHHHHHHHc----CCCceEEEEe--ehH-hHH
Confidence 2 22589999874 14555556666666665 9999999987 554 447
Q ss_pred HHHHHHHHhCCcEEeecC
Q 010971 322 AVIDYALKKRDVKLVPCG 339 (496)
Q Consensus 322 ~vV~~~L~~~~~~lv~~~ 339 (496)
+.|..++...+++++++.
T Consensus 270 ~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 270 ESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred HHHHHHHHhCCCeEeEEE
Confidence 778888888888888763
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.1e-09 Score=112.34 Aligned_cols=82 Identities=13% Similarity=0.272 Sum_probs=67.6
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc---------C---
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---------G--- 246 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~---------~--- 246 (496)
+.+|||+|||+|..|+.++... ..|+|+|+++..++.+++|+..+|+.|+.++..|+..+.... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 274 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGID 274 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccc
Confidence 3579999999999999888764 489999999999999999999999999999999987643210 0
Q ss_pred --CCCcCEEEECCCCCCCC
Q 010971 247 --LNTVDRVLLDAPCSGTG 263 (496)
Q Consensus 247 --~~~fD~VLlDaPCSg~G 263 (496)
...||.|++|||-+|.+
T Consensus 275 ~~~~~~d~v~lDPPR~G~~ 293 (353)
T TIGR02143 275 LKSYNCSTIFVDPPRAGLD 293 (353)
T ss_pred cccCCCCEEEECCCCCCCc
Confidence 02389999999966543
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-08 Score=98.84 Aligned_cols=115 Identities=18% Similarity=0.214 Sum_probs=86.3
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
...+.+.++.+|||+|||+|..+..++..++..+.++++|+++.++..++++... ...++.+...|...++ +..+.|
T Consensus 12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~--~~~~~~ 88 (241)
T PRK08317 12 FELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLP--FPDGSF 88 (241)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCC--CCCCCc
Confidence 3456778899999999999999999999885567999999999999999888433 2346888888887665 234789
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
|.|+++.. +. .+ .....++..+.++| +|||+|+++++.
T Consensus 89 D~v~~~~~------~~------------~~----~~~~~~l~~~~~~L----~~gG~l~~~~~~ 126 (241)
T PRK08317 89 DAVRSDRV------LQ------------HL----EDPARALAEIARVL----RPGGRVVVLDTD 126 (241)
T ss_pred eEEEEech------hh------------cc----CCHHHHHHHHHHHh----cCCcEEEEEecC
Confidence 99997421 10 00 11234577777776 999999998875
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.7e-09 Score=100.72 Aligned_cols=114 Identities=18% Similarity=0.118 Sum_probs=84.4
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~ 248 (496)
.....+.+.++.+|||+|||+|..+.+|++. ...|+|+|+|+..++.+++++...++.++.+...|...++. ..
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~ 94 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF---DG 94 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc---CC
Confidence 4455566677899999999999999999875 25899999999999999999999999888888888876542 25
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
.||.|++-.. +. ..++. ....++..+.++| +|||++++.+
T Consensus 95 ~fD~I~~~~~------~~-------~~~~~-------~~~~~l~~i~~~L----kpgG~~~~~~ 134 (197)
T PRK11207 95 EYDFILSTVV------LM-------FLEAK-------TIPGLIANMQRCT----KPGGYNLIVA 134 (197)
T ss_pred CcCEEEEecc------hh-------hCCHH-------HHHHHHHHHHHHc----CCCcEEEEEE
Confidence 7999986221 10 01111 1234667777765 9999976543
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.9e-09 Score=104.60 Aligned_cols=134 Identities=16% Similarity=0.123 Sum_probs=91.5
Q ss_pred cchhHHHhcC--CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCc
Q 010971 166 SSFLPVMALA--PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELP 242 (496)
Q Consensus 166 sS~l~v~~L~--~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~ 242 (496)
...+...+|. ..+|.+|||+|||+|..+..++.+ +.+.|+|+|+++.+++.+++|+..+++.+ +.+...|.....
T Consensus 145 tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~ 222 (288)
T TIGR00406 145 TTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPI 222 (288)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccccc
Confidence 3344433333 457899999999999988776654 34689999999999999999999999865 555555532221
Q ss_pred cccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHH
Q 010971 243 KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322 (496)
Q Consensus 243 ~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~ 322 (496)
.+.||+|+++..+ .....++..+.++| +|||+|+.|... . +...
T Consensus 223 ----~~~fDlVvan~~~-------------------------~~l~~ll~~~~~~L----kpgG~li~sgi~--~-~~~~ 266 (288)
T TIGR00406 223 ----EGKADVIVANILA-------------------------EVIKELYPQFSRLV----KPGGWLILSGIL--E-TQAQ 266 (288)
T ss_pred ----CCCceEEEEecCH-------------------------HHHHHHHHHHHHHc----CCCcEEEEEeCc--H-hHHH
Confidence 3689999986420 11134667777775 999999998753 2 3334
Q ss_pred HHHHHHHhCCcEEeec
Q 010971 323 VIDYALKKRDVKLVPC 338 (496)
Q Consensus 323 vV~~~L~~~~~~lv~~ 338 (496)
.|..++++. ++++..
T Consensus 267 ~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 267 SVCDAYEQG-FTVVEI 281 (288)
T ss_pred HHHHHHHcc-CceeeE
Confidence 444455554 665543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.5e-09 Score=109.49 Aligned_cols=122 Identities=25% Similarity=0.295 Sum_probs=95.1
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
..+|++||||+||-|.+|+.+|..-. ..|+|+|+|+..++.|++|++.+++.+ +..+++|++.+.... +.||+|+
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~--~~aDrIi 261 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL--GVADRII 261 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc--ccCCEEE
Confidence 45799999999999999999988743 349999999999999999999999998 889999999987544 7899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcC---CHHHHHHHHHhC
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE---NEAVIDYALKKR 331 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eE---NE~vV~~~L~~~ 331 (496)
+.-|-+ +.+.|..|+.++ ++||.|.|-+-+-..+. ....+..+..+.
T Consensus 262 m~~p~~--------------------------a~~fl~~A~~~~----k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~ 311 (341)
T COG2520 262 MGLPKS--------------------------AHEFLPLALELL----KDGGIIHYYEFVPEDDIEERPEKRIKSAARKG 311 (341)
T ss_pred eCCCCc--------------------------chhhHHHHHHHh----hcCcEEEEEeccchhhcccchHHHHHHHHhhc
Confidence 987721 234688888987 89999987654432221 334444444444
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=8e-09 Score=102.70 Aligned_cols=108 Identities=16% Similarity=0.204 Sum_probs=82.0
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
.++.+|||+|||+|..+..++.. ...|+++|+++..++.+++++...|+. ++.++++|+..++.. ..+.||+|++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~-~~~~fD~V~~ 118 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH-LETPVDLILF 118 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh-cCCCCCEEEe
Confidence 45789999999999999999875 268999999999999999999999974 688999998776432 2378999997
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.... .+ + .-...+|..+.++| +|||+|+....+
T Consensus 119 ~~vl------------~~---------~-~~~~~~l~~~~~~L----kpgG~l~i~~~n 151 (255)
T PRK11036 119 HAVL------------EW---------V-ADPKSVLQTLWSVL----RPGGALSLMFYN 151 (255)
T ss_pred hhHH------------Hh---------h-CCHHHHHHHHHHHc----CCCeEEEEEEEC
Confidence 4321 00 0 01134677777776 999999865444
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.9e-08 Score=99.97 Aligned_cols=119 Identities=17% Similarity=0.152 Sum_probs=84.8
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
+.++.+|||+|||+|..+..++.. + .+.|+|+|+|+.+++.+++|+..+++. .+.+...| ..||+|+
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~----------~~fD~Vv 184 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD----------LKADVIV 184 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC----------CCcCEEE
Confidence 468999999999999887765543 3 357999999999999999999999884 34433222 2699999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcE
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVK 334 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~ 334 (496)
++.. ......++..+.++| +|||+|+.|.... +..+-+...+.+.+++
T Consensus 185 ani~-------------------------~~~~~~l~~~~~~~L----kpgG~lilsgi~~---~~~~~v~~~l~~~Gf~ 232 (250)
T PRK00517 185 ANIL-------------------------ANPLLELAPDLARLL----KPGGRLILSGILE---EQADEVLEAYEEAGFT 232 (250)
T ss_pred EcCc-------------------------HHHHHHHHHHHHHhc----CCCcEEEEEECcH---hhHHHHHHHHHHCCCE
Confidence 8531 111234567777775 9999999986542 3444555566777777
Q ss_pred Eeec
Q 010971 335 LVPC 338 (496)
Q Consensus 335 lv~~ 338 (496)
++..
T Consensus 233 ~~~~ 236 (250)
T PRK00517 233 LDEV 236 (250)
T ss_pred EEEE
Confidence 6653
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.2e-09 Score=102.33 Aligned_cols=82 Identities=22% Similarity=0.285 Sum_probs=60.4
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCcccc--CCCCcCEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVL--GLNTVDRV 253 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~--~~~~fD~V 253 (496)
-+|.+|||+|||+|..++..+. ++...|+.+|.++..++.+++|++.+++.+ +.++..|+..+-... ....||+|
T Consensus 41 ~~g~~vLDLFaGSGalGlEALS--RGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiI 118 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALS--RGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDII 118 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHH--TT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEE
T ss_pred cCCCeEEEcCCccCccHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEE
Confidence 3799999999999999986544 356799999999999999999999999987 888888865442212 34789999
Q ss_pred EECCCCC
Q 010971 254 LLDAPCS 260 (496)
Q Consensus 254 LlDaPCS 260 (496)
++|||+-
T Consensus 119 flDPPY~ 125 (183)
T PF03602_consen 119 FLDPPYA 125 (183)
T ss_dssp EE--STT
T ss_pred EECCCcc
Confidence 9999953
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.5e-09 Score=101.98 Aligned_cols=121 Identities=19% Similarity=0.217 Sum_probs=97.6
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEe-cCCCCCccc
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCN-YDGNELPKV 244 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~-~D~~~~~~~ 244 (496)
-.+..+++......+||++|++.|-.|+.||..++..|+|+++|+++++.+.+++|+++.|+.+ |+++. +|+.+.-..
T Consensus 48 g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~ 127 (219)
T COG4122 48 GALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR 127 (219)
T ss_pred HHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh
Confidence 3455566666778899999999999999999999877999999999999999999999999987 67777 477655332
Q ss_pred cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 245 ~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
...+.||.||+|+- ...+.+.|..++++| +|||.||.-.-.+.
T Consensus 128 ~~~~~fDliFIDad-------------------------K~~yp~~le~~~~lL----r~GGliv~DNvl~~ 170 (219)
T COG4122 128 LLDGSFDLVFIDAD-------------------------KADYPEYLERALPLL----RPGGLIVADNVLFG 170 (219)
T ss_pred ccCCCccEEEEeCC-------------------------hhhCHHHHHHHHHHh----CCCcEEEEeecccC
Confidence 23489999999984 123455688888886 99999988766665
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.6e-08 Score=100.37 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=84.3
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~-~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
+.++.+|||+|||+|..+..++..+ .+.+.|+++|+|+.+++.+++++..++.. ++.++.+|+..++ . ..||.|
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~--~--~~~D~v 129 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA--I--ENASMV 129 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC--C--CCCCEE
Confidence 3578999999999999998888764 34579999999999999999999998876 5889999988765 2 458988
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHH-HHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCS-YLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~-~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
++.-. +..+. ..+..++....+.| +|||.|+.++..
T Consensus 130 v~~~~---------------------l~~l~~~~~~~~l~~i~~~L----kpGG~l~l~e~~ 166 (247)
T PRK15451 130 VLNFT---------------------LQFLEPSERQALLDKIYQGL----NPGGALVLSEKF 166 (247)
T ss_pred ehhhH---------------------HHhCCHHHHHHHHHHHHHhc----CCCCEEEEEEec
Confidence 75211 11111 11345777777776 999999998743
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-08 Score=82.63 Aligned_cols=103 Identities=19% Similarity=0.251 Sum_probs=80.9
Q ss_pred eEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCCCC
Q 010971 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCS 260 (496)
Q Consensus 181 ~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCS 260 (496)
+|||+|||+|..+..++. .....++++|+++..+..+++.....+..++.+...|...... .....||+|+++.||.
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-EADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-ccCCceEEEEEcccee
Confidence 589999999999988877 3457999999999999988876555566678888888877653 1236899999999976
Q ss_pred CCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 261 GTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 261 g~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.. ...+..++..+...+ +|||.++++
T Consensus 78 ~~---------------------~~~~~~~l~~~~~~l----~~~g~~~~~ 103 (107)
T cd02440 78 HL---------------------VEDLARFLEEARRLL----KPGGVLVLT 103 (107)
T ss_pred eh---------------------hhHHHHHHHHHHHHc----CCCCEEEEE
Confidence 53 234456777777776 999999876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.6e-09 Score=110.44 Aligned_cols=103 Identities=19% Similarity=0.240 Sum_probs=83.3
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCCC
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPC 259 (496)
-+|||++||+|.-++.++...++...|++||+++..++.+++|++.+++.++.+++.|+..+.... ...||+|.+||+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~-~~~fDvIdlDPf- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR-NRKFHVIDIDPF- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh-CCCCCEEEeCCC-
Confidence 489999999999999988875555689999999999999999999999999999999987764322 257999999997
Q ss_pred CCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 260 Sg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
|+. ...|..|++.+ ++||.| |.|||
T Consensus 124 -Gs~------------------------~~fld~al~~~----~~~glL-~vTaT 148 (374)
T TIGR00308 124 -GTP------------------------APFVDSAIQAS----AERGLL-LVTAT 148 (374)
T ss_pred -CCc------------------------HHHHHHHHHhc----ccCCEE-EEEec
Confidence 321 13588888887 888766 44544
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.7e-09 Score=97.72 Aligned_cols=82 Identities=27% Similarity=0.317 Sum_probs=66.5
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCC-CCcCEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGL-NTVDRVL 254 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~-~~fD~VL 254 (496)
-+|.+|||++||+|+.++..+.. +...++.+|.|...+..+++|++.+++. ++.++..|+..+...... +.||+|+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVf 119 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVF 119 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEE
Confidence 47999999999999999866554 5679999999999999999999999975 478888888754222221 2499999
Q ss_pred ECCCCC
Q 010971 255 LDAPCS 260 (496)
Q Consensus 255 lDaPCS 260 (496)
+|||+-
T Consensus 120 lDPPy~ 125 (187)
T COG0742 120 LDPPYA 125 (187)
T ss_pred eCCCCc
Confidence 999953
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-08 Score=98.15 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=66.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCcccc-C-CCCcCEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL-G-LNTVDRVL 254 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~-~-~~~fD~VL 254 (496)
+|.+|||+|||+|..++.++.. +...|+++|.++..++.+++|++.+++. ++.+.+.|+..+.... . ...||+|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 5899999999999999888775 3458999999999999999999999996 5889999985542211 1 12489999
Q ss_pred ECCCCC
Q 010971 255 LDAPCS 260 (496)
Q Consensus 255 lDaPCS 260 (496)
+|||..
T Consensus 127 ~DPPy~ 132 (189)
T TIGR00095 127 LDPPFF 132 (189)
T ss_pred ECcCCC
Confidence 999964
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.5e-08 Score=95.55 Aligned_cols=126 Identities=14% Similarity=0.129 Sum_probs=87.0
Q ss_pred cccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEE
Q 010971 155 YMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVC 234 (496)
Q Consensus 155 ~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~ 234 (496)
|..+.|-..-. +......+.+.++.+|||+|||+|..+.++++. ...|+|+|+|+..++.+++++...|+. +.+.
T Consensus 8 ~~~~~~~~~~~-~~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~ 82 (195)
T TIGR00477 8 YFHKKYGMTTT-HSAVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP-LRTD 82 (195)
T ss_pred HHHHhhCCCCc-hHHHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeE
Confidence 44555544433 333445666666789999999999999999874 368999999999999999999888885 6666
Q ss_pred ecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 235 NYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 235 ~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
..|...++ + ...||.|++-.+... .+.. ....++..+.++| +|||+++..+
T Consensus 83 ~~d~~~~~--~-~~~fD~I~~~~~~~~-------------~~~~-------~~~~~l~~~~~~L----kpgG~lli~~ 133 (195)
T TIGR00477 83 AYDINAAA--L-NEDYDFIFSTVVFMF-------------LQAG-------RVPEIIANMQAHT----RPGGYNLIVA 133 (195)
T ss_pred eccchhcc--c-cCCCCEEEEeccccc-------------CCHH-------HHHHHHHHHHHHh----CCCcEEEEEE
Confidence 77765443 2 257999987433110 1111 1234577777776 9999966544
|
Part of a tellurite-reducing operon tehA and tehB |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-08 Score=100.32 Aligned_cols=117 Identities=15% Similarity=0.207 Sum_probs=91.8
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~ 247 (496)
+....|.++||++|||+|||-|+.+.++|+.. ...|+++++|++.++.+++.+...|+. ++.+.-.|-+++.
T Consensus 63 ~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~----- 135 (283)
T COG2230 63 LILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE----- 135 (283)
T ss_pred HHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc-----
Confidence 44556789999999999999999999999987 379999999999999999999999998 7999888888775
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHH-HHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY-LQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~-lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
+.||+|+. .|+ +..+.. .....+..+...| +|||.++.-|-+...
T Consensus 136 e~fDrIvS------vgm---------------fEhvg~~~~~~ff~~~~~~L----~~~G~~llh~I~~~~ 181 (283)
T COG2230 136 EPFDRIVS------VGM---------------FEHVGKENYDDFFKKVYALL----KPGGRMLLHSITGPD 181 (283)
T ss_pred cccceeee------hhh---------------HHHhCcccHHHHHHHHHhhc----CCCceEEEEEecCCC
Confidence 45999964 333 222222 1234566666665 999999887666543
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.5e-08 Score=101.95 Aligned_cols=108 Identities=17% Similarity=0.119 Sum_probs=80.3
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcCEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
.+.+|.+|||+|||+|..+..|+.. .+.|+++|+++..++.++.++...+. .++.+++.|+..++. ..+.||+|
T Consensus 128 ~~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~--~~~~FD~V 202 (322)
T PLN02396 128 KPFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD--EGRKFDAV 202 (322)
T ss_pred cCCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh--ccCCCCEE
Confidence 3567889999999999999888763 36899999999999999988766554 468899999877763 23689999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
++- +++. .+.. ...+|....++| +|||.|+.+|-
T Consensus 203 i~~------~vLe---------------Hv~d-~~~~L~~l~r~L----kPGG~liist~ 236 (322)
T PLN02396 203 LSL------EVIE---------------HVAN-PAEFCKSLSALT----IPNGATVLSTI 236 (322)
T ss_pred EEh------hHHH---------------hcCC-HHHHHHHHHHHc----CCCcEEEEEEC
Confidence 871 1221 1111 123566666665 99999999873
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.8e-09 Score=86.96 Aligned_cols=95 Identities=19% Similarity=0.260 Sum_probs=70.8
Q ss_pred eeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCCCCCC
Q 010971 183 IDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT 262 (496)
Q Consensus 183 LDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~ 262 (496)
||+|||+|..+..+++. +...|+++|+++..++.++++....++ .+...|+..+| +++++||.|++--
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~---~~~~~d~~~l~--~~~~sfD~v~~~~----- 68 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGV---SFRQGDAEDLP--FPDNSFDVVFSNS----- 68 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTE---EEEESBTTSSS--S-TT-EEEEEEES-----
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCc---hheeehHHhCc--ccccccccccccc-----
Confidence 89999999999999988 447999999999999999888876544 38889999886 4458999998721
Q ss_pred CcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 010971 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 263 G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVY 310 (496)
+ +.+ + ..+..++.++.+.| ||||+++.
T Consensus 69 -~--------~~~-------~-~~~~~~l~e~~rvL----k~gG~l~~ 95 (95)
T PF08241_consen 69 -V--------LHH-------L-EDPEAALREIYRVL----KPGGRLVI 95 (95)
T ss_dssp -H--------GGG-------S-SHHHHHHHHHHHHE----EEEEEEEE
T ss_pred -c--------eee-------c-cCHHHHHHHHHHHc----CcCeEEeC
Confidence 1 011 1 33456788888876 99999974
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-08 Score=103.00 Aligned_cols=117 Identities=18% Similarity=0.235 Sum_probs=81.2
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGL 247 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~ 247 (496)
.....++++||++|||+|||-|+.+.++|+..+ ..|+++.+|+...+.+++.+.+.|+.+ +.+...|.++++
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~----- 125 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP----- 125 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC-----
Confidence 445567899999999999999999999999873 689999999999999999999999975 888888987765
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
..||+|+. .|++-.-+ .. ....++..+.++| +|||.++.-+++..
T Consensus 126 ~~fD~IvS------i~~~Ehvg-------~~-------~~~~~f~~~~~~L----kpgG~~~lq~i~~~ 170 (273)
T PF02353_consen 126 GKFDRIVS------IEMFEHVG-------RK-------NYPAFFRKISRLL----KPGGRLVLQTITHR 170 (273)
T ss_dssp -S-SEEEE------ESEGGGTC-------GG-------GHHHHHHHHHHHS----ETTEEEEEEEEEE-
T ss_pred CCCCEEEE------EechhhcC-------hh-------HHHHHHHHHHHhc----CCCcEEEEEecccc
Confidence 48999975 23332211 11 1134566777765 99999987666643
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=5e-08 Score=94.50 Aligned_cols=117 Identities=21% Similarity=0.269 Sum_probs=87.0
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~ 249 (496)
+..+.+.++.+|||+|||+|..+..++...+....++++|+++..+..+++++...+.. ++.+...|+..++. ..+.
T Consensus 44 ~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~ 121 (239)
T PRK00216 44 IKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF--PDNS 121 (239)
T ss_pred HHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC--CCCC
Confidence 44555668899999999999999999988753579999999999999999999876654 47888888877652 3368
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
||+|++.- ++..-+ + ...+|..+..+| +|||.|++++.+.
T Consensus 122 ~D~I~~~~------~l~~~~---------~-------~~~~l~~~~~~L----~~gG~li~~~~~~ 161 (239)
T PRK00216 122 FDAVTIAF------GLRNVP---------D-------IDKALREMYRVL----KPGGRLVILEFSK 161 (239)
T ss_pred ccEEEEec------ccccCC---------C-------HHHHHHHHHHhc----cCCcEEEEEEecC
Confidence 99998621 111000 0 134577777776 9999999876554
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2e-08 Score=99.64 Aligned_cols=107 Identities=13% Similarity=0.191 Sum_probs=80.5
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
...+.+.++.+|||+|||+|..+..++...+ .+.|+++|+++.+++.+++++ .++.+...|+..+. ....|
T Consensus 24 l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~---~~~~f 94 (258)
T PRK01683 24 LARVPLENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQ---PPQAL 94 (258)
T ss_pred HhhCCCcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccC---CCCCc
Confidence 4455667899999999999999999998864 479999999999999888764 45778888887653 23689
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
|+|++....- |.. .+..+|..+.+.| +|||.++.++
T Consensus 95 D~v~~~~~l~------------~~~----------d~~~~l~~~~~~L----kpgG~~~~~~ 130 (258)
T PRK01683 95 DLIFANASLQ------------WLP----------DHLELFPRLVSLL----APGGVLAVQM 130 (258)
T ss_pred cEEEEccChh------------hCC----------CHHHHHHHHHHhc----CCCcEEEEEC
Confidence 9999865311 110 1234677777776 9999998863
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-08 Score=100.95 Aligned_cols=117 Identities=19% Similarity=0.199 Sum_probs=83.8
Q ss_pred EeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC
Q 010971 162 LQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL 241 (496)
Q Consensus 162 iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~ 241 (496)
+|...+......+...++.+|||+|||+|..+.+++.. ...|+++|+|+.+++.++.+.. .+.+++.|+..+
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~ 97 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESL 97 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccC
Confidence 56655555566666667889999999999998888763 3689999999999998877643 234677888776
Q ss_pred ccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 242 ~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
+ +..+.||.|++..+ +.|... ...+|.++.+.| +|||+|+++|-.
T Consensus 98 ~--~~~~~fD~V~s~~~------------l~~~~d----------~~~~l~~~~~~L----k~gG~l~~~~~~ 142 (251)
T PRK10258 98 P--LATATFDLAWSNLA------------VQWCGN----------LSTALRELYRVV----RPGGVVAFTTLV 142 (251)
T ss_pred c--CCCCcEEEEEECch------------hhhcCC----------HHHHHHHHHHHc----CCCeEEEEEeCC
Confidence 5 33468999987532 111111 234677777776 999999998743
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-08 Score=98.38 Aligned_cols=138 Identities=17% Similarity=0.189 Sum_probs=95.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC--CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK--NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~--~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
.+.+|||+|||+|..++.++..|. ....|+|+|+++..+..++.|+. ++.+.+.|+...+. ...||+|++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~~~~~~~D~~~~~~---~~~FDlIIs 120 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----EATWINADALTTEF---DTLFDMAIS 120 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----CCEEEEcchhcccc---cCCccEEEE
Confidence 478999999999999999998764 24689999999999999998753 46788889876542 268999999
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEE--------EEeCCCCC-cCCH--HHH
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV--------YSTCSIMV-TENE--AVI 324 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LV--------YSTCSi~~-eENE--~vV 324 (496)
+||..-... .+.. .+ ..-......++..|.+++ ++|+.|+ ||-|-... +|+- .-+
T Consensus 121 NPPY~~~~~--~d~~--ar------~~g~~~~~~li~~A~~Ll----~~G~~ILP~~~~~~~y~~~~~~~~~~~~~~~~~ 186 (241)
T PHA03412 121 NPPFGKIKT--SDFK--GK------YTGAEFEYKVIERASQIA----RQGTFIIPQMSANFRYSGTHYFRQDESTTSSKC 186 (241)
T ss_pred CCCCCCccc--cccC--Cc------ccccHHHHHHHHHHHHHc----CCCEEEeCcccccCcccCccceeeccCcccHHH
Confidence 999876442 1110 00 001234466889999865 8887765 67776552 3332 345
Q ss_pred HHHHHhCCcEEee
Q 010971 325 DYALKKRDVKLVP 337 (496)
Q Consensus 325 ~~~L~~~~~~lv~ 337 (496)
..|++..++.+.+
T Consensus 187 ~~~~~~~~~~~~~ 199 (241)
T PHA03412 187 KKFLDETGLEMNP 199 (241)
T ss_pred HHHHHhcCeeecC
Confidence 5667666655543
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.2e-09 Score=105.65 Aligned_cols=132 Identities=21% Similarity=0.250 Sum_probs=86.5
Q ss_pred chhHHHhcC--CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc
Q 010971 167 SFLPVMALA--PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244 (496)
Q Consensus 167 S~l~v~~L~--~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~ 244 (496)
..+...+|. ..+|.+|||+|||+|-.++..+.+ +.+.|+|+|+++..++.+++|+..+|+.....+. .....+
T Consensus 148 T~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~-~~~~~~-- 222 (295)
T PF06325_consen 148 TRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS-LSEDLV-- 222 (295)
T ss_dssp HHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES-CTSCTC--
T ss_pred HHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE-Eecccc--
Confidence 345555543 568999999999999988755444 4578999999999999999999999998722222 222222
Q ss_pred cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHH
Q 010971 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324 (496)
Q Consensus 245 ~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV 324 (496)
...||+|+.+- ++..-..|+..... .++|||+|+.|- +..++.+.|+
T Consensus 223 --~~~~dlvvANI-------------------------~~~vL~~l~~~~~~----~l~~~G~lIlSG--Il~~~~~~v~ 269 (295)
T PF06325_consen 223 --EGKFDLVVANI-------------------------LADVLLELAPDIAS----LLKPGGYLILSG--ILEEQEDEVI 269 (295)
T ss_dssp --CS-EEEEEEES--------------------------HHHHHHHHHHCHH----HEEEEEEEEEEE--EEGGGHHHHH
T ss_pred --cccCCEEEECC-------------------------CHHHHHHHHHHHHH----hhCCCCEEEEcc--ccHHHHHHHH
Confidence 27899999742 11222233333333 459999999864 4555666666
Q ss_pred HHHHHhCCcEEeec
Q 010971 325 DYALKKRDVKLVPC 338 (496)
Q Consensus 325 ~~~L~~~~~~lv~~ 338 (496)
+.+ ++ +++++..
T Consensus 270 ~a~-~~-g~~~~~~ 281 (295)
T PF06325_consen 270 EAY-KQ-GFELVEE 281 (295)
T ss_dssp HHH-HT-TEEEEEE
T ss_pred HHH-HC-CCEEEEE
Confidence 554 55 8887654
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.3e-08 Score=100.58 Aligned_cols=109 Identities=13% Similarity=0.079 Sum_probs=83.7
Q ss_pred CCCeEeeccCCCchHHHHHH-HHcCCCcEEEEEeCCHHHHHHHHHHHHH-cCCCe-EEEEecCCCCCccccCCCCcCEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIA-ALMKNTGLIYANEMKASRLKSLTANLHR-MGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA-~l~~~~g~V~A~D~s~~rl~~l~~nl~r-~g~~n-v~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
+..+|+|+|||||+.|..+. +.+.+.+.++++|+++.+++.+++++.+ .|+.+ +.+..+|+....... +.||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l--~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESL--KEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccccc--CCcCEEE
Confidence 67899999999998876543 3445668999999999999999999965 88876 999999998764333 6899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
+++= - + ++ ...+.++|.+..+.+ +|||+|++-+.
T Consensus 201 ~~AL-i--~-----------~d-------k~~k~~vL~~l~~~L----kPGG~Lvlr~~ 234 (296)
T PLN03075 201 LAAL-V--G-----------MD-------KEEKVKVIEHLGKHM----APGALLMLRSA 234 (296)
T ss_pred Eecc-c--c-----------cc-------cccHHHHHHHHHHhc----CCCcEEEEecc
Confidence 9731 1 0 11 122456788888876 99999998763
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-08 Score=100.30 Aligned_cols=104 Identities=17% Similarity=0.230 Sum_probs=78.1
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
...+.+.++.+|||+|||+|..+..|+...+ .+.|+++|+|+..++.++++ ++.+...|+..++. .+.|
T Consensus 22 l~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~---~~~f 90 (255)
T PRK14103 22 LARVGAERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKP---KPDT 90 (255)
T ss_pred HHhCCCCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCC---CCCc
Confidence 4445667899999999999999999998874 47899999999999887652 46677889876642 3689
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
|.|++.... .|. ..+..+|..+.+.| +|||+++.+
T Consensus 91 D~v~~~~~l------------~~~----------~d~~~~l~~~~~~L----kpgG~l~~~ 125 (255)
T PRK14103 91 DVVVSNAAL------------QWV----------PEHADLLVRWVDEL----APGSWIAVQ 125 (255)
T ss_pred eEEEEehhh------------hhC----------CCHHHHHHHHHHhC----CCCcEEEEE
Confidence 999985541 010 11244677777776 999999875
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.4e-08 Score=96.98 Aligned_cols=149 Identities=13% Similarity=0.024 Sum_probs=96.5
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEE
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
+.+.++.+|||+|||+|..+..++...+. ..|+++|+++..++.++.++ .++.+++.|+..+.. ...||.|
T Consensus 60 ~~~~~~grVLDLGcGsGilsl~la~r~~~-~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~---~~kFDlI 130 (279)
T PHA03411 60 IDAHCTGKVLDLCAGIGRLSFCMLHRCKP-EKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES---NEKFDVV 130 (279)
T ss_pred hccccCCeEEEcCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc---cCCCcEE
Confidence 34556789999999999999888776533 58999999999999888763 367788999987642 2689999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEE--EEEeCCC-CCcCCHHHHHHHHHh
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI--VYSTCSI-MVTENEAVIDYALKK 330 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~L--VYSTCSi-~~eENE~vV~~~L~~ 330 (496)
++|||..............++-.......+. -.++|.....+ |+|+|.+ +||+--+ +..=..+-...+|+.
T Consensus 131 IsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~--~~~~l~~v~~~----L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~ 204 (279)
T PHA03411 131 ISNPPFGKINTTDTKDVFEYTGGEFEFKVMT--LGQKFADVGYF----IVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQ 204 (279)
T ss_pred EEcCCccccCchhhhhhhhhccCcccccccc--HHHHHhhhHhe----ecCCceEEEEEeccccccccCCHHHHHHHHHh
Confidence 9999976654332222222210000000000 12344444455 4999965 4655333 333345566778888
Q ss_pred CCcEEee
Q 010971 331 RDVKLVP 337 (496)
Q Consensus 331 ~~~~lv~ 337 (496)
+++.+.+
T Consensus 205 ~g~~~~~ 211 (279)
T PHA03411 205 TGLVTYA 211 (279)
T ss_pred cCcEecC
Confidence 8888765
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3e-08 Score=99.46 Aligned_cols=115 Identities=15% Similarity=0.139 Sum_probs=84.7
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~ 248 (496)
..+..+.+.++.+|||+|||+|+.+.+++... .+.|+++|+++..+..+++++.. ..++.+...|+...+ ++.+
T Consensus 43 ~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~--~~~~ 116 (263)
T PTZ00098 43 KILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKD--FPEN 116 (263)
T ss_pred HHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCC--CCCC
Confidence 33455678899999999999999999888754 36999999999999999887654 346888889987654 3347
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH-HHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS-YLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~-~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.||+|++-.- +..+. .....+|..+.++| +|||+|+.+...
T Consensus 117 ~FD~V~s~~~---------------------l~h~~~~d~~~~l~~i~r~L----kPGG~lvi~d~~ 158 (263)
T PTZ00098 117 TFDMIYSRDA---------------------ILHLSYADKKKLFEKCYKWL----KPNGILLITDYC 158 (263)
T ss_pred CeEEEEEhhh---------------------HHhCCHHHHHHHHHHHHHHc----CCCcEEEEEEec
Confidence 8999987110 11111 12345788888876 999999987543
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-08 Score=96.43 Aligned_cols=126 Identities=25% Similarity=0.260 Sum_probs=87.8
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc------cccCCCC
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP------KVLGLNT 249 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~------~~~~~~~ 249 (496)
+.+|.+|+|+||||||++..++..++..+.|+|+|+.+-.. +.+|.++..|++.-+ ..+....
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCCceEEeeeccCccHHHHHHHHcCCCC
Confidence 46799999999999999999999999888999999987322 356888888887532 2223345
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~ 329 (496)
+|+|++|+----+|+ ++.++. .+..|...|+++...+|+|||.+|. .++.-++++.+-+.++
T Consensus 112 ~DvV~sD~ap~~~g~----------~~~Dh~-----r~~~L~~~a~~~a~~vL~~~G~fv~---K~fqg~~~~~~l~~~~ 173 (205)
T COG0293 112 VDVVLSDMAPNTSGN----------RSVDHA-----RSMYLCELALEFALEVLKPGGSFVA---KVFQGEDFEDLLKALR 173 (205)
T ss_pred cceEEecCCCCcCCC----------ccccHH-----HHHHHHHHHHHHHHHeeCCCCeEEE---EEEeCCCHHHHHHHHH
Confidence 799999965444443 232332 2334555566665566799999985 4555566666555555
Q ss_pred h
Q 010971 330 K 330 (496)
Q Consensus 330 ~ 330 (496)
+
T Consensus 174 ~ 174 (205)
T COG0293 174 R 174 (205)
T ss_pred H
Confidence 4
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-08 Score=94.91 Aligned_cols=84 Identities=29% Similarity=0.296 Sum_probs=61.4
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCC-cCEEEECC
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNT-VDRVLLDA 257 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~-fD~VLlDa 257 (496)
..|||+|||.||-|+++|... ..|+|+|+++.|++.++.|++-+|+. +|.++++|...+........ ||.|+++|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 369999999999999999874 47999999999999999999999985 69999999877644332222 89999999
Q ss_pred CCCCCCccc
Q 010971 258 PCSGTGVIS 266 (496)
Q Consensus 258 PCSg~G~i~ 266 (496)
|=-|-....
T Consensus 78 PWGGp~Y~~ 86 (163)
T PF09445_consen 78 PWGGPSYSK 86 (163)
T ss_dssp -BSSGGGGG
T ss_pred CCCCccccc
Confidence 977765554
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.6e-09 Score=102.54 Aligned_cols=109 Identities=21% Similarity=0.328 Sum_probs=86.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCC-ccccC---CCCcCE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNEL-PKVLG---LNTVDR 252 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~-~~~~~---~~~fD~ 252 (496)
.-.+||++|++.|..|++||..+++.|+|+++|+++.+.+.++.++++.|+. .|.++.+|+..+ +.... .+.||.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 4469999999999999999999988899999999999999999999999996 499999999764 22211 247999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
||+|+. + ..+...+..++.+| +|||.||.-.+-+
T Consensus 125 VFiDa~-------------K------------~~y~~y~~~~~~ll----~~ggvii~DN~l~ 158 (205)
T PF01596_consen 125 VFIDAD-------------K------------RNYLEYFEKALPLL----RPGGVIIADNVLW 158 (205)
T ss_dssp EEEEST-------------G------------GGHHHHHHHHHHHE----EEEEEEEEETTTG
T ss_pred EEEccc-------------c------------cchhhHHHHHhhhc----cCCeEEEEccccc
Confidence 999986 1 11234566667776 9999999876654
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-07 Score=94.67 Aligned_cols=146 Identities=12% Similarity=0.104 Sum_probs=99.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCC---CccccCCCCcCEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNE---LPKVLGLNTVDRV 253 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~---~~~~~~~~~fD~V 253 (496)
.+..|||+|||+|..++.|+.-++ .++|+|+|+|+..++.+.+|++|+++.+ +.+.+.+... .+.....+..|.+
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 356899999999999999999887 5999999999999999999999999987 6666554321 1221234789999
Q ss_pred EECCCCCCCCcc-cCCchhhccCCHHHH---HHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 010971 254 LLDAPCSGTGVI-SKDESVKTSKSLEDI---QKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 254 LlDaPCSg~G~i-~r~p~~k~~~s~~~i---~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~ 329 (496)
+++||+--.--+ .-+|+++.--..-.+ .........++.-|.++| +|||.+++.+--. .+....|++++.
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~L----q~gg~~~le~~~~--~~~~~lv~~~m~ 300 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRML----QPGGFEQLELVER--KEHSYLVRIWMI 300 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhc----ccCCeEEEEeccc--ccCcHHHHHHHH
Confidence 999997433211 124555432111111 112223334455566665 9999999976533 566678887775
Q ss_pred h
Q 010971 330 K 330 (496)
Q Consensus 330 ~ 330 (496)
.
T Consensus 301 s 301 (328)
T KOG2904|consen 301 S 301 (328)
T ss_pred h
Confidence 4
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.6e-08 Score=105.66 Aligned_cols=115 Identities=15% Similarity=0.138 Sum_probs=84.6
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
+..+.+.++.+|||+|||+|+.+..++... ...|+|+|+|+..+..++.+....+ .++.+...|....+ ++.+.|
T Consensus 259 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~--~~~~~f 333 (475)
T PLN02336 259 VDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKT--YPDNSF 333 (475)
T ss_pred HHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCC--CCCCCE
Confidence 344556789999999999999999998865 3589999999999999998876433 35888889987654 234689
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
|+|++. +++-.-+ . ...+|..+.+.| +|||+|+.++-...
T Consensus 334 D~I~s~------~~l~h~~------d----------~~~~l~~~~r~L----kpgG~l~i~~~~~~ 373 (475)
T PLN02336 334 DVIYSR------DTILHIQ------D----------KPALFRSFFKWL----KPGGKVLISDYCRS 373 (475)
T ss_pred EEEEEC------CcccccC------C----------HHHHHHHHHHHc----CCCeEEEEEEeccC
Confidence 999873 2221111 1 134677777776 99999998875543
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.8e-08 Score=114.69 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=105.1
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC----------------CeEEEEecCCCCCc
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV----------------TNTIVCNYDGNELP 242 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~----------------~nv~v~~~D~~~~~ 242 (496)
+.+|||+|||+|..++.++...++ +.|+|+|+|+..++.++.|+.++++ .++.++++|.....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 468999999999999999998754 6999999999999999999998754 35889999986543
Q ss_pred cccCCCCcCEEEECCCCCCCCcccC-Cchhh--------ccC----CHHHH---HHHHHHHHHHHHHHHHhhhhcCCCCc
Q 010971 243 KVLGLNTVDRVLLDAPCSGTGVISK-DESVK--------TSK----SLEDI---QKCSYLQKQLILAAIDMVDANSKSGG 306 (496)
Q Consensus 243 ~~~~~~~fD~VLlDaPCSg~G~i~r-~p~~k--------~~~----s~~~i---~~l~~lQ~~LL~~A~~~l~~~lkpGG 306 (496)
... ...||+|+.+||+-..+-+.. .|+++ +.. ..... ..-....++|+..|...| +|||
T Consensus 198 ~~~-~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L----~pgG 272 (1082)
T PLN02672 198 RDN-NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVI----KPMG 272 (1082)
T ss_pred ccc-CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhc----cCCC
Confidence 211 126999999999876664321 22222 100 00000 223456688899998886 9999
Q ss_pred EEEEEeCCCCCcCCHHHHHHHHHhCCcEEee
Q 010971 307 YIVYSTCSIMVTENEAVIDYALKKRDVKLVP 337 (496)
Q Consensus 307 ~LVYSTCSi~~eENE~vV~~~L~~~~~~lv~ 337 (496)
.|++ -+.....+.|.+.++.+++++.+.
T Consensus 273 ~l~l---EiG~~q~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 273 IMIF---NMGGRPGQAVCERLFERRGFRITK 300 (1082)
T ss_pred EEEE---EECccHHHHHHHHHHHHCCCCeeE
Confidence 8874 455555666665566666655443
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-07 Score=92.38 Aligned_cols=141 Identities=23% Similarity=0.279 Sum_probs=95.9
Q ss_pred cchhHHHhc------CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCC
Q 010971 166 SSFLPVMAL------APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (496)
Q Consensus 166 sS~l~v~~L------~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~ 239 (496)
-|-|++.++ .+.+|.+||-+|||+|..-+|+++..+.+|.|+|+|.++.-.+.|...+++- +||+.+-.|++
T Consensus 55 RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr 132 (229)
T PF01269_consen 55 RSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDAR 132 (229)
T ss_dssp T-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TT
T ss_pred hhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCC
Confidence 356666654 3678999999999999999999999998999999999999999998777764 58999999998
Q ss_pred CCcccc-CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHH-HHHHHHhhhhcCCCCcEEEEEe--CCC
Q 010971 240 ELPKVL-GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQL-ILAAIDMVDANSKSGGYIVYST--CSI 315 (496)
Q Consensus 240 ~~~~~~-~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~L-L~~A~~~l~~~lkpGG~LVYST--CSi 315 (496)
...+.. --+.+|+|++|..= .-|-+| +.+|-.+| |+||+++.+- -|+
T Consensus 133 ~P~~Y~~lv~~VDvI~~DVaQ-------------------------p~Qa~I~~~Na~~fL----k~gG~~~i~iKa~si 183 (229)
T PF01269_consen 133 HPEKYRMLVEMVDVIFQDVAQ-------------------------PDQARIAALNARHFL----KPGGHLIISIKARSI 183 (229)
T ss_dssp SGGGGTTTS--EEEEEEE-SS-------------------------TTHHHHHHHHHHHHE----EEEEEEEEEEEHHHH
T ss_pred ChHHhhcccccccEEEecCCC-------------------------hHHHHHHHHHHHhhc----cCCcEEEEEEecCcc
Confidence 643221 12589999999761 124444 44554565 9999998774 335
Q ss_pred CC-cCCHHHHHHHHHh---CCcEEee
Q 010971 316 MV-TENEAVIDYALKK---RDVKLVP 337 (496)
Q Consensus 316 ~~-eENE~vV~~~L~~---~~~~lv~ 337 (496)
.. ...++|.+.-.++ .++++.+
T Consensus 184 D~t~~p~~vf~~e~~~L~~~~~~~~e 209 (229)
T PF01269_consen 184 DSTADPEEVFAEEVKKLKEEGFKPLE 209 (229)
T ss_dssp -SSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred cCcCCHHHHHHHHHHHHHHcCCChhe
Confidence 33 4666666655443 3565544
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=98.76 E-value=3e-08 Score=84.44 Aligned_cols=99 Identities=18% Similarity=0.291 Sum_probs=73.3
Q ss_pred EeeccCCCchHHHHHHHHcC--CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCCC
Q 010971 182 VIDMAAAPGGKTTYIAALMK--NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 182 VLDmcAgpGgKT~~lA~l~~--~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPC 259 (496)
|||+|||+|..+..++..+. ....++++|+|+..+..++++....++ ++.+++.|+..++.. .+.||.|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~--~~~~D~v~~---- 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFS--DGKFDLVVC---- 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHH--SSSEEEEEE----
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCccc--CCCeeEEEE----
Confidence 79999999999999999872 226899999999999999999998777 788999999998743 379999997
Q ss_pred CCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Q 010971 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (496)
Q Consensus 260 Sg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG 306 (496)
++.. + . ..++++ +..+|.+..+++ +|||
T Consensus 74 ~~~~-~------~-~~~~~~-------~~~ll~~~~~~l----~pgG 101 (101)
T PF13649_consen 74 SGLS-L------H-HLSPEE-------LEALLRRIARLL----RPGG 101 (101)
T ss_dssp -TTG-G------G-GSSHHH-------HHHHHHHHHHTE----EEEE
T ss_pred cCCc-c------C-CCCHHH-------HHHHHHHHHHHh----CCCC
Confidence 2211 1 0 123333 356788888876 9998
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.3e-07 Score=89.85 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=89.8
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEEECCC
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VLlDaP 258 (496)
.+|||+|||+|+.+..+++..+ ...|+++|+|+..+..++.++...|+. ++.+...|....+. .+.||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~---~~~fD~I~~~-- 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF---PDTYDLVFGF-- 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC---CCCCCEeehH--
Confidence 3799999999999999998874 368999999999999999999999886 47888888755432 2579999851
Q ss_pred CCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC---CCcC---------CHHHHHH
Q 010971 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI---MVTE---------NEAVIDY 326 (496)
Q Consensus 259 CSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi---~~eE---------NE~vV~~ 326 (496)
++ +... .....+|..+.++| +|||+++.++... .+.+ ...-...
T Consensus 75 ----~~---------------l~~~-~~~~~~l~~~~~~L----kpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 130 (224)
T smart00828 75 ----EV---------------IHHI-KDKMDLFSNISRHL----KDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAE 130 (224)
T ss_pred ----HH---------------HHhC-CCHHHHHHHHHHHc----CCCCEEEEEEcccccCccccccccccccCCHHHHHH
Confidence 11 1111 11245677777775 9999999876421 1111 1233445
Q ss_pred HHHhCCcEEeec
Q 010971 327 ALKKRDVKLVPC 338 (496)
Q Consensus 327 ~L~~~~~~lv~~ 338 (496)
++...++.++..
T Consensus 131 ~l~~~Gf~~~~~ 142 (224)
T smart00828 131 LLARNNLRVVEG 142 (224)
T ss_pred HHHHCCCeEEEe
Confidence 566677776653
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.9e-07 Score=96.42 Aligned_cols=113 Identities=20% Similarity=0.224 Sum_probs=80.7
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCc
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~f 250 (496)
..+.+..|.+|||+|||+|..+..++.. +...|+++|.|+..+.......+..+. .++.+...|+..++. .+.|
T Consensus 116 ~~l~~l~g~~VLDIGCG~G~~~~~la~~--g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~---~~~F 190 (322)
T PRK15068 116 PHLSPLKGRTVLDVGCGNGYHMWRMLGA--GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA---LKAF 190 (322)
T ss_pred HhhCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC---cCCc
Confidence 3456678899999999999999988876 235799999999887655544444442 468888899888764 3789
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
|.|++ .|++-+.+ ++ ..+|..+.+.| +|||.||.+|-.+
T Consensus 191 D~V~s------~~vl~H~~------dp----------~~~L~~l~~~L----kpGG~lvl~~~~i 229 (322)
T PRK15068 191 DTVFS------MGVLYHRR------SP----------LDHLKQLKDQL----VPGGELVLETLVI 229 (322)
T ss_pred CEEEE------CChhhccC------CH----------HHHHHHHHHhc----CCCcEEEEEEEEe
Confidence 99996 33332211 11 23577777775 9999999886443
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=9e-08 Score=105.96 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=88.6
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
.++..+|.+|||+|||+|..+..+++..+ .+.|+|+|+|+..++.+++++...+. ++.++.+|+..++..++++.||.
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~fedeSFDv 490 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFEKESVDT 490 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccccCCCCEEE
Confidence 44556789999999999999988888765 47999999999999999998876664 57778889887765555678999
Q ss_pred EEECCCCCC-CCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 253 VLLDAPCSG-TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 253 VLlDaPCSg-~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
|++..+--- ...+. .... .++. ....++|..+.+.| ||||+++.+.-++
T Consensus 491 VVsn~vLH~L~syIp-~~g~--~f~~-------edl~kiLreI~RVL----KPGGrLII~D~v~ 540 (677)
T PRK06922 491 IVYSSILHELFSYIE-YEGK--KFNH-------EVIKKGLQSAYEVL----KPGGRIIIRDGIM 540 (677)
T ss_pred EEEchHHHhhhhhcc-cccc--cccH-------HHHHHHHHHHHHHc----CCCcEEEEEeCcc
Confidence 997543100 00000 0000 0111 12345677777776 9999999875443
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.6e-08 Score=97.22 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=77.1
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.++.+|||+|||+|..+.+++.. ...|+|+|+|+..++.+++++...++ ++.+...|....+. .+.||.|++-
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~---~~~fD~I~~~ 191 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASI---QEEYDFILST 191 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccc---cCCccEEEEc
Confidence 34559999999999999999874 36899999999999999999999998 78888888765432 3789999873
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
..+. ....+ ....+|....+.| +|||++++.
T Consensus 192 ~vl~-------------~l~~~-------~~~~~l~~~~~~L----kpgG~~l~v 222 (287)
T PRK12335 192 VVLM-------------FLNRE-------RIPAIIKNMQEHT----NPGGYNLIV 222 (287)
T ss_pred chhh-------------hCCHH-------HHHHHHHHHHHhc----CCCcEEEEE
Confidence 3210 00111 2234566666665 999996653
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.3e-08 Score=95.07 Aligned_cols=94 Identities=20% Similarity=0.253 Sum_probs=80.8
Q ss_pred CcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCcc
Q 010971 165 ASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPK 243 (496)
Q Consensus 165 ~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~ 243 (496)
+...+..+.|+..||.+||+.|+|+|+.+.+|+..++++|.|+.+|++..|.+.+.+..++.|+. |+.+++-|......
T Consensus 92 ~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 92 PDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred ccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 33456678889999999999999999999999999999999999999999999999999999985 68888888755432
Q ss_pred ccCCCCcCEEEECCC
Q 010971 244 VLGLNTVDRVLLDAP 258 (496)
Q Consensus 244 ~~~~~~fD~VLlDaP 258 (496)
......+|.|++|.|
T Consensus 172 ~~ks~~aDaVFLDlP 186 (314)
T KOG2915|consen 172 LIKSLKADAVFLDLP 186 (314)
T ss_pred cccccccceEEEcCC
Confidence 223478999999988
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.3e-07 Score=95.57 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=80.1
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcC
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD 251 (496)
.+.+.+|.+|||+|||+|..+..++.. +...|+++|.|+..+..+...-+..+. .++.+...|...++.. ..||
T Consensus 116 ~l~~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~---~~FD 190 (314)
T TIGR00452 116 HLSPLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL---YAFD 190 (314)
T ss_pred hcCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC---CCcC
Confidence 346778999999999999998877764 335899999999888765443333332 3566777777766532 5799
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCC
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN 320 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eEN 320 (496)
.|++ .|++-+.+ ++ ...|..+.+.| +|||.||.+|..+...++
T Consensus 191 ~V~s------~gvL~H~~------dp----------~~~L~el~r~L----kpGG~Lvletl~i~g~~~ 233 (314)
T TIGR00452 191 TVFS------MGVLYHRK------SP----------LEHLKQLKHQL----VIKGELVLETLVIDGDLN 233 (314)
T ss_pred EEEE------cchhhccC------CH----------HHHHHHHHHhc----CCCCEEEEEEEEecCccc
Confidence 9986 34432211 11 22466666765 999999999876654443
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-07 Score=92.35 Aligned_cols=110 Identities=13% Similarity=0.128 Sum_probs=82.4
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcCEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
+.++.+|||+|||+|..+..++..+. +.+.|+++|+++.++..+++++...+. .++.++..|+..++ + ..+|.|
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~--~--~~~d~v 126 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--I--KNASMV 126 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--C--CCCCEE
Confidence 35788999999999999999988753 357999999999999999999988775 36889999998775 2 458988
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
++.-. + . .....+ ...+|..+.+.| +|||.|+.+.-
T Consensus 127 ~~~~~------l------~-~~~~~~-------~~~~l~~i~~~L----kpgG~l~i~d~ 162 (239)
T TIGR00740 127 ILNFT------L------Q-FLPPED-------RIALLTKIYEGL----NPNGVLVLSEK 162 (239)
T ss_pred eeecc------h------h-hCCHHH-------HHHHHHHHHHhc----CCCeEEEEeec
Confidence 75221 0 0 011111 235677777776 99999998754
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-07 Score=88.74 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=69.2
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
+..+++.++++|||+|||+|..|..++.. .+.|+|+|+++..+..+++++.. ..++.+++.|+..++. ....|
T Consensus 6 ~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~--~~~~~ 78 (169)
T smart00650 6 VRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDL--PKLQP 78 (169)
T ss_pred HHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCc--cccCC
Confidence 44567788999999999999999999886 36899999999999999999864 4578999999988753 22469
Q ss_pred CEEEECCCC
Q 010971 251 DRVLLDAPC 259 (496)
Q Consensus 251 D~VLlDaPC 259 (496)
|.|+.|+|.
T Consensus 79 d~vi~n~Py 87 (169)
T smart00650 79 YKVVGNLPY 87 (169)
T ss_pred CEEEECCCc
Confidence 999999995
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.9e-07 Score=92.30 Aligned_cols=123 Identities=16% Similarity=0.127 Sum_probs=91.3
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~ 247 (496)
..+..++..++.+|||+|||+|..+..+++..++ +.++++|. +..++.+++++...|+. ++.++.+|+...+ +
T Consensus 140 ~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~--~-- 213 (306)
T TIGR02716 140 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPE-LDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES--Y-- 213 (306)
T ss_pred HHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCC-CEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC--C--
Confidence 3345566778899999999999999999998754 78999997 78999999999999986 4889999986533 2
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCH
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE 321 (496)
..+|.|++- +++ ..|+.+. -.++|.++.+.| +|||+|+.....+...++.
T Consensus 214 ~~~D~v~~~------~~l-------h~~~~~~-------~~~il~~~~~~L----~pgG~l~i~d~~~~~~~~~ 263 (306)
T TIGR02716 214 PEADAVLFC------RIL-------YSANEQL-------STIMCKKAFDAM----RSGGRLLILDMVIDDPENP 263 (306)
T ss_pred CCCCEEEeE------hhh-------hcCChHH-------HHHHHHHHHHhc----CCCCEEEEEEeccCCCCCc
Confidence 347998761 111 1222222 145788888886 9999999888766554443
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-08 Score=101.58 Aligned_cols=163 Identities=18% Similarity=0.215 Sum_probs=99.8
Q ss_pred CcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHc------CCCcEEEEEeCCHHHHHHHHHHHHHcCCCe--EEEEec
Q 010971 165 ASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALM------KNTGLIYANEMKASRLKSLTANLHRMGVTN--TIVCNY 236 (496)
Q Consensus 165 ~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~------~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n--v~v~~~ 236 (496)
.-+.+.+.++.+.++.+|||.|||+|+..+.+...+ .....++|+|+++..+..+.-|+.-.|+.. ..+...
T Consensus 33 ~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~ 112 (311)
T PF02384_consen 33 EIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQG 112 (311)
T ss_dssp HHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred HHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccc
Confidence 334577777889999999999999999998877754 244689999999999999998887666543 457788
Q ss_pred CCCCCccccCCCCcCEEEECCCCCCCCcccC--CchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 237 DGNELPKVLGLNTVDRVLLDAPCSGTGVISK--DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 237 D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r--~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
|....+.......||.||.+||....+.... ..+.+|... ...-...+...+.++++.| ++||++++..-+
T Consensus 113 d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Fi~~~l~~L----k~~G~~~~Ilp~ 185 (311)
T PF02384_consen 113 DSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKY---FPPKSNAEYAFIEHALSLL----KPGGRAAIILPN 185 (311)
T ss_dssp -TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTC---SSSTTEHHHHHHHHHHHTE----EEEEEEEEEEEH
T ss_pred ccccccccccccccccccCCCCcccccccccccccccccccc---CCCccchhhhhHHHHHhhc----ccccceeEEecc
Confidence 8765543322468999999999887643111 011122211 0000111223678888887 999997766553
Q ss_pred -CCCcCC--HHHHHHHHHhCCcE
Q 010971 315 -IMVTEN--EAVIDYALKKRDVK 334 (496)
Q Consensus 315 -i~~eEN--E~vV~~~L~~~~~~ 334 (496)
++...+ ..+-++++++..++
T Consensus 186 ~~L~~~~~~~~iR~~ll~~~~i~ 208 (311)
T PF02384_consen 186 GFLFSSSSEKKIRKYLLENGYIE 208 (311)
T ss_dssp HHHHGSTHHHHHHHHHHHHEEEE
T ss_pred hhhhccchHHHHHHHHHhhchhh
Confidence 322232 34556777776433
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.71 E-value=2e-07 Score=89.23 Aligned_cols=113 Identities=19% Similarity=0.244 Sum_probs=83.5
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
.+...++.+|||+|||+|..+..++...+..+.++++|+++..+..+++++. ...++.+...|+..++ +..+.||+
T Consensus 34 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~--~~~~~~D~ 109 (223)
T TIGR01934 34 LIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALP--FEDNSFDA 109 (223)
T ss_pred HhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCC--CCCCcEEE
Confidence 3445578999999999999999999887644789999999999999998876 3346788888887765 23368999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
|++.- + +..- .+ -..+|..+..+| +|||+|+..+.+.
T Consensus 110 i~~~~---~---~~~~---------~~-------~~~~l~~~~~~L----~~gG~l~~~~~~~ 146 (223)
T TIGR01934 110 VTIAF---G---LRNV---------TD-------IQKALREMYRVL----KPGGRLVILEFSK 146 (223)
T ss_pred EEEee---e---eCCc---------cc-------HHHHHHHHHHHc----CCCcEEEEEEecC
Confidence 98621 1 1100 01 124577777776 9999999877664
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3e-08 Score=97.38 Aligned_cols=106 Identities=18% Similarity=0.181 Sum_probs=78.9
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
-+|.+|||+|||-|..+..||++- ..|+|+|+++..++.++......|+. +........++.. ..++||+|+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~--~~~~FDvV~c- 130 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLAS--AGGQFDVVTC- 130 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHHh--cCCCccEEEE-
Confidence 479999999999999999998862 68999999999999999999998885 3232223333321 1268999997
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.+-+.....- ..++.++.++| ||||.++.||-.
T Consensus 131 --------------------mEVlEHv~dp-~~~~~~c~~lv----kP~G~lf~STin 163 (243)
T COG2227 131 --------------------MEVLEHVPDP-ESFLRACAKLV----KPGGILFLSTIN 163 (243)
T ss_pred --------------------hhHHHccCCH-HHHHHHHHHHc----CCCcEEEEeccc
Confidence 1223333222 33788888987 999999999866
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.4e-08 Score=92.87 Aligned_cols=91 Identities=16% Similarity=0.169 Sum_probs=65.0
Q ss_pred cccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec
Q 010971 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236 (496)
Q Consensus 157 ~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~ 236 (496)
...|-+...-|.+ ..++..-++.++||++||.|.-+++||++ .-.|+|+|.|+..++.+.+.+++.+++ |.+...
T Consensus 10 ~kky~~~~~hs~v-~~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~ 84 (192)
T PF03848_consen 10 HKKYGLTPTHSEV-LEAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVA 84 (192)
T ss_dssp HHHHTB----HHH-HHHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-
T ss_pred HHhhCCCCCcHHH-HHHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEe
Confidence 3344455555553 45566666789999999999999999986 248999999999999999999999887 888888
Q ss_pred CCCCCccccCCCCcCEEEE
Q 010971 237 DGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 237 D~~~~~~~~~~~~fD~VLl 255 (496)
|...+. + .+.||.|++
T Consensus 85 Dl~~~~--~-~~~yD~I~s 100 (192)
T PF03848_consen 85 DLNDFD--F-PEEYDFIVS 100 (192)
T ss_dssp BGCCBS----TTTEEEEEE
T ss_pred cchhcc--c-cCCcCEEEE
Confidence 876654 2 267999975
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.1e-08 Score=99.42 Aligned_cols=90 Identities=22% Similarity=0.227 Sum_probs=77.5
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCC--C
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL--N 248 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~--~ 248 (496)
+.+|.+++|..|||++||.||.|.+|+..+++.|.|+|+|.++..+..+++++.. ..++.+++.|...+...... .
T Consensus 12 l~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~ 89 (296)
T PRK00050 12 VDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLG 89 (296)
T ss_pred HHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCC
Confidence 4567788999999999999999999999987679999999999999999998876 46799999999887655432 2
Q ss_pred CcCEEEECCCCCCC
Q 010971 249 TVDRVLLDAPCSGT 262 (496)
Q Consensus 249 ~fD~VLlDaPCSg~ 262 (496)
.||.|++|-=||..
T Consensus 90 ~vDgIl~DLGvSs~ 103 (296)
T PRK00050 90 KVDGILLDLGVSSP 103 (296)
T ss_pred ccCEEEECCCcccc
Confidence 79999999888865
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.7e-07 Score=88.37 Aligned_cols=113 Identities=16% Similarity=0.140 Sum_probs=82.2
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
...+.+.++.+|||+|||+|..+..++.. ...++++|+++..+..+++++...+. ++.+...|...++.. ..+.|
T Consensus 41 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~f 115 (233)
T PRK05134 41 REHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAE-HPGQF 115 (233)
T ss_pred HHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhh-cCCCc
Confidence 33444567899999999999999888775 25799999999999999999988777 566667777665422 23689
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
|+|++.-.+... + . ...+|..+.+++ +|||+|+.+++.
T Consensus 116 D~Ii~~~~l~~~------~------~----------~~~~l~~~~~~L----~~gG~l~v~~~~ 153 (233)
T PRK05134 116 DVVTCMEMLEHV------P------D----------PASFVRACAKLV----KPGGLVFFSTLN 153 (233)
T ss_pred cEEEEhhHhhcc------C------C----------HHHHHHHHHHHc----CCCcEEEEEecC
Confidence 999874221111 0 0 124567777775 999999998775
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-07 Score=94.37 Aligned_cols=118 Identities=18% Similarity=0.166 Sum_probs=90.3
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCC-ccccC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNEL-PKVLG 246 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~-~~~~~ 246 (496)
+...++....-.+||++|++.|-.|++||..++..|.|+++|.++.+.+.++.++++.|+. +|.++.+|+... +....
T Consensus 70 lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~ 149 (247)
T PLN02589 70 FLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIE 149 (247)
T ss_pred HHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHh
Confidence 3344444445569999999999999999999888899999999999999999999999985 499999998764 32211
Q ss_pred ----CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 247 ----LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 247 ----~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.+.||.||+|+- . ..+...+..++.+| +|||.||.-.+-+
T Consensus 150 ~~~~~~~fD~iFiDad------------------K-------~~Y~~y~~~~l~ll----~~GGviv~DNvl~ 193 (247)
T PLN02589 150 DGKYHGTFDFIFVDAD------------------K-------DNYINYHKRLIDLV----KVGGVIGYDNTLW 193 (247)
T ss_pred ccccCCcccEEEecCC------------------H-------HHhHHHHHHHHHhc----CCCeEEEEcCCCC
Confidence 258999999974 0 11233456666775 9999998765543
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2e-07 Score=93.65 Aligned_cols=114 Identities=16% Similarity=0.203 Sum_probs=84.5
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
.++.+|||+|+|.|..+..++...+ ...|+++|+++..++.+++++...+. .++.++.+|+..+.... ...||+|++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~-~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH-RHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC-CCCCCEEEE
Confidence 3567899999999999999988875 47899999999999999998765543 57899999997763322 258999999
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
|+- .+.++ |.. ....+++..+.+.| +|||.|+...++
T Consensus 143 D~~-~~~~~----~~~-------------l~t~efl~~~~~~L----~pgGvlvin~~~ 179 (262)
T PRK04457 143 DGF-DGEGI----IDA-------------LCTQPFFDDCRNAL----SSDGIFVVNLWS 179 (262)
T ss_pred eCC-CCCCC----ccc-------------cCcHHHHHHHHHhc----CCCcEEEEEcCC
Confidence 963 22221 110 01245677777776 999999886443
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.2e-07 Score=98.26 Aligned_cols=112 Identities=16% Similarity=0.131 Sum_probs=80.9
Q ss_pred HHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCC
Q 010971 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~ 249 (496)
....+.+++|.+|||+|||+|+.+.+++...+ +.|+++|+|+..++.+++++.. + ++.+...|...+ .+.
T Consensus 159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~~--l-~v~~~~~D~~~l-----~~~ 228 (383)
T PRK11705 159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCAG--L-PVEIRLQDYRDL-----NGQ 228 (383)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhcc--C-eEEEEECchhhc-----CCC
Confidence 34556788999999999999999999988753 5899999999999999998853 3 366777787654 267
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
||.|++- +++..- .. .....++..+.++| +|||+++.++.+.
T Consensus 229 fD~Ivs~------~~~ehv-------g~-------~~~~~~l~~i~r~L----kpGG~lvl~~i~~ 270 (383)
T PRK11705 229 FDRIVSV------GMFEHV-------GP-------KNYRTYFEVVRRCL----KPDGLFLLHTIGS 270 (383)
T ss_pred CCEEEEe------CchhhC-------Ch-------HHHHHHHHHHHHHc----CCCcEEEEEEccC
Confidence 9999862 111100 00 11134567777775 9999999876543
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.1e-08 Score=90.82 Aligned_cols=132 Identities=25% Similarity=0.222 Sum_probs=75.7
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC------ccccC--C
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL------PKVLG--L 247 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~------~~~~~--~ 247 (496)
+..+.+|||+||||||+|..+.+..+..+.|+|+|+.+. ....++..+.+|.... ...+. .
T Consensus 21 ~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~ 89 (181)
T PF01728_consen 21 PGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESG 89 (181)
T ss_dssp TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTT
T ss_pred cccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccc
Confidence 335699999999999999999988755689999999876 2224555555554331 11121 2
Q ss_pred CCcCEEEECC--CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHH
Q 010971 248 NTVDRVLLDA--PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325 (496)
Q Consensus 248 ~~fD~VLlDa--PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~ 325 (496)
..||+|++|. +|+|... .... ....+....|.-|+..| +|||.+|.-+... .+.+.++.
T Consensus 90 ~~~dlv~~D~~~~~~g~~~----------~d~~---~~~~l~~~~l~~a~~~L----~~gG~~v~K~~~~--~~~~~~~~ 150 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRN----------IDEF---ISIRLILSQLLLALELL----KPGGTFVIKVFKG--PEIEELIY 150 (181)
T ss_dssp CSESEEEE-------SSHH----------SSHH---HHHHHHHHHHHHHHHHH----CTTEEEEEEESSS--TTSHHHHH
T ss_pred cCcceeccccccCCCCchh----------hHHH---HHHHHHHHHHHHHHhhh----cCCCEEEEEeccC--ccHHHHHH
Confidence 5899999997 5555421 1111 11233333445566665 9999988766553 23345555
Q ss_pred HHHHhC-CcEEee
Q 010971 326 YALKKR-DVKLVP 337 (496)
Q Consensus 326 ~~L~~~-~~~lv~ 337 (496)
.+-... .+.++.
T Consensus 151 ~l~~~F~~v~~~K 163 (181)
T PF01728_consen 151 LLKRCFSKVKIVK 163 (181)
T ss_dssp HHHHHHHHEEEEE
T ss_pred HHHhCCeEEEEEE
Confidence 443332 344443
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.7e-07 Score=94.15 Aligned_cols=104 Identities=16% Similarity=0.168 Sum_probs=77.3
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.++.+|||+|||+|..+..++...+. +.|+++|+++..++.++++.. ..++.++..|+..++ +..+.||+|++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~-~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp--~~~~sFDvVIs~ 185 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLP--FPTDYADRYVSA 185 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCC--CCCCceeEEEEc
Confidence 46889999999999999988887643 689999999999999988764 346778889987765 234689999873
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
. ++..-+ . ...+|.++.+.| +|||+++...
T Consensus 186 ~------~L~~~~------d----------~~~~L~e~~rvL----kPGG~LvIi~ 215 (340)
T PLN02490 186 G------SIEYWP------D----------PQRGIKEAYRVL----KIGGKACLIG 215 (340)
T ss_pred C------hhhhCC------C----------HHHHHHHHHHhc----CCCcEEEEEE
Confidence 2 111111 1 123578888876 9999998753
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.6e-07 Score=98.76 Aligned_cols=120 Identities=19% Similarity=0.135 Sum_probs=82.3
Q ss_pred hhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCC
Q 010971 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 168 ~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~ 247 (496)
......+.+.++.+|||+|||+|..+..++... +.|+|+|+++..++...... ....++.+++.|+......++.
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~--~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESIN--GHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHh--ccCCceEEEEecccccccCCCC
Confidence 344455666778899999999999999999863 58999999999987654321 1245788888998643212334
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
+.||.|++..++.- .+..+ ...+|..+.+.| +|||+|++...++.
T Consensus 102 ~~fD~I~~~~~l~~-------------l~~~~-------~~~~l~~~~r~L----k~gG~l~~~d~~~~ 146 (475)
T PLN02336 102 GSVDLIFSNWLLMY-------------LSDKE-------VENLAERMVKWL----KVGGYIFFRESCFH 146 (475)
T ss_pred CCEEEEehhhhHHh-------------CCHHH-------HHHHHHHHHHhc----CCCeEEEEEeccCC
Confidence 78999998654211 11111 134667777765 99999988755444
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-07 Score=90.28 Aligned_cols=134 Identities=16% Similarity=0.281 Sum_probs=92.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC-ccccCCCCcCEEEEC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~-~~~~~~~~fD~VLlD 256 (496)
....+||+|||.|...+.+|...++ ..++|+|++..++..+...+.+.++.|+.+++.|+..+ ...+.++++|.|.+.
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe
Confidence 3448999999999999999999865 78999999999999999999999999999999999884 444555899999987
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH---h--C
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK---K--R 331 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~---~--~ 331 (496)
=| ||..+.+-....+ .|..+|....+.| +|||.|...| .++....++++ . .
T Consensus 96 FP---------DPWpK~rH~krRl-----~~~~fl~~~~~~L----~~gG~l~~~T------D~~~y~~~~~~~~~~~~~ 151 (195)
T PF02390_consen 96 FP---------DPWPKKRHHKRRL-----VNPEFLELLARVL----KPGGELYFAT------DVEEYAEWMLEQFEESHP 151 (195)
T ss_dssp S--------------SGGGGGGST-----TSHHHHHHHHHHE----EEEEEEEEEE------S-HHHHHHHHHHHHHHST
T ss_pred CC---------CCCcccchhhhhc-----CCchHHHHHHHHc----CCCCEEEEEe------CCHHHHHHHHHHHHhcCc
Confidence 66 4433322111111 2345566666665 9999997765 44555555443 2 3
Q ss_pred CcEEe
Q 010971 332 DVKLV 336 (496)
Q Consensus 332 ~~~lv 336 (496)
.++.+
T Consensus 152 ~f~~~ 156 (195)
T PF02390_consen 152 GFENI 156 (195)
T ss_dssp TEEEE
T ss_pred CeEEc
Confidence 56655
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.6e-07 Score=87.56 Aligned_cols=108 Identities=15% Similarity=0.115 Sum_probs=80.8
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
..+.+|||+|||+|..+..+++.. ..++++|+++..+..++.++...++.++.+...|+..++... .+.||.|++.
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~i~~~ 119 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG-AKSFDVVTCM 119 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC-CCCccEEEeh
Confidence 358899999999999998887642 469999999999999999999888767888888877664322 3689999873
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.. + . .......+|..+.+.+ +|||.++.++|.
T Consensus 120 ~~------l---------------~-~~~~~~~~l~~~~~~L----~~gG~l~i~~~~ 151 (224)
T TIGR01983 120 EV------L---------------E-HVPDPQAFIRACAQLL----KPGGILFFSTIN 151 (224)
T ss_pred hH------H---------------H-hCCCHHHHHHHHHHhc----CCCcEEEEEecC
Confidence 21 0 0 0011234677777775 999999988874
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.3e-07 Score=85.73 Aligned_cols=72 Identities=18% Similarity=0.148 Sum_probs=61.8
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
+.++.+|||+|||+|..+..++.. ...|+|+|+++..+..+++++...+. .++.+...|+..++ ..||+|+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~fD~ii 124 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-----GEFDIVV 124 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-----CCcCEEE
Confidence 457899999999999999998874 25899999999999999999988876 46888889987654 5799998
Q ss_pred E
Q 010971 255 L 255 (496)
Q Consensus 255 l 255 (496)
+
T Consensus 125 ~ 125 (219)
T TIGR02021 125 C 125 (219)
T ss_pred E
Confidence 6
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.9e-07 Score=87.33 Aligned_cols=103 Identities=18% Similarity=0.208 Sum_probs=76.3
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
..+.+|||+|||+|..+.+++...+ ...++++|+++..+..+..++. .++.++..|...++. ..+.||+|++.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~--~~~~fD~vi~~ 105 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPL--EDSSFDLIVSN 105 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCC--CCCceeEEEEh
Confidence 3457999999999999999998865 4679999999999988877654 367788888877652 34789999975
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
..+... .. -..+|..+.++| +|||.+++++
T Consensus 106 ~~l~~~------------~~----------~~~~l~~~~~~L----~~~G~l~~~~ 135 (240)
T TIGR02072 106 LALQWC------------DD----------LSQALSELARVL----KPGGLLAFST 135 (240)
T ss_pred hhhhhc------------cC----------HHHHHHHHHHHc----CCCcEEEEEe
Confidence 432110 00 123567777765 9999999875
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.5e-07 Score=99.02 Aligned_cols=114 Identities=16% Similarity=0.262 Sum_probs=85.2
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC-ccccCC--CC
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGL--NT 249 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~-~~~~~~--~~ 249 (496)
.+...++..+||+|||+|..++.+|+. .+.|++++++++.+..+..|++.+|++|..++++-+.++ +..+.. ..
T Consensus 378 ~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~ 454 (534)
T KOG2187|consen 378 WAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDS 454 (534)
T ss_pred HhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCC
Confidence 356677899999999999999988875 468999999999999999999999999999999855443 333311 23
Q ss_pred cC-EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCc
Q 010971 250 VD-RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT 318 (496)
Q Consensus 250 fD-~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~e 318 (496)
-+ ++++|||-.|.-. .+..+++.. +.--+|||.+|..+..
T Consensus 455 ~~~v~iiDPpR~Glh~-------------------------~~ik~l~~~----~~~~rlvyvSCn~~t~ 495 (534)
T KOG2187|consen 455 ETLVAIIDPPRKGLHM-------------------------KVIKALRAY----KNPRRLVYVSCNPHTA 495 (534)
T ss_pred CceEEEECCCcccccH-------------------------HHHHHHHhc----cCccceEEEEcCHHHh
Confidence 45 8899999665421 133333332 3336899999998753
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-06 Score=89.20 Aligned_cols=127 Identities=17% Similarity=0.169 Sum_probs=86.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEecCCCCCccccCCCCcCE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-----VTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g-----~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
...+|||+|+|.|+.+..++.. .+...|+++|+++..++.+++.+..++ -.++.++..|+..+... ..+.||+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~~~yDv 153 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-TENSFDV 153 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-CCCcccE
Confidence 4579999999999999888764 234689999999999999999987653 24588999999876432 2368999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHh
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~ 330 (496)
|++|++-- .| | ...+ ...+++..+.+.| +|||.+|.-+-+. ......+..+++.
T Consensus 154 Ii~D~~dp-~~-----~-------~~~l-----~t~ef~~~~~~~L----~~gGvlv~~~~~~--~~~~~~~~~i~~t 207 (283)
T PRK00811 154 IIVDSTDP-VG-----P-------AEGL-----FTKEFYENCKRAL----KEDGIFVAQSGSP--FYQADEIKDMHRK 207 (283)
T ss_pred EEECCCCC-CC-----c-------hhhh-----hHHHHHHHHHHhc----CCCcEEEEeCCCc--ccCHHHHHHHHHH
Confidence 99997410 11 0 0111 1245566666665 9999998754332 2334455554443
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-06 Score=90.34 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=66.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCe-EEEE-ecCCCCCcccc--CCCCcCE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-GVTN-TIVC-NYDGNELPKVL--GLNTVDR 252 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~-g~~n-v~v~-~~D~~~~~~~~--~~~~fD~ 252 (496)
.+.+|||+|||+|+....|++...+ ..++|+|+++..++.++.|++.+ ++.+ |.+. +.|...+.... ..+.||.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~-~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYG-WRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 5789999999999999988887653 68999999999999999999999 7864 6554 33433332211 2368999
Q ss_pred EEECCCCCCCC
Q 010971 253 VLLDAPCSGTG 263 (496)
Q Consensus 253 VLlDaPCSg~G 263 (496)
|+|+||.-.++
T Consensus 193 ivcNPPf~~s~ 203 (321)
T PRK11727 193 TLCNPPFHASA 203 (321)
T ss_pred EEeCCCCcCcc
Confidence 99999987654
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.8e-06 Score=90.12 Aligned_cols=127 Identities=14% Similarity=0.153 Sum_probs=81.2
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH-----HHHcC--CCeEEEEecCCCCCccc
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTAN-----LHRMG--VTNTIVCNYDGNELPKV 244 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~n-----l~r~g--~~nv~v~~~D~~~~~~~ 244 (496)
++..+.| .+||++|+|.|+.+..+... ++...|+++|+++..++.++.. +.+.+ -.++.++..|+..+...
T Consensus 145 m~~h~~P-krVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~ 222 (374)
T PRK01581 145 MSKVIDP-KRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS 222 (374)
T ss_pred HHhCCCC-CEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh
Confidence 3334444 59999999999966555543 3446899999999999999862 22222 34689999999876433
Q ss_pred cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHH
Q 010971 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324 (496)
Q Consensus 245 ~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV 324 (496)
. .+.||+|++|.|= |... ....+ ...+.+..+.+.| +|||.+|.-..|. .....++
T Consensus 223 ~-~~~YDVIIvDl~D---------P~~~---~~~~L-----yT~EFy~~~~~~L----kPgGV~V~Qs~sp--~~~~~~~ 278 (374)
T PRK01581 223 P-SSLYDVIIIDFPD---------PATE---LLSTL-----YTSELFARIATFL----TEDGAFVCQSNSP--ADAPLVY 278 (374)
T ss_pred c-CCCccEEEEcCCC---------cccc---chhhh-----hHHHHHHHHHHhc----CCCcEEEEecCCh--hhhHHHH
Confidence 2 3689999999761 1100 00111 1144566666665 9999988764433 3344443
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.5e-06 Score=86.24 Aligned_cols=91 Identities=15% Similarity=0.040 Sum_probs=76.0
Q ss_pred chhHHHhcCCCCCC--eEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc------CC---CeEEEEe
Q 010971 167 SFLPVMALAPQEKE--RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM------GV---TNTIVCN 235 (496)
Q Consensus 167 S~l~v~~L~~~~g~--~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~------g~---~nv~v~~ 235 (496)
....+.++.+++|. +|||++||.|.-++.++.+ .+.|+++|.++.-...+..+++++ +. .++.+++
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 35668888889998 9999999999999999887 357999999999999999999996 43 5688999
Q ss_pred cCCCCCccccCCCCcCEEEECCCCCC
Q 010971 236 YDGNELPKVLGLNTVDRVLLDAPCSG 261 (496)
Q Consensus 236 ~D~~~~~~~~~~~~fD~VLlDaPCSg 261 (496)
.|+..+..... ..||+|.+|||.-.
T Consensus 152 ~da~~~L~~~~-~~fDVVYlDPMfp~ 176 (250)
T PRK10742 152 ASSLTALTDIT-PRPQVVYLDPMFPH 176 (250)
T ss_pred CcHHHHHhhCC-CCCcEEEECCCCCC
Confidence 99877644332 47999999999643
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.9e-07 Score=92.34 Aligned_cols=97 Identities=13% Similarity=0.113 Sum_probs=78.4
Q ss_pred EEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEecCC
Q 010971 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDG 238 (496)
Q Consensus 160 ~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g-~~nv~v~~~D~ 238 (496)
|+++.......+..+.+.++++|||+|||+|..|..++... +.|+|+|+|+..+..+++++...+ ..++.++++|+
T Consensus 18 FL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da 94 (294)
T PTZ00338 18 ILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA 94 (294)
T ss_pred ccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence 43333333445666778899999999999999999988762 579999999999999999999887 46799999999
Q ss_pred CCCccccCCCCcCEEEECCCCCCCC
Q 010971 239 NELPKVLGLNTVDRVLLDAPCSGTG 263 (496)
Q Consensus 239 ~~~~~~~~~~~fD~VLlDaPCSg~G 263 (496)
..++ + ..||.|+.+.|+..+.
T Consensus 95 l~~~--~--~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 95 LKTE--F--PYFDVCVANVPYQISS 115 (294)
T ss_pred hhhc--c--cccCEEEecCCcccCc
Confidence 7754 2 4699999999987653
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.1e-07 Score=88.37 Aligned_cols=122 Identities=16% Similarity=0.246 Sum_probs=97.1
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCC-CCcCEEEECCC
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL-NTVDRVLLDAP 258 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~-~~fD~VLlDaP 258 (496)
..+||+|||.|...+++|+.-+. .-++|+|+....+..+...+.+.|++|+.+++.|+..+-..+.. ++.|.|.+.=|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~-~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPE-KNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCC-CCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 58999999999999999999765 57999999999999999999999999999999999887554544 48999998766
Q ss_pred CCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 010971 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 259 CSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~ 326 (496)
||.-|.+.....+ +|...|....+.| +|||.|.+.| .++....+
T Consensus 129 ---------DPWpKkRH~KRRl-----~~~~fl~~~a~~L----k~gG~l~~aT------D~~~y~e~ 172 (227)
T COG0220 129 ---------DPWPKKRHHKRRL-----TQPEFLKLYARKL----KPGGVLHFAT------DNEEYFEW 172 (227)
T ss_pred ---------CCCCCcccccccc-----CCHHHHHHHHHHc----cCCCEEEEEe------cCHHHHHH
Confidence 5555444333333 4566677777775 9999998766 45666666
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-06 Score=87.41 Aligned_cols=72 Identities=13% Similarity=0.275 Sum_probs=58.1
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCC--cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNT--GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~--g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
..+.+|||+|||+|..+..++..++.. ..|+++|+|+..+..+.++ ..++.+..+|+..+| +..+.||.|+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~lp--~~~~sfD~I~ 156 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRLP--FADQSLDAII 156 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccCC--CcCCceeEEE
Confidence 456889999999999999999877543 3799999999999888654 246778888988876 3447899998
Q ss_pred E
Q 010971 255 L 255 (496)
Q Consensus 255 l 255 (496)
.
T Consensus 157 ~ 157 (272)
T PRK11088 157 R 157 (272)
T ss_pred E
Confidence 5
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.8e-06 Score=86.82 Aligned_cols=112 Identities=14% Similarity=0.208 Sum_probs=75.9
Q ss_pred CCCCeEeeccCCCch----HHHHHHHHcCC----CcEEEEEeCCHHHHHHHHHHHH------Hc-------------C--
Q 010971 177 QEKERVIDMAAAPGG----KTTYIAALMKN----TGLIYANEMKASRLKSLTANLH------RM-------------G-- 227 (496)
Q Consensus 177 ~~g~~VLDmcAgpGg----KT~~lA~l~~~----~g~V~A~D~s~~rl~~l~~nl~------r~-------------g-- 227 (496)
.++.+|||+|||+|- .++.+++.++. ...|+|+|+|+..++.+++.+- .+ |
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 356799999999996 45555665442 4689999999999999987531 00 0
Q ss_pred -----C-CeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010971 228 -----V-TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDAN 301 (496)
Q Consensus 228 -----~-~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~ 301 (496)
+ .+|.+...|....+. ..+.||+|+| .. ++ ...+ ...+.+++....+.|
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~--~~~~fD~I~c----rn--vl-------~yf~-------~~~~~~~l~~l~~~L--- 232 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESP--PLGDFDLIFC----RN--VL-------IYFD-------EPTQRKLLNRFAEAL--- 232 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCC--ccCCCCEEEe----ch--hH-------HhCC-------HHHHHHHHHHHHHHh---
Confidence 1 257888888877653 2378999996 11 10 0011 134566788888876
Q ss_pred CCCCcEEEEEeCC
Q 010971 302 SKSGGYIVYSTCS 314 (496)
Q Consensus 302 lkpGG~LVYSTCS 314 (496)
+|||+|+....-
T Consensus 233 -~pGG~L~lg~~E 244 (264)
T smart00138 233 -KPGGYLFLGHSE 244 (264)
T ss_pred -CCCeEEEEECcc
Confidence 999999976543
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.3e-06 Score=83.76 Aligned_cols=113 Identities=17% Similarity=0.182 Sum_probs=76.8
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~ 248 (496)
+...+|.-..-.++||+|||.|..|..||... ..|+|+|+++..++.+++++.. ..+|.+...|...+ .+.+
T Consensus 34 ~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~---~P~~ 105 (201)
T PF05401_consen 34 TLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG--LPHVEWIQADVPEF---WPEG 105 (201)
T ss_dssp HHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT------SS
T ss_pred HHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCC---CCCC
Confidence 33345655667899999999999999998874 5899999999999999999975 46899999988654 3458
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCH-HHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSL-EDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~-~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
.||+|++ |..+ +-++. +++ ..++......| .|||.||..+-
T Consensus 106 ~FDLIV~----SEVl---------YYL~~~~~L-------~~~l~~l~~~L----~pgG~LV~g~~ 147 (201)
T PF05401_consen 106 RFDLIVL----SEVL---------YYLDDAEDL-------RAALDRLVAAL----APGGHLVFGHA 147 (201)
T ss_dssp -EEEEEE----ES-G---------GGSSSHHHH-------HHHHHHHHHTE----EEEEEEEEEEE
T ss_pred CeeEEEE----ehHh---------HcCCCHHHH-------HHHHHHHHHHh----CCCCEEEEEEe
Confidence 9999986 3333 33332 332 23345555554 99999999654
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.7e-07 Score=89.01 Aligned_cols=93 Identities=15% Similarity=0.177 Sum_probs=75.0
Q ss_pred EEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCC
Q 010971 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (496)
Q Consensus 160 ~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~ 239 (496)
|.+........+..+++.+|++|||+|||+|..|..+++. ...|+|+|+++..++.+++++.. ..++.++++|+.
T Consensus 11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~ 85 (258)
T PRK14896 11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDAL 85 (258)
T ss_pred ccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccc
Confidence 4443333445566677889999999999999999999987 25899999999999999988865 468999999998
Q ss_pred CCccccCCCCcCEEEECCCCCC
Q 010971 240 ELPKVLGLNTVDRVLLDAPCSG 261 (496)
Q Consensus 240 ~~~~~~~~~~fD~VLlDaPCSg 261 (496)
.++ + ..||.|+.++|..-
T Consensus 86 ~~~--~--~~~d~Vv~NlPy~i 103 (258)
T PRK14896 86 KVD--L--PEFNKVVSNLPYQI 103 (258)
T ss_pred cCC--c--hhceEEEEcCCccc
Confidence 765 2 45899999999753
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.8e-06 Score=85.54 Aligned_cols=124 Identities=14% Similarity=0.101 Sum_probs=84.6
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEecCCCCCccccCCCCcCEEE
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----VTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g----~~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
..+||++|+|.|+.+..++... ....++++|+++..++.+++++..++ ..++.+...|+..+-... .+.||+|+
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-~~~yDvIi 150 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-ENTFDVII 150 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-CCCccEEE
Confidence 4499999999999887776653 24689999999999999999886653 245778888987653222 36899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHH
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L 328 (496)
+|++-. .+. . ..+ ...+.+..+.+.| +|||.++..++|.. -+...+..+.
T Consensus 151 ~D~~~~-~~~-----~-------~~l-----~~~ef~~~~~~~L----~pgG~lv~~~~~~~--~~~~~~~~~~ 200 (270)
T TIGR00417 151 VDSTDP-VGP-----A-------ETL-----FTKEFYELLKKAL----NEDGIFVAQSESPW--IQLELITDLK 200 (270)
T ss_pred EeCCCC-CCc-----c-------cch-----hHHHHHHHHHHHh----CCCcEEEEcCCCcc--cCHHHHHHHH
Confidence 998621 111 0 011 1134556666665 99999998877643 3344444433
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.3e-08 Score=82.85 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=48.0
Q ss_pred eeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 183 IDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 183 LDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
||+|||+|..+.++++.. +...++++|+|+..+..+++++...+..+...+..+..........+.||.|++
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~ 72 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVA 72 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEE
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehh
Confidence 799999999999999987 458999999999999999999999887665555555444332222258999997
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-06 Score=86.59 Aligned_cols=103 Identities=14% Similarity=0.176 Sum_probs=72.9
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC-CCe------EEEEecCCCCCccccCCC
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-VTN------TIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g-~~n------v~v~~~D~~~~~~~~~~~ 248 (496)
|-.|..|||+|||.|-.|.+||.+- ..|+|+|+++..++.+++. +.+. +.+ +.+.+.|+..+. +
T Consensus 87 ~~~g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~~-----~ 157 (282)
T KOG1270|consen 87 PLLGMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGLT-----G 157 (282)
T ss_pred ccCCceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhcc-----c
Confidence 4457889999999999999999873 6899999999999999988 4443 222 223344443332 5
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
.||.|+| .++.+....-..++...+.+| +|||.|+.||-
T Consensus 158 ~fDaVvc----------------------sevleHV~dp~~~l~~l~~~l----kP~G~lfitti 196 (282)
T KOG1270|consen 158 KFDAVVC----------------------SEVLEHVKDPQEFLNCLSALL----KPNGRLFITTI 196 (282)
T ss_pred ccceeee----------------------HHHHHHHhCHHHHHHHHHHHh----CCCCceEeeeh
Confidence 6999987 122222222345677777776 99999998874
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.2e-07 Score=86.43 Aligned_cols=122 Identities=26% Similarity=0.384 Sum_probs=85.9
Q ss_pred CeEeeccCCCchHHHHHHHHcCC----Cc----EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC------cccc
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKN----TG----LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL------PKVL 245 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~----~g----~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~------~~~~ 245 (496)
.+|+|+|||||+++..|+..+-. .+ .|+|+|+.+- ..+..|..+.+|.+.. ...+
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHHHHHHHh
Confidence 58999999999999999987632 33 3999998651 2356688888898764 2334
Q ss_pred CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHH
Q 010971 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325 (496)
Q Consensus 246 ~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~ 325 (496)
.....|+|+||..---+|+ .++.+. .|.+||.+|+.+...+|+|||.+|- -|+.-++-..+-
T Consensus 112 ggekAdlVvcDGAPDvTGl-------------Hd~DEy--~Q~qLllaAl~i~t~Vlk~Gg~FVa---KifRg~~tslLy 173 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGL-------------HDLDEY--VQAQLLLAALNIATCVLKPGGSFVA---KIFRGRDTSLLY 173 (294)
T ss_pred CCCCccEEEeCCCCCcccc-------------ccHHHH--HHHHHHHHHHHHHhheecCCCeeeh---hhhccCchHHHH
Confidence 5568999999954333342 333333 5778899999998889999999973 455666655544
Q ss_pred HHHHh
Q 010971 326 YALKK 330 (496)
Q Consensus 326 ~~L~~ 330 (496)
.-|+.
T Consensus 174 sql~~ 178 (294)
T KOG1099|consen 174 SQLRK 178 (294)
T ss_pred HHHHH
Confidence 33433
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.4e-06 Score=86.31 Aligned_cols=122 Identities=13% Similarity=0.122 Sum_probs=80.8
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCc---CE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTV---DR 252 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~f---D~ 252 (496)
.++.+|||+|||+|.+|..|++.+.....++++|+|+.+|..+.+++..... -++..+++|+....... ..+ +.
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~--~~~~~~~~ 139 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP--PEPAAGRR 139 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh--cccccCCe
Confidence 4678999999999999999998875446899999999999999999876432 24667888987632222 222 33
Q ss_pred --EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHH
Q 010971 253 --VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (496)
Q Consensus 253 --VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~ 327 (496)
++++.+ .|. ..+++ ...+|..+.+.| +|||.++...=+. .+.+++..+
T Consensus 140 ~~~~~gs~---~~~----------~~~~e-------~~~~L~~i~~~L----~pgG~~lig~d~~---~~~~~~~~a 189 (301)
T TIGR03438 140 LGFFPGST---IGN----------FTPEE-------AVAFLRRIRQLL----GPGGGLLIGVDLV---KDPAVLEAA 189 (301)
T ss_pred EEEEeccc---ccC----------CCHHH-------HHHHHHHHHHhc----CCCCEEEEeccCC---CCHHHHHHh
Confidence 332222 221 22222 245677777765 9999998754333 444555443
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.5e-06 Score=82.19 Aligned_cols=114 Identities=20% Similarity=0.199 Sum_probs=80.2
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEEE---
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLL--- 255 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLl--- 255 (496)
.+|||+|||.|.....|++-- =.+.++++|.++..++.++.-+++.|+.| |.+.+.|.... .. ..+.||+||=
T Consensus 69 ~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~-~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DF-LSGQFDLVLDKGT 145 (227)
T ss_pred cceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cc-cccceeEEeecCc
Confidence 399999999999887777642 24579999999999999999999999998 99999998764 32 2478998872
Q ss_pred -CCC-CCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcC
Q 010971 256 -DAP-CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE 319 (496)
Q Consensus 256 -DaP-CSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eE 319 (496)
||= -|+.+. .-+. ..-++.|...|+|||++|.++|-++..|
T Consensus 146 ~DAisLs~d~~-----~~r~------------------~~Y~d~v~~ll~~~gifvItSCN~T~dE 188 (227)
T KOG1271|consen 146 LDAISLSPDGP-----VGRL------------------VVYLDSVEKLLSPGGIFVITSCNFTKDE 188 (227)
T ss_pred eeeeecCCCCc-----ccce------------------eeehhhHhhccCCCcEEEEEecCccHHH
Confidence 221 011111 1110 1111223333599999999999998654
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.7e-06 Score=85.27 Aligned_cols=145 Identities=14% Similarity=0.195 Sum_probs=105.0
Q ss_pred CCCcccccccEEEeCCcchh----H--HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCC--------------------
Q 010971 150 GATPEYMAGFYMLQSASSFL----P--VMALAPQEKERVIDMAAAPGGKTTYIAALMKNT-------------------- 203 (496)
Q Consensus 150 ~~~~~~~~G~~~iQd~sS~l----~--v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~-------------------- 203 (496)
...+.++.||=.-+.++..- + +.+.+.+++..++|-.||+|...+..|.+..|-
T Consensus 157 tG~sLhkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~l 236 (381)
T COG0116 157 TGDSLHKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDL 236 (381)
T ss_pred CCcchhhccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHH
Confidence 44577888877777766532 1 223356788899999999999998877665321
Q ss_pred -----------c-------EEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEEECCCCCCCCc
Q 010971 204 -----------G-------LIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264 (496)
Q Consensus 204 -----------g-------~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~ 264 (496)
+ .++++|+++..++.++.|+.+.|+.. |.+...|++.+...+ ..+|+|++|||+- .-
T Consensus 237 w~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~--~~~gvvI~NPPYG-eR- 312 (381)
T COG0116 237 WDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL--EEYGVVISNPPYG-ER- 312 (381)
T ss_pred HHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC--CcCCEEEeCCCcc-hh-
Confidence 1 47899999999999999999999976 889999999987654 6899999999963 11
Q ss_pred ccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 265 i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
. .+-.....++..+...+-+.+ +.-++.|++|-.
T Consensus 313 --------l----g~~~~v~~LY~~fg~~lk~~~----~~ws~~v~tt~e 346 (381)
T COG0116 313 --------L----GSEALVAKLYREFGRTLKRLL----AGWSRYVFTTSE 346 (381)
T ss_pred --------c----CChhhHHHHHHHHHHHHHHHh----cCCceEEEEccH
Confidence 1 111233446677776666665 666677776543
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.2e-07 Score=88.76 Aligned_cols=142 Identities=14% Similarity=0.111 Sum_probs=91.8
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEecCCCCCccccCCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV--TNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~--~nv~v~~~D~~~~~~~~~~~ 248 (496)
+.++.|+.|++|||.|.|-|-.++..+. .+...|+.+|.++.-|..+.-|==.-++ .++.++.+|+..+-+.+.+.
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~--rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~ 204 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALE--RGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDE 204 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHH--cCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcc
Confidence 4455678899999999999998765444 3545899999999988766554322222 25789999998887777788
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC-CCCc---CCHHHH
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS-IMVT---ENEAVI 324 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS-i~~e---ENE~vV 324 (496)
+||.|+-|||-.+ ..- .+.. .++..+..++| +|||.|+--|-. -... .-..-|
T Consensus 205 sfDaIiHDPPRfS-------------~Ag-eLYs-----eefY~El~RiL----krgGrlFHYvG~Pg~ryrG~d~~~gV 261 (287)
T COG2521 205 SFDAIIHDPPRFS-------------LAG-ELYS-----EEFYRELYRIL----KRGGRLFHYVGNPGKRYRGLDLPKGV 261 (287)
T ss_pred ccceEeeCCCccc-------------hhh-hHhH-----HHHHHHHHHHc----CcCCcEEEEeCCCCcccccCChhHHH
Confidence 9999999999422 211 2221 23445555665 999998643322 1111 122334
Q ss_pred HHHHHhCCcEEee
Q 010971 325 DYALKKRDVKLVP 337 (496)
Q Consensus 325 ~~~L~~~~~~lv~ 337 (496)
..-|++-+|..|.
T Consensus 262 a~RLr~vGF~~v~ 274 (287)
T COG2521 262 AERLRRVGFEVVK 274 (287)
T ss_pred HHHHHhcCceeee
Confidence 4445555666554
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.1e-05 Score=77.49 Aligned_cols=140 Identities=24% Similarity=0.302 Sum_probs=100.4
Q ss_pred chhHHHhc------CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCC
Q 010971 167 SFLPVMAL------APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240 (496)
Q Consensus 167 S~l~v~~L------~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~ 240 (496)
|-|++..| .+.+|.+||=+||++|...+|++...+ .|.|+|+++++.-...|...+++ -.|+..+..|++.
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~--R~Ni~PIL~DA~~ 135 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK--RPNIIPILEDARK 135 (231)
T ss_pred hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh--CCCceeeecccCC
Confidence 56666655 357899999999999999999999998 79999999999999998888876 3588889999986
Q ss_pred Ccccc-CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHH-HHHHhhhhcCCCCcEEEEE--eCCCC
Q 010971 241 LPKVL-GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLIL-AAIDMVDANSKSGGYIVYS--TCSIM 316 (496)
Q Consensus 241 ~~~~~-~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~-~A~~~l~~~lkpGG~LVYS--TCSi~ 316 (496)
..+.. --+.+|+|..|.. ...|-+|+. +|-.+ |++||+++.+ .-|+.
T Consensus 136 P~~Y~~~Ve~VDviy~DVA-------------------------Qp~Qa~I~~~Na~~F----Lk~~G~~~i~iKArSId 186 (231)
T COG1889 136 PEKYRHLVEKVDVIYQDVA-------------------------QPNQAEILADNAEFF----LKKGGYVVIAIKARSID 186 (231)
T ss_pred cHHhhhhcccccEEEEecC-------------------------CchHHHHHHHHHHHh----cccCCeEEEEEEeeccc
Confidence 42211 0157999999974 123555544 45555 4999966544 66776
Q ss_pred Cc-CCHHHHHHHHH---hCCcEEeec
Q 010971 317 VT-ENEAVIDYALK---KRDVKLVPC 338 (496)
Q Consensus 317 ~e-ENE~vV~~~L~---~~~~~lv~~ 338 (496)
.. +.++|-+.-.. ..+|++.+.
T Consensus 187 vT~dp~~vf~~ev~kL~~~~f~i~e~ 212 (231)
T COG1889 187 VTADPEEVFKDEVEKLEEGGFEILEV 212 (231)
T ss_pred ccCCHHHHHHHHHHHHHhcCceeeEE
Confidence 65 45555554443 346666554
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.6e-06 Score=90.08 Aligned_cols=118 Identities=15% Similarity=0.218 Sum_probs=90.9
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
..+..+||+|||.|..++++|...++ ..++|+|++...+..+...+.+.|+.|+.++..|+..+...++.+++|.|.+.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 35789999999999999999999865 67999999999999999999999999999988888666555666789999987
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
=| ||.-|-+.....+ .|...|......| +|||.|.+.|=
T Consensus 425 FP---------DPWpKkrh~krRl-----~~~~fl~~~~~~L----k~gG~i~~~TD 463 (506)
T PRK01544 425 FP---------DPWIKNKQKKKRI-----FNKERLKILQDKL----KDNGNLVFASD 463 (506)
T ss_pred CC---------CCCCCCCCccccc-----cCHHHHHHHHHhc----CCCCEEEEEcC
Confidence 66 4443332222222 2344565556665 99999987664
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.8e-06 Score=80.65 Aligned_cols=108 Identities=16% Similarity=0.092 Sum_probs=72.6
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC---------------CeEEEEecCCCCC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV---------------TNTIVCNYDGNEL 241 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~---------------~nv~v~~~D~~~~ 241 (496)
.++.+|||++||.|--+.+||+. .-.|+|+|+|+..++.+.. ..|+ .+|.+.++|+..+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCC
Confidence 57889999999999999999874 2489999999999997633 2222 2577888998877
Q ss_pred ccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 242 ~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
+... .+.||.|+--+ |- - ...+.. ....+....++| +|||++++.|-+.
T Consensus 107 ~~~~-~~~fD~i~D~~-~~-----~-------~l~~~~-------R~~~~~~l~~lL----kpgG~~ll~~~~~ 155 (213)
T TIGR03840 107 TAAD-LGPVDAVYDRA-AL-----I-------ALPEEM-------RQRYAAHLLALL----PPGARQLLITLDY 155 (213)
T ss_pred Cccc-CCCcCEEEech-hh-----c-------cCCHHH-------HHHHHHHHHHHc----CCCCeEEEEEEEc
Confidence 5321 25689886411 10 0 011111 123455556665 9999988877665
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.9e-06 Score=91.42 Aligned_cols=117 Identities=12% Similarity=0.166 Sum_probs=81.4
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH--HHHc-----CCCeEEEEecCCCCCccccCCCC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTAN--LHRM-----GVTNTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~n--l~r~-----g~~nv~v~~~D~~~~~~~~~~~~ 249 (496)
....+|||+|+|.|+.+..+++. +....|+++|+|+..++.++++ +..+ .-.++.+++.|++.+.... .++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~-~~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL-AEK 373 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-CCC
Confidence 34679999999999998887763 3336999999999999999984 3322 2246889999998764322 368
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
||+|++|+|-.. .|.. ..+ ...+++..+.+.| +|||.++..++|..
T Consensus 374 fDvIi~D~~~~~------~~~~------~~L-----~t~ef~~~~~~~L----~pgG~lv~~~~~~~ 419 (521)
T PRK03612 374 FDVIIVDLPDPS------NPAL------GKL-----YSVEFYRLLKRRL----APDGLLVVQSTSPY 419 (521)
T ss_pred CCEEEEeCCCCC------Ccch------hcc-----chHHHHHHHHHhc----CCCeEEEEecCCcc
Confidence 999999987321 0110 000 1134566666665 99999998777643
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.8e-06 Score=87.05 Aligned_cols=86 Identities=17% Similarity=0.134 Sum_probs=69.0
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~ 248 (496)
..+..+++.+|++|||+|||+|..|..|+... ..|+|+|+++..++.+++++.. .++.++++|+..++.. .-
T Consensus 33 ~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~--~~ 104 (272)
T PRK00274 33 KIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLS--EL 104 (272)
T ss_pred HHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHH--Hc
Confidence 34456678899999999999999999999874 3899999999999999887743 6799999999887521 11
Q ss_pred CcCEEEECCCCCCC
Q 010971 249 TVDRVLLDAPCSGT 262 (496)
Q Consensus 249 ~fD~VLlDaPCSg~ 262 (496)
.+|.|+.++|+.-+
T Consensus 105 ~~~~vv~NlPY~is 118 (272)
T PRK00274 105 QPLKVVANLPYNIT 118 (272)
T ss_pred CcceEEEeCCccch
Confidence 15999999997543
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.7e-05 Score=81.79 Aligned_cols=70 Identities=14% Similarity=0.062 Sum_probs=57.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEecCCCCCccccCCCCcCE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-----VTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g-----~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
+|.+|||+|||+|..+..++.. ...|+++|+|+..++.+++++...+ ..++.+...|...+ .+.||.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-----~~~fD~ 215 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-----SGKYDT 215 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-----CCCcCE
Confidence 5789999999999999999874 2589999999999999999998763 23567777776543 268999
Q ss_pred EEE
Q 010971 253 VLL 255 (496)
Q Consensus 253 VLl 255 (496)
|++
T Consensus 216 Vv~ 218 (315)
T PLN02585 216 VTC 218 (315)
T ss_pred EEE
Confidence 986
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.6e-06 Score=82.53 Aligned_cols=133 Identities=26% Similarity=0.274 Sum_probs=100.7
Q ss_pred chhHHHhc------CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCC
Q 010971 167 SFLPVMAL------APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240 (496)
Q Consensus 167 S~l~v~~L------~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~ 240 (496)
|-|++-.| .++||.+||-|+||+|..-.|+++..++.|.|+|+|.+...=..|...+++- +||+.+..|++.
T Consensus 139 SKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArh 216 (317)
T KOG1596|consen 139 SKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARH 216 (317)
T ss_pred HHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCCC
Confidence 44555444 3789999999999999999999999999999999999987777776666543 688889999987
Q ss_pred Cccc-cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHH-HHHHHHHHHhhhhcCCCCcEEEEE---eCCC
Q 010971 241 LPKV-LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQ-KQLILAAIDMVDANSKSGGYIVYS---TCSI 315 (496)
Q Consensus 241 ~~~~-~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ-~~LL~~A~~~l~~~lkpGG~LVYS---TCSi 315 (496)
..+. +--.-+|+||.|.|- | .| +-+..+|..+| ++||.+|.| .|+=
T Consensus 217 P~KYRmlVgmVDvIFaDvaq---------p----------------dq~RivaLNA~~FL----k~gGhfvisikancid 267 (317)
T KOG1596|consen 217 PAKYRMLVGMVDVIFADVAQ---------P----------------DQARIVALNAQYFL----KNGGHFVISIKANCID 267 (317)
T ss_pred chheeeeeeeEEEEeccCCC---------c----------------hhhhhhhhhhhhhh----ccCCeEEEEEeccccc
Confidence 5332 111468999999871 1 12 23455676776 999999876 7888
Q ss_pred CCcCCHHHHHHHHHh
Q 010971 316 MVTENEAVIDYALKK 330 (496)
Q Consensus 316 ~~eENE~vV~~~L~~ 330 (496)
....+|.|-+.-.++
T Consensus 268 stv~ae~vFa~Ev~k 282 (317)
T KOG1596|consen 268 STVFAEAVFAAEVKK 282 (317)
T ss_pred ccccHHHHHHHHHHH
Confidence 888999987755443
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.4e-06 Score=80.09 Aligned_cols=120 Identities=17% Similarity=0.177 Sum_probs=95.5
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCC-ccc
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL-PKV 244 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~-~~~ 244 (496)
.++..+++..-...++||+|.-+|..++.+|-.++..|.|+|+|+++.-.+....-.+..|+.. |.++.+++.+- ++.
T Consensus 62 g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l 141 (237)
T KOG1663|consen 62 GQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDEL 141 (237)
T ss_pred HHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHH
Confidence 4566666666667899999999999999999999999999999999999999999999999965 88888887542 222
Q ss_pred c---CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 245 L---GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 245 ~---~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
. ..+.||.+|+|+= -.++ ...+.++++++ |+||.|++-.-++
T Consensus 142 ~~~~~~~tfDfaFvDad---------------------K~nY----~~y~e~~l~Ll----r~GGvi~~DNvl~ 186 (237)
T KOG1663|consen 142 LADGESGTFDFAFVDAD---------------------KDNY----SNYYERLLRLL----RVGGVIVVDNVLW 186 (237)
T ss_pred HhcCCCCceeEEEEccc---------------------hHHH----HHHHHHHHhhc----ccccEEEEecccc
Confidence 2 3478999999973 0111 24578888987 9999999976554
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.1e-05 Score=82.93 Aligned_cols=110 Identities=16% Similarity=0.219 Sum_probs=79.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC--C--CeEEEEecCCCCCccccCCCCcCEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG--V--TNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g--~--~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
...+||++|+|.|+....++.. ++...|+.+|+++..++.+++.+...+ + .++.++..|+..+-.....+.||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4679999999999998888765 444689999999999999999886643 3 3589999999876432223689999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVY 310 (496)
++|.+-. .| | ... -...+.+..+.+.| +|||.+|.
T Consensus 170 i~D~~dp-~~-----~-------~~~-----L~t~ef~~~~~~~L----~pgGvlv~ 204 (308)
T PLN02366 170 IVDSSDP-VG-----P-------AQE-----LFEKPFFESVARAL----RPGGVVCT 204 (308)
T ss_pred EEcCCCC-CC-----c-------hhh-----hhHHHHHHHHHHhc----CCCcEEEE
Confidence 9998621 11 0 001 11245566666765 99999975
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.4e-06 Score=79.32 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=57.3
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
..++.+|||+|||+|..+..|+..+++ +.|+|+|+|+..++.+++++ .++.+..+|+.. + +..+.||.|++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~-~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~--~~~~sfD~V~~ 111 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPF-KHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-P--FKDNFFDLVLT 111 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCC-CeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-C--CCCCCEEEEEE
Confidence 456789999999999999999887643 78999999999999998764 245566778765 3 34478999996
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.4e-05 Score=90.73 Aligned_cols=112 Identities=15% Similarity=0.183 Sum_probs=82.7
Q ss_pred CCCCcccccccEEEeCCcchh---HHHhc---CC-CCCCeEeeccCCCchHHHHHHHHcC--------------------
Q 010971 149 IGATPEYMAGFYMLQSASSFL---PVMAL---AP-QEKERVIDMAAAPGGKTTYIAALMK-------------------- 201 (496)
Q Consensus 149 i~~~~~~~~G~~~iQd~sS~l---~v~~L---~~-~~g~~VLDmcAgpGgKT~~lA~l~~-------------------- 201 (496)
....+.++.|+=..+.++.+- ++.+| .. .++..++|-+||+|+..+..|.+..
T Consensus 154 ~sg~~L~rRgyr~~~~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~ 233 (702)
T PRK11783 154 LSGESLHQRGYRQATGEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHD 233 (702)
T ss_pred CCCCchhhccCccCCCCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCC
Confidence 344567777865556665432 22122 22 5689999999999999887665421
Q ss_pred ---------------------CCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEEECCCC
Q 010971 202 ---------------------NTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 202 ---------------------~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLlDaPC 259 (496)
....|+|+|+++..+..++.|+..+|+.+ +.+.+.|+..++.....+.||.|++|||+
T Consensus 234 ~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPY 313 (702)
T PRK11783 234 EALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPY 313 (702)
T ss_pred HHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCC
Confidence 11369999999999999999999999976 88999999887543323579999999996
Q ss_pred C
Q 010971 260 S 260 (496)
Q Consensus 260 S 260 (496)
-
T Consensus 314 g 314 (702)
T PRK11783 314 G 314 (702)
T ss_pred c
Confidence 3
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.3e-06 Score=81.81 Aligned_cols=102 Identities=16% Similarity=0.226 Sum_probs=78.5
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
.+.+-.+|.|+|||||..|-.|++..+. ..|+++|.|+.+++.+.+++ .++.+..+|.+.+. +...+|+|+
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~RwP~-A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~---p~~~~dllf 97 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRWPD-AVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWK---PEQPTDLLF 97 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHHhCCC-CeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcC---CCCccchhh
Confidence 4556789999999999999999999975 79999999999999885544 56788889988774 236799998
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.+|- +.|-+++ -++|.+.+..| .|||.|..-
T Consensus 98 aNAv--------------lqWlpdH--------~~ll~rL~~~L----~Pgg~LAVQ 128 (257)
T COG4106 98 ANAV--------------LQWLPDH--------PELLPRLVSQL----APGGVLAVQ 128 (257)
T ss_pred hhhh--------------hhhcccc--------HHHHHHHHHhh----CCCceEEEE
Confidence 8763 3344443 24566666665 999999763
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.9e-06 Score=75.99 Aligned_cols=104 Identities=17% Similarity=0.267 Sum_probs=69.7
Q ss_pred HHhcC-CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCC
Q 010971 171 VMALA-PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 171 v~~L~-~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~ 249 (496)
..++. ..++.+|||+|||.|..+..++... ..++++|+++..+.. .++...+.+....+. ..+.
T Consensus 14 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~--~~~~ 78 (161)
T PF13489_consen 14 ERLLPRLKPGKRVLDIGCGTGSFLRALAKRG---FEVTGVDISPQMIEK----------RNVVFDNFDAQDPPF--PDGS 78 (161)
T ss_dssp HHHHTCTTTTSEEEEESSTTSHHHHHHHHTT---SEEEEEESSHHHHHH----------TTSEEEEEECHTHHC--HSSS
T ss_pred HHHhcccCCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHhh----------hhhhhhhhhhhhhhc--cccc
Confidence 33443 4678999999999999998886652 389999999999887 233333333333221 2378
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
||.|++- .++..-++ -..+|....++| +|||+++.++-..
T Consensus 79 fD~i~~~------~~l~~~~d----------------~~~~l~~l~~~L----kpgG~l~~~~~~~ 118 (161)
T PF13489_consen 79 FDLIICN------DVLEHLPD----------------PEEFLKELSRLL----KPGGYLVISDPNR 118 (161)
T ss_dssp EEEEEEE------SSGGGSSH----------------HHHHHHHHHHCE----EEEEEEEEEEEBT
T ss_pred hhhHhhH------HHHhhccc----------------HHHHHHHHHHhc----CCCCEEEEEEcCC
Confidence 9999972 22222221 134567777765 9999999987654
|
... |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.4e-05 Score=75.93 Aligned_cols=132 Identities=21% Similarity=0.244 Sum_probs=84.8
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec-CCCCC------ccccCCCC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY-DGNEL------PKVLGLNT 249 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~-D~~~~------~~~~~~~~ 249 (496)
.|+++|||+|||||.++...-+..++.|.|+++|+-. -..+..+.++.+ |.++. -+.++...
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh-----------~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH-----------IEPPEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee-----------ccCCCCcccccccccCCHHHHHHHHHhCCCCc
Confidence 5799999999999999999999998889999999742 122333334433 65542 12235578
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCc-CCHHHHHHHH
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT-ENEAVIDYAL 328 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~e-ENE~vV~~~L 328 (496)
+|+||.|.---.+|+- ..|-..+..+=..+|.-|+.++ .|+|.+| |-+..- |.......+.
T Consensus 137 VdvVlSDMapnaTGvr-----------~~Dh~~~i~LC~s~l~~al~~~----~p~g~fv---cK~w~g~e~~~l~r~l~ 198 (232)
T KOG4589|consen 137 VDVVLSDMAPNATGVR-----------IRDHYRSIELCDSALLFALTLL----IPNGSFV---CKLWDGSEEALLQRRLQ 198 (232)
T ss_pred ccEEEeccCCCCcCcc-----------hhhHHHHHHHHHHHHHHhhhhc----CCCcEEE---EEEecCCchHHHHHHHH
Confidence 9999999665666643 2233334444455677777776 8999987 444433 3333444444
Q ss_pred HhC-CcEEee
Q 010971 329 KKR-DVKLVP 337 (496)
Q Consensus 329 ~~~-~~~lv~ 337 (496)
+.+ .|+.+.
T Consensus 199 ~~f~~Vk~vK 208 (232)
T KOG4589|consen 199 AVFTNVKKVK 208 (232)
T ss_pred HHhhhcEeeC
Confidence 443 455443
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.4e-05 Score=77.50 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=58.9
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
.++.+|||+|||+|..+..+++.. ..|+++|+++..++.++.++...+. .++.+...|... . .+.||+|++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~--~~~fD~v~~ 133 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---L--LGRFDTVVC 133 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---c--cCCcCEEEE
Confidence 467899999999999999888752 4699999999999999999998887 468888888322 1 267999987
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.5e-05 Score=76.55 Aligned_cols=85 Identities=18% Similarity=0.105 Sum_probs=60.1
Q ss_pred CCcchhHHHh--cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-------------
Q 010971 164 SASSFLPVMA--LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV------------- 228 (496)
Q Consensus 164 d~sS~l~v~~--L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~------------- 228 (496)
.+..++.... +.+.++.+|||++||.|--+.+||+. .-.|+|+|+++..++.+.. +.|+
T Consensus 21 ~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~ 94 (218)
T PRK13255 21 EVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHY 94 (218)
T ss_pred CCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCcccccccccccc
Confidence 4444554432 34456889999999999999999974 3589999999999997642 2222
Q ss_pred --CeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 229 --TNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 229 --~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
.+|.+.++|+..++... ...||.|+-
T Consensus 95 ~~~~v~~~~~D~~~l~~~~-~~~fd~v~D 122 (218)
T PRK13255 95 QAGEITIYCGDFFALTAAD-LADVDAVYD 122 (218)
T ss_pred ccCceEEEECcccCCCccc-CCCeeEEEe
Confidence 35778889988774321 257888863
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.5e-06 Score=79.70 Aligned_cols=66 Identities=18% Similarity=0.123 Sum_probs=53.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
++.+|||+|||+|..+.+++... .+.|+++|+|+.+++.++... ..+++|+..+| +.+++||.|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~lp--~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--------DKVVGSFEALP--FRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--------ceEEechhhCC--CCCCCEEEEEe
Confidence 47899999999999999998875 369999999999999876531 23567888776 44589999987
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=8.5e-06 Score=79.77 Aligned_cols=78 Identities=19% Similarity=0.139 Sum_probs=57.4
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCC
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKN---TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~---~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~ 249 (496)
.+...++.+|||+|||+|..+..|+..+.. ...|+|+|+++..++.++.+....++ .+...|+..++. ..+.
T Consensus 55 ~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~~~~~~l~~--~~~~ 129 (232)
T PRK06202 55 ALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV---TFRQAVSDELVA--EGER 129 (232)
T ss_pred hcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC---eEEEEecccccc--cCCC
Confidence 344456789999999999999988876532 24899999999999999887655443 344444444442 2478
Q ss_pred cCEEEE
Q 010971 250 VDRVLL 255 (496)
Q Consensus 250 fD~VLl 255 (496)
||.|++
T Consensus 130 fD~V~~ 135 (232)
T PRK06202 130 FDVVTS 135 (232)
T ss_pred ccEEEE
Confidence 999997
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.2e-06 Score=75.87 Aligned_cols=84 Identities=19% Similarity=0.218 Sum_probs=66.9
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
-+|..++|+|||.|..+ ++..|...-.|+++|+++..|+...+|++.+.+. +.+++.|..++.. ..+.||.++.|
T Consensus 47 iEgkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcdildle~--~~g~fDtaviN 121 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCDILDLEL--KGGIFDTAVIN 121 (185)
T ss_pred ccCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh-hheeeeeccchhc--cCCeEeeEEec
Confidence 47899999999999987 4455555679999999999999999999999885 4667777766542 23889999999
Q ss_pred CCCCCCCcccCC
Q 010971 257 APCSGTGVISKD 268 (496)
Q Consensus 257 aPCSg~G~i~r~ 268 (496)
|| .|+-.++
T Consensus 122 pp---FGTk~~~ 130 (185)
T KOG3420|consen 122 PP---FGTKKKG 130 (185)
T ss_pred CC---CCccccc
Confidence 99 4554443
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.1e-06 Score=80.94 Aligned_cols=83 Identities=17% Similarity=0.079 Sum_probs=67.5
Q ss_pred hhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCC
Q 010971 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 168 ~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~ 247 (496)
...+..+++.++++|||+|||+|..|..|++.. ..|+++|+++..+..++.++.. ..++.++++|+..++.
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~---- 89 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDL---- 89 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCCh----
Confidence 344556677889999999999999999999875 3599999999999999887743 4678999999987763
Q ss_pred CCcC---EEEECCCC
Q 010971 248 NTVD---RVLLDAPC 259 (496)
Q Consensus 248 ~~fD---~VLlDaPC 259 (496)
..|| .|+.+.|.
T Consensus 90 ~~~d~~~~vvsNlPy 104 (253)
T TIGR00755 90 PDFPKQLKVVSNLPY 104 (253)
T ss_pred hHcCCcceEEEcCCh
Confidence 2466 99998883
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.3e-05 Score=84.85 Aligned_cols=87 Identities=17% Similarity=0.171 Sum_probs=62.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-------CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc---ccCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-------TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---VLGL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-------~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~---~~~~ 247 (496)
.+.+|||.|||+|+..+.++..+.. .-.++++|+++..+..+..|+..++.-.+.+.+.|...... ....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 3569999999999999988876632 13689999999999999999988873234444454332110 0012
Q ss_pred CCcCEEEECCCCCCCCc
Q 010971 248 NTVDRVLLDAPCSGTGV 264 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~ 264 (496)
+.||+|+.+||......
T Consensus 111 ~~fD~IIgNPPy~~~k~ 127 (524)
T TIGR02987 111 DLFDIVITNPPYGRLKP 127 (524)
T ss_pred CcccEEEeCCCccccCc
Confidence 58999999999877643
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.3e-05 Score=82.14 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=75.7
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc---CC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---GL 247 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~---~~ 247 (496)
+.+|.+++|..++|+.+|-||-|..|+..+++ |.|+|+|.++..+..++++++.++ .++.+++.+...+...+ ..
T Consensus 13 l~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~~ 90 (305)
T TIGR00006 13 VEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELLV 90 (305)
T ss_pred HHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcCC
Confidence 45677889999999999999999999998875 999999999999999999998763 46889999888775544 33
Q ss_pred CCcCEEEECCCCCCC
Q 010971 248 NTVDRVLLDAPCSGT 262 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~ 262 (496)
..||.||+|-=+|..
T Consensus 91 ~~vDgIl~DLGvSS~ 105 (305)
T TIGR00006 91 TKIDGILVDLGVSSP 105 (305)
T ss_pred CcccEEEEeccCCHh
Confidence 579999999877753
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=8.2e-06 Score=77.52 Aligned_cols=100 Identities=21% Similarity=0.205 Sum_probs=81.0
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaP 258 (496)
.+.+.|+|||+|-.+...|.. .-+|+|++.++.+...+.+|++-.|..|+.++++|++++. + ...|+|+|..
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~--f--e~ADvvicEm- 104 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD--F--ENADVVICEM- 104 (252)
T ss_pred hhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc--c--cccceeHHHH-
Confidence 378999999999998877665 3589999999999999999999999999999999999875 3 5789998732
Q ss_pred CCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEE
Q 010971 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309 (496)
Q Consensus 259 CSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LV 309 (496)
-|..-+-..|...+.+++++| +..+.|+
T Consensus 105 -------------------lDTaLi~E~qVpV~n~vleFL----r~d~tii 132 (252)
T COG4076 105 -------------------LDTALIEEKQVPVINAVLEFL----RYDPTII 132 (252)
T ss_pred -------------------hhHHhhcccccHHHHHHHHHh----hcCCccc
Confidence 122334456777888888886 7777664
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.7e-05 Score=74.28 Aligned_cols=85 Identities=18% Similarity=0.074 Sum_probs=70.6
Q ss_pred HhcC--CCCCCeEeeccCCCchHHHHHHHHcCCCcEE-EEEeCCHHHHHHHHHHHHHcC----------CCeEEEEecCC
Q 010971 172 MALA--PQEKERVIDMAAAPGGKTTYIAALMKNTGLI-YANEMKASRLKSLTANLHRMG----------VTNTIVCNYDG 238 (496)
Q Consensus 172 ~~L~--~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V-~A~D~s~~rl~~l~~nl~r~g----------~~nv~v~~~D~ 238 (496)
.+|. ++||...||+|+|+|-.|+.++.+++..|.+ +++|.-++-++..+.|+...- ..++.++.+|+
T Consensus 74 e~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDg 153 (237)
T KOG1661|consen 74 EYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDG 153 (237)
T ss_pred HHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCc
Confidence 4455 7899999999999999999999888877765 999999999999999998754 23577889999
Q ss_pred CCCccccCCCCcCEEEECCC
Q 010971 239 NELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 239 ~~~~~~~~~~~fD~VLlDaP 258 (496)
+..-... ..||+|.|-|-
T Consensus 154 r~g~~e~--a~YDaIhvGAa 171 (237)
T KOG1661|consen 154 RKGYAEQ--APYDAIHVGAA 171 (237)
T ss_pred cccCCcc--CCcceEEEccC
Confidence 9874433 78999999654
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.4e-05 Score=74.73 Aligned_cols=86 Identities=20% Similarity=0.159 Sum_probs=64.6
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccC
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~ 246 (496)
|..++..+... +.+|+|+|+|.|-=++.+|-+.+ ...++.+|.+..|+.-++.-+..+|++|+.+++..+.. + ..
T Consensus 38 SL~~~~~~~~~-~~~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~--~~ 112 (184)
T PF02527_consen 38 SLALLPFLPDF-GKKVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-P--EY 112 (184)
T ss_dssp HHGGGGCS-CC-CSEEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-T--TT
T ss_pred HHHhhhhhccC-CceEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-c--cc
Confidence 44444444332 22899999999999999888775 47899999999999999999999999999999988776 1 12
Q ss_pred CCCcCEEEECC
Q 010971 247 LNTVDRVLLDA 257 (496)
Q Consensus 247 ~~~fD~VLlDa 257 (496)
...||.|+.=|
T Consensus 113 ~~~fd~v~aRA 123 (184)
T PF02527_consen 113 RESFDVVTARA 123 (184)
T ss_dssp TT-EEEEEEES
T ss_pred CCCccEEEeeh
Confidence 37899998743
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00013 Score=73.83 Aligned_cols=129 Identities=14% Similarity=0.163 Sum_probs=91.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeE-EEEecCCCCCccccC-CCCcCEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNT-IVCNYDGNELPKVLG-LNTVDRVL 254 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv-~v~~~D~~~~~~~~~-~~~fD~VL 254 (496)
..-+|||+|||+|---+-+....+. .-.|.-+|.++.-++..++.++..|+.++ .+.++|+.+...... ....++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 3468999999999987766655543 35899999999999999999999999996 999999876533221 13568888
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhC
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~ 331 (496)
+ +|++.=-|+- + +-++.|.....++ .|||+|||+.=-+||. -+.|+.+|..|
T Consensus 215 V------sGL~ElF~Dn-------~------lv~~sl~gl~~al----~pgG~lIyTgQPwHPQ--le~IAr~LtsH 266 (311)
T PF12147_consen 215 V------SGLYELFPDN-------D------LVRRSLAGLARAL----EPGGYLIYTGQPWHPQ--LEMIARVLTSH 266 (311)
T ss_pred E------ecchhhCCcH-------H------HHHHHHHHHHHHh----CCCcEEEEcCCCCCcc--hHHHHHHHhcc
Confidence 7 4544222211 1 1122244444444 9999999988788873 45788888775
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=3e-05 Score=76.44 Aligned_cols=108 Identities=14% Similarity=0.138 Sum_probs=76.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-----C-----------------------
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-----T----------------------- 229 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-----~----------------------- 229 (496)
.+..+||+||-.|..|++||..++. ..|+++|+++.+++.++.++...-- .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 4568999999999999999999865 6799999999999999999875311 1
Q ss_pred --------------eEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHH
Q 010971 230 --------------NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAI 295 (496)
Q Consensus 230 --------------nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~ 295 (496)
|+++...|+. .+....||+||| ++---.|.++|..+.+ ++++.++.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl----~~~~~~fDiIlc---------LSiTkWIHLNwgD~GL-------~~ff~kis 196 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFL----DMIQPEFDIILC---------LSITKWIHLNWGDDGL-------RRFFRKIS 196 (288)
T ss_pred ccccCCcchhcccccEEEecchhh----hhccccccEEEE---------EEeeeeEecccccHHH-------HHHHHHHH
Confidence 1111111121 123368999997 1222234456766666 45677888
Q ss_pred HhhhhcCCCCcEEEE
Q 010971 296 DMVDANSKSGGYIVY 310 (496)
Q Consensus 296 ~~l~~~lkpGG~LVY 310 (496)
.+| .|||+||.
T Consensus 197 ~ll----~pgGiLvv 207 (288)
T KOG2899|consen 197 SLL----HPGGILVV 207 (288)
T ss_pred Hhh----CcCcEEEE
Confidence 876 99999986
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=97.93 E-value=6.4e-05 Score=72.05 Aligned_cols=71 Identities=21% Similarity=0.194 Sum_probs=54.4
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
+.||.+|||+|||.|..-.+|.+.. ....+++|++++.+..+.+ .| +.|+++|...--..+++++||.|++
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~----rG---v~Viq~Dld~gL~~f~d~sFD~VIl 81 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVA----RG---VSVIQGDLDEGLADFPDQSFDYVIL 81 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHH----cC---CCEEECCHHHhHhhCCCCCccEEeh
Confidence 4689999999999999888777753 4689999999988765543 24 4477888765444456789999987
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.4e-05 Score=75.47 Aligned_cols=117 Identities=21% Similarity=0.234 Sum_probs=78.6
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcC
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD 251 (496)
.+.+-.|.+|||+|||.|..+..|+.. +...|+++|.+..-+.....--+-+|... +..+..-...+|. . +.||
T Consensus 110 ~l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~--~~FD 184 (315)
T PF08003_consen 110 HLPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L--GAFD 184 (315)
T ss_pred hhCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c--CCcC
Confidence 344567999999999999999887765 44689999999887766555445556554 3333233345554 3 7899
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCC
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN 320 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eEN 320 (496)
.||+ +||+-+. +++-+ .|....+.| +|||.||.=|--+.-+++
T Consensus 185 tVF~------MGVLYHr------r~Pl~----------~L~~Lk~~L----~~gGeLvLETlvi~g~~~ 227 (315)
T PF08003_consen 185 TVFS------MGVLYHR------RSPLD----------HLKQLKDSL----RPGGELVLETLVIDGDEN 227 (315)
T ss_pred EEEE------eeehhcc------CCHHH----------HHHHHHHhh----CCCCEEEEEEeeecCCCc
Confidence 9997 7877542 22221 244444444 999999988877665554
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=8e-06 Score=88.86 Aligned_cols=110 Identities=25% Similarity=0.257 Sum_probs=71.8
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCC------CccccCCCC
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE------LPKVLGLNT 249 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~------~~~~~~~~~ 249 (496)
++++..|||+||||||+....++.|+-.+.|+++|+-+-+ -+.|+.....|.+. +-..+....
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~~c~t~v~dIttd~cr~~l~k~l~t~~ 110 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIPNCDTLVEDITTDECRSKLRKILKTWK 110 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCCccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 4678999999999999999999999988899999997732 23444444444432 112223346
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.|+||-|.. |.+-..|..+. ..|-.|...|+++....|..||.+|.-
T Consensus 111 advVLhDga----------pnVg~~w~~DA-----~~q~~L~l~al~LA~~~l~~~g~fvtk 157 (780)
T KOG1098|consen 111 ADVVLHDGA----------PNVGGNWVQDA-----FQQACLTLRALKLATEFLAKGGTFVTK 157 (780)
T ss_pred CcEEeecCC----------CccchhHHHHH-----HHhhHHHHHHHHHHHHHHHhcCccccc
Confidence 799999953 22223343332 344455555555555555999997653
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00015 Score=75.56 Aligned_cols=78 Identities=9% Similarity=0.002 Sum_probs=61.4
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEecCCCCCccccCCCCcCEEE
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----VTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g----~~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
..+||-+|+|.|+.+..+.... ....|+++|+++..++.+++.+...+ -.++.++..|++.+-... .+.||+|+
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~-~~~yDvIi 181 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR-DEKFDVII 181 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC-CCCccEEE
Confidence 4689999999999887776642 33589999999999999999876432 246899999998874332 36899999
Q ss_pred ECCC
Q 010971 255 LDAP 258 (496)
Q Consensus 255 lDaP 258 (496)
+|++
T Consensus 182 ~D~~ 185 (336)
T PLN02823 182 GDLA 185 (336)
T ss_pred ecCC
Confidence 9974
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.6e-05 Score=81.36 Aligned_cols=105 Identities=26% Similarity=0.318 Sum_probs=76.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe--EEEEecCCCCCccccCCCCcCEEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN--TIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n--v~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
.+-+|||.-||+|--++-.+.-..+...|++||+|+..++.++.|++.+|+.. +.+.+.|+..+-. .....||.|=+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~-~~~~~fD~IDl 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY-SRQERFDVIDL 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC-HSTT-EEEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh-hccccCCEEEe
Confidence 35689999999999999988887666799999999999999999999999986 8888899876532 13478999999
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
||= |+- --.|..|++.+ +.||.| |.|||
T Consensus 128 DPf--GSp------------------------~pfldsA~~~v----~~gGll-~vTaT 155 (377)
T PF02005_consen 128 DPF--GSP------------------------APFLDSALQAV----KDGGLL-CVTAT 155 (377)
T ss_dssp --S--S--------------------------HHHHHHHHHHE----EEEEEE-EEEE-
T ss_pred CCC--CCc------------------------cHhHHHHHHHh----hcCCEE-EEecc
Confidence 973 221 12589999997 777755 66776
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00011 Score=80.10 Aligned_cols=167 Identities=23% Similarity=0.240 Sum_probs=106.3
Q ss_pred cEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEE
Q 010971 159 FYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKN---TGLIYANEMKASRLKSLTANLHRMGVT-NTIVC 234 (496)
Q Consensus 159 ~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~---~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~ 234 (496)
+|+.+ .-+.+.+.+|.|.+..+|+|-|||+||.-+..+..++. ...+++.|++......++-|+--.|+. ++.+.
T Consensus 168 fyTP~-~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~ 246 (489)
T COG0286 168 FYTPR-EVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIR 246 (489)
T ss_pred cCChH-HHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccc
Confidence 34444 44667788898899999999999999999988888753 378999999999999999999988887 45666
Q ss_pred ecCCCCCcccc---CCCCcCEEEECCCCCCCCcccCC-chhh-ccCCHHHHHHHHHHH-HHHHHHHHHhhhhcCCCCcE-
Q 010971 235 NYDGNELPKVL---GLNTVDRVLLDAPCSGTGVISKD-ESVK-TSKSLEDIQKCSYLQ-KQLILAAIDMVDANSKSGGY- 307 (496)
Q Consensus 235 ~~D~~~~~~~~---~~~~fD~VLlDaPCSg~G~i~r~-p~~k-~~~s~~~i~~l~~lQ-~~LL~~A~~~l~~~lkpGG~- 307 (496)
++|...-|... ....||.|+.+||.|+.|...-. .... +.............. ...+.+.+..+ +|||+
T Consensus 247 ~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l----~~~g~a 322 (489)
T COG0286 247 HGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKL----KPGGRA 322 (489)
T ss_pred ccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhc----CCCceE
Confidence 66654444331 23679999999999976544321 0000 000000000000001 33466667765 77653
Q ss_pred -EEEEeCCCCCcCCHHHHHHHHHh
Q 010971 308 -IVYSTCSIMVTENEAVIDYALKK 330 (496)
Q Consensus 308 -LVYSTCSi~~eENE~vV~~~L~~ 330 (496)
||...-.++..-++..|...|-.
T Consensus 323 aivl~~gvlfr~~~e~~IR~~l~~ 346 (489)
T COG0286 323 AIVLPDGVLFRGGAEKDIRKDLLE 346 (489)
T ss_pred EEEecCCcCcCCCchHHHHHHHHh
Confidence 23333334444468777755443
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0001 Score=72.04 Aligned_cols=75 Identities=17% Similarity=0.154 Sum_probs=64.6
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCC-cCEEEECC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT-VDRVLLDA 257 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~-fD~VLlDa 257 (496)
+.+|+|+|||+|-=++.+|-.. +...|+-+|....|+.-|+.-.+.+|++|+.++++.+..+.... . ||.|.+=|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~---~~~D~vtsRA 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEK---KQYDVVTSRA 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccccc---ccCcEEEeeh
Confidence 6899999999999999998544 45679999999999999999999999999999999988876432 3 99998743
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00013 Score=73.18 Aligned_cols=90 Identities=17% Similarity=0.090 Sum_probs=74.3
Q ss_pred hhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCC
Q 010971 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 168 ~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~ 247 (496)
.-.+.+.++.+++.||++|+|.|+.|..|++.. ..|+|+|+|+..+..|.+.+. ...|+.++++|+..++-.. .
T Consensus 20 ~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~-l 93 (259)
T COG0030 20 DKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPS-L 93 (259)
T ss_pred HHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchh-h
Confidence 455778888999999999999999999999874 579999999999999988876 4568999999998875210 0
Q ss_pred CCcCEEEECCCCCCCC
Q 010971 248 NTVDRVLLDAPCSGTG 263 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G 263 (496)
..+++|+.+-|+.-+.
T Consensus 94 ~~~~~vVaNlPY~Iss 109 (259)
T COG0030 94 AQPYKVVANLPYNISS 109 (259)
T ss_pred cCCCEEEEcCCCcccH
Confidence 1689999999987553
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=1.6e-05 Score=77.19 Aligned_cols=86 Identities=21% Similarity=0.244 Sum_probs=70.1
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCcccc--CCCCcCEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVL--GLNTVDRVL 254 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~--~~~~fD~VL 254 (496)
.-+.|+|.+||-||-|++.|... ..|+++|+++-++..+++|++-+|+.+ |.++++|..++...+ ....+|.|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf 170 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVF 170 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeee
Confidence 45789999999999999877653 579999999999999999999999986 899999987653332 112467999
Q ss_pred ECCCCCCCCccc
Q 010971 255 LDAPCSGTGVIS 266 (496)
Q Consensus 255 lDaPCSg~G~i~ 266 (496)
+-||=+|.|..+
T Consensus 171 ~sppwggp~y~~ 182 (263)
T KOG2730|consen 171 LSPPWGGPSYLR 182 (263)
T ss_pred cCCCCCCcchhh
Confidence 999999988554
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=97.73 E-value=9.7e-05 Score=76.79 Aligned_cols=112 Identities=14% Similarity=0.144 Sum_probs=68.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC-------C---CeEEEEecCCCCC--cccc
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-------V---TNTIVCNYDGNEL--PKVL 245 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g-------~---~nv~v~~~D~~~~--~~~~ 245 (496)
++.+|||||||-||=..=.... +.+.++++|++..-++.++++...+. . -...++..|...- ...+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 7899999999999965533332 45799999999999999999884332 1 1245667776532 1222
Q ss_pred CC--CCcCEEEECCCCCCCCcccCCchhhccC-CHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 246 GL--NTVDRVLLDAPCSGTGVISKDESVKTSK-SLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 246 ~~--~~fD~VLlDaPCSg~G~i~r~p~~k~~~-s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.. ..||+|=|=- .+.+.. +++. -+.+|.++...| +|||+++-+|.+
T Consensus 140 ~~~~~~FDvVScQF------------alHY~Fese~~-------ar~~l~Nvs~~L----k~GG~FIgT~~d 188 (331)
T PF03291_consen 140 PPRSRKFDVVSCQF------------ALHYAFESEEK-------ARQFLKNVSSLL----KPGGYFIGTTPD 188 (331)
T ss_dssp SSTTS-EEEEEEES-------------GGGGGSSHHH-------HHHHHHHHHHTE----EEEEEEEEEEE-
T ss_pred cccCCCcceeehHH------------HHHHhcCCHHH-------HHHHHHHHHHhc----CCCCEEEEEecC
Confidence 22 4899995510 011111 2222 255788888886 999999987755
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00016 Score=71.46 Aligned_cols=130 Identities=17% Similarity=0.212 Sum_probs=73.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC-ccccCCCCcCEEEEC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~-~~~~~~~~fD~VLlD 256 (496)
.|.+||=+ |=+-.++..+++.+....|+.+|++..-+..+...+++.|+. +....+|.+.- |..+ .+.||.++.|
T Consensus 44 ~gk~il~l--GDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~-~~~fD~f~TD 119 (243)
T PF01861_consen 44 EGKRILFL--GDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEEL-RGKFDVFFTD 119 (243)
T ss_dssp TT-EEEEE--S-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTT-SS-BSEEEE-
T ss_pred cCCEEEEE--cCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHH-hcCCCEEEeC
Confidence 57888744 455555544455555579999999999999999999999998 99999999864 5443 3899999999
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcC-CH-HHHHHHHHhCCcE
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE-NE-AVIDYALKKRDVK 334 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eE-NE-~vV~~~L~~~~~~ 334 (496)
||.+..|+ .-.|.+++..| +.-|..+|-.++..+.- .+ ..++.++-..++-
T Consensus 120 PPyT~~G~-----------------------~LFlsRgi~~L----k~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~ 172 (243)
T PF01861_consen 120 PPYTPEGL-----------------------KLFLSRGIEAL----KGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLV 172 (243)
T ss_dssp --SSHHHH-----------------------HHHHHHHHHTB-----STT-EEEEEE-TTT--HHHHHHHHHHHHTS--E
T ss_pred CCCCHHHH-----------------------HHHHHHHHHHh----CCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcC
Confidence 99665442 22578888887 54454556655554311 11 2466666677877
Q ss_pred Eeec
Q 010971 335 LVPC 338 (496)
Q Consensus 335 lv~~ 338 (496)
+.++
T Consensus 173 i~di 176 (243)
T PF01861_consen 173 ITDI 176 (243)
T ss_dssp EEEE
T ss_pred HHHH
Confidence 7666
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00077 Score=70.05 Aligned_cols=169 Identities=20% Similarity=0.193 Sum_probs=97.2
Q ss_pred HHHHHHhCC-HHHHHHHHHHcCC--CCCeEEEEcCCCCCHH------------HHHHHHHHcCCccCCCCcCCcc-cEEE
Q 010971 79 IGALVEMFP-PVELMELIESFEK--PRPICLRTNTLKTRRR------------DLADVLINRGVNLDPLSKWSKV-GLVV 142 (496)
Q Consensus 79 ~~~l~~~~~-~~e~~~~lea~~~--~~P~~iRvNtlk~~~~------------~l~~~L~~~Gv~~~p~~~~~~~-gl~v 142 (496)
+......+| .+..-.+++++.. +.--.+||.|..++.. .|.++|...|+......+-.+. .+.+
T Consensus 73 ~~~~~~~lp~~DRi~pi~~~~~~~~~~~~~l~vE~pDtne~k~l~~fcrkf~~pLr~aL~~~g~l~~~~~~~~p~lh~~f 152 (357)
T PRK11760 73 VGELLKDLPPEDRISPIVAALQGVVPKFGELRVETPDTNEGKELSKFCRKFTVPLRQALRKAGVLTAKENPKRPVLHVFF 152 (357)
T ss_pred hhhHhhcCCcccchHHHHHHHhhcccccceeEEecCCCccchHHHHHHHHhHHHHHHHHHhCCccCCccCCCCcEEEEEE
Confidence 344555555 4566678888753 3334689887776532 3456788888865432111111 1111
Q ss_pred ecCC-C-----CCCCCcccccccEEEeCC---cchhH---HHh---cC--------CCCCCeEeeccCCCchHHHHHHHH
Q 010971 143 YDSQ-V-----PIGATPEYMAGFYMLQSA---SSFLP---VMA---LA--------PQEKERVIDMAAAPGGKTTYIAAL 199 (496)
Q Consensus 143 ~~~~-~-----~i~~~~~~~~G~~~iQd~---sS~l~---v~~---L~--------~~~g~~VLDmcAgpGgKT~~lA~l 199 (496)
.++. . ....+..|-.|.--+..+ -|.-. ..+ +. +.+|.+|||+||+|||+|-.+.+.
T Consensus 153 ~~~~~~~vG~s~~~~~s~~~~Gi~Rl~~p~~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r 232 (357)
T PRK11760 153 IAPGCCYVGYSYSNNSSPWPMGIPRLKFPADAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR 232 (357)
T ss_pred EeCCEEEEEeccCCCCCcCCCCcccccCCCCCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc
Confidence 1110 0 012333444554433332 22211 111 11 368999999999999999988876
Q ss_pred cCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCCC
Q 010971 200 MKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 200 ~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPC 259 (496)
.+.|+|+|..+ +...+ +.-.+|.....|+..+... ...+|.|+||.-|
T Consensus 233 ---G~~V~AVD~g~-----l~~~L--~~~~~V~h~~~d~fr~~p~--~~~vDwvVcDmve 280 (357)
T PRK11760 233 ---GMFVTAVDNGP-----MAQSL--MDTGQVEHLRADGFKFRPP--RKNVDWLVCDMVE 280 (357)
T ss_pred ---CCEEEEEechh-----cCHhh--hCCCCEEEEeccCcccCCC--CCCCCEEEEeccc
Confidence 35999999554 22223 3345688888887665322 3789999999864
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00032 Score=66.62 Aligned_cols=139 Identities=14% Similarity=0.159 Sum_probs=90.3
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaP 258 (496)
...+|++|||+|-.++++++...+....+|.|+|+..++...+.+..+++. +.++..|...- +..+++|+++.+||
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-~~~V~tdl~~~---l~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-IDVVRTDLLSG---LRNESVDVLVFNPP 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-cceeehhHHhh---hccCCccEEEECCC
Confidence 578999999999999999999887778899999999999999999988875 55556665432 23389999999999
Q ss_pred CCCCC--ccc-CCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCC
Q 010971 259 CSGTG--VIS-KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332 (496)
Q Consensus 259 CSg~G--~i~-r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~ 332 (496)
+--+- -+. ..-...|.-. ..-+.+....+..|...|.|.|.+...+|.-+ -.++++. +++..+
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG--------~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N--~p~ei~k-~l~~~g 185 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGG--------KDGREVTDRLLPQVPDILSPRGVFYLVALRAN--KPKEILK-ILEKKG 185 (209)
T ss_pred cCcCCcccchhHHHHHHHhcC--------cchHHHHHHHHhhhhhhcCcCceEEeeehhhc--CHHHHHH-HHhhcc
Confidence 75331 000 0001111100 11122233333333333589998887766543 2334444 666654
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.70 E-value=1.6e-05 Score=68.18 Aligned_cols=75 Identities=13% Similarity=0.287 Sum_probs=26.0
Q ss_pred eeccCCCchHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEEECCC
Q 010971 183 IDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 183 LDmcAgpGgKT~~lA~l~~~~g--~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VLlDaP 258 (496)
|++|++.|..|++|++.++..+ .++++|..+. .+...+.+++.++. ++.++.+|...+-..+....||.|++|++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 5789999999999998887655 7999999996 44555566656664 58999998865422232368999999986
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00024 Score=69.32 Aligned_cols=140 Identities=18% Similarity=0.183 Sum_probs=86.7
Q ss_pred cEEEeCCcchhHHHhcCCCC--CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec
Q 010971 159 FYMLQSASSFLPVMALAPQE--KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236 (496)
Q Consensus 159 ~~~iQd~sS~l~v~~L~~~~--g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~ 236 (496)
...||-+-+..+..+|++.+ ..-|||++||+|-.+..|.+- .-..+++|+|+.+|+.+.+ ..+. .. ++..
T Consensus 29 i~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~--~e~e-gd--lil~ 100 (270)
T KOG1541|consen 29 IVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVE--RELE-GD--LILC 100 (270)
T ss_pred eeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHH--hhhh-cC--eeee
Confidence 35577776666677777665 678999999999988766553 2378899999999999986 2222 12 2334
Q ss_pred CC-CCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHH---HHHHHHHhhhhcCCCCcEEEEEe
Q 010971 237 DG-NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQ---LILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 237 D~-~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~---LL~~A~~~l~~~lkpGG~LVYST 312 (496)
|+ .-+| +.++.||-||.= |. +-|..+.. ..+..-+++ .+.....+ |++|++-|+
T Consensus 101 DMG~Glp--frpGtFDg~ISI---SA---------vQWLcnA~--~s~~~P~~Rl~~FF~tLy~~----l~rg~raV~-- 158 (270)
T KOG1541|consen 101 DMGEGLP--FRPGTFDGVISI---SA---------VQWLCNAD--KSLHVPKKRLLRFFGTLYSC----LKRGARAVL-- 158 (270)
T ss_pred ecCCCCC--CCCCccceEEEe---ee---------eeeecccC--ccccChHHHHHHHhhhhhhh----hccCceeEE--
Confidence 43 3334 456899998751 11 11111110 011111222 23333344 499999887
Q ss_pred CCCCCcCCHHHHHHHHHh
Q 010971 313 CSIMVTENEAVIDYALKK 330 (496)
Q Consensus 313 CSi~~eENE~vV~~~L~~ 330 (496)
-+..||++.++.++..
T Consensus 159 --QfYpen~~q~d~i~~~ 174 (270)
T KOG1541|consen 159 --QFYPENEAQIDMIMQQ 174 (270)
T ss_pred --EecccchHHHHHHHHH
Confidence 4567999999988865
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.64 E-value=9.5e-05 Score=76.05 Aligned_cols=143 Identities=19% Similarity=0.201 Sum_probs=93.9
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHH-------HHHHHHHHcCCCe--EEEEecC
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLK-------SLTANLHRMGVTN--TIVCNYD 237 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~-------~l~~nl~r~g~~n--v~v~~~D 237 (496)
|++.+....+.||+.|+|=+.|+|+.-...|.. .+.|++-|++-..+. .+..|++.+|+.. +-++.+|
T Consensus 197 Sli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D 273 (421)
T KOG2671|consen 197 SLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTAD 273 (421)
T ss_pred HHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeec
Confidence 334444445789999999999999986654443 378999999887776 5789999999754 5677888
Q ss_pred CCCCccccCCCCcCEEEECCCCCCC---CcccCCchhhcc--------CCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Q 010971 238 GNELPKVLGLNTVDRVLLDAPCSGT---GVISKDESVKTS--------KSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (496)
Q Consensus 238 ~~~~~~~~~~~~fD~VLlDaPCSg~---G~i~r~p~~k~~--------~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG 306 (496)
...-+-. ....||.|+||||+--- -.+.++-.++.. ........+..+--.||.-+.+.| .-||
T Consensus 274 ~sn~~~r-sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L----~~gg 348 (421)
T KOG2671|consen 274 FSNPPLR-SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRL----VDGG 348 (421)
T ss_pred ccCcchh-hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhh----hcCc
Confidence 8775543 35689999999997321 111111111111 011223445555566777777765 9999
Q ss_pred EEEEEeCCCCCcCCH
Q 010971 307 YIVYSTCSIMVTENE 321 (496)
Q Consensus 307 ~LVYSTCSi~~eENE 321 (496)
++|+ |.|--+|
T Consensus 349 rlv~----w~p~~~e 359 (421)
T KOG2671|consen 349 RLVF----WLPTITE 359 (421)
T ss_pred eEEE----ecCchhh
Confidence 9997 5554444
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.64 E-value=5.3e-05 Score=81.07 Aligned_cols=107 Identities=22% Similarity=0.328 Sum_probs=86.2
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCcc--ccCCCCcCEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPK--VLGLNTVDRV 253 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~--~~~~~~fD~V 253 (496)
.++-+|||.-+|+|--++..|..+++-+.|+|||.++..++..+.|++.+++.+ ++....|+..+-- ......||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 457899999999999999999999998899999999999999999999999987 5677788765411 1112689999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
=+||= |+- -..|+.|++.+ +.||. ++.|||
T Consensus 188 DLDPy--Gs~------------------------s~FLDsAvqav----~~gGL-L~vT~T 217 (525)
T KOG1253|consen 188 DLDPY--GSP------------------------SPFLDSAVQAV----RDGGL-LCVTCT 217 (525)
T ss_pred ecCCC--CCc------------------------cHHHHHHHHHh----hcCCE-EEEEec
Confidence 99984 221 12589999998 88875 577887
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00012 Score=72.18 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=36.1
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHH-HHHH
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKS-LTAN 222 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~-l~~n 222 (496)
.+|.+|||+|||||+.|..+++. +.+.|+|+|+++..+.. ++++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~~l~~~ 118 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAEKLRQD 118 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHhcC
Confidence 36889999999999999999885 35789999999987764 4443
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00043 Score=65.97 Aligned_cols=71 Identities=20% Similarity=0.179 Sum_probs=51.3
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCC-CccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE-LPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~-~~~~~~~~~fD~VLl 255 (496)
.++.+|||+|||+|..+..++... ...++++|+++..++.+.. . ++.++..|+.. ++. +..++||.|++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~----~---~~~~~~~d~~~~l~~-~~~~sfD~Vi~ 81 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA----R---GVNVIQGDLDEGLEA-FPDKSFDYVIL 81 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH----c---CCeEEEEEhhhcccc-cCCCCcCEEEE
Confidence 468899999999999998887653 2467999999988877643 2 34566677654 222 23468999998
Q ss_pred CC
Q 010971 256 DA 257 (496)
Q Consensus 256 Da 257 (496)
..
T Consensus 82 ~~ 83 (194)
T TIGR02081 82 SQ 83 (194)
T ss_pred hh
Confidence 43
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00023 Score=67.12 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=50.0
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC--C-CeEEEEecCCCC-C-ccccCCCCcC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG--V-TNTIVCNYDGNE-L-PKVLGLNTVD 251 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g--~-~nv~v~~~D~~~-~-~~~~~~~~fD 251 (496)
..|.+||++|||.|--++.++.+. +...|++-|.++ -+..++.|++.++ . .++.+...|=.. . ........||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 468899999999999888888774 446899999999 9999999999987 2 346665544222 1 2223345899
Q ss_pred EEEE
Q 010971 252 RVLL 255 (496)
Q Consensus 252 ~VLl 255 (496)
+||.
T Consensus 122 ~Ila 125 (173)
T PF10294_consen 122 VILA 125 (173)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00038 Score=67.37 Aligned_cols=123 Identities=14% Similarity=0.195 Sum_probs=87.3
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEE-EEecCCCCCccccCCCCcCEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI-VCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~-v~~~D~~~~~~~~~~~~fD~V 253 (496)
.......||+++||||.-=-+.- +.+..+|+++|.++.+-+.+...+......++. ++.+|+..++.. .++++|.|
T Consensus 73 gk~~K~~vLEvgcGtG~Nfkfy~--~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l-~d~s~DtV 149 (252)
T KOG4300|consen 73 GKSGKGDVLEVGCGTGANFKFYP--WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQL-ADGSYDTV 149 (252)
T ss_pred cccCccceEEecccCCCCccccc--CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccc-ccCCeeeE
Confidence 33445678999999997543221 124469999999999999999999888666776 899999999864 46899999
Q ss_pred EEC-CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHh
Q 010971 254 LLD-APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330 (496)
Q Consensus 254 LlD-aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~ 330 (496)
++- .=||-. -+.+.|.+.-++| +|||++++-. +..+.-....++|+.
T Consensus 150 V~TlvLCSve-----------------------~~~k~L~e~~rlL----RpgG~iifiE---Hva~~y~~~n~i~q~ 197 (252)
T KOG4300|consen 150 VCTLVLCSVE-----------------------DPVKQLNEVRRLL----RPGGRIIFIE---HVAGEYGFWNRILQQ 197 (252)
T ss_pred EEEEEEeccC-----------------------CHHHHHHHHHHhc----CCCcEEEEEe---cccccchHHHHHHHH
Confidence 863 234432 1345577766765 9999998853 344444556666654
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00042 Score=71.71 Aligned_cols=112 Identities=16% Similarity=0.213 Sum_probs=81.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEEEC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.+..|||+|||+|-.++..|.. +...|+|+|.+.-. ..+.+.+..+|+.+ |.++.+...++. ++..++|+|+..
T Consensus 60 ~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~--LP~eKVDiIvSE 134 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE--LPVEKVDIIVSE 134 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe--cCccceeEEeeh
Confidence 5889999999999999877765 35799999988765 88999999999988 677777665542 223789999862
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
| ....-+...+|...+-.=+..|+|||.+.=++|+++.
T Consensus 135 ------------------W-----MGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l 172 (346)
T KOG1499|consen 135 ------------------W-----MGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYL 172 (346)
T ss_pred ------------------h-----hhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEE
Confidence 1 1122233334555554445568999999989998654
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.001 Score=65.46 Aligned_cols=116 Identities=16% Similarity=0.097 Sum_probs=83.8
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
....+..+..+|||+|.|.|..+..++...++ -+++..|. +.-++.+.+ ..+|.++.+|... .++ . +
T Consensus 93 ~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~---~~P-~-~ 159 (241)
T PF00891_consen 93 LEAFDFSGFKTVVDVGGGSGHFAIALARAYPN-LRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD---PLP-V-A 159 (241)
T ss_dssp HHHSTTTTSSEEEEET-TTSHHHHHHHHHSTT-SEEEEEE--HHHHCCHHH------TTTEEEEES-TTT---CCS-S-E
T ss_pred hccccccCccEEEeccCcchHHHHHHHHHCCC-Ccceeecc-Hhhhhcccc------ccccccccccHHh---hhc-c-c
Confidence 34455666779999999999999999999875 68999998 666666666 5679999999862 232 3 9
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC--cEEEEEeCCCCCcCCHHH
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG--GYIVYSTCSIMVTENEAV 323 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpG--G~LVYSTCSi~~eENE~v 323 (496)
|+|++ ..+...|+.++. ..||+++...+ +|| |+|+.....+.....+..
T Consensus 160 D~~~l-------------~~vLh~~~d~~~-------~~iL~~~~~al----~pg~~g~llI~e~~~~~~~~~~~ 210 (241)
T PF00891_consen 160 DVYLL-------------RHVLHDWSDEDC-------VKILRNAAAAL----KPGKDGRLLIIEMVLPDDRTGPP 210 (241)
T ss_dssp SEEEE-------------ESSGGGS-HHHH-------HHHHHHHHHHS----EECTTEEEEEEEEEECSSSSSHH
T ss_pred cceee-------------ehhhhhcchHHH-------HHHHHHHHHHh----CCCCCCeEEEEeeccCCCCCCch
Confidence 99998 234456666665 56788998886 999 999998887665554443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.52 E-value=5.5e-05 Score=77.64 Aligned_cols=89 Identities=22% Similarity=0.300 Sum_probs=64.2
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccC----
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG---- 246 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~---- 246 (496)
+.+|.++++..+||+.-|.||.|..|.+..++ |.|+|+|.|+..+..+.++++.. -.++.+++.++..+...+.
T Consensus 13 l~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~~~ 90 (310)
T PF01795_consen 13 LEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKELNG 90 (310)
T ss_dssp HHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHTTT
T ss_pred HHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHccC
Confidence 56677999999999999999999999999887 99999999999999998888765 3468889988877754432
Q ss_pred CCCcCEEEECCCCCC
Q 010971 247 LNTVDRVLLDAPCSG 261 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg 261 (496)
...+|-||+|-=+|.
T Consensus 91 ~~~~dgiL~DLGvSS 105 (310)
T PF01795_consen 91 INKVDGILFDLGVSS 105 (310)
T ss_dssp TS-EEEEEEE-S--H
T ss_pred CCccCEEEEccccCH
Confidence 258999999988774
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0007 Score=66.82 Aligned_cols=114 Identities=8% Similarity=-0.041 Sum_probs=74.3
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH------------HHcCCCeEEEEecCCCCCc
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL------------HRMGVTNTIVCNYDGNELP 242 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl------------~r~g~~nv~v~~~D~~~~~ 242 (496)
.+.+|.+||+.+||.|--..+||+. .-.|+|+|+|+..++.+.+.. .+..-.++.+.++|...++
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~ 116 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP 116 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence 3446789999999999999999885 247999999999999875521 1122236889999998875
Q ss_pred cc-cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 243 KV-LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 243 ~~-~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.. ...+.||.|.- |...-. ..++. -.+...+...+| +|||.++..|-..
T Consensus 117 ~~~~~~~~fD~VyD---ra~~~A----------lpp~~-------R~~Y~~~l~~lL----~pgg~llll~~~~ 166 (226)
T PRK13256 117 KIANNLPVFDIWYD---RGAYIA----------LPNDL-------RTNYAKMMLEVC----SNNTQILLLVMEH 166 (226)
T ss_pred ccccccCCcCeeee---ehhHhc----------CCHHH-------HHHHHHHHHHHh----CCCcEEEEEEEec
Confidence 21 11257999753 111111 11111 122345555554 9999998877543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00027 Score=69.40 Aligned_cols=129 Identities=12% Similarity=0.174 Sum_probs=82.9
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
..+-.++||+|||+|-.+-.|-.+. ..++++|+|..+++.+.+. |+-. .+.+.|+..|........||+|..
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~YD-~L~~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLYD-TLYVAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred CCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cchH-HHHHHHHHHHhhhccCCcccchhh
Confidence 3445899999999999998887775 4799999999999876543 2211 122334433433233478999842
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcC------------CHHH
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE------------NEAV 323 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eE------------NE~v 323 (496)
.++.....--..++-.+...| .|||.+.||.=++-.+- .+.-
T Consensus 195 ----------------------aDVl~YlG~Le~~~~~aa~~L----~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~Y 248 (287)
T COG4976 195 ----------------------ADVLPYLGALEGLFAGAAGLL----APGGLFAFSVETLPDDGGFVLGPSQRYAHSESY 248 (287)
T ss_pred ----------------------hhHHHhhcchhhHHHHHHHhc----CCCceEEEEecccCCCCCeecchhhhhccchHH
Confidence 333333333344666666665 99999999987764432 3455
Q ss_pred HHHHHHhCCcEEeec
Q 010971 324 IDYALKKRDVKLVPC 338 (496)
Q Consensus 324 V~~~L~~~~~~lv~~ 338 (496)
|...|+..+++++.+
T Consensus 249 Vr~~l~~~Gl~~i~~ 263 (287)
T COG4976 249 VRALLAASGLEVIAI 263 (287)
T ss_pred HHHHHHhcCceEEEe
Confidence 556666666666654
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=4.4e-05 Score=75.18 Aligned_cols=98 Identities=14% Similarity=0.188 Sum_probs=61.9
Q ss_pred ccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEE
Q 010971 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTI 232 (496)
Q Consensus 154 ~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~ 232 (496)
-|+.-+|..++-...+++.- .+-++||.+|||.|....-|.+-.++. -.|+|+|.++..+..++.+....- .++.
T Consensus 50 FfkdR~wL~~Efpel~~~~~---~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~ 125 (264)
T KOG2361|consen 50 FFKDRNWLLREFPELLPVDE---KSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVE 125 (264)
T ss_pred ccchhHHHHHhhHHhhCccc---cChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhc
Confidence 35666677766433332211 122389999999999998888766553 489999999999999998876543 2333
Q ss_pred EEecCCC--CCccccCCCCcCEEEE
Q 010971 233 VCNYDGN--ELPKVLGLNTVDRVLL 255 (496)
Q Consensus 233 v~~~D~~--~~~~~~~~~~fD~VLl 255 (496)
....|.. .+......+++|.|.+
T Consensus 126 afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 126 AFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred ccceeccchhccCCCCcCccceEEE
Confidence 3333432 2222234467776644
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00019 Score=72.54 Aligned_cols=79 Identities=23% Similarity=0.258 Sum_probs=59.5
Q ss_pred eEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCCCC
Q 010971 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCS 260 (496)
Q Consensus 181 ~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCS 260 (496)
+|+|+|||.||.+..+.+. +--.|+|+|+++..++..+.|.... +.+.|...+........+|+|+.+|||.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~~------~~~~Di~~~~~~~~~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPNK------LIEGDITKIDEKDFIPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCCC------CccCccccCchhhcCCCCCEEEeCCCCh
Confidence 6999999999998877654 3357899999999999999887432 4556766654221025799999999998
Q ss_pred CCCcccC
Q 010971 261 GTGVISK 267 (496)
Q Consensus 261 g~G~i~r 267 (496)
+.....+
T Consensus 74 ~fS~ag~ 80 (275)
T cd00315 74 PFSIAGK 80 (275)
T ss_pred hhhHHhh
Confidence 8766554
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00055 Score=68.28 Aligned_cols=134 Identities=15% Similarity=0.150 Sum_probs=87.7
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC----CeEEEEecCCCCCccccC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV----TNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~----~nv~v~~~D~~~~~~~~~ 246 (496)
++++.+ ...+||=+|.|.|+.+..+...- .-..|+++|+++.-++.++.-+..... .++.++..|+..+-....
T Consensus 70 ~~~~~~-~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~ 147 (246)
T PF01564_consen 70 PLLLHP-NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQ 147 (246)
T ss_dssp HHHHSS-ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSS
T ss_pred HhhcCC-CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhcc
Confidence 333444 56799999999999887776542 236899999999999999988776433 368999999988754433
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~ 326 (496)
...||+|++|++= ..|.. .. ..+ .+.+..+.+.| +|||.++.-..|. ..++..+..
T Consensus 148 ~~~yDvIi~D~~d-p~~~~-----~~-l~t-----------~ef~~~~~~~L----~~~Gv~v~~~~~~--~~~~~~~~~ 203 (246)
T PF01564_consen 148 EEKYDVIIVDLTD-PDGPA-----PN-LFT-----------REFYQLCKRRL----KPDGVLVLQAGSP--FLHPELFKS 203 (246)
T ss_dssp ST-EEEEEEESSS-TTSCG-----GG-GSS-----------HHHHHHHHHHE----EEEEEEEEEEEET--TTTHHHHHH
T ss_pred CCcccEEEEeCCC-CCCCc-----cc-ccC-----------HHHHHHHHhhc----CCCcEEEEEccCc--ccchHHHHH
Confidence 2289999999873 22211 00 112 34456666665 9999998765333 345666665
Q ss_pred HHHh
Q 010971 327 ALKK 330 (496)
Q Consensus 327 ~L~~ 330 (496)
+.+.
T Consensus 204 i~~t 207 (246)
T PF01564_consen 204 ILKT 207 (246)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0007 Score=73.19 Aligned_cols=121 Identities=18% Similarity=0.208 Sum_probs=78.3
Q ss_pred CCeEeeccCCCchHHHHHHHHc---CCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEE
Q 010971 179 KERVIDMAAAPGGKTTYIAALM---KNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~---~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
+-.|||+|||+|-.+...++.. +....|+|+|.|+.....++..++..|.. .|.++++|++.+... ..+|+|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp---ekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP---EKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS---S-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC---CceeEEE
Confidence 4689999999999986655442 34469999999999999999988999985 499999999998532 5899998
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC--CCCcCCHHHHHH
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS--IMVTENEAVIDY 326 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS--i~~eENE~vV~~ 326 (496)
..- +|.+.-+. ++ -+.|..+-++ |+|||.++=+.++ +.|-+.+..-..
T Consensus 264 SEl----LGsfg~nE-------------l~---pE~Lda~~rf----Lkp~Gi~IP~~~t~ylaPiss~~l~~~ 313 (448)
T PF05185_consen 264 SEL----LGSFGDNE-------------LS---PECLDAADRF----LKPDGIMIPSSYTSYLAPISSPKLYQE 313 (448)
T ss_dssp E-------BTTBTTT-------------SH---HHHHHHGGGG----EEEEEEEESSEEEEEEEEEE-HHHHHH
T ss_pred Eec----cCCccccc-------------cC---HHHHHHHHhh----cCCCCEEeCcchhhEEEEeeCHHHHHH
Confidence 743 23222111 11 1235555555 4999999733333 445555554443
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.002 Score=60.51 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=83.4
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---cCCCCc
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LGLNTV 250 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~~~~~f 250 (496)
.++..|--||++|.|+|-.|-.|...+-....++++|.|++-...|.+.. ..+.++++|+..+... .....|
T Consensus 44 I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~e~~gq~~ 118 (194)
T COG3963 44 IDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLGEHKGQFF 118 (194)
T ss_pred cCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHHHhhcCCCee
Confidence 46788999999999999999998888776779999999999888776543 3355788888665421 234679
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
|.|++-.|-- +... +.-.+||+.+...+ ++||-||--|-+
T Consensus 119 D~viS~lPll-------------~~P~-------~~~iaile~~~~rl----~~gg~lvqftYg 158 (194)
T COG3963 119 DSVISGLPLL-------------NFPM-------HRRIAILESLLYRL----PAGGPLVQFTYG 158 (194)
T ss_pred eeEEeccccc-------------cCcH-------HHHHHHHHHHHHhc----CCCCeEEEEEec
Confidence 9999877721 1111 11245788888876 999999987777
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00052 Score=69.89 Aligned_cols=90 Identities=22% Similarity=0.301 Sum_probs=76.0
Q ss_pred HHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc---C
Q 010971 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---G 246 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~---~ 246 (496)
++.+|.+.|+...||+.-|-||.|-.|...++..|.++|+|.++..++.+++.+..++ .++.+++..+..+...+ .
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~~ 93 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKELG 93 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHhcC
Confidence 3567889999999999999999999999999888999999999999999999999887 57888888776664333 2
Q ss_pred CCCcCEEEECCCCC
Q 010971 247 LNTVDRVLLDAPCS 260 (496)
Q Consensus 247 ~~~fD~VLlDaPCS 260 (496)
...||-||+|-=-|
T Consensus 94 i~~vDGiL~DLGVS 107 (314)
T COG0275 94 IGKVDGILLDLGVS 107 (314)
T ss_pred CCceeEEEEeccCC
Confidence 35899999985444
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0025 Score=62.04 Aligned_cols=121 Identities=17% Similarity=0.214 Sum_probs=84.9
Q ss_pred EeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEEECCCCC
Q 010971 182 VIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPCS 260 (496)
Q Consensus 182 VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLlDaPCS 260 (496)
|.|+||--|-..++|.+.- ....++|+|+++.=++.+++++++.|+.+ +.+..+|+...-.. ....|.|++ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~--~e~~d~ivI----A 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP--GEDVDTIVI----A 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G--GG---EEEE----E
T ss_pred CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC--CCCCCEEEE----e
Confidence 7899999999999888752 23479999999999999999999999876 88999998653221 133788877 4
Q ss_pred CCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEEeec
Q 010971 261 GTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 261 g~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~lv~~ 338 (496)
|+| ..+-.+||......+ +....||. .|.-+...+..+|..++|.+++-
T Consensus 74 GMG--------------------G~lI~~ILe~~~~~~----~~~~~lIL-----qP~~~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 74 GMG--------------------GELIIEILEAGPEKL----SSAKRLIL-----QPNTHAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp EE---------------------HHHHHHHHHHTGGGG----TT--EEEE-----EESS-HHHHHHHHHHTTEEEEEE
T ss_pred cCC--------------------HHHHHHHHHhhHHHh----ccCCeEEE-----eCCCChHHHHHHHHHCCCEEEEe
Confidence 555 234567888877665 55556765 45568889999999999988764
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00082 Score=67.43 Aligned_cols=88 Identities=22% Similarity=0.087 Sum_probs=69.2
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc-
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL- 245 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~- 245 (496)
....+..+++.++..|||+|+|+|..|..|+... ..|+++|+++..+..|++.+. ...++.++++|+..+....
T Consensus 19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGGGH
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccHHh
Confidence 3455677788899999999999999999998875 689999999999999988776 4568999999998875321
Q ss_pred CCCCcCEEEECCCC
Q 010971 246 GLNTVDRVLLDAPC 259 (496)
Q Consensus 246 ~~~~fD~VLlDaPC 259 (496)
-......|+.+.|.
T Consensus 94 ~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 94 LKNQPLLVVGNLPY 107 (262)
T ss_dssp CSSSEEEEEEEETG
T ss_pred hcCCceEEEEEecc
Confidence 01345678887774
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0013 Score=58.85 Aligned_cols=58 Identities=24% Similarity=0.241 Sum_probs=50.4
Q ss_pred eEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCC
Q 010971 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (496)
Q Consensus 181 ~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~ 239 (496)
+|||+||+.|..+..++...+ .+.|+++|.++..+..++.|+..+++.++.+++....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 489999999999999988753 4699999999999999999999999888877776543
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0015 Score=68.22 Aligned_cols=119 Identities=22% Similarity=0.251 Sum_probs=87.3
Q ss_pred eCCcchhHHHhcCCCC---CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCC
Q 010971 163 QSASSFLPVMALAPQE---KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (496)
Q Consensus 163 Qd~sS~l~v~~L~~~~---g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~ 239 (496)
|.-..-+.+.++..-. ..+|||.-+|+|--++-+|--.+.. .|++||+|+..++.++.|+..+...+..+++.|+.
T Consensus 34 m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN 112 (380)
T COG1867 34 MEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDAN 112 (380)
T ss_pred hhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcccceeecchHH
Confidence 3333334444443333 7899999999999999888877654 89999999999999999999996667777778886
Q ss_pred CCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 240 ELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 240 ~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.+-... ...||+|=+||= |+- --.+.+|+..+ +.||+|.. |||
T Consensus 113 ~lm~~~-~~~fd~IDiDPF--GSP------------------------aPFlDaA~~s~----~~~G~l~v-TAT 155 (380)
T COG1867 113 ALLHEL-HRAFDVIDIDPF--GSP------------------------APFLDAALRSV----RRGGLLCV-TAT 155 (380)
T ss_pred HHHHhc-CCCccEEecCCC--CCC------------------------chHHHHHHHHh----hcCCEEEE-Eec
Confidence 653322 268999999973 221 12488888887 88887754 554
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.003 Score=61.26 Aligned_cols=129 Identities=20% Similarity=0.300 Sum_probs=85.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeE-EEEecCCCCCcccc------CCCCc
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT-IVCNYDGNELPKVL------GLNTV 250 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv-~v~~~D~~~~~~~~------~~~~f 250 (496)
.+.+||+++||+|--+.|+|+.+++ -.-.--|.+...+..+.+.+...|+.|+ ..+..|+..-+... ....|
T Consensus 25 ~~~~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~ 103 (204)
T PF06080_consen 25 SGTRVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESF 103 (204)
T ss_pred cCceEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCc
Confidence 3446999999999999999999975 5667889999999999999999999885 33455655432212 23589
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEE-EEeCCC---CCcCCHHHHHH
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV-YSTCSI---MVTENEAVIDY 326 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LV-YSTCSi---~~eENE~vV~~ 326 (496)
|.|++ ...-+|..-... ..|+..|.++| ++||.|+ |---.. +..|.-..-+.
T Consensus 104 D~i~~-------------------~N~lHI~p~~~~-~~lf~~a~~~L----~~gG~L~~YGPF~~~G~~ts~SN~~FD~ 159 (204)
T PF06080_consen 104 DAIFC-------------------INMLHISPWSAV-EGLFAGAARLL----KPGGLLFLYGPFNRDGKFTSESNAAFDA 159 (204)
T ss_pred ceeee-------------------hhHHHhcCHHHH-HHHHHHHHHhC----CCCCEEEEeCCcccCCEeCCcHHHHHHH
Confidence 99986 111222222222 44778888876 9999875 554443 22333344455
Q ss_pred HHHhC
Q 010971 327 ALKKR 331 (496)
Q Consensus 327 ~L~~~ 331 (496)
.|+.+
T Consensus 160 sLr~r 164 (204)
T PF06080_consen 160 SLRSR 164 (204)
T ss_pred HHhcC
Confidence 56554
|
The function of this family is unknown. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0049 Score=62.83 Aligned_cols=120 Identities=16% Similarity=0.196 Sum_probs=85.9
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEecCCCCCccccC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----VTNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g----~~nv~v~~~D~~~~~~~~~ 246 (496)
.++..+.| .+||=+|-|.|+.+-.+..... --.++.+|+++.-++.+++-+.... -+.+.++..|+..+-....
T Consensus 70 ~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~ 147 (282)
T COG0421 70 PLLAHPNP-KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE 147 (282)
T ss_pred hhhhCCCC-CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC
Confidence 44455666 5999999999999988877653 4689999999999999999887664 3458889999988865443
Q ss_pred CCCcCEEEECCC-CCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 247 LNTVDRVLLDAP-CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 247 ~~~fD~VLlDaP-CSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
..||+|++|.- +.|-| + . -...+.+..+.+.| +++|.+|.=+=|..
T Consensus 148 -~~fDvIi~D~tdp~gp~-----~-~-------------Lft~eFy~~~~~~L----~~~Gi~v~q~~~~~ 194 (282)
T COG0421 148 -EKFDVIIVDSTDPVGPA-----E-A-------------LFTEEFYEGCRRAL----KEDGIFVAQAGSPF 194 (282)
T ss_pred -CcCCEEEEcCCCCCCcc-----c-c-------------cCCHHHHHHHHHhc----CCCcEEEEecCCcc
Confidence 47999999942 11111 0 0 11234466666665 99999988755533
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0033 Score=62.99 Aligned_cols=94 Identities=21% Similarity=0.288 Sum_probs=63.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
...++||+|||-|+.|..|+.+.. .|+|-|+|+.+.. ++.+-|.+ ++..| ++... ...||+|-|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~----rL~~kg~~---vl~~~--~w~~~--~~~fDvIsc-- 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRW----RLSKKGFT---VLDID--DWQQT--DFKFDVISC-- 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHH----HHHhCCCe---EEehh--hhhcc--CCceEEEee--
Confidence 357899999999999999999874 5999999987654 44555664 22222 23221 257999965
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.-++.|. ..-..||..+.+.+ +|+|+++.+
T Consensus 158 ----LNvLDRc----------------~~P~~LL~~i~~~l----~p~G~lilA 187 (265)
T PF05219_consen 158 ----LNVLDRC----------------DRPLTLLRDIRRAL----KPNGRLILA 187 (265)
T ss_pred ----hhhhhcc----------------CCHHHHHHHHHHHh----CCCCEEEEE
Confidence 3333332 11245677777776 999999865
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0025 Score=69.86 Aligned_cols=148 Identities=17% Similarity=0.111 Sum_probs=85.9
Q ss_pred cccEEEeCCcchhHHHhcCCC--CCCeEeeccCCCchHHHHHHHHcC---CCcEEEEEeCCHHHHHHHHHHHHHcCCC--
Q 010971 157 AGFYMLQSASSFLPVMALAPQ--EKERVIDMAAAPGGKTTYIAALMK---NTGLIYANEMKASRLKSLTANLHRMGVT-- 229 (496)
Q Consensus 157 ~G~~~iQd~sS~l~v~~L~~~--~g~~VLDmcAgpGgKT~~lA~l~~---~~g~V~A~D~s~~rl~~l~~nl~r~g~~-- 229 (496)
.|.|+.-..-+.+.+.++.+. |+..|.|+|||+|+.-......+. ....+++.+.+.........|+.-.|+.
T Consensus 194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~ 273 (501)
T TIGR00497 194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYA 273 (501)
T ss_pred CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcc
Confidence 343433323334445566654 678999999999998765443332 1236899999999999888887666653
Q ss_pred eEEEEecCCCCCccccCCCCcCEEEECCCCCCC---CcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Q 010971 230 NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT---GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (496)
Q Consensus 230 nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~---G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG 306 (496)
...+..+|...-+.......||.|+.+||.+.. |.........+.+....+..+.......+.+++..| ++||
T Consensus 274 t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L----~~gG 349 (501)
T TIGR00497 274 NFNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVL----GQEG 349 (501)
T ss_pred ccCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhc----CCCC
Confidence 233334454332222223579999999998764 111111111111111111223344566677787776 8998
Q ss_pred EE
Q 010971 307 YI 308 (496)
Q Consensus 307 ~L 308 (496)
+.
T Consensus 350 ~~ 351 (501)
T TIGR00497 350 TA 351 (501)
T ss_pred eE
Confidence 64
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0029 Score=62.69 Aligned_cols=87 Identities=20% Similarity=0.108 Sum_probs=59.1
Q ss_pred hhHHHhcCCCCCC--eEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC----C-----CeEEEEec
Q 010971 168 FLPVMALAPQEKE--RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----V-----TNTIVCNY 236 (496)
Q Consensus 168 ~l~v~~L~~~~g~--~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g----~-----~nv~v~~~ 236 (496)
...+.++.+++|. +|||+.||-|.=++.+|.+ + +.|+++|.|+--...+..-++++. . ..+.+++.
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 4556777777765 9999999999999999875 3 689999999999888887777652 1 35899999
Q ss_pred CCCCCccccCCCCcCEEEECCC
Q 010971 237 DGNELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 237 D~~~~~~~~~~~~fD~VLlDaP 258 (496)
|+..+-. ....+||+|.+||=
T Consensus 140 d~~~~L~-~~~~s~DVVY~DPM 160 (234)
T PF04445_consen 140 DALEYLR-QPDNSFDVVYFDPM 160 (234)
T ss_dssp -CCCHCC-CHSS--SEEEE--S
T ss_pred CHHHHHh-hcCCCCCEEEECCC
Confidence 9988754 33579999999983
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0029 Score=63.64 Aligned_cols=138 Identities=16% Similarity=0.137 Sum_probs=92.2
Q ss_pred ccEEEeCCcc-hhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEe
Q 010971 158 GFYMLQSASS-FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCN 235 (496)
Q Consensus 158 G~~~iQd~sS-~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~ 235 (496)
|.+++-.+.- .-.+...+.++++.||++|-|||..|..|.+.. .+|+|+|+++..+..+..+.+-....+ ..++.
T Consensus 37 GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~ 113 (315)
T KOG0820|consen 37 GQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLH 113 (315)
T ss_pred chhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEEe
Confidence 5555554321 112344567899999999999999999888763 589999999999999999987665544 78899
Q ss_pred cCCCCCccccCCCCcCEEEECCCCCCC--Cccc--CCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 236 YDGNELPKVLGLNTVDRVLLDAPCSGT--GVIS--KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 236 ~D~~~~~~~~~~~~fD~VLlDaPCSg~--G~i~--r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
+|....+. ..||.++.+-|+--+ +++- .++.+.|. ....+|++. |++++ -+| |...|+
T Consensus 114 gD~lK~d~----P~fd~cVsNlPyqISSp~vfKLL~~~~~fr~-------AvlmfQ~Ef---a~RLv---a~p-gd~~Yc 175 (315)
T KOG0820|consen 114 GDFLKTDL----PRFDGCVSNLPYQISSPLVFKLLLHRPVFRC-------AVLMFQREF---ALRLV---ARP-GDSLYC 175 (315)
T ss_pred cccccCCC----cccceeeccCCccccCHHHHHhcCCCCCcce-------eeeehhhhh---hhhhc---cCC-CCchhc
Confidence 99877542 469999999887433 3221 11211111 112355543 45555 155 677787
Q ss_pred eCCCC
Q 010971 312 TCSIM 316 (496)
Q Consensus 312 TCSi~ 316 (496)
--|++
T Consensus 176 rlsin 180 (315)
T KOG0820|consen 176 RLSIN 180 (315)
T ss_pred eeehh
Confidence 77775
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0055 Score=59.64 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=53.9
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH-------HHcCC--CeEEEEecCCCCCc
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL-------HRMGV--TNTIVCNYDGNELP 242 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl-------~r~g~--~nv~v~~~D~~~~~ 242 (496)
..+++.+++..+|+|||.|.-.++.|... +-...+++|+.+.+...+..+. +.+|. ..+.+..+|+.+.+
T Consensus 36 ~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~ 114 (205)
T PF08123_consen 36 DELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPD 114 (205)
T ss_dssp HHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHH
T ss_pred HHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccH
Confidence 45678899999999999999888777655 4457999999999887665443 33454 35778888876543
Q ss_pred ---cccCCCCcCEEEECCCCC
Q 010971 243 ---KVLGLNTVDRVLLDAPCS 260 (496)
Q Consensus 243 ---~~~~~~~fD~VLlDaPCS 260 (496)
..+ ...|+|+++.=|.
T Consensus 115 ~~~~~~--s~AdvVf~Nn~~F 133 (205)
T PF08123_consen 115 FVKDIW--SDADVVFVNNTCF 133 (205)
T ss_dssp HHHHHG--HC-SEEEE--TTT
T ss_pred hHhhhh--cCCCEEEEecccc
Confidence 112 4689999987664
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.03 Score=52.69 Aligned_cols=139 Identities=17% Similarity=0.161 Sum_probs=91.5
Q ss_pred cCCCchHHHHHHHHcCCCcEEEEE--eCCHHHHHH---HHHHHHHcCCCe-EEEEecCCCCCcccc--CCCCcCEEEECC
Q 010971 186 AAAPGGKTTYIAALMKNTGLIYAN--EMKASRLKS---LTANLHRMGVTN-TIVCNYDGNELPKVL--GLNTVDRVLLDA 257 (496)
Q Consensus 186 cAgpGgKT~~lA~l~~~~g~V~A~--D~s~~rl~~---l~~nl~r~g~~n-v~v~~~D~~~~~~~~--~~~~fD~VLlDa 257 (496)
|=|--++|..|+...+....|+|- |....-++. +..|+..+.-.+ .++...|++.+.... ....||+|+-+=
T Consensus 4 GeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFNF 83 (166)
T PF10354_consen 4 GEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFNF 83 (166)
T ss_pred eccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEeC
Confidence 344456667777776633455554 544433332 335666553333 344567998887665 567899999999
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEEee
Q 010971 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVP 337 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~lv~ 337 (496)
|+.|.|.- .....+.....+-...+.+|..++ +++|.|..+-|.-.|- +...|..+.++.++.++.
T Consensus 84 PH~G~~~~---------~~~~~i~~nr~Ll~~Ff~Sa~~~L----~~~G~IhVTl~~~~py-~~W~i~~lA~~~gl~l~~ 149 (166)
T PF10354_consen 84 PHVGGGSE---------DGKRNIRLNRELLRGFFKSASQLL----KPDGEIHVTLKDGQPY-DSWNIEELAAEAGLVLVR 149 (166)
T ss_pred CCCCCCcc---------chhHHHHHHHHHHHHHHHHHHHhc----CCCCEEEEEeCCCCCC-ccccHHHHHHhcCCEEEE
Confidence 99985432 223444445555566777777776 9999999999998775 777777777777877766
Q ss_pred c
Q 010971 338 C 338 (496)
Q Consensus 338 ~ 338 (496)
.
T Consensus 150 ~ 150 (166)
T PF10354_consen 150 K 150 (166)
T ss_pred E
Confidence 4
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0029 Score=58.70 Aligned_cols=81 Identities=11% Similarity=0.092 Sum_probs=56.5
Q ss_pred EEEeCCHHHHHHHHHHHHHcC---CCeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHH
Q 010971 207 YANEMKASRLKSLTANLHRMG---VTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC 283 (496)
Q Consensus 207 ~A~D~s~~rl~~l~~nl~r~g---~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l 283 (496)
+|+|+|+.+++.++++....+ ..++.++.+|+..+| +..+.||.|++. .++ +. +
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~v~~~-----~~l-~~---------------~ 57 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP--FDDCEFDAVTMG-----YGL-RN---------------V 57 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC--CCCCCeeEEEec-----chh-hc---------------C
Confidence 479999999999987765322 356899999999887 344789999861 221 00 0
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 284 SYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 284 ~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
. -..+.|.++.+.| ||||+|+....+.
T Consensus 58 ~-d~~~~l~ei~rvL----kpGG~l~i~d~~~ 84 (160)
T PLN02232 58 V-DRLRAMKEMYRVL----KPGSRVSILDFNK 84 (160)
T ss_pred C-CHHHHHHHHHHHc----CcCeEEEEEECCC
Confidence 0 1234577777765 9999999877663
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0046 Score=62.55 Aligned_cols=77 Identities=25% Similarity=0.335 Sum_probs=56.3
Q ss_pred eEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc-ccCCCCcCEEEECCCC
Q 010971 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK-VLGLNTVDRVLLDAPC 259 (496)
Q Consensus 181 ~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~-~~~~~~fD~VLlDaPC 259 (496)
+|+|+|||.||.++-+.+. +--.|+|+|+++..++..+.|.. .+...|...+.. .++. .+|+++.=|||
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~-~~D~l~ggpPC 71 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPK-DVDLLIGGPPC 71 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHH-T-SEEEEE---
T ss_pred cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccc-cceEEEeccCC
Confidence 7999999999999877664 22378999999999999999986 566778777632 2322 59999999999
Q ss_pred CCCCcccC
Q 010971 260 SGTGVISK 267 (496)
Q Consensus 260 Sg~G~i~r 267 (496)
.+..+..+
T Consensus 72 Q~fS~ag~ 79 (335)
T PF00145_consen 72 QGFSIAGK 79 (335)
T ss_dssp TTTSTTST
T ss_pred ceEecccc
Confidence 99877764
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0015 Score=62.77 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=57.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
.|.+|||+|||+|--++..+. .+...|++.|+++.....+.-|++.+|+ ++.++..|... . +..||+||+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~--aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g-~----~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAAR--AGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG-S----PPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHH--hhhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC-C----CcceeEEEe
Confidence 589999999999987764333 3556899999999999999999999996 57777777654 2 267999997
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0052 Score=59.82 Aligned_cols=110 Identities=24% Similarity=0.237 Sum_probs=60.4
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.++-.|-|||||-+..+ +..++.-.|...|+-.. |-.|+..|...+| +.++.+|++++
T Consensus 71 ~~~~viaD~GCGdA~la----~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vP--L~~~svDv~Vf- 128 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLA----KAVPNKHKVHSFDLVAP---------------NPRVTACDIANVP--LEDESVDVAVF- 128 (219)
T ss_dssp -TTS-EEEES-TT-HHH----HH--S---EEEEESS-S---------------STTEEES-TTS-S----TT-EEEEEE-
T ss_pred CCCEEEEECCCchHHHH----HhcccCceEEEeeccCC---------------CCCEEEecCccCc--CCCCceeEEEE-
Confidence 34679999999998654 55555457999998752 2235667888888 45689999987
Q ss_pred CCC-CCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEE
Q 010971 257 APC-SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKL 335 (496)
Q Consensus 257 aPC-Sg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~l 335 (496)
| |-+|+ --...|.+|.+.| ||||.|....-.-- -+|-..-...+...||++
T Consensus 129 --cLSLMGT---------------------n~~~fi~EA~RvL----K~~G~L~IAEV~SR-f~~~~~F~~~~~~~GF~~ 180 (219)
T PF05148_consen 129 --CLSLMGT---------------------NWPDFIREANRVL----KPGGILKIAEVKSR-FENVKQFIKALKKLGFKL 180 (219)
T ss_dssp --ES---SS----------------------HHHHHHHHHHHE----EEEEEEEEEEEGGG--S-HHHHHHHHHCTTEEE
T ss_pred --EhhhhCC---------------------CcHHHHHHHHhee----ccCcEEEEEEeccc-CcCHHHHHHHHHHCCCeE
Confidence 5 33342 1234689999987 99999977653321 234433334455556655
Q ss_pred e
Q 010971 336 V 336 (496)
Q Consensus 336 v 336 (496)
.
T Consensus 181 ~ 181 (219)
T PF05148_consen 181 K 181 (219)
T ss_dssp E
T ss_pred E
Confidence 4
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.019 Score=59.63 Aligned_cols=128 Identities=10% Similarity=0.020 Sum_probs=80.3
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEE--EecCCCCCccccC----
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKN---TGLIYANEMKASRLKSLTANLHRMGVTNTIV--CNYDGNELPKVLG---- 246 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~---~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v--~~~D~~~~~~~~~---- 246 (496)
+.++..|+|+|||.|.||..|.+.+.. ...-+++|+|...|..+..++..-.+..+.+ +++|......+++
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence 356789999999999999988877643 2468999999999999999998444555444 6676644322111
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHH-hhhhcCCCCcEEEEEeCCCCCcCCHHHHH
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAID-MVDANSKSGGYIVYSTCSIMVTENEAVID 325 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~-~l~~~lkpGG~LVYSTCSi~~eENE~vV~ 325 (496)
......|+. |=|..|- .++.+. ..+|....+ .+ .|||.|+... --..+.++|.
T Consensus 154 ~~~~r~~~f--lGSsiGN----------f~~~ea-------~~fL~~~~~~~l----~~~d~lLiG~---D~~k~~~~l~ 207 (319)
T TIGR03439 154 RSRPTTILW--LGSSIGN----------FSRPEA-------AAFLAGFLATAL----SPSDSFLIGL---DGCKDPDKVL 207 (319)
T ss_pred cCCccEEEE--eCccccC----------CCHHHH-------HHHHHHHHHhhC----CCCCEEEEec---CCCCCHHHHH
Confidence 133555554 3333332 222222 234555545 44 9999998853 3335566665
Q ss_pred HHHH
Q 010971 326 YALK 329 (496)
Q Consensus 326 ~~L~ 329 (496)
.+-.
T Consensus 208 ~AY~ 211 (319)
T TIGR03439 208 RAYN 211 (319)
T ss_pred HHhc
Confidence 5543
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.01 Score=58.19 Aligned_cols=113 Identities=13% Similarity=0.095 Sum_probs=73.1
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH------------cCCCeEEEEecCCCCC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR------------MGVTNTIVCNYDGNEL 241 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r------------~g~~nv~v~~~D~~~~ 241 (496)
+...++.+||+-+||.|--...||+. .-.|+|+|+|+..++.+.+.... ....+|.+.++|...+
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 44678899999999999999999885 24899999999999887432211 1123578899999887
Q ss_pred ccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 242 ~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
+... .+.||.|.= |+..-.+ +|+.+ .+...+...+| +|||.+++.|-.
T Consensus 110 ~~~~-~g~fD~iyD---r~~l~Al--pp~~R---------------~~Ya~~l~~ll----~p~g~~lLi~l~ 157 (218)
T PF05724_consen 110 PPED-VGKFDLIYD---RTFLCAL--PPEMR---------------ERYAQQLASLL----KPGGRGLLITLE 157 (218)
T ss_dssp GGSC-HHSEEEEEE---CSSTTTS---GGGH---------------HHHHHHHHHCE----EEEEEEEEEEEE
T ss_pred Chhh-cCCceEEEE---ecccccC--CHHHH---------------HHHHHHHHHHh----CCCCcEEEEEEE
Confidence 5432 257999963 3322222 23322 12344445555 999996665544
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0099 Score=54.46 Aligned_cols=107 Identities=20% Similarity=0.315 Sum_probs=67.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccC-CchhhccCCHHHHHH
Q 010971 205 LIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK-DESVKTSKSLEDIQK 282 (496)
Q Consensus 205 ~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r-~p~~k~~~s~~~i~~ 282 (496)
+|+|+|+-+..++..+++++..|+.+ +.+++..-..+....+.+.+|.|+. .+|.+.. |..+- .
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iF-----NLGYLPggDk~i~---------T 66 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIF-----NLGYLPGGDKSIT---------T 66 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEE-----EESB-CTS-TTSB----------
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEE-----ECCcCCCCCCCCC---------c
Confidence 58999999999999999999999865 8888877677766554347888865 5676654 22221 1
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC---cCCHHHHHHHHHh
Q 010971 283 CSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV---TENEAVIDYALKK 330 (496)
Q Consensus 283 l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~---eENE~vV~~~L~~ 330 (496)
.+..=..-|..|+.+| +|||.|+...-.=++ +|-+.|.+| ++.
T Consensus 67 ~~~TTl~Al~~al~lL----~~gG~i~iv~Y~GH~gG~eE~~av~~~-~~~ 112 (140)
T PF06962_consen 67 KPETTLKALEAALELL----KPGGIITIVVYPGHPGGKEESEAVEEF-LAS 112 (140)
T ss_dssp -HHHHHHHHHHHHHHE----EEEEEEEEEE--STCHHHHHHHHHHHH-HHT
T ss_pred CcHHHHHHHHHHHHhh----ccCCEEEEEEeCCCCCCHHHHHHHHHH-HHh
Confidence 1222234578888887 999999887666676 355555554 444
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.011 Score=58.59 Aligned_cols=78 Identities=18% Similarity=0.134 Sum_probs=48.0
Q ss_pred hcCCCCCC-eEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCc
Q 010971 173 ALAPQEKE-RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 173 ~L~~~~g~-~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~f 250 (496)
.....++. .++|+|||+|-.+..+|.... .|+|.|+|..+|+.+...-.-.-+ ....+...++..+.. ..+++
T Consensus 27 ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g--~e~SV 101 (261)
T KOG3010|consen 27 IASRTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG--GEESV 101 (261)
T ss_pred HHhhCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCccccccccccccC--CCcce
Confidence 33444555 899999999955556666653 699999999999966543211111 112333333333321 24789
Q ss_pred CEEEE
Q 010971 251 DRVLL 255 (496)
Q Consensus 251 D~VLl 255 (496)
|.|++
T Consensus 102 DlI~~ 106 (261)
T KOG3010|consen 102 DLITA 106 (261)
T ss_pred eeehh
Confidence 99976
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0075 Score=58.38 Aligned_cols=118 Identities=16% Similarity=0.227 Sum_probs=79.7
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC-------CCeEEEEecCCCCC-ccccCCCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-------VTNTIVCNYDGNEL-PKVLGLNT 249 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g-------~~nv~v~~~D~~~~-~~~~~~~~ 249 (496)
..-.+.|+|||-||..+.|+-+.+. ..|++.++.-.-.+-.++++..++ ..|+.+...++..+ |..+..+.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPd-tLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgq 138 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPD-TLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQ 138 (249)
T ss_pred ccceEEeeccCccchhhhccccCcc-ceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcc
Confidence 4567999999999999999999865 689999998887777777777766 67888887777654 54443333
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.+.++. +-++|..+-.+....+. +..++..-.-+| ++||.|+++|-.
T Consensus 139 Lskmff---------~fpdpHfk~~khk~rii-----~~~l~~eyay~l----~~gg~~ytitDv 185 (249)
T KOG3115|consen 139 LSKMFF---------LFPDPHFKARKHKWRII-----TSTLLSEYAYVL----REGGILYTITDV 185 (249)
T ss_pred ccccee---------ecCChhHhhhhccceee-----chhHHHHHHhhh----hcCceEEEEeeH
Confidence 344333 22456655444433332 233454444444 999999887643
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.017 Score=59.62 Aligned_cols=104 Identities=29% Similarity=0.373 Sum_probs=72.0
Q ss_pred cCCCCCCeEeeccCCCchHHH-HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCC--CC----CccccC
Q 010971 174 LAPQEKERVIDMAAAPGGKTT-YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG--NE----LPKVLG 246 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~-~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~--~~----~~~~~~ 246 (496)
-.++.|.+||=+||||=|..+ ..|+.| +...|+..|+++.|++.+++ +|.+.+....... .. ....+.
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~-GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAM-GASDVVITDLVANRLELAKK----FGATVTDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHc-CCCcEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHHHHHHHhhcc
Confidence 357899999999999965555 455555 46799999999999998766 7887654443322 11 111122
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
...||.++- |||..+ -++.|+..+ ++||.+|..-|-
T Consensus 240 ~~~~d~~~d---CsG~~~-------------------------~~~aai~a~----r~gGt~vlvg~g 275 (354)
T KOG0024|consen 240 KKQPDVTFD---CSGAEV-------------------------TIRAAIKAT----RSGGTVVLVGMG 275 (354)
T ss_pred ccCCCeEEE---ccCchH-------------------------HHHHHHHHh----ccCCEEEEeccC
Confidence 245999885 888753 256667776 999998877654
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.02 Score=58.13 Aligned_cols=105 Identities=15% Similarity=0.157 Sum_probs=62.1
Q ss_pred CeEeeccCCCchHHHH-HHHHcCCCcEEEEEeCCHHHHHHHHHHHH-HcCCCe-EEEEecCCCCCccccCCCCcCEEEEC
Q 010971 180 ERVIDMAAAPGGKTTY-IAALMKNTGLIYANEMKASRLKSLTANLH-RMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~-lA~l~~~~g~V~A~D~s~~rl~~l~~nl~-r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.+|+=+|+||=-.|+. |++.......|+++|+++.+....++-+. .+|+.. +.+..+|+......+ ..||+|++-
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl--~~~DvV~lA 199 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL--KEYDVVFLA 199 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG------SEEEE-
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc--ccCCEEEEh
Confidence 4999999999777764 55444444679999999999999998888 667654 889999987765444 689999984
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
+- .|+ +.+ --.++|.+..+.+ +||..|+|=
T Consensus 200 al---Vg~-----------~~e-------~K~~Il~~l~~~m----~~ga~l~~R 229 (276)
T PF03059_consen 200 AL---VGM-----------DAE-------PKEEILEHLAKHM----APGARLVVR 229 (276)
T ss_dssp TT----S----------------------SHHHHHHHHHHHS-----TTSEEEEE
T ss_pred hh---ccc-----------ccc-------hHHHHHHHHHhhC----CCCcEEEEe
Confidence 42 110 000 1134788888876 999999874
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.024 Score=51.65 Aligned_cols=68 Identities=3% Similarity=-0.067 Sum_probs=48.0
Q ss_pred CCCCeEeeccCCCch-HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGG-KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGg-KT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
..+.+|||+|+|.|. .+..|+++ ...|+|+|+++.+++.++.+ + +.++..|.......+ ...+|.|..
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~---~~~v~dDlf~p~~~~-y~~a~liys 83 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G---LNAFVDDLFNPNLEI-YKNAKLIYS 83 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C---CeEEECcCCCCCHHH-HhcCCEEEE
Confidence 356899999999996 66566643 25899999999987766554 3 356677776543221 378999975
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.015 Score=59.82 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=80.3
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC--C----eEEEEecCCCC
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV--T----NTIVCNYDGNE 240 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~--~----nv~v~~~D~~~ 240 (496)
|+|.-..+ ++++.||||+||-||-.+-.-.. +-+.++++|+..--+..++.+...|.- . .+.++.+|...
T Consensus 108 s~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 108 SVLINLYT--KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHHh--ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 44544443 57999999999999976643322 346899999998888888877665421 1 24666777543
Q ss_pred C--cccc--CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 241 L--PKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 241 ~--~~~~--~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
- ...+ .+.+||+|=|-=- ..+.+.-..- -+.+|.++..+| +|||+++=+
T Consensus 184 ~~l~d~~e~~dp~fDivScQF~------------~HYaFetee~------ar~~l~Nva~~L----kpGG~FIgT----- 236 (389)
T KOG1975|consen 184 ERLMDLLEFKDPRFDIVSCQFA------------FHYAFETEES------ARIALRNVAKCL----KPGGVFIGT----- 236 (389)
T ss_pred hHHHHhccCCCCCcceeeeeee------------EeeeeccHHH------HHHHHHHHHhhc----CCCcEEEEe-----
Confidence 1 1111 2234888754111 1222322221 244688888886 999999653
Q ss_pred CcCCHHHHHHHHHhC
Q 010971 317 VTENEAVIDYALKKR 331 (496)
Q Consensus 317 ~eENE~vV~~~L~~~ 331 (496)
--|-.||-+=|+..
T Consensus 237 -iPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 237 -IPDSDVIIKRLRAG 250 (389)
T ss_pred -cCcHHHHHHHHHhc
Confidence 34566666666543
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.02 Score=55.32 Aligned_cols=113 Identities=17% Similarity=0.207 Sum_probs=64.1
Q ss_pred CCCeEeeccCCCchHHHHHHHHc----CC----CcEEEEEeCCHHHHHHHHHH--------------HHHc-----C---
Q 010971 178 EKERVIDMAAAPGGKTTYIAALM----KN----TGLIYANEMKASRLKSLTAN--------------LHRM-----G--- 227 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~----~~----~g~V~A~D~s~~rl~~l~~n--------------l~r~-----g--- 227 (496)
..-+||.+||++|-=.-.||-++ .. .-.|+|.|+|+..++.+++- ++++ |
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45689999999996443333322 21 23899999999999887652 2222 1
Q ss_pred -C-----CeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010971 228 -V-----TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDAN 301 (496)
Q Consensus 228 -~-----~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~ 301 (496)
+ ..|.+...|....+. ..+.||+|+| ||--+ .--...|.+++....+.|
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~--~~~~fD~I~C-----------RNVlI---------YF~~~~~~~vl~~l~~~L--- 165 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDP--PFGRFDLIFC-----------RNVLI---------YFDPETQQRVLRRLHRSL--- 165 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S--------EEEEEE------------SSGG---------GS-HHHHHHHHHHHGGGE---
T ss_pred eEChHHcCceEEEecccCCCCc--ccCCccEEEe-----------cCEEE---------EeCHHHHHHHHHHHHHHc---
Confidence 1 247888888877222 2378999998 22111 122356777888888876
Q ss_pred CCCCcEEEEEeCCCC
Q 010971 302 SKSGGYIVYSTCSIM 316 (496)
Q Consensus 302 lkpGG~LVYSTCSi~ 316 (496)
+|||+|+....-..
T Consensus 166 -~pgG~L~lG~sE~l 179 (196)
T PF01739_consen 166 -KPGGYLFLGHSESL 179 (196)
T ss_dssp -EEEEEEEE-TT--S
T ss_pred -CCCCEEEEecCccC
Confidence 99999998655443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.19 Score=41.81 Aligned_cols=108 Identities=17% Similarity=0.126 Sum_probs=67.1
Q ss_pred EeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCC--CccccCC-CCcCEEEECCC
Q 010971 182 VIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE--LPKVLGL-NTVDRVLLDAP 258 (496)
Q Consensus 182 VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~--~~~~~~~-~~fD~VLlDaP 258 (496)
|||++||+|..+ +++........++++|++...+..........+...+.+...|... ++ +.. ..||.+.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLP--FEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCC--CCCCCceeEEeeeee
Confidence 999999999987 5555543323788899999999885555443222215666666554 33 222 36888833222
Q ss_pred CCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcC
Q 010971 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE 319 (496)
Q Consensus 259 CSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eE 319 (496)
+... . ...++..+.+.+ +|+|.+++++.......
T Consensus 129 ~~~~-------------~----------~~~~~~~~~~~l----~~~g~~~~~~~~~~~~~ 162 (257)
T COG0500 129 LHLL-------------P----------PAKALRELLRVL----KPGGRLVLSDLLRDGLL 162 (257)
T ss_pred hhcC-------------C----------HHHHHHHHHHhc----CCCcEEEEEeccCCCCc
Confidence 1000 0 234566666665 99999999888866544
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.015 Score=57.54 Aligned_cols=75 Identities=17% Similarity=0.246 Sum_probs=50.8
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC-ccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~-~~~~~~~~fD~VLl 255 (496)
-+|..|||+||.+||+|-.+.+. +...|+|+|+....+..--++ ...-+.+-..|++.+ +..+ .+..|.|++
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~kLR~----d~rV~~~E~tN~r~l~~~~~-~~~~d~~v~ 150 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWKLRN----DPRVIVLERTNVRYLTPEDF-TEKPDLIVI 150 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHhHhc----CCcEEEEecCChhhCCHHHc-ccCCCeEEE
Confidence 36899999999999999988875 456999999987555432111 111233445566655 2223 247899999
Q ss_pred CCC
Q 010971 256 DAP 258 (496)
Q Consensus 256 DaP 258 (496)
|..
T Consensus 151 DvS 153 (245)
T COG1189 151 DVS 153 (245)
T ss_pred Eee
Confidence 976
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.033 Score=57.01 Aligned_cols=108 Identities=16% Similarity=0.175 Sum_probs=68.7
Q ss_pred CeEeeccCCCchHHHHHH----HHcCC---CcEEEEEeCCHHHHHHHHHHH--------------HHc---------C--
Q 010971 180 ERVIDMAAAPGGKTTYIA----ALMKN---TGLIYANEMKASRLKSLTANL--------------HRM---------G-- 227 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA----~l~~~---~g~V~A~D~s~~rl~~l~~nl--------------~r~---------g-- 227 (496)
-+||.++|++|-=.-.|| +.++. .-.|+|.|+|...++.+++.. .++ |
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 699999999996443333 33222 247999999999999888652 110 1
Q ss_pred -----C-CeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010971 228 -----V-TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDAN 301 (496)
Q Consensus 228 -----~-~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~ 301 (496)
+ ..|.+...|....+.. ..+.||+|+|- + + -+.--...|.+++....+.|
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~-~~~~fD~I~cR-----------N--v-------liyF~~~~~~~vl~~l~~~L--- 252 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWA-VPGPFDAIFCR-----------N--V-------MIYFDKTTQERILRRFVPLL--- 252 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCc-cCCCcceeeHh-----------h--H-------HhcCCHHHHHHHHHHHHHHh---
Confidence 1 1356666676553211 13689999871 0 0 01112245778888888887
Q ss_pred CCCCcEEEEEe
Q 010971 302 SKSGGYIVYST 312 (496)
Q Consensus 302 lkpGG~LVYST 312 (496)
+|||+|+...
T Consensus 253 -~pgG~L~lG~ 262 (287)
T PRK10611 253 -KPDGLLFAGH 262 (287)
T ss_pred -CCCcEEEEeC
Confidence 9999998754
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.22 Score=48.99 Aligned_cols=125 Identities=14% Similarity=0.169 Sum_probs=95.8
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
..+.+|.|+||--|-..+++..--. ...++|.|+++.-++.+..|+.+.+... +.+..+|+.. .......+|.|.+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~--~l~~~d~~d~ivI 91 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA--VLELEDEIDVIVI 91 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc--ccCccCCcCEEEE
Confidence 4577799999999999988876543 3589999999999999999999999865 7888889843 2223357999887
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEE
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKL 335 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~l 335 (496)
.|+| ..+-.+||....+.+ +.--++| +.|.-++.-+..+|..+++.+
T Consensus 92 ----AGMG--------------------G~lI~~ILee~~~~l----~~~~rlI-----LQPn~~~~~LR~~L~~~~~~I 138 (226)
T COG2384 92 ----AGMG--------------------GTLIREILEEGKEKL----KGVERLI-----LQPNIHTYELREWLSANSYEI 138 (226)
T ss_pred ----eCCc--------------------HHHHHHHHHHhhhhh----cCcceEE-----ECCCCCHHHHHHHHHhCCcee
Confidence 3555 234467888888876 3223555 578889999999999988887
Q ss_pred ee
Q 010971 336 VP 337 (496)
Q Consensus 336 v~ 337 (496)
+.
T Consensus 139 ~~ 140 (226)
T COG2384 139 KA 140 (226)
T ss_pred ee
Confidence 65
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.032 Score=50.68 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=49.6
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcC---CCcEEEEEeCCHHHHHHHHHHHHHcC--C-CeEEEEecC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMK---NTGLIYANEMKASRLKSLTANLHRMG--V-TNTIVCNYD 237 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~---~~g~V~A~D~s~~rl~~l~~nl~r~g--~-~nv~v~~~D 237 (496)
.+..+|+|+|||-|..+..++.++. ..-.|+++|.++..+..+....++++ . .+..+...+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGD 90 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccc
Confidence 6788999999999999999999553 34689999999999999999999988 4 334444443
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.014 Score=60.35 Aligned_cols=78 Identities=22% Similarity=0.235 Sum_probs=57.8
Q ss_pred EeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc-ccCCCCcCEEEECCCCC
Q 010971 182 VIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK-VLGLNTVDRVLLDAPCS 260 (496)
Q Consensus 182 VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~-~~~~~~fD~VLlDaPCS 260 (496)
|||++||.||.+.-+-+. +--.+.|+|+++..++..+.|... .+...|...+.. .+ ..+|+++.-+||.
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~------~~~~~Di~~~~~~~~--~~~dvl~gg~PCq 70 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN------KVPFGDITKISPSDI--PDFDILLGGFPCQ 70 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC------CCCccChhhhhhhhC--CCcCEEEecCCCc
Confidence 699999999999877654 233678999999999999988632 234466665532 12 4689999999999
Q ss_pred CCCcccCCc
Q 010971 261 GTGVISKDE 269 (496)
Q Consensus 261 g~G~i~r~p 269 (496)
+.-+..+..
T Consensus 71 ~fS~ag~~~ 79 (315)
T TIGR00675 71 PFSIAGKRK 79 (315)
T ss_pred ccchhcccC
Confidence 887665543
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.015 Score=56.54 Aligned_cols=100 Identities=16% Similarity=0.192 Sum_probs=54.8
Q ss_pred cccEEEeCCcchhHHHhc--CCCCCCeEeeccCCCchHHHHHHHHc---CCCcEEEEEeCCHHHHHHHHHHHHHcCCCeE
Q 010971 157 AGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALM---KNTGLIYANEMKASRLKSLTANLHRMGVTNT 231 (496)
Q Consensus 157 ~G~~~iQd~sS~l~v~~L--~~~~g~~VLDmcAgpGgKT~~lA~l~---~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv 231 (496)
.|.-++|.+.-+++...| ..+ -+.|+.+|.+-||.+...|.++ ++.|.|+++|++-.......-..+-+ ...|
T Consensus 10 ~G~pi~q~P~Dm~~~qeli~~~k-Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~-~~rI 87 (206)
T PF04989_consen 10 LGRPIIQYPQDMVAYQELIWELK-PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM-SPRI 87 (206)
T ss_dssp TTEEESS-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTE
T ss_pred CCeehhcCHHHHHHHHHHHHHhC-CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc-cCce
Confidence 366777877666554333 233 3699999999999999887655 46689999999654443332222333 2568
Q ss_pred EEEecCCCCCcccc------CCCCcCEEEECCC
Q 010971 232 IVCNYDGNELPKVL------GLNTVDRVLLDAP 258 (496)
Q Consensus 232 ~v~~~D~~~~~~~~------~~~~fD~VLlDaP 258 (496)
.++.+|........ .......|++|+-
T Consensus 88 ~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~ 120 (206)
T PF04989_consen 88 TFIQGDSIDPEIVDQVRELASPPHPVLVILDSS 120 (206)
T ss_dssp EEEES-SSSTHHHHTSGSS----SSEEEEESS-
T ss_pred EEEECCCCCHHHHHHHHHhhccCCceEEEECCC
Confidence 99999987653221 1234568888874
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.045 Score=56.20 Aligned_cols=147 Identities=14% Similarity=0.128 Sum_probs=80.5
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCe-EEEEec-CCCC-Ccccc-CCCCcCEE
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-GVTN-TIVCNY-DGNE-LPKVL-GLNTVDRV 253 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~-g~~n-v~v~~~-D~~~-~~~~~-~~~~fD~V 253 (496)
.-++||+|+|....=-.|+..+. .=.++|.|+++.-++.+++|++++ ++.+ |.+... +... +.... ....||..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 56899999999887666666554 358999999999999999999999 8865 666543 2222 22111 23589999
Q ss_pred EECCCCCCCC------cccCC------------chhhccCC-HHHHHHH--HHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 254 LLDAPCSGTG------VISKD------------ESVKTSKS-LEDIQKC--SYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 254 LlDaPCSg~G------~i~r~------------p~~k~~~s-~~~i~~l--~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+|+||-..+. .-++. |..-..-+ .+-+..- ...-.+++.....+ + ..+..-|
T Consensus 182 mCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rMI~ES~~~-----~--~~v~WfT 254 (299)
T PF05971_consen 182 MCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRMIKESLQL-----K--DQVRWFT 254 (299)
T ss_dssp EE-----SS--------------------------------TTTTHHHHTHHHHHHHHHHHHHHH-----G--GGEEEEE
T ss_pred ecCCccccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHHHHHHHHh-----C--CCcEEEe
Confidence 9999986553 11111 11111101 1111111 12335677777765 2 3455557
Q ss_pred CCCCCcCCHHHHHHHHHhCCc
Q 010971 313 CSIMVTENEAVIDYALKKRDV 333 (496)
Q Consensus 313 CSi~~eENE~vV~~~L~~~~~ 333 (496)
|=+...+|-.-+...|++.++
T Consensus 255 smvgKkssL~~l~~~L~~~~~ 275 (299)
T PF05971_consen 255 SMVGKKSSLKPLKKELKKLGA 275 (299)
T ss_dssp EEESSGGGHHHHHHHHHHTT-
T ss_pred ecccCcccHHHHHHHHHhcCC
Confidence 778889999999999988653
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.089 Score=52.97 Aligned_cols=137 Identities=18% Similarity=0.189 Sum_probs=78.1
Q ss_pred CCCCeEeeccCCCchHHHH-HHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC---------------------------
Q 010971 177 QEKERVIDMAAAPGGKTTY-IAALMKNTGLIYANEMKASRLKSLTANLHRMGV--------------------------- 228 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~-lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~--------------------------- 228 (496)
..|.++||+|||| |++ +..+...--.|+..|..+.-.+.++.-++.-|.
T Consensus 55 ~~g~~llDiGsGP---tiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l 131 (256)
T PF01234_consen 55 VKGETLLDIGSGP---TIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL 131 (256)
T ss_dssp S-EEEEEEES-TT-----GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred cCCCEEEEeCCCc---HHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence 3588999999999 333 122222234799999999888777665543221
Q ss_pred C-eE-EEEecCCCCCccccC----CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 010971 229 T-NT-IVCNYDGNELPKVLG----LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANS 302 (496)
Q Consensus 229 ~-nv-~v~~~D~~~~~~~~~----~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~l 302 (496)
. .| .|+..|....+...+ +..||.|+. ..-.+.+..-....+..|.+...+|
T Consensus 132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s------------------~fcLE~a~~d~~~y~~al~ni~~lL---- 189 (256)
T PF01234_consen 132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVIS------------------SFCLESACKDLDEYRRALRNISSLL---- 189 (256)
T ss_dssp HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEE------------------ESSHHHH-SSHHHHHHHHHHHHTTE----
T ss_pred HHhhceEEEeeccCCCCCCccccCccchhhhhh------------------hHHHHHHcCCHHHHHHHHHHHHHHc----
Confidence 0 12 355667665433221 134888865 1222333323334556677777776
Q ss_pred CCCcEEEEEeCC------C------CCcCCHHHHHHHHHhCCcEEeec
Q 010971 303 KSGGYIVYSTCS------I------MVTENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 303 kpGG~LVYSTCS------i------~~eENE~vV~~~L~~~~~~lv~~ 338 (496)
||||+|+....- + ..-=|++.|..+|++.++.++..
T Consensus 190 kpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~ 237 (256)
T PF01234_consen 190 KPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDL 237 (256)
T ss_dssp EEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEE
T ss_pred CCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEec
Confidence 999999976321 0 01237899999999988877765
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.11 Score=53.89 Aligned_cols=74 Identities=16% Similarity=0.187 Sum_probs=55.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.|..|||+|||+|-.+...|+. +...|+|++.|. +.+.++..++.+.+. .|.++.+...++. + ++..|+|+..
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdie--L-PEk~DviISE 250 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIE--L-PEKVDVIISE 250 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh--CcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCcccccc--C-chhccEEEec
Confidence 4778999999999999877775 457999999875 556666667666664 4777777665543 2 2689999987
Q ss_pred C
Q 010971 257 A 257 (496)
Q Consensus 257 a 257 (496)
|
T Consensus 251 P 251 (517)
T KOG1500|consen 251 P 251 (517)
T ss_pred c
Confidence 6
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.22 Score=50.33 Aligned_cols=118 Identities=12% Similarity=0.045 Sum_probs=73.7
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc--CCC--eEEEEecCCCCCccccC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--GVT--NTIVCNYDGNELPKVLG 246 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~--g~~--nv~v~~~D~~~~~~~~~ 246 (496)
+++..+. -.+||=+|.|-||..-.+... ...|+.+|+|+.-++.+++-+-.+ +++ ++.++.. +.. ..
T Consensus 66 pl~~h~~-pk~VLIiGGGDGg~~REvLkh---~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~-~~ 136 (262)
T PRK00536 66 GGCTKKE-LKEVLIVDGFDLELAHQLFKY---DTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLD-LD 136 (262)
T ss_pred HHhhCCC-CCeEEEEcCCchHHHHHHHCc---CCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhh-cc
Confidence 3344444 379999999999988776655 249999999999999999855443 233 3555541 211 11
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~ 326 (496)
.+.||+|++|.. .++ .....+.+. |+|||.+|.=+-|... ...++..
T Consensus 137 ~~~fDVIIvDs~----------------~~~-----------~fy~~~~~~----L~~~Gi~v~Qs~sp~~--~~~~~~~ 183 (262)
T PRK00536 137 IKKYDLIICLQE----------------PDI-----------HKIDGLKRM----LKEDGVFISVAKHPLL--EHVSMQN 183 (262)
T ss_pred CCcCCEEEEcCC----------------CCh-----------HHHHHHHHh----cCCCcEEEECCCCccc--CHHHHHH
Confidence 267999999942 111 112333344 4999999885555543 2444454
Q ss_pred HHHh
Q 010971 327 ALKK 330 (496)
Q Consensus 327 ~L~~ 330 (496)
+.+.
T Consensus 184 i~~~ 187 (262)
T PRK00536 184 ALKN 187 (262)
T ss_pred HHHH
Confidence 4443
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.072 Score=53.99 Aligned_cols=107 Identities=17% Similarity=0.176 Sum_probs=67.9
Q ss_pred CCeEeeccCCCch----HHHHHHHHcCC----CcEEEEEeCCHHHHHHHHHH------H---------HHc------C--
Q 010971 179 KERVIDMAAAPGG----KTTYIAALMKN----TGLIYANEMKASRLKSLTAN------L---------HRM------G-- 227 (496)
Q Consensus 179 g~~VLDmcAgpGg----KT~~lA~l~~~----~g~V~A~D~s~~rl~~l~~n------l---------~r~------g-- 227 (496)
--+||-++|++|- .++.|.+.++. .-.|+|.|+|...|+.++.- + .++ |
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 3578888898884 44445555542 45899999999999887642 1 111 1
Q ss_pred -----C-CeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010971 228 -----V-TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDAN 301 (496)
Q Consensus 228 -----~-~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~ 301 (496)
+ ..|.+...|...-+. ..+.||+|+| ||--+ .--...|.+|+..-...|
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~--~~~~fD~IfC-----------RNVLI---------YFd~~~q~~il~~f~~~L--- 231 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP--FLGKFDLIFC-----------RNVLI---------YFDEETQERILRRFADSL--- 231 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc--ccCCCCEEEE-----------cceEE---------eeCHHHHHHHHHHHHHHh---
Confidence 0 124455555443221 2367999998 22222 223467899999988887
Q ss_pred CCCCcEEEEE
Q 010971 302 SKSGGYIVYS 311 (496)
Q Consensus 302 lkpGG~LVYS 311 (496)
+|||+|+.-
T Consensus 232 -~~gG~LflG 240 (268)
T COG1352 232 -KPGGLLFLG 240 (268)
T ss_pred -CCCCEEEEc
Confidence 999999864
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.031 Score=58.01 Aligned_cols=83 Identities=25% Similarity=0.341 Sum_probs=60.4
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc-ccCCCCcCEEEECC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK-VLGLNTVDRVLLDA 257 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~-~~~~~~fD~VLlDa 257 (496)
..+|+|+|||.||..+-+.+. +--.+.|+|+++..++....|... ..+...|...+.. .+....+|+|+--+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred CceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhccccCCCEEEeCC
Confidence 357999999999999766654 234789999999999999988864 2344455544321 11111799999999
Q ss_pred CCCCCCcccCC
Q 010971 258 PCSGTGVISKD 268 (496)
Q Consensus 258 PCSg~G~i~r~ 268 (496)
||-+.-+..+.
T Consensus 76 PCQ~FS~aG~r 86 (328)
T COG0270 76 PCQDFSIAGKR 86 (328)
T ss_pred CCcchhhcCcc
Confidence 99988777665
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.072 Score=52.24 Aligned_cols=133 Identities=15% Similarity=0.069 Sum_probs=75.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
...+.||+|||-|-.|-++.. +---.|-.+|..+.-+..+++.+...+..-..+.+.-..++... ..+||+|-+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl--~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~--~~~YDlIW~-- 128 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLL--PVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE--EGKYDLIWI-- 128 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCC--CC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG------TT-EEEEEE--
T ss_pred CcceEEecccccchhHHHHHH--HhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC--CCcEeEEEe--
Confidence 467999999999999976532 22358999999999999998766552222344555555554221 268999976
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe-CCCCC-----cC------CHHHHH
Q 010971 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST-CSIMV-----TE------NEAVID 325 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST-CSi~~-----eE------NE~vV~ 325 (496)
..+....|.+++ ...|.++...| +|||.||.=. ||-.. +| ......
T Consensus 129 -----------QW~lghLTD~dl-------v~fL~RCk~~L----~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~ 186 (218)
T PF05891_consen 129 -----------QWCLGHLTDEDL-------VAFLKRCKQAL----KPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFR 186 (218)
T ss_dssp -----------ES-GGGS-HHHH-------HHHHHHHHHHE----EEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHH
T ss_pred -----------hHhhccCCHHHH-------HHHHHHHHHhC----cCCcEEEEEecCCCCCCcccCCccCeeecCHHHHH
Confidence 111123344554 34577787776 9999998531 11111 11 234555
Q ss_pred HHHHhCCcEEeec
Q 010971 326 YALKKRDVKLVPC 338 (496)
Q Consensus 326 ~~L~~~~~~lv~~ 338 (496)
.+.++.+++++..
T Consensus 187 ~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 187 ELFKQAGLRLVKE 199 (218)
T ss_dssp HHHHHCT-EEEEE
T ss_pred HHHHHcCCEEEEe
Confidence 5666667777654
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.021 Score=58.30 Aligned_cols=74 Identities=20% Similarity=0.228 Sum_probs=58.6
Q ss_pred CCCeEeeccCCCchHHH-HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEEE
Q 010971 178 EKERVIDMAAAPGGKTT-YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~-~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
.|+.|+||.||-|.+|+ .+-.. +...|+|+|.++..++.|+.+++.+++.. ..++.+|-+..- . ....|+|.+
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a--gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~-~--~~~AdrVnL 268 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA--GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK-P--RLRADRVNL 268 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc--CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC-c--cccchheee
Confidence 47999999999999998 44433 45699999999999999999999998754 456677776542 2 368999977
Q ss_pred C
Q 010971 256 D 256 (496)
Q Consensus 256 D 256 (496)
-
T Consensus 269 G 269 (351)
T KOG1227|consen 269 G 269 (351)
T ss_pred c
Confidence 3
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.08 Score=57.71 Aligned_cols=84 Identities=20% Similarity=0.226 Sum_probs=57.6
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc--------------
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-------------- 244 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~-------------- 244 (496)
.-+++|+|||.||.++-+-+. +--.|.|+|+++...+....|... ..+..+.+.|.+.+...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a--G~~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI--GGQCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc--CCEEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCccccccccchhhhhhhh
Confidence 569999999999999877543 223789999999999999988521 11223334455444210
Q ss_pred -cCCCCcCEEEECCCCCCCCccc
Q 010971 245 -LGLNTVDRVLLDAPCSGTGVIS 266 (496)
Q Consensus 245 -~~~~~fD~VLlDaPCSg~G~i~ 266 (496)
.....+|+++.-+||-+.-+..
T Consensus 164 ~~~~p~~DvL~gGpPCQ~FS~AG 186 (467)
T PRK10458 164 RQHIPDHDVLLAGFPCQPFSLAG 186 (467)
T ss_pred hccCCCCCEEEEcCCCCccchhc
Confidence 0013689999999998876554
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.012 Score=62.54 Aligned_cols=64 Identities=25% Similarity=0.239 Sum_probs=55.8
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEecCCCCCc
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT--NTIVCNYDGNELP 242 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~--nv~v~~~D~~~~~ 242 (496)
.++|+.|-|+|||-|-.++-++.. .+.|+|||.++..++.|..|+..+-+. +|.+.+.||..|-
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 468999999999999998876654 389999999999999999999988774 4899999998764
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.16 Score=53.15 Aligned_cols=95 Identities=17% Similarity=0.232 Sum_probs=65.5
Q ss_pred CCCCCCeEeeccCC-CchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEE
Q 010971 175 APQEKERVIDMAAA-PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 175 ~~~~g~~VLDmcAg-pGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
.+.||++|+=.|+| -|..++++|..|. ..|+|+|.+++.++.+ +++|.+.+.... |........ +.||.|
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a----~~lGAd~~i~~~-~~~~~~~~~--~~~d~i 233 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELA----KKLGADHVINSS-DSDALEAVK--EIADAI 233 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHH----HHhCCcEEEEcC-CchhhHHhH--hhCcEE
Confidence 46899999988887 3345566666664 7999999999988655 567776654433 444443332 349999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
|.=+| . ..+..++++| ++||++|..
T Consensus 234 i~tv~-~----------------------------~~~~~~l~~l----~~~G~~v~v 258 (339)
T COG1064 234 IDTVG-P----------------------------ATLEPSLKAL----RRGGTLVLV 258 (339)
T ss_pred EECCC-h----------------------------hhHHHHHHHH----hcCCEEEEE
Confidence 98544 1 1267777876 999999864
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.13 Score=52.14 Aligned_cols=48 Identities=13% Similarity=0.064 Sum_probs=39.4
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM 226 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~ 226 (496)
..+|||+|||||.-+..+.+.++....++++|.|+..++..+.-++..
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 358999999999877777777775568999999999998877766544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.14 Score=46.40 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=54.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.|.+|+|+||+-|..+++.+- .+...|+|++.++...+.+++|++-+.+-+-.+... .++..+ +.||+..+|
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l--~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~---eW~~~Y--~~~Di~~iD 99 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLL--RGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG---EWNGEY--EDVDIFVMD 99 (156)
T ss_pred cCCEEEEecCCccchhhHHhh--cCccEEEEeccCHHHHHHHHHHhhhheeeeceeecc---cccccC--CCcceEEEE
Confidence 488999999999999988764 356799999999999999999998875422111111 344334 789999998
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.22 Score=48.19 Aligned_cols=143 Identities=17% Similarity=0.085 Sum_probs=77.9
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHH-----H-HHHHHHHHHcCCCeEEEEecCCCCCccccCC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASR-----L-KSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~r-----l-~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~ 247 (496)
..+++|.+|+|+--|.|.+|-.++-.++.+|.|+++=..... - ..+..-...-+..|+.++..+...++ ..
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~---~p 120 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG---AP 120 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC---CC
Confidence 357899999999999999999999999999999987443321 1 22222222233344444333322221 11
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC----------
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV---------- 317 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~---------- 317 (496)
+..|.+.. ..-.+- .+...+. ...--+......+.| ||||.++.-.-...+
T Consensus 121 q~~d~~~~-----------~~~yhd--mh~k~i~--~~~A~~vna~vf~~L----KPGGv~~V~dH~a~pG~~~~dt~~~ 181 (238)
T COG4798 121 QKLDLVPT-----------AQNYHD--MHNKNIH--PATAAKVNAAVFKAL----KPGGVYLVEDHRADPGSGLSDTITL 181 (238)
T ss_pred Cccccccc-----------chhhhh--hhccccC--cchHHHHHHHHHHhc----CCCcEEEEEeccccCCCChhhhhhh
Confidence 22333321 000000 0000000 111123345555665 999998876544333
Q ss_pred -cCCHHHHHHHHHhCCcEEeec
Q 010971 318 -TENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 318 -eENE~vV~~~L~~~~~~lv~~ 338 (496)
--++++|.......+|+|.--
T Consensus 182 ~ri~~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 182 HRIDPAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred cccChHHHHHHHHhhcceeeee
Confidence 236677777777778887643
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.34 Score=47.67 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=73.8
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
..|.+||.+|=|-|-..+.+.+.-+ ..-+-++.++.-++.++.+.=+- -.||+++.+-=.+....+.++.||-|+-|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~~gw~e-k~nViil~g~WeDvl~~L~d~~FDGI~yD 176 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRDWGWRE-KENVIILEGRWEDVLNTLPDKHFDGIYYD 176 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHhccccc-ccceEEEecchHhhhccccccCcceeEee
Confidence 5799999999999999988876532 46677899999888776654221 24677665422222222345789999998
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCH
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE 321 (496)
+= .-.-+++ +.+-.++.++| ||+|.+-| |-.+..-|.
T Consensus 177 Ty---------------~e~yEdl-------~~~hqh~~rLL----kP~gv~Sy--fNg~~~~~~ 213 (271)
T KOG1709|consen 177 TY---------------SELYEDL-------RHFHQHVVRLL----KPEGVFSY--FNGLGADNL 213 (271)
T ss_pred ch---------------hhHHHHH-------HHHHHHHhhhc----CCCceEEE--ecCcccchh
Confidence 52 1112333 33344777776 99998777 555544443
|
|
| >KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.022 Score=55.75 Aligned_cols=93 Identities=19% Similarity=0.135 Sum_probs=63.7
Q ss_pred HHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc-----
Q 010971 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV----- 244 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~----- 244 (496)
++..|.|.+|...+||.-|.||.|..|.+.-. ..+++|.|.+|-.-+.+......+=-..+..+-+.+..++..
T Consensus 35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk~s-e~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~~l~~~~g 113 (303)
T KOG2782|consen 35 VLDILSPVRGRSFVDMTFGAGGHTSSILQKHS-ELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIKSLIADTG 113 (303)
T ss_pred HHHHcCCCCCceEEEEeccCCcchHHHHHhCc-HhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHHHHHHHhC
Confidence 35678899999999999999999999998764 468999999998776665555322111111111222222221
Q ss_pred cCCCCcCEEEECCCCCCCC
Q 010971 245 LGLNTVDRVLLDAPCSGTG 263 (496)
Q Consensus 245 ~~~~~fD~VLlDaPCSg~G 263 (496)
+.+.+||-||.|--||..-
T Consensus 114 l~~~~vDGiLmDlGcSSMQ 132 (303)
T KOG2782|consen 114 LLDVGVDGILMDLGCSSMQ 132 (303)
T ss_pred CCcCCcceEEeecCccccc
Confidence 1247899999999999764
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.34 Score=49.20 Aligned_cols=81 Identities=17% Similarity=0.183 Sum_probs=61.8
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC-ccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~-~~~~~~~~fD~VLl 255 (496)
..|..|+=|| ---.|...+++.+-.-.|..+|++..-+.-...-++.+|+.|+..+.+|.+.. |..+ ...||+.+.
T Consensus 151 L~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~-~~kFDvfiT 227 (354)
T COG1568 151 LEGKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDL-KRKFDVFIT 227 (354)
T ss_pred cCCCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHH-HhhCCeeec
Confidence 3577788777 33333333344443458999999999999999999999999999999999864 5544 378999999
Q ss_pred CCCCC
Q 010971 256 DAPCS 260 (496)
Q Consensus 256 DaPCS 260 (496)
|||-+
T Consensus 228 DPpeT 232 (354)
T COG1568 228 DPPET 232 (354)
T ss_pred Cchhh
Confidence 99944
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.11 Score=52.88 Aligned_cols=75 Identities=15% Similarity=0.028 Sum_probs=45.2
Q ss_pred CeEEEEecCCCCCccccCCCCcCEEEECCCCCC-CCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcE
Q 010971 229 TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSG-TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307 (496)
Q Consensus 229 ~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg-~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~ 307 (496)
.+..++++|+..+...++.++||+|++|||+-. .+.....+ .+... ........+|..+.++| +|||.
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~----~~~~~---~~~~~l~~~l~~~~rvL----K~~G~ 75 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIE----AWKED---LFIDWLYEWIDECHRVL----KKQGT 75 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccc----cccHH---HHHHHHHHHHHHHHHHh----CCCcE
Confidence 345678899887655555689999999999843 11111111 12211 22222355677777765 99999
Q ss_pred EEEEeCCC
Q 010971 308 IVYSTCSI 315 (496)
Q Consensus 308 LVYSTCSi 315 (496)
|+.. |+.
T Consensus 76 i~i~-~~~ 82 (284)
T PRK11524 76 MYIM-NST 82 (284)
T ss_pred EEEE-cCc
Confidence 9764 543
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.15 Score=53.31 Aligned_cols=102 Identities=18% Similarity=0.242 Sum_probs=64.4
Q ss_pred CCCCeEeeccCCCchHH-HHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecC-CCC-CccccCCCCcCEE
Q 010971 177 QEKERVIDMAAAPGGKT-TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD-GNE-LPKVLGLNTVDRV 253 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT-~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D-~~~-~~~~~~~~~fD~V 253 (496)
.++.+|+=+||||=|.. ..++.++ +...|+++|.++.|++.+++.. |...+.....+ ... .........||.|
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~~~---g~~~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKEAG---GADVVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHHhC---CCeEeecCccccHHHHHHHHhCCCCCCEE
Confidence 45559999999995554 5555555 4579999999999999876532 33222111111 100 0111112379999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
+- |||+. ..+..|++++ +|||.+++..-.
T Consensus 243 ie---~~G~~-------------------------~~~~~ai~~~----r~gG~v~~vGv~ 271 (350)
T COG1063 243 IE---AVGSP-------------------------PALDQALEAL----RPGGTVVVVGVY 271 (350)
T ss_pred EE---CCCCH-------------------------HHHHHHHHHh----cCCCEEEEEecc
Confidence 87 87732 1477888887 999999986444
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.41 Score=54.34 Aligned_cols=138 Identities=17% Similarity=0.144 Sum_probs=84.2
Q ss_pred hhHHHhcC-CCCCCeEeeccCCCchHHHHHHHHcC-------C----CcEEEEEeCCH---HHHHHHH----------HH
Q 010971 168 FLPVMALA-PQEKERVIDMAAAPGGKTTYIAALMK-------N----TGLIYANEMKA---SRLKSLT----------AN 222 (496)
Q Consensus 168 ~l~v~~L~-~~~g~~VLDmcAgpGgKT~~lA~l~~-------~----~g~V~A~D~s~---~rl~~l~----------~n 222 (496)
.|+..... ....-+|||+|=|+|.-.+...+... + .-.++++|..+ ..+..+- +.
T Consensus 46 ~l~~r~~~~~~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~ 125 (662)
T PRK01747 46 GLPERWAEHPRRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQ 125 (662)
T ss_pred CHHHHHhcCCCCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHH
Confidence 34444432 23346899999999998887776651 1 23789999755 3332221 11
Q ss_pred HH-H-----cCCC---------eEEEEecCCCCCccccCCCCcCEEEECC--CCCCCCcccCCchhhccCCHHHHHHHHH
Q 010971 223 LH-R-----MGVT---------NTIVCNYDGNELPKVLGLNTVDRVLLDA--PCSGTGVISKDESVKTSKSLEDIQKCSY 285 (496)
Q Consensus 223 l~-r-----~g~~---------nv~v~~~D~~~~~~~~~~~~fD~VLlDa--PCSg~G~i~r~p~~k~~~s~~~i~~l~~ 285 (496)
+. . .|+. +..+..+|++..-..+. ..||.|++|+ | .++|++ |+.
T Consensus 126 l~~~~~~~~~g~~~~~~~~~~~~l~l~~gd~~~~~~~~~-~~~d~~~lD~FsP-------~~np~~---W~~-------- 186 (662)
T PRK01747 126 LQAQWPLLLPGCHRLLFDDGRVTLDLWFGDANELLPQLD-ARADAWFLDGFAP-------AKNPDM---WSP-------- 186 (662)
T ss_pred HHHhCCccCCCceEEEecCCcEEEEEEecCHHHHHHhcc-ccccEEEeCCCCC-------ccChhh---ccH--------
Confidence 11 1 1331 23456678765432221 4699999995 6 577887 343
Q ss_pred HHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEEeec
Q 010971 286 LQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 286 lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~lv~~ 338 (496)
+++....+++ +|||+++-.||+ ..|...|...+|++...
T Consensus 187 ---~~~~~l~~~~----~~~~~~~t~t~a-------~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 187 ---NLFNALARLA----RPGATLATFTSA-------GFVRRGLQEAGFTVRKV 225 (662)
T ss_pred ---HHHHHHHHHh----CCCCEEEEeehH-------HHHHHHHHHcCCeeeec
Confidence 3455555554 999999865554 46788888888877643
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.6 Score=48.08 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=59.3
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCC--cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc-CCCCcC
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNT--GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-GLNTVD 251 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~--g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~-~~~~fD 251 (496)
...+|++||=.+| |+.++.+.++.... ..|++.|.++.|++.+ +.+|.+.+. ..+-..+.... ..+.||
T Consensus 166 ~~~~g~~VlV~G~--G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a----~~lGa~~vi--~~~~~~~~~~~~~~g~~D 237 (343)
T PRK09880 166 GDLQGKRVFVSGV--GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLA----REMGADKLV--NPQNDDLDHYKAEKGYFD 237 (343)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHH----HHcCCcEEe--cCCcccHHHHhccCCCCC
Confidence 3557999998765 55555444433322 3699999999998765 457876432 21111111111 113599
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.||- |+|.. ..+..+++++ ++||++|....+
T Consensus 238 ~vid---~~G~~-------------------------~~~~~~~~~l----~~~G~iv~~G~~ 268 (343)
T PRK09880 238 VSFE---VSGHP-------------------------SSINTCLEVT----RAKGVMVQVGMG 268 (343)
T ss_pred EEEE---CCCCH-------------------------HHHHHHHHHh----hcCCEEEEEccC
Confidence 8874 55531 1356677776 999999876543
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=92.83 E-value=1.1 Score=42.24 Aligned_cols=126 Identities=24% Similarity=0.277 Sum_probs=73.0
Q ss_pred EEEeCCcchhHHHhcC-CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCC
Q 010971 160 YMLQSASSFLPVMALA-PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG 238 (496)
Q Consensus 160 ~~iQd~sS~l~v~~L~-~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~ 238 (496)
|+-.+-+..++-.++. ..++.+|+=+||=+--..+ .........++-.|.|.. .+.+|-+ .++.+|.
T Consensus 6 wYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l--~~~~~~~~~~~Lle~D~R--------F~~~~~~--~F~fyD~ 73 (162)
T PF10237_consen 6 WYSDETAEFLARELLDGALDDTRIACLSTPSLYEAL--KKESKPRIQSFLLEYDRR--------FEQFGGD--EFVFYDY 73 (162)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHH--HhhcCCCccEEEEeecch--------HHhcCCc--ceEECCC
Confidence 3333333344444444 3456789888765443332 222234457888898863 3334433 4567776
Q ss_pred CC---CccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 239 NE---LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 239 ~~---~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.. ++..+ .+.||+|++|||- .+.+-... ...+++.| +++++.|+.+
T Consensus 74 ~~p~~~~~~l-~~~~d~vv~DPPF---------------l~~ec~~k--------~a~ti~~L---~k~~~kii~~---- 122 (162)
T PF10237_consen 74 NEPEELPEEL-KGKFDVVVIDPPF---------------LSEECLTK--------TAETIRLL---LKPGGKIILC---- 122 (162)
T ss_pred CChhhhhhhc-CCCceEEEECCCC---------------CCHHHHHH--------HHHHHHHH---hCccceEEEe----
Confidence 54 34334 3789999999993 12222111 23344444 4889999884
Q ss_pred CCcCCHHHHHHHH
Q 010971 316 MVTENEAVIDYAL 328 (496)
Q Consensus 316 ~~eENE~vV~~~L 328 (496)
++++++..+...|
T Consensus 123 Tg~~~~~~~~~ll 135 (162)
T PF10237_consen 123 TGEEMEELIKKLL 135 (162)
T ss_pred cHHHHHHHHHHHh
Confidence 4578888888877
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.78 E-value=1 Score=46.35 Aligned_cols=93 Identities=16% Similarity=0.187 Sum_probs=56.9
Q ss_pred cCCCCCCeEeeccCCCch-HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE
Q 010971 174 LAPQEKERVIDMAAAPGG-KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGg-KT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
..+++|++||=.++|+-| .+.++|..++ ..|++.+.++.+++. ++.+|.+.+... .+ .. ...+|.
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~----a~~~Ga~~vi~~-~~---~~----~~~~d~ 226 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRL----ALALGAASAGGA-YD---TP----PEPLDA 226 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHH----HHHhCCceeccc-cc---cC----cccceE
Confidence 457889999988864332 2234444442 368999999988654 456888654211 11 11 145887
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
++. |++.| ..+..+++++ ++||++|..-
T Consensus 227 ~i~---~~~~~-------------------------~~~~~~~~~l----~~~G~~v~~G 254 (329)
T TIGR02822 227 AIL---FAPAG-------------------------GLVPPALEAL----DRGGVLAVAG 254 (329)
T ss_pred EEE---CCCcH-------------------------HHHHHHHHhh----CCCcEEEEEe
Confidence 765 22222 1366777876 9999987643
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.73 Score=50.87 Aligned_cols=178 Identities=13% Similarity=0.141 Sum_probs=97.3
Q ss_pred HcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcc---CCCCcCCcccEEEecCCCCCCCCcccccccEEEeCCcchhHH--
Q 010971 97 SFEKPRPICLRTNTLKTRRRDLADVLINRGVNL---DPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPV-- 171 (496)
Q Consensus 97 a~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~---~p~~~~~~~gl~v~~~~~~i~~~~~~~~G~~~iQd~sS~l~v-- 171 (496)
.+....-+.-.+++.. -.++.+.|.++|+.+ +.+..|+.. ...++-.+-.-..||--++.++..+..
T Consensus 82 ~l~~g~~li~~l~p~~--~~~l~~~l~~~~it~ia~e~vpr~sra------q~~d~lssma~IAGy~Av~~aa~~~~~~~ 153 (509)
T PRK09424 82 LLREGATLVSFIWPAQ--NPELLEKLAARGVTVLAMDAVPRISRA------QSLDALSSMANIAGYRAVIEAAHEFGRFF 153 (509)
T ss_pred hcCCCCEEEEEeCccc--CHHHHHHHHHcCCEEEEeecccccccC------CCcccccchhhhhHHHHHHHHHHHhcccC
Confidence 3333333444455532 367999999998864 333222221 111222222334555444444332221
Q ss_pred ----HhcCCCCCCeEeeccCCCchHH-HHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCC--------
Q 010971 172 ----MALAPQEKERVIDMAAAPGGKT-TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG-------- 238 (496)
Q Consensus 172 ----~~L~~~~g~~VLDmcAgpGgKT-~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~-------- 238 (496)
-++...++.+||=+|||+=|.. +..|..++ ..|+++|.++.|++.++ .+|.+.+.+-..+.
T Consensus 154 ~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~ae----slGA~~v~i~~~e~~~~~~gya 227 (509)
T PRK09424 154 TGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVE----SMGAEFLELDFEEEGGSGDGYA 227 (509)
T ss_pred CCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH----HcCCeEEEeccccccccccchh
Confidence 1233568999999999986654 45566654 37999999999988654 47876443311110
Q ss_pred CCCccc--------cC--CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEE
Q 010971 239 NELPKV--------LG--LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI 308 (496)
Q Consensus 239 ~~~~~~--------~~--~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~L 308 (496)
..+... +. ...+|+|+. |+|.- -++.|. -++..+++.+ +|||.|
T Consensus 228 ~~~s~~~~~~~~~~~~~~~~gaDVVIe---tag~p-g~~aP~------------------lit~~~v~~m----kpGgvI 281 (509)
T PRK09424 228 KVMSEEFIKAEMALFAEQAKEVDIIIT---TALIP-GKPAPK------------------LITAEMVASM----KPGSVI 281 (509)
T ss_pred hhcchhHHHHHHHHHHhccCCCCEEEE---CCCCC-cccCcc------------------hHHHHHHHhc----CCCCEE
Confidence 011000 00 146999986 44320 001111 1247778876 999999
Q ss_pred EEEeCC
Q 010971 309 VYSTCS 314 (496)
Q Consensus 309 VYSTCS 314 (496)
|...|.
T Consensus 282 Vdvg~~ 287 (509)
T PRK09424 282 VDLAAE 287 (509)
T ss_pred EEEccC
Confidence 998885
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.66 E-value=1.1 Score=46.92 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=74.0
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCCC
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPC 259 (496)
...+|+|+|.|..+-++....+ .|-+++.+..-+-....++. -|+. .+-+|+.. . . ..-|+|++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~gV~---~v~gdmfq--~-~--P~~daI~m---- 242 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PGVE---HVAGDMFQ--D-T--PKGDAIWM---- 242 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CCcc---eecccccc--c-C--CCcCeEEE----
Confidence 7899999999999999888664 38888888888877777776 6644 34455532 1 1 24568876
Q ss_pred CCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 260 Sg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
..+...|+.++. .++|.++++.| +|||.|+...|-+.
T Consensus 243 ---------kWiLhdwtDedc-------vkiLknC~~sL----~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 243 ---------KWILHDWTDEDC-------VKILKNCKKSL----PPGGKIIVVENVTP 279 (342)
T ss_pred ---------EeecccCChHHH-------HHHHHHHHHhC----CCCCEEEEEeccCC
Confidence 122235777776 56899999997 99999999888554
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.5 Score=41.20 Aligned_cols=87 Identities=23% Similarity=0.389 Sum_probs=59.6
Q ss_pred CchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc----cccCCCCcCEEEECCCCCCCCc
Q 010971 189 PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGLNTVDRVLLDAPCSGTGV 264 (496)
Q Consensus 189 pGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~----~~~~~~~fD~VLlDaPCSg~G~ 264 (496)
-|..++++|..++ ..|++.|.++.|++.+ +++|...+ +..+..++. .......+|.||- |+|.+
T Consensus 2 vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~----~~~Ga~~~--~~~~~~~~~~~i~~~~~~~~~d~vid---~~g~~- 69 (130)
T PF00107_consen 2 VGLMAIQLAKAMG--AKVIATDRSEEKLELA----KELGADHV--IDYSDDDFVEQIRELTGGRGVDVVID---CVGSG- 69 (130)
T ss_dssp HHHHHHHHHHHTT--SEEEEEESSHHHHHHH----HHTTESEE--EETTTSSHHHHHHHHTTTSSEEEEEE---SSSSH-
T ss_pred hHHHHHHHHHHcC--CEEEEEECCHHHHHHH----Hhhccccc--ccccccccccccccccccccceEEEE---ecCcH-
Confidence 4778888998876 8999999999998765 56775443 344333221 1122247999986 66643
Q ss_pred ccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 265 i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
..+..++.++ ++||++|.....-
T Consensus 70 ------------------------~~~~~~~~~l----~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 70 ------------------------DTLQEAIKLL----RPGGRIVVVGVYG 92 (130)
T ss_dssp ------------------------HHHHHHHHHE----EEEEEEEEESSTS
T ss_pred ------------------------HHHHHHHHHh----ccCCEEEEEEccC
Confidence 2477888887 9999998755443
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.47 Score=46.81 Aligned_cols=92 Identities=15% Similarity=0.051 Sum_probs=51.3
Q ss_pred EEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 232 IVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 232 ~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.+.++|+.++-..++++++|.|+.|||+- .|.-..... ..... .........+.++.+.| ||||.++ +
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~-i~~~~~~~~---~~~~~---~~~ew~~~~l~E~~RVL----Kpgg~l~-i 70 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYL-VGFRDRQGR---TIAGD---KTDEWLQPACNEMYRVL----KKDALMV-S 70 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcc-cccccCCCc---ccccc---cHHHHHHHHHHHHHHHc----CCCCEEE-E
Confidence 46678887765556678999999999994 221111100 00001 11122345566666665 9988765 4
Q ss_pred eCCCCCcCCHHHHHHHHHhCCcEEeec
Q 010971 312 TCSIMVTENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 312 TCSi~~eENE~vV~~~L~~~~~~lv~~ 338 (496)
-|+... -..+..++.+.++.+...
T Consensus 71 f~~~~~---~~~~~~al~~~GF~l~~~ 94 (227)
T PRK13699 71 FYGWNR---VDRFMAAWKNAGFSVVGH 94 (227)
T ss_pred Eecccc---HHHHHHHHHHCCCEEeeE
Confidence 566532 223334456667776553
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.29 E-value=1.9 Score=41.42 Aligned_cols=126 Identities=17% Similarity=0.182 Sum_probs=72.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.+.+|| +..|.|+.+.+++..+... ..|++++.++..+..+...++..+. ++.++..|..+.... + ..+
T Consensus 6 ~~~~vl-ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 6 AGKRAL-VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGG-RAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCCEEE-EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 466777 5556788999988766433 4788889998888877777765553 577777888764211 1 014
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHH----HHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLED----IQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~----i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.+|.|+..+ |....... ...+.++ +.....-...++..++..+.. ..+|.+|+.+.+
T Consensus 84 ~id~vi~~a---g~~~~~~~----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~g~iv~isS~ 144 (250)
T PRK12939 84 GLDGLVNNA---GITNSKSA----TELDIDTWDAVMNVNVRGTFLMLRAALPHLRD--SGRGRIVNLASD 144 (250)
T ss_pred CCCEEEECC---CCCCCCCh----hhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH--cCCeEEEEECch
Confidence 689998844 32211111 1112222 222222333455555554311 347899987664
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.31 Score=49.55 Aligned_cols=46 Identities=15% Similarity=0.045 Sum_probs=37.5
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r 225 (496)
.+|+.|||-++|+|..+. .|..++ ...+++|+++.-++.+..++..
T Consensus 207 ~~GD~VLDPF~GSGTT~~-AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGA-VAKASG--RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHH-HHHHcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence 589999999999997554 344443 4789999999999999999854
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=92.10 E-value=1.2 Score=43.65 Aligned_cols=77 Identities=17% Similarity=0.196 Sum_probs=55.4
Q ss_pred CCeEeeccCCCc--hHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCC-CCccccCCCCcCEE
Q 010971 179 KERVIDMAAAPG--GKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGN-ELPKVLGLNTVDRV 253 (496)
Q Consensus 179 g~~VLDmcAgpG--gKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~-~~~~~~~~~~fD~V 253 (496)
-..|++.||+-| ..|+.||..... .|.++++-.+...+....+.+..+|+.+ +.++.+|.. .+...+ ..+|.+
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~--~~iDF~ 119 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL--KGIDFV 119 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc--cCCCEE
Confidence 356788866533 346665554443 4699999999999999999999999876 577777753 333233 689999
Q ss_pred EECC
Q 010971 254 LLDA 257 (496)
Q Consensus 254 LlDa 257 (496)
|+|.
T Consensus 120 vVDc 123 (218)
T PF07279_consen 120 VVDC 123 (218)
T ss_pred EEeC
Confidence 9985
|
The function of this family is unknown. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.21 Score=54.46 Aligned_cols=102 Identities=21% Similarity=0.244 Sum_probs=57.1
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCcEEEE---EeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYA---NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g~V~A---~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
..+||+|||.|+++.+|... + -.++. +|..+.-++.+ -+-|+..+.-+-+ ...+| ++.+.||.|=
T Consensus 119 R~~LDvGcG~aSF~a~l~~r--~-V~t~s~a~~d~~~~qvqfa----leRGvpa~~~~~~-s~rLP--fp~~~fDmvH-- 186 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER--N-VTTMSFAPNDEHEAQVQFA----LERGVPAMIGVLG-SQRLP--FPSNAFDMVH-- 186 (506)
T ss_pred EEEEeccceeehhHHHHhhC--C-ceEEEcccccCCchhhhhh----hhcCcchhhhhhc-ccccc--CCccchhhhh--
Confidence 36899999999999888765 2 22222 24444333322 2235544321111 23455 3458899985
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
||.-.+ .|...+- -+|...-+ .|+|||++|+|.--++
T Consensus 187 --csrc~i---------~W~~~~g--------~~l~evdR----vLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 187 --CSRCLI---------PWHPNDG--------FLLFEVDR----VLRPGGYFVLSGPPVY 223 (506)
T ss_pred --cccccc---------cchhccc--------ceeehhhh----hhccCceEEecCCccc
Confidence 554432 2333321 13333333 3699999999988777
|
; GO: 0008168 methyltransferase activity |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.83 E-value=1.1 Score=46.11 Aligned_cols=95 Identities=16% Similarity=0.195 Sum_probs=57.1
Q ss_pred CCCCCCeEeeccCCCchHHHH---HHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcC
Q 010971 175 APQEKERVIDMAAAPGGKTTY---IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~---lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD 251 (496)
.+++|++||=.||| +.++. ++..+.+...|+++|.++.|++.++. ++.. ... + .+.. ...||
T Consensus 160 ~~~~g~~VlV~G~G--~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~~--~~~--~--~~~~---~~g~d 224 (341)
T cd08237 160 AHKDRNVIGVWGDG--NLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADET--YLI--D--DIPE---DLAVD 224 (341)
T ss_pred CCCCCCEEEEECCC--HHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCce--eeh--h--hhhh---ccCCc
Confidence 35789999988864 44443 34432233579999999999988753 3432 111 1 1111 12589
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
+|| | |+|... + -..+..+++++ ++||++|+..+
T Consensus 225 ~vi-D--~~G~~~-----------~-----------~~~~~~~~~~l----~~~G~iv~~G~ 257 (341)
T cd08237 225 HAF-E--CVGGRG-----------S-----------QSAINQIIDYI----RPQGTIGLMGV 257 (341)
T ss_pred EEE-E--CCCCCc-----------c-----------HHHHHHHHHhC----cCCcEEEEEee
Confidence 886 4 555210 0 12366777876 99999987554
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.37 Score=51.75 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=49.7
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCC
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNEL 241 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~ 241 (496)
-.|||+++|+|-.+++.+..+ ...|+|+++-+.+.+.++.-++++|.+ +|.+++.-.+++
T Consensus 68 v~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred EEEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence 469999999999988766665 357999999999999999999999986 487777655443
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.15 E-value=2.7 Score=44.55 Aligned_cols=80 Identities=13% Similarity=0.163 Sum_probs=58.5
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH--HHcC---C--CeEEEEecCCCCCccccCCCC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL--HRMG---V--TNTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl--~r~g---~--~nv~v~~~D~~~~~~~~~~~~ 249 (496)
..-++||-+|.|-|--.-.|.. .+.-+.|+-+|++|.+++....+. ...+ + +.+.+++.|+..+-+.- ...
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a-~~~ 365 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA-ADM 365 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh-ccc
Confidence 4567899999888865554443 244679999999999999988543 3322 2 35889999998775433 368
Q ss_pred cCEEEECCC
Q 010971 250 VDRVLLDAP 258 (496)
Q Consensus 250 fD~VLlDaP 258 (496)
||.|++|-|
T Consensus 366 fD~vIVDl~ 374 (508)
T COG4262 366 FDVVIVDLP 374 (508)
T ss_pred ccEEEEeCC
Confidence 999999987
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.00 E-value=3 Score=40.73 Aligned_cols=75 Identities=20% Similarity=0.235 Sum_probs=49.8
Q ss_pred eEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCCcC
Q 010971 181 RVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTVD 251 (496)
Q Consensus 181 ~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~fD 251 (496)
+|| +.-|+|+.+.+++..+. ....|++.+.+...++.+.+.+...+. ++.+...|..+..... ..+..|
T Consensus 3 ~vl-VtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 80 (263)
T PRK06181 3 VVI-ITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGG-EALVVPTDVSDAEACERLIEAAVARFGGID 80 (263)
T ss_pred EEE-EecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 455 44567888888876543 335899999998888777777766553 5667778876643211 114689
Q ss_pred EEEECC
Q 010971 252 RVLLDA 257 (496)
Q Consensus 252 ~VLlDa 257 (496)
.|+..+
T Consensus 81 ~vi~~a 86 (263)
T PRK06181 81 ILVNNA 86 (263)
T ss_pred EEEECC
Confidence 998743
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=90.86 E-value=3.7 Score=46.06 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=55.0
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCC--------CeEEEEecCCCCCcccc
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGV--------TNTIVCNYDGNELPKVL 245 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~--------~nv~v~~~D~~~~~~~~ 245 (496)
+.+.|..||-.| |+|+.+.+++..+- ....|++++.+..++..+...+..+++ .++.++.+|..+.....
T Consensus 76 ~~~~gKvVLVTG-ATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~ 154 (576)
T PLN03209 76 DTKDEDLAFVAG-ATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG 154 (576)
T ss_pred ccCCCCEEEEEC-CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence 345677777555 56889998887653 334899999999998887776655322 24778888887653221
Q ss_pred -CCCCcCEEEEC
Q 010971 246 -GLNTVDRVLLD 256 (496)
Q Consensus 246 -~~~~fD~VLlD 256 (496)
..+.+|.|++.
T Consensus 155 ~aLggiDiVVn~ 166 (576)
T PLN03209 155 PALGNASVVICC 166 (576)
T ss_pred HHhcCCCEEEEc
Confidence 12578999874
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.53 Score=46.28 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=36.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHH
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLH 224 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~ 224 (496)
..-+++|-|||.|...+.+.-+.++. ..|+|-|++...++.++.|+.
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 34589999999999999888775542 379999999999988888875
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.70 E-value=2.9 Score=40.03 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=50.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.+..||-.| |+|+.+.+++..+... ..|++++.++.++..+...+... ..+.++..|..+.... + ..+
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356777666 5788888888765433 48999999998887776666543 3466677776653211 1 014
Q ss_pred CcCEEEECC
Q 010971 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~fD~VLlDa 257 (496)
.+|.|+.-+
T Consensus 82 ~~d~vi~~a 90 (237)
T PRK07326 82 GLDVLIANA 90 (237)
T ss_pred CCCEEEECC
Confidence 689988754
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=90.66 E-value=1.1 Score=47.05 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=37.3
Q ss_pred hcCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH
Q 010971 173 ALAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTAN 222 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~n 222 (496)
.+.+++|++||..++|+ |..+.++|..++ .+.|+++|.++.+++.+++.
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc
Confidence 44567899999998776 666677777764 24699999999988877654
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.51 Score=44.80 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=29.8
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHH
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLT 220 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~ 220 (496)
-.+|+.|||-+||+|+.+. .|..++ ..-+++|+++.-++.++
T Consensus 189 t~~gdiVlDpF~GSGTT~~-aa~~l~--R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAV-AAEELG--RRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp S-TT-EEEETT-TTTHHHH-HHHHTT---EEEEEESSHHHHHHHH
T ss_pred hccceeeehhhhccChHHH-HHHHcC--CeEEEEeCCHHHHHHhc
Confidence 3579999999999997554 444443 47899999999888765
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.50 E-value=1.7 Score=43.47 Aligned_cols=101 Identities=20% Similarity=0.152 Sum_probs=57.8
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g--~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD 251 (496)
+.+.+|++||=+++ |+.++.++++.+..| .|+++|.++.|++.+ +.+|.+.+.-.......+........+|
T Consensus 116 ~~~~~g~~VlV~G~--G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a----~~~Ga~~~i~~~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 116 AGDLKGRRVLVVGA--GMLGLTAAAAAAAAGAARVVAADPSPDRRELA----LSFGATALAEPEVLAERQGGLQNGRGVD 189 (280)
T ss_pred ccCCCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH----HHcCCcEecCchhhHHHHHHHhCCCCCC
Confidence 34568999998865 555555444433223 488999999988655 4477754321110000111111224699
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+|+- |+|.. ..+..+++++ ++||+++...
T Consensus 190 ~vid---~~G~~-------------------------~~~~~~~~~l----~~~G~iv~~G 218 (280)
T TIGR03366 190 VALE---FSGAT-------------------------AAVRACLESL----DVGGTAVLAG 218 (280)
T ss_pred EEEE---CCCCh-------------------------HHHHHHHHHh----cCCCEEEEec
Confidence 8864 55432 1356677776 9999987543
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.95 Score=45.77 Aligned_cols=86 Identities=20% Similarity=0.263 Sum_probs=59.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
....|-|+|||-+-.+. .. .-.|+++|+.+ .|-.|+..|++.+| +.++++|++++
T Consensus 180 ~~~vIaD~GCGEakiA~----~~--~~kV~SfDL~a---------------~~~~V~~cDm~~vP--l~d~svDvaV~-- 234 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS----SE--RHKVHSFDLVA---------------VNERVIACDMRNVP--LEDESVDVAVF-- 234 (325)
T ss_pred CceEEEecccchhhhhh----cc--ccceeeeeeec---------------CCCceeeccccCCc--CccCcccEEEe--
Confidence 35678999999876443 22 24689999764 24456667888887 45689999987
Q ss_pred CC-CCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 258 PC-SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 258 PC-Sg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
| |-+|+ .-...+..|.++| ++||.+.....+
T Consensus 235 -CLSLMgt---------------------n~~df~kEa~RiL----k~gG~l~IAEv~ 266 (325)
T KOG3045|consen 235 -CLSLMGT---------------------NLADFIKEANRIL----KPGGLLYIAEVK 266 (325)
T ss_pred -eHhhhcc---------------------cHHHHHHHHHHHh----ccCceEEEEehh
Confidence 5 33332 1234578888876 999998776544
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=90.23 E-value=2.2 Score=44.18 Aligned_cols=99 Identities=21% Similarity=0.209 Sum_probs=59.2
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc----cccCC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGL 247 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g--~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~----~~~~~ 247 (496)
..+++|++||=.++ |+.+..++++.+..| .|+++|.++.|++.+ +++|.+.+ ++.....+. .....
T Consensus 172 ~~~~~g~~VlV~G~--g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~----~~~Ga~~~--i~~~~~~~~~~i~~~~~~ 243 (358)
T TIGR03451 172 GGVKRGDSVAVIGC--GGVGDAAIAGAALAGASKIIAVDIDDRKLEWA----REFGATHT--VNSSGTDPVEAIRALTGG 243 (358)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH----HHcCCceE--EcCCCcCHHHHHHHHhCC
Confidence 35678999998864 555554444433333 599999999998877 35777432 222211111 11122
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
..+|+|+ | |+|.. ..+..++.++ ++||++|+..
T Consensus 244 ~g~d~vi-d--~~g~~-------------------------~~~~~~~~~~----~~~G~iv~~G 276 (358)
T TIGR03451 244 FGADVVI-D--AVGRP-------------------------ETYKQAFYAR----DLAGTVVLVG 276 (358)
T ss_pred CCCCEEE-E--CCCCH-------------------------HHHHHHHHHh----ccCCEEEEEC
Confidence 4689886 3 66531 1255566776 9999998654
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.19 E-value=1.8 Score=44.46 Aligned_cols=99 Identities=19% Similarity=0.218 Sum_probs=59.1
Q ss_pred cCCCCCCeEeeccCCCchHHH---HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCC---CccccCC
Q 010971 174 LAPQEKERVIDMAAAPGGKTT---YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE---LPKVLGL 247 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~---~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~---~~~~~~~ 247 (496)
...++|++||=.++ |+.+. ++|..++ ...|++++.++.+++.+ +.+|...+ ++.+... +......
T Consensus 156 ~~~~~g~~vlV~G~--g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~----~~~Ga~~~--i~~~~~~~~~~~~~~~~ 226 (347)
T PRK10309 156 AQGCEGKNVIIIGA--GTIGLLAIQCAVALG-AKSVTAIDINSEKLALA----KSLGAMQT--FNSREMSAPQIQSVLRE 226 (347)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHH----HHcCCceE--ecCcccCHHHHHHHhcC
Confidence 34568999998865 44544 4444443 23578999999988765 45676433 2222111 1111222
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
..+|.+++| |+|.. ..+..+++++ ++||+++..-
T Consensus 227 ~~~d~~v~d--~~G~~-------------------------~~~~~~~~~l----~~~G~iv~~G 260 (347)
T PRK10309 227 LRFDQLILE--TAGVP-------------------------QTVELAIEIA----GPRAQLALVG 260 (347)
T ss_pred CCCCeEEEE--CCCCH-------------------------HHHHHHHHHh----hcCCEEEEEc
Confidence 468866677 66542 1366777877 9999988653
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.06 E-value=5.8 Score=38.99 Aligned_cols=78 Identities=10% Similarity=0.010 Sum_probs=48.7
Q ss_pred CCCeEeeccCCC-chHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAP-GGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgp-GgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|..||-.|+++ +|.+..++..+-. ...|+.++.+....+.+.+....++ .+.++..|..+..... ..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD--APIFLPLDVREPGQLEAVFARIAEEW 86 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc--cceEEecCcCCHHHHHHHHHHHHHHc
Confidence 477899999988 4888888876543 3478778887654444444333333 2345667876542110 12
Q ss_pred CCcCEEEECC
Q 010971 248 NTVDRVLLDA 257 (496)
Q Consensus 248 ~~fD~VLlDa 257 (496)
+..|+++.+|
T Consensus 87 g~ld~lv~nA 96 (258)
T PRK07533 87 GRLDFLLHSI 96 (258)
T ss_pred CCCCEEEEcC
Confidence 5789999876
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.00 E-value=4.5 Score=39.08 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=53.3
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~ 249 (496)
+.+|| +..|+|+.+.+++..+...| .|++++.++..+..+...+...+. ++.++..|..+.... + ..+.
T Consensus 4 ~~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK12429 4 GKVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGG-KAIGVAMDVTDEEAINAGIDYAVETFGG 81 (258)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 45666 45567899999888664444 899999999988888777776554 466677787653211 1 1146
Q ss_pred cCEEEECCC
Q 010971 250 VDRVLLDAP 258 (496)
Q Consensus 250 fD~VLlDaP 258 (496)
+|.|+..+.
T Consensus 82 ~d~vi~~a~ 90 (258)
T PRK12429 82 VDILVNNAG 90 (258)
T ss_pred CCEEEECCC
Confidence 899998553
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.00 E-value=6.2 Score=37.85 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=53.3
Q ss_pred CCeEeeccCCCchHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~-~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~ 249 (496)
+.+||-.| |+|+.+.+++..+ .....|++++.+...+..+...+...+. ++.++..|..+.... + ..+.
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGV-KVVIATADVSDYEEVTAAIEQLKNELGS 84 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56677666 5788888887754 3334899999998888777766665543 577778887654221 1 1146
Q ss_pred cCEEEECCCC
Q 010971 250 VDRVLLDAPC 259 (496)
Q Consensus 250 fD~VLlDaPC 259 (496)
.|.|+..+..
T Consensus 85 id~vi~~ag~ 94 (239)
T PRK07666 85 IDILINNAGI 94 (239)
T ss_pred ccEEEEcCcc
Confidence 8999986643
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.93 E-value=5.1 Score=39.47 Aligned_cols=124 Identities=14% Similarity=0.172 Sum_probs=71.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.+.+||-.| |.|+.+.+++..+...| .|++++.++..+..+...+...+. .+.++..|..+.... + ..+
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP-EGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 467888776 57788888776554334 899999999888777766766553 356677787653211 0 124
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHH----HHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~----l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
.+|.|+..+.. ....+- ...+.+++.. ...-...++..++..+ .+++|.||+.+.
T Consensus 86 ~iD~vi~~ag~-----~~~~~~--~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l---~~~~g~iv~iss 144 (264)
T PRK07576 86 PIDVLVSGAAG-----NFPAPA--AGMSANGFKTVVDIDLLGTFNVLKAAYPLL---RRPGASIIQISA 144 (264)
T ss_pred CCCEEEECCCC-----CCCCcc--ccCCHHHHHHHHHHHhHHHHHHHHHHHHHH---HhCCCEEEEECC
Confidence 68999986521 111111 1223333222 2222344566666554 146788887544
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=89.91 E-value=2.4 Score=43.76 Aligned_cols=96 Identities=16% Similarity=0.235 Sum_probs=55.3
Q ss_pred CCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeC---CHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcC
Q 010971 176 PQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEM---KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 176 ~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~---s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD 251 (496)
+++|++||=.++|+ |..+.++|..++ ..|++++. ++.|++.+ +++|...+ ......+........||
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~----~~~Ga~~v---~~~~~~~~~~~~~~~~d 240 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIV----EELGATYV---NSSKTPVAEVKLVGEFD 240 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHH----HHcCCEEe---cCCccchhhhhhcCCCC
Confidence 46899999887643 223344555543 37888886 67777654 56787532 11111110001124699
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+|+- |+|.. ..+..+++++ ++||+++...
T Consensus 241 ~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~G 269 (355)
T cd08230 241 LIIE---ATGVP-------------------------PLAFEALPAL----APNGVVILFG 269 (355)
T ss_pred EEEE---CcCCH-------------------------HHHHHHHHHc----cCCcEEEEEe
Confidence 8875 55532 1366677776 9999987543
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.79 E-value=5.9 Score=38.35 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=54.1
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||-.| |.|+.+.+++..+...| .|++.+.+..+++.+...+...+. ++.++..|..+..... ..+
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTDYQSIKAAVAHAETEAG 85 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 467777666 67888888887765444 799999999998888877765543 4666777876532110 124
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
.+|.|+..+.
T Consensus 86 ~~d~li~~ag 95 (258)
T PRK06949 86 TIDILVNNSG 95 (258)
T ss_pred CCCEEEECCC
Confidence 6899988654
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.72 E-value=6.8 Score=38.05 Aligned_cols=126 Identities=12% Similarity=0.107 Sum_probs=72.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.|.+||=.| |.|+.+..++..+- ....|+..+.+...+..+...+...|. ++.++..|..+.... + ..+
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 467788666 57888888887654 334899999999888888777776654 356677787653211 0 124
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHH----HHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~----l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
..|.|+..+.....+.+ ...+.+++.. ...-...++..+...+.. +..|.||+.++.
T Consensus 87 ~~d~li~~ag~~~~~~~-------~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~g~iv~iss~ 147 (255)
T PRK07523 87 PIDILVNNAGMQFRTPL-------EDFPADAFERLLRTNISSVFYVGQAVARHMIA--RGAGKIINIASV 147 (255)
T ss_pred CCCEEEECCCCCCCCCh-------hhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH--hCCeEEEEEccc
Confidence 68999886543222211 1122233221 112223345555544311 245788887664
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.58 E-value=4.6 Score=39.07 Aligned_cols=82 Identities=13% Similarity=0.114 Sum_probs=55.2
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc---------ccc
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP---------KVL 245 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~---------~~~ 245 (496)
+.++.+||=.| |.|+.+..++..+...| .|++++.+...+..+...+...+...+.+...|..... ...
T Consensus 9 ~~~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 9 LLKDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred ccCCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 34677788666 57788887776654334 89999999988888888887776555666666664211 000
Q ss_pred -CCCCcCEEEECCC
Q 010971 246 -GLNTVDRVLLDAP 258 (496)
Q Consensus 246 -~~~~fD~VLlDaP 258 (496)
..+.+|.|+..+-
T Consensus 88 ~~~~~id~vi~~Ag 101 (247)
T PRK08945 88 EQFGRLDGVLHNAG 101 (247)
T ss_pred HHhCCCCEEEECCc
Confidence 1147899998664
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.50 E-value=6.1 Score=40.91 Aligned_cols=80 Identities=13% Similarity=0.099 Sum_probs=54.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.+.+||=.| |+||.+..++..+.. ...|+.++.+..+++.+...+...|. .+.++..|..+..... ..+
T Consensus 6 ~~k~vlITG-As~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 6 HGAVVVITG-ASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA-EVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCEEEEcC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 456677444 567888888875543 34899999999999999888888775 3555667776532111 125
Q ss_pred CcCEEEECCCC
Q 010971 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~fD~VLlDaPC 259 (496)
.+|.++..+-.
T Consensus 84 ~iD~lVnnAG~ 94 (330)
T PRK06139 84 RIDVWVNNVGV 94 (330)
T ss_pred CCCEEEECCCc
Confidence 78999986643
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.15 E-value=0.83 Score=46.22 Aligned_cols=70 Identities=20% Similarity=0.282 Sum_probs=51.7
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
+.+|+.-.|+||+|||.|-+|-. ..-.|+|+|.-+ +.+++...| .|..+..|+..+... ....|-.+|
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVk---r~m~V~aVDng~-----ma~sL~dtg--~v~h~r~DGfk~~P~--r~~idWmVC 276 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVK---RNMRVYAVDNGP-----MAQSLMDTG--QVTHLREDGFKFRPT--RSNIDWMVC 276 (358)
T ss_pred hcCCceeeecccCCCccchhhhh---cceEEEEeccch-----hhhhhhccc--ceeeeeccCcccccC--CCCCceEEe
Confidence 45899999999999999986654 345899999765 333443333 477888999887431 378999999
Q ss_pred CC
Q 010971 256 DA 257 (496)
Q Consensus 256 Da 257 (496)
|.
T Consensus 277 Dm 278 (358)
T COG2933 277 DM 278 (358)
T ss_pred eh
Confidence 85
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=88.97 E-value=1.9 Score=43.94 Aligned_cols=100 Identities=18% Similarity=0.213 Sum_probs=57.5
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCC-cE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEec-CCCCCccccCCCCc
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNT-GL-IYANEMKASRLKSLTANLHRMGVTNTIVCNY-DGNELPKVLGLNTV 250 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~-g~-V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~-D~~~~~~~~~~~~f 250 (496)
+.+++|++||=.++ |+.+..++++.+.. .. |++.+.++.|++.+ ..+|+..+.-... +...+........|
T Consensus 159 ~~~~~g~~vlV~G~--G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~----~~~ga~~~i~~~~~~~~~~~~~~~~~~~ 232 (339)
T cd08239 159 VGVSGRDTVLVVGA--GPVGLGALMLARALGAEDVIGVDPSPERLELA----KALGADFVINSGQDDVQEIRELTSGAGA 232 (339)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH----HHhCCCEEEcCCcchHHHHHHHhCCCCC
Confidence 45678999998854 56655544433222 24 99999999987655 4567754321111 10111111222479
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
|.|+- |+|.. ..+..+++++ ++||+++..
T Consensus 233 d~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 261 (339)
T cd08239 233 DVAIE---CSGNT-------------------------AARRLALEAV----RPWGRLVLV 261 (339)
T ss_pred CEEEE---CCCCH-------------------------HHHHHHHHHh----hcCCEEEEE
Confidence 98874 44432 1345667776 899998743
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=88.83 E-value=2.7 Score=44.08 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=35.9
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCe
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTN 230 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g--~V~A~D~s~~rl~~l~~nl~r~g~~n 230 (496)
..+++|++||=.++ |+.++.++++....| .|+++|.++.|++.++ .+|...
T Consensus 194 ~~~~~g~~VlV~G~--G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~----~~Ga~~ 246 (381)
T PLN02740 194 ANVQAGSSVAIFGL--GAVGLAVAEGARARGASKIIGVDINPEKFEKGK----EMGITD 246 (381)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHH----HcCCcE
Confidence 45788999998864 666665555443333 6999999999988774 478754
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=88.82 E-value=2.9 Score=43.11 Aligned_cols=51 Identities=20% Similarity=0.269 Sum_probs=35.2
Q ss_pred cCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe
Q 010971 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (496)
Q Consensus 174 L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n 230 (496)
..+++|++||=.+||+ |.-+.++|..++ ..|++.|.++.|++.+. .+|.+.
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~----~~Ga~~ 213 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMK----GFGADL 213 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHH----HhCCce
Confidence 3567899999988744 334445555553 37999999999887653 467754
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=88.79 E-value=1 Score=44.50 Aligned_cols=49 Identities=14% Similarity=0.049 Sum_probs=38.3
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG 227 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g 227 (496)
-.+|+.|||-+||+|+.... |..++ ...+++|+++.-.+.+.++++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~~a-a~~~~--r~~~g~e~~~~y~~~~~~r~~~~~ 209 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVA-ALQSG--RRYIGIELLEQYHRAGQQRLAAVQ 209 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHH-HHHcC--CCEEEEecCHHHHHHHHHHHHHHH
Confidence 35899999999999976543 33332 478899999999999988887653
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.78 E-value=9.3 Score=37.20 Aligned_cols=130 Identities=14% Similarity=0.084 Sum_probs=73.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.| |+|+.+.+++..+-..| .|+.++.+...+..+...+...+. ++.++..|..+..... ..+
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 466777666 67888998888764333 789999999888887777766553 4556778877642220 114
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHh-hhhcCCCCcEEEEEeCC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDM-VDANSKSGGYIVYSTCS 314 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~-l~~~lkpGG~LVYSTCS 314 (496)
.+|.|+..+..+..+.+...+.-.| ...+.....-...++..+... +.. ++.|.+|+.+.+
T Consensus 89 ~id~vi~~ag~~~~~~~~~~~~~~~---~~~~~~n~~~~~~l~~~~~~~~l~~--~~~~~~v~~sS~ 150 (259)
T PRK08213 89 HVDILVNNAGATWGAPAEDHPVEAW---DKVMNLNVRGLFLLSQAVAKRSMIP--RGYGRIINVASV 150 (259)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHH---HHHHhHHhHHHHHHHHHHHHHHHHh--cCCeEEEEECCh
Confidence 6899998665433222222221111 111222233344455555443 211 344677776553
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.60 E-value=7.6 Score=37.10 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=51.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||-.|+ +|+.+.++++.+...| .|++.+.+...+..+...+...+ ++.++..|..+..... ..+
T Consensus 4 ~~~~vlItGa-~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGV-SEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG--NIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 3567887776 5888888887764434 89999999988877765554433 5667777876532110 014
Q ss_pred CcCEEEECC
Q 010971 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~fD~VLlDa 257 (496)
.+|.|+..+
T Consensus 81 ~id~ii~~a 89 (238)
T PRK05786 81 AIDGLVVTV 89 (238)
T ss_pred CCCEEEEcC
Confidence 579888755
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=88.50 E-value=2.4 Score=42.97 Aligned_cols=97 Identities=19% Similarity=0.199 Sum_probs=55.7
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCC-CCcc---ccCCC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN-ELPK---VLGLN 248 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~-~~~~---~~~~~ 248 (496)
..+++|++||=.++ .|+.+..++++.+.. ..|++.+.+..+.+.+ ..+|++.+. ..+.. .+.. .....
T Consensus 134 ~~~~~g~~VLI~ga-~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~----~~lGa~~vi--~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 134 CGVKGGETVMVNAA-AGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYL----KKLGFDVAF--NYKTVKSLEETLKKASPD 206 (325)
T ss_pred hCCCCCCEEEEeCC-ccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH----HHcCCCEEE--eccccccHHHHHHHhCCC
Confidence 35788999997664 344444443333322 3789999998887666 347875432 22211 1111 11124
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVY 310 (496)
.+|.|| | |+|.. .+..+++++ ++||++|-
T Consensus 207 gvdvv~-d--~~G~~--------------------------~~~~~~~~l----~~~G~iv~ 235 (325)
T TIGR02825 207 GYDCYF-D--NVGGE--------------------------FSNTVIGQM----KKFGRIAI 235 (325)
T ss_pred CeEEEE-E--CCCHH--------------------------HHHHHHHHh----CcCcEEEE
Confidence 689887 4 44421 245666776 99999973
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.26 E-value=9.1 Score=37.69 Aligned_cols=77 Identities=13% Similarity=0.119 Sum_probs=47.0
Q ss_pred CCCeEeeccCCC-chHHHHHHHHcCCCc-EEEEEeCC---HHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c----
Q 010971 178 EKERVIDMAAAP-GGKTTYIAALMKNTG-LIYANEMK---ASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L---- 245 (496)
Q Consensus 178 ~g~~VLDmcAgp-GgKT~~lA~l~~~~g-~V~A~D~s---~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~---- 245 (496)
.|.++|-.|+++ +|.+..++..+-..| .|+..+.+ ..+++.+.. .+.-.++.++..|..+.... +
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 82 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELAD---TLEGQESLLLPCDVTSDEEITACFETIK 82 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHH---HcCCCceEEEecCCCCHHHHHHHHHHHH
Confidence 467889888884 889988887665334 67766654 334444433 33223466677787654211 0
Q ss_pred -CCCCcCEEEECC
Q 010971 246 -GLNTVDRVLLDA 257 (496)
Q Consensus 246 -~~~~fD~VLlDa 257 (496)
..+.+|.++..|
T Consensus 83 ~~~g~ld~lv~na 95 (257)
T PRK08594 83 EEVGVIHGVAHCI 95 (257)
T ss_pred HhCCCccEEEECc
Confidence 126789888765
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.16 E-value=7.6 Score=44.35 Aligned_cols=122 Identities=19% Similarity=0.205 Sum_probs=69.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.|..||=.| |.|+.+.+++..+... ..|+++|.+..++..+...+... .++.++..|..+.... + ..+
T Consensus 421 ~gk~vLVTG-asggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTG-AAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEec-CCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 467777554 4678888877765433 48999999998887776655432 3566777787653211 1 124
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHH----HHHHHHHHHHHHHHHhhhhcCCC---CcEEEEEeC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQ----KCSYLQKQLILAAIDMVDANSKS---GGYIVYSTC 313 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~----~l~~lQ~~LL~~A~~~l~~~lkp---GG~LVYSTC 313 (496)
.+|.|+..+-.+..+.+.. .+.++.. ....-...++..++..+ +. ||.||+.+-
T Consensus 498 ~iDvvI~~AG~~~~~~~~~-------~~~~~~~~~~~~N~~g~~~l~~~~~~~l----~~~~~~g~iV~vsS 558 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEE-------TSDEDWRRSFDVNATGHFLVAREAVRIM----KAQGLGGSIVFIAS 558 (681)
T ss_pred CCCEEEECCCCCCCCChhh-------CCHHHHHHHHHHHhHHHHHHHHHHHHHH----HhcCCCcEEEEECC
Confidence 7899988654333332211 1222221 22222344566666665 33 677776543
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=88.02 E-value=2.7 Score=42.38 Aligned_cols=97 Identities=21% Similarity=0.181 Sum_probs=57.7
Q ss_pred CCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc---cccCCCCc
Q 010971 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP---KVLGLNTV 250 (496)
Q Consensus 175 ~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~---~~~~~~~f 250 (496)
.+++|++||..++|+ |..++++|..++ ..|++.+.++.+.+.++ .+|+..+.. .....+. .......+
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~----~~g~~~~~~--~~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAK----ELGADEVLN--SLDDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHH----HhCCCEEEc--CCCcCHHHHHHHhcCCCc
Confidence 367899999965432 444555566553 46899999998876653 367654322 1111111 11223579
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
|.|+- |+|.+ ..+..+++.+ ++||+++..
T Consensus 234 D~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 262 (338)
T cd08254 234 DVIFD---FVGTQ-------------------------PTFEDAQKAV----KPGGRIVVV 262 (338)
T ss_pred eEEEE---CCCCH-------------------------HHHHHHHHHh----hcCCEEEEE
Confidence 98864 44432 1356677776 999998864
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.00 E-value=7.7 Score=37.83 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=52.9
Q ss_pred eEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCCcCE
Q 010971 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTVDR 252 (496)
Q Consensus 181 ~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~fD~ 252 (496)
.||=.| |++|.+..++..+.....|+..+.+..+++.+.+.++..|...+.++..|..+..... ..+..|.
T Consensus 2 ~vlItG-as~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 80 (246)
T PRK05599 2 SILILG-GTSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEISL 80 (246)
T ss_pred eEEEEe-CccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCCE
Confidence 355344 4677788888766555688888999999998888888776555667778877642211 1257899
Q ss_pred EEECC
Q 010971 253 VLLDA 257 (496)
Q Consensus 253 VLlDa 257 (496)
++..+
T Consensus 81 lv~na 85 (246)
T PRK05599 81 AVVAF 85 (246)
T ss_pred EEEec
Confidence 98754
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.89 E-value=11 Score=36.86 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=53.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHH-cCCCeEEEEecCCCCCccc---c-----CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHR-MGVTNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r-~g~~nv~v~~~D~~~~~~~---~-----~~ 247 (496)
.+.+||=.|++.+|.+..++..+... ..|+.+|.+..+++...+.+.. +|..++.++..|..+.... + ..
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 95 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVERL 95 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46778777765236777777655332 4788999999888888777765 5555677788888753211 1 11
Q ss_pred CCcCEEEECCC
Q 010971 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~fD~VLlDaP 258 (496)
+..|.|+..+-
T Consensus 96 g~id~li~~ag 106 (262)
T PRK07831 96 GRLDVLVNNAG 106 (262)
T ss_pred CCCCEEEECCC
Confidence 56899988654
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.87 E-value=8.2 Score=37.34 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=52.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.+.+||=.| |+|+.+.+++..+-.. ..|+.++.++..++.+...+...+. ++.++..|..+.... + ..+
T Consensus 4 ~~k~vlItG-a~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSG-VGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGR-RALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 356777444 5778888888766433 4899999999888888777766553 466777887653211 0 125
Q ss_pred CcCEEEECC
Q 010971 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~fD~VLlDa 257 (496)
..|.|+..+
T Consensus 82 ~~d~vi~~a 90 (258)
T PRK07890 82 RVDALVNNA 90 (258)
T ss_pred CccEEEECC
Confidence 689998865
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.79 E-value=9.6 Score=36.70 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=52.7
Q ss_pred eEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc---C--CCCcCEEE
Q 010971 181 RVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---G--LNTVDRVL 254 (496)
Q Consensus 181 ~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~---~--~~~fD~VL 254 (496)
+||-.| |+|+.+.+++..+-..| .|++++.++.....+...+...+-.++.++..|..+..... . ...+|.|+
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv 81 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIVL 81 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEEE
Confidence 566444 67888888887664444 89999999988887777766554457888888887653211 0 13579999
Q ss_pred ECCC
Q 010971 255 LDAP 258 (496)
Q Consensus 255 lDaP 258 (496)
..+.
T Consensus 82 ~~ag 85 (243)
T PRK07102 82 IAVG 85 (243)
T ss_pred ECCc
Confidence 8664
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.78 E-value=9.1 Score=37.89 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=54.5
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~ 249 (496)
+.+|| +.-|.|+.+.+++..+... ..|+.+|.+...+..+...+...+. ++.++..|..+.... + ..+.
T Consensus 6 ~k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 6 GKVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56777 5556788898888765433 4789999998887777666655443 466778888764221 1 1146
Q ss_pred cCEEEECCCCCCC
Q 010971 250 VDRVLLDAPCSGT 262 (496)
Q Consensus 250 fD~VLlDaPCSg~ 262 (496)
+|.|+..|--++.
T Consensus 84 id~vi~~Ag~~~~ 96 (287)
T PRK06194 84 VHLLFNNAGVGAG 96 (287)
T ss_pred CCEEEECCCCCCC
Confidence 8999987654433
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=87.68 E-value=3.7 Score=43.58 Aligned_cols=48 Identities=10% Similarity=0.023 Sum_probs=31.8
Q ss_pred CCCCCCeEeeccC-C-CchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHH
Q 010971 175 APQEKERVIDMAA-A-PGGKTTYIAALMK-NTGLIYANEMKASRLKSLTAN 222 (496)
Q Consensus 175 ~~~~g~~VLDmcA-g-pGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~n 222 (496)
.+++|++||=+++ | -|..++++|..++ +...|++.|.++.|++.+++.
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 4678999887653 3 2333344555442 223799999999999988764
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.58 E-value=15 Score=35.39 Aligned_cols=81 Identities=21% Similarity=0.243 Sum_probs=53.8
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEecCCCCCcccc--------CCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g-~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
+.+||=.| |+||.+.+++..+... ..|+..+.++.++..+...+.... -.++.++..|..+..... ..+
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 34566555 6788888888765433 488899999999888877765542 235777788887642110 125
Q ss_pred CcCEEEECCCCC
Q 010971 249 TVDRVLLDAPCS 260 (496)
Q Consensus 249 ~fD~VLlDaPCS 260 (496)
..|.|+..+-.+
T Consensus 81 ~id~vi~~ag~~ 92 (248)
T PRK08251 81 GLDRVIVNAGIG 92 (248)
T ss_pred CCCEEEECCCcC
Confidence 689999866443
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.10 E-value=8.1 Score=37.00 Aligned_cols=125 Identities=21% Similarity=0.243 Sum_probs=69.0
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeC-CHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~-s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
+.+||=.| |.|+.+.+++..+...| .|+.+.. +......+.+.+...+. ++.++..|..+.... + ..+
T Consensus 5 ~~~vlItG-~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (245)
T PRK12937 5 NKVAIVTG-ASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGG-RAIAVQADVADAAAVTRLFDAAETAFG 82 (245)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45566444 56888988888765444 5555443 45556666666666553 567777887654211 1 124
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHH----HHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC----SYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l----~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
..|.|+..+.-.+.+.+ +..+.++.... ..-...++..++..+ +.+|.||+.+++..
T Consensus 83 ~id~vi~~ag~~~~~~~-------~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~----~~~~~iv~~ss~~~ 143 (245)
T PRK12937 83 RIDVLVNNAGVMPLGTI-------ADFDLEDFDRTIATNLRGAFVVLREAARHL----GQGGRIINLSTSVI 143 (245)
T ss_pred CCCEEEECCCCCCCCCh-------hhCCHHHHHHHHhhhchHHHHHHHHHHHHh----ccCcEEEEEeeccc
Confidence 68999986532111111 11223333221 122234455555554 67899999987643
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.05 E-value=8.1 Score=37.96 Aligned_cols=78 Identities=9% Similarity=0.146 Sum_probs=53.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC--cEEEEEeCCHHH-HHHHHHHHHHcCCCeEEEEecCCCCCcc-------ccCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT--GLIYANEMKASR-LKSLTANLHRMGVTNTIVCNYDGNELPK-------VLGL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~--g~V~A~D~s~~r-l~~l~~nl~r~g~~nv~v~~~D~~~~~~-------~~~~ 247 (496)
.+.+||-.| |+||.+.+++..+-.. ..|++.+.+... ++.+.+.+...+..++.++..|..+... ....
T Consensus 7 ~~~~vlItG-as~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 85 (253)
T PRK07904 7 NPQTILLLG-GTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred CCcEEEEEc-CCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence 455676555 4788999988764332 388899988875 7777777777775578888888765432 1112
Q ss_pred CCcCEEEEC
Q 010971 248 NTVDRVLLD 256 (496)
Q Consensus 248 ~~fD~VLlD 256 (496)
+..|.++..
T Consensus 86 g~id~li~~ 94 (253)
T PRK07904 86 GDVDVAIVA 94 (253)
T ss_pred CCCCEEEEe
Confidence 479988873
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=86.91 E-value=15 Score=35.37 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=51.6
Q ss_pred eEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc-------ccc-CCCCcC
Q 010971 181 RVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP-------KVL-GLNTVD 251 (496)
Q Consensus 181 ~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~-------~~~-~~~~fD 251 (496)
+||=.| |+|+.+.+++..+- ....|++++.+....+.+...+...+. ++.++..|..+.. ... .....|
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 80 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGG-SVIYLVADVTKEDEIADMIAAAAAEFGGLD 80 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence 455444 66888888886553 334899999999888888777765553 5777778877643 110 124689
Q ss_pred EEEECCCCC
Q 010971 252 RVLLDAPCS 260 (496)
Q Consensus 252 ~VLlDaPCS 260 (496)
.|+..+-.+
T Consensus 81 ~vi~~a~~~ 89 (255)
T TIGR01963 81 ILVNNAGIQ 89 (255)
T ss_pred EEEECCCCC
Confidence 999866433
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.76 E-value=9.9 Score=36.79 Aligned_cols=80 Identities=14% Similarity=0.194 Sum_probs=54.7
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~ 249 (496)
|.+|| +..|+|+.+.+++..+... ..|++++.++..+..+.+.+...|. ++.++..|..+..... ..+.
T Consensus 7 ~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (262)
T PRK13394 7 GKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGG-KAIGVAMDVTNEDAVNAGIDKVAERFGS 84 (262)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCc-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56677 5566788888888765433 4889999999888888887776654 4667788877643211 1145
Q ss_pred cCEEEECCCCC
Q 010971 250 VDRVLLDAPCS 260 (496)
Q Consensus 250 fD~VLlDaPCS 260 (496)
.|.|+..+-+.
T Consensus 85 ~d~vi~~ag~~ 95 (262)
T PRK13394 85 VDILVSNAGIQ 95 (262)
T ss_pred CCEEEECCccC
Confidence 89998865443
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=86.65 E-value=12 Score=36.22 Aligned_cols=76 Identities=16% Similarity=0.205 Sum_probs=51.8
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCCc
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNTV 250 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~f 250 (496)
..|| +..|+|+.+.+++..+-..| .|+.++.+..++..+...+...+. ++.++..|..+.... + ..+..
T Consensus 3 k~~l-ItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (256)
T PRK08643 3 KVAL-VTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGG-KAIAVKADVSDRDQVFAAVRQVVDTFGDL 80 (256)
T ss_pred CEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 3455 44577888888887664334 899999999888888888776653 566777887764211 0 12468
Q ss_pred CEEEECC
Q 010971 251 DRVLLDA 257 (496)
Q Consensus 251 D~VLlDa 257 (496)
|.|+..+
T Consensus 81 d~vi~~a 87 (256)
T PRK08643 81 NVVVNNA 87 (256)
T ss_pred CEEEECC
Confidence 9998855
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.60 E-value=7.5 Score=38.35 Aligned_cols=72 Identities=18% Similarity=0.139 Sum_probs=45.9
Q ss_pred cCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCCcCEEEEC
Q 010971 186 AAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNTVDRVLLD 256 (496)
Q Consensus 186 cAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~fD~VLlD 256 (496)
..|+|+.+..++..+.. ...|+.++.+...+..+...+...+...+.+...|..+.... . ..+.+|.|+..
T Consensus 6 tGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ 85 (272)
T PRK07832 6 TGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMDVVMNI 85 (272)
T ss_pred eCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 34567888887775543 347888899888888777777666644444456676543110 0 12468999875
Q ss_pred C
Q 010971 257 A 257 (496)
Q Consensus 257 a 257 (496)
+
T Consensus 86 a 86 (272)
T PRK07832 86 A 86 (272)
T ss_pred C
Confidence 4
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.51 E-value=18 Score=36.22 Aligned_cols=78 Identities=12% Similarity=0.076 Sum_probs=47.4
Q ss_pred CCCeEeeccCCC-chHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAP-GGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgp-GgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|..||=.|++. +|.+..+|..+... ..|+.++.+....+.+.+....++.. .++..|..+..... ..
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~--~~~~~Dv~d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD--YVYELDVSKPEHFKSLAESLKKDL 81 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc--eEEEecCCCHHHHHHHHHHHHHHc
Confidence 367788888774 68888888765433 47888888753233344334444533 35567877643210 12
Q ss_pred CCcCEEEECC
Q 010971 248 NTVDRVLLDA 257 (496)
Q Consensus 248 ~~fD~VLlDa 257 (496)
+.+|.++.+|
T Consensus 82 g~iDilVnnA 91 (274)
T PRK08415 82 GKIDFIVHSV 91 (274)
T ss_pred CCCCEEEECC
Confidence 6789988866
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=86.35 E-value=3.5 Score=43.29 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=58.8
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc----cccCC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGL 247 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g--~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~----~~~~~ 247 (496)
..+++|++||=.++ |+.+..++++....| .|+++|.++.+++.+ +.+|++.+.-...+...+. ... .
T Consensus 189 ~~~~~g~~VlV~G~--G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a----~~lGa~~~i~~~~~~~~~~~~v~~~~-~ 261 (378)
T PLN02827 189 ADVSKGSSVVIFGL--GTVGLSVAQGAKLRGASQIIGVDINPEKAEKA----KTFGVTDFINPNDLSEPIQQVIKRMT-G 261 (378)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH----HHcCCcEEEcccccchHHHHHHHHHh-C
Confidence 34678999998864 666655544433223 588999999887655 4578754321111001111 111 1
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC-cEEEEEe
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG-GYIVYST 312 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpG-G~LVYST 312 (496)
+.+|.||- |+|.. ..+..+++++ ++| |++|..-
T Consensus 262 ~g~d~vid---~~G~~-------------------------~~~~~~l~~l----~~g~G~iv~~G 295 (378)
T PLN02827 262 GGADYSFE---CVGDT-------------------------GIATTALQSC----SDGWGLTVTLG 295 (378)
T ss_pred CCCCEEEE---CCCCh-------------------------HHHHHHHHhh----ccCCCEEEEEC
Confidence 36998873 66642 1356677776 898 9997543
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=86.26 E-value=5.9 Score=42.44 Aligned_cols=117 Identities=14% Similarity=0.193 Sum_probs=73.4
Q ss_pred CCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHc---CC----------CeEEEEecCCCCCccccCCCCcCEE
Q 010971 188 APGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRM---GV----------TNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 188 gpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~---g~----------~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
|-|..++.+|..+...| .|+++|+++.+++.+..--... +. ..... ..|+ ..+ ...|++
T Consensus 16 GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra-Ttd~----~~l--~~~dv~ 88 (436)
T COG0677 16 GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA-TTDP----EEL--KECDVF 88 (436)
T ss_pred ccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE-ecCh----hhc--ccCCEE
Confidence 56667777776655444 8999999999998875321100 00 00111 0111 112 357777
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~ 331 (496)
++=+|---.+ .++|++. .+.+|++.+.+.|++|-.+|+ ..|..|--.|+++..+|+..
T Consensus 89 iI~VPTPl~~--~~~pDls-----------------~v~~aa~sIa~~L~kG~LVIl-EST~~PGTTe~v~~plle~~ 146 (436)
T COG0677 89 IICVPTPLKK--YREPDLS-----------------YVESAARSIAPVLKKGDLVIL-ESTTPPGTTEEVVKPLLEER 146 (436)
T ss_pred EEEecCCcCC--CCCCChH-----------------HHHHHHHHHHHhcCCCCEEEE-ecCCCCCcHHHHHHHHHhhc
Confidence 7765533333 2667653 367777888888899665554 67788999999999999873
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.11 E-value=16 Score=35.08 Aligned_cols=80 Identities=11% Similarity=0.174 Sum_probs=50.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEE-EeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYA-NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A-~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~ 247 (496)
+|.+||=.| |+|+.+.+++..+...| .|+. .+.+......+...++..+. ++.++..|..+.... + ..
T Consensus 3 ~~~~vlItG-a~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 3 SGKVALVTG-SSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGR-KALAVKANVGDVEKIKEMFAQIDEEF 80 (250)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 355677444 56888988887765445 5554 46677777777777766653 466667887654211 1 11
Q ss_pred CCcCEEEECCCC
Q 010971 248 NTVDRVLLDAPC 259 (496)
Q Consensus 248 ~~fD~VLlDaPC 259 (496)
+..|.|+..+..
T Consensus 81 ~~id~vi~~ag~ 92 (250)
T PRK08063 81 GRLDVFVNNAAS 92 (250)
T ss_pred CCCCEEEECCCC
Confidence 468999987643
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=86.11 E-value=1.2 Score=47.27 Aligned_cols=79 Identities=19% Similarity=0.180 Sum_probs=59.7
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCc
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~f 250 (496)
......++..++|++||-|+-+.+++..- ...++++|.+.-.+.+........++.+ -.++..|....| +.++.|
T Consensus 104 l~~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~--fedn~f 179 (364)
T KOG1269|consen 104 LRESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP--FEDNTF 179 (364)
T ss_pred HhhcCcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC--CCcccc
Confidence 33345677899999999999999998763 3578999999999988888887777765 233556666554 345789
Q ss_pred CEEE
Q 010971 251 DRVL 254 (496)
Q Consensus 251 D~VL 254 (496)
|.|-
T Consensus 180 d~v~ 183 (364)
T KOG1269|consen 180 DGVR 183 (364)
T ss_pred CcEE
Confidence 9874
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.05 E-value=13 Score=35.96 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=52.5
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----C
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----G 246 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~ 246 (496)
..++.+||-.|+. |+.+.+++..+-. ...|++++.++..+..+.....+. ++.++..|..+.... + .
T Consensus 8 ~~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (264)
T PRK12829 8 PLDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA---KVTATVADVADPAQVERVFDTAVER 83 (264)
T ss_pred ccCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC---ceEEEEccCCCHHHHHHHHHHHHHH
Confidence 3467889977764 8888888776543 347999999988777665555432 566777887754321 1 0
Q ss_pred CCCcCEEEECCC
Q 010971 247 LNTVDRVLLDAP 258 (496)
Q Consensus 247 ~~~fD~VLlDaP 258 (496)
.+.+|.|+..+.
T Consensus 84 ~~~~d~vi~~ag 95 (264)
T PRK12829 84 FGGLDVLVNNAG 95 (264)
T ss_pred hCCCCEEEECCC
Confidence 146899988654
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.00 E-value=15 Score=37.92 Aligned_cols=126 Identities=16% Similarity=0.167 Sum_probs=73.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.+..||=.| |+||.+..++..+.. ...|+.++.+..+++.+...+...|. ++.++..|..+..... ..+
T Consensus 7 ~~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 455666555 567888888775543 34899999999999988888887775 4666777876642211 125
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHH----HHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYL----QKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~l----Q~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.+|.++..+-.+..+.+ ...+.+++...... ...+...++..+.. ..+|.||+.+..
T Consensus 85 ~iD~lInnAg~~~~~~~-------~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~--~~~g~iV~isS~ 145 (334)
T PRK07109 85 PIDTWVNNAMVTVFGPF-------EDVTPEEFRRVTEVTYLGVVHGTLAALRHMRP--RDRGAIIQVGSA 145 (334)
T ss_pred CCCEEEECCCcCCCCch-------hhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh--cCCcEEEEeCCh
Confidence 78999886543222211 12334444332211 23344455554411 235888875443
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.95 E-value=14 Score=35.89 Aligned_cols=81 Identities=15% Similarity=0.221 Sum_probs=54.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.+..||=.| |+|+.+.+++..+-.. ..|+..+.+...+..+...+...+. .+.++..|..+..... ..+
T Consensus 8 ~~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 8 AGKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGI-KAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 355676555 5678888888766543 4888999999888888777776553 4556677876542110 125
Q ss_pred CcCEEEECCCCC
Q 010971 249 TVDRVLLDAPCS 260 (496)
Q Consensus 249 ~fD~VLlDaPCS 260 (496)
.+|.|+..+-..
T Consensus 86 ~id~vi~~ag~~ 97 (254)
T PRK08085 86 PIDVLINNAGIQ 97 (254)
T ss_pred CCCEEEECCCcC
Confidence 689999866443
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=85.79 E-value=1.7 Score=41.53 Aligned_cols=118 Identities=15% Similarity=0.221 Sum_probs=62.6
Q ss_pred CCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHH------------HHHcC-CCeEEEEecCCCCCccccCCCCcCEE
Q 010971 188 APGGKTTYIAALMKNTG-LIYANEMKASRLKSLTAN------------LHRMG-VTNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 188 gpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~n------------l~r~g-~~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
|.|-.++.+|..+...| .|+++|+++.++..+.+- +++.. ..+..+. .|.. ... ...|.|
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~---~ai--~~adv~ 80 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIE---EAI--KDADVV 80 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHH---HHH--HH-SEE
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhh---hhh--hccceE
Confidence 55666666666555455 899999999999887632 22221 1233332 2221 111 457888
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~ 331 (496)
++-.|+=-.+ ...|+.. .+.+|++.+..++++ |.+|.--+|+.|--.++++..+|++.
T Consensus 81 ~I~VpTP~~~--~~~~Dls-----------------~v~~a~~~i~~~l~~-~~lvV~~STvppGtt~~~~~~ile~~ 138 (185)
T PF03721_consen 81 FICVPTPSDE--DGSPDLS-----------------YVESAIESIAPVLRP-GDLVVIESTVPPGTTEELLKPILEKR 138 (185)
T ss_dssp EE----EBET--TTSBETH-----------------HHHHHHHHHHHHHCS-CEEEEESSSSSTTHHHHHHHHHHHHH
T ss_pred EEecCCCccc--cCCccHH-----------------HHHHHHHHHHHHHhh-cceEEEccEEEEeeehHhhhhhhhhh
Confidence 8866532111 1222321 244444444444577 55556678888888888999999864
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.74 E-value=21 Score=35.12 Aligned_cols=79 Identities=9% Similarity=0.061 Sum_probs=51.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c----CCCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L----GLNT 249 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~----~~~~ 249 (496)
.|.++|=.| |+||.+..++..+-. ...|+.++.+...++.+.+.+....-.++.++..|..+.... + ..+.
T Consensus 7 ~~k~~lItG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 7 SGKLAFTTA-SSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCCEEEEeC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 355666555 556778877776543 348999999999988888777654223566777887764211 1 1256
Q ss_pred cCEEEECC
Q 010971 250 VDRVLLDA 257 (496)
Q Consensus 250 fD~VLlDa 257 (496)
+|.++..+
T Consensus 86 iD~lv~na 93 (263)
T PRK08339 86 PDIFFFST 93 (263)
T ss_pred CcEEEECC
Confidence 89888754
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.64 E-value=18 Score=36.04 Aligned_cols=78 Identities=15% Similarity=0.063 Sum_probs=47.3
Q ss_pred CCCeEeeccCCC-chHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAP-GGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgp-GgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|..+|-.|++. +|.+..+|..+-.. ..|+.++.+....+.+.+....+|. ..++..|..+..... ..
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~--~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGS--DFVLPCDVEDIASVDAVFEALEKKW 83 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCC--ceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 467888888876 47888777766433 4777777765444444444444453 235667877642110 12
Q ss_pred CCcCEEEECC
Q 010971 248 NTVDRVLLDA 257 (496)
Q Consensus 248 ~~fD~VLlDa 257 (496)
+.+|.++.+|
T Consensus 84 g~iD~lVnnA 93 (271)
T PRK06505 84 GKLDFVVHAI 93 (271)
T ss_pred CCCCEEEECC
Confidence 6789888765
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.53 E-value=14 Score=35.32 Aligned_cols=127 Identities=13% Similarity=0.029 Sum_probs=69.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCC-HHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMK-ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s-~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.+.+||-.|| .|+.+.+++..+. ....|++++.+ ...+..+...+...+-.++.++..|.++..... ..
T Consensus 5 ~~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK09135 5 SAKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAF 83 (249)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3567887775 6888888887654 33488888874 455666655555544445777788887643221 01
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
+..|.|+.-+.....+.+.. ..+..-...+.....-...|+..++..+. +.+|.+++.
T Consensus 84 ~~~d~vi~~ag~~~~~~~~~---~~~~~~~~~~~~n~~g~~~l~~~~~~~~~---~~~~~~~~~ 141 (249)
T PRK09135 84 GRLDALVNNASSFYPTPLGS---ITEAQWDDLFASNLKAPFFLSQAAAPQLR---KQRGAIVNI 141 (249)
T ss_pred CCCCEEEECCCCCCCCChhh---CCHHHHHHHHHHhchhHHHHHHHHHHHHh---hCCeEEEEE
Confidence 45799988553222211111 00100011222333445557777766551 446666654
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=85.43 E-value=4.2 Score=42.36 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=59.0
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---cCCC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LGLN 248 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g--~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~~~~ 248 (496)
..+++|++||=.++ |+.+..++++.+..| .|+++|.++.|++.+. .+|+..+ ++.+...+... ...+
T Consensus 187 ~~i~~g~~VlV~G~--G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~----~~Ga~~~--i~~~~~~~~~~i~~~~~~ 258 (371)
T cd08281 187 AGVRPGQSVAVVGL--GGVGLSALLGAVAAGASQVVAVDLNEDKLALAR----ELGATAT--VNAGDPNAVEQVRELTGG 258 (371)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH----HcCCceE--eCCCchhHHHHHHHHhCC
Confidence 34678999998765 555554444433223 6999999999987664 4777543 22221121111 1123
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
.+|+||- |+|.+ ..+..+++++ ++||++|...
T Consensus 259 g~d~vid---~~G~~-------------------------~~~~~~~~~l----~~~G~iv~~G 290 (371)
T cd08281 259 GVDYAFE---MAGSV-------------------------PALETAYEIT----RRGGTTVTAG 290 (371)
T ss_pred CCCEEEE---CCCCh-------------------------HHHHHHHHHH----hcCCEEEEEc
Confidence 6898874 55532 1356677776 9999987543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=85.43 E-value=16 Score=34.84 Aligned_cols=79 Identities=10% Similarity=0.083 Sum_probs=52.2
Q ss_pred CCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~ 249 (496)
+.+||=.| |+|+.+.+++..+.. ...|++++.+...+..+...+...+. ++.+...|..+.... + ..+.
T Consensus 6 ~~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (251)
T PRK12826 6 GRVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGG-KARARQVDVRDRAALKAAVAAGVEDFGR 83 (251)
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 56788555 468888887765433 34899999998888777777765543 467777787653211 1 1136
Q ss_pred cCEEEECCCC
Q 010971 250 VDRVLLDAPC 259 (496)
Q Consensus 250 fD~VLlDaPC 259 (496)
+|.|+..+..
T Consensus 84 ~d~vi~~ag~ 93 (251)
T PRK12826 84 LDILVANAGI 93 (251)
T ss_pred CCEEEECCCC
Confidence 8999887643
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.31 E-value=14 Score=35.98 Aligned_cols=79 Identities=14% Similarity=0.157 Sum_probs=52.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccc---c-----CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~---~-----~~ 247 (496)
.|.+||-.|+ +||.+.+++..+-. ...|+.++.+...++.+...+...+. .++.++..|..+.... + ..
T Consensus 6 ~~k~vlVtGa-s~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 6 AGKVALVTGA-AQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 3567776665 57788888776543 34899999999988888877765321 2466777887654211 1 12
Q ss_pred CCcCEEEECC
Q 010971 248 NTVDRVLLDA 257 (496)
Q Consensus 248 ~~fD~VLlDa 257 (496)
+.+|.++..+
T Consensus 85 g~id~li~~a 94 (260)
T PRK07063 85 GPLDVLVNNA 94 (260)
T ss_pred CCCcEEEECC
Confidence 5789998855
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=85.25 E-value=12 Score=36.04 Aligned_cols=76 Identities=12% Similarity=0.156 Sum_probs=50.2
Q ss_pred CCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCCcCEEEECC
Q 010971 187 AAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTVDRVLLDA 257 (496)
Q Consensus 187 AgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~fD~VLlDa 257 (496)
.|.|+.+.+++..+-. ...|+.++.+..++..+...+...+. ++.++..|..+..... ..+..|.|+..+
T Consensus 7 G~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~a 85 (254)
T TIGR02415 7 GGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGG-KAVAYKLDVSDKDQVFSAIDQAAEKFGGFDVMVNNA 85 (254)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3568888888766533 34888999998888877777766654 4667778876532111 114679999877
Q ss_pred CCCCCC
Q 010971 258 PCSGTG 263 (496)
Q Consensus 258 PCSg~G 263 (496)
.....+
T Consensus 86 g~~~~~ 91 (254)
T TIGR02415 86 GVAPIT 91 (254)
T ss_pred CcCCCC
Confidence 654433
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=85.19 E-value=5.4 Score=41.73 Aligned_cols=77 Identities=14% Similarity=0.223 Sum_probs=37.6
Q ss_pred CCeEeeccCCCchHHHHHHHHc--------CCC-------cEEEEEeCCHHHHHHHHHHHHHc-----CCCeEEEEecCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALM--------KNT-------GLIYANEMKASRLKSLTANLHRM-----GVTNTIVCNYDG 238 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~--------~~~-------g~V~A~D~s~~rl~~l~~nl~r~-----g~~nv~v~~~D~ 238 (496)
--+|+|+||+.|..|+.+.+.+ ... -.|+-+|+=..=...+-..+... ...++-+.-.-+
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpg 96 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPG 96 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCc
Confidence 4589999999999998655432 112 27888886433333333333222 123443333233
Q ss_pred CCCccccCCCCcCEEEE
Q 010971 239 NELPKVLGLNTVDRVLL 255 (496)
Q Consensus 239 ~~~~~~~~~~~fD~VLl 255 (496)
..+...++.++.|.+..
T Consensus 97 SFy~rLfP~~Svh~~~S 113 (334)
T PF03492_consen 97 SFYGRLFPSNSVHFGHS 113 (334)
T ss_dssp -TTS--S-TT-EEEEEE
T ss_pred hhhhccCCCCceEEEEE
Confidence 33455556678888864
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=85.17 E-value=12 Score=36.08 Aligned_cols=78 Identities=14% Similarity=0.209 Sum_probs=50.9
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHH-cCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHR-MGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r-~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
|.+||=.| |+|+.+.+++..+... ..|+..+.++..+..+...+.. .+-..+.++..|..+.... + ..+
T Consensus 4 ~k~vlItG-as~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 82 (256)
T PRK09186 4 GKTILITG-AGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG 82 (256)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 55666555 5688898888776544 4888889998888777766643 3434455667787653211 1 114
Q ss_pred CcCEEEECC
Q 010971 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~fD~VLlDa 257 (496)
..|.|+..|
T Consensus 83 ~id~vi~~A 91 (256)
T PRK09186 83 KIDGAVNCA 91 (256)
T ss_pred CccEEEECC
Confidence 589999876
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.83 E-value=19 Score=35.89 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=52.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.|+ +||.+.+++..+... ..|+..|.+...+..+...+...|. .+.++..|..+..... ..+
T Consensus 5 ~~k~vlVTGa-s~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 5 PGRGAVITGG-ASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 3566775554 577888888765433 4788899999888887777766554 4666777876643211 124
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
..|.|+..|-
T Consensus 83 ~id~li~nAg 92 (275)
T PRK05876 83 HVDVVFSNAG 92 (275)
T ss_pred CCCEEEECCC
Confidence 6899988664
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.70 E-value=10 Score=38.19 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=49.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||-.| |+||.+.+++..+... ..|+.++.+..+++.+...+.. + ..+..+..|..+..... ..+
T Consensus 8 ~gk~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 8 AGKVVVVTG-AARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-D-DRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-C-CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 467787555 5677888888766433 4888999999887776655431 2 23445557776532110 125
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
.+|.|+..+-
T Consensus 85 ~id~vI~nAG 94 (296)
T PRK05872 85 GIDVVVANAG 94 (296)
T ss_pred CCCEEEECCC
Confidence 7899998664
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.54 E-value=12 Score=36.25 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=53.7
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.|+ +||.+.+++..+-.. ..|+.++.+...++.+...+...+ .++.++..|..+..... ..+
T Consensus 8 ~~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGA-STGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4667776665 567777777765433 488899999998888888777666 34666778876542110 125
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
.+|.++..+-
T Consensus 86 ~id~lv~~ag 95 (253)
T PRK05867 86 GIDIAVCNAG 95 (253)
T ss_pred CCCEEEECCC
Confidence 7899988653
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.50 E-value=15 Score=35.40 Aligned_cols=80 Identities=14% Similarity=0.194 Sum_probs=51.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.+.+||= .-|+|+.+.+++..+-.. ..|+..+.+...+..+...+...+. ++.++..|..+..... ..+
T Consensus 5 ~~k~vlI-tGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 5 DDKVAIV-TGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGG-TAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCCEEEE-ECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 3556664 447788898888765433 4899999988777776666654332 4556677877643210 014
Q ss_pred CcCEEEECCCC
Q 010971 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~fD~VLlDaPC 259 (496)
.+|.|+..+..
T Consensus 83 ~id~vi~~ag~ 93 (250)
T PRK07774 83 GIDYLVNNAAI 93 (250)
T ss_pred CCCEEEECCCC
Confidence 68999986643
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.44 E-value=17 Score=35.46 Aligned_cols=76 Identities=12% Similarity=0.163 Sum_probs=46.5
Q ss_pred CCCeEeeccCCC-chHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAP-GGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgp-GgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|.+||-.|++. +|.+..++..+-.. ..|+.++.+. +... .++.+.-..+.++..|..+..... ..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~---~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKK---SLQKLVDEEDLLVECDVASDESIERAFATIKERV 81 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHH---HHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence 467888888875 68888888766433 4788887763 3322 223322234667778886532110 12
Q ss_pred CCcCEEEECC
Q 010971 248 NTVDRVLLDA 257 (496)
Q Consensus 248 ~~fD~VLlDa 257 (496)
+.+|.++.+|
T Consensus 82 g~iD~lv~nA 91 (252)
T PRK06079 82 GKIDGIVHAI 91 (252)
T ss_pred CCCCEEEEcc
Confidence 5789988866
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=84.37 E-value=3.6 Score=41.33 Aligned_cols=73 Identities=18% Similarity=0.101 Sum_probs=49.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
+..+|||++||-=-.++....... ....+|.|++...++.+..-+..+|+.. .+...|...-+ +....|+.|+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~-~a~Y~a~DID~~~ve~l~~~l~~l~~~~-~~~v~Dl~~~~---~~~~~DlaLl 177 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAP-GATYIAYDIDSQLVEFLNAFLAVLGVPH-DARVRDLLSDP---PKEPADLALL 177 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSST-T-EEEEEESBHHHHHHHHHHHHHTT-CE-EEEEE-TTTSH---TTSEESEEEE
T ss_pred CCchhhhhhccCCceehhhcccCC-CcEEEEEeCCHHHHHHHHHHHHhhCCCc-ceeEeeeeccC---CCCCcchhhH
Confidence 368999999998877764443322 3589999999999999999999999864 23334554322 1256899987
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.31 E-value=29 Score=33.80 Aligned_cols=80 Identities=16% Similarity=0.098 Sum_probs=52.7
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|..+|=.| |+||.+.+++..+. ....|++++.+..++..+...+....- .++.++..|..+..... ..
T Consensus 7 ~~k~~lItG-as~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 7 EGRVAVVTG-GSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 366777666 45667777776653 335899999999988887776655422 35667777877643211 12
Q ss_pred CCcCEEEECCC
Q 010971 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~fD~VLlDaP 258 (496)
+.+|.|+..|-
T Consensus 86 g~id~li~~Ag 96 (265)
T PRK07062 86 GGVDMLVNNAG 96 (265)
T ss_pred CCCCEEEECCC
Confidence 56899988653
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.21 E-value=14 Score=35.83 Aligned_cols=79 Identities=9% Similarity=0.123 Sum_probs=50.7
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEecCCCCCcccc--------CCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRM-GVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~-g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
+..||=.| |.|+.+.+++..+... ..|+.+|.+...++.+...+... +-.++.++..|..+..... ..+
T Consensus 2 ~k~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 34567666 4577888777665433 48899999988887776665442 3235777788877532111 114
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
..|.|+..+-
T Consensus 81 ~id~vv~~ag 90 (259)
T PRK12384 81 RVDLLVYNAG 90 (259)
T ss_pred CCCEEEECCC
Confidence 6899888653
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.17 E-value=17 Score=35.09 Aligned_cols=77 Identities=19% Similarity=0.119 Sum_probs=51.1
Q ss_pred CeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--CCCCcCEEEEC
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--GLNTVDRVLLD 256 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--~~~~fD~VLlD 256 (496)
.+||=. .|+|+.+.+++..+.. ...|++.+.+...+..+.......+. .+.++..|..+..... .....|.|+..
T Consensus 3 ~~vlVt-Gasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILIT-GAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEe-CCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 356644 4578888888876543 34899999888888777776666654 3666777876542221 12379999986
Q ss_pred CC
Q 010971 257 AP 258 (496)
Q Consensus 257 aP 258 (496)
+-
T Consensus 81 ag 82 (257)
T PRK09291 81 AG 82 (257)
T ss_pred CC
Confidence 53
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.08 E-value=11 Score=36.59 Aligned_cols=74 Identities=19% Similarity=0.159 Sum_probs=48.1
Q ss_pred eEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc-------C--CCCc
Q 010971 181 RVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------G--LNTV 250 (496)
Q Consensus 181 ~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~-------~--~~~f 250 (496)
+||-.| |+|+.+..++..+...| .|++++.+...+..+...+. -.++.++..|..+..... . .+.+
T Consensus 3 ~vlItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i 78 (260)
T PRK08267 3 SIFITG-AASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG---AGNAWTGALDVTDRAAWDAALADFAAATGGRL 78 (260)
T ss_pred EEEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---CCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 345444 56788888877654444 88999999888777755543 235677788887643211 0 3578
Q ss_pred CEEEECCC
Q 010971 251 DRVLLDAP 258 (496)
Q Consensus 251 D~VLlDaP 258 (496)
|.|+..+-
T Consensus 79 d~vi~~ag 86 (260)
T PRK08267 79 DVLFNNAG 86 (260)
T ss_pred CEEEECCC
Confidence 99998554
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.85 E-value=2.2 Score=43.93 Aligned_cols=123 Identities=20% Similarity=0.201 Sum_probs=83.7
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc--CC--CeEEEEecCCCCCccccCCCCcCEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--GV--TNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~--g~--~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
.-..||=++-|-||..-..+.. +.-+.|+-+|++..-++.-++-+..+ |. ..|.+..+|+..|-+..+.+.||+|
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 3468999999999976544333 33467899999998888877766655 33 3477888899888666666899999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~ 329 (496)
++|-. +|. ...++..|+....-..+.| |+||+++. . .|+..+-..+++
T Consensus 200 i~dss---------dpv---------gpa~~lf~~~~~~~v~~aL----k~dgv~~~----q--~ec~wl~~~~i~ 247 (337)
T KOG1562|consen 200 ITDSS---------DPV---------GPACALFQKPYFGLVLDAL----KGDGVVCT----Q--GECMWLHLDYIK 247 (337)
T ss_pred EEecC---------Ccc---------chHHHHHHHHHHHHHHHhh----CCCcEEEE----e--cceehHHHHHHH
Confidence 99842 111 2234556666666555554 99999843 2 466666555554
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.50 E-value=23 Score=35.21 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=50.7
Q ss_pred eEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c----CCCCcCEE
Q 010971 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L----GLNTVDRV 253 (496)
Q Consensus 181 ~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~----~~~~fD~V 253 (496)
.||=.|| ||.+.+++..+.....|+.+|.+...++.+.+.+...|. ++.++..|..+.... + ..+.+|.|
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l 80 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSSRESVKALAATAQTLGPVTGL 80 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence 4454443 689999998886545899999998888777776665553 456667787654211 1 12568999
Q ss_pred EECCC
Q 010971 254 LLDAP 258 (496)
Q Consensus 254 LlDaP 258 (496)
+..|-
T Consensus 81 i~nAG 85 (275)
T PRK06940 81 VHTAG 85 (275)
T ss_pred EECCC
Confidence 88663
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=83.46 E-value=5.4 Score=40.52 Aligned_cols=113 Identities=17% Similarity=0.169 Sum_probs=63.7
Q ss_pred CeEeeccCCC--chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCC----CCcC--
Q 010971 180 ERVIDMAAAP--GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL----NTVD-- 251 (496)
Q Consensus 180 ~~VLDmcAgp--GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~----~~fD-- 251 (496)
...||+|||- -+.+-.+|+...+...|+-+|.++--+...+..+....-..+.++.+|.+.....+.. +.+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 5799999993 3456678888888899999999999998888888765433478999999886544421 1122
Q ss_pred ---EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 252 ---RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 252 ---~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.||+ .|++---|+ .++. ..++..-.+.| .||.+|+.|..+-
T Consensus 150 rPVavll------~~vLh~v~D------~~dp-------~~iv~~l~d~l----apGS~L~ish~t~ 193 (267)
T PF04672_consen 150 RPVAVLL------VAVLHFVPD------DDDP-------AGIVARLRDAL----APGSYLAISHATD 193 (267)
T ss_dssp S--EEEE------CT-GGGS-C------GCTH-------HHHHHHHHCCS-----TT-EEEEEEEB-
T ss_pred CCeeeee------eeeeccCCC------ccCH-------HHHHHHHHHhC----CCCceEEEEecCC
Confidence 2333 123221111 1111 33566666665 9999999998764
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=83.40 E-value=16 Score=37.09 Aligned_cols=76 Identities=12% Similarity=0.081 Sum_probs=50.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.| |+||.+.+++..+... ..|++++.+..++..+...+. ++.++..|..+..... ..+
T Consensus 25 ~~k~vlITG-asggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-----~v~~~~~Dl~d~~~v~~~~~~~~~~~~ 98 (315)
T PRK06196 25 SGKTAIVTG-GYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-----GVEVVMLDLADLESVRAFAERFLDSGR 98 (315)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----hCeEEEccCCCHHHHHHHHHHHHhcCC
Confidence 356777555 5688888888765433 488899999888776655543 2556777877643210 125
Q ss_pred CcCEEEECCCC
Q 010971 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~fD~VLlDaPC 259 (496)
..|.|+..|..
T Consensus 99 ~iD~li~nAg~ 109 (315)
T PRK06196 99 RIDILINNAGV 109 (315)
T ss_pred CCCEEEECCCC
Confidence 78999997753
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.32 E-value=6.4 Score=40.78 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=35.5
Q ss_pred cCCCCCCeEeeccC--CCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeE
Q 010971 174 LAPQEKERVIDMAA--APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231 (496)
Q Consensus 174 L~~~~g~~VLDmcA--gpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv 231 (496)
..+++|++||=.+| +-|..++++|..++ ..|++.+.+..+++.+.. .+|.+.+
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~---~lGa~~v 208 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKN---KLGFDEA 208 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH---hcCCCEE
Confidence 35788999987766 24445556666653 468999999888765532 3677543
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=83.26 E-value=16 Score=39.11 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=15.8
Q ss_pred CCeEeeccCCCchHHHHHH
Q 010971 179 KERVIDMAAAPGGKTTYIA 197 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA 197 (496)
.-.|+|+|||+|..|+.+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~v 82 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHII 82 (386)
T ss_pred ceeEEEecCCCCccHHHHH
Confidence 4589999999999987543
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.12 E-value=22 Score=34.42 Aligned_cols=78 Identities=12% Similarity=0.156 Sum_probs=51.0
Q ss_pred CeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCCc
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTV 250 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~f 250 (496)
.+||-.| |.|+.+.+++..+... ..|++++.+..+++.+...+...+ .++.++..|..+..... ..+..
T Consensus 2 k~~lItG-~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 2 KVVIITG-GSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 4566455 4666777777665433 488999999988888877776555 35667778876532110 11468
Q ss_pred CEEEECCCC
Q 010971 251 DRVLLDAPC 259 (496)
Q Consensus 251 D~VLlDaPC 259 (496)
|.|+..+.+
T Consensus 80 d~lI~~ag~ 88 (252)
T PRK07677 80 DALINNAAG 88 (252)
T ss_pred cEEEECCCC
Confidence 999886643
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.03 E-value=19 Score=34.51 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=51.5
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~ 249 (496)
+.+||-.| |+|+.+..++..+-..| .|++++.++.....+...+...+ .++.++..|..+.... + ..+.
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 44566665 57888888887664333 89999999988877777776554 3466777888764321 1 1145
Q ss_pred cCEEEECC
Q 010971 250 VDRVLLDA 257 (496)
Q Consensus 250 fD~VLlDa 257 (496)
.|.|+..+
T Consensus 84 id~lv~~a 91 (241)
T PRK07454 84 PDVLINNA 91 (241)
T ss_pred CCEEEECC
Confidence 89888743
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=82.85 E-value=5.7 Score=39.92 Aligned_cols=97 Identities=18% Similarity=0.225 Sum_probs=56.2
Q ss_pred cCCCCCCeEeeccC--CCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---cCCC
Q 010971 174 LAPQEKERVIDMAA--APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LGLN 248 (496)
Q Consensus 174 L~~~~g~~VLDmcA--gpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~~~~ 248 (496)
..+++|++||=.++ +-|..++++|..++ ..|++.+.++.+.+.++ .+|+..+. ......+... ....
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~----~~Ga~~vi--~~~~~~~~~~v~~~~~~ 210 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLK----ELGFDAVF--NYKTVSLEEALKEAAPD 210 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH----HcCCCEEE--eCCCccHHHHHHHHCCC
Confidence 45778999986653 23334444555543 37899999988877664 36875432 2222222111 1124
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.+|.|| | |+|. ..+..+++++ +++|++|..
T Consensus 211 gvd~vl-d--~~g~--------------------------~~~~~~~~~l----~~~G~iv~~ 240 (329)
T cd08294 211 GIDCYF-D--NVGG--------------------------EFSSTVLSHM----NDFGRVAVC 240 (329)
T ss_pred CcEEEE-E--CCCH--------------------------HHHHHHHHhh----ccCCEEEEE
Confidence 689887 3 3331 1256667776 999998754
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=82.84 E-value=0.74 Score=45.11 Aligned_cols=44 Identities=23% Similarity=0.312 Sum_probs=32.7
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV 228 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~ 228 (496)
...++||+|||-|-.|.+++-.. -.|+|-++|..+.. +++..+.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~----rL~kk~y 155 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRD----RLKKKNY 155 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHH----HHhhcCC
Confidence 44799999999999999887665 35888888865544 4455544
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.83 E-value=29 Score=33.61 Aligned_cols=128 Identities=12% Similarity=0.019 Sum_probs=72.1
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEecCCCCCccc---c-----CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g-~~nv~v~~~D~~~~~~~---~-----~~ 247 (496)
.|.+||-.|+ .|+.+..++..+.. ...|+.++.+...+..+..++.... -.++.++..|....... + ..
T Consensus 8 ~~k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 8 DGQTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3567776665 56777777765543 3489999999988888877776551 12466777887653211 0 12
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~----~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
+.+|.|+..+ |.+.. .| ....+.+++.... .-...++.+++..+.. .++|.||+.++..
T Consensus 87 g~id~li~~a---g~~~~--~~--~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~~~ii~~sS~~ 149 (257)
T PRK09242 87 DGLHILVNNA---GGNIR--KA--AIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQ--HASSAIVNIGSVS 149 (257)
T ss_pred CCCCEEEECC---CCCCC--CC--hhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh--cCCceEEEECccc
Confidence 5789998754 33211 11 1123344433222 1223345555544411 3468888877653
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.59 E-value=27 Score=34.64 Aligned_cols=79 Identities=15% Similarity=0.039 Sum_probs=45.2
Q ss_pred CCCeEeeccCCC-chHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAP-GGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgp-GgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|.++|=.|++. +|.+..++..+... ..|+.++.+. ++....+.+...+ ..+.++..|..+..... ..
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQL-GSDIVLPCDVAEDASIDAMFAELGKVW 82 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-hHHHHHHHHHhcc-CCceEeecCCCCHHHHHHHHHHHHhhc
Confidence 366788888887 48888777766433 4677777663 3332222332221 23445667876532110 12
Q ss_pred CCcCEEEECCC
Q 010971 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~fD~VLlDaP 258 (496)
+.+|.++..|-
T Consensus 83 g~iD~linnAg 93 (262)
T PRK07984 83 PKFDGFVHSIG 93 (262)
T ss_pred CCCCEEEECCc
Confidence 57899998763
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.58 E-value=28 Score=33.66 Aligned_cols=78 Identities=12% Similarity=0.104 Sum_probs=53.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.+.+||-.|| +|+.+..++..+.. ...|+.++.+...+..+...+...+. ++.++..|..+.... + ..+
T Consensus 6 ~~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 6 SGKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGG-EALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 3567776664 67777777765543 34899999999988888888777653 467777887653211 0 114
Q ss_pred CcCEEEECC
Q 010971 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~fD~VLlDa 257 (496)
.+|.|+..+
T Consensus 84 ~id~li~~a 92 (253)
T PRK06172 84 RLDYAFNNA 92 (253)
T ss_pred CCCEEEECC
Confidence 689998754
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.32 E-value=27 Score=35.13 Aligned_cols=80 Identities=15% Similarity=0.124 Sum_probs=52.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRM-GVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~-g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|.+|| +.-|+||.+.+++..+...| .|+.++.+..+...+...+... +-.++.++..|..+..... ..
T Consensus 15 ~~k~vl-ItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 15 SGRVAV-VTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCCEEE-EcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 466777 44567888998887654334 7888888888877666666543 2234677788887653211 12
Q ss_pred CCcCEEEECCC
Q 010971 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~fD~VLlDaP 258 (496)
+.+|.|+..|-
T Consensus 94 ~~iD~li~nAg 104 (306)
T PRK06197 94 PRIDLLINNAG 104 (306)
T ss_pred CCCCEEEECCc
Confidence 46899998663
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.28 E-value=24 Score=34.53 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=53.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.+.+||=.| |.|+.+.+++..+. ....|+.++.+...+..+...+...+. .+.+...|........ ..+
T Consensus 9 ~~~~vlItG-asggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 9 DDQVAVVTG-AGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGR-RAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 467788777 47788888887553 334899999999888888777766553 4666777876643211 014
Q ss_pred CcCEEEECC
Q 010971 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~fD~VLlDa 257 (496)
.+|.|+..|
T Consensus 87 ~id~vi~~A 95 (263)
T PRK07814 87 RLDIVVNNV 95 (263)
T ss_pred CCCEEEECC
Confidence 689888765
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.15 E-value=17 Score=36.11 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=45.2
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c------CCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L------GLN 248 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~------~~~ 248 (496)
+.+||=.| |+||.+.+++..+... ..|++.+.++..+..+.. .+ +.++..|..+.... + ..+
T Consensus 4 ~k~vlItG-asggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~~---~~~~~~Dl~d~~~~~~~~~~~~~~~~g 75 (277)
T PRK05993 4 KRSILITG-CSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----EG---LEAFQLDYAEPESIAALVAQVLELSGG 75 (277)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CC---ceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45677555 5788998888766433 489999999887765543 23 44566777653211 1 014
Q ss_pred CcCEEEECC
Q 010971 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~fD~VLlDa 257 (496)
..|.|+..+
T Consensus 76 ~id~li~~A 84 (277)
T PRK05993 76 RLDALFNNG 84 (277)
T ss_pred CccEEEECC
Confidence 689998854
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.09 E-value=25 Score=34.07 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=53.1
Q ss_pred CCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~ 249 (496)
+.+||=. .|+||.+.+++..+.. ...|+..+.++..+..+...+...+. ++.++..|..+.... + ..+.
T Consensus 6 ~k~~lIt-Gas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (254)
T PRK07478 6 GKVAIIT-GASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGG-EAVALAGDVRDEAYAKALVALAVERFGG 83 (254)
T ss_pred CCEEEEe-CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 4566644 4567788887765543 34889999999998888888877664 466667787654211 0 1247
Q ss_pred cCEEEECCCC
Q 010971 250 VDRVLLDAPC 259 (496)
Q Consensus 250 fD~VLlDaPC 259 (496)
+|.|+..|..
T Consensus 84 id~li~~ag~ 93 (254)
T PRK07478 84 LDIAFNNAGT 93 (254)
T ss_pred CCEEEECCCC
Confidence 8999987643
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.06 E-value=8 Score=40.13 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=33.7
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCeE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNT 231 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g--~V~A~D~s~~rl~~l~~nl~r~g~~nv 231 (496)
.+++|++||=.++ |+.+..++++....| .|+++|.+..+++.+ +.+|+..+
T Consensus 181 ~~~~g~~vlV~G~--g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~----~~~ga~~~ 233 (365)
T cd08277 181 KVEPGSTVAVFGL--GAVGLSAIMGAKIAGASRIIGVDINEDKFEKA----KEFGATDF 233 (365)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH----HHcCCCcE
Confidence 4678999998754 555554443332223 699999999988766 34677543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.05 E-value=20 Score=38.94 Aligned_cols=79 Identities=14% Similarity=0.104 Sum_probs=55.4
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~ 249 (496)
+.++|= -.|+||.+.+++..+...| .|+.++.+...++.+...+...|. ++.++..|..+..... ..+.
T Consensus 315 ~~~~lv-~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 392 (582)
T PRK05855 315 GKLVVV-TGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA-VAHAYRVDVSDADAMEAFAEWVRAEHGV 392 (582)
T ss_pred CCEEEE-ECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 456664 4457888888887664433 788999999998888888877665 5777788887643210 1256
Q ss_pred cCEEEECCCC
Q 010971 250 VDRVLLDAPC 259 (496)
Q Consensus 250 fD~VLlDaPC 259 (496)
+|.|+..|-.
T Consensus 393 id~lv~~Ag~ 402 (582)
T PRK05855 393 PDIVVNNAGI 402 (582)
T ss_pred CcEEEECCcc
Confidence 8999986643
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=82.03 E-value=19 Score=34.31 Aligned_cols=73 Identities=14% Similarity=0.195 Sum_probs=41.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeC-CHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-CCCCcC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-GLNTVD 251 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~-s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-~~~~fD 251 (496)
.|.+||=. .|+|+.+.+++..+...| .|+.... +...++.+.. ..++ .++..|..+.... . ..+.+|
T Consensus 5 ~~k~vlIt-GasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~---~~~~---~~~~~D~~~~~~~~~~~~~~~~id 77 (237)
T PRK12742 5 TGKKVLVL-GGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQ---ETGA---TAVQTDSADRDAVIDVVRKSGALD 77 (237)
T ss_pred CCCEEEEE-CCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHH---HhCC---eEEecCCCCHHHHHHHHHHhCCCc
Confidence 46677744 557888888888665444 6666544 4555554433 3343 3445666543211 1 124689
Q ss_pred EEEECC
Q 010971 252 RVLLDA 257 (496)
Q Consensus 252 ~VLlDa 257 (496)
.|+..+
T Consensus 78 ~li~~a 83 (237)
T PRK12742 78 ILVVNA 83 (237)
T ss_pred EEEECC
Confidence 988755
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=81.93 E-value=16 Score=32.69 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=51.8
Q ss_pred CCCchHHHHHHHHcCC--CcEEEEEeCC--HHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCCcCEEE
Q 010971 187 AAPGGKTTYIAALMKN--TGLIYANEMK--ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTVDRVL 254 (496)
Q Consensus 187 AgpGgKT~~lA~l~~~--~g~V~A~D~s--~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~fD~VL 254 (496)
.|.||.+..++..+-. ...|+.+..+ ..++..+...+...+ .++.++..|........ ..+.+|.|+
T Consensus 7 Ga~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ld~li 85 (167)
T PF00106_consen 7 GASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEEVIKRFGPLDILI 85 (167)
T ss_dssp TTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHHHHHHHSSESEEE
T ss_pred CCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence 3457777777765432 3477888888 888898888888877 77888889987642110 126799999
Q ss_pred ECCCCCCCC
Q 010971 255 LDAPCSGTG 263 (496)
Q Consensus 255 lDaPCSg~G 263 (496)
..+.....+
T Consensus 86 ~~ag~~~~~ 94 (167)
T PF00106_consen 86 NNAGIFSDG 94 (167)
T ss_dssp EECSCTTSB
T ss_pred ccccccccc
Confidence 865543333
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.90 E-value=33 Score=33.72 Aligned_cols=78 Identities=14% Similarity=0.124 Sum_probs=43.0
Q ss_pred CCCeEeeccCCCc-hHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CC
Q 010971 178 EKERVIDMAAAPG-GKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpG-gKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~ 247 (496)
.|..+|=.|++.| |.+..++..+... ..|+..+.+....+.+.+.....|.. .++..|..+.... + ..
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~--~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCN--FVSELDVTNPKSISNLFDDIKEKW 84 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCc--eEEEccCCCHHHHHHHHHHHHHHc
Confidence 3567777777765 6777777655433 46777776643222333333333432 3456777663211 0 12
Q ss_pred CCcCEEEECC
Q 010971 248 NTVDRVLLDA 257 (496)
Q Consensus 248 ~~fD~VLlDa 257 (496)
+.+|.++..+
T Consensus 85 g~iDilVnna 94 (260)
T PRK06603 85 GSFDFLLHGM 94 (260)
T ss_pred CCccEEEEcc
Confidence 6799888754
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.50 E-value=2 Score=42.77 Aligned_cols=84 Identities=15% Similarity=0.212 Sum_probs=55.2
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCe-EEEE-ecCCCC-CccccC-CCCcC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-GVTN-TIVC-NYDGNE-LPKVLG-LNTVD 251 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~-g~~n-v~v~-~~D~~~-~~~~~~-~~~fD 251 (496)
.++-++||+|.|.-..--.|...+- .=..++-|+++..+..++.++..+ ++.+ +.+. ..|... |+.... .+.||
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd 155 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYD 155 (292)
T ss_pred cCceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceee
Confidence 4577899998775543333333322 126889999999999999999887 6655 4443 233322 222222 47899
Q ss_pred EEEECCCCCC
Q 010971 252 RVLLDAPCSG 261 (496)
Q Consensus 252 ~VLlDaPCSg 261 (496)
.+||+||--+
T Consensus 156 ~tlCNPPFh~ 165 (292)
T COG3129 156 ATLCNPPFHD 165 (292)
T ss_pred eEecCCCcch
Confidence 9999999543
|
|
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.50 E-value=18 Score=36.51 Aligned_cols=146 Identities=21% Similarity=0.216 Sum_probs=88.8
Q ss_pred CCCcccccccEEE---eCCcchhH-----HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHH
Q 010971 150 GATPEYMAGFYML---QSASSFLP-----VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTA 221 (496)
Q Consensus 150 ~~~~~~~~G~~~i---Qd~sS~l~-----v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~ 221 (496)
..|-+|..|..-+ |+.-..+. +..+++ |.. |+. -||+- ..++++++....+.++|++++-...|+.
T Consensus 55 ~ktgE~~~GI~RL~~a~~lpa~l~~yl~~i~~lN~--~~~-l~~--YpGSP-~lA~~llR~qDRl~l~ELHp~D~~~L~~ 128 (279)
T COG2961 55 EKTGEYEQGIARLWQAADLPAELEPYLDAVRQLNP--GGG-LRY--YPGSP-LLARQLLREQDRLVLTELHPSDAPLLRN 128 (279)
T ss_pred hhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHhCC--CCC-ccc--CCCCH-HHHHHHcchhceeeeeecCccHHHHHHH
Confidence 3466777774333 33222222 223343 433 444 45543 2344566667799999999999999999
Q ss_pred HHHHcCCCeEEEEecCCCCCccc-c-CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhh
Q 010971 222 NLHRMGVTNTIVCNYDGNELPKV-L-GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVD 299 (496)
Q Consensus 222 nl~r~g~~nv~v~~~D~~~~~~~-~-~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~ 299 (496)
|+. +..++.+...|+..-... + +..+=-.||+|||.-- ..+...+. +-|..++...
T Consensus 129 ~f~--~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~---------------~~eY~rvv----~~l~~~~kRf- 186 (279)
T COG2961 129 NFA--GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFEL---------------KDEYQRVV----EALAEAYKRF- 186 (279)
T ss_pred HhC--CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCCccc---------------ccHHHHHH----HHHHHHHHhh-
Confidence 998 677899999998532111 1 1234568999999421 12333332 2355566654
Q ss_pred hcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhC
Q 010971 300 ANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331 (496)
Q Consensus 300 ~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~ 331 (496)
++|+. |-|.|.-+-..++.|++..
T Consensus 187 ----~~g~y----aiWYPik~r~~~~~f~~~L 210 (279)
T COG2961 187 ----ATGTY----AIWYPIKDRRQIRRFLRAL 210 (279)
T ss_pred ----cCceE----EEEEeecchHHHHHHHHHH
Confidence 45654 3478888888999888763
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.47 E-value=7.9 Score=40.36 Aligned_cols=50 Identities=20% Similarity=0.285 Sum_probs=34.1
Q ss_pred cCCCCCCeEeeccCCCchHHHH---HHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe
Q 010971 174 LAPQEKERVIDMAAAPGGKTTY---IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~---lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n 230 (496)
..+++|++||=.++ |+.+.. +|..++ ...|+++|.++.|++.+ +++|...
T Consensus 181 ~~~~~g~~VlV~G~--G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a----~~~Ga~~ 233 (368)
T TIGR02818 181 AKVEEGDTVAVFGL--GGIGLSVIQGARMAK-ASRIIAIDINPAKFELA----KKLGATD 233 (368)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHH----HHhCCCe
Confidence 35678999998865 555544 444442 12699999999998766 4478754
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.19 E-value=14 Score=36.41 Aligned_cols=72 Identities=14% Similarity=0.262 Sum_probs=45.9
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~ 249 (496)
+..|| +..|+|+.+.+++..+...| .|++++.+..+++.+.. . ++.++..|..+.... + ..+.
T Consensus 3 ~k~vl-ItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~----~---~~~~~~~Dv~~~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 3 KKVAL-VTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS----L---GVHPLSLDVTDEASIKAAVDTIIAEEGR 74 (273)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----C---CCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 45666 44467888998888764434 89999999887765432 2 345666777654221 1 1247
Q ss_pred cCEEEECCC
Q 010971 250 VDRVLLDAP 258 (496)
Q Consensus 250 fD~VLlDaP 258 (496)
+|.|+..+.
T Consensus 75 id~li~~ag 83 (273)
T PRK06182 75 IDVLVNNAG 83 (273)
T ss_pred CCEEEECCC
Confidence 899988653
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.18 E-value=30 Score=33.61 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=53.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.+.+||=.| |.|+.+.+++..+...| .|+..+.+..++..+...+...+. .+.++..|..+..... ..+
T Consensus 10 ~~k~vlVtG-~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 10 DGKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFALSKLG 87 (255)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 367788777 55777777776554333 788889898888888777776654 4566678877643211 125
Q ss_pred CcCEEEECCCC
Q 010971 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~fD~VLlDaPC 259 (496)
.+|.|+..+..
T Consensus 88 ~~d~li~~ag~ 98 (255)
T PRK06113 88 KVDILVNNAGG 98 (255)
T ss_pred CCCEEEECCCC
Confidence 68999886543
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.18 E-value=20 Score=34.42 Aligned_cols=80 Identities=10% Similarity=0.121 Sum_probs=51.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC-----cccc-----C
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-----PKVL-----G 246 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~-----~~~~-----~ 246 (496)
.|.+||-.| |.|+.+.+++..+.. ...|++++.++.++..+...+...+-..+.++..|.... .... .
T Consensus 5 ~~k~vlItG-~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 5 SDKTILVTG-ASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence 456777676 577888888876543 348999999999988887777665543444455554321 1100 0
Q ss_pred C-CCcCEEEECCC
Q 010971 247 L-NTVDRVLLDAP 258 (496)
Q Consensus 247 ~-~~fD~VLlDaP 258 (496)
. +.+|.|+..+-
T Consensus 84 ~~~~id~vi~~ag 96 (239)
T PRK08703 84 TQGKLDGIVHCAG 96 (239)
T ss_pred hCCCCCEEEEecc
Confidence 1 46799988653
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.98 E-value=22 Score=35.80 Aligned_cols=77 Identities=18% Similarity=0.256 Sum_probs=51.8
Q ss_pred CCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~ 249 (496)
|.+||=.| |+||.+.+++..+.. ...|++++.+..+++.+.+.+...+. .+.++..|..+.... + ..+.
T Consensus 40 ~k~vlItG-asggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 117 (293)
T PRK05866 40 GKRILLTG-ASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGG-DAMAVPCDLSDLDAVDALVADVEKRIGG 117 (293)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45666444 568888888876533 34899999999998888887776654 355677787653211 1 1247
Q ss_pred cCEEEECC
Q 010971 250 VDRVLLDA 257 (496)
Q Consensus 250 fD~VLlDa 257 (496)
.|.|+..|
T Consensus 118 id~li~~A 125 (293)
T PRK05866 118 VDILINNA 125 (293)
T ss_pred CCEEEECC
Confidence 89999843
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=80.94 E-value=20 Score=34.78 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=49.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc-------c-CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-------L-GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~-------~-~~~ 248 (496)
.|.+||=.| |+|+.+.+++..+... ..|+.+|.++.+...+... .+ .++.++..|..+.... . ..+
T Consensus 9 ~~k~vlItG-~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~---~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 83 (255)
T PRK05717 9 NGRVALVTG-AARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKA---LG-ENAWFIAMDVADEAQVAAGVAEVLGQFG 83 (255)
T ss_pred CCCEEEEeC-CcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHH---cC-CceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 366777555 4588888888776433 4899999888776554333 33 2466778888764221 0 114
Q ss_pred CcCEEEECCCC
Q 010971 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~fD~VLlDaPC 259 (496)
.+|.|+..+..
T Consensus 84 ~id~li~~ag~ 94 (255)
T PRK05717 84 RLDALVCNAAI 94 (255)
T ss_pred CCCEEEECCCc
Confidence 68999987654
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=80.81 E-value=9.2 Score=41.26 Aligned_cols=89 Identities=10% Similarity=0.087 Sum_probs=56.5
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.+|.+|+=+|+|+=|..+.......+ ..|+.+|.++.|+..+. .+|+..+ . +.... ..+|+|+.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~G-a~ViV~d~d~~R~~~A~----~~G~~~~---~-----~~e~v--~~aDVVI~- 263 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQG-ARVIVTEVDPICALQAA----MEGYEVM---T-----MEEAV--KEGDIFVT- 263 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECChhhHHHHH----hcCCEEc---c-----HHHHH--cCCCEEEE-
Confidence 57999999999986665543333223 47888999999976554 4676322 1 11222 46899875
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHH-HHhhhhcCCCCcEEEEEe
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAA-IDMVDANSKSGGYIVYST 312 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A-~~~l~~~lkpGG~LVYST 312 (496)
|+|.. .++..+ +..+ ++||+|+...
T Consensus 264 --atG~~-------------------------~~i~~~~l~~m----k~GgilvnvG 289 (413)
T cd00401 264 --TTGNK-------------------------DIITGEHFEQM----KDGAIVCNIG 289 (413)
T ss_pred --CCCCH-------------------------HHHHHHHHhcC----CCCcEEEEeC
Confidence 55431 134444 5555 9999998765
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.53 E-value=5.3 Score=44.12 Aligned_cols=18 Identities=33% Similarity=0.589 Sum_probs=14.3
Q ss_pred EeeccCCCchHHHHHHHH
Q 010971 182 VIDMAAAPGGKTTYIAAL 199 (496)
Q Consensus 182 VLDmcAgpGgKT~~lA~l 199 (496)
.-||||||||++-++.-.
T Consensus 271 FaDvCAGPGGFSEYvLwR 288 (845)
T KOG3673|consen 271 FADVCAGPGGFSEYVLWR 288 (845)
T ss_pred HHhhhcCCCccchhhhhh
Confidence 458999999999876543
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.40 E-value=40 Score=33.10 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=53.7
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCcccc-------CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL-------GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~-------~~~~ 249 (496)
+.+||-. .|+|+.+.+++..+...| .|++++.+...+..+...+...+.. ++.++..|..+..... ..+.
T Consensus 3 ~k~~lIt-Gasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVT-GASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEE-CCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 3455544 466777887776544334 8999999998888887777666653 5777788887643210 1146
Q ss_pred cCEEEECCCCCC
Q 010971 250 VDRVLLDAPCSG 261 (496)
Q Consensus 250 fD~VLlDaPCSg 261 (496)
+|.|+..+..+.
T Consensus 82 id~vv~~ag~~~ 93 (280)
T PRK06914 82 IDLLVNNAGYAN 93 (280)
T ss_pred eeEEEECCcccc
Confidence 799988764433
|
|
| >KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=80.33 E-value=6 Score=40.19 Aligned_cols=77 Identities=21% Similarity=0.211 Sum_probs=46.7
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCC-ccccCCCC
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL-PKVLGLNT 249 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~-~~~~~~~~ 249 (496)
+-.+++|+.|| +.||.||.++.+.|+++-.| .+++.-.+.+..+.++ .+|+.. |.....|..+- .+.-...+
T Consensus 141 ~y~vkpGhtVl-vhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~ak----enG~~h~I~y~~eD~v~~V~kiTngKG 215 (336)
T KOG1197|consen 141 AYNVKPGHTVL-VHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAK----ENGAEHPIDYSTEDYVDEVKKITNGKG 215 (336)
T ss_pred hcCCCCCCEEE-EEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHH----hcCCcceeeccchhHHHHHHhccCCCC
Confidence 34689999999 66777888888888875433 6667766766666554 456654 33333343221 11112356
Q ss_pred cCEEE
Q 010971 250 VDRVL 254 (496)
Q Consensus 250 fD~VL 254 (496)
+|.|+
T Consensus 216 Vd~vy 220 (336)
T KOG1197|consen 216 VDAVY 220 (336)
T ss_pred ceeee
Confidence 77764
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.15 E-value=41 Score=33.40 Aligned_cols=79 Identities=13% Similarity=0.045 Sum_probs=46.5
Q ss_pred CCCeEeeccCC-CchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAA-PGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAg-pGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|..+|=.|++ .+|.+..++..+-..| .|+.++.+....+.+.+....+| .+.++..|..+..... ..
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~ 86 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG--AFVAGHCDVTDEASIDAVFETLEKKW 86 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC--CceEEecCCCCHHHHHHHHHHHHHhc
Confidence 35678888886 4889998888764334 66666554322333433334444 2345667876532110 12
Q ss_pred CCcCEEEECCC
Q 010971 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~fD~VLlDaP 258 (496)
+..|.++.+|-
T Consensus 87 g~iD~lv~nAG 97 (272)
T PRK08159 87 GKLDFVVHAIG 97 (272)
T ss_pred CCCcEEEECCc
Confidence 57899998763
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=80.04 E-value=8.4 Score=39.32 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=33.7
Q ss_pred cCCCCCCeEeeccCCCchHHH---HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeE
Q 010971 174 LAPQEKERVIDMAAAPGGKTT---YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~---~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv 231 (496)
..+++|++||=.++ +|+.+. ++|..++ ..|++.+.+..+.+.+++. +|++.+
T Consensus 147 ~~~~~g~~VlI~Ga-~G~vG~~aiqlAk~~G--~~Vi~~~~~~~~~~~~~~~---lGa~~v 201 (338)
T cd08295 147 CKPKKGETVFVSAA-SGAVGQLVGQLAKLKG--CYVVGSAGSDEKVDLLKNK---LGFDDA 201 (338)
T ss_pred cCCCCCCEEEEecC-ccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHh---cCCcee
Confidence 35789999996654 344444 4555443 3688888888887666432 577543
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 496 | ||||
| 1ixk_A | 315 | Crystal Structure Analysis Of Methyltransferase Hom | 3e-52 | ||
| 3a4t_A | 274 | Crystal Structure Of Atrm4 From M.Jannaschii With S | 4e-47 | ||
| 2frx_A | 479 | Crystal Structure Of Yebu, A M5c Rna Methyltransfer | 1e-41 | ||
| 2yxl_A | 450 | Crystal Structure Of Ph0851 Length = 450 | 5e-34 | ||
| 3m6w_A | 464 | Multi-Site-Specific 16s Rrna Methyltransferase Rsmf | 9e-32 | ||
| 3m6u_A | 464 | Multi-Site-Specific 16s Rrna Methyltransferase Rsmf | 9e-32 | ||
| 3m6x_A | 464 | Multi-Site-Specific 16s Rrna Methyltransferase Rsmf | 7e-31 | ||
| 3m4x_A | 456 | Structure Of A Ribosomal Methyltransferase Length = | 7e-30 | ||
| 1sqf_A | 429 | The Crystal Structure Of E. Coli Fmu Binary Complex | 1e-28 | ||
| 2b9e_A | 309 | Human Nsun5 Protein Length = 309 | 2e-26 | ||
| 4fzv_A | 359 | Crystal Structure Of The Human Mterf4:nsun4:sam Ter | 4e-16 | ||
| 4fp9_A | 360 | Human Mterf4-Nsun4 Protein Complex Length = 360 | 5e-16 |
| >pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog Protein From Pyrococcus Horikoshii Length = 315 | Back alignment and structure |
|
| >pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With Sinefungin Length = 274 | Back alignment and structure |
|
| >pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase From E.Coli Length = 479 | Back alignment and structure |
|
| >pdb|2YXL|A Chain A, Crystal Structure Of Ph0851 Length = 450 | Back alignment and structure |
|
| >pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group P21212 In Complex With S-Adenosyl-L- Methionine Length = 464 | Back alignment and structure |
|
| >pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group 43 Length = 464 | Back alignment and structure |
|
| >pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group P21212 Length = 464 | Back alignment and structure |
|
| >pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase Length = 456 | Back alignment and structure |
|
| >pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With S- Adenosylmethionine At 2.1 A Resolution Length = 429 | Back alignment and structure |
|
| >pdb|2B9E|A Chain A, Human Nsun5 Protein Length = 309 | Back alignment and structure |
|
| >pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary Complex Length = 359 | Back alignment and structure |
|
| >pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex Length = 360 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 496 | |||
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 1e-175 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 1e-156 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 1e-153 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 1e-150 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 1e-147 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 1e-136 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 3e-85 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 3e-77 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-06 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 7e-07 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 1e-04 |
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Length = 315 | Back alignment and structure |
|---|
Score = 493 bits (1271), Expect = e-175
Identities = 117/323 (36%), Positives = 179/323 (55%), Gaps = 10/323 (3%)
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ LD GY++ +++ + + E+ EKP P C R NTLK +DL
Sbjct: 3 LSPSMLDKLLRLGYSKLFADRYFQLWGE-RAIRIAEAMEKPLPRCFRVNTLKISVQDLVK 61
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
L +G W+K G + I +TPE++ G +Q ASS P +AL P+ E
Sbjct: 62 RLNKKGFQFKR-VPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGE 120
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
V DMAAAPGGKT+Y+A LM+N G+IYA ++ +RL+ NL R+GV N I+ +
Sbjct: 121 IVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLH 180
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
+ ++ D++LLDAPC+G+G I K+ K +++++DI+ C LQ +L+ ++++
Sbjct: 181 IGELNV--EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVL-- 236
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
K GG +VYSTCS+ ENE VI +AL DV+L+P L +G ++
Sbjct: 237 --KPGGILVYSTCSLEPEENEFVIQWALDNFDVELLP--LKYGEPALTNPFGIELSEEIK 292
Query: 361 KTRRFYPHVHNMDGFFVAKLKKM 383
RR YP VH GFF+AK++K+
Sbjct: 293 NARRLYPDVHETSGFFIAKIRKL 315
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} Length = 479 | Back alignment and structure |
|---|
Score = 452 bits (1164), Expect = e-156
Identities = 108/329 (32%), Positives = 166/329 (50%), Gaps = 21/329 (6%)
Query: 70 SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL 129
+ Y + FL M + + + + ++P +R NTLK D + G L
Sbjct: 5 TVYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTL 64
Query: 130 DPLSKWSKVGLVVY---DSQVPIGATPEYMAGFYMLQSASSFLPVMALA--PQEKERVID 184
P W + G + + +P+G+T E+++G + +Q ASS LPV AL +RV+D
Sbjct: 65 TP-IPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMD 123
Query: 185 MAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244
+AAAPG KTT I+A M N G I ANE ASR+K L AN+ R G++N + ++DG
Sbjct: 124 VAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAA 183
Query: 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304
+ D +LLDAPCSG GV+ KD + S E Q+ + Q++LI +A + +
Sbjct: 184 VP-EMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RP 238
Query: 305 GGYIVYSTCSIMVTENEAVIDYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKT 362
GG +VYSTC++ ENEAV + + V+ +P G F + E
Sbjct: 239 GGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP--------GANKALTEEGF 290
Query: 363 RRFYPHVHNMDGFFVAKLKKMSNSKKTSA 391
+P +++ +GFFVA+L+K A
Sbjct: 291 LHVFPQIYDCEGFFVARLRKTQAIPALPA 319
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* Length = 464 | Back alignment and structure |
|---|
Score = 442 bits (1140), Expect = e-153
Identities = 101/333 (30%), Positives = 151/333 (45%), Gaps = 17/333 (5%)
Query: 76 EFLIGALVEMFPPVELMELIESF-EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
+ + + E+ E +++ E R LR NTLK + L P
Sbjct: 4 KAFLSRMAELLGE-EFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRI---SPWPLRP-IP 58
Query: 135 WSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTT 194
W + G + P G P + AG Y +Q S+ + L P+ ERV+D+AAAPGGKTT
Sbjct: 59 WCQEGFYYPEEARP-GPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTT 117
Query: 195 YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254
++AA M GL+ ANE+ R++ L N+ R G V L + G RVL
Sbjct: 118 HLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPL-AVTQAPPRALAEAFG-TYFHRVL 175
Query: 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314
LDAPCSG G+ KD ++ + +QK L+ A ++ GG +VYSTC+
Sbjct: 176 LDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLL----GPGGVLVYSTCT 231
Query: 315 IMVTENEAVIDYALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
ENE V+ + LK + +L L G + E +P L KT R +PH
Sbjct: 232 FAPEENEGVVAHFLKAHPEFRLEDARLHPLFAPGVPEWGE--GNPELLKTARLWPHRLEG 289
Query: 373 DGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPE 405
+G F+A+ +K + T +PS ++
Sbjct: 290 EGHFLARFRKEGGAWSTPRLERPSPLSQEALRA 322
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} Length = 456 | Back alignment and structure |
|---|
Score = 435 bits (1120), Expect = e-150
Identities = 91/318 (28%), Positives = 143/318 (44%), Gaps = 16/318 (5%)
Query: 74 YNEFLIGALVEMFPPVELMELIESF-EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPL 132
+ I + E + + + R N LK D+ + + P
Sbjct: 8 LPQQFIKKYRLLLGE-EASDFFSALEQGSVKKGFRWNPLKPAGLDMVQTYHSEELQPAP- 65
Query: 133 SKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGK 192
+S G + G + + AG+ Q S+ + A A + E+V+D+ AAPGGK
Sbjct: 66 --YSNEGFLG----TVNGKSFLHQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGK 119
Query: 193 TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252
+T +AA MK GL+ NE+ R K L+ N+ R GV+N IV N+ EL DR
Sbjct: 120 STQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFS-GFFDR 178
Query: 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312
+++DAPCSG G+ KD + + E C Q++++ +AI M+ K+ G ++YST
Sbjct: 179 IVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKML----KNKGQLIYST 234
Query: 313 CSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
C+ ENE +I + ++ V + L E LEKT R +PH
Sbjct: 235 CTFAPEENEEIISWLVENYPVTIEEIPLTQSVSSG--RSEWGSVAGLEKTIRIWPHKDQG 292
Query: 373 DGFFVAKLKKMSNSKKTS 390
+G FVAKL ++
Sbjct: 293 EGHFVAKLTFHGQNQMHK 310
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A Length = 274 | Back alignment and structure |
|---|
Score = 420 bits (1081), Expect = e-147
Identities = 117/294 (39%), Positives = 169/294 (57%), Gaps = 24/294 (8%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
++ ++ + +R NTLK L L N+GV L+ + V S IG+TP
Sbjct: 1 MMIVYKGEKMQFIRVNTLKINPEVLKKRLENKGVVLEK--TFLDYAFEVKKSPFSIGSTP 58
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
EY+ G+YM QS SS +P + L P+E + ++DM AAPGGKTT++A LMKN G I A E+
Sbjct: 59 EYLFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISK 118
Query: 214 SRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV--DRVLLDAPCSGTGVISKDESV 271
+R K+L +N++RMGV NTI+ N D + L N + D++LLDAPCSG + K+
Sbjct: 119 TRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNR-- 176
Query: 272 KTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331
+ S EDI+ CS QK+LI ID++ K G +VYSTCS+ V ENE VI Y L+KR
Sbjct: 177 --NVSEEDIKYCSLRQKELIDIGIDLL----KKDGELVYSTCSMEVEENEEVIKYILQKR 230
Query: 332 -DVKLVPCGLDFGRQGFVRFREHRFHPS-LEKTRRFYPHVHNMDGFFVAKLKKM 383
DV+L+ + F+ ++ T R +P + FF+AKL+K+
Sbjct: 231 NDVELIIIKAN-------EFKGINIKEGYIKGTLRVFPP---NEPFFIAKLRKI 274
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Length = 309 | Back alignment and structure |
|---|
Score = 395 bits (1017), Expect = e-136
Identities = 88/314 (28%), Positives = 137/314 (43%), Gaps = 32/314 (10%)
Query: 99 EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKV----------------GLVV 142
P +R NTLKT D+ D +G + + L+V
Sbjct: 7 ASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLV 66
Query: 143 YDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKN 202
+ +Q + P Y AG +LQ +S LP M L P VID AAPG KT+++AAL+KN
Sbjct: 67 FPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKN 126
Query: 203 TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL-NTVDRVLLDAPCSG 261
G I+A ++ A RL S+ L R GV+ + D + + V +LLD CSG
Sbjct: 127 QGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSG 186
Query: 262 TGVISKDESVKTSKSLED--IQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE 319
+G+ S+ + + + + Q++ + A+ S +VYSTCS+ E
Sbjct: 187 SGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTF-----PSLQRLVYSTCSLCQEE 241
Query: 320 NEAVIDYALKKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFV 377
NE V+ AL++ +L P + +G F P E R P GFFV
Sbjct: 242 NEDVVRDALQQNPGAFRLAPALPAWPHRGLSTF------PGAEHCLRASPETTLSSGFFV 295
Query: 378 AKLKKMSNSKKTSA 391
A ++++ ++
Sbjct: 296 AVIERVEVPRRARG 309
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} Length = 450 | Back alignment and structure |
|---|
Score = 269 bits (689), Expect = 3e-85
Identities = 97/312 (31%), Positives = 151/312 (48%), Gaps = 19/312 (6%)
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
Y +LI + + ++ I +R NTLK ++ L GV +
Sbjct: 155 YLAPSWLIERVKGILGDETEDFFRSVNKRHEWISIRVNTLKANVEEVIGELEEDGVEVVR 214
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
S+ L + + + G ++Q +S + + L P+ E V+D+AAAPGG
Sbjct: 215 -SERVPTILKI-KGPYNFDTSSAFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGG 272
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
KTT++A LMKN G IYA ++ R+K L + RMG+ D + P+++G D
Sbjct: 273 KTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVAD 332
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
+VLLDAPC+ +G I K+ ++ + I + S LQ++L+ +A +V K GG ++Y+
Sbjct: 333 KVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLV----KPGGRLLYT 388
Query: 312 TCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
TCSI ENE I + L + KLVP + LE T R +PH H
Sbjct: 389 TCSIFKEENEKNIRWFLNVHPEFKLVPLKSPYDPG------------FLEGTMRAWPHRH 436
Query: 371 NMDGFFVAKLKK 382
+ GFF A L+K
Sbjct: 437 STIGFFYALLEK 448
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A Length = 429 | Back alignment and structure |
|---|
Score = 247 bits (633), Expect = 3e-77
Identities = 90/314 (28%), Positives = 147/314 (46%), Gaps = 31/314 (9%)
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
Y + +L+ L + +P + ++E+ + P+ LR N R +L G+ P
Sbjct: 143 YLHPSWLLKRLQKAYPE-QWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFP 201
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
+ + ++ P+ A P + G+ +Q AS+ + LAPQ E ++D+ AAPGG
Sbjct: 202 -HADYPDAVRL-ETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGG 259
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
KTT+I + + A ++ RL + NL R+G+ T+ DG + G D
Sbjct: 260 KTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQG-DGRYPSQWCGEQQFD 317
Query: 252 RVLLDAPCSGTGVISK--DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309
R+LLDAPCS TGVI + D +K + DI + + LQ +++ A + K+GG +V
Sbjct: 318 RILLDAPCSATGVIRRHPD--IKWLRRDRDIPELAQLQSEILDAIWPHL----KTGGTLV 371
Query: 310 YSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPH 368
Y+TCS++ EN I L++ D +L G + ++ P
Sbjct: 372 YATCSVLPEENSLQIKAFLQRTADAELCETGTP-----------------EQPGKQNLPG 414
Query: 369 VHNMDGFFVAKLKK 382
DGFF AKL K
Sbjct: 415 AEEGDGFFYAKLIK 428
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 2e-09
Identities = 63/497 (12%), Positives = 140/497 (28%), Gaps = 159/497 (31%)
Query: 3 LNIREESDEFR-LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSR-KEY 60
+ ++ D + + +KEEI+ + R+ F L K +++
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT-LRL---------FWTLLSKQEEMVQKF 82
Query: 61 VQQ-LKLDLGSYYGYNEFLIGAL-VEMFPPVELMELIESFEKPRPICLRTNTLKTR---- 114
V++ L+++ Y FL+ + E P + + + + R N + +
Sbjct: 83 VEEVLRIN----YK---FLMSPIKTEQRQPSMMTRM---YIEQRDRLYNDNQVFAKYNVS 132
Query: 115 RRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMAL 174
R L + L P +++ G + G
Sbjct: 133 RLQPYLKLRQALLELRPAK-----NVLID------G-----VLGS--------------- 161
Query: 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVC 234
GKT + + + + + + + N C
Sbjct: 162 ----------------GKTWVALDVCLSYKVQCKMDF----------KIFWLNLKN---C 192
Query: 235 NYDGNELPKVLGLNT-VDRVLLDAPCSGTGVISKDESVKTSKS----LEDIQKCSYLQKQ 289
N L + L +D + + + S++ + + C L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--L--- 247
Query: 290 LIL------AAIDMVDANSKSGGYIVYSTCSIMV-TENEAVIDY--ALKKRDVKLVPCGL 340
L+L A + + + C I++ T + V D+ A + L +
Sbjct: 248 LVLLNVQNAKAWNAFNLS-----------CKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 341 DF----GRQGFVRFREHRFH--PSLEKTRRFYPHVHNMDGFFVAKLK---------KMSN 385
+ +++ + R P T P ++ ++ K N
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTT--NPRRLSI---IAESIRDGLATWDNWKHVN 351
Query: 386 SKKTSAGPQPS----ETVEQQT--------PES-NVSNG------DKKTEENSEQVL--M 424
K + + S E E + P S ++ + + V+ +
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 425 KKATTKAKDLKKKTSGL 441
K + K K+ T +
Sbjct: 412 HKYSLVEKQPKESTISI 428
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 3e-06
Identities = 73/510 (14%), Positives = 148/510 (29%), Gaps = 157/510 (30%)
Query: 18 EEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLK-----LDLGSY- 71
I+ E++QP + I++ R+ ++ + ++ SR + +L+ L
Sbjct: 96 SPIKTEQRQPS--MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 72 --YGYNEFLIGA----LV----------EMFP-------------PVELMELIESF---- 98
G ++G+ + P ++E+++
Sbjct: 154 LIDG----VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 99 --------EKPRPICLRTNTLKTRRRDL-------ADVLINRGVN----LDPLSKWSKVG 139
+ I LR ++++ R L +L+ V + + K+
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI- 268
Query: 140 LV------VYDSQVPIGATPEYM----AGFYMLQSASSFLPVMALAPQE--KE------R 181
L+ V D T + + S L + PQ+ +E R
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 182 VIDMAAAPGGKTTYIAALMKN-----TGLIYANEMKASR-----LKSLTANLHRMGVTNT 231
+ + IA +++ + N K + L L +R
Sbjct: 329 RLSI----------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 232 IVCNYDGNELP-KVLGL-------NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQ-- 281
V + +P +L L + V V+ ++ K +++ S+ I
Sbjct: 379 SVFPPSAH-IPTILLSLIWFDVIKSDVMVVV--NKLHKYSLVEKQ-PKESTISIPSIYLE 434
Query: 282 ---KCS---YLQKQLI--LAAIDMVDANSKSG----GYIVYSTCSIMVTENEAVIDYALK 329
K L + ++ D++ Y YS I + LK
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSH-----------IGHHLK 482
Query: 330 KRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKK- 388
+ + R F+ F RF LE+ R N G + L+++ K
Sbjct: 483 NIEHPER---MTLFRMVFLDF---RF---LEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 389 -TSAGPQPSETVEQ-----QTPESNVSNGD 412
P+ V E N+
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSK 563
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 7e-07
Identities = 22/164 (13%), Positives = 46/164 (28%), Gaps = 35/164 (21%)
Query: 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI 232
ALAP+ E + D+ G E+ R + + +N +GV++ I
Sbjct: 20 ALAPKPHETLWDIGGGSGSIAIE-WLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI 78
Query: 233 VCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLIL 292
+ + D + + + GV
Sbjct: 79 AVQQGAPRAFDDV-PDNPDVIFIGGGLTAPGV---------------------------- 109
Query: 293 AAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLV 336
GG +V + ++ E+E ++ K+ +
Sbjct: 110 --FAAAWKRLPVGGRLVANAVTV---ESEQMLWALRKQFGGTIS 148
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI 232
+E V+D+ G Y++ ++ G +YA +++ + ++++G+ N
Sbjct: 32 EFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVE 91
Query: 233 VCNYDGNELPKVLGLNTVDRVLL 255
V + N++P L NTVD + +
Sbjct: 92 VLKSEENKIP--LPDNTVDFIFM 112
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 496 | |||
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 100.0 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 100.0 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 100.0 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 100.0 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 100.0 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 100.0 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 100.0 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 100.0 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 100.0 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.75 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.73 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.69 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.68 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.67 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.66 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.64 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.63 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.63 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.6 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.59 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.59 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.56 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.56 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.56 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.54 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.54 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.54 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.52 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.5 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.49 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.49 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.49 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.49 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.48 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.48 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.48 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.47 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.46 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.46 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.46 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.44 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.44 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.42 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.4 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.4 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.39 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.38 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.37 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.37 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.37 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.37 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.37 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.36 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.36 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.36 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.35 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.35 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.34 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.34 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.33 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.33 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.33 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.33 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.32 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.32 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.3 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.3 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.29 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.29 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.29 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.28 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.28 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.28 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.28 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.27 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.27 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.27 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.26 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.26 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.26 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.25 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.25 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.24 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.24 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.23 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.23 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.23 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.23 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.22 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.22 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.22 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.22 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.21 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.21 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.21 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.21 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.2 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.2 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.2 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.18 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.18 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.17 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.17 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.17 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.17 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.17 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.17 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.16 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.15 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.15 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.15 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.14 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.14 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.14 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.14 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.13 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.13 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.13 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.13 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.12 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.12 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.12 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.12 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.12 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.11 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.11 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.1 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.1 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.09 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.08 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.08 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.08 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.08 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.08 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.08 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.07 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.07 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.06 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.06 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.05 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.05 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.03 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.03 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.03 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.03 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.02 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.02 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.02 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.01 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.01 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.01 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.01 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.01 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.01 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.01 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.99 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.99 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 98.99 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 98.99 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 98.98 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 98.98 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 98.98 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 98.97 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 98.97 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.96 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 98.96 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.95 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 98.95 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.95 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 98.94 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.93 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 98.93 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 98.92 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 98.92 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 98.91 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 98.91 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 98.9 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.9 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.9 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.9 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 98.9 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 98.9 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.9 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.9 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.89 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 98.88 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 98.87 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 98.86 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.86 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 98.86 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.86 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 98.85 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.84 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 98.83 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.83 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.83 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 98.82 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.82 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.8 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.8 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 98.8 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.8 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.79 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.79 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.79 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.78 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 98.78 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.78 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.78 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.77 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.77 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 98.76 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.75 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 98.75 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.75 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 98.75 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.74 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.74 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.74 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.73 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.72 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.72 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.71 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.71 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.71 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.71 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.7 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.7 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.69 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.69 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.69 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.68 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.68 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.67 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.67 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.66 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.66 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.65 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.65 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.64 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.64 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.64 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 98.63 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.62 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.62 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.62 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.59 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.59 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.58 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.57 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.56 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.56 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.5 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.49 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.48 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.47 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.44 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.41 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.4 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.4 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.36 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.36 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.33 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.32 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.32 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.32 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 98.32 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.29 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.29 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.24 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.24 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.24 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.23 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.23 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.2 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.12 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 98.11 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.09 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.08 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.04 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.02 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.01 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.01 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.0 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.0 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 97.89 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.89 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 97.87 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.8 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.76 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 97.68 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.63 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.54 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.38 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.32 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.23 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.16 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.14 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.85 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 96.79 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 96.77 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.67 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.64 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.56 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.55 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 96.4 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 96.14 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 96.11 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 95.97 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 95.84 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.7 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 95.62 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.59 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.56 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.51 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.3 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 95.27 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.24 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.16 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 94.96 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 94.94 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.89 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.89 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 94.88 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 94.84 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 94.73 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.71 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 94.64 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 94.63 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 94.62 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 94.61 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 94.51 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 94.48 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 94.47 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 94.41 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 94.41 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 94.36 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 94.02 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 93.84 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 93.8 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 93.76 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 93.68 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 93.63 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 93.58 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 93.33 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 93.32 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 93.06 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 93.02 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 92.98 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 92.97 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 92.88 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 92.74 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 92.72 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 92.65 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 92.21 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 92.2 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 91.99 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 91.92 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 91.79 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 91.78 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 91.73 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 91.7 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 91.53 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 91.5 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 91.44 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 91.44 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 91.39 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 91.31 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 91.3 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 91.17 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.98 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 90.95 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 90.93 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 90.64 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 90.48 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 90.47 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 90.43 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 90.41 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 90.41 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 90.39 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 90.18 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 90.14 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 89.91 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 89.9 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 89.9 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 89.8 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 89.6 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 89.57 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 89.29 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 89.25 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 89.23 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 89.22 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 88.93 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 88.92 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 88.92 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 88.9 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 88.83 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 88.81 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 88.71 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 88.62 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 88.56 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 88.5 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 88.45 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 88.44 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 88.31 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 88.3 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 88.28 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 88.22 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 88.18 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 87.98 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 87.88 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 87.83 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 87.53 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 87.5 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 87.43 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 87.43 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 87.39 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 87.38 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 87.36 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 87.26 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 87.19 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 87.11 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 87.04 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 86.99 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 86.79 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 86.64 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 86.62 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 86.55 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 86.49 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 86.44 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 86.4 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 86.33 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 86.27 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 86.24 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 86.23 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 86.22 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 86.04 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 85.96 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 85.91 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 85.91 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 85.89 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 85.75 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 85.67 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 85.64 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 85.63 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 85.51 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 85.45 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 85.28 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 85.18 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 85.13 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 85.02 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 84.91 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 84.89 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 84.81 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 84.79 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 84.79 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 84.78 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 84.67 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 84.62 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 84.54 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 84.42 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 84.31 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 84.29 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 84.25 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 84.22 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 84.16 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 84.14 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 84.11 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 84.06 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 83.93 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 83.89 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 83.84 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 83.82 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 83.76 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 83.57 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 83.5 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 83.49 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 83.43 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 83.28 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 83.21 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 83.18 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 83.03 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 82.96 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 82.75 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 82.72 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 82.62 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 82.5 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 82.48 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 82.46 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 82.28 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 82.22 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 82.04 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 81.89 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 81.82 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 81.7 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 81.6 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 81.57 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 81.52 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 81.47 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 81.4 |
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-62 Score=497.68 Aligned_cols=309 Identities=38% Similarity=0.680 Sum_probs=275.8
Q ss_pred hHhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEec
Q 010971 65 KLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYD 144 (496)
Q Consensus 65 ~~~l~~~y~~p~wl~~~l~~~~~~~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~ 144 (496)
.++|+..|+||.||+++|.+.|| +++.+|+++++.++|+++|||++|++++++.+.|.+.|+.++++ +|++.++.+..
T Consensus 7 ~~~l~~~~~~P~w~~~~~~~~~g-~~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~-~~~~~~~~~~~ 84 (315)
T 1ixk_A 7 MLDKLLRLGYSKLFADRYFQLWG-ERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRV-PWAKEGFCLTR 84 (315)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHT-THHHHHHHHTTSCCCCEEEECTTTSCHHHHHHHHHHTTCEEEEE-TTEEEEEEEEE
T ss_pred HHHHHHHhCCcHHHHHHHHHHcc-HHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHHHHHhCCCeeeEC-CCCCceEEEeC
Confidence 35689999999999999999999 88999999999999999999999999999999999999999888 89999988765
Q ss_pred CCCCCCCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q 010971 145 SQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224 (496)
Q Consensus 145 ~~~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~ 224 (496)
.+.++..+++|..|+|++||.+|++++.+|++++|++|||+|||||++|++|++++++.+.|+|+|+++.+++.+++|++
T Consensus 85 ~~~~~~~~~~~~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~ 164 (315)
T 1ixk_A 85 EPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLS 164 (315)
T ss_dssp CSSCGGGSHHHHTTSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCcccChhHhcceEEEeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 54568899999999999999999999999999999999999999999999999999878999999999999999999999
Q ss_pred HcCCCeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 010971 225 RMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304 (496)
Q Consensus 225 r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkp 304 (496)
++|+.++.+++.|+..++.. .+.||+||+||||||+|+++++|+++|.|+.+++..+..+|.++|.++.++| +|
T Consensus 165 ~~g~~~v~~~~~D~~~~~~~--~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~L----kp 238 (315)
T 1ixk_A 165 RLGVLNVILFHSSSLHIGEL--NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVL----KP 238 (315)
T ss_dssp HHTCCSEEEESSCGGGGGGG--CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHE----EE
T ss_pred HhCCCeEEEEECChhhcccc--cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhC----CC
Confidence 99999999999999887642 3689999999999999999999999999999999999999999999999997 99
Q ss_pred CcEEEEEeCCCCCcCCHHHHHHHHHhCCcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEec
Q 010971 305 GGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383 (496)
Q Consensus 305 GG~LVYSTCSi~~eENE~vV~~~L~~~~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~ 383 (496)
||+|||||||++++|||++|.++|++++++++++. .+.+|+..|....+.+....|+|++||.+++||||+|+|+|.
T Consensus 239 GG~lv~stcs~~~~Ene~~v~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~A~l~k~ 315 (315)
T 1ixk_A 239 GGILVYSTCSLEPEENEFVIQWALDNFDVELLPLK--YGEPALTNPFGIELSEEIKNARRLYPDVHETSGFFIAKIRKL 315 (315)
T ss_dssp EEEEEEEESCCCGGGTHHHHHHHHHHSSEEEECCC--SSEECCSSGGGCCCCGGGGGSEEECTTTSSSCSEEEEEEEEC
T ss_pred CCEEEEEeCCCChHHhHHHHHHHHhcCCCEEecCC--ccccCcccccccccccccCCEEEECCCCCCcccEEEEEEEEC
Confidence 99999999999999999999999999999988874 333565555544455556789999999999999999999984
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-60 Score=504.62 Aligned_cols=297 Identities=31% Similarity=0.447 Sum_probs=262.0
Q ss_pred HhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCC-eEEEEcCCCCCHHHHHHHHHHcCCccC---CCCcCCcccEEEecCC
Q 010971 71 YYGYNEFLIGALVEMFPPVELMELIESFEKPRP-ICLRTNTLKTRRRDLADVLINRGVNLD---PLSKWSKVGLVVYDSQ 146 (496)
Q Consensus 71 ~y~~p~wl~~~l~~~~~~~e~~~~lea~~~~~P-~~iRvNtlk~~~~~l~~~L~~~Gv~~~---p~~~~~~~gl~v~~~~ 146 (496)
.+++|.||+++|.+.||. ++.+|+++++.++| ++|||||+|+ +++.+.+ |+.++ |+ +|++.|++ . .
T Consensus 5 ~~~~P~w~~~~~~~~~g~-e~~~~~~a~~~~~~~~~lRvN~lk~--~~~~~~~---~~~~~~~~~~-~~~~~~~~--~-~ 74 (456)
T 3m4x_A 5 ATTLPQQFIKKYRLLLGE-EASDFFSALEQGSVKKGFRWNPLKP--AGLDMVQ---TYHSEELQPA-PYSNEGFL--G-T 74 (456)
T ss_dssp --CCCHHHHHHHHHHHGG-GHHHHHHHHHHCCCCCEEECCTTST--THHHHHH---HHTCSSCCBC-TTCTTEEE--S-C
T ss_pred hhhChHHHHHHHHHHhCH-HHHHHHHHcCCCCCCcEEEEcCccH--HHHHHhc---CCcccccCCC-CCCcceEE--c-C
Confidence 478999999999999995 69999999999999 9999999999 5665543 66666 77 89999987 2 2
Q ss_pred CCCCCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 010971 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM 226 (496)
Q Consensus 147 ~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~ 226 (496)
.++.+++|..|+|++||++|++++.+|++++|++|||||||||+||++||+++++.|.|+|+|+++.|++.+++|++++
T Consensus 75 -~~~~~~~~~~G~~~vQd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~ 153 (456)
T 3m4x_A 75 -VNGKSFLHQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERW 153 (456)
T ss_dssp -CCTTSHHHHTTSCEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHH
T ss_pred -CCCCChHHhCCcEEEECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 3589999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred CCCeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Q 010971 227 GVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (496)
Q Consensus 227 g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG 306 (496)
|+.|+.+++.|+..++... .+.||+||+||||||+|+++++|+++|.|+.+++..++.+|++||.+|+++| +|||
T Consensus 154 g~~nv~v~~~Da~~l~~~~-~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~L----kpGG 228 (456)
T 3m4x_A 154 GVSNAIVTNHAPAELVPHF-SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKML----KNKG 228 (456)
T ss_dssp TCSSEEEECCCHHHHHHHH-TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTE----EEEE
T ss_pred CCCceEEEeCCHHHhhhhc-cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhc----CCCc
Confidence 9999999999998876433 3689999999999999999999999999999999999999999999999997 9999
Q ss_pred EEEEEeCCCCCcCCHHHHHHHHHhCCcEEeecCCcCC-CCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEecCC
Q 010971 307 YIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFG-RQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385 (496)
Q Consensus 307 ~LVYSTCSi~~eENE~vV~~~L~~~~~~lv~~~~~~~-~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~~~ 385 (496)
+|||||||++++|||+||.++|++++++++++....+ .+|...|... +....++|++||.+++||||+|+|+|.+.
T Consensus 229 ~LvYsTCs~~~eEne~vv~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~r~~P~~~~~dGFF~A~l~k~~~ 305 (456)
T 3m4x_A 229 QLIYSTCTFAPEENEEIISWLVENYPVTIEEIPLTQSVSSGRSEWGSV---AGLEKTIRIWPHKDQGEGHFVAKLTFHGQ 305 (456)
T ss_dssp EEEEEESCCCGGGTHHHHHHHHHHSSEEEECCCCSSCCEECCGGGSSS---TTGGGSEEECTTTSSSSCEEEEEEEECSC
T ss_pred EEEEEEeecccccCHHHHHHHHHhCCCEEEeccccccccccccccccc---cccCCeEEECCCCCCCcCeEEEEEEECCC
Confidence 9999999999999999999999999999988753221 1232223221 24466899999999999999999999865
Q ss_pred C
Q 010971 386 S 386 (496)
Q Consensus 386 ~ 386 (496)
.
T Consensus 306 ~ 306 (456)
T 3m4x_A 306 N 306 (456)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-59 Score=499.24 Aligned_cols=299 Identities=32% Similarity=0.508 Sum_probs=267.5
Q ss_pred ChHHHHHHHHHhCCHHHHHHHHHHcCCC-CCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEecCCCCCCCC
Q 010971 74 YNEFLIGALVEMFPPVELMELIESFEKP-RPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGAT 152 (496)
Q Consensus 74 ~p~wl~~~l~~~~~~~e~~~~lea~~~~-~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~~~~~i~~~ 152 (496)
+|.||+++|.+.|| +++.+|+++++.+ +|++|||||+|++++++.+.| |+.++++ +|++.|+++.. ...++.+
T Consensus 2 lP~w~~~~~~~~~g-~e~~~~l~a~~~~~~~~~lRvN~lk~~~~~~~~~l---~~~~~~~-~~~~~g~~l~~-~~~~~~~ 75 (464)
T 3m6w_A 2 LPKAFLSRMAELLG-EEFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRIS---PWPLRPI-PWCQEGFYYPE-EARPGPH 75 (464)
T ss_dssp CCHHHHHHHHHHHG-GGHHHHHHHHHTSCCCCEEEECTTTCCHHHHHHHC---SSCCEEE-TTEEEEEECCT-TCCCSSS
T ss_pred CcHHHHHHHHHHHH-HHHHHHHHHcCCCCCCeEEEEcCCCCCHHHHHHHc---CCCceec-CCCCceEEECC-CCCcccC
Confidence 79999999999999 5699999999999 999999999999999998877 7888888 89999988643 3457899
Q ss_pred cccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEE
Q 010971 153 PEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI 232 (496)
Q Consensus 153 ~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~ 232 (496)
++|..|.|++||++|++++.+|++++|++|||||||||++|++||+++++.|.|+|+|+++.|++.+++|++++|+. +.
T Consensus 76 ~~~~~G~~~vQd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~ 154 (464)
T 3m6w_A 76 PFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LA 154 (464)
T ss_dssp HHHHTTSEEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CE
T ss_pred hHHhCCeEEEECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EE
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999 99
Q ss_pred EEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 233 VCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 233 v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+++.|+..++... .+.||+||+||||||+|+++++|+++|.|+++++..++.+|++||.+|+++| +|||+|||||
T Consensus 155 ~~~~Da~~l~~~~-~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~L----kpGG~LvysT 229 (464)
T 3m6w_A 155 VTQAPPRALAEAF-GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLL----GPGGVLVYST 229 (464)
T ss_dssp EECSCHHHHHHHH-CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTE----EEEEEEEEEE
T ss_pred EEECCHHHhhhhc-cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhc----CCCcEEEEEe
Confidence 9999998876433 3689999999999999999999999999999999999999999999999997 9999999999
Q ss_pred CCCCCcCCHHHHHHHHHhC-CcEEeecCCcCC-CCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEecCCC
Q 010971 313 CSIMVTENEAVIDYALKKR-DVKLVPCGLDFG-RQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386 (496)
Q Consensus 313 CSi~~eENE~vV~~~L~~~-~~~lv~~~~~~~-~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~~~~ 386 (496)
||++++|||++|.+||+++ +++++++....+ .+|...|... .+.+..++|++||.+++||||+|+|+|.+..
T Consensus 230 Cs~~~eEne~vv~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~r~~P~~~~~dGfF~A~l~k~~~~ 303 (464)
T 3m6w_A 230 CTFAPEENEGVVAHFLKAHPEFRLEDARLHPLFAPGVPEWGEG--NPELLKTARLWPHRLEGEGHFLARFRKEGGA 303 (464)
T ss_dssp SCCCGGGTHHHHHHHHHHCTTEEEECCCCSTTSEECCGGGTTT--CGGGGGSEEECTTTSSSSCEEEEEEEECSCC
T ss_pred ccCchhcCHHHHHHHHHHCCCcEEEecccccccccCccccccc--ccccCCeEEECCCCCCceeEEEEEEEECCCC
Confidence 9999999999999999998 799998754321 2233223221 1345678999999999999999999998543
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-58 Score=495.63 Aligned_cols=301 Identities=35% Similarity=0.563 Sum_probs=263.0
Q ss_pred HhcChHHHHHHHHHhCCHH-HHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEecC---C
Q 010971 71 YYGYNEFLIGALVEMFPPV-ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDS---Q 146 (496)
Q Consensus 71 ~y~~p~wl~~~l~~~~~~~-e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~~---~ 146 (496)
.|++|.||+++|.+.||.+ ++.+|+++++.++|++|||||+|++++++.+.|...|+.++++ +|++.|+.+... .
T Consensus 5 ~~~~P~~~~~~~~~~~g~~~~~~~~~~a~~~~~p~~lRvN~lk~~~~~~~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~ 83 (479)
T 2frx_A 5 TVYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDA 83 (479)
T ss_dssp --CCCHHHHHHHGGGCC----CHHHHHHHTSCCCCCEEECTTTCCHHHHHHHHGGGCCCCCEE-TTEEEEEC--------
T ss_pred cccCcHHHHHHHHHHcCccHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHcCCceeec-CCCCceEEEecCcccc
Confidence 5899999999999999987 6899999999999999999999999999999999999999998 899999876422 1
Q ss_pred CCCCCCcccccccEEEeCCcchhHHHhcCCC--CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q 010971 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQ--EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224 (496)
Q Consensus 147 ~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~--~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~ 224 (496)
.+++.+++|..|.|++||++||+++.+|+++ +|++|||||||||++|++||+++++.|.|+|+|+++.|++.+++|++
T Consensus 84 ~~~~~~~~~~~G~~~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~ 163 (479)
T 2frx_A 84 LPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANIS 163 (479)
T ss_dssp -CGGGSHHHHTTSEEECCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHH
T ss_pred cCcccChHHhCcEEEEECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH
Confidence 2678899999999999999999999999998 99999999999999999999999888999999999999999999999
Q ss_pred HcCCCeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 010971 225 RMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304 (496)
Q Consensus 225 r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkp 304 (496)
++|+.|+.+++.|+..++... .+.||+||+||||||+|+++++|+++|.|+++++..++.+|++||.+|+++| ||
T Consensus 164 r~g~~nv~~~~~D~~~~~~~~-~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~L----kp 238 (479)
T 2frx_A 164 RCGISNVALTHFDGRVFGAAV-PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RP 238 (479)
T ss_dssp HHTCCSEEEECCCSTTHHHHS-TTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHE----EE
T ss_pred HcCCCcEEEEeCCHHHhhhhc-cccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhc----CC
Confidence 999999999999999876422 3689999999999999999999999999999999999999999999999997 99
Q ss_pred CcEEEEEeCCCCCcCCHHHHHHHHHhCC-c-EEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEe
Q 010971 305 GGYIVYSTCSIMVTENEAVIDYALKKRD-V-KLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382 (496)
Q Consensus 305 GG~LVYSTCSi~~eENE~vV~~~L~~~~-~-~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K 382 (496)
||+|||||||++++|||+||.++|++++ + +++++... .+|.... .....++|++||.+++||||+|+|+|
T Consensus 239 GG~LvysTcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~--~~~~~~~------~~~~g~~r~~P~~~~~dGfF~A~l~k 310 (479)
T 2frx_A 239 GGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDL--FPGANKA------LTEEGFLHVFPQIYDCEGFFVARLRK 310 (479)
T ss_dssp EEEEEEEESCCSSTTTHHHHHHHHHHSTTTEEECCCTTS--STTGGGG------BCTTSCEEECTTTTTSCCEEEEEEEE
T ss_pred CCEEEEecccCCcccCHHHHHHHHHHCCCceeccccccc--ccccccc------cccCCeEEECCCCCCcCccEEEEEEE
Confidence 9999999999999999999999999874 3 55554321 1222110 01245689999999999999999999
Q ss_pred cCC
Q 010971 383 MSN 385 (496)
Q Consensus 383 ~~~ 385 (496)
.++
T Consensus 311 ~~~ 313 (479)
T 2frx_A 311 TQA 313 (479)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-57 Score=481.62 Aligned_cols=299 Identities=33% Similarity=0.489 Sum_probs=273.7
Q ss_pred HhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcC-CCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEec
Q 010971 66 LDLGSYYGYNEFLIGALVEMFPPVELMELIESFE-KPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYD 144 (496)
Q Consensus 66 ~~l~~~y~~p~wl~~~l~~~~~~~e~~~~lea~~-~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~ 144 (496)
..++..|++|.||+++|.+.|| +++.+|+++++ .++|+++|||++|++++++.+.|.+.|+.+.+. +|++.++.+.
T Consensus 149 ~~~~~~~~~P~w~~~~~~~~~g-~~~~~~~~a~~~~~~~~~~Rvn~~k~~~~~~~~~L~~~g~~~~~~-~~~~~~~~~~- 225 (450)
T 2yxl_A 149 EELEWKYLAPSWLIERVKGILG-DETEDFFRSVNKRHEWISIRVNTLKANVEEVIGELEEDGVEVVRS-ERVPTILKIK- 225 (450)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHG-GGHHHHHHHHHCCCCEEEEEECTTTCCHHHHHHHHHHTTCCEEEC-SSCTTEEEEE-
T ss_pred hhhhhHhcCcHHHHHHHHHHhh-HHHHHHHHhcCCCCCCEEEEEcCCCCCHHHHHHHHHhCCccceec-CccCceEEeC-
Confidence 4577889999999999999999 88999999999 999999999999999999999999999998887 8999998875
Q ss_pred CCCCCCCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q 010971 145 SQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224 (496)
Q Consensus 145 ~~~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~ 224 (496)
....+..++.|..|+|++||.+|++++.++++++|++|||+|||||++|++|++++++.+.|+|+|+++.+++.+++|++
T Consensus 226 ~~~~~~~~~~~~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~ 305 (450)
T 2yxl_A 226 GPYNFDTSSAFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVK 305 (450)
T ss_dssp SCCCTTSCHHHHTTSEEECCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCcccCchhhCceEEecCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 33578899999999999999999999999999999999999999999999999999877899999999999999999999
Q ss_pred HcCCCeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 010971 225 RMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304 (496)
Q Consensus 225 r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkp 304 (496)
++|+.++.+++.|+..++..+..+.||+||+||||||+|+++++|+++|.+++.++..++.+|..+|.++.++| +|
T Consensus 306 ~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~L----kp 381 (450)
T 2yxl_A 306 RMGIKIVKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLV----KP 381 (450)
T ss_dssp HTTCCSEEEECSCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTE----EE
T ss_pred HcCCCcEEEEEcChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhc----CC
Confidence 99999999999999887644433679999999999999999999999999999999999999999999999987 99
Q ss_pred CcEEEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEec
Q 010971 305 GGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383 (496)
Q Consensus 305 GG~LVYSTCSi~~eENE~vV~~~L~~~-~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~ 383 (496)
||+|||+|||++++|||++|.++|+++ +++++++...+ +++ ....++|++||.+++||||+|+|+|.
T Consensus 382 GG~lvy~tcs~~~~ene~~v~~~l~~~~~~~~~~~~~~~--~~~----------~~~~~~~~~P~~~~~dGff~a~l~k~ 449 (450)
T 2yxl_A 382 GGRLLYTTCSIFKEENEKNIRWFLNVHPEFKLVPLKSPY--DPG----------FLEGTMRAWPHRHSTIGFFYALLEKS 449 (450)
T ss_dssp EEEEEEEESCCCGGGTHHHHHHHHHHCSSCEECCCCSSS--EEC----------SSTTCEEECHHHHSSCCEEEEEEECC
T ss_pred CcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEeeccccc--ccc----------cCCCeEEECCCCCCCCceEEEEEEEC
Confidence 999999999999999999999999987 79988764332 111 23567999999999999999999984
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-56 Score=469.62 Aligned_cols=290 Identities=31% Similarity=0.448 Sum_probs=263.9
Q ss_pred hHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEecCC
Q 010971 67 DLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQ 146 (496)
Q Consensus 67 ~l~~~y~~p~wl~~~l~~~~~~~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~~~ 146 (496)
+++ .|++|.||+++|.+.|| +++.+|+++++.++|+++|||+++++++++.+.|...|+.+.+. +|++.++++. ..
T Consensus 139 ~~~-~~~~p~w~~~~~~~~~g-~~~~~~~~~~~~~~~~~~Rvn~~~~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~-~~ 214 (429)
T 1sqg_A 139 SDA-RYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPH-ADYPDAVRLE-TP 214 (429)
T ss_dssp SGG-GGCSCHHHHHHHHHHCT-TTHHHHHHHHTSCCCEEEEECTTTCCHHHHHHHHHHTTCCEECC-TTCTTEEEES-SC
T ss_pred hhh-hhcCcHHHHHHHHHHhh-HHHHHHHHhCCCCCCeEEEEcCCCCCHHHHHHHHHhCCCceeec-CCCCCEEEEC-CC
Confidence 345 79999999999999999 78999999999999999999999999999999999999999887 8999998774 44
Q ss_pred CCCCCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 010971 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM 226 (496)
Q Consensus 147 ~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~ 226 (496)
.++..+++|..|+|++||.+|++++.+|++++|++|||+|||||++|+++++++++ +.|+|+|+++.+++.+++|++++
T Consensus 215 ~~~~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~ 293 (429)
T 1sqg_A 215 APVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRL 293 (429)
T ss_dssp CCGGGSTTGGGTSEEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHT
T ss_pred CCcccChHHhCCCeEeeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHc
Confidence 57888999999999999999999999999999999999999999999999999876 89999999999999999999999
Q ss_pred CCCeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Q 010971 227 GVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (496)
Q Consensus 227 g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG 306 (496)
|+. +.+++.|+..++..+..+.||+||+||||||+|+++++|+++|.+++.++..++.+|.++|.+++++| +|||
T Consensus 294 g~~-~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~L----kpGG 368 (429)
T 1sqg_A 294 GMK-ATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHL----KTGG 368 (429)
T ss_dssp TCC-CEEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGE----EEEE
T ss_pred CCC-eEEEeCchhhchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc----CCCC
Confidence 984 68889999887654444689999999999999999999999999999999999999999999999987 9999
Q ss_pred EEEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEec
Q 010971 307 YIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383 (496)
Q Consensus 307 ~LVYSTCSi~~eENE~vV~~~L~~~-~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~ 383 (496)
+|||||||++++||+.+|..+|+++ ++++++. |. ....+++++||.+++||||+|+|+|.
T Consensus 369 ~lvystcs~~~~ene~~v~~~l~~~~~~~~~~~-------~~----------~~~~~~~~~P~~~~~dGff~a~l~k~ 429 (429)
T 1sqg_A 369 TLVYATCSVLPEENSLQIKAFLQRTADAELCET-------GT----------PEQPGKQNLPGAEEGDGFFYAKLIKK 429 (429)
T ss_dssp EEEEEESCCCGGGTHHHHHHHHHHCTTCEECSS-------BC----------SSSBSEEECCCTTSCCSEEEEEEEC-
T ss_pred EEEEEECCCChhhHHHHHHHHHHhCCCCEEeCC-------CC----------CCCCeEEECCCCCCCCceEEEEEEEC
Confidence 9999999999999999999999987 7888761 11 01234799999999999999999873
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-56 Score=452.26 Aligned_cols=273 Identities=32% Similarity=0.446 Sum_probs=220.7
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCC------------------cccEEEecCCCCCCCCcccccccE
Q 010971 99 EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWS------------------KVGLVVYDSQVPIGATPEYMAGFY 160 (496)
Q Consensus 99 ~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~------------------~~gl~v~~~~~~i~~~~~~~~G~~ 160 (496)
..++|+++||||+|++++++.+.|.+.|+.+++. +|+ +.++.+ ....++..+++|..|+|
T Consensus 7 ~~~~p~~lRvN~lk~~~~~~~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~~~~~~~~~~~~~G~~ 84 (309)
T 2b9e_A 7 ASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGR-ASSLDDLRALKGKHFLLDPLMPELLVF-PAQTDLHEHPLYRAGHL 84 (309)
T ss_dssp --CCCEEEEECTTTCCHHHHHHHHHHTTCEEEEE-CSSHHHHHTCCTTEEEECSSSTTEEEE-CTTCCCTTSHHHHTTSE
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHhCCCeeeec-cccccccccccccccccccCCCceEEe-CCCCCcccChHHHCCeE
Confidence 4678999999999999999999999999988776 444 334443 33457889999999999
Q ss_pred EEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCC
Q 010971 161 MLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240 (496)
Q Consensus 161 ~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~ 240 (496)
++||.+|++++.+|++++|++|||||||||+||++||++|++.|.|+|+|+++.|++.+++|++++|+.|+.+++.|+..
T Consensus 85 ~~Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~ 164 (309)
T 2b9e_A 85 ILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLA 164 (309)
T ss_dssp EECCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG
T ss_pred EEECHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHh
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999987
Q ss_pred CccccC-CCCcCEEEECCCCCCCCcccCCchhhcc--CCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 241 LPKVLG-LNTVDRVLLDAPCSGTGVISKDESVKTS--KSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 241 ~~~~~~-~~~fD~VLlDaPCSg~G~i~r~p~~k~~--~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
++.... ...||+||+||||||+|+++++|+++|. ++++++..++.+|++||.+|++++ + ||+|||||||+++
T Consensus 165 ~~~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l----~-gG~lvYsTCs~~~ 239 (309)
T 2b9e_A 165 VSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFP----S-LQRLVYSTCSLCQ 239 (309)
T ss_dssp SCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCT----T-CCEEEEEESCCCG
T ss_pred cCccccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhcc----C-CCEEEEECCCCCh
Confidence 643211 1479999999999999999999999885 478899999999999999999875 6 9999999999999
Q ss_pred cCCHHHHHHHHHhC-C-cEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEecC
Q 010971 318 TENEAVIDYALKKR-D-VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384 (496)
Q Consensus 318 eENE~vV~~~L~~~-~-~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~~ 384 (496)
+|||+||.+||+++ + ++++++...+...|+.. .+....|+|++||.+++||||+|+|+|.+
T Consensus 240 ~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~r~~P~~~~~dGfF~A~l~k~~ 302 (309)
T 2b9e_A 240 EENEDVVRDALQQNPGAFRLAPALPAWPHRGLST------FPGAEHCLRASPETTLSSGFFVAVIERVE 302 (309)
T ss_dssp GGTHHHHHHHHTTSTTTEEECCCCTTCCCBCCSS------STTGGGSEEECHHHHSSCSEEEEEEEEC-
T ss_pred HHhHHHHHHHHHhCCCcEEEeccccccccccccc------cCCCCCeEEECCCCCCCCCeEEEEEEECC
Confidence 99999999999987 5 89887643333233321 12345789999999999999999999975
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-55 Score=457.43 Aligned_cols=290 Identities=26% Similarity=0.365 Sum_probs=231.6
Q ss_pred HhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCc-----------cC--------CCC-cC-CcccE--
Q 010971 84 EMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVN-----------LD--------PLS-KW-SKVGL-- 140 (496)
Q Consensus 84 ~~~~~~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~-----------~~--------p~~-~~-~~~gl-- 140 (496)
..|| ++|..|.+++..+++..+|+|++. ..+.+...|...|.. ++ |.. .| .+..+
T Consensus 29 ~~~G-~~W~~~r~aL~~~~~~~a~vN~f~-~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~ 106 (359)
T 4fzv_A 29 VQFG-DLWPSIRVSLLSEQKYGALVNNFA-AWDHVSAKLEQLSAKDFVNEAISHWELQSEGGQSAAPSPASWACSPNLRC 106 (359)
T ss_dssp HHHG-GGHHHHHHHHTSCCCCEEEECTTS-CHHHHHHHHHHTTCEEHHHHHHHTTTCCC-----CCSSCHHHHSCSSCCE
T ss_pred HHhh-hhhHHHHHHHcCcchhEEEeccCC-ChHHHHHHHHhccCccchhhhhcccccccccccccCCCcccccCCccceE
Confidence 4567 579999999999999999999985 568888888877652 00 000 11 11122
Q ss_pred EEecCCCCCCCCcccccc-----cEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHH
Q 010971 141 VVYDSQVPIGATPEYMAG-----FYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASR 215 (496)
Q Consensus 141 ~v~~~~~~i~~~~~~~~G-----~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~r 215 (496)
+++ ....+..+|.|..| .|++||++||+++.+|+|+||++||||||||||||+|||++|. .|.|+|+|+++.|
T Consensus 107 ~~~-~~g~~~~~p~~~~g~~~vqd~~iQd~aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~-~~~l~A~D~~~~R 184 (359)
T 4fzv_A 107 FTF-DRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGC-CRNLAANDLSPSR 184 (359)
T ss_dssp EEC-CTTCCCCCCCCCBCTTSSBSEEEECGGGHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTC-EEEEEEECSCHHH
T ss_pred Eec-CCCChhcCCCcccCceeccchhhhCHHHHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcC-CCcEEEEcCCHHH
Confidence 222 23356667776654 5888999999999999999999999999999999999999875 4889999999999
Q ss_pred HHHHHHHHHHcCC------CeEEEEecCCCCCccccCCCCcCEEEECCCCCCC--CcccCCchhhccCCHHHHHHHHHHH
Q 010971 216 LKSLTANLHRMGV------TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT--GVISKDESVKTSKSLEDIQKCSYLQ 287 (496)
Q Consensus 216 l~~l~~nl~r~g~------~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~--G~i~r~p~~k~~~s~~~i~~l~~lQ 287 (496)
++.+++|++++|+ .++.+++.|++.++... .+.||+||+||||||+ |+++++|+++|.+++.++..++.+|
T Consensus 185 ~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~-~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ 263 (359)
T 4fzv_A 185 IARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELE-GDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQ 263 (359)
T ss_dssp HHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHS-TTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHH
T ss_pred HHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhc-cccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHH
Confidence 9999999999987 36899999999886543 3789999999999997 8899999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhC-CcEEeec---CCcCCCCCcccccccccCCCcCCee
Q 010971 288 KQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPC---GLDFGRQGFVRFREHRFHPSLEKTR 363 (496)
Q Consensus 288 ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~-~~~lv~~---~~~~~~~g~~~~~~~~f~~~~~~~~ 363 (496)
++||.+|+.+| ||||+|||||||++++|||+||++||+++ ++..+++ .+.....++ .....|.+....++
T Consensus 264 ~~iL~~a~~~l----kpGG~LVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~g~ 337 (359)
T 4fzv_A 264 VQLLAAGLLAT----KPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVF--MDTFCFFSSCQVGE 337 (359)
T ss_dssp HHHHHHHHHTE----EEEEEEEEEESCCCTTTTHHHHHHHHHHHHHHHCCCEEECCCHHHHHHH--TTTCEECTTCSSSE
T ss_pred HHHHHHHHhcC----CCCcEEEEEeCCCchhhCHHHHHHHHHhCCCCccccccccccccccccc--ccccccCccccceE
Confidence 99999999997 99999999999999999999999999875 3222221 111000000 12234566777889
Q ss_pred EecCCCC-CCCceEEEEEEecC
Q 010971 364 RFYPHVH-NMDGFFVAKLKKMS 384 (496)
Q Consensus 364 r~~P~~~-~~dGFFvA~l~K~~ 384 (496)
|++||.+ ++||||+|+|+|.+
T Consensus 338 r~~P~~~~~~gGFFiA~L~KvS 359 (359)
T 4fzv_A 338 LVIPNLMANFGPMYFCKMRRLT 359 (359)
T ss_dssp EEECBTTBCCCCEEEEEEEECC
T ss_pred EECCCCCCCCCCEEEEEEEECC
Confidence 9999976 67889999999975
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-50 Score=397.46 Aligned_cols=270 Identities=43% Similarity=0.642 Sum_probs=221.7
Q ss_pred HHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEecCCCCCCCCcccccccEEEeCCcchhHHHhc
Q 010971 95 IESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMAL 174 (496)
Q Consensus 95 lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~~~~~i~~~~~~~~G~~~iQd~sS~l~v~~L 174 (496)
|.++..++|+++|||+++++++++.+.|.+.|+.+++ +|++.++.+.+.+.++..++.|..|.|++||.+|++++.+|
T Consensus 2 m~~~~~~~~~~~rvn~~~~~~~~~~~~l~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~l~~~~l 79 (274)
T 3ajd_A 2 MIVYKGEKMQFIRVNTLKINPEVLKKRLENKGVVLEK--TFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSISSMIPPIVL 79 (274)
T ss_dssp -------CCEEEEECTTTCCHHHHHHHHHTTTCEEEE--CSSTTEEEEEECSSCTTSSHHHHTTSEEECCSGGGHHHHHH
T ss_pred hhhhCCCCCeEEEEeCCCCCHHHHHHHHHHCCCeecC--CCCCceEEEecCCCCcccChhhhCCeEEEeCHHHHHHHHHh
Confidence 4566789999999999999999999999999998887 79999988744456788999999999999999999999999
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--CCCCcCE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--GLNTVDR 252 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--~~~~fD~ 252 (496)
++++|++|||+|||||++|+++++++++.+.|+|+|+++.+++.+++|++++|+.++.+++.|+..++..+ ..+.||+
T Consensus 80 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~ 159 (274)
T 3ajd_A 80 NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDK 159 (274)
T ss_dssp CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCE
Confidence 99999999999999999999999999877999999999999999999999999999999999998765321 1368999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhC-
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR- 331 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~- 331 (496)
||+||||||+|+++++| .|+.+++..+...|.++|.+++++| +|||+|||+|||++++|||++|.++|+++
T Consensus 160 Vl~d~Pcs~~g~~~~~p----~~~~~~~~~~~~~~~~~l~~~~~~L----kpgG~lv~stcs~~~~ene~~v~~~l~~~~ 231 (274)
T 3ajd_A 160 ILLDAPCSGNIIKDKNR----NVSEEDIKYCSLRQKELIDIGIDLL----KKDGELVYSTCSMEVEENEEVIKYILQKRN 231 (274)
T ss_dssp EEEEECCC----------------HHHHTGGGTCHHHHHHHHHHHE----EEEEEEEEEESCCCTTSSHHHHHHHHHHCS
T ss_pred EEEcCCCCCCcccccCC----CCCHHHHHHHHHHHHHHHHHHHHhC----CCCCEEEEEECCCChHHhHHHHHHHHHhCC
Confidence 99999999999999998 6788999999999999999999997 99999999999999999999999999876
Q ss_pred CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEec
Q 010971 332 DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383 (496)
Q Consensus 332 ~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~ 383 (496)
+++++++... ..+|+..|.. ....++|++||.++ ||+|+|+|.
T Consensus 232 ~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~P~~~~---ff~a~l~k~ 274 (274)
T 3ajd_A 232 DVELIIIKAN-EFKGINIKEG-----YIKGTLRVFPPNEP---FFIAKLRKI 274 (274)
T ss_dssp SEEEECCCST-TCTTSCEEEC-----SSTTCEEECTTSCC---EEEEEEEEC
T ss_pred CcEEecCccc-cccCcccccc-----cCCCeEEECCCCCC---EEEEEEEEC
Confidence 7898887532 1244433321 23578999999764 999999984
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-18 Score=181.33 Aligned_cols=163 Identities=19% Similarity=0.222 Sum_probs=130.3
Q ss_pred CCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe
Q 010971 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (496)
Q Consensus 151 ~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n 230 (496)
....+++|.|+.|..+..++...+ ++|.+|||+|||+|++|+++|.. + ..|+|+|+|+.+++.+++|++.+|+.+
T Consensus 189 ~~~~~~tG~f~dqr~~r~~l~~~~--~~g~~VLDlg~GtG~~sl~~a~~--g-a~V~avDis~~al~~a~~n~~~ng~~~ 263 (393)
T 4dmg_A 189 LALAQKTGYYLDQRENRRLFEAMV--RPGERVLDVYSYVGGFALRAARK--G-AYALAVDKDLEALGVLDQAALRLGLRV 263 (393)
T ss_dssp TTTCCTTSSCGGGHHHHHHHHTTC--CTTCEEEEESCTTTHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHHHHHTCCC
T ss_pred chhccccCcCCCHHHHHHHHHHHh--cCCCeEEEcccchhHHHHHHHHc--C-CeEEEEECCHHHHHHHHHHHHHhCCCC
Confidence 356788999999998877766543 46999999999999999999875 3 349999999999999999999999974
Q ss_pred EEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 010971 231 TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 231 v~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVY 310 (496)
.+.+.|+..+..... +.||+|++||||... +..++......+.+++..++++| +|||+|+|
T Consensus 264 -~~~~~D~~~~l~~~~-~~fD~Ii~dpP~f~~-------------~~~~~~~~~~~~~~ll~~a~~~L----kpGG~Lv~ 324 (393)
T 4dmg_A 264 -DIRHGEALPTLRGLE-GPFHHVLLDPPTLVK-------------RPEELPAMKRHLVDLVREALRLL----AEEGFLWL 324 (393)
T ss_dssp -EEEESCHHHHHHTCC-CCEEEEEECCCCCCS-------------SGGGHHHHHHHHHHHHHHHHHTE----EEEEEEEE
T ss_pred -cEEEccHHHHHHHhc-CCCCEEEECCCcCCC-------------CHHHHHHHHHHHHHHHHHHHHhc----CCCCEEEE
Confidence 355888876543332 349999999998442 33467778888899999999987 99999999
Q ss_pred EeCCCCCcCCH--HHHHHHHHhC--CcEEee
Q 010971 311 STCSIMVTENE--AVIDYALKKR--DVKLVP 337 (496)
Q Consensus 311 STCSi~~eENE--~vV~~~L~~~--~~~lv~ 337 (496)
+|||....+++ .+|..++... .++++.
T Consensus 325 ~s~s~~~~~~~f~~~v~~a~~~~g~~~~i~~ 355 (393)
T 4dmg_A 325 SSCSYHLRLEDLLEVARRAAADLGRRLRVHR 355 (393)
T ss_dssp EECCTTSCHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHHhCCeEEEEE
Confidence 99999988877 6676666543 455554
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=162.27 Aligned_cols=133 Identities=14% Similarity=0.139 Sum_probs=104.7
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc-cCCCCcCEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-LGLNTVDRV 253 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~-~~~~~fD~V 253 (496)
.+++|++|||+|||||++|.++|+++++.|.|+|+|+++.+++.+...+.+. .|+.++.+|++..... ...+.||+|
T Consensus 73 ~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~~~~~~~~~~~~D~I 150 (232)
T 3id6_C 73 PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARFPQSYKSVVENVDVL 150 (232)
T ss_dssp SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTCGGGTTTTCCCEEEE
T ss_pred CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccccchhhhccccceEEE
Confidence 3789999999999999999999999988899999999999987777666553 5899999999865321 113689999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHH-hhhhcCCCCcEEEEE---eC---CCCCcCCHHHHHH
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAID-MVDANSKSGGYIVYS---TC---SIMVTENEAVIDY 326 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~-~l~~~lkpGG~LVYS---TC---Si~~eENE~vV~~ 326 (496)
++|+|- ..|.++|...+. +| ||||+||++ +| ++.++||...+..
T Consensus 151 ~~d~a~-------------------------~~~~~il~~~~~~~L----kpGG~lvisik~~~~d~t~~~~e~~~~~~~ 201 (232)
T 3id6_C 151 YVDIAQ-------------------------PDQTDIAIYNAKFFL----KVNGDMLLVIKARSIDVTKDPKEIYKTEVE 201 (232)
T ss_dssp EECCCC-------------------------TTHHHHHHHHHHHHE----EEEEEEEEEEC-------CCSSSSTTHHHH
T ss_pred EecCCC-------------------------hhHHHHHHHHHHHhC----CCCeEEEEEEccCCcccCCCHHHHHHHHHH
Confidence 999871 124455554444 65 999999977 89 9999999999999
Q ss_pred HHHhCCcEEeec
Q 010971 327 ALKKRDVKLVPC 338 (496)
Q Consensus 327 ~L~~~~~~lv~~ 338 (496)
+|+.++|+++..
T Consensus 202 ~L~~~gf~~~~~ 213 (232)
T 3id6_C 202 KLENSNFETIQI 213 (232)
T ss_dssp HHHHTTEEEEEE
T ss_pred HHHHCCCEEEEE
Confidence 999888887764
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.7e-16 Score=149.94 Aligned_cols=166 Identities=16% Similarity=0.178 Sum_probs=116.3
Q ss_pred cccEEEeCCc-------chhHHHhcCCC-CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q 010971 157 AGFYMLQSAS-------SFLPVMALAPQ-EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV 228 (496)
Q Consensus 157 ~G~~~iQd~s-------S~l~v~~L~~~-~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~ 228 (496)
.++.++|+.. +.+.+.++.+. ++.+|||+|||+|..++.+++... +.|+|+|+++..++.+++|+..+++
T Consensus 20 ~~~~i~q~~~~~~~~~d~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~ 97 (259)
T 3lpm_A 20 ENLRIIQSPSVFSFSIDAVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYNQL 97 (259)
T ss_dssp TTEEEEEBTTTBCCCHHHHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCccCcHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHHCCC
Confidence 3556667766 56777777888 899999999999999999988742 4999999999999999999999999
Q ss_pred C-eEEEEecCCCCCccccCCCCcCEEEECCCCCCC---CcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 010971 229 T-NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT---GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304 (496)
Q Consensus 229 ~-nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~---G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkp 304 (496)
. ++.+++.|+..++..+..+.||+|++||||... |....++....... ........++..+.++| +|
T Consensus 98 ~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~-----~~~~~~~~~l~~~~~~L----kp 168 (259)
T 3lpm_A 98 EDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARH-----EVMCTLEDTIRVAASLL----KQ 168 (259)
T ss_dssp TTTEEEECSCGGGGGGTSCTTCEEEEEECCCC----------------------------HHHHHHHHHHHHHE----EE
T ss_pred cccEEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhc-----cccCCHHHHHHHHHHHc----cC
Confidence 7 499999999887654445789999999999766 44433322211110 01122346788888886 99
Q ss_pred CcEEEEEeCCCCCcCCHHHHHHHHHhCCcEEee
Q 010971 305 GGYIVYSTCSIMVTENEAVIDYALKKRDVKLVP 337 (496)
Q Consensus 305 GG~LVYSTCSi~~eENE~vV~~~L~~~~~~lv~ 337 (496)
||++++. .+.+....+..++...++.+..
T Consensus 169 gG~l~~~----~~~~~~~~~~~~l~~~~~~~~~ 197 (259)
T 3lpm_A 169 GGKANFV----HRPERLLDIIDIMRKYRLEPKR 197 (259)
T ss_dssp EEEEEEE----ECTTTHHHHHHHHHHTTEEEEE
T ss_pred CcEEEEE----EcHHHHHHHHHHHHHCCCceEE
Confidence 9999984 3445555566667776655443
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-17 Score=170.73 Aligned_cols=163 Identities=24% Similarity=0.284 Sum_probs=128.6
Q ss_pred CCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe
Q 010971 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (496)
Q Consensus 151 ~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n 230 (496)
....+..|+|+.|...+.+... . +|.+|||+|||+|+.+++++.. .+.|+++|+++..++.+++|+..+|+.+
T Consensus 186 ~~~~~~~g~f~~~~~~~~~~~~---~-~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~ 258 (382)
T 1wxx_A 186 LRAGQKTGAYLDQRENRLYMER---F-RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGN 258 (382)
T ss_dssp CSTTSCCCCCGGGHHHHHHGGG---C-CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred chhcccCccccchHHHHHHHHh---c-CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCC
Confidence 3456778988888766544333 3 7899999999999999999987 3689999999999999999999999999
Q ss_pred EEEEecCCCCCcccc--CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEE
Q 010971 231 TIVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI 308 (496)
Q Consensus 231 v~v~~~D~~~~~~~~--~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~L 308 (496)
+.++++|+..+...+ ....||+|++|||+.+.+ ...+......+..++..++++| +|||+|
T Consensus 259 ~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~~~~-------------~~~~~~~~~~~~~~l~~~~~~L----kpgG~l 321 (382)
T 1wxx_A 259 VRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKG-------------KKDVERAYRAYKEVNLRAIKLL----KEGGIL 321 (382)
T ss_dssp EEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCS-------------TTSHHHHHHHHHHHHHHHHHTE----EEEEEE
T ss_pred ceEEECCHHHHHHHHHhcCCCeeEEEECCCCCCCC-------------hhHHHHHHHHHHHHHHHHHHhc----CCCCEE
Confidence 999999987653321 136899999999986543 2345566777888999999987 999999
Q ss_pred EEEeCCCCCcCC--HHHHHHHHHhC--CcEEee
Q 010971 309 VYSTCSIMVTEN--EAVIDYALKKR--DVKLVP 337 (496)
Q Consensus 309 VYSTCSi~~eEN--E~vV~~~L~~~--~~~lv~ 337 (496)
+|+||+....++ +.++...+... .++++.
T Consensus 322 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~ 354 (382)
T 1wxx_A 322 ATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVE 354 (382)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 999999888765 56666555544 456654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.3e-17 Score=180.69 Aligned_cols=174 Identities=14% Similarity=0.124 Sum_probs=130.3
Q ss_pred CCcccEEEecCCCCCCCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHH
Q 010971 135 WSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKAS 214 (496)
Q Consensus 135 ~~~~gl~v~~~~~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~ 214 (496)
+.+.|+.+. +.....+.+|.|+.|.....++.... +|.+|||+|||+|+.|++++. .+...|+++|+|+.
T Consensus 504 v~E~g~~~~-----v~~~~~~~tG~f~d~r~~r~~l~~~~---~g~~VLDlg~GtG~~sl~aa~--~ga~~V~aVD~s~~ 573 (703)
T 3v97_A 504 VTEYNAHLW-----VNLTDYLDTGLFLDHRIARRMLGQMS---KGKDFLNLFSYTGSATVHAGL--GGARSTTTVDMSRT 573 (703)
T ss_dssp EEETTEEEE-----ECSSSSSSCSCCGGGHHHHHHHHHHC---TTCEEEEESCTTCHHHHHHHH--TTCSEEEEEESCHH
T ss_pred EEECCEEEE-----EeccccccCCCcccHHHHHHHHHHhc---CCCcEEEeeechhHHHHHHHH--CCCCEEEEEeCCHH
Confidence 445676652 22345678899999998777766543 689999999999999998886 34568999999999
Q ss_pred HHHHHHHHHHHcCCC--eEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHH
Q 010971 215 RLKSLTANLHRMGVT--NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLIL 292 (496)
Q Consensus 215 rl~~l~~nl~r~g~~--nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~ 292 (496)
.++.+++|++.+|+. ++.++++|+..+.... .+.||+|++||||.+.+.. ..++......+.+|+.
T Consensus 574 al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~-~~~fD~Ii~DPP~f~~~~~-----------~~~~~~~~~~~~~ll~ 641 (703)
T 3v97_A 574 YLEWAERNLRLNGLTGRAHRLIQADCLAWLREA-NEQFDLIFIDPPTFSNSKR-----------MEDAFDVQRDHLALMK 641 (703)
T ss_dssp HHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHC-CCCEEEEEECCCSBC------------------CCBHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccceEEEecCHHHHHHhc-CCCccEEEECCccccCCcc-----------chhHHHHHHHHHHHHH
Confidence 999999999999997 6999999987753322 3689999999999764421 0111234456788999
Q ss_pred HHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEEeec
Q 010971 293 AAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 293 ~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~lv~~ 338 (496)
.+.++| +|||+|++|+|+-....+++. +...++++..+
T Consensus 642 ~a~~~L----kpgG~L~~s~~~~~~~~~~~~----l~~~g~~~~~i 679 (703)
T 3v97_A 642 DLKRLL----RAGGTIMFSNNKRGFRMDLDG----LAKLGLKAQEI 679 (703)
T ss_dssp HHHHHE----EEEEEEEEEECCTTCCCCHHH----HHHTTEEEEEC
T ss_pred HHHHhc----CCCcEEEEEECCcccccCHHH----HHHcCCceeee
Confidence 999987 999999999999666666543 45566665444
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-16 Score=165.52 Aligned_cols=159 Identities=21% Similarity=0.204 Sum_probs=123.6
Q ss_pred cccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eE
Q 010971 153 PEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NT 231 (496)
Q Consensus 153 ~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv 231 (496)
..+..|+|..|.....++..++ ++|.+|||+|||+|+.+++++.. +.+.|+++|+++..++.+++|+..+|+. ++
T Consensus 194 ~~~~tg~f~~~~~~~~~~~~~~--~~~~~VLDl~~G~G~~~~~la~~--g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v 269 (396)
T 2as0_A 194 RGQKTGFFLDQRENRLALEKWV--QPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRM 269 (396)
T ss_dssp SSSSSCCCSTTHHHHHHHGGGC--CTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGE
T ss_pred cccccCccCCHHHHHHHHHHHh--hCCCeEEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccc
Confidence 3567788877766555444332 47899999999999999999875 3468999999999999999999999998 79
Q ss_pred EEEecCCCCCcccc--CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEE
Q 010971 232 IVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309 (496)
Q Consensus 232 ~v~~~D~~~~~~~~--~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LV 309 (496)
.++..|+..+...+ ....||+|++|||+.+. +...+......+..++..++.+| +|||+|+
T Consensus 270 ~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~~~-------------~~~~~~~~~~~~~~~l~~~~~~L----kpgG~lv 332 (396)
T 2as0_A 270 KFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQ-------------HEKDLKAGLRAYFNVNFAGLNLV----KDGGILV 332 (396)
T ss_dssp EEEESCHHHHHHHHHHTTCCEEEEEECCCCSCS-------------SGGGHHHHHHHHHHHHHHHHTTE----EEEEEEE
T ss_pred eEEECCHHHHHHHHHhhCCCCCEEEECCCCCCC-------------CHHHHHHHHHHHHHHHHHHHHhc----CCCcEEE
Confidence 99999987653221 13689999999997653 23345566677888999999987 9999999
Q ss_pred EEeCCCCCcCC--HHHHHHHHHhCC
Q 010971 310 YSTCSIMVTEN--EAVIDYALKKRD 332 (496)
Q Consensus 310 YSTCSi~~eEN--E~vV~~~L~~~~ 332 (496)
|+||+.+..++ +.++...+...+
T Consensus 333 ~~~~~~~~~~~~~~~~v~~~~~~~~ 357 (396)
T 2as0_A 333 TCSCSQHVDLQMFKDMIIAAGAKAG 357 (396)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC
Confidence 99999876543 566665555544
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.5e-17 Score=168.09 Aligned_cols=167 Identities=17% Similarity=0.192 Sum_probs=127.1
Q ss_pred CCCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q 010971 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV 228 (496)
Q Consensus 149 i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~ 228 (496)
+.....+.+|+|..|.....++..+ .+|.+|||+|||+|++++++|.. +.+.|+++|+++..++.+++|+..+|+
T Consensus 194 v~~~~~~~tgff~~~~~~~~~l~~~---~~~~~VLDl~cG~G~~sl~la~~--g~~~V~~vD~s~~al~~a~~n~~~ngl 268 (396)
T 3c0k_A 194 VDIQHGHKTGYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKL 268 (396)
T ss_dssp ECTTTSSTTSSCGGGHHHHHHHHHH---CTTCEEEEESCTTCSHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred EeccccccCCcCcCHHHHHHHHHHh---hCCCeEEEeeccCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 3445678889998888776665554 57899999999999999999875 346899999999999999999999999
Q ss_pred -C-eEEEEecCCCCCcccc--CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 010971 229 -T-NTIVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304 (496)
Q Consensus 229 -~-nv~v~~~D~~~~~~~~--~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkp 304 (496)
. ++.++..|+..+...+ ....||+|++|||+.+.+-- .+......+..++..++.+| +|
T Consensus 269 ~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~-------------~~~~~~~~~~~~l~~~~~~L----kp 331 (396)
T 3c0k_A 269 DLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKS-------------QLMGACRGYKDINMLAIQLL----NE 331 (396)
T ss_dssp CGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSS-------------SSSCCCTHHHHHHHHHHHTE----EE
T ss_pred CccceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCChh-------------HHHHHHHHHHHHHHHHHHhc----CC
Confidence 7 8999999987653221 13589999999998664310 01112234567888899887 99
Q ss_pred CcEEEEEeCCCCCc--CCHHHHHHHHHhC--CcEEee
Q 010971 305 GGYIVYSTCSIMVT--ENEAVIDYALKKR--DVKLVP 337 (496)
Q Consensus 305 GG~LVYSTCSi~~e--ENE~vV~~~L~~~--~~~lv~ 337 (496)
||+|++|+|+.+.. ++..++...+... .++++.
T Consensus 332 gG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~ 368 (396)
T 3c0k_A 332 GGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_dssp EEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 99999999998776 5677887655544 455554
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.4e-17 Score=167.91 Aligned_cols=188 Identities=14% Similarity=0.049 Sum_probs=123.3
Q ss_pred EeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc---------------
Q 010971 162 LQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--------------- 226 (496)
Q Consensus 162 iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~--------------- 226 (496)
.|.....+.+.++...+|.+|||+|||+|..+++++..+++ ..|+++|+++.+++.+++|++++
T Consensus 31 ~~~~nr~l~~~~l~~~~~~~VLDl~aGtG~~~l~~a~~~~~-~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~ 109 (378)
T 2dul_A 31 RMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETPA-EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILK 109 (378)
T ss_dssp GGHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSSC-SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEE
T ss_pred chHHHHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHhccccccccccccccc
Confidence 34444444333333237899999999999999999998754 57999999999999999999999
Q ss_pred CCCeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Q 010971 227 GVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (496)
Q Consensus 227 g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG 306 (496)
|+.++.+++.|+..+.... ...||+|++||||+. ..+|..|++.+ ++||
T Consensus 110 gl~~i~v~~~Da~~~~~~~-~~~fD~I~lDP~~~~--------------------------~~~l~~a~~~l----k~gG 158 (378)
T 2dul_A 110 GEKTIVINHDDANRLMAER-HRYFHFIDLDPFGSP--------------------------MEFLDTALRSA----KRRG 158 (378)
T ss_dssp SSSEEEEEESCHHHHHHHS-TTCEEEEEECCSSCC--------------------------HHHHHHHHHHE----EEEE
T ss_pred CCCceEEEcCcHHHHHHhc-cCCCCEEEeCCCCCH--------------------------HHHHHHHHHhc----CCCC
Confidence 8888999999997764332 257999999999863 25688888887 9999
Q ss_pred EEEEEeCCCCCcCCHHHHHHHHHhCCcEEeecCCcCCCCCcccc-cccccCCCcCCeeEecCCCCCCCceEEEEEEecC
Q 010971 307 YIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRF-REHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384 (496)
Q Consensus 307 ~LVYSTCSi~~eENE~vV~~~L~~~~~~lv~~~~~~~~~g~~~~-~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~~ 384 (496)
++|.||+-....+.......+.+++.......... ..+.... .... .......+.+.|.....+|||++++.|.-
T Consensus 159 -~l~vt~td~~~l~~~~~~~~~~~yg~~p~~~~~~~-e~~~ri~l~~~~-~~~~~~g~~i~P~~~~~~~~y~rv~vrv~ 234 (378)
T 2dul_A 159 -ILGVTATDGAPLCGAHPRACLRKYLAVPLRGELCH-EVGTRILVGVIA-RYAAKYDLGIDVILAYYKDHYFRAFVKLK 234 (378)
T ss_dssp -EEEEEECCHHHHTTSSHHHHHHHHSSBCCCSTTHH-HHHHHHHHHHHH-HHHHTTTEEEEEEEEEEETTEEEEEEEEE
T ss_pred -EEEEEeecchhhccccHHHHHHHccCCCccccccc-chhHHHHHHHHH-HhcCcCCcEEEEEEEEecCCEEEEEEEEe
Confidence 78899975543222234444555443222110000 0000000 0000 00001235677766667899999998764
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=143.98 Aligned_cols=167 Identities=16% Similarity=0.155 Sum_probs=117.5
Q ss_pred CCCHHHHHHHHHHcCCccCCC----------CcCCcccEEEecCCCCCCCCcccccccEEEeCCcch-hHHHhcC--CCC
Q 010971 112 KTRRRDLADVLINRGVNLDPL----------SKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSF-LPVMALA--PQE 178 (496)
Q Consensus 112 k~~~~~l~~~L~~~Gv~~~p~----------~~~~~~gl~v~~~~~~i~~~~~~~~G~~~iQd~sS~-l~v~~L~--~~~ 178 (496)
.++++++.+.|...|+..++. ..|.+.+ .....+.+..+...++++... ....++. +.+
T Consensus 6 ~~~~~~l~~~l~~~g~~~~~~~~~a~~~~~r~~f~~~~--------~y~~~~~~~~~~~~~~~p~~~~~~l~~l~~~~~~ 77 (226)
T 1i1n_A 6 GASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCN--------PYMDSPQSIGFQATISAPHMHAYALELLFDQLHE 77 (226)
T ss_dssp CSSHHHHHHHHHHTTSCCSHHHHHHHHTSCGGGTCSSC--------TTSSSCEEEETTEEECCHHHHHHHHHHTTTTSCT
T ss_pred CchHHHHHHHHHHcCCcCCHHHHHHHHhCCHHHcCCCc--------cCCCCccccCCCceecCHHHHHHHHHHHHhhCCC
Confidence 356789999999999853221 0121111 112223333333445554421 2233443 778
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEecCCCCCccccCCCCcCEE
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-----VTNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g-----~~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
+.+|||+|||+|..+.+++..+++.+.|+++|+++.+++.+++++.++| ..++.+...|+...+.. ...||+|
T Consensus 78 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~i 155 (226)
T 1i1n_A 78 GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE--EAPYDAI 155 (226)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG--GCCEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc--CCCcCEE
Confidence 9999999999999999999998666799999999999999999999977 46799999998754322 3679999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN 320 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eEN 320 (496)
++++||.. ++..+.+.| +|||+||+++|+...+++
T Consensus 156 ~~~~~~~~----------------------------~~~~~~~~L----kpgG~lv~~~~~~~~~~~ 190 (226)
T 1i1n_A 156 HVGAAAPV----------------------------VPQALIDQL----KPGGRLILPVGPAGGNQM 190 (226)
T ss_dssp EECSBBSS----------------------------CCHHHHHTE----EEEEEEEEEESCTTSCEE
T ss_pred EECCchHH----------------------------HHHHHHHhc----CCCcEEEEEEecCCCceE
Confidence 99998721 234555665 999999999998765444
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-15 Score=142.18 Aligned_cols=169 Identities=14% Similarity=0.148 Sum_probs=118.5
Q ss_pred EeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCC
Q 010971 162 LQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNE 240 (496)
Q Consensus 162 iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~ 240 (496)
+++....+...++...++.+|||+|||+|..|++++..+++.+.|+++|+++..++.+++|+.++|+.+ +.++.+|+..
T Consensus 42 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 121 (221)
T 3u81_A 42 VGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQD 121 (221)
T ss_dssp CCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHH
Confidence 344444555555556678999999999999999999988767899999999999999999999999974 9999999865
Q ss_pred CccccC----CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 241 LPKVLG----LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 241 ~~~~~~----~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
+...+. .+.||+|++|+++... ....+++..+ ++ |+|||+||+.+|.+.
T Consensus 122 ~l~~~~~~~~~~~fD~V~~d~~~~~~----------------------~~~~~~~~~~-~~----LkpgG~lv~~~~~~~ 174 (221)
T 3u81_A 122 LIPQLKKKYDVDTLDMVFLDHWKDRY----------------------LPDTLLLEKC-GL----LRKGTVLLADNVIVP 174 (221)
T ss_dssp HGGGTTTTSCCCCCSEEEECSCGGGH----------------------HHHHHHHHHT-TC----CCTTCEEEESCCCCC
T ss_pred HHHHHHHhcCCCceEEEEEcCCcccc----------------------hHHHHHHHhc-cc----cCCCeEEEEeCCCCc
Confidence 422222 1589999999763210 1112334443 44 599999999998853
Q ss_pred CcCCHHHHHHHHHhCCcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEec
Q 010971 317 VTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383 (496)
Q Consensus 317 ~eENE~vV~~~L~~~~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~ 383 (496)
......+++.....++...+ -..+|.....|||++++++..
T Consensus 175 --~~~~~~~~l~~~~~~~~~~~------------------------~~~~~~~~~~dG~~~~~~~g~ 215 (221)
T 3u81_A 175 --GTPDFLAYVRGSSSFECTHY------------------------SSYLEYMKVVDGLEKAIYQGP 215 (221)
T ss_dssp --CCHHHHHHHHHCTTEEEEEE------------------------EEEETTTTEEEEEEEEEECCC
T ss_pred --chHHHHHHHhhCCCceEEEc------------------------ccccccCCCCCceEEEEEeCC
Confidence 34555555444333332211 123455567899999998754
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=8.4e-15 Score=144.58 Aligned_cols=158 Identities=12% Similarity=0.101 Sum_probs=115.5
Q ss_pred EEEeCCcchhHHHhcCC--CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecC
Q 010971 160 YMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD 237 (496)
Q Consensus 160 ~~iQd~sS~l~v~~L~~--~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D 237 (496)
++.+..+..++..++.. .++.+|||+|||+|..+..++..++ ...|+|+|+|+..++.+++|+.++|+.++.+.+.|
T Consensus 89 ~ipr~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d 167 (276)
T 2b3t_A 89 LIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSD 167 (276)
T ss_dssp CCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCS
T ss_pred cccCchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcc
Confidence 33333344444333321 5788999999999999999998874 47999999999999999999999999899999999
Q ss_pred CCCCccccCCCCcCEEEECCCCCCCC-------cccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 010971 238 GNELPKVLGLNTVDRVLLDAPCSGTG-------VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 238 ~~~~~~~~~~~~fD~VLlDaPCSg~G-------~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVY 310 (496)
..... ..+.||+|+++|||.+.+ ++...|...+.-..+. ...+..++..+.++| +|||++++
T Consensus 168 ~~~~~---~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g----~~~~~~~l~~~~~~L----kpgG~l~~ 236 (276)
T 2b3t_A 168 WFSAL---AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSG----MADIVHIIEQSRNAL----VSGGFLLL 236 (276)
T ss_dssp TTGGG---TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHH----THHHHHHHHHHGGGE----EEEEEEEE
T ss_pred hhhhc---ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcH----HHHHHHHHHHHHHhc----CCCCEEEE
Confidence 87642 236899999999999874 4445555544322222 234467888888876 99999999
Q ss_pred EeCCCCCcCCHHHHHHHHHhCCc
Q 010971 311 STCSIMVTENEAVIDYALKKRDV 333 (496)
Q Consensus 311 STCSi~~eENE~vV~~~L~~~~~ 333 (496)
..+. .+.+.+..+++..++
T Consensus 237 ~~~~----~~~~~~~~~l~~~Gf 255 (276)
T 2b3t_A 237 EHGW----QQGEAVRQAFILAGY 255 (276)
T ss_dssp ECCS----SCHHHHHHHHHHTTC
T ss_pred EECc----hHHHHHHHHHHHCCC
Confidence 7543 345556666766544
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-15 Score=148.06 Aligned_cols=121 Identities=14% Similarity=0.174 Sum_probs=96.1
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCC-ccc
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNEL-PKV 244 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~-~~~ 244 (496)
..+...++...++.+|||+|||+|..|.+++..+++.+.|+++|+++.+++.+++++.+.|+. ++.+..+|+..+ +..
T Consensus 52 ~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~ 131 (248)
T 3tfw_A 52 GQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESL 131 (248)
T ss_dssp HHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTC
T ss_pred HHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhc
Confidence 344444445567899999999999999999999876789999999999999999999999997 699999998764 322
Q ss_pred cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 245 ~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
...+.||+|++|+++.. ...+|..+.++| +|||+||+.++.+.
T Consensus 132 ~~~~~fD~V~~d~~~~~-------------------------~~~~l~~~~~~L----kpGG~lv~~~~~~~ 174 (248)
T 3tfw_A 132 GECPAFDLIFIDADKPN-------------------------NPHYLRWALRYS----RPGTLIIGDNVVRD 174 (248)
T ss_dssp CSCCCCSEEEECSCGGG-------------------------HHHHHHHHHHTC----CTTCEEEEECCSGG
T ss_pred CCCCCeEEEEECCchHH-------------------------HHHHHHHHHHhc----CCCeEEEEeCCCcC
Confidence 21248999999986321 123567777775 99999999988765
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.3e-14 Score=143.04 Aligned_cols=139 Identities=21% Similarity=0.257 Sum_probs=111.0
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
+.++.+.++.+|||+|||+|+.++.++...++.+.|+++|+++..++.+++|+...|+.++.+.+.|+..++... ..|
T Consensus 196 ~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~--~~~ 273 (354)
T 3tma_A 196 LRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF--PEV 273 (354)
T ss_dssp HHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC--CCC
T ss_pred HHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc--CCC
Confidence 344567889999999999999999999887445789999999999999999999999989999999999886433 569
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHh
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~ 330 (496)
|+|++||||.- .......+..++..++..+.+.| +|||+++++|| |+..+..+++
T Consensus 274 D~Ii~npPyg~--------------r~~~~~~~~~~~~~~~~~~~~~L----kpgG~l~i~t~------~~~~~~~~~~- 328 (354)
T 3tma_A 274 DRILANPPHGL--------------RLGRKEGLFHLYWDFLRGALALL----PPGGRVALLTL------RPALLKRALP- 328 (354)
T ss_dssp SEEEECCCSCC------------------CHHHHHHHHHHHHHHHHTS----CTTCEEEEEES------CHHHHHHHCC-
T ss_pred CEEEECCCCcC--------------ccCCcccHHHHHHHHHHHHHHhc----CCCcEEEEEeC------CHHHHHHHhh-
Confidence 99999999832 11112345667788888888876 99999999998 4666777665
Q ss_pred CCcEEe
Q 010971 331 RDVKLV 336 (496)
Q Consensus 331 ~~~~lv 336 (496)
.+++..
T Consensus 329 ~g~~~~ 334 (354)
T 3tma_A 329 PGFALR 334 (354)
T ss_dssp TTEEEE
T ss_pred cCcEEE
Confidence 555543
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-15 Score=157.27 Aligned_cols=166 Identities=13% Similarity=0.114 Sum_probs=121.8
Q ss_pred CCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-
Q 010971 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT- 229 (496)
Q Consensus 151 ~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~- 229 (496)
....+++|+|..|.....+...++ .+|.+|||+|||+|+.++++|.. +...|+++|+|+..++.+++|++.+|+.
T Consensus 187 ~~~~~~t~ff~~~~~~~~~~~~~~--~~~~~VLDl~cGtG~~sl~la~~--ga~~V~~vD~s~~al~~A~~N~~~n~~~~ 262 (385)
T 2b78_A 187 LNDGLMTGIFLDQRQVRNELINGS--AAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLDM 262 (385)
T ss_dssp SSSSSCCSSCGGGHHHHHHHHHTT--TBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCCC
T ss_pred ccccccCCcCCcHHHHHHHHHHHh--cCCCeEEEEeeccCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCc
Confidence 345667788866766655555544 57899999999999999998874 3358999999999999999999999997
Q ss_pred -eEEEEecCCCCCcccc--CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Q 010971 230 -NTIVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (496)
Q Consensus 230 -nv~v~~~D~~~~~~~~--~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG 306 (496)
++.++++|+..+.... ....||+|++|||+.+.+- ..+......+.+++..+..+| +|||
T Consensus 263 ~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~-------------~~~~~~~~~~~~ll~~~~~~L----~pgG 325 (385)
T 2b78_A 263 ANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNK-------------KEVFSVSKDYHKLIRQGLEIL----SENG 325 (385)
T ss_dssp TTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC------------------CCCCHHHHHHHHHHHHHHTE----EEEE
T ss_pred cceEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCCh-------------hhHHHHHHHHHHHHHHHHHhc----CCCc
Confidence 8999999987642211 1258999999999975320 011123345567888888887 9999
Q ss_pred EEEEEeCCCCC--cCCHHHHHHHHHhCCcEEee
Q 010971 307 YIVYSTCSIMV--TENEAVIDYALKKRDVKLVP 337 (496)
Q Consensus 307 ~LVYSTCSi~~--eENE~vV~~~L~~~~~~lv~ 337 (496)
+|++++|+-.. ++...++..++...+..++.
T Consensus 326 ~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~ 358 (385)
T 2b78_A 326 LIIASTNAANMTVSQFKKQIEKGFGKQKHTYLD 358 (385)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEeCCCcCCHHHHHHHHHHHHHHcCCcEEE
Confidence 99999999765 33445666666666655443
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-15 Score=142.19 Aligned_cols=121 Identities=12% Similarity=0.135 Sum_probs=94.9
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCcccc
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVL 245 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~ 245 (496)
..+...++...++.+|||+|||+|..+.+++..+++.+.|+++|+++.++..+++++.+.|+.+ +.++.+|+......+
T Consensus 47 ~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 126 (223)
T 3duw_A 47 GKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQI 126 (223)
T ss_dssp HHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHH
Confidence 3344444455678999999999999999999988756899999999999999999999999976 999999986542211
Q ss_pred C---CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 246 G---LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 246 ~---~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
. ...||.|++|+++. ....++..+.++| +|||+|++.++.+.
T Consensus 127 ~~~~~~~fD~v~~d~~~~-------------------------~~~~~l~~~~~~L----~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 127 ENEKYEPFDFIFIDADKQ-------------------------NNPAYFEWALKLS----RPGTVIIGDNVVRE 171 (223)
T ss_dssp HHTTCCCCSEEEECSCGG-------------------------GHHHHHHHHHHTC----CTTCEEEEESCSGG
T ss_pred HhcCCCCcCEEEEcCCcH-------------------------HHHHHHHHHHHhc----CCCcEEEEeCCCcC
Confidence 1 15699999998743 1134577777775 99999998877654
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=9e-16 Score=160.42 Aligned_cols=196 Identities=14% Similarity=0.100 Sum_probs=125.8
Q ss_pred ccccE-EEeCCcchhHHHh---cCC--CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 010971 156 MAGFY-MLQSASSFLPVMA---LAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT 229 (496)
Q Consensus 156 ~~G~~-~iQd~sS~l~v~~---L~~--~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~ 229 (496)
..|+| ..|.....+.+.+ +.. ++|.+|||+|||+|++++.+|..+++.+.|+++|+++.+++.+++|++.+|+.
T Consensus 24 ~~~Ffn~~~~~nR~l~~~~~~~~~~~~~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~ 103 (392)
T 3axs_A 24 MPVFYNPRMRVNRDLAVLGLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIP 103 (392)
T ss_dssp CCSSCCGGGHHHHHHHHHHHHHHHHHHCSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred CCEEEcCCcHHHHHHHHHHHHHHhhccCCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence 44555 3454444443222 222 57899999999999999999998765579999999999999999999999998
Q ss_pred e--EEEEecCCCCCcc-ccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Q 010971 230 N--TIVCNYDGNELPK-VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (496)
Q Consensus 230 n--v~v~~~D~~~~~~-~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG 306 (496)
+ +.+++.|+..+.. .. ...||+|++||+|+. ..+|..|+++| ++||
T Consensus 104 ~~~v~v~~~Da~~~l~~~~-~~~fD~V~lDP~g~~--------------------------~~~l~~a~~~L----k~gG 152 (392)
T 3axs_A 104 EDRYEIHGMEANFFLRKEW-GFGFDYVDLDPFGTP--------------------------VPFIESVALSM----KRGG 152 (392)
T ss_dssp GGGEEEECSCHHHHHHSCC-SSCEEEEEECCSSCC--------------------------HHHHHHHHHHE----EEEE
T ss_pred CceEEEEeCCHHHHHHHhh-CCCCcEEEECCCcCH--------------------------HHHHHHHHHHh----CCCC
Confidence 7 9999999876643 22 257999999997541 23678888886 9999
Q ss_pred EEEEEeCCCCCcCCHHHHHHHHHhCCcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEecC
Q 010971 307 YIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384 (496)
Q Consensus 307 ~LVYSTCSi~~eENE~vV~~~L~~~~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~~ 384 (496)
++|+||+-...-....+...+++++.....+..... .+...+-..-........+.+.|...-..+||+-+|.|..
T Consensus 153 -ll~~t~t~~~~l~g~~~~~~~rkYg~~p~r~~~~~e-~~~r~~L~~~~~~a~~~~~~i~P~l~~~~~~y~Rv~vrv~ 228 (392)
T 3axs_A 153 -ILSLTATDTAPLSGTYPKTCMRRYMARPLRNEFKHE-VGIRILIKKVIELAAQYDIAMIPIFAYSHLHYFKLFFVKE 228 (392)
T ss_dssp -EEEEEECCHHHHTTSSHHHHHHHHSSBCCCSTTHHH-HHHHHHHHHHHHHHHTTTEEEEEEEEEEETTEEEEEEEEE
T ss_pred -EEEEEecchhhhccccHHHHHHHhCCcccccccccc-hhHHHHHHHHHHhcccCCCeEEeeEEEEeCcEEEEEEEEe
Confidence 789999765432222334455555544322211000 0000000000000001235667766666788888877653
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-15 Score=153.23 Aligned_cols=157 Identities=14% Similarity=0.056 Sum_probs=114.1
Q ss_pred CcccccccEEEeCCcchhHHHhcC-CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe
Q 010971 152 TPEYMAGFYMLQSASSFLPVMALA-PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (496)
Q Consensus 152 ~~~~~~G~~~iQd~sS~l~v~~L~-~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n 230 (496)
+..+..|+|..|.....+....+. ..++.+|||+|||+|+.+++++.. + ..|+++|+|+..++.+++|+..+|+.+
T Consensus 126 ~~~~~tg~f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~--g-a~V~~VD~s~~al~~a~~n~~~~gl~~ 202 (332)
T 2igt_A 126 TAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA--G-AEVTHVDASKKAIGWAKENQVLAGLEQ 202 (332)
T ss_dssp CSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT--T-CEEEEECSCHHHHHHHHHHHHHHTCTT
T ss_pred CccccceechHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHc--C-CEEEEEECCHHHHHHHHHHHHHcCCCc
Confidence 455667888888776655555553 456889999999999999998874 3 399999999999999999999999975
Q ss_pred --EEEEecCCCCCcccc--CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Q 010971 231 --TIVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (496)
Q Consensus 231 --v~v~~~D~~~~~~~~--~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG 306 (496)
+.+++.|+..+.... ....||+|++||||.+.+-.. ++ + .....+..+|..+.++| +|||
T Consensus 203 ~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~---~~-~--------~~~~~~~~ll~~~~~~L----kpgG 266 (332)
T 2igt_A 203 APIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHG---EV-W--------QLFDHLPLMLDICREIL----SPKA 266 (332)
T ss_dssp SCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTC---CE-E--------EHHHHHHHHHHHHHHTB----CTTC
T ss_pred cceEEEECcHHHHHHHHHhcCCCceEEEECCccccCCchH---HH-H--------HHHHHHHHHHHHHHHhc----CcCc
Confidence 899999987654221 136899999999997765110 00 1 12234567888888886 9999
Q ss_pred E-EEEEeCCCCCcCCHHHHHHHHH
Q 010971 307 Y-IVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 307 ~-LVYSTCSi~~eENE~vV~~~L~ 329 (496)
+ ++.++|+... +......++.
T Consensus 267 ~lli~~~~~~~~--~~~~~~~~l~ 288 (332)
T 2igt_A 267 LGLVLTAYSIRA--SFYSMHELMR 288 (332)
T ss_dssp CEEEEEECCTTS--CHHHHHHHHH
T ss_pred EEEEEECCCCCC--CHHHHHHHHH
Confidence 9 5566677543 3444444443
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-14 Score=142.08 Aligned_cols=127 Identities=25% Similarity=0.278 Sum_probs=104.3
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
+++|.+|||+|||+|+.++++|.... ..|+|+|+|+..++.+++|++.+|+.+ +.++++|+..++. ...||+|+
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~--~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~---~~~fD~Vi 197 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---ENIADRIL 197 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---CSCEEEEE
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc---cCCccEEE
Confidence 46799999999999999999998743 279999999999999999999999987 8899999988764 37899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC---CCcCCHHHHHHHHHhC
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI---MVTENEAVIDYALKKR 331 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi---~~eENE~vV~~~L~~~ 331 (496)
+|+|++. ..++..+.++| +|||+|++++|+- ...+..+.+..++...
T Consensus 198 ~~~p~~~--------------------------~~~l~~~~~~L----kpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 247 (278)
T 2frn_A 198 MGYVVRT--------------------------HEFIPKALSIA----KDGAIIHYHNTVPEKLMPREPFETFKRITKEY 247 (278)
T ss_dssp ECCCSSG--------------------------GGGHHHHHHHE----EEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHT
T ss_pred ECCchhH--------------------------HHHHHHHHHHC----CCCeEEEEEEeeccccccccHHHHHHHHHHHc
Confidence 9999542 23567777876 9999999999983 3455666777777777
Q ss_pred CcEEee
Q 010971 332 DVKLVP 337 (496)
Q Consensus 332 ~~~lv~ 337 (496)
++.+..
T Consensus 248 G~~~~~ 253 (278)
T 2frn_A 248 GYDVEK 253 (278)
T ss_dssp TCEEEE
T ss_pred CCeeEE
Confidence 765543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-14 Score=139.68 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=102.9
Q ss_pred ccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEec
Q 010971 158 GFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNY 236 (496)
Q Consensus 158 G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~ 236 (496)
|..++|...+.+...++.+.++.+|||+|||+|..+.+++..++ .+.|+++|+++.+++.+++++.+.|+. ++.+...
T Consensus 34 ~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 112 (233)
T 2gpy_A 34 QVPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFG 112 (233)
T ss_dssp TCCCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred CCCCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 44456666666767777777899999999999999999999885 479999999999999999999999996 5999999
Q ss_pred CCCCC-ccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 237 DGNEL-PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 237 D~~~~-~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
|+... +.....+.||+|++|+||+ .+..+|..+.++| +|||+|+++++.+
T Consensus 113 d~~~~~~~~~~~~~fD~I~~~~~~~-------------------------~~~~~l~~~~~~L----~pgG~lv~~~~~~ 163 (233)
T 2gpy_A 113 DALQLGEKLELYPLFDVLFIDAAKG-------------------------QYRRFFDMYSPMV----RPGGLILSDNVLF 163 (233)
T ss_dssp CGGGSHHHHTTSCCEEEEEEEGGGS-------------------------CHHHHHHHHGGGE----EEEEEEEEETTTC
T ss_pred CHHHHHHhcccCCCccEEEECCCHH-------------------------HHHHHHHHHHHHc----CCCeEEEEEcCCc
Confidence 98775 3221136899999998864 1245677777776 9999999997654
Q ss_pred C
Q 010971 316 M 316 (496)
Q Consensus 316 ~ 316 (496)
.
T Consensus 164 ~ 164 (233)
T 2gpy_A 164 R 164 (233)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=134.40 Aligned_cols=116 Identities=19% Similarity=0.251 Sum_probs=92.4
Q ss_pred chhHHHh------cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCC
Q 010971 167 SFLPVMA------LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240 (496)
Q Consensus 167 S~l~v~~------L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~ 240 (496)
|.|++.+ |.++||++|||+|||+|..+.++|...+++|.|+|+|+++.+++.+.+++.+. .|+..+..|...
T Consensus 60 sklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--~ni~~V~~d~~~ 137 (233)
T 4df3_A 60 SKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--RNIFPILGDARF 137 (233)
T ss_dssp CHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--TTEEEEESCTTC
T ss_pred hHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--cCeeEEEEeccC
Confidence 5666555 35899999999999999999999999999999999999999999999888765 478888888876
Q ss_pred Cccc-cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 241 LPKV-LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 241 ~~~~-~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
.... .....||.|++|.+... .....+.++.++| ||||+++.+.
T Consensus 138 p~~~~~~~~~vDvVf~d~~~~~------------------------~~~~~l~~~~r~L----KpGG~lvI~i 182 (233)
T 4df3_A 138 PEKYRHLVEGVDGLYADVAQPE------------------------QAAIVVRNARFFL----RDGGYMLMAI 182 (233)
T ss_dssp GGGGTTTCCCEEEEEECCCCTT------------------------HHHHHHHHHHHHE----EEEEEEEEEE
T ss_pred ccccccccceEEEEEEeccCCh------------------------hHHHHHHHHHHhc----cCCCEEEEEE
Confidence 4321 22368999999987431 1134577787876 9999999864
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.9e-14 Score=139.17 Aligned_cols=205 Identities=14% Similarity=0.141 Sum_probs=123.6
Q ss_pred HHHHcCCCCCeEEEEcCCCCCHHHHH-HHHHHcCCccCCCCcCCcccEEEecCCCCCCCCcccccccEEEeCCcchhHHH
Q 010971 94 LIESFEKPRPICLRTNTLKTRRRDLA-DVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVM 172 (496)
Q Consensus 94 ~lea~~~~~P~~iRvNtlk~~~~~l~-~~L~~~Gv~~~p~~~~~~~gl~v~~~~~~i~~~~~~~~G~~~iQd~sS~l~v~ 172 (496)
++.+++...|++.|+|+.+.+.+.+. +.|...++.. .+ ......+..+. +.+......+..+...+++..+.+.+.
T Consensus 28 i~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~g~~~g~-~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (275)
T 1yb2_A 28 ILVSEDEYGKFDESTNSILVKGKMHHLGISRVIEPGD-EL-IVSGKSFIVSD-FSPMYFGRVIRRNTQIISEIDASYIIM 104 (275)
T ss_dssp EEECSSCCEEEETTTTEEEC-CCEEECC-CCCCCTTC-EE-EETTEEEEEEC-CCGGGHHHHC-----------------
T ss_pred EEEecCCCCceeccccceeccCCccchhheeCCCCCc-EE-EECCeEEEEeC-CCHHHHHhhccccccccChhhHHHHHH
Confidence 34567788899999997665432211 1111111100 00 00001111211 111122233445566677766777778
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEecCCCCCccccCCCCcC
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-GVTNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~-g~~nv~v~~~D~~~~~~~~~~~~fD 251 (496)
.+.+.++.+|||+|||+|..+.+++..+.+.+.|+++|+++.+++.+++++.++ |..++.+...|+... +..+.||
T Consensus 105 ~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~---~~~~~fD 181 (275)
T 1yb2_A 105 RCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF---ISDQMYD 181 (275)
T ss_dssp -CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC---CCSCCEE
T ss_pred HcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhcc---CcCCCcc
Confidence 888999999999999999999999998655689999999999999999999999 988899999998763 2336899
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhC
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~ 331 (496)
+|++|+| +| ..+|..+.+.| +|||+|++++|+.. ....+...+...
T Consensus 182 ~Vi~~~~---------~~------------------~~~l~~~~~~L----kpgG~l~i~~~~~~---~~~~~~~~l~~~ 227 (275)
T 1yb2_A 182 AVIADIP---------DP------------------WNHVQKIASMM----KPGSVATFYLPNFD---QSEKTVLSLSAS 227 (275)
T ss_dssp EEEECCS---------CG------------------GGSHHHHHHTE----EEEEEEEEEESSHH---HHHHHHHHSGGG
T ss_pred EEEEcCc---------CH------------------HHHHHHHHHHc----CCCCEEEEEeCCHH---HHHHHHHHHHHC
Confidence 9999887 11 13577777776 99999999998762 222333345555
Q ss_pred CcEEeec
Q 010971 332 DVKLVPC 338 (496)
Q Consensus 332 ~~~lv~~ 338 (496)
++..+.+
T Consensus 228 Gf~~~~~ 234 (275)
T 1yb2_A 228 GMHHLET 234 (275)
T ss_dssp TEEEEEE
T ss_pred CCeEEEE
Confidence 6665544
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.8e-14 Score=143.75 Aligned_cols=102 Identities=17% Similarity=0.263 Sum_probs=84.0
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCC-----------
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL----------- 247 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~----------- 247 (496)
|.+|||+|||+|+.|+.+|.. .+.|+|+|+++..++.+++|++.+|+.|+.++.+|+..+...+..
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~ 290 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGID 290 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSC
T ss_pred CCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccc
Confidence 688999999999999988863 368999999999999999999999999999999998765322211
Q ss_pred ---CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 248 ---NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 248 ---~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
..||+|++|||+.|. ...+++.+ ++||+|||++|+.
T Consensus 291 ~~~~~fD~Vv~dPPr~g~----------------------------~~~~~~~l----~~~g~ivyvsc~p 329 (369)
T 3bt7_A 291 LKSYQCETIFVDPPRSGL----------------------------DSETEKMV----QAYPRILYISCNP 329 (369)
T ss_dssp GGGCCEEEEEECCCTTCC----------------------------CHHHHHHH----TTSSEEEEEESCH
T ss_pred cccCCCCEEEECcCcccc----------------------------HHHHHHHH----hCCCEEEEEECCH
Confidence 279999999998753 23345555 7899999999974
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-13 Score=126.24 Aligned_cols=140 Identities=19% Similarity=0.192 Sum_probs=109.4
Q ss_pred ccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecC
Q 010971 158 GFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD 237 (496)
Q Consensus 158 G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D 237 (496)
|.+ .++....+....+.+.++.+|||+|||+|..+..++...+ .+.|+++|+++.+++.+++|+.++|+.++.++..|
T Consensus 21 g~~-~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d 98 (204)
T 3e05_A 21 KLI-TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAF 98 (204)
T ss_dssp TTS-CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECC
T ss_pred CcC-ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 444 3333334455667888999999999999999999998853 57999999999999999999999999889999999
Q ss_pred CCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 238 GNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 238 ~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
+....... ..||+|+++.+.. ....+|..+.++| +|||+|++++++.
T Consensus 99 ~~~~~~~~--~~~D~i~~~~~~~-------------------------~~~~~l~~~~~~L----kpgG~l~~~~~~~-- 145 (204)
T 3e05_A 99 APEGLDDL--PDPDRVFIGGSGG-------------------------MLEEIIDAVDRRL----KSEGVIVLNAVTL-- 145 (204)
T ss_dssp TTTTCTTS--CCCSEEEESCCTT-------------------------CHHHHHHHHHHHC----CTTCEEEEEECBH--
T ss_pred hhhhhhcC--CCCCEEEECCCCc-------------------------CHHHHHHHHHHhc----CCCeEEEEEeccc--
Confidence 86554322 6799999987631 1135677888876 9999999988775
Q ss_pred cCCHHHHHHHHHhCCc
Q 010971 318 TENEAVIDYALKKRDV 333 (496)
Q Consensus 318 eENE~vV~~~L~~~~~ 333 (496)
++...+..++.+.++
T Consensus 146 -~~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 146 -DTLTKAVEFLEDHGY 160 (204)
T ss_dssp -HHHHHHHHHHHHTTC
T ss_pred -ccHHHHHHHHHHCCC
Confidence 455666667777775
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-13 Score=128.72 Aligned_cols=131 Identities=19% Similarity=0.242 Sum_probs=105.7
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~ 247 (496)
+....+.+.++.+|||+|||+|..+..++.. .+.|+++|+++.+++.+++|++++|+. ++.++.+|+.......
T Consensus 46 ~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~-- 120 (204)
T 3njr_A 46 LTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADL-- 120 (204)
T ss_dssp HHHHHHCCCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTS--
T ss_pred HHHHhcCCCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccC--
Confidence 4455678889999999999999999999887 479999999999999999999999998 8999999998743222
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHH
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~ 327 (496)
..||.|++++.. . +. ++..+.+.| +|||+|++++|+. ++...+..+
T Consensus 121 ~~~D~v~~~~~~----------------~----------~~-~l~~~~~~L----kpgG~lv~~~~~~---~~~~~~~~~ 166 (204)
T 3njr_A 121 PLPEAVFIGGGG----------------S----------QA-LYDRLWEWL----APGTRIVANAVTL---ESETLLTQL 166 (204)
T ss_dssp CCCSEEEECSCC----------------C----------HH-HHHHHHHHS----CTTCEEEEEECSH---HHHHHHHHH
T ss_pred CCCCEEEECCcc----------------c----------HH-HHHHHHHhc----CCCcEEEEEecCc---ccHHHHHHH
Confidence 579999987621 0 12 577777776 9999999999875 566666677
Q ss_pred HHhCCcEEeec
Q 010971 328 LKKRDVKLVPC 338 (496)
Q Consensus 328 L~~~~~~lv~~ 338 (496)
++..++++..+
T Consensus 167 l~~~g~~i~~i 177 (204)
T 3njr_A 167 HARHGGQLLRI 177 (204)
T ss_dssp HHHHCSEEEEE
T ss_pred HHhCCCcEEEE
Confidence 77777776665
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-14 Score=145.07 Aligned_cols=222 Identities=15% Similarity=0.152 Sum_probs=133.2
Q ss_pred HHHHHHHHhC--CHHHHHHHHHHcCCCCCeEEEEcC---CCCCHHHHHHHHHH--cCCccCCCCcC-CcccEEEecCCCC
Q 010971 77 FLIGALVEMF--PPVELMELIESFEKPRPICLRTNT---LKTRRRDLADVLIN--RGVNLDPLSKW-SKVGLVVYDSQVP 148 (496)
Q Consensus 77 wl~~~l~~~~--~~~e~~~~lea~~~~~P~~iRvNt---lk~~~~~l~~~L~~--~Gv~~~p~~~~-~~~gl~v~~~~~~ 148 (496)
|....|...+ +..++..++.......+.++++|. ...+.+.+.+.+.. .|..+..+..+ .-.|+.+.
T Consensus 22 ~~~~~l~~~~~~~~~~a~~ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~p~~yi~g~~~f~~~~~~----- 96 (284)
T 1nv8_A 22 DCSGKLEGVTETSVLEVLLIVSRVLGIRKEDLFLKDLGVSPTEEKRILELVEKRASGYPLHYILGEKEFMGLSFL----- 96 (284)
T ss_dssp HHHHHTTTTCSCHHHHHHHHHHHHHTCCGGGGCCSSCCCCHHHHHHHHHHHHHHHTTCCHHHHHTEEEETTEEEE-----
T ss_pred HHHHHHHhccCChHHHHHHHHHHHcCCCHHHHHhccccccccCHHHHHHHHHHHHCCCCCeEEeeeeEECCeEEE-----
Confidence 4444444333 445677777777666777777765 22222445444443 34322211000 00112111
Q ss_pred CCCCcccccccEEEeCCcchhHHHhc---CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 010971 149 IGATPEYMAGFYMLQSASSFLPVMAL---APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (496)
Q Consensus 149 i~~~~~~~~G~~~iQd~sS~l~v~~L---~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r 225 (496)
...|.|+.......++-.++ ...++.+|||+|||+|..++.++.. +...|+|+|+|+..++.+++|+.+
T Consensus 97 ------v~~~~lipr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~ 168 (284)
T 1nv8_A 97 ------VEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAER 168 (284)
T ss_dssp ------CCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHH
T ss_pred ------eCCCceecChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHH
Confidence 01233333333333333332 2346789999999999999999988 457999999999999999999999
Q ss_pred cCCCe-EEEEecCCCCCccccCCCCc---CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHH-Hhhhh
Q 010971 226 MGVTN-TIVCNYDGNELPKVLGLNTV---DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAI-DMVDA 300 (496)
Q Consensus 226 ~g~~n-v~v~~~D~~~~~~~~~~~~f---D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~-~~l~~ 300 (496)
+|+.+ +.+++.|+..... +.| |+|++||||.+.+. .-.+++++. ....+. .......++..++ +.+
T Consensus 169 ~~l~~~v~~~~~D~~~~~~----~~f~~~D~IvsnPPyi~~~~-~l~~~v~~e-p~~al~-~~~dgl~~~~~i~~~~l-- 239 (284)
T 1nv8_A 169 HGVSDRFFVRKGEFLEPFK----EKFASIEMILSNPPYVKSSA-HLPKDVLFE-PPEALF-GGEDGLDFYREFFGRYD-- 239 (284)
T ss_dssp TTCTTSEEEEESSTTGGGG----GGTTTCCEEEECCCCBCGGG-SCTTSCCCS-CHHHHB-CTTTSCHHHHHHHHHCC--
T ss_pred cCCCCceEEEECcchhhcc----cccCCCCEEEEcCCCCCccc-ccChhhccC-cHHHhc-CCCcHHHHHHHHHHhcC--
Confidence 99986 9999999876321 468 99999999998876 444555411 111000 0000113566666 665
Q ss_pred cCCCCcEEEEEeCCCCCcCCHHHHH
Q 010971 301 NSKSGGYIVYSTCSIMVTENEAVID 325 (496)
Q Consensus 301 ~lkpGG~LVYSTCSi~~eENE~vV~ 325 (496)
+|||.|++. +...+.++|.+
T Consensus 240 --~pgG~l~~e---~~~~q~~~v~~ 259 (284)
T 1nv8_A 240 --TSGKIVLME---IGEDQVEELKK 259 (284)
T ss_dssp --CTTCEEEEE---CCTTCHHHHTT
T ss_pred --CCCCEEEEE---ECchHHHHHHH
Confidence 999999863 34445555443
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=136.93 Aligned_cols=125 Identities=26% Similarity=0.313 Sum_probs=100.1
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
.++|++|||||||+|+.|+++|.. +...|+|+|+|+..++.+++|++.+|+.+ +.++++|++.++. .+.||+|+
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~--g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~---~~~~D~Vi 197 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---ENIADRIL 197 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---CSCEEEEE
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc---ccCCCEEE
Confidence 478999999999999999998875 34689999999999999999999999976 8999999998864 36899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE-eC--CCCCcCCHHHHHHHHHhC
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS-TC--SIMVTENEAVIDYALKKR 331 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS-TC--Si~~eENE~vV~~~L~~~ 331 (496)
+|+|++.. +.|..|+.++ ++||.|.|. .+ .....+..+.+..+....
T Consensus 198 ~~~p~~~~--------------------------~~l~~a~~~l----k~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~ 247 (278)
T 3k6r_A 198 MGYVVRTH--------------------------EFIPKALSIA----KDGAIIHYHNTVPEKLMPREPFETFKRITKEY 247 (278)
T ss_dssp ECCCSSGG--------------------------GGHHHHHHHE----EEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHT
T ss_pred ECCCCcHH--------------------------HHHHHHHHHc----CCCCEEEEEeeecccccchhHHHHHHHHHHHc
Confidence 99997542 2467788876 999998653 32 233455567777777776
Q ss_pred CcEE
Q 010971 332 DVKL 335 (496)
Q Consensus 332 ~~~l 335 (496)
++++
T Consensus 248 g~~v 251 (278)
T 3k6r_A 248 GYDV 251 (278)
T ss_dssp TCEE
T ss_pred CCcE
Confidence 6544
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=126.14 Aligned_cols=123 Identities=15% Similarity=0.205 Sum_probs=89.8
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
.+.+|.+|||+|||+|..|.+++.. .+.|+|+|+|+.+++.+++++...|+.++.+++.|...++... .+.||.|+
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~-~~~fD~v~ 94 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYV-REPIRAAI 94 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTC-CSCEEEEE
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhc-cCCcCEEE
Confidence 3568999999999999999999876 4799999999999999999999999988999887776654333 47899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCc
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT 318 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~e 318 (496)
+++++-.. ....+......+..+|..+.+.| +|||+|+.+.++-++.
T Consensus 95 ~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~~~~L----kpgG~l~i~~~~~~~~ 141 (185)
T 3mti_A 95 FNLGYLPS-------------ADKSVITKPHTTLEAIEKILDRL----EVGGRLAIMIYYGHDG 141 (185)
T ss_dssp EEEC------------------------CHHHHHHHHHHHHHHE----EEEEEEEEEEC-----
T ss_pred EeCCCCCC-------------cchhcccChhhHHHHHHHHHHhc----CCCcEEEEEEeCCCCC
Confidence 98643111 11122223344566788888876 9999999888875543
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=130.59 Aligned_cols=150 Identities=13% Similarity=0.068 Sum_probs=102.7
Q ss_pred CCCCCCeEeeccCC-CchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEE
Q 010971 175 APQEKERVIDMAAA-PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 175 ~~~~g~~VLDmcAg-pGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
.+.+|.+|||+||| +|..+..++... .+.|+++|+++..++.+++|+..+|+ ++.++..|+..+... ..+.||+|
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~-~~~~fD~I 127 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKGV-VEGTFDVI 127 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTTT-CCSCEEEE
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhhc-ccCceeEE
Confidence 35689999999999 999999999886 47999999999999999999999999 899999997654332 23789999
Q ss_pred EECCCCCCCCcccCC-chhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCC
Q 010971 254 LLDAPCSGTGVISKD-ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332 (496)
Q Consensus 254 LlDaPCSg~G~i~r~-p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~ 332 (496)
++|||+...+..... |...+......+ .....+|..+.++| +|||+|++.+++- .+....+...+.+.+
T Consensus 128 ~~npp~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~L----kpgG~l~~~~~~~--~~~~~~~~~~l~~~g 197 (230)
T 3evz_A 128 FSAPPYYDKPLGRVLTEREAIGGGKYGE----EFSVKLLEEAFDHL----NPGGKVALYLPDK--EKLLNVIKERGIKLG 197 (230)
T ss_dssp EECCCCC---------------CCSSSC----HHHHHHHHHHGGGE----EEEEEEEEEEESC--HHHHHHHHHHHHHTT
T ss_pred EECCCCcCCccccccChhhhhccCccch----HHHHHHHHHHHHHh----CCCeEEEEEeccc--HhHHHHHHHHHHHcC
Confidence 999998766542211 111110000011 11255777777776 9999999876542 133445556667777
Q ss_pred cEEeec
Q 010971 333 VKLVPC 338 (496)
Q Consensus 333 ~~lv~~ 338 (496)
+.+..+
T Consensus 198 ~~~~~~ 203 (230)
T 3evz_A 198 YSVKDI 203 (230)
T ss_dssp CEEEEE
T ss_pred CceEEE
Confidence 765544
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-13 Score=134.37 Aligned_cols=121 Identities=17% Similarity=0.126 Sum_probs=96.0
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCcccc
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVL 245 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~ 245 (496)
..+...++...++.+|||+|||+|..+++++..+++.+.|+++|+++.+++.+++++.+.|+.+ +.+..+|+..+...+
T Consensus 59 ~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l 138 (237)
T 3c3y_A 59 GQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNL 138 (237)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHH
Confidence 3344444444567899999999999999999998767899999999999999999999999974 999999987642212
Q ss_pred -----CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 246 -----GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 246 -----~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
..+.||.|++|++|. .+..++..+.++| +|||+||+.+|.+.
T Consensus 139 ~~~~~~~~~fD~I~~d~~~~-------------------------~~~~~l~~~~~~L----~pGG~lv~d~~~~~ 185 (237)
T 3c3y_A 139 LQGQESEGSYDFGFVDADKP-------------------------NYIKYHERLMKLV----KVGGIVAYDNTLWG 185 (237)
T ss_dssp HHSTTCTTCEEEEEECSCGG-------------------------GHHHHHHHHHHHE----EEEEEEEEECTTGG
T ss_pred HhccCCCCCcCEEEECCchH-------------------------HHHHHHHHHHHhc----CCCeEEEEecCCcC
Confidence 136899999998642 1244677777776 99999999988653
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-13 Score=124.95 Aligned_cols=126 Identities=17% Similarity=0.267 Sum_probs=97.8
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcCEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
.+++|.+|||+|||+|..+..++..+++.+.|+++|+++.+++.+++++..+|+ .++.+++.|+..++... .+.||+|
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~v 97 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI-DCPVKAV 97 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC-CSCEEEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc-cCCceEE
Confidence 467899999999999999999999986667999999999999999999999998 67999999988776433 3789999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCc
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT 318 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~e 318 (496)
++|+|.-..+ +........ ....+|..+.++| +|||+|++++++-.+.
T Consensus 98 ~~~~~~~~~~------~~~~~~~~~-------~~~~~l~~~~~~L----k~gG~l~~~~~~~~~~ 145 (197)
T 3eey_A 98 MFNLGYLPSG------DHSISTRPE-------TTIQALSKAMELL----VTGGIITVVIYYGGDT 145 (197)
T ss_dssp EEEESBCTTS------CTTCBCCHH-------HHHHHHHHHHHHE----EEEEEEEEEECCBTTT
T ss_pred EEcCCcccCc------ccccccCcc-------cHHHHHHHHHHhC----cCCCEEEEEEccCCCC
Confidence 9998751111 000111111 2344788888886 9999999988665443
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.3e-13 Score=137.42 Aligned_cols=153 Identities=12% Similarity=0.123 Sum_probs=114.4
Q ss_pred cccccccEEEeCCcchhHHHhc-CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeE
Q 010971 153 PEYMAGFYMLQSASSFLPVMAL-APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231 (496)
Q Consensus 153 ~~~~~G~~~iQd~sS~l~v~~L-~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv 231 (496)
..|..++...|+..+.+..... ...+|.+|||+| |+|..+..++.. ...+.|+++|+++.+++.+++|+.++|+.++
T Consensus 146 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~-~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v 223 (373)
T 2qm3_A 146 HEFDQAYVTPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLS-GLPKRIAVLDIDERLTKFIEKAANEIGYEDI 223 (373)
T ss_dssp GGGTCCCBCHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHH-TCCSEEEEECSCHHHHHHHHHHHHHHTCCCE
T ss_pred hhcCCeecCHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCE
Confidence 3455566666665555543322 345789999999 999999988775 3347999999999999999999999999889
Q ss_pred EEEecCCCC-CccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc-EEE
Q 010971 232 IVCNYDGNE-LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG-YIV 309 (496)
Q Consensus 232 ~v~~~D~~~-~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG-~LV 309 (496)
.++.+|+.. ++... .+.||+|++|+||+.. . ...+|..+.+.| +||| .++
T Consensus 224 ~~~~~D~~~~l~~~~-~~~fD~Vi~~~p~~~~----------------~-------~~~~l~~~~~~L----kpgG~~~~ 275 (373)
T 2qm3_A 224 EIFTFDLRKPLPDYA-LHKFDTFITDPPETLE----------------A-------IRAFVGRGIATL----KGPRCAGY 275 (373)
T ss_dssp EEECCCTTSCCCTTT-SSCBSEEEECCCSSHH----------------H-------HHHHHHHHHHTB----CSTTCEEE
T ss_pred EEEEChhhhhchhhc-cCCccEEEECCCCchH----------------H-------HHHHHHHHHHHc----ccCCeEEE
Confidence 999999988 55322 2589999999997531 0 156788888886 9999 558
Q ss_pred EEeCCCCCcCCH---HHHHHHHH-hCCcEEee
Q 010971 310 YSTCSIMVTENE---AVIDYALK-KRDVKLVP 337 (496)
Q Consensus 310 YSTCSi~~eENE---~vV~~~L~-~~~~~lv~ 337 (496)
|++|+ ..++. ..+..++. ..++.+..
T Consensus 276 ~~~~~--~~~~~~~~~~~~~~l~~~~g~~~~~ 305 (373)
T 2qm3_A 276 FGITR--RESSLDKWREIQKLLLNEFNVVITD 305 (373)
T ss_dssp EEECT--TTCCHHHHHHHHHHHHHTSCCEEEE
T ss_pred EEEec--CcCCHHHHHHHHHHHHHhcCcchhh
Confidence 88887 34555 56677776 66765544
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-14 Score=139.01 Aligned_cols=127 Identities=11% Similarity=0.115 Sum_probs=99.0
Q ss_pred EEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCC
Q 010971 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDG 238 (496)
Q Consensus 160 ~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~ 238 (496)
+.++.....+...++...++.+|||+|||+|..|++||..++..+.|+++|+++..++.+++++.+.|+. ++.++.+|+
T Consensus 42 ~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda 121 (242)
T 3r3h_A 42 MQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPA 121 (242)
T ss_dssp TSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCH
T ss_pred CccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence 3344555555555555667889999999999999999999876789999999999999999999999996 699999998
Q ss_pred CCCcccc----CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 239 NELPKVL----GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 239 ~~~~~~~----~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
..+...+ ..+.||+|++|+++. ....+|..+.++| +|||+||+..+.
T Consensus 122 ~~~l~~~~~~~~~~~fD~V~~d~~~~-------------------------~~~~~l~~~~~~L----kpGG~lv~d~~~ 172 (242)
T 3r3h_A 122 LDTLHSLLNEGGEHQFDFIFIDADKT-------------------------NYLNYYELALKLV----TPKGLIAIDNIF 172 (242)
T ss_dssp HHHHHHHHHHHCSSCEEEEEEESCGG-------------------------GHHHHHHHHHHHE----EEEEEEEEECSS
T ss_pred HHHHHHHhhccCCCCEeEEEEcCChH-------------------------HhHHHHHHHHHhc----CCCeEEEEECCc
Confidence 7653221 026899999998621 0123577777776 999999987666
Q ss_pred C
Q 010971 315 I 315 (496)
Q Consensus 315 i 315 (496)
+
T Consensus 173 ~ 173 (242)
T 3r3h_A 173 W 173 (242)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-12 Score=128.31 Aligned_cols=137 Identities=17% Similarity=0.166 Sum_probs=96.7
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH---cCCC-eEEEEecCCCCCc
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR---MGVT-NTIVCNYDGNELP 242 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r---~g~~-nv~v~~~D~~~~~ 242 (496)
+.+.+..+.+.++.+|||+|||+|..++.+++..+ ...|+++|+++..++.+++|+.. +|+. ++.+++.|+..+.
T Consensus 25 ~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~ 103 (260)
T 2ozv_A 25 AMLLASLVADDRACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRA 103 (260)
T ss_dssp HHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCH
T ss_pred HHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHh
Confidence 56667777788899999999999999999999874 37999999999999999999999 8887 4999999998872
Q ss_pred c-----ccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 243 K-----VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 243 ~-----~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
. .+..+.||+|++|||+...+ -...|+....... .........+|..+.++| +|||+|++..
T Consensus 104 ~~~~~~~~~~~~fD~Vv~nPPy~~~~-~~~~~~~~~~~a~---~~~~~~~~~~l~~~~~~L----kpgG~l~~~~ 170 (260)
T 2ozv_A 104 KARVEAGLPDEHFHHVIMNPPYNDAG-DRRTPDALKAEAH---AMTEGLFEDWIRTASAIM----VSGGQLSLIS 170 (260)
T ss_dssp HHHHHTTCCTTCEEEEEECCCC-------------------------CCHHHHHHHHHHHE----EEEEEEEEEE
T ss_pred hhhhhhccCCCCcCEEEECCCCcCCC-CCCCcCHHHHHHh---hcCcCCHHHHHHHHHHHc----CCCCEEEEEE
Confidence 1 13347899999999998764 1222222111100 000111356788888886 9999998753
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.42 E-value=4e-14 Score=131.92 Aligned_cols=144 Identities=15% Similarity=0.087 Sum_probs=74.9
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc--cCCCCcCEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--LGLNTVDRVL 254 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~--~~~~~fD~VL 254 (496)
.++.+|||+|||+|..+.+++...+ .+.|+++|+++..++.++.|+..+|. ++.+++.|+...... ...+.||+|+
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~fD~i~ 106 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLIERAERGRPWHAIV 106 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC--------------------CCHHHHHHHHHHHHHTTCCBSEEE
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhhhhhhccCcccEEE
Confidence 6889999999999999999999864 46999999999999999999999988 888888887652111 0127899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHH-H---HHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLED-I---QKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~-i---~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~ 329 (496)
+|||+...+.+..-+.......+.. + .........++..+.++ |+|||++++.++.. .....+..++.
T Consensus 107 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----LkpgG~l~~~~~~~---~~~~~~~~~l~ 178 (215)
T 4dzr_A 107 SNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYV----LARGRAGVFLEVGH---NQADEVARLFA 178 (215)
T ss_dssp ECCCCCC------------------------CTTHHHHHHHTCCGGG----BCSSSEEEEEECTT---SCHHHHHHHTG
T ss_pred ECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHH----hcCCCeEEEEEECC---ccHHHHHHHHH
Confidence 9999987765543211110000000 0 00011124455555555 59999966655553 44555555565
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.40 E-value=4.8e-12 Score=124.69 Aligned_cols=133 Identities=20% Similarity=0.249 Sum_probs=103.7
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~ 247 (496)
..+..+++.+|.+|||+|||+|..+..++..+++.+.|+++|+++.+++.+++|+..+|+ .++.+...|+... +..
T Consensus 103 ~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~ 179 (277)
T 1o54_A 103 FIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG---FDE 179 (277)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC---CSC
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc---ccC
Confidence 345566788999999999999999999999876568999999999999999999999998 5799999998765 233
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHH
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~ 327 (496)
+.||+|++|+|+. ..+|..+.++| +|||.|++.+++.. .-+.+ ...
T Consensus 180 ~~~D~V~~~~~~~---------------------------~~~l~~~~~~L----~pgG~l~~~~~~~~--~~~~~-~~~ 225 (277)
T 1o54_A 180 KDVDALFLDVPDP---------------------------WNYIDKCWEAL----KGGGRFATVCPTTN--QVQET-LKK 225 (277)
T ss_dssp CSEEEEEECCSCG---------------------------GGTHHHHHHHE----EEEEEEEEEESSHH--HHHHH-HHH
T ss_pred CccCEEEECCcCH---------------------------HHHHHHHHHHc----CCCCEEEEEeCCHH--HHHHH-HHH
Confidence 6799999998842 13577777776 99999999887652 11233 344
Q ss_pred HHhCCcEEeec
Q 010971 328 LKKRDVKLVPC 338 (496)
Q Consensus 328 L~~~~~~lv~~ 338 (496)
|...++..+.+
T Consensus 226 l~~~gf~~~~~ 236 (277)
T 1o54_A 226 LQELPFIRIEV 236 (277)
T ss_dssp HHHSSEEEEEE
T ss_pred HHHCCCceeEE
Confidence 55567665554
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-12 Score=120.36 Aligned_cols=113 Identities=14% Similarity=0.103 Sum_probs=89.2
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.+|.+|||+|||+|..+..++.. +...|+++|+|+..++.+++|+..+|+.++.+++.|+..++..+..+.||+|++|
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~ 120 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLAD 120 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEEC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEEC
Confidence 57899999999999999987763 4468999999999999999999999998899999999876543334789999999
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHH--hhhhcCCCCcEEEEEeCCCC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAID--MVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~--~l~~~lkpGG~LVYSTCSi~ 316 (496)
+|.... . .....++..+.+ + |+|||+|++.+.+-.
T Consensus 121 ~p~~~~--------------~-------~~~~~~l~~~~~~~~----L~pgG~l~~~~~~~~ 157 (189)
T 3p9n_A 121 PPYNVD--------------S-------ADVDAILAALGTNGW----TREGTVAVVERATTC 157 (189)
T ss_dssp CCTTSC--------------H-------HHHHHHHHHHHHSSS----CCTTCEEEEEEETTS
T ss_pred CCCCcc--------------h-------hhHHHHHHHHHhcCc----cCCCeEEEEEecCCC
Confidence 994321 1 112344555555 5 499999999877643
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.8e-13 Score=131.95 Aligned_cols=109 Identities=25% Similarity=0.322 Sum_probs=89.8
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
+..+.+|++|||+|||+|..|+.+|...+ .+.|+|+|+++..++.+++|++.+|+.|+.++++|+..++ . ...||+
T Consensus 114 ~~~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~-~--~~~~D~ 189 (272)
T 3a27_A 114 AFISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVE-L--KDVADR 189 (272)
T ss_dssp HTSCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCC-C--TTCEEE
T ss_pred HHhcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcC-c--cCCceE
Confidence 34467899999999999999999998864 4799999999999999999999999999999999998773 2 368999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
|++|+|. + ..+++..+++.| +|||+|++ +|...
T Consensus 190 Vi~d~p~---~-----------------------~~~~l~~~~~~L----kpgG~l~~-s~~~~ 222 (272)
T 3a27_A 190 VIMGYVH---K-----------------------THKFLDKTFEFL----KDRGVIHY-HETVA 222 (272)
T ss_dssp EEECCCS---S-----------------------GGGGHHHHHHHE----EEEEEEEE-EEEEE
T ss_pred EEECCcc---c-----------------------HHHHHHHHHHHc----CCCCEEEE-EEcCc
Confidence 9999994 1 123577777776 99998774 55544
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=125.60 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=92.9
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEecCCCCCccccCCCCcC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT--NTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~--nv~v~~~D~~~~~~~~~~~~fD 251 (496)
..++++.+|||+|||+|..|+.|+..+++.+.|+++|+++.+++.+++++.+.|+. ++.++.+|+..+...+..+.||
T Consensus 52 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD 131 (221)
T 3dr5_A 52 TNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQ 131 (221)
T ss_dssp SCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEE
T ss_pred hCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcC
Confidence 44556679999999999999999998876789999999999999999999999997 6999999987654333347899
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.|++|++... ...++..+.++| +|||+||+.++.+
T Consensus 132 ~V~~d~~~~~-------------------------~~~~l~~~~~~L----kpGG~lv~dn~~~ 166 (221)
T 3dr5_A 132 LVFGQVSPMD-------------------------LKALVDAAWPLL----RRGGALVLADALL 166 (221)
T ss_dssp EEEECCCTTT-------------------------HHHHHHHHHHHE----EEEEEEEETTTTG
T ss_pred eEEEcCcHHH-------------------------HHHHHHHHHHHc----CCCcEEEEeCCCC
Confidence 9999986211 123577777776 9999999988776
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.37 E-value=7e-13 Score=124.76 Aligned_cols=123 Identities=18% Similarity=0.261 Sum_probs=90.4
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc------cC---
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV------LG--- 246 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~------~~--- 246 (496)
+++|.+|||+|||||++|.++++. .+.|+|+|+++. ..+.++.++.+|+...+.. +.
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~-----------~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 88 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEM-----------EEIAGVRFIRCDIFKETIFDDIDRALREEG 88 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCC-----------CCCTTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEecccc-----------ccCCCeEEEEccccCHHHHHHHHHHhhccc
Confidence 468999999999999999999887 589999999974 2346788999999875321 11
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~ 326 (496)
.+.||+|++|+|+..+|... .+......++..+|..|.++| +|||.||..+ +..++...+..
T Consensus 89 ~~~~D~Vlsd~~~~~~g~~~-----------~d~~~~~~l~~~~l~~a~~~L----kpGG~lv~k~---~~~~~~~~~~~ 150 (191)
T 3dou_A 89 IEKVDDVVSDAMAKVSGIPS-----------RDHAVSYQIGQRVMEIAVRYL----RNGGNVLLKQ---FQGDMTNDFIA 150 (191)
T ss_dssp CSSEEEEEECCCCCCCSCHH-----------HHHHHHHHHHHHHHHHHHHHE----EEEEEEEEEE---ECSTHHHHHHH
T ss_pred CCcceEEecCCCcCCCCCcc-----------cCHHHHHHHHHHHHHHHHHHc----cCCCEEEEEE---cCCCCHHHHHH
Confidence 13899999999988877521 222334456677888888876 9999998544 44555555666
Q ss_pred HHHh
Q 010971 327 ALKK 330 (496)
Q Consensus 327 ~L~~ 330 (496)
.++.
T Consensus 151 ~l~~ 154 (191)
T 3dou_A 151 IWRK 154 (191)
T ss_dssp HHGG
T ss_pred HHHH
Confidence 6654
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-11 Score=130.34 Aligned_cols=87 Identities=23% Similarity=0.211 Sum_probs=74.7
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc--cCCCCc
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--LGLNTV 250 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~--~~~~~f 250 (496)
.+.+.++.+|||+|||+|..++.||.. .+.|+|+|+++..++.++.|+..+|+.|+.+..+|+...... +..+.|
T Consensus 281 ~l~~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~f 357 (433)
T 1uwv_A 281 WLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGF 357 (433)
T ss_dssp HHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCC
T ss_pred hhcCCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCC
Confidence 456778899999999999999999876 478999999999999999999999999999999999773211 223689
Q ss_pred CEEEECCCCCCC
Q 010971 251 DRVLLDAPCSGT 262 (496)
Q Consensus 251 D~VLlDaPCSg~ 262 (496)
|+|++|||+.|.
T Consensus 358 D~Vv~dPPr~g~ 369 (433)
T 1uwv_A 358 DKVLLDPARAGA 369 (433)
T ss_dssp SEEEECCCTTCC
T ss_pred CEEEECCCCccH
Confidence 999999998765
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.37 E-value=8.8e-12 Score=118.84 Aligned_cols=131 Identities=25% Similarity=0.286 Sum_probs=92.7
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc--ccCCCCcC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK--VLGLNTVD 251 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~--~~~~~~fD 251 (496)
+.+.+|.+|||+|||+|..+.+++...+ .|.|+|+|+|+.+++.+.+++++. .|+.++..|+..... .+ .+.||
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~-~~~fD 128 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKYSGI-VEKVD 128 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGTTTT-CCCEE
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchhhccc-cccee
Confidence 3467899999999999999999999987 689999999999998888777654 478888889876421 12 26899
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHH-HHHHHHHHhhhhcCCCCcEEEEEe---CCCCCcCCHHHHH-H
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQK-QLILAAIDMVDANSKSGGYIVYST---CSIMVTENEAVID-Y 326 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~-~LL~~A~~~l~~~lkpGG~LVYST---CSi~~eENE~vV~-~ 326 (496)
.|++|.+ +| .|. .+|.++.++| ||||+|+++. |.-.....+++.. .
T Consensus 129 ~V~~~~~---------~~----------------~~~~~~l~~~~r~L----kpgG~l~i~~~~~~~~~~~~~~~~~~~~ 179 (210)
T 1nt2_A 129 LIYQDIA---------QK----------------NQIEILKANAEFFL----KEKGEVVIMVKARSIDSTAEPEEVFKSV 179 (210)
T ss_dssp EEEECCC---------ST----------------THHHHHHHHHHHHE----EEEEEEEEEEEHHHHCTTSCHHHHHHHH
T ss_pred EEEEecc---------Ch----------------hHHHHHHHHHHHHh----CCCCEEEEEEecCCccccCCHHHHHHHH
Confidence 9999842 11 112 2467777776 9999999984 2222233444432 2
Q ss_pred H--HHhCCcEEeec
Q 010971 327 A--LKKRDVKLVPC 338 (496)
Q Consensus 327 ~--L~~~~~~lv~~ 338 (496)
+ |+.. ++++..
T Consensus 180 ~~~l~~~-f~~~~~ 192 (210)
T 1nt2_A 180 LKEMEGD-FKIVKH 192 (210)
T ss_dssp HHHHHTT-SEEEEE
T ss_pred HHHHHhh-cEEeee
Confidence 1 5665 776653
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=132.77 Aligned_cols=108 Identities=25% Similarity=0.304 Sum_probs=91.6
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
.+|.+|||+|||+|+.+++ |. +.+.|+|+|+|+..++.+++|++.+|+ .++.++++|+..+. ..||+|++
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~---~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-----~~fD~Vi~ 264 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK---NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-----VKGNRVIM 264 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT---TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-----CCEEEEEE
T ss_pred CCCCEEEEccCccCHHHHh-cc---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-----CCCcEEEE
Confidence 5799999999999999998 65 357999999999999999999999999 47999999998764 67999999
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~ 326 (496)
|||.++. .++..+++++ +|||.|+|++|+-. .+...+.
T Consensus 265 dpP~~~~--------------------------~~l~~~~~~L----~~gG~l~~~~~~~~---~~~~~~~ 302 (336)
T 2yx1_A 265 NLPKFAH--------------------------KFIDKALDIV----EEGGVIHYYTIGKD---FDKAIKL 302 (336)
T ss_dssp CCTTTGG--------------------------GGHHHHHHHE----EEEEEEEEEEEESS---SHHHHHH
T ss_pred CCcHhHH--------------------------HHHHHHHHHc----CCCCEEEEEEeecC---chHHHHH
Confidence 9996532 4677788876 99999999999987 4444443
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-12 Score=116.46 Aligned_cols=133 Identities=17% Similarity=0.211 Sum_probs=101.7
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCC-CccccC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNE-LPKVLG 246 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~-~~~~~~ 246 (496)
.....+.+.++.+|||+|||+|..+.+++...+ .+.|+++|+++.+++.+++++..+|+. ++ ++..|+.. ++. .
T Consensus 16 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~--~ 91 (178)
T 3hm2_A 16 LAISALAPKPHETLWDIGGGSGSIAIEWLRSTP-QTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDD--V 91 (178)
T ss_dssp HHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSS-SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGG--C
T ss_pred HHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhc--c
Confidence 334556788999999999999999999988764 479999999999999999999999998 78 77888754 222 1
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~ 326 (496)
.+.||+|+++.+... ..++..+.++| +|||+|++++++. ++...+..
T Consensus 92 ~~~~D~i~~~~~~~~--------------------------~~~l~~~~~~L----~~gG~l~~~~~~~---~~~~~~~~ 138 (178)
T 3hm2_A 92 PDNPDVIFIGGGLTA--------------------------PGVFAAAWKRL----PVGGRLVANAVTV---ESEQMLWA 138 (178)
T ss_dssp CSCCSEEEECC-TTC--------------------------TTHHHHHHHTC----CTTCEEEEEECSH---HHHHHHHH
T ss_pred CCCCCEEEECCcccH--------------------------HHHHHHHHHhc----CCCCEEEEEeecc---ccHHHHHH
Confidence 268999998665210 23577777776 9999999988875 45556666
Q ss_pred HHHhCCcEEeec
Q 010971 327 ALKKRDVKLVPC 338 (496)
Q Consensus 327 ~L~~~~~~lv~~ 338 (496)
+++..++++..+
T Consensus 139 ~~~~~~~~~~~~ 150 (178)
T 3hm2_A 139 LRKQFGGTISSF 150 (178)
T ss_dssp HHHHHCCEEEEE
T ss_pred HHHHcCCeeEEE
Confidence 677666666544
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.9e-12 Score=122.70 Aligned_cols=134 Identities=20% Similarity=0.175 Sum_probs=102.8
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEecCCCCCccccCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-GVTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~-g~~nv~v~~~D~~~~~~~~~~ 247 (496)
..+..+++.++.+|||+|||+|..+.+++..+++.+.|+++|+++.+++.+++++... |..++.+...|+...+ +..
T Consensus 87 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~--~~~ 164 (258)
T 2pwy_A 87 AMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE--LEE 164 (258)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC--CCT
T ss_pred HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC--CCC
Confidence 4455677889999999999999999999998765689999999999999999999998 8778999999987653 333
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHH
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~ 327 (496)
+.||+|++|+|+. ..+|..+.++| +|||+|+.++.+. +.-.-+...
T Consensus 165 ~~~D~v~~~~~~~---------------------------~~~l~~~~~~L----~~gG~l~~~~~~~---~~~~~~~~~ 210 (258)
T 2pwy_A 165 AAYDGVALDLMEP---------------------------WKVLEKAALAL----KPDRFLVAYLPNI---TQVLELVRA 210 (258)
T ss_dssp TCEEEEEEESSCG---------------------------GGGHHHHHHHE----EEEEEEEEEESCH---HHHHHHHHH
T ss_pred CCcCEEEECCcCH---------------------------HHHHHHHHHhC----CCCCEEEEEeCCH---HHHHHHHHH
Confidence 6899999988721 13577777776 9999999877654 112222233
Q ss_pred HHhCCcEEeec
Q 010971 328 LKKRDVKLVPC 338 (496)
Q Consensus 328 L~~~~~~lv~~ 338 (496)
|+..++..+.+
T Consensus 211 l~~~gf~~~~~ 221 (258)
T 2pwy_A 211 AEAHPFRLERV 221 (258)
T ss_dssp HTTTTEEEEEE
T ss_pred HHHCCCceEEE
Confidence 44556655443
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-12 Score=126.53 Aligned_cols=128 Identities=20% Similarity=0.248 Sum_probs=100.6
Q ss_pred hhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccC
Q 010971 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLG 246 (496)
Q Consensus 168 ~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~ 246 (496)
......+++.+|.+|||+|||+|..+.+++..+++.+.|+++|+++.+++.++++++.+|+.+ +.+...|+... +.
T Consensus 83 ~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~ 159 (255)
T 3mb5_A 83 ALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG---IE 159 (255)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC---CC
T ss_pred HHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc---cC
Confidence 344566788899999999999999999999997767899999999999999999999999987 99999998754 33
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~ 326 (496)
.+.||.|++|+|+. ..+|.++.++| +|||+|+..+-+. +....+..
T Consensus 160 ~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L----~~gG~l~~~~~~~---~~~~~~~~ 205 (255)
T 3mb5_A 160 EENVDHVILDLPQP---------------------------ERVVEHAAKAL----KPGGFFVAYTPCS---NQVMRLHE 205 (255)
T ss_dssp CCSEEEEEECSSCG---------------------------GGGHHHHHHHE----EEEEEEEEEESSH---HHHHHHHH
T ss_pred CCCcCEEEECCCCH---------------------------HHHHHHHHHHc----CCCCEEEEEECCH---HHHHHHHH
Confidence 46799999998832 13477777776 9999998654332 22333444
Q ss_pred HHHhCC
Q 010971 327 ALKKRD 332 (496)
Q Consensus 327 ~L~~~~ 332 (496)
.+++.+
T Consensus 206 ~l~~~g 211 (255)
T 3mb5_A 206 KLREFK 211 (255)
T ss_dssp HHHHTG
T ss_pred HHHHcC
Confidence 555555
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-12 Score=125.90 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=82.3
Q ss_pred ccEEEeCC--cchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEE
Q 010971 158 GFYMLQSA--SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVC 234 (496)
Q Consensus 158 G~~~iQd~--sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~ 234 (496)
|+|..+.. ...+...+....++.+|||+|||+|+.+.+++.. .+.|+|+|+++.+++.+++|+..+|+ .++.++
T Consensus 56 ~~~~~~~~~~~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~ 132 (241)
T 3gdh_A 56 GWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADKIEFI 132 (241)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred ceeecCHHHHHHHHHHHhhhccCCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEE
Confidence 44444433 3344444444458999999999999999999985 27999999999999999999999999 589999
Q ss_pred ecCCCCCccccCCCCcCEEEECCCCCCCCccc
Q 010971 235 NYDGNELPKVLGLNTVDRVLLDAPCSGTGVIS 266 (496)
Q Consensus 235 ~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~ 266 (496)
+.|+..++. ...||+|++|+||.+.+...
T Consensus 133 ~~d~~~~~~---~~~~D~v~~~~~~~~~~~~~ 161 (241)
T 3gdh_A 133 CGDFLLLAS---FLKADVVFLSPPWGGPDYAT 161 (241)
T ss_dssp ESCHHHHGG---GCCCSEEEECCCCSSGGGGG
T ss_pred ECChHHhcc---cCCCCEEEECCCcCCcchhh
Confidence 999987752 36899999999999876543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-12 Score=122.39 Aligned_cols=112 Identities=18% Similarity=0.125 Sum_probs=85.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEecCCCCCccccCCCC-cCEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV--TNTIVCNYDGNELPKVLGLNT-VDRVL 254 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~--~nv~v~~~D~~~~~~~~~~~~-fD~VL 254 (496)
++.+|||+|||+|..+..++.. +.+.|+++|+|+..++.+++|+..+|+ .++.+++.|+..+......+. ||+|+
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 130 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVF 130 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHc--cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEE
Confidence 6889999999999999987665 236899999999999999999999999 689999999876533222367 99999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
+|+|+. .+. ...++....+ .+.|+|||+|++++|+..
T Consensus 131 ~~~~~~-~~~----------------------~~~~l~~~~~--~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 131 LDPPFH-FNL----------------------AEQAISLLCE--NNWLKPNALIYVETEKDK 167 (201)
T ss_dssp ECCCSS-SCH----------------------HHHHHHHHHH--TTCEEEEEEEEEEEESSS
T ss_pred ECCCCC-Ccc----------------------HHHHHHHHHh--cCccCCCcEEEEEECCCC
Confidence 999942 110 1123433322 122499999999999875
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.9e-13 Score=129.94 Aligned_cols=130 Identities=13% Similarity=0.047 Sum_probs=98.0
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc-cCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-LGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~-~~~~~fD~VL 254 (496)
+.++.+|||+|||+|..++.+|...+ .+.|+++|+++.++..+++|++++|+.|+.++++|+..++.. ...+.||.|+
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~ 156 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRP-ELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAV 156 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEE
Confidence 46789999999999999999998874 479999999999999999999999999999999998766431 1136899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcE
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVK 334 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~ 334 (496)
+.+- .. ...++..+.++| +|||++++..+....+|-+ .+...+...+++
T Consensus 157 s~a~----------------~~----------~~~ll~~~~~~L----kpgG~l~~~~g~~~~~e~~-~~~~~l~~~G~~ 205 (249)
T 3g89_A 157 ARAV----------------AP----------LCVLSELLLPFL----EVGGAAVAMKGPRVEEELA-PLPPALERLGGR 205 (249)
T ss_dssp EESS----------------CC----------HHHHHHHHGGGE----EEEEEEEEEECSCCHHHHT-THHHHHHHHTEE
T ss_pred ECCc----------------CC----------HHHHHHHHHHHc----CCCeEEEEEeCCCcHHHHH-HHHHHHHHcCCe
Confidence 8531 00 124566666765 9999999988875443322 233445566666
Q ss_pred Eee
Q 010971 335 LVP 337 (496)
Q Consensus 335 lv~ 337 (496)
++.
T Consensus 206 ~~~ 208 (249)
T 3g89_A 206 LGE 208 (249)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.34 E-value=6.3e-12 Score=118.89 Aligned_cols=140 Identities=14% Similarity=0.124 Sum_probs=100.6
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.++.+|||+|||+|..+..++...+ .+.|+|+|+++..+..+++|+.+.|+.|+.++..|+..++..+..+.||.|+++
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~ 118 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLN 118 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence 4688999999999999999999875 479999999999999999999999999999999999887654445789999999
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEEe
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLV 336 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~lv 336 (496)
.|.. ..+.. ..... ..+..+|..+.++| +|||.|+++|-.. ..-..+...+...++.++
T Consensus 119 ~~~~---------~~~~~---~~~~~--~~~~~~l~~~~~~L----kpgG~l~~~~~~~---~~~~~~~~~~~~~g~~~~ 177 (214)
T 1yzh_A 119 FSDP---------WPKKR---HEKRR--LTYKTFLDTFKRIL----PENGEIHFKTDNR---GLFEYSLVSFSQYGMKLN 177 (214)
T ss_dssp SCCC---------CCSGG---GGGGS--TTSHHHHHHHHHHS----CTTCEEEEEESCH---HHHHHHHHHHHHHTCEEE
T ss_pred CCCC---------ccccc---hhhhc--cCCHHHHHHHHHHc----CCCcEEEEEeCCH---HHHHHHHHHHHHCCCeee
Confidence 7621 11100 00000 01456778887776 9999998876321 111222233445577766
Q ss_pred ec
Q 010971 337 PC 338 (496)
Q Consensus 337 ~~ 338 (496)
.+
T Consensus 178 ~~ 179 (214)
T 1yzh_A 178 GV 179 (214)
T ss_dssp EE
T ss_pred ec
Confidence 54
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=8.5e-13 Score=132.56 Aligned_cols=131 Identities=14% Similarity=0.127 Sum_probs=93.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc--C--CCeEEEEecCCCCCccccCCCCcCEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--G--VTNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~--g--~~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
.+.+|||+|||+|+.+..++...+ .+.|+++|+++..++.+++++..+ + ..++.++..|+..+.... .+.||+|
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-~~~fD~I 167 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF-KNEFDVI 167 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC-SSCEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC-CCCceEE
Confidence 458999999999999999887643 479999999999999999998652 2 357999999987643222 3689999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC--CCcCCHHHHHHHHHhC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI--MVTENEAVIDYALKKR 331 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi--~~eENE~vV~~~L~~~ 331 (496)
++|+|+.+.|.. . ...+.+++..+.+.| +|||.|++.+|+. ..++...+++.+.+.+
T Consensus 168 i~d~~~~~~~~~----~-------------~l~~~~~l~~~~~~L----kpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F 226 (296)
T 1inl_A 168 IIDSTDPTAGQG----G-------------HLFTEEFYQACYDAL----KEDGVFSAETEDPFYDIGWFKLAYRRISKVF 226 (296)
T ss_dssp EEEC---------------------------CCSHHHHHHHHHHE----EEEEEEEEECCCTTTTHHHHHHHHHHHHHHC
T ss_pred EEcCCCcccCch----h-------------hhhHHHHHHHHHHhc----CCCcEEEEEccCcccCHHHHHHHHHHHHHHC
Confidence 999987433310 0 002345677777776 9999999999984 4455666666655553
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-12 Score=127.57 Aligned_cols=122 Identities=20% Similarity=0.276 Sum_probs=95.6
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
+.++.+|||+|||+|..+..++.. ..+.|+++|+++..++.+++++...|+.+ +.++..|+..++ +..+.||+|+
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~i~ 119 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP--FRNEELDLIW 119 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--CCTTCEEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC--CCCCCEEEEE
Confidence 578999999999999999999887 34699999999999999999999999965 999999998876 3347899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHH
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L 328 (496)
+..+.... . ...+|..+.++| +|||+|+++++++........+..++
T Consensus 120 ~~~~~~~~-------------~----------~~~~l~~~~~~L----kpgG~l~~~~~~~~~~~~~~~~~~~~ 166 (267)
T 3kkz_A 120 SEGAIYNI-------------G----------FERGLNEWRKYL----KKGGYLAVSECSWFTDERPAEINDFW 166 (267)
T ss_dssp ESSCGGGT-------------C----------HHHHHHHHGGGE----EEEEEEEEEEEEESSSCCCHHHHHHH
T ss_pred EcCCceec-------------C----------HHHHHHHHHHHc----CCCCEEEEEEeeecCCCChHHHHHHH
Confidence 86442111 1 123567777765 99999999999876665544444333
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-12 Score=123.65 Aligned_cols=117 Identities=9% Similarity=0.060 Sum_probs=90.8
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGL 247 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~ 247 (496)
+...++...++.+|||+|||+|..|.+++..++..+.|+++|+++.+++.+++++.+.|+.+ +.++.+|+..+.... .
T Consensus 47 ~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~ 125 (210)
T 3c3p_A 47 LLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ-R 125 (210)
T ss_dssp HHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC-C
T ss_pred HHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC-C
Confidence 33333333467899999999999999999988656899999999999999999999999864 899999986542222 2
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
+ ||.|++|+++.. +..++..+.++| +|||+|++.++.+.
T Consensus 126 ~-fD~v~~~~~~~~-------------------------~~~~l~~~~~~L----kpgG~lv~~~~~~~ 164 (210)
T 3c3p_A 126 D-IDILFMDCDVFN-------------------------GADVLERMNRCL----AKNALLIAVNALRR 164 (210)
T ss_dssp S-EEEEEEETTTSC-------------------------HHHHHHHHGGGE----EEEEEEEEESSSSC
T ss_pred C-CCEEEEcCChhh-------------------------hHHHHHHHHHhc----CCCeEEEEECcccc
Confidence 5 999999965321 234577777765 99999999877653
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-11 Score=119.37 Aligned_cols=131 Identities=16% Similarity=0.081 Sum_probs=97.1
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc-cCCCCcCEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-LGLNTVDRV 253 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~-~~~~~fD~V 253 (496)
.+.++.+|||+|||+|..+..++...+ .+.|+++|+++.+++.+++++.++|+.++.++++|+..++.. ...+.||.|
T Consensus 67 ~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V 145 (240)
T 1xdz_A 67 DFNQVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIV 145 (240)
T ss_dssp CGGGCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEE
Confidence 345788999999999999999998654 479999999999999999999999998999999998765421 013689999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCc
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDV 333 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~ 333 (496)
++++. .. ...++..+.++| +|||+|++..+....+|-+.+ ...++..++
T Consensus 146 ~~~~~----------------~~----------~~~~l~~~~~~L----kpgG~l~~~~g~~~~~~~~~~-~~~l~~~g~ 194 (240)
T 1xdz_A 146 TARAV----------------AR----------LSVLSELCLPLV----KKNGLFVALKAASAEEELNAG-KKAITTLGG 194 (240)
T ss_dssp EEECC----------------SC----------HHHHHHHHGGGE----EEEEEEEEEECC-CHHHHHHH-HHHHHHTTE
T ss_pred EEecc----------------CC----------HHHHHHHHHHhc----CCCCEEEEEeCCCchHHHHHH-HHHHHHcCC
Confidence 98652 00 234677777765 999999998877654433332 334556666
Q ss_pred EEee
Q 010971 334 KLVP 337 (496)
Q Consensus 334 ~lv~ 337 (496)
+++.
T Consensus 195 ~~~~ 198 (240)
T 1xdz_A 195 ELEN 198 (240)
T ss_dssp EEEE
T ss_pred eEeE
Confidence 6543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.6e-12 Score=123.62 Aligned_cols=114 Identities=19% Similarity=0.198 Sum_probs=94.5
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc-C--CCeEEEEecCCCCCcccc
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-G--VTNTIVCNYDGNELPKVL 245 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~-g--~~nv~v~~~D~~~~~~~~ 245 (496)
..+..+++.+|.+|||+|||+|..+.+++..+++.+.|+++|+++.+++.+++|+... | ..++.+...|+...+ +
T Consensus 90 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~--~ 167 (280)
T 1i9g_A 90 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE--L 167 (280)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC--C
T ss_pred HHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC--C
Confidence 4455678889999999999999999999998766689999999999999999999998 7 678999999987664 2
Q ss_pred CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 246 ~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
..+.||+|++|+| +|. .+|.++.++| +|||+|++++++.
T Consensus 168 ~~~~~D~v~~~~~---------~~~------------------~~l~~~~~~L----~pgG~l~~~~~~~ 206 (280)
T 1i9g_A 168 PDGSVDRAVLDML---------APW------------------EVLDAVSRLL----VAGGVLMVYVATV 206 (280)
T ss_dssp CTTCEEEEEEESS---------CGG------------------GGHHHHHHHE----EEEEEEEEEESSH
T ss_pred CCCceeEEEECCc---------CHH------------------HHHHHHHHhC----CCCCEEEEEeCCH
Confidence 3468999999876 111 3477777776 9999999988765
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.3e-13 Score=126.05 Aligned_cols=120 Identities=12% Similarity=0.135 Sum_probs=94.2
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCcccc
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVL 245 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~ 245 (496)
..+...++...++.+|||+|||+|..|.+++..+++.+.|+++|+++.+++.+++++...|+.+ +.++.+|+..+...+
T Consensus 53 ~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 132 (225)
T 3tr6_A 53 AQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAEL 132 (225)
T ss_dssp HHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHh
Confidence 3444444455678899999999999999999988766899999999999999999999999976 999999986542222
Q ss_pred CC----CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 246 GL----NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 246 ~~----~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.. +.||.|++|++. ..+..++..+.++| +|||+|++..+.+
T Consensus 133 ~~~~~~~~fD~v~~~~~~-------------------------~~~~~~l~~~~~~L----~pgG~lv~~~~~~ 177 (225)
T 3tr6_A 133 IHAGQAWQYDLIYIDADK-------------------------ANTDLYYEESLKLL----REGGLIAVDNVLR 177 (225)
T ss_dssp HTTTCTTCEEEEEECSCG-------------------------GGHHHHHHHHHHHE----EEEEEEEEECSSG
T ss_pred hhccCCCCccEEEECCCH-------------------------HHHHHHHHHHHHhc----CCCcEEEEeCCCc
Confidence 11 689999999871 11234677777776 9999999877664
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-11 Score=115.12 Aligned_cols=141 Identities=16% Similarity=0.240 Sum_probs=108.6
Q ss_pred HHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCC
Q 010971 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~ 249 (496)
....+.+.++.+|||+|||+|..+..++...+..+.|+++|+++..++.+++++...|+.++.++..|+..++ +..+.
T Consensus 29 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 106 (219)
T 3dh0_A 29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIP--LPDNT 106 (219)
T ss_dssp HHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCS--SCSSC
T ss_pred HHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCC--CCCCC
Confidence 3455677889999999999999999999987556799999999999999999999999989999999998876 33478
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCc---------CC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT---------EN 320 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~e---------EN 320 (496)
||+|++... +..-++ ...+|..+.++| +|||+|+++++..... -+
T Consensus 107 fD~v~~~~~------l~~~~~----------------~~~~l~~~~~~L----kpgG~l~i~~~~~~~~~~~~~~~~~~~ 160 (219)
T 3dh0_A 107 VDFIFMAFT------FHELSE----------------PLKFLEELKRVA----KPFAYLAIIDWKKEERDKGPPPEEVYS 160 (219)
T ss_dssp EEEEEEESC------GGGCSS----------------HHHHHHHHHHHE----EEEEEEEEEEECSSCCSSSCCGGGSCC
T ss_pred eeEEEeehh------hhhcCC----------------HHHHHHHHHHHh----CCCeEEEEEEecccccccCCchhcccC
Confidence 999998532 111110 145677788876 9999999988664432 13
Q ss_pred HHHHHHHHHhCCcEEeec
Q 010971 321 EAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 321 E~vV~~~L~~~~~~lv~~ 338 (496)
.+.+..+++..+++++..
T Consensus 161 ~~~~~~~l~~~Gf~~~~~ 178 (219)
T 3dh0_A 161 EWEVGLILEDAGIRVGRV 178 (219)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 566667777777776553
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.30 E-value=6.6e-12 Score=119.51 Aligned_cols=118 Identities=17% Similarity=0.151 Sum_probs=91.5
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.++.+|||+|||+|..+..||...+ ...|+|+|+++.++..+++++.+.|+.|+.++.+|+..++..+..+.||.|++.
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~ 115 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLN 115 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred CCCceEEEEecCCCHHHHHHHHHCC-CCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence 4688999999999999999999864 479999999999999999999999999999999999887654555789999987
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
.|+-- .+....+.+ + .+..+|..+.+.| +|||.|+++|-
T Consensus 116 ~~~p~----~~~~~~~~r--------l--~~~~~l~~~~~~L----kpgG~l~~~td 154 (213)
T 2fca_A 116 FSDPW----PKKRHEKRR--------L--TYSHFLKKYEEVM----GKGGSIHFKTD 154 (213)
T ss_dssp SCCCC----CSGGGGGGS--------T--TSHHHHHHHHHHH----TTSCEEEEEES
T ss_pred CCCCC----cCccccccc--------c--CcHHHHHHHHHHc----CCCCEEEEEeC
Confidence 65310 000000101 0 1456788888877 99999998873
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-11 Score=126.67 Aligned_cols=155 Identities=14% Similarity=0.112 Sum_probs=111.8
Q ss_pred cccccccEEEeCCcch------hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 010971 153 PEYMAGFYMLQSASSF------LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM 226 (496)
Q Consensus 153 ~~~~~G~~~iQd~sS~------l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~ 226 (496)
..+..|+-..|..+.+ ..+.++ +.++.+|||+|||+|+.++.++.... .+.|+|+|+|+..++.++.|+...
T Consensus 187 ~l~~rgyr~~~~~a~l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~-~~~v~g~Dis~~~l~~A~~n~~~~ 264 (373)
T 3tm4_A 187 SLHKRPWRVYDHPAHLKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRY-SGEIIGIEKYRKHLIGAEMNALAA 264 (373)
T ss_dssp CTTCCTTCCSCCTTCCCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTC-CSCEEEEESCHHHHHHHHHHHHHT
T ss_pred ccccCCcccccCCCCccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHc
Confidence 4566675555544432 122334 67899999999999999999887643 358999999999999999999999
Q ss_pred CC-CeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 010971 227 GV-TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305 (496)
Q Consensus 227 g~-~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpG 305 (496)
|+ .++.+.+.|+..++.. .+.||+|++|||+.-. ......+..++.+++..+.+. | |
T Consensus 265 gl~~~i~~~~~D~~~~~~~--~~~fD~Ii~npPyg~r--------------~~~~~~~~~ly~~~~~~l~r~----l--~ 322 (373)
T 3tm4_A 265 GVLDKIKFIQGDATQLSQY--VDSVDFAISNLPYGLK--------------IGKKSMIPDLYMKFFNELAKV----L--E 322 (373)
T ss_dssp TCGGGCEEEECCGGGGGGT--CSCEEEEEEECCCC--------------------CCHHHHHHHHHHHHHHH----E--E
T ss_pred CCCCceEEEECChhhCCcc--cCCcCEEEECCCCCcc--------------cCcchhHHHHHHHHHHHHHHH----c--C
Confidence 99 5799999999887632 3789999999996321 011112344566777777665 3 7
Q ss_pred cEEEEEeCCCCCcCCHHHHHHHHHhCCcEEee
Q 010971 306 GYIVYSTCSIMVTENEAVIDYALKKRDVKLVP 337 (496)
Q Consensus 306 G~LVYSTCSi~~eENE~vV~~~L~~~~~~lv~ 337 (496)
|.++|.|| +...+...+.+.++++..
T Consensus 323 g~~~~i~~------~~~~~~~~~~~~G~~~~~ 348 (373)
T 3tm4_A 323 KRGVFITT------EKKAIEEAIAENGFEIIH 348 (373)
T ss_dssp EEEEEEES------CHHHHHHHHHHTTEEEEE
T ss_pred CeEEEEEC------CHHHHHHHHHHcCCEEEE
Confidence 88889888 445566667777776654
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-11 Score=115.13 Aligned_cols=125 Identities=12% Similarity=0.079 Sum_probs=98.5
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
+.++.+|||+|||+|..+..++.. +.+.|+++|+++..++.+++++...|+.++.+...|+..++ .+.||.|++
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~fD~i~~ 131 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKL--GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV----DGKFDLIVA 131 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC----CSCEEEEEE
T ss_pred ccCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC----CCCceEEEE
Confidence 568999999999999999998864 34699999999999999999999999988999999987654 278999999
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEE
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKL 335 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~l 335 (496)
++|. .....+|..+.++| +|||+|++++... +....+...+.+.++++
T Consensus 132 ~~~~-------------------------~~~~~~l~~~~~~L----~~gG~l~~~~~~~---~~~~~~~~~~~~~Gf~~ 179 (205)
T 3grz_A 132 NILA-------------------------EILLDLIPQLDSHL----NEDGQVIFSGIDY---LQLPKIEQALAENSFQI 179 (205)
T ss_dssp ESCH-------------------------HHHHHHGGGSGGGE----EEEEEEEEEEEEG---GGHHHHHHHHHHTTEEE
T ss_pred CCcH-------------------------HHHHHHHHHHHHhc----CCCCEEEEEecCc---ccHHHHHHHHHHcCCce
Confidence 8761 11234566666655 9999999976543 34556667777778777
Q ss_pred eec
Q 010971 336 VPC 338 (496)
Q Consensus 336 v~~ 338 (496)
+..
T Consensus 180 ~~~ 182 (205)
T 3grz_A 180 DLK 182 (205)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.7e-11 Score=113.24 Aligned_cols=126 Identities=20% Similarity=0.202 Sum_probs=96.9
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
.+.++.+|||+|||+|..+..++.. +.+.|+++|+++..++.++.|+..+|+ ++.+++.|+..++ ..||+|+
T Consensus 46 ~~~~~~~vlD~g~G~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-----~~~D~v~ 117 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN-----SRVDIVI 117 (207)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC-----CCCSEEE
T ss_pred CCCCcCEEEEeeCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC-----CCCCEEE
Confidence 4668999999999999999998876 335899999999999999999999998 8999999988764 4799999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcE
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVK 334 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~ 334 (496)
+|||+.... +. ....+|..+.+.+ || +|+.| +.+.++.+.+..++...+++
T Consensus 118 ~~~p~~~~~---~~-----------------~~~~~l~~~~~~l------~~--~~~~~-~~~~~~~~~~~~~l~~~g~~ 168 (207)
T 1wy7_A 118 MNPPFGSQR---KH-----------------ADRPFLLKAFEIS------DV--VYSIH-LAKPEVRRFIEKFSWEHGFV 168 (207)
T ss_dssp ECCCCSSSS---TT-----------------TTHHHHHHHHHHC------SE--EEEEE-ECCHHHHHHHHHHHHHTTEE
T ss_pred EcCCCcccc---CC-----------------chHHHHHHHHHhc------Cc--EEEEE-eCCcCCHHHHHHHHHHCCCe
Confidence 999974321 11 1134567777652 43 67777 33456777788888887766
Q ss_pred Eee
Q 010971 335 LVP 337 (496)
Q Consensus 335 lv~ 337 (496)
+..
T Consensus 169 ~~~ 171 (207)
T 1wy7_A 169 VTH 171 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-11 Score=116.15 Aligned_cols=120 Identities=17% Similarity=0.150 Sum_probs=94.0
Q ss_pred ccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecC
Q 010971 158 GFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD 237 (496)
Q Consensus 158 G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D 237 (496)
|.++.+..........+.+.++.+|||+|||+|..+.+++.. .+.|+++|+++.+++.+++++..+|+.++.+...|
T Consensus 57 ~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d 133 (210)
T 3lbf_A 57 GQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGD 133 (210)
T ss_dssp SCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred CCEeCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECC
Confidence 444444443444556678889999999999999999999987 37999999999999999999999999999999999
Q ss_pred CCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 238 GNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 238 ~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
+...... .+.||+|+++.++... | ..+.++| +|||+|+.+...
T Consensus 134 ~~~~~~~--~~~~D~i~~~~~~~~~------~----------------------~~~~~~L----~pgG~lv~~~~~ 176 (210)
T 3lbf_A 134 GWQGWQA--RAPFDAIIVTAAPPEI------P----------------------TALMTQL----DEGGILVLPVGE 176 (210)
T ss_dssp GGGCCGG--GCCEEEEEESSBCSSC------C----------------------THHHHTE----EEEEEEEEEECS
T ss_pred cccCCcc--CCCccEEEEccchhhh------h----------------------HHHHHhc----ccCcEEEEEEcC
Confidence 8775432 3789999998654221 1 1234554 999999998766
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4e-11 Score=115.53 Aligned_cols=115 Identities=17% Similarity=0.284 Sum_probs=92.4
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~V 253 (496)
.+.++.+|||+|||+|..+..++...+ +.|+++|+++..+..+++++...|+.+ +.++..|+..++ +..+.||+|
T Consensus 43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v 118 (257)
T 3f4k_A 43 ELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP--FQNEELDLI 118 (257)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCS--SCTTCEEEE
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCC--CCCCCEEEE
Confidence 456889999999999999999999864 499999999999999999999999976 999999998876 334789999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN 320 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eEN 320 (496)
++....... .. ..+|..+.++| +|||+|+++++++.....
T Consensus 119 ~~~~~l~~~-------------~~----------~~~l~~~~~~L----~pgG~l~~~~~~~~~~~~ 158 (257)
T 3f4k_A 119 WSEGAIYNI-------------GF----------ERGMNEWSKYL----KKGGFIAVSEASWFTSER 158 (257)
T ss_dssp EEESCSCCC-------------CH----------HHHHHHHHTTE----EEEEEEEEEEEEESSSCC
T ss_pred EecChHhhc-------------CH----------HHHHHHHHHHc----CCCcEEEEEEeeccCCCC
Confidence 986432111 11 23577777776 999999999987655443
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.28 E-value=7e-12 Score=118.23 Aligned_cols=111 Identities=16% Similarity=0.073 Sum_probs=84.1
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
++.+|||+|||+|..++.+++. ....|+++|+|+..++.+++|+..+|+.++.+++.|+..+... ..+.||+|++|+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~--~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~-~~~~fD~V~~~~ 130 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ-KGTPHNIVFVDP 130 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS-CCCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHhc--CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh-cCCCCCEEEECC
Confidence 6899999999999999987765 2358999999999999999999999998899999998764221 236899999999
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
|+. .+. ...++....+. +.|+|||+|++++|+..
T Consensus 131 p~~-~~~----------------------~~~~l~~l~~~--~~L~pgG~l~i~~~~~~ 164 (202)
T 2fpo_A 131 PFR-RGL----------------------LEETINLLEDN--GWLADEALIYVESEVEN 164 (202)
T ss_dssp SSS-TTT----------------------HHHHHHHHHHT--TCEEEEEEEEEEEEGGG
T ss_pred CCC-CCc----------------------HHHHHHHHHhc--CccCCCcEEEEEECCCc
Confidence 942 110 01233333331 12499999999988754
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.2e-12 Score=124.84 Aligned_cols=123 Identities=16% Similarity=0.165 Sum_probs=94.7
Q ss_pred eCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCC
Q 010971 163 QSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNEL 241 (496)
Q Consensus 163 Qd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~ 241 (496)
+.....+...++...++.+|||+|||+|..++.++..++..+.|+++|+++.+++.+++++.+.|+. ++.++.+|+..+
T Consensus 64 ~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~ 143 (247)
T 1sui_A 64 SADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV 143 (247)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred CHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH
Confidence 3333444444455556789999999999999999999876689999999999999999999999995 599999998764
Q ss_pred -cccc----CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 242 -PKVL----GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 242 -~~~~----~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
+... ..+.||.|++|+++. ....++..+.++| +|||+|++..+-
T Consensus 144 l~~l~~~~~~~~~fD~V~~d~~~~-------------------------~~~~~l~~~~~~L----kpGG~lv~d~~~ 192 (247)
T 1sui_A 144 LDEMIKDEKNHGSYDFIFVDADKD-------------------------NYLNYHKRLIDLV----KVGGVIGYDNTL 192 (247)
T ss_dssp HHHHHHSGGGTTCBSEEEECSCST-------------------------THHHHHHHHHHHB----CTTCCEEEECTT
T ss_pred HHHHHhccCCCCCEEEEEEcCchH-------------------------HHHHHHHHHHHhC----CCCeEEEEecCC
Confidence 2211 136899999998631 0134577777776 999999987643
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.3e-12 Score=122.08 Aligned_cols=122 Identities=12% Similarity=0.110 Sum_probs=95.2
Q ss_pred eCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCC
Q 010971 163 QSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNEL 241 (496)
Q Consensus 163 Qd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~ 241 (496)
+.....+...++...++.+|||+|||+|..+..++...+ .+.|+++|+++.+++.+++++.+.|+. ++.++.+|+..+
T Consensus 56 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 134 (232)
T 3ntv_A 56 DRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQ 134 (232)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC
T ss_pred CHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH
Confidence 333334445555556789999999999999999998544 589999999999999999999999996 799999999775
Q ss_pred cc-ccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 242 PK-VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 242 ~~-~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.. .. .+.||+|++|+++.. +..++..+.++| +|||+||+..+.+
T Consensus 135 ~~~~~-~~~fD~V~~~~~~~~-------------------------~~~~l~~~~~~L----kpgG~lv~d~~~~ 179 (232)
T 3ntv_A 135 FENVN-DKVYDMIFIDAAKAQ-------------------------SKKFFEIYTPLL----KHQGLVITDNVLY 179 (232)
T ss_dssp HHHHT-TSCEEEEEEETTSSS-------------------------HHHHHHHHGGGE----EEEEEEEEECTTG
T ss_pred HHhhc-cCCccEEEEcCcHHH-------------------------HHHHHHHHHHhc----CCCeEEEEeeCCc
Confidence 33 22 378999999987432 234677777776 9999999865544
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-11 Score=116.93 Aligned_cols=104 Identities=18% Similarity=0.216 Sum_probs=85.5
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcC----CCcEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEecCCCCCc---
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMK----NTGLIYANEMKASRLKSLTANLHRMG-----VTNTIVCNYDGNELP--- 242 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~----~~g~V~A~D~s~~rl~~l~~nl~r~g-----~~nv~v~~~D~~~~~--- 242 (496)
.+.++.+|||+|||+|..+.+++..++ +.+.|+++|+++..++.+++++...| ..++.+...|+....
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 477899999999999999999999875 55799999999999999999999998 678999999987643
Q ss_pred -cccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 243 -KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 243 -~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
.. ...||+|++++++.. ++..+.+.| +|||+||.+.
T Consensus 157 ~~~--~~~fD~I~~~~~~~~----------------------------~~~~~~~~L----kpgG~lv~~~ 193 (227)
T 2pbf_A 157 KKE--LGLFDAIHVGASASE----------------------------LPEILVDLL----AENGKLIIPI 193 (227)
T ss_dssp HHH--HCCEEEEEECSBBSS----------------------------CCHHHHHHE----EEEEEEEEEE
T ss_pred Ccc--CCCcCEEEECCchHH----------------------------HHHHHHHhc----CCCcEEEEEE
Confidence 22 268999999988642 134455665 9999998764
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.5e-11 Score=114.90 Aligned_cols=122 Identities=14% Similarity=0.144 Sum_probs=98.2
Q ss_pred eCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc
Q 010971 163 QSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP 242 (496)
Q Consensus 163 Qd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~ 242 (496)
|++++...+..+++.++.+|||+|||+|..+..++... +.|+++|+++..++.+++++...|+.++.+...|+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 82 (239)
T 1xxl_A 6 HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP 82 (239)
T ss_dssp CHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC
T ss_pred cCCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCC
Confidence 56777888889999999999999999999999888763 589999999999999999999999999999999998876
Q ss_pred cccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 243 KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 243 ~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
+..+.||+|++... +.. +. + ...+|..+.++| +|||+|+.+++..
T Consensus 83 --~~~~~fD~v~~~~~------l~~-------~~--~-------~~~~l~~~~~~L----kpgG~l~~~~~~~ 127 (239)
T 1xxl_A 83 --FPDDSFDIITCRYA------AHH-------FS--D-------VRKAVREVARVL----KQDGRFLLVDHYA 127 (239)
T ss_dssp --SCTTCEEEEEEESC------GGG-------CS--C-------HHHHHHHHHHHE----EEEEEEEEEEECB
T ss_pred --CCCCcEEEEEECCc------hhh-------cc--C-------HHHHHHHHHHHc----CCCcEEEEEEcCC
Confidence 33478999997422 111 10 1 134677777776 9999999877653
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.1e-11 Score=110.17 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=94.7
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe--EEEEecCCCCCccc
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN--TIVCNYDGNELPKV 244 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n--v~v~~~D~~~~~~~ 244 (496)
+......+.+.++.+|||+|||+|..+..++.. .+.|+++|+++..++.++.++...++.+ +.+...|+.....
T Consensus 41 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~- 116 (194)
T 1dus_A 41 TKILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK- 116 (194)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT-
T ss_pred HHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc-
Confidence 344455667778999999999999999988876 4799999999999999999999999987 9999999876432
Q ss_pred cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 245 ~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.+.||+|++++|... .. .....+|..+.++| +|||.+++++++.
T Consensus 117 --~~~~D~v~~~~~~~~--------------~~-------~~~~~~l~~~~~~L----~~gG~l~~~~~~~ 160 (194)
T 1dus_A 117 --DRKYNKIITNPPIRA--------------GK-------EVLHRIIEEGKELL----KDNGEIWVVIQTK 160 (194)
T ss_dssp --TSCEEEEEECCCSTT--------------CH-------HHHHHHHHHHHHHE----EEEEEEEEEEEST
T ss_pred --cCCceEEEECCCccc--------------ch-------hHHHHHHHHHHHHc----CCCCEEEEEECCC
Confidence 368999999987421 11 12345677777776 9999999988775
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.8e-12 Score=121.34 Aligned_cols=119 Identities=13% Similarity=0.158 Sum_probs=92.5
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCC-cccc-
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL-PKVL- 245 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~-~~~~- 245 (496)
+...++...++.+|||+|||+|..+..++..++..+.|+++|+++..++.+++++.+.|+.+ +.++.+|+... +...
T Consensus 63 ~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~ 142 (232)
T 3cbg_A 63 FLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQ 142 (232)
T ss_dssp HHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHT
T ss_pred HHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh
Confidence 33333444567899999999999999999988756899999999999999999999999964 89999997553 2211
Q ss_pred CC--CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 246 GL--NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 246 ~~--~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
.. +.||.|++|+++. ....++..+.++| +|||+||+.++.+.
T Consensus 143 ~~~~~~fD~V~~d~~~~-------------------------~~~~~l~~~~~~L----kpgG~lv~~~~~~~ 186 (232)
T 3cbg_A 143 GKPLPEFDLIFIDADKR-------------------------NYPRYYEIGLNLL----RRGGLMVIDNVLWH 186 (232)
T ss_dssp SSSCCCEEEEEECSCGG-------------------------GHHHHHHHHHHTE----EEEEEEEEECTTGG
T ss_pred cCCCCCcCEEEECCCHH-------------------------HHHHHHHHHHHHc----CCCeEEEEeCCCcC
Confidence 11 6799999997620 1134577777776 99999999988764
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-11 Score=121.97 Aligned_cols=117 Identities=11% Similarity=0.074 Sum_probs=93.1
Q ss_pred HHHhcC-CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCC
Q 010971 170 PVMALA-PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 170 ~v~~L~-~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~ 247 (496)
....+. +.++.+|||+|||+|..+..++... ...|+++|+++..++.+++++...|+. ++.+...|+..++ +..
T Consensus 108 l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~ 183 (312)
T 3vc1_A 108 LMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP--FDK 183 (312)
T ss_dssp HHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--CCT
T ss_pred HHHHhccCCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC--CCC
Confidence 344555 7889999999999999999999876 368999999999999999999999987 6999999998876 334
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
+.||+|++.- ++. ... +..+|..+.++| +|||+|++++.....
T Consensus 184 ~~fD~V~~~~------~l~-------~~~----------~~~~l~~~~~~L----kpgG~l~~~~~~~~~ 226 (312)
T 3vc1_A 184 GAVTASWNNE------STM-------YVD----------LHDLFSEHSRFL----KVGGRYVTITGCWNP 226 (312)
T ss_dssp TCEEEEEEES------CGG-------GSC----------HHHHHHHHHHHE----EEEEEEEEEEEEECT
T ss_pred CCEeEEEECC------chh-------hCC----------HHHHHHHHHHHc----CCCcEEEEEEccccc
Confidence 7899999721 111 011 355788888876 999999998865443
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.8e-11 Score=111.55 Aligned_cols=126 Identities=17% Similarity=0.156 Sum_probs=90.3
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc-----------
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK----------- 243 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~----------- 243 (496)
+.++.+|||+|||||+.|.+++..+++ .+.|+|+|+++. ....++.++..|+...+.
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~-----------~~~~~v~~~~~d~~~~~~~~~~~~~~i~~ 88 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM-----------DPIPNVYFIQGEIGKDNMNNIKNINYIDN 88 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC-----------CCCTTCEEEECCTTTTSSCCC--------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc-----------CCCCCceEEEccccchhhhhhcccccccc
Confidence 468899999999999999999998863 589999999983 134578888999877640
Q ss_pred ------------ccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 244 ------------VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 244 ------------~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.+....||+|++|.++...|.. ..+......++..+|..+.++| +|||.|+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~-----------~~d~~~~~~~~~~~l~~~~~~L----kpgG~lv~~ 153 (201)
T 2plw_A 89 MNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNK-----------IDDHLNSCELTLSITHFMEQYI----NIGGTYIVK 153 (201)
T ss_dssp ---CHHHHHHHHHHTTCCEEEEEECCCCCCCSCH-----------HHHHHHHHHHHHHHHHHHHHHE----EEEEEEEEE
T ss_pred ccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCc-----------ccCHHHHHHHHHHHHHHHHHHc----cCCCEEEEE
Confidence 0234689999999876544421 1223333455677888888886 999999986
Q ss_pred eCCCCCcCCHHHHHHHHHh
Q 010971 312 TCSIMVTENEAVIDYALKK 330 (496)
Q Consensus 312 TCSi~~eENE~vV~~~L~~ 330 (496)
+.. .++...+...+..
T Consensus 154 ~~~---~~~~~~l~~~l~~ 169 (201)
T 2plw_A 154 MYL---GSQTNNLKTYLKG 169 (201)
T ss_dssp EEC---STTHHHHHHHHHT
T ss_pred EeC---CCCHHHHHHHHHH
Confidence 543 3455555555554
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-11 Score=122.54 Aligned_cols=92 Identities=16% Similarity=0.235 Sum_probs=78.5
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~ 248 (496)
.....+.+++|.+|||+|||+|..+.+++......+.|+++|+++..++.+++++...|+.++.+...|+...+.. .+
T Consensus 66 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~--~~ 143 (317)
T 1dl5_A 66 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE--FS 143 (317)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG--GC
T ss_pred HHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcccc--CC
Confidence 4455678889999999999999999999998764578999999999999999999999999999999998775432 26
Q ss_pred CcCEEEECCCCCCC
Q 010971 249 TVDRVLLDAPCSGT 262 (496)
Q Consensus 249 ~fD~VLlDaPCSg~ 262 (496)
.||+|++++++...
T Consensus 144 ~fD~Iv~~~~~~~~ 157 (317)
T 1dl5_A 144 PYDVIFVTVGVDEV 157 (317)
T ss_dssp CEEEEEECSBBSCC
T ss_pred CeEEEEEcCCHHHH
Confidence 89999999886543
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.25 E-value=9.3e-11 Score=113.55 Aligned_cols=148 Identities=14% Similarity=0.105 Sum_probs=96.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCC-CccccC---CCCcCE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNE-LPKVLG---LNTVDR 252 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~-~~~~~~---~~~fD~ 252 (496)
++.+|||+|||+|..+..++...++ +.|+++|+++..++.+++|+..+|+.+ +.+++.|+.. +...+. ...||+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNG-WYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 5789999999999999999987643 799999999999999999999999976 9999999765 222222 157999
Q ss_pred EEECCCCCCCCc-cc----C-----CchhhccCC------HHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 253 VLLDAPCSGTGV-IS----K-----DESVKTSKS------LEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 253 VLlDaPCSg~G~-i~----r-----~p~~k~~~s------~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
|++|||+...+. +. + .|...+... +... + .....++..+..++ +++|.++. .+.
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~--l-~~~~~~~~~~~~~l----~~~g~~~~---~~~ 213 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGE--L-EFVKRIIHDSLQLK----KRLRWYSC---MLG 213 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTH--H-HHHHHHHHHHHHHG----GGBSCEEE---EES
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCE--E-EEEHHHHHHHHhcc----cceEEEEE---CCC
Confidence 999999987651 10 1 111111000 0111 1 12234566666665 88886643 333
Q ss_pred CcCCHHHHHHHHHhCCcEEe
Q 010971 317 VTENEAVIDYALKKRDVKLV 336 (496)
Q Consensus 317 ~eENE~vV~~~L~~~~~~lv 336 (496)
...+...+..++++.++..+
T Consensus 214 ~~~~~~~~~~~l~~~Gf~~v 233 (254)
T 2h00_A 214 KKCSLAPLKEELRIQGVPKV 233 (254)
T ss_dssp STTSHHHHHHHHHHTTCSEE
T ss_pred ChhHHHHHHHHHHHcCCCce
Confidence 44554556667777665443
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.24 E-value=8.7e-11 Score=113.82 Aligned_cols=132 Identities=16% Similarity=0.165 Sum_probs=94.6
Q ss_pred CcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeE
Q 010971 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231 (496)
Q Consensus 152 ~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv 231 (496)
.+.|.......|.......+..+.+.++.+|||+|||+|..+..++... +.|+++|+|+.+++.+++++...|+.++
T Consensus 11 ~~~~~~s~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~v 87 (260)
T 1vl5_A 11 HHMYVTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQV 87 (260)
T ss_dssp ------------CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCSE
T ss_pred ceeeecCccccCHHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCCce
Confidence 4567667777777776677777888899999999999999999888764 4899999999999999999999999899
Q ss_pred EEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 232 IVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 232 ~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.++..|+..++ +..+.||+|++... +. +-.. ...+|..+.++| +|||+|+.+
T Consensus 88 ~~~~~d~~~l~--~~~~~fD~V~~~~~------l~------~~~d----------~~~~l~~~~r~L----kpgG~l~~~ 139 (260)
T 1vl5_A 88 EYVQGDAEQMP--FTDERFHIVTCRIA------AH------HFPN----------PASFVSEAYRVL----KKGGQLLLV 139 (260)
T ss_dssp EEEECCC-CCC--SCTTCEEEEEEESC------GG------GCSC----------HHHHHHHHHHHE----EEEEEEEEE
T ss_pred EEEEecHHhCC--CCCCCEEEEEEhhh------hH------hcCC----------HHHHHHHHHHHc----CCCCEEEEE
Confidence 99999998876 34478999997421 11 1011 124677777776 999999987
Q ss_pred eCC
Q 010971 312 TCS 314 (496)
Q Consensus 312 TCS 314 (496)
+..
T Consensus 140 ~~~ 142 (260)
T 1vl5_A 140 DNS 142 (260)
T ss_dssp EEE
T ss_pred EcC
Confidence 543
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.2e-11 Score=121.52 Aligned_cols=106 Identities=15% Similarity=0.107 Sum_probs=86.0
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
++.+++|++|||+|||||+.|..+++... .+.|+++|+++.+++.+++++.+.|+.++.++.+|+..++ .+.||+
T Consensus 117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~-ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~----d~~FDv 191 (298)
T 3fpf_A 117 LGRFRRGERAVFIGGGPLPLTGILLSHVY-GMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID----GLEFDV 191 (298)
T ss_dssp HTTCCTTCEEEEECCCSSCHHHHHHHHTT-CCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG----GCCCSE
T ss_pred HcCCCCcCEEEEECCCccHHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC----CCCcCE
Confidence 56788999999999999998865544433 4799999999999999999999999988999999998875 278999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
|++++- . + -..+++..+.+.| +|||+||..+
T Consensus 192 V~~~a~------~---~----------------d~~~~l~el~r~L----kPGG~Lvv~~ 222 (298)
T 3fpf_A 192 LMVAAL------A---E----------------PKRRVFRNIHRYV----DTETRIIYRT 222 (298)
T ss_dssp EEECTT------C---S----------------CHHHHHHHHHHHC----CTTCEEEEEE
T ss_pred EEECCC------c---c----------------CHHHHHHHHHHHc----CCCcEEEEEc
Confidence 998542 0 1 1234677777775 9999999865
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.5e-11 Score=110.95 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=84.7
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCcccc--CCCCcCE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL--GLNTVDR 252 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~--~~~~fD~ 252 (496)
..++.+|||+|||+|..+..++.. +...|+++|+++..++.++.|+...++. ++.+++.|+..+...+ ....||+
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~ 119 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDL 119 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hcCCCCEEEeCCccCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCE
Confidence 357899999999999999988773 3469999999999999999999999984 6999999987643211 1368999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
|++|+|.. .+ ....+ .. .+. +.++ |+|||+|++++|+-..
T Consensus 120 i~~~~~~~-~~------------~~~~~------~~-~l~-~~~~----L~~gG~l~~~~~~~~~ 159 (187)
T 2fhp_A 120 VLLDPPYA-KQ------------EIVSQ------LE-KML-ERQL----LTNEAVIVCETDKTVK 159 (187)
T ss_dssp EEECCCGG-GC------------CHHHH------HH-HHH-HTTC----EEEEEEEEEEEETTCC
T ss_pred EEECCCCC-ch------------hHHHH------HH-HHH-Hhcc----cCCCCEEEEEeCCccc
Confidence 99999832 10 11111 01 111 2444 4999999999988643
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-11 Score=126.65 Aligned_cols=144 Identities=16% Similarity=0.167 Sum_probs=100.9
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCC----cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNT----GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~----g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
.+.++.+|||+|||+|+.++.++..++.. ..|+|+|+++..++.++.|+...|+ ++.+.++|+.... ....|
T Consensus 127 ~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~---~~~~f 202 (344)
T 2f8l_A 127 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANL---LVDPV 202 (344)
T ss_dssp TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCC---CCCCE
T ss_pred CCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCcc---ccCCc
Confidence 56678999999999999999999887543 6899999999999999999999998 6788899986532 23689
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC-CCCCcCCHHHHHHHHH
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC-SIMVTENEAVIDYALK 329 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC-Si~~eENE~vV~~~L~ 329 (496)
|+|++|||+ |.+.. ++....+...........+..++.++++.| +|||++++.++ +++.......+...|.
T Consensus 203 D~Ii~NPPf---g~~~~-~~~~~~~~~~~~~g~~~~~~~~l~~~~~~L----k~gG~~~~v~p~~~~~~~~~~~ir~~l~ 274 (344)
T 2f8l_A 203 DVVISDLPV---GYYPD-DENAKTFELCREEGHSFAHFLFIEQGMRYT----KPGGYLFFLVPDAMFGTSDFAKVDKFIK 274 (344)
T ss_dssp EEEEEECCC---SEESC-HHHHTTSTTCCSSSCEEHHHHHHHHHHHTE----EEEEEEEEEEEGGGGGSTTHHHHHHHHH
T ss_pred cEEEECCCC---CCcCc-hhhhhhccccCCCCcchHHHHHHHHHHHHh----CCCCEEEEEECchhcCCchHHHHHHHHH
Confidence 999999997 33321 111111110000011224556788999887 99999988873 3444444555554444
Q ss_pred h
Q 010971 330 K 330 (496)
Q Consensus 330 ~ 330 (496)
+
T Consensus 275 ~ 275 (344)
T 2f8l_A 275 K 275 (344)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-11 Score=119.01 Aligned_cols=117 Identities=16% Similarity=0.251 Sum_probs=88.5
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc--------CCCeEEEEecCCCC-CccccCC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--------GVTNTIVCNYDGNE-LPKVLGL 247 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~--------g~~nv~v~~~D~~~-~~~~~~~ 247 (496)
.++.+|||+|||+|+.+..++...+ .+.|+|+|+++..+..+++++..+ |+.|+.++..|+.. ++..+..
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 4788999999999999999998864 468999999999999999999987 88899999999987 4544445
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+.||.|++.-|..-. +.. .....+ .+..+|..+.++| +|||+|+++|
T Consensus 127 ~~~d~v~~~~p~p~~---------k~~---~~~~r~--~~~~~l~~~~~~L----kpgG~l~~~t 173 (246)
T 2vdv_E 127 GQLSKMFFCFPDPHF---------KQR---KHKARI--ITNTLLSEYAYVL----KEGGVVYTIT 173 (246)
T ss_dssp TCEEEEEEESCCCC------------------CSSC--CCHHHHHHHHHHE----EEEEEEEEEE
T ss_pred cccCEEEEECCCccc---------ccc---hhHHhh--ccHHHHHHHHHHc----CCCCEEEEEe
Confidence 789999876553211 000 000000 1356788888886 9999999865
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-11 Score=112.07 Aligned_cols=128 Identities=19% Similarity=0.290 Sum_probs=97.5
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~ 247 (496)
+....+.+.++.+|||+|||+|..+..++... +.|+++|+++..++.+++++..+|+ .++.+.+.|+...... .
T Consensus 24 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~ 98 (192)
T 1l3i_A 24 LIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK--I 98 (192)
T ss_dssp HHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT--S
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhccc--C
Confidence 44455678899999999999999999888764 7899999999999999999999998 6788998887652111 1
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHH
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~ 327 (496)
..||+|+++.+.. + ...+|..+.++| +|||+|++++|+. ++...+..+
T Consensus 99 ~~~D~v~~~~~~~------------------~-------~~~~l~~~~~~l----~~gG~l~~~~~~~---~~~~~~~~~ 146 (192)
T 1l3i_A 99 PDIDIAVVGGSGG------------------E-------LQEILRIIKDKL----KPGGRIIVTAILL---ETKFEAMEC 146 (192)
T ss_dssp CCEEEEEESCCTT------------------C-------HHHHHHHHHHTE----EEEEEEEEEECBH---HHHHHHHHH
T ss_pred CCCCEEEECCchH------------------H-------HHHHHHHHHHhc----CCCcEEEEEecCc---chHHHHHHH
Confidence 5799999986631 0 134677777776 9999999998864 233344455
Q ss_pred HHhCCc
Q 010971 328 LKKRDV 333 (496)
Q Consensus 328 L~~~~~ 333 (496)
+.+.++
T Consensus 147 l~~~g~ 152 (192)
T 1l3i_A 147 LRDLGF 152 (192)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 666554
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.4e-11 Score=115.92 Aligned_cols=110 Identities=18% Similarity=0.199 Sum_probs=86.5
Q ss_pred HHhc--CCCCCCeEeeccCCCchHHHHHHHHcCC-----CcEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEecCC
Q 010971 171 VMAL--APQEKERVIDMAAAPGGKTTYIAALMKN-----TGLIYANEMKASRLKSLTANLHRMG-----VTNTIVCNYDG 238 (496)
Q Consensus 171 v~~L--~~~~g~~VLDmcAgpGgKT~~lA~l~~~-----~g~V~A~D~s~~rl~~l~~nl~r~g-----~~nv~v~~~D~ 238 (496)
..+| .+.++.+|||+|||+|..+.+++..++. .+.|+++|+++..++.+++++.+.| ..++.+...|+
T Consensus 75 ~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 154 (227)
T 1r18_A 75 LEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG 154 (227)
T ss_dssp HHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCG
T ss_pred HHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCc
Confidence 4444 4788999999999999999999998753 3699999999999999999999887 67899999998
Q ss_pred CCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 239 NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 239 ~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
..... ....||+|++++++... +..+.+.| +|||+||.+...
T Consensus 155 ~~~~~--~~~~fD~I~~~~~~~~~----------------------------~~~~~~~L----kpgG~lvi~~~~ 196 (227)
T 1r18_A 155 RKGYP--PNAPYNAIHVGAAAPDT----------------------------PTELINQL----ASGGRLIVPVGP 196 (227)
T ss_dssp GGCCG--GGCSEEEEEECSCBSSC----------------------------CHHHHHTE----EEEEEEEEEESC
T ss_pred ccCCC--cCCCccEEEECCchHHH----------------------------HHHHHHHh----cCCCEEEEEEec
Confidence 76211 12679999999875321 23445555 999999987643
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.22 E-value=9e-11 Score=112.96 Aligned_cols=115 Identities=12% Similarity=0.011 Sum_probs=90.1
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~ 249 (496)
...+.+.++.+|||+|||+|..+..++... ...|+++|+++..++.+++++...|+. ++.+...|+..++. .+.
T Consensus 29 ~~~~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~ 103 (256)
T 1nkv_A 29 GRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA---NEK 103 (256)
T ss_dssp HHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC---SSC
T ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc---CCC
Confidence 445677899999999999999999999886 358999999999999999999999985 79999999988763 378
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
||+|++- +++..-++ ...+|..+.++| +|||+|+.++..+.
T Consensus 104 fD~V~~~------~~~~~~~~----------------~~~~l~~~~r~L----kpgG~l~~~~~~~~ 144 (256)
T 1nkv_A 104 CDVAACV------GATWIAGG----------------FAGAEELLAQSL----KPGGIMLIGEPYWR 144 (256)
T ss_dssp EEEEEEE------SCGGGTSS----------------SHHHHHHHTTSE----EEEEEEEEEEEEET
T ss_pred CCEEEEC------CChHhcCC----------------HHHHHHHHHHHc----CCCeEEEEecCccc
Confidence 9999972 12211111 134566766665 99999999876543
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=8.9e-12 Score=119.55 Aligned_cols=118 Identities=19% Similarity=0.145 Sum_probs=89.8
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC-ccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~-~~~~~~~~fD~VLl 255 (496)
.++.+|||+|||+|..+..+|...++ ..|+|+|+++.++..++.++.+.|+.|+.++.+|+..+ +..+..+.||.|++
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~p~-~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~ 111 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDRPE-QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQL 111 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEE
T ss_pred CCCCeEEEEeeeChHHHHHHHHHCCC-CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEE
Confidence 46889999999999999999998653 68999999999999999999999999999999998874 33345589999999
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
.-|.. +.+....+.+. .|..+|..+.+.| +|||+|+++|-
T Consensus 112 ~~~~p----~~~~~~~~rr~----------~~~~~l~~~~r~L----kpGG~l~i~td 151 (218)
T 3dxy_A 112 FFPDP----WHKARHNKRRI----------VQVPFAELVKSKL----QLGGVFHMATD 151 (218)
T ss_dssp ESCCC----CCSGGGGGGSS----------CSHHHHHHHHHHE----EEEEEEEEEES
T ss_pred eCCCC----ccchhhhhhhh----------hhHHHHHHHHHHc----CCCcEEEEEeC
Confidence 74321 11111111111 1234677777776 99999998874
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.22 E-value=6.8e-11 Score=119.87 Aligned_cols=113 Identities=14% Similarity=0.156 Sum_probs=87.2
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC-----------CCeEEEEecC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-----------VTNTIVCNYD 237 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g-----------~~nv~v~~~D 237 (496)
.....+++.+|.+|||+|||+|..+..++..++..+.|+++|+++.+++.+++|+..+| ..++.+...|
T Consensus 96 ~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d 175 (336)
T 2b25_A 96 MILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD 175 (336)
T ss_dssp HHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECC
Confidence 34556688899999999999999999999987666899999999999999999999764 3579999999
Q ss_pred CCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 238 GNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 238 ~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+..+...+..+.||+|++|+|... .+|..+.++| +|||+|+..+
T Consensus 176 ~~~~~~~~~~~~fD~V~~~~~~~~---------------------------~~l~~~~~~L----kpgG~lv~~~ 219 (336)
T 2b25_A 176 ISGATEDIKSLTFDAVALDMLNPH---------------------------VTLPVFYPHL----KHGGVCAVYV 219 (336)
T ss_dssp TTCCC-------EEEEEECSSSTT---------------------------TTHHHHGGGE----EEEEEEEEEE
T ss_pred hHHcccccCCCCeeEEEECCCCHH---------------------------HHHHHHHHhc----CCCcEEEEEe
Confidence 987642233467999999987321 1466667765 9999998544
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.5e-11 Score=122.36 Aligned_cols=124 Identities=9% Similarity=0.018 Sum_probs=95.0
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC---eEEEEecCCCCCcccc
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT---NTIVCNYDGNELPKVL 245 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~---nv~v~~~D~~~~~~~~ 245 (496)
+....+.+.++.+|||+|||+|..+..++...+ ...|+++|+|+..++.+++|+..+|+. ++.+...|+... +
T Consensus 213 ~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p-~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~---~ 288 (375)
T 4dcm_A 213 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG---V 288 (375)
T ss_dssp HHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT---C
T ss_pred HHHHhCcccCCCeEEEEeCcchHHHHHHHHHCC-CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc---C
Confidence 455667777889999999999999999999864 479999999999999999999999976 488899998763 2
Q ss_pred CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 246 ~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
..+.||.|++|||......+.. ....++|..+.+.| +|||+|+++.-+..+
T Consensus 289 ~~~~fD~Ii~nppfh~~~~~~~-----------------~~~~~~l~~~~~~L----kpgG~l~iv~n~~~~ 339 (375)
T 4dcm_A 289 EPFRFNAVLCNPPFHQQHALTD-----------------NVAWEMFHHARRCL----KINGELYIVANRHLD 339 (375)
T ss_dssp CTTCEEEEEECCCC-------C-----------------CHHHHHHHHHHHHE----EEEEEEEEEEETTSC
T ss_pred CCCCeeEEEECCCcccCcccCH-----------------HHHHHHHHHHHHhC----CCCcEEEEEEECCcC
Confidence 3468999999999643211110 11235788888876 999999997666544
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-10 Score=112.70 Aligned_cols=126 Identities=12% Similarity=0.148 Sum_probs=98.8
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCC-CccccCCCCcCEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNE-LPKVLGLNTVDRV 253 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~-~~~~~~~~~fD~V 253 (496)
+.+|.+|||+|||+|..++.++... +.+.|+|+|+++..++.+++|++++|+.+ |.+..+|+.. ++. ...||.|
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~---~~~~D~I 88 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERG-QIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE---TDQVSVI 88 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG---GGCCCEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc---CcCCCEE
Confidence 4678999999999999999988863 34789999999999999999999999985 9999999853 221 1269998
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCc
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDV 333 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~ 333 (496)
++ .|.| ..+-.+||..+...+ ++||+||.+.- .....|..+|..++|
T Consensus 89 vi----aG~G--------------------g~~i~~Il~~~~~~L----~~~~~lVlq~~-----~~~~~vr~~L~~~Gf 135 (225)
T 3kr9_A 89 TI----AGMG--------------------GRLIARILEEGLGKL----ANVERLILQPN-----NREDDLRIWLQDHGF 135 (225)
T ss_dssp EE----EEEC--------------------HHHHHHHHHHTGGGC----TTCCEEEEEES-----SCHHHHHHHHHHTTE
T ss_pred EE----cCCC--------------------hHHHHHHHHHHHHHh----CCCCEEEEECC-----CCHHHHHHHHHHCCC
Confidence 86 2333 122355777777765 99999999665 367788888888888
Q ss_pred EEeec
Q 010971 334 KLVPC 338 (496)
Q Consensus 334 ~lv~~ 338 (496)
.++..
T Consensus 136 ~i~~e 140 (225)
T 3kr9_A 136 QIVAE 140 (225)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87764
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.21 E-value=3.6e-11 Score=116.48 Aligned_cols=123 Identities=16% Similarity=0.109 Sum_probs=90.6
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHc---CCCe---------------------
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRM---GVTN--------------------- 230 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~-~~~g~V~A~D~s~~rl~~l~~nl~r~---g~~n--------------------- 230 (496)
..++.+|||+|||+|..+..++..+ .....|+|+|+|+..++.++.|+... |+.+
T Consensus 49 ~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (250)
T 1o9g_A 49 GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAA 128 (250)
T ss_dssp CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhh
Confidence 3467899999999999999999873 12368999999999999999999877 6543
Q ss_pred -----EE-------------EEecCCCCCccc---cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHH
Q 010971 231 -----TI-------------VCNYDGNELPKV---LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQ 289 (496)
Q Consensus 231 -----v~-------------v~~~D~~~~~~~---~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~ 289 (496)
+. +.+.|....... .....||+|++++|+.....+..+ .....+..
T Consensus 129 ~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~-------------~~~~~~~~ 195 (250)
T 1o9g_A 129 QAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQ-------------VPGQPVAG 195 (250)
T ss_dssp HHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSC-------------CCHHHHHH
T ss_pred hhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeecccccccc-------------ccccHHHH
Confidence 55 888998764310 022489999999997544332210 11234566
Q ss_pred HHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 290 LILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 290 LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
++..+.++| +|||+|+++.++.
T Consensus 196 ~l~~~~~~L----kpgG~l~~~~~~~ 217 (250)
T 1o9g_A 196 LLRSLASAL----PAHAVIAVTDRSR 217 (250)
T ss_dssp HHHHHHHHS----CTTCEEEEEESSS
T ss_pred HHHHHHHhc----CCCcEEEEeCcch
Confidence 788888876 9999999976664
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.7e-11 Score=113.23 Aligned_cols=109 Identities=22% Similarity=0.307 Sum_probs=85.4
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc-ccCCCCcCE
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK-VLGLNTVDR 252 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~-~~~~~~fD~ 252 (496)
+.+.++.+|||+|||+|..+.++++..++.+.|+++|+++..+..+.+++.+. .++.++..|+..... ....+.||+
T Consensus 73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~~D~ 150 (233)
T 2ipx_A 73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRMLIAMVDV 150 (233)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGGGGGGCCCEEE
T ss_pred ecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhhhcccCCcEEE
Confidence 34678999999999999999999998865689999999999999888888876 678999999987421 112368999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
|++|+| .|+ ....++..+.++| +|||+|+.+.
T Consensus 151 V~~~~~---------~~~---------------~~~~~~~~~~~~L----kpgG~l~i~~ 182 (233)
T 2ipx_A 151 IFADVA---------QPD---------------QTRIVALNAHTFL----RNGGHFVISI 182 (233)
T ss_dssp EEECCC---------CTT---------------HHHHHHHHHHHHE----EEEEEEEEEE
T ss_pred EEEcCC---------Ccc---------------HHHHHHHHHHHHc----CCCeEEEEEE
Confidence 999987 111 1133566677776 9999998853
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.6e-11 Score=109.71 Aligned_cols=111 Identities=17% Similarity=0.142 Sum_probs=85.1
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
..++.+|||+|||+|..+..++.. +.+.|+++|+++..++.+++|+...|+. ++.++..|+..+.... ...||+|+
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~fD~i~ 105 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL-TGRFDLVF 105 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB-CSCEEEEE
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh-cCCCCEEE
Confidence 567899999999999999988876 3469999999999999999999999986 6999999987642222 25799999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHH--HhhhhcCCCCcEEEEEeCCCC
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAI--DMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~--~~l~~~lkpGG~LVYSTCSi~ 316 (496)
+|+|+.. .. ..+++.... ++ |+|||+|++++++-.
T Consensus 106 ~~~~~~~----------------~~-------~~~~~~~l~~~~~----L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 106 LDPPYAK----------------ET-------IVATIEALAAKNL----LSEQVMVVCETDKTV 142 (177)
T ss_dssp ECCSSHH----------------HH-------HHHHHHHHHHTTC----EEEEEEEEEEEETTC
T ss_pred ECCCCCc----------------ch-------HHHHHHHHHhCCC----cCCCcEEEEEECCcc
Confidence 9998420 00 112233332 44 599999999888764
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.20 E-value=9.7e-11 Score=111.37 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=85.4
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc-CCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-GLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~-~~~~fD~VL 254 (496)
+.+|.+|||+|||+|..+.+++..++..+.|+++|+++.+++.+.+++... .++.++..|+....... ....||+|+
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~D~v~ 148 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRALVPKVDVIF 148 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchhhcccCCceEEE
Confidence 678999999999999999999998865689999999999999999999876 68999999998742111 125799999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
+|+| .|+ ....++..+.++| +|||+|+++.+
T Consensus 149 ~~~~---------~~~---------------~~~~~l~~~~~~L----kpgG~l~~~~~ 179 (227)
T 1g8a_A 149 EDVA---------QPT---------------QAKILIDNAEVYL----KRGGYGMIAVK 179 (227)
T ss_dssp ECCC---------STT---------------HHHHHHHHHHHHE----EEEEEEEEEEE
T ss_pred ECCC---------CHh---------------HHHHHHHHHHHhc----CCCCEEEEEEe
Confidence 9987 111 1123477777776 99999998743
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=5e-12 Score=120.14 Aligned_cols=115 Identities=12% Similarity=0.059 Sum_probs=90.6
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccC-C--
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLG-L-- 247 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~-~-- 247 (496)
.++...++.+|||+|||+|..+..++..+++.+.|+++|+++.+++.+++++...|+ .++.++.+|+......+. .
T Consensus 63 ~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~ 142 (229)
T 2avd_A 63 NLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGE 142 (229)
T ss_dssp HHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTC
T ss_pred HHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCC
Confidence 334445788999999999999999999877568999999999999999999999998 469999999865421111 1
Q ss_pred -CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 248 -NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 248 -~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
+.||.|++|+|.. .+..++..+.++| +|||+|++..+.+
T Consensus 143 ~~~~D~v~~d~~~~-------------------------~~~~~l~~~~~~L----~pgG~lv~~~~~~ 182 (229)
T 2avd_A 143 AGTFDVAVVDADKE-------------------------NCSAYYERCLQLL----RPGGILAVLRVLW 182 (229)
T ss_dssp TTCEEEEEECSCST-------------------------THHHHHHHHHHHE----EEEEEEEEECCSG
T ss_pred CCCccEEEECCCHH-------------------------HHHHHHHHHHHHc----CCCeEEEEECCCc
Confidence 5799999998711 1234577777776 9999999987653
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-10 Score=111.83 Aligned_cols=103 Identities=21% Similarity=0.294 Sum_probs=83.1
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCC----CccccCCCCc
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE----LPKVLGLNTV 250 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~----~~~~~~~~~f 250 (496)
.+.++.+|||+|||+|..+.+++...+ .+.|+++|+++.+++.+++++... .|+.++..|+.. ++ +. ..|
T Consensus 71 ~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~--~~-~~~ 144 (230)
T 1fbn_A 71 PIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYAN--IV-EKV 144 (230)
T ss_dssp CCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTT--TS-CCE
T ss_pred CCCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCcccccc--cC-ccE
Confidence 466899999999999999999999876 589999999999999999998766 689999999987 33 22 679
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
|+|+.|.|-. + ....+|..+.++| +|||+|+.+
T Consensus 145 D~v~~~~~~~---------~---------------~~~~~l~~~~~~L----kpgG~l~i~ 177 (230)
T 1fbn_A 145 DVIYEDVAQP---------N---------------QAEILIKNAKWFL----KKGGYGMIA 177 (230)
T ss_dssp EEEEECCCST---------T---------------HHHHHHHHHHHHE----EEEEEEEEE
T ss_pred EEEEEecCCh---------h---------------HHHHHHHHHHHhC----CCCcEEEEE
Confidence 9999876511 0 1133577777776 999999886
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-10 Score=109.28 Aligned_cols=112 Identities=20% Similarity=0.227 Sum_probs=88.6
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~ 248 (496)
.....+.+.++.+|||+|||+|..+..++...+..+.|+++|+++.+++.+++++...|+.++.+...|+..... ..+
T Consensus 68 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~ 145 (215)
T 2yxe_A 68 MMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE--PLA 145 (215)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG--GGC
T ss_pred HHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--CCC
Confidence 445556788999999999999999999999885557999999999999999999999999899999999754321 136
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.||+|+++.++... ...+.++| +|||+|+.++.+
T Consensus 146 ~fD~v~~~~~~~~~----------------------------~~~~~~~L----~pgG~lv~~~~~ 179 (215)
T 2yxe_A 146 PYDRIYTTAAGPKI----------------------------PEPLIRQL----KDGGKLLMPVGR 179 (215)
T ss_dssp CEEEEEESSBBSSC----------------------------CHHHHHTE----EEEEEEEEEESS
T ss_pred CeeEEEECCchHHH----------------------------HHHHHHHc----CCCcEEEEEECC
Confidence 89999998664311 02444555 999999987644
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-11 Score=123.73 Aligned_cols=130 Identities=16% Similarity=0.110 Sum_probs=95.0
Q ss_pred cEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCC
Q 010971 159 FYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG 238 (496)
Q Consensus 159 ~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~ 238 (496)
+|..+.......+..+.+.++.+|||+|||+|..|..++.. .+.|+|+|+++..++.+++++...|+.++.++++|+
T Consensus 23 ~fl~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~ 99 (299)
T 2h1r_A 23 HLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDA 99 (299)
T ss_dssp CEECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----C
T ss_pred ceecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECch
Confidence 45555555556667788889999999999999999988875 368999999999999999999998988899999999
Q ss_pred CCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHH-----------HHHHHHHHHHHhhhhcCCCCcE
Q 010971 239 NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY-----------LQKQLILAAIDMVDANSKSGGY 307 (496)
Q Consensus 239 ~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~-----------lQ~~LL~~A~~~l~~~lkpGG~ 307 (496)
..++ . ..||+|++|+|+..+. ..+..+.. .|+ ..|.+++ +++|.
T Consensus 100 ~~~~--~--~~~D~Vv~n~py~~~~--------------~~~~~ll~~~~~~~~~~l~~Q~---e~a~rll----a~~G~ 154 (299)
T 2h1r_A 100 IKTV--F--PKFDVCTANIPYKISS--------------PLIFKLISHRPLFKCAVLMFQK---EFAERML----ANVGD 154 (299)
T ss_dssp CSSC--C--CCCSEEEEECCGGGHH--------------HHHHHHHHCSSCCSEEEEEEEH---HHHHHHT----CCTTS
T ss_pred hhCC--c--ccCCEEEEcCCccccc--------------HHHHHHHhcCCccceeeehHHH---HHHHHHh----cCCCC
Confidence 8775 2 5799999999965321 11111110 011 3355555 89999
Q ss_pred EEEEeCCCC
Q 010971 308 IVYSTCSIM 316 (496)
Q Consensus 308 LVYSTCSi~ 316 (496)
..|+|||+.
T Consensus 155 ~~y~~ls~~ 163 (299)
T 2h1r_A 155 SNYSRLTIN 163 (299)
T ss_dssp TTCCHHHHH
T ss_pred cchhHHHHH
Confidence 999998874
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.1e-10 Score=110.44 Aligned_cols=127 Identities=17% Similarity=0.203 Sum_probs=100.1
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
+.+|.+|||+|||+|..++.++... ..+.|+|+|+++..++.+++|++++|+.+ +.+..+|+...... ...||.|+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~--~~~~D~Iv 95 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMG-YCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE--ADNIDTIT 95 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTT-CEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG--GGCCCEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc--ccccCEEE
Confidence 5679999999999999999988763 34689999999999999999999999976 99999998765421 13799987
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcE
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVK 334 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~ 334 (496)
+ .|.| ..+-.+||..+...+ +++|+||.+.- .+...|..+|..++|.
T Consensus 96 i----aGmG--------------------g~lI~~IL~~~~~~l----~~~~~lIlqp~-----~~~~~lr~~L~~~Gf~ 142 (230)
T 3lec_A 96 I----CGMG--------------------GRLIADILNNDIDKL----QHVKTLVLQPN-----NREDDLRKWLAANDFE 142 (230)
T ss_dssp E----EEEC--------------------HHHHHHHHHHTGGGG----TTCCEEEEEES-----SCHHHHHHHHHHTTEE
T ss_pred E----eCCc--------------------hHHHHHHHHHHHHHh----CcCCEEEEECC-----CChHHHHHHHHHCCCE
Confidence 6 2333 123345677776665 99999998763 3578888888888888
Q ss_pred Eeec
Q 010971 335 LVPC 338 (496)
Q Consensus 335 lv~~ 338 (496)
++..
T Consensus 143 i~~E 146 (230)
T 3lec_A 143 IVAE 146 (230)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.8e-11 Score=111.21 Aligned_cols=113 Identities=15% Similarity=0.090 Sum_probs=88.2
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCc
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~f 250 (496)
..+.+.++ +|||+|||+|..+..++.. ....|+++|+++..++.++.++...|+. ++.+...|+..++ +..+.|
T Consensus 38 ~~~~~~~~-~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~ 112 (219)
T 3dlc_A 38 NRFGITAG-TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP--IEDNYA 112 (219)
T ss_dssp HHHCCCEE-EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS--SCTTCE
T ss_pred HhcCCCCC-EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC--CCcccc
Confidence 34455666 9999999999999999987 3369999999999999999999999986 6999999998876 334789
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
|+|++..... .-+ ....+|..+.++| +|||+|++++...
T Consensus 113 D~v~~~~~l~------~~~----------------~~~~~l~~~~~~L----~pgG~l~~~~~~~ 151 (219)
T 3dlc_A 113 DLIVSRGSVF------FWE----------------DVATAFREIYRIL----KSGGKTYIGGGFG 151 (219)
T ss_dssp EEEEEESCGG------GCS----------------CHHHHHHHHHHHE----EEEEEEEEEECCS
T ss_pred cEEEECchHh------hcc----------------CHHHHHHHHHHhC----CCCCEEEEEeccC
Confidence 9999854311 101 1234677777776 9999999986443
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3e-10 Score=112.86 Aligned_cols=123 Identities=11% Similarity=0.071 Sum_probs=92.6
Q ss_pred HHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCC
Q 010971 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~ 248 (496)
....+.+.+|.+|||+|||+|..+..++...+ ..|+++|+|+..++.+++++...|+. ++.+...|+..+ .+
T Consensus 64 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~ 136 (302)
T 3hem_A 64 ALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-----DE 136 (302)
T ss_dssp HHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-----CC
T ss_pred HHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-----CC
Confidence 34556778999999999999999999999864 68999999999999999999999997 699999998765 37
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
.||+|++.. ++..-|+........ ....+|..+.++| +|||+|+..+.+..
T Consensus 137 ~fD~v~~~~------~~~~~~d~~~~~~~~-------~~~~~l~~~~~~L----kpgG~l~i~~~~~~ 187 (302)
T 3hem_A 137 PVDRIVSLG------AFEHFADGAGDAGFE-------RYDTFFKKFYNLT----PDDGRMLLHTITIP 187 (302)
T ss_dssp CCSEEEEES------CGGGTTCCSSCCCTT-------HHHHHHHHHHHSS----CTTCEEEEEEEECC
T ss_pred CccEEEEcc------hHHhcCccccccchh-------HHHHHHHHHHHhc----CCCcEEEEEEEecc
Confidence 899999742 222111110000001 1234677777775 99999999888754
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.17 E-value=4e-10 Score=106.21 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=87.2
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEecCCCCCcccc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-----NTIVCNYDGNELPKVL 245 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-----nv~v~~~D~~~~~~~~ 245 (496)
...+...++.+|||+|||+|..+..++...+ ...|+++|+++..++.+++++...++. ++.++..|+...+..
T Consensus 22 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~- 99 (217)
T 3jwh_A 22 VAALKQSNARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKR- 99 (217)
T ss_dssp HHHHHHTTCCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGG-
T ss_pred HHHHHhcCCCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccccc-
Confidence 3444556789999999999999999988643 369999999999999999999988876 699999998665532
Q ss_pred CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 246 ~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.+.||+|++... +. .....+ ...+|..+.++| +|||.|+.+.+.
T Consensus 100 -~~~fD~v~~~~~------l~-------~~~~~~-------~~~~l~~~~~~L----kpgG~li~~~~~ 143 (217)
T 3jwh_A 100 -FHGYDAATVIEV------IE-------HLDLSR-------LGAFERVLFEFA----QPKIVIVTTPNI 143 (217)
T ss_dssp -GCSCSEEEEESC------GG-------GCCHHH-------HHHHHHHHHTTT----CCSEEEEEEEBH
T ss_pred -CCCcCEEeeHHH------HH-------cCCHHH-------HHHHHHHHHHHc----CCCEEEEEccCc
Confidence 368999997422 11 111111 244677777765 999988877664
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.8e-11 Score=108.86 Aligned_cols=114 Identities=20% Similarity=0.231 Sum_probs=83.0
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCC--------cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEE-ecCCCCCcc---
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNT--------GLIYANEMKASRLKSLTANLHRMGVTNTIVC-NYDGNELPK--- 243 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~--------g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~-~~D~~~~~~--- 243 (496)
+.+|.+|||+|||+|..+.+++..++.. +.|+++|+++. ..+.++.++ ..|....+.
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~-----------~~~~~~~~~~~~d~~~~~~~~~ 88 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI-----------FPLEGATFLCPADVTDPRTSQR 88 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC-----------CCCTTCEEECSCCTTSHHHHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc-----------ccCCCCeEEEeccCCCHHHHHH
Confidence 5689999999999999999999998653 79999999983 234567888 888766431
Q ss_pred ---ccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 244 ---VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 244 ---~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.+....||+|++|.++..+|... .+......++..+|..+.++| +|||+|+.+++..
T Consensus 89 ~~~~~~~~~fD~V~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~L----kpgG~lv~~~~~~ 148 (196)
T 2nyu_A 89 ILEVLPGRRADVILSDMAPNATGFRD-----------LDHDRLISLCLTLLSVTPDIL----QPGGTFLCKTWAG 148 (196)
T ss_dssp HHHHSGGGCEEEEEECCCCCCCSCHH-----------HHHHHHHHHHHHHHHHHHHHE----EEEEEEEEEECCS
T ss_pred HHHhcCCCCCcEEEeCCCCCCCCCcc-----------cCHHHHHHHHHHHHHHHHHHh----cCCCEEEEEecCC
Confidence 12235799999998766555321 112223344567788888886 9999999887643
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=114.89 Aligned_cols=113 Identities=14% Similarity=0.157 Sum_probs=88.0
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
+++|.+|||+|||+|..+..|+...... ..|+|+|+|+.+++.+++++...+.. +|.++++|+..++ + ..||.|
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~--~--~~~d~v 143 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA--I--ENASMV 143 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCC--C--CSEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccc--c--cccccc
Confidence 5789999999999999999999887543 48999999999999999999998875 6999999998876 2 579999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
++.- ++. .....+ ...+|.++.+.| +|||+|+.+.-...
T Consensus 144 ~~~~------~l~-------~~~~~~-------~~~~l~~i~~~L----kpGG~lii~e~~~~ 182 (261)
T 4gek_A 144 VLNF------TLQ-------FLEPSE-------RQALLDKIYQGL----NPGGALVLSEKFSF 182 (261)
T ss_dssp EEES------CGG-------GSCHHH-------HHHHHHHHHHHE----EEEEEEEEEEEBCC
T ss_pred eeee------eee-------ecCchh-------HhHHHHHHHHHc----CCCcEEEEEeccCC
Confidence 8721 110 011111 134677888876 99999999876543
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.15 E-value=5.2e-11 Score=125.92 Aligned_cols=163 Identities=19% Similarity=0.156 Sum_probs=114.3
Q ss_pred cccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcC------------CCcEEEEEeCCHHHHHHHHHHHH
Q 010971 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMK------------NTGLIYANEMKASRLKSLTANLH 224 (496)
Q Consensus 157 ~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~------------~~g~V~A~D~s~~rl~~l~~nl~ 224 (496)
.|.|+--..-+.+.+..+.+.++.+|||.|||+|+..+.++..+. ....|+|+|+++..+..++.|+.
T Consensus 150 ~G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~ 229 (445)
T 2okc_A 150 AGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 229 (445)
T ss_dssp CGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred CCcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH
Confidence 344433223344666778889999999999999999999887752 12579999999999999999999
Q ss_pred HcCCC--eEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCC---chhhccCCHHHHHHHHHHHHHHHHHHHHhhh
Q 010971 225 RMGVT--NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD---ESVKTSKSLEDIQKCSYLQKQLILAAIDMVD 299 (496)
Q Consensus 225 r~g~~--nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~---p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~ 299 (496)
..|+. ++.+.++|+...+. ...||+|+++||+++....... .+..+.. ...+..+|.+++++|
T Consensus 230 l~g~~~~~~~i~~gD~l~~~~---~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~--------~~~~~~fl~~~~~~L- 297 (445)
T 2okc_A 230 LHGIGTDRSPIVCEDSLEKEP---STLVDVILANPPFGTRPAGSVDINRPDFYVET--------KNNQLNFLQHMMLML- 297 (445)
T ss_dssp HTTCCSSCCSEEECCTTTSCC---SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCC--------SCHHHHHHHHHHHHE-
T ss_pred HhCCCcCCCCEeeCCCCCCcc---cCCcCEEEECCCCCCcccccchhhHhhcCCCC--------cchHHHHHHHHHHHh-
Confidence 98986 67788899876643 2489999999999986543221 1111111 112456788888886
Q ss_pred hcCCCCcEEEEEeCC--CCCcCCH-HHHHHHHHhCCcE
Q 010971 300 ANSKSGGYIVYSTCS--IMVTENE-AVIDYALKKRDVK 334 (496)
Q Consensus 300 ~~lkpGG~LVYSTCS--i~~eENE-~vV~~~L~~~~~~ 334 (496)
+|||++++.++. ++....+ .+..+++++..+.
T Consensus 298 ---k~gG~~a~V~p~~~L~~~~~~~~iR~~L~~~~~l~ 332 (445)
T 2okc_A 298 ---KTGGRAAVVLPDNVLFEAGAGETIRKRLLQDFNLH 332 (445)
T ss_dssp ---EEEEEEEEEEEHHHHHCSTHHHHHHHHHHHHEEEE
T ss_pred ---ccCCEEEEEECCcccccCcHHHHHHHHHHhcCcEE
Confidence 999999988865 2222223 3445666665444
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-10 Score=105.45 Aligned_cols=127 Identities=18% Similarity=0.247 Sum_probs=94.3
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~ 248 (496)
.....+.+.++.+|||+|||+|..+..++. ....|+++|+++..++.+++++..+|+.++.+...|+.. + +..+
T Consensus 26 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~--~~~~ 99 (183)
T 2yxd_A 26 VSIGKLNLNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-V--LDKL 99 (183)
T ss_dssp HHHHHHCCCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-H--GGGC
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-c--ccCC
Confidence 344556778899999999999999998887 447999999999999999999999999889999999865 2 2236
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHH
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L 328 (496)
.||.|+++.| .+ ...+|..+.+ + |||++++++|... +-..+...+
T Consensus 100 ~~D~i~~~~~--------~~------------------~~~~l~~~~~-----~-~gG~l~~~~~~~~---~~~~~~~~l 144 (183)
T 2yxd_A 100 EFNKAFIGGT--------KN------------------IEKIIEILDK-----K-KINHIVANTIVLE---NAAKIINEF 144 (183)
T ss_dssp CCSEEEECSC--------SC------------------HHHHHHHHHH-----T-TCCEEEEEESCHH---HHHHHHHHH
T ss_pred CCcEEEECCc--------cc------------------HHHHHHHHhh-----C-CCCEEEEEecccc---cHHHHHHHH
Confidence 8999999876 00 1234554444 2 9999999987642 223344455
Q ss_pred HhCCcEEe
Q 010971 329 KKRDVKLV 336 (496)
Q Consensus 329 ~~~~~~lv 336 (496)
++.++.+.
T Consensus 145 ~~~g~~~~ 152 (183)
T 2yxd_A 145 ESRGYNVD 152 (183)
T ss_dssp HHTTCEEE
T ss_pred HHcCCeEE
Confidence 66654443
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.15 E-value=3.3e-11 Score=108.41 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=82.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--CCCCcCEEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--GLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--~~~~fD~VLl 255 (496)
++.+|||+|||+|..+..++... ..|+++|+++..++.++.|+...++ ++.+++.|+..+.... ....||+|++
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~D~i~~ 116 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEG---WEAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTT---CEEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhhccCCceEEEEE
Confidence 78899999999999999998863 2399999999999999999999998 8899999987642111 1237999999
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHH--HHhhhhcCCCCcEEEEEeCCCCC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAA--IDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A--~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
|+|+. +.. + .++... .++ |+|||++++++++...
T Consensus 117 ~~~~~--~~~---~-------------------~~~~~~~~~~~----L~~gG~~~~~~~~~~~ 152 (171)
T 1ws6_A 117 APPYA--MDL---A-------------------ALFGELLASGL----VEAGGLYVLQHPKDLY 152 (171)
T ss_dssp CCCTT--SCT---T-------------------HHHHHHHHHTC----EEEEEEEEEEEETTSC
T ss_pred CCCCc--hhH---H-------------------HHHHHHHhhcc----cCCCcEEEEEeCCccC
Confidence 99965 210 0 112222 244 4999999998887654
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.8e-10 Score=110.75 Aligned_cols=128 Identities=11% Similarity=0.139 Sum_probs=99.9
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~V 253 (496)
-+.+|.+|||+|||+|..++.++... ..+.|+|+|+++..++.+++|++++|+.+ |.+..+|+...... ...||.|
T Consensus 18 ~v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~--~~~~D~I 94 (244)
T 3gnl_A 18 YITKNERIADIGSDHAYLPCFAVKNQ-TASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK--KDAIDTI 94 (244)
T ss_dssp TCCSSEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG--GGCCCEE
T ss_pred hCCCCCEEEEECCccHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc--cccccEE
Confidence 35689999999999999999988863 34689999999999999999999999976 99999998765421 1359998
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCc
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDV 333 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~ 333 (496)
++ .|.| ..+-.+||..+...+ +++|+||.+.- .....|..+|..++|
T Consensus 95 vi----agmG--------------------g~lI~~IL~~~~~~L----~~~~~lIlq~~-----~~~~~lr~~L~~~Gf 141 (244)
T 3gnl_A 95 VI----AGMG--------------------GTLIRTILEEGAAKL----AGVTKLILQPN-----IAAWQLREWSEQNNW 141 (244)
T ss_dssp EE----EEEC--------------------HHHHHHHHHHTGGGG----TTCCEEEEEES-----SCHHHHHHHHHHHTE
T ss_pred EE----eCCc--------------------hHHHHHHHHHHHHHh----CCCCEEEEEcC-----CChHHHHHHHHHCCC
Confidence 86 2333 122355777777765 89999998763 367788888888888
Q ss_pred EEeec
Q 010971 334 KLVPC 338 (496)
Q Consensus 334 ~lv~~ 338 (496)
.++..
T Consensus 142 ~i~~E 146 (244)
T 3gnl_A 142 LITSE 146 (244)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87654
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-10 Score=111.62 Aligned_cols=121 Identities=20% Similarity=0.250 Sum_probs=91.6
Q ss_pred cccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec
Q 010971 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236 (496)
Q Consensus 157 ~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~ 236 (496)
.|..+.+..........+.+.++.+|||+|||+|..+..++...+ +.|+++|+++..++.+++++..+|+.++.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~ 147 (235)
T 1jg1_A 70 AGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILG 147 (235)
T ss_dssp TTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred CCceeccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEC
Confidence 444544443334445666788999999999999999999999875 789999999999999999999999989999999
Q ss_pred CCCC-CccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 237 DGNE-LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 237 D~~~-~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
|+.. ++. ...||+|+++.++... ...+.+.| +|||+|+.++-.
T Consensus 148 d~~~~~~~---~~~fD~Ii~~~~~~~~----------------------------~~~~~~~L----~pgG~lvi~~~~ 191 (235)
T 1jg1_A 148 DGSKGFPP---KAPYDVIIVTAGAPKI----------------------------PEPLIEQL----KIGGKLIIPVGS 191 (235)
T ss_dssp CGGGCCGG---GCCEEEEEECSBBSSC----------------------------CHHHHHTE----EEEEEEEEEECS
T ss_pred CcccCCCC---CCCccEEEECCcHHHH----------------------------HHHHHHhc----CCCcEEEEEEec
Confidence 9722 221 2459999998764221 11334554 999999987654
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=6.5e-10 Score=104.35 Aligned_cols=114 Identities=14% Similarity=0.191 Sum_probs=86.7
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~ 248 (496)
+....+...++.+|||+|||+|..+..++... ..|+++|+++..++.+++++...+ ++.+...|+..++ ..+
T Consensus 42 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~---~~~ 113 (216)
T 3ofk_A 42 LLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWS--HISWAATDILQFS---TAE 113 (216)
T ss_dssp HHHHHTTTSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCS--SEEEEECCTTTCC---CSC
T ss_pred HHHHHcccCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCC--CeEEEEcchhhCC---CCC
Confidence 44455667788999999999999999888763 589999999999999999987754 7999999998886 247
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
.||+|++.. ++..-+ ++.. ...+|..+.++| +|||+|+++|.
T Consensus 114 ~fD~v~~~~------~l~~~~------~~~~-------~~~~l~~~~~~L----~pgG~l~~~~~ 155 (216)
T 3ofk_A 114 LFDLIVVAE------VLYYLE------DMTQ-------MRTAIDNMVKML----APGGHLVFGSA 155 (216)
T ss_dssp CEEEEEEES------CGGGSS------SHHH-------HHHHHHHHHHTE----EEEEEEEEEEE
T ss_pred CccEEEEcc------HHHhCC------CHHH-------HHHHHHHHHHHc----CCCCEEEEEec
Confidence 899999842 221111 1111 234677777776 99999999873
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.4e-10 Score=108.40 Aligned_cols=109 Identities=13% Similarity=0.215 Sum_probs=88.4
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~ 249 (496)
...+.+.+|.+|||+|||+|..+..++.. .+.|+++|+++.+++.+++++..+|+ .++.+...|+.... .....
T Consensus 84 ~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 158 (248)
T 2yvl_A 84 ALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE--VPEGI 158 (248)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC--CCTTC
T ss_pred HHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc--cCCCc
Confidence 34456678999999999999999999987 47999999999999999999999998 67999999987643 12368
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
||+|++|+| +| ..+|..+.++| +|||+|++.+.+.
T Consensus 159 ~D~v~~~~~---------~~------------------~~~l~~~~~~L----~~gG~l~~~~~~~ 193 (248)
T 2yvl_A 159 FHAAFVDVR---------EP------------------WHYLEKVHKSL----MEGAPVGFLLPTA 193 (248)
T ss_dssp BSEEEECSS---------CG------------------GGGHHHHHHHB----CTTCEEEEEESSH
T ss_pred ccEEEECCc---------CH------------------HHHHHHHHHHc----CCCCEEEEEeCCH
Confidence 999999877 11 12466677776 9999999877654
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.1e-10 Score=119.33 Aligned_cols=114 Identities=16% Similarity=0.191 Sum_probs=92.5
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.++.+|||+|||+|..+..++.. ...|+++|+|+..++.+++|+..+++. +.++..|+..++.. .+.||.|++|
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~~~-v~~~~~D~~~~~~~--~~~fD~Ii~n 305 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANALK-AQALHSDVDEALTE--EARFDIIVTN 305 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTSCT--TCCEEEEEEC
T ss_pred CCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEcchhhcccc--CCCeEEEEEC
Confidence 47889999999999999999886 359999999999999999999999986 78889999876532 3689999999
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
+|+...+... ......++..+.+.| +|||+|+++++...+
T Consensus 306 pp~~~~~~~~-----------------~~~~~~~l~~~~~~L----kpGG~l~iv~n~~l~ 345 (381)
T 3dmg_A 306 PPFHVGGAVI-----------------LDVAQAFVNVAAARL----RPGGVFFLVSNPFLK 345 (381)
T ss_dssp CCCCTTCSSC-----------------CHHHHHHHHHHHHHE----EEEEEEEEEECTTSC
T ss_pred Cchhhccccc-----------------HHHHHHHHHHHHHhc----CcCcEEEEEEcCCCC
Confidence 9986433211 122346788888886 999999999888754
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=4.6e-11 Score=120.61 Aligned_cols=90 Identities=18% Similarity=0.259 Sum_probs=77.9
Q ss_pred HHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccC---
Q 010971 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG--- 246 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~--- 246 (496)
++..|.+++|.+|||+|||+|+.|.+|+..++ .+.|+|+|+|+..++.+++|+..+| .++.++++|+..++..+.
T Consensus 18 ~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~~l~~~g 95 (301)
T 1m6y_A 18 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKTLG 95 (301)
T ss_dssp HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHHTT
T ss_pred HHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHHHHHhcC
Confidence 34667888999999999999999999999875 5899999999999999999999998 789999999887753321
Q ss_pred CCCcCEEEECCCCCC
Q 010971 247 LNTVDRVLLDAPCSG 261 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg 261 (496)
...||.|++|+|||.
T Consensus 96 ~~~~D~Vl~D~gvSs 110 (301)
T 1m6y_A 96 IEKVDGILMDLGVST 110 (301)
T ss_dssp CSCEEEEEEECSCCH
T ss_pred CCCCCEEEEcCccch
Confidence 147999999999984
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-10 Score=103.47 Aligned_cols=126 Identities=21% Similarity=0.228 Sum_probs=91.1
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc------ccCCCC
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK------VLGLNT 249 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~------~~~~~~ 249 (496)
+.++.+|||+|||+|..+..++..++..+.|+++|+++ .+. +.++.+...|+..++. .+..+.
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~----------~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP----------IVGVDFLQGDFRDELVMKALLERVGDSK 88 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC----------CTTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc----------cCcEEEEEcccccchhhhhhhccCCCCc
Confidence 67899999999999999999999875557999999998 542 2678888999887541 133468
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~ 329 (496)
||+|++|+|+...|.. ..+.......+..+|..+.++| +|||.++.++.. .++...+...+.
T Consensus 89 ~D~i~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~L----~~gG~l~~~~~~---~~~~~~~~~~~~ 150 (180)
T 1ej0_A 89 VQVVMSDMAPNMSGTP-----------AVDIPRAMYLVELALEMCRDVL----APGGSFVVKVFQ---GEGFDEYLREIR 150 (180)
T ss_dssp EEEEEECCCCCCCSCH-----------HHHHHHHHHHHHHHHHHHHHHE----EEEEEEEEEEES---STTHHHHHHHHH
T ss_pred eeEEEECCCccccCCC-----------ccchHHHHHHHHHHHHHHHHHc----CCCcEEEEEEec---CCcHHHHHHHHH
Confidence 9999999998776631 1122223344577888888886 999999986643 344444444444
Q ss_pred h
Q 010971 330 K 330 (496)
Q Consensus 330 ~ 330 (496)
.
T Consensus 151 ~ 151 (180)
T 1ej0_A 151 S 151 (180)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.1e-10 Score=107.84 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=87.3
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
+.++.+|||+|||+|..+..++...+ ...|+++|+++..++.+++++...+ ++.++..|+..++.. +.||+|++
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~---~~fD~v~~ 115 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFE---EKYDMVVS 115 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCC---SCEEEEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCC---CCceEEEE
Confidence 56789999999999999999999874 4799999999999999999987766 899999999887632 78999998
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
... +. ...... ...+|..+.++| +|||+|+.++....
T Consensus 116 ~~~------l~-------~~~~~~-------~~~~l~~~~~~L----kpgG~l~~~~~~~~ 152 (234)
T 3dtn_A 116 ALS------IH-------HLEDED-------KKELYKRSYSIL----KESGIFINADLVHG 152 (234)
T ss_dssp ESC------GG-------GSCHHH-------HHHHHHHHHHHE----EEEEEEEEEEECBC
T ss_pred eCc------cc-------cCCHHH-------HHHHHHHHHHhc----CCCcEEEEEEecCC
Confidence 543 11 111111 135677788876 99999999887653
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-09 Score=98.21 Aligned_cols=129 Identities=7% Similarity=0.011 Sum_probs=94.7
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
+.++.+|||+|||+|..+..++.. ...|+++|+++..++.++.++ .++.+...|+..++ +..+.||+|++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~~~--~~~~~~D~i~~ 113 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDF-----PEARWVVGDLSVDQ--ISETDFDLIVS 113 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTSC--CCCCCEEEEEE
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhC-----CCCcEEEcccccCC--CCCCceeEEEE
Confidence 457899999999999999998876 368999999999999998876 34778888988765 23478999999
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEE
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKL 335 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~l 335 (496)
++++-. ..+..+ ...+|..+.++| +|||++++++..... -....+..++...++++
T Consensus 114 ~~~~~~------------~~~~~~-------~~~~l~~~~~~l----~~~G~l~~~~~~~~~-~~~~~~~~~l~~~Gf~~ 169 (195)
T 3cgg_A 114 AGNVMG------------FLAEDG-------REPALANIHRAL----GADGRAVIGFGAGRG-WVFGDFLEVAERVGLEL 169 (195)
T ss_dssp CCCCGG------------GSCHHH-------HHHHHHHHHHHE----EEEEEEEEEEETTSS-CCHHHHHHHHHHHTEEE
T ss_pred CCcHHh------------hcChHH-------HHHHHHHHHHHh----CCCCEEEEEeCCCCC-cCHHHHHHHHHHcCCEE
Confidence 754311 111111 245677777776 999999987765432 34556666777778777
Q ss_pred eec
Q 010971 336 VPC 338 (496)
Q Consensus 336 v~~ 338 (496)
+..
T Consensus 170 ~~~ 172 (195)
T 3cgg_A 170 ENA 172 (195)
T ss_dssp EEE
T ss_pred eee
Confidence 654
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-11 Score=118.89 Aligned_cols=130 Identities=13% Similarity=0.151 Sum_probs=93.4
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHH---cCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC---cccc
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAAL---MKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL---PKVL 245 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l---~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~---~~~~ 245 (496)
.++...++.+|||+|||+|..|..|+.+ +.+.+.|+++|+++.+++.++ .++ .++.++.+|+..+ +. .
T Consensus 75 ~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~----~~~-~~v~~~~gD~~~~~~l~~-~ 148 (236)
T 2bm8_A 75 DMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----SDM-ENITLHQGDCSDLTTFEH-L 148 (236)
T ss_dssp HHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----GGC-TTEEEEECCSSCSGGGGG-G
T ss_pred HHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh----ccC-CceEEEECcchhHHHHHh-h
Confidence 3444456789999999999999999998 455689999999999887665 222 5799999999875 32 2
Q ss_pred CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHH-hhhhcCCCCcEEEEEeC-CCCCcCCHHH
Q 010971 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAID-MVDANSKSGGYIVYSTC-SIMVTENEAV 323 (496)
Q Consensus 246 ~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~-~l~~~lkpGG~LVYSTC-Si~~eENE~v 323 (496)
....||+|++|+. +. + ...+|..+.+ .| +|||+||+... .+.+..+.+.
T Consensus 149 ~~~~fD~I~~d~~---------~~---------~-------~~~~l~~~~r~~L----kpGG~lv~~d~~~~~~~~~~~~ 199 (236)
T 2bm8_A 149 REMAHPLIFIDNA---------HA---------N-------TFNIMKWAVDHLL----EEGDYFIIEDMIPYWYRYAPQL 199 (236)
T ss_dssp SSSCSSEEEEESS---------CS---------S-------HHHHHHHHHHHTC----CTTCEEEECSCHHHHHHHCHHH
T ss_pred ccCCCCEEEECCc---------hH---------h-------HHHHHHHHHHhhC----CCCCEEEEEeCcccccccCHHH
Confidence 2237999999875 10 0 1235666664 65 99999999753 3444556677
Q ss_pred HHHHHHhC--CcEEe
Q 010971 324 IDYALKKR--DVKLV 336 (496)
Q Consensus 324 V~~~L~~~--~~~lv 336 (496)
+..+++.. ++.++
T Consensus 200 ~~~~l~~~~~~f~~~ 214 (236)
T 2bm8_A 200 FSEYLGAFRDVLSMD 214 (236)
T ss_dssp HHHHHHTTTTTEEEE
T ss_pred HHHHHHhCcccEEEc
Confidence 88888775 45554
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-09 Score=106.32 Aligned_cols=115 Identities=13% Similarity=0.216 Sum_probs=90.4
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~ 249 (496)
...+.+.++.+|||+|||+|..+..++... .+.|+++|+|+..++.+++++...|+. ++.+...|+..++ +..+.
T Consensus 54 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 129 (273)
T 3bus_A 54 IALLDVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP--FEDAS 129 (273)
T ss_dssp HHHSCCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--SCTTC
T ss_pred HHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCC--CCCCC
Confidence 344567889999999999999999999875 379999999999999999999999986 5999999998876 33478
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
||+|++... +..-++ ...+|..+.++| +|||+|+.++...
T Consensus 130 fD~v~~~~~------l~~~~~----------------~~~~l~~~~~~L----~pgG~l~i~~~~~ 169 (273)
T 3bus_A 130 FDAVWALES------LHHMPD----------------RGRALREMARVL----RPGGTVAIADFVL 169 (273)
T ss_dssp EEEEEEESC------TTTSSC----------------HHHHHHHHHTTE----EEEEEEEEEEEEE
T ss_pred ccEEEEech------hhhCCC----------------HHHHHHHHHHHc----CCCeEEEEEEeec
Confidence 999997322 211111 134677777776 9999999988654
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.1e-11 Score=116.15 Aligned_cols=119 Identities=14% Similarity=0.185 Sum_probs=92.2
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCC-ccc--
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL-PKV-- 244 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~-~~~-- 244 (496)
+...++...++.+|||+|||+|..+..++..++..+.|+++|+++..++.+++++...|+.+ +.+...|+... +..
T Consensus 51 ~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 130 (239)
T 2hnk_A 51 FLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLID 130 (239)
T ss_dssp HHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHh
Confidence 44444555678999999999999999999998756899999999999999999999999976 99999987653 211
Q ss_pred ----------cC-C-CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 245 ----------LG-L-NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 245 ----------~~-~-~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+. . +.||+|++|+.. .. ...+|..+.++| +|||+||+.+
T Consensus 131 ~~~~~~~~~~f~~~~~~fD~I~~~~~~------------------~~-------~~~~l~~~~~~L----~pgG~lv~~~ 181 (239)
T 2hnk_A 131 SKSAPSWASDFAFGPSSIDLFFLDADK------------------EN-------YPNYYPLILKLL----KPGGLLIADN 181 (239)
T ss_dssp CSSCCGGGTTTCCSTTCEEEEEECSCG------------------GG-------HHHHHHHHHHHE----EEEEEEEEEC
T ss_pred hcccccccccccCCCCCcCEEEEeCCH------------------HH-------HHHHHHHHHHHc----CCCeEEEEEc
Confidence 11 1 679999998530 01 124577777776 9999999988
Q ss_pred CCCC
Q 010971 313 CSIM 316 (496)
Q Consensus 313 CSi~ 316 (496)
+.+.
T Consensus 182 ~~~~ 185 (239)
T 2hnk_A 182 VLWD 185 (239)
T ss_dssp SSGG
T ss_pred cccC
Confidence 7653
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-10 Score=111.08 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=87.6
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcC
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD 251 (496)
..+.+.++.+|||+|||+|..+.+++... ...|+++|+++..++.+++++... .++.+...|+..++ +..+.||
T Consensus 49 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~--~~~~~fD 122 (266)
T 3ujc_A 49 SDIELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKE--FPENNFD 122 (266)
T ss_dssp TTCCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCC--CCTTCEE
T ss_pred HhcCCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCC--CCCCcEE
Confidence 34467789999999999999999999976 369999999999999998887665 67999999998875 3347899
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
+|++... +. ..+.. ....+|..+.++| +|||+|++++.+.
T Consensus 123 ~v~~~~~------l~-------~~~~~-------~~~~~l~~~~~~L----~pgG~l~~~~~~~ 162 (266)
T 3ujc_A 123 LIYSRDA------IL-------ALSLE-------NKNKLFQKCYKWL----KPTGTLLITDYCA 162 (266)
T ss_dssp EEEEESC------GG-------GSCHH-------HHHHHHHHHHHHE----EEEEEEEEEEEEE
T ss_pred EEeHHHH------HH-------hcChH-------HHHHHHHHHHHHc----CCCCEEEEEEecc
Confidence 9997422 11 11111 2245677777776 9999999987644
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-10 Score=108.72 Aligned_cols=120 Identities=16% Similarity=0.162 Sum_probs=90.1
Q ss_pred cccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec
Q 010971 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236 (496)
Q Consensus 157 ~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~ 236 (496)
.|..+.+..........+.+.++.+|||+|||+|..+..++... +.|+++|+++..++.+++++...| ++.+...
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~ 123 (231)
T 1vbf_A 49 PGINTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN--NIKLILG 123 (231)
T ss_dssp TTEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS--SEEEEES
T ss_pred CCCccCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEEC
Confidence 34444443333344556678899999999999999999999874 689999999999999999998887 8889999
Q ss_pred CCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 237 DGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 237 D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
|+..... ..+.||+|+++.++... ...+.+.| +|||+|++++.+-
T Consensus 124 d~~~~~~--~~~~fD~v~~~~~~~~~----------------------------~~~~~~~L----~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 124 DGTLGYE--EEKPYDRVVVWATAPTL----------------------------LCKPYEQL----KEGGIMILPIGVG 168 (231)
T ss_dssp CGGGCCG--GGCCEEEEEESSBBSSC----------------------------CHHHHHTE----EEEEEEEEEECSS
T ss_pred Ccccccc--cCCCccEEEECCcHHHH----------------------------HHHHHHHc----CCCcEEEEEEcCC
Confidence 9876221 23689999998765321 01244454 9999999987653
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.5e-10 Score=118.46 Aligned_cols=79 Identities=19% Similarity=0.199 Sum_probs=70.2
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
+.++.+|||+|||+|..++.+|.. ...|+++|+++..++.+++|+..+|+. +.+..+|+..+.. ..||+|++
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~----~~fD~Vv~ 359 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSV----KGFDTVIV 359 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCC----TTCSEEEE
T ss_pred cCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCc----cCCCEEEE
Confidence 567899999999999999999875 358999999999999999999999998 9999999987642 27999999
Q ss_pred CCCCCCC
Q 010971 256 DAPCSGT 262 (496)
Q Consensus 256 DaPCSg~ 262 (496)
|||++|.
T Consensus 360 dPPr~g~ 366 (425)
T 2jjq_A 360 DPPRAGL 366 (425)
T ss_dssp CCCTTCS
T ss_pred cCCccch
Confidence 9998765
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=6.7e-11 Score=114.36 Aligned_cols=113 Identities=13% Similarity=0.082 Sum_probs=85.8
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
..+|.+|||+|||+|..+.+|++..+ ..|+++|+|+..++.++++....+. ++.++.+|+..+...+..+.||.|+.
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~FD~i~~ 134 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTLPDGHFDGILY 134 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred ccCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCC-ceEEEeehHHhhcccccccCCceEEE
Confidence 46899999999999999998887532 5899999999999999999988775 57778888876554455678999999
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
|+..+..... . ......++.++.++| ||||+|+|++
T Consensus 135 D~~~~~~~~~----------~-------~~~~~~~~~e~~rvL----kPGG~l~f~~ 170 (236)
T 3orh_A 135 DTYPLSEETW----------H-------THQFNFIKNHAFRLL----KPGGVLTYCN 170 (236)
T ss_dssp CCCCCBGGGT----------T-------THHHHHHHHTHHHHE----EEEEEEEECC
T ss_pred eeeecccchh----------h-------hcchhhhhhhhhhee----CCCCEEEEEe
Confidence 9764332211 0 012234677777776 9999999854
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.4e-10 Score=112.51 Aligned_cols=120 Identities=15% Similarity=0.218 Sum_probs=86.4
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH------cCCCeEEEEecCCCC-CccccCCC
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR------MGVTNTIVCNYDGNE-LPKVLGLN 248 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r------~g~~nv~v~~~D~~~-~~~~~~~~ 248 (496)
..++.+|||+|||+|..+..||...+ ...|+|+|+++.++..+++++.. .+..|+.++.+|+.. ++..+..+
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~ 122 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFP-DTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKG 122 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGST-TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTT
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCc
Confidence 35678999999999999999998764 46899999999999999998875 467899999999987 55444557
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.||.|++.-|. |..+.. ....+ ..+..+|..+.++| +|||.|+++|+.
T Consensus 123 ~~D~v~~~~~d---------p~~k~~---h~krr--~~~~~~l~~~~~~L----kpGG~l~~~td~ 170 (235)
T 3ckk_A 123 QLTKMFFLFPD---------PHFKRT---KHKWR--IISPTLLAEYAYVL----RVGGLVYTITDV 170 (235)
T ss_dssp CEEEEEEESCC-------------------------CCCHHHHHHHHHHE----EEEEEEEEEESC
T ss_pred CeeEEEEeCCC---------chhhhh---hhhhh--hhhHHHHHHHHHHC----CCCCEEEEEeCC
Confidence 89999986541 211110 00000 01245677777776 999999998863
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.7e-10 Score=109.47 Aligned_cols=109 Identities=16% Similarity=0.204 Sum_probs=87.4
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
.+.++.+|||+|||+|..+..++...+ .+.|+++|+++..++.+++++...|+.++.+...|+..++ +..+.||+|+
T Consensus 34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v~ 110 (276)
T 3mgg_A 34 VYPPGAKVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLP--FEDSSFDHIF 110 (276)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCC--SCTTCEEEEE
T ss_pred cCCCCCeEEEecCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCC--CCCCCeeEEE
Confidence 456899999999999999999998854 4799999999999999999999999999999999998776 3347899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+... +..-+ .+ ..+|..+.++| +|||+|+..+
T Consensus 111 ~~~~------l~~~~------~~----------~~~l~~~~~~L----~pgG~l~~~~ 142 (276)
T 3mgg_A 111 VCFV------LEHLQ------SP----------EEALKSLKKVL----KPGGTITVIE 142 (276)
T ss_dssp EESC------GGGCS------CH----------HHHHHHHHHHE----EEEEEEEEEE
T ss_pred Eech------hhhcC------CH----------HHHHHHHHHHc----CCCcEEEEEE
Confidence 8432 11111 11 24567777776 9999999986
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3.9e-10 Score=106.27 Aligned_cols=116 Identities=13% Similarity=0.072 Sum_probs=85.9
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEecCCCCCccccC
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-----NTIVCNYDGNELPKVLG 246 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-----nv~v~~~D~~~~~~~~~ 246 (496)
..+...++.+|||+|||+|..+..++...+ ...|+++|+++..++.+++++...++. ++.+...|+..++..
T Consensus 23 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-- 99 (219)
T 3jwg_A 23 AVLKSVNAKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKR-- 99 (219)
T ss_dssp HHHHHTTCCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGG--
T ss_pred HHHhhcCCCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccc--
Confidence 444456789999999999999999887643 369999999999999999999888775 789999998665532
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.+.||+|++.. ++. .....+ ...+|..+.+.| +|||.|+.+.++
T Consensus 100 ~~~fD~V~~~~------~l~-------~~~~~~-------~~~~l~~~~~~L----kpgG~~i~~~~~ 143 (219)
T 3jwg_A 100 FSGYDAATVIE------VIE-------HLDENR-------LQAFEKVLFEFT----RPQTVIVSTPNK 143 (219)
T ss_dssp GTTCSEEEEES------CGG-------GCCHHH-------HHHHHHHHHTTT----CCSEEEEEEEBG
T ss_pred cCCCCEEEEHH------HHH-------hCCHHH-------HHHHHHHHHHhh----CCCEEEEEccch
Confidence 37899999732 111 111111 234677777765 999987776654
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=8.6e-10 Score=101.50 Aligned_cols=114 Identities=18% Similarity=0.109 Sum_probs=88.3
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~ 248 (496)
.....+...++.+|||+|||+|..+..++.. ...|+++|+++..++.+++++...++.++.+...|+..++. .+
T Consensus 23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~ 96 (199)
T 2xvm_A 23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF---DR 96 (199)
T ss_dssp HHHHHTTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC---CC
T ss_pred HHHHHhhccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC---CC
Confidence 4455667778889999999999999998886 35899999999999999999999999889999999887653 37
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
.||+|++... +.. ....+ ...+|..+.++| +|||+|++.+
T Consensus 97 ~~D~v~~~~~------l~~-------~~~~~-------~~~~l~~~~~~L----~~gG~l~~~~ 136 (199)
T 2xvm_A 97 QYDFILSTVV------LMF-------LEAKT-------IPGLIANMQRCT----KPGGYNLIVA 136 (199)
T ss_dssp CEEEEEEESC------GGG-------SCGGG-------HHHHHHHHHHTE----EEEEEEEEEE
T ss_pred CceEEEEcch------hhh-------CCHHH-------HHHHHHHHHHhc----CCCeEEEEEE
Confidence 8999997543 110 11111 244677777776 9999987654
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-09 Score=107.19 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=88.6
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
.+.++.+|||+|||+|..+..++...+ ..|+++|+++..++.+++++...|+. ++.+...|+..++ +..+.||+|
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v 154 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP--CEDNSYDFI 154 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS--SCTTCEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC--CCCCCEeEE
Confidence 667899999999999999999998763 58999999999999999999999985 6999999998876 334789999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
++.- ++..-++ ...+|..+.++| +|||+|+.++...
T Consensus 155 ~~~~------~l~~~~~----------------~~~~l~~~~~~L----kpgG~l~~~~~~~ 190 (297)
T 2o57_A 155 WSQD------AFLHSPD----------------KLKVFQECARVL----KPRGVMAITDPMK 190 (297)
T ss_dssp EEES------CGGGCSC----------------HHHHHHHHHHHE----EEEEEEEEEEEEE
T ss_pred Eecc------hhhhcCC----------------HHHHHHHHHHHc----CCCeEEEEEEecc
Confidence 9732 1211111 134677777776 9999999987643
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.08 E-value=9.3e-11 Score=116.96 Aligned_cols=95 Identities=14% Similarity=0.074 Sum_probs=78.5
Q ss_pred EEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCC
Q 010971 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDG 238 (496)
Q Consensus 160 ~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~ 238 (496)
|..+.......+..+.+.++.+|||+|||+|..|..++... +.|+|+|+|+..+..+++++...|. .++.++++|+
T Consensus 10 fl~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~ 86 (285)
T 1zq9_A 10 ILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDV 86 (285)
T ss_dssp EECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCT
T ss_pred ccCCHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcce
Confidence 44444334455667788899999999999999999999873 5899999999999999999988887 5799999999
Q ss_pred CCCccccCCCCcCEEEECCCCCC
Q 010971 239 NELPKVLGLNTVDRVLLDAPCSG 261 (496)
Q Consensus 239 ~~~~~~~~~~~fD~VLlDaPCSg 261 (496)
..++ + ..||.|+++.|+..
T Consensus 87 ~~~~--~--~~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 87 LKTD--L--PFFDTCVANLPYQI 105 (285)
T ss_dssp TTSC--C--CCCSEEEEECCGGG
T ss_pred eccc--c--hhhcEEEEecCccc
Confidence 8764 2 47999999999754
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2e-11 Score=126.66 Aligned_cols=161 Identities=14% Similarity=0.040 Sum_probs=105.8
Q ss_pred ccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecC
Q 010971 158 GFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD 237 (496)
Q Consensus 158 G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D 237 (496)
|.|+--..-..+.+..+.+.++.+|||+|||+|+.++.+++.++....|+|+|+++..++.+ .++.+.+.|
T Consensus 19 g~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D 89 (421)
T 2ih2_A 19 GRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILAD 89 (421)
T ss_dssp --CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESC
T ss_pred ceEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCC
Confidence 44443333344455666665677999999999999999998875457999999999888655 468888999
Q ss_pred CCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHH----------HHHHHHHHHHHHHHhhhhcCCCCcE
Q 010971 238 GNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK----------CSYLQKQLILAAIDMVDANSKSGGY 307 (496)
Q Consensus 238 ~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~----------l~~lQ~~LL~~A~~~l~~~lkpGG~ 307 (496)
...+.. .+.||+|+++||+...+...+-. .......... ...++..++..++++| +|||+
T Consensus 90 ~~~~~~---~~~fD~Ii~NPPy~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~L----k~~G~ 159 (421)
T 2ih2_A 90 FLLWEP---GEAFDLILGNPPYGIVGEASKYP---IHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLL----KPGGV 159 (421)
T ss_dssp GGGCCC---SSCEEEEEECCCCCCBSCTTTCS---BCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHE----EEEEE
T ss_pred hhhcCc---cCCCCEEEECcCccCcccccccc---cccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHh----CCCCE
Confidence 876542 26899999999998766421100 0000111111 1124567899999987 99999
Q ss_pred EEEEeCC--CCCcCCHHHHHHHHHhCCcEEee
Q 010971 308 IVYSTCS--IMVTENEAVIDYALKKRDVKLVP 337 (496)
Q Consensus 308 LVYSTCS--i~~eENE~vV~~~L~~~~~~lv~ 337 (496)
+++.+++ +.....+.+.+++++.....++.
T Consensus 160 ~~~i~p~~~l~~~~~~~lr~~l~~~~~~~i~~ 191 (421)
T 2ih2_A 160 LVFVVPATWLVLEDFALLREFLAREGKTSVYY 191 (421)
T ss_dssp EEEEEEGGGGTCGGGHHHHHHHHHHSEEEEEE
T ss_pred EEEEEChHHhcCccHHHHHHHHHhcCCeEEEE
Confidence 9998876 22334456666666553333333
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.08 E-value=6.9e-10 Score=110.66 Aligned_cols=114 Identities=11% Similarity=-0.032 Sum_probs=88.6
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~V 253 (496)
.+.++.+|||+|||+|..+..++....+.+.|+++|+++..++.+++++...|+.+ +.++..|+..++. . +.||.|
T Consensus 115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~-~~fD~v 191 (305)
T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT--R-EGYDLL 191 (305)
T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC--C-SCEEEE
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc--c-CCeEEE
Confidence 45789999999999999999886333445799999999999999999999999876 9999999988762 3 789999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
++..+ +..-| ++. ....+|..+.+.| +|||+|++++.+
T Consensus 192 ~~~~~------~~~~~------~~~-------~~~~~l~~~~~~L----kpgG~l~i~~~~ 229 (305)
T 3ocj_A 192 TSNGL------NIYEP------DDA-------RVTELYRRFWQAL----KPGGALVTSFLT 229 (305)
T ss_dssp ECCSS------GGGCC------CHH-------HHHHHHHHHHHHE----EEEEEEEEECCC
T ss_pred EECCh------hhhcC------CHH-------HHHHHHHHHHHhc----CCCeEEEEEecC
Confidence 97543 11111 111 1235678888876 999999998754
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-09 Score=107.47 Aligned_cols=113 Identities=11% Similarity=0.044 Sum_probs=87.5
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCc
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~f 250 (496)
..+.+.++.+|||+|||+|..+.+++...+ ..|+++|+|+..++.+++++...|+. ++.+...|+..++ +.|
T Consensus 58 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~f 130 (287)
T 1kpg_A 58 GKLGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-----EPV 130 (287)
T ss_dssp TTTTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-----CCC
T ss_pred HHcCCCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-----CCe
Confidence 345677899999999999999999997653 49999999999999999999999875 6899999987654 679
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
|+|++.- ++..-+ .. ....+|..+.++| +|||+|+.++...
T Consensus 131 D~v~~~~------~l~~~~-------~~-------~~~~~l~~~~~~L----kpgG~l~~~~~~~ 171 (287)
T 1kpg_A 131 DRIVSIG------AFEHFG-------HE-------RYDAFFSLAHRLL----PADGVMLLHTITG 171 (287)
T ss_dssp SEEEEES------CGGGTC-------TT-------THHHHHHHHHHHS----CTTCEEEEEEEEE
T ss_pred eEEEEeC------chhhcC-------hH-------HHHHHHHHHHHhc----CCCCEEEEEEecC
Confidence 9999732 221111 00 1234677777775 9999999988664
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.07 E-value=3.1e-10 Score=105.84 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=84.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
++.+|||+|||+|..+..++...+ .+.|+++|+++..++.++.++..+|+.++.+...|+..++. .+.||.|+++.
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~D~i~~~~ 140 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS---EPPFDGVISRA 140 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC---CSCEEEEECSC
T ss_pred CCCeEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc---cCCcCEEEEec
Confidence 478999999999999999998864 47999999999999999999999999889999999987652 36899999742
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
- .+ ...++..+.++| +|||++++....
T Consensus 141 ~-------------------~~-------~~~~l~~~~~~L----~~gG~l~~~~~~ 167 (207)
T 1jsx_A 141 F-------------------AS-------LNDMVSWCHHLP----GEQGRFYALKGQ 167 (207)
T ss_dssp S-------------------SS-------HHHHHHHHTTSE----EEEEEEEEEESS
T ss_pred c-------------------CC-------HHHHHHHHHHhc----CCCcEEEEEeCC
Confidence 1 00 134677777765 999999987554
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.5e-10 Score=109.84 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=96.3
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
+.++.+|||+|||+|..+..++.+ + ..|+++|+++..++.+++|+..+|+. +.+...|+... +..+.||+|++
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~--g-~~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~---~~~~~fD~Vv~ 190 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKL--G-GKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA---LPFGPFDLLVA 190 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--T-CEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH---GGGCCEEEEEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHh--C-CeEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhc---CcCCCCCEEEE
Confidence 467899999999999999887774 2 28999999999999999999999987 88888887552 22368999999
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEE
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKL 335 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~l 335 (496)
+.+. .....++..+.++| +|||+|+.++... +....+..+++..++++
T Consensus 191 n~~~-------------------------~~~~~~l~~~~~~L----kpgG~lils~~~~---~~~~~v~~~l~~~Gf~~ 238 (254)
T 2nxc_A 191 NLYA-------------------------ELHAALAPRYREAL----VPGGRALLTGILK---DRAPLVREAMAGAGFRP 238 (254)
T ss_dssp ECCH-------------------------HHHHHHHHHHHHHE----EEEEEEEEEEEEG---GGHHHHHHHHHHTTCEE
T ss_pred CCcH-------------------------HHHHHHHHHHHHHc----CCCCEEEEEeecc---CCHHHHHHHHHHCCCEE
Confidence 7641 11245677777776 9999999976543 45666777777888887
Q ss_pred eec
Q 010971 336 VPC 338 (496)
Q Consensus 336 v~~ 338 (496)
+..
T Consensus 239 ~~~ 241 (254)
T 2nxc_A 239 LEE 241 (254)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.5e-09 Score=100.76 Aligned_cols=113 Identities=12% Similarity=0.202 Sum_probs=87.0
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEecCCCCCccccCCCCc
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-----NTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-----nv~v~~~D~~~~~~~~~~~~f 250 (496)
+.++.+|||+|||+|..+..++.. ...|+++|+++..++.++.++...++. ++.+...|+..++ +..+.|
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~ 102 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS--FHDSSF 102 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCC--SCTTCE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccC--CCCCce
Confidence 357899999999999999999886 358999999999999999999988873 6889999998876 334789
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
|+|++... +..-+ ++.. ...+|..+.++| +|||+|+.+++...
T Consensus 103 D~v~~~~~------l~~~~------~~~~-------~~~~l~~~~~~L----~pgG~l~~~~~~~~ 145 (235)
T 3sm3_A 103 DFAVMQAF------LTSVP------DPKE-------RSRIIKEVFRVL----KPGAYLYLVEFGQN 145 (235)
T ss_dssp EEEEEESC------GGGCC------CHHH-------HHHHHHHHHHHE----EEEEEEEEEEEBCC
T ss_pred eEEEEcch------hhcCC------CHHH-------HHHHHHHHHHHc----CCCeEEEEEECCcc
Confidence 99998532 11111 1111 235677777776 99999999887653
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-09 Score=109.55 Aligned_cols=116 Identities=9% Similarity=0.070 Sum_probs=90.1
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~ 249 (496)
...+.+.+|.+|||+|||+|..+..++...+ ..|+++|+++..++.+++++...|+. ++.+...|+..++ +.
T Consensus 83 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~ 155 (318)
T 2fk8_A 83 LDKLDLKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-----EP 155 (318)
T ss_dssp HTTSCCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-----CC
T ss_pred HHhcCCCCcCEEEEEcccchHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC-----CC
Confidence 3445678899999999999999999998762 59999999999999999999999986 4889999987664 67
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
||+|++... +..-+ .. ....+|..+.++| +|||+|+.++.....
T Consensus 156 fD~v~~~~~------l~~~~-------~~-------~~~~~l~~~~~~L----kpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 156 VDRIVSIEA------FEHFG-------HE-------NYDDFFKRCFNIM----PADGRMTVQSSVSYH 199 (318)
T ss_dssp CSEEEEESC------GGGTC-------GG-------GHHHHHHHHHHHS----CTTCEEEEEEEECCC
T ss_pred cCEEEEeCh------HHhcC-------HH-------HHHHHHHHHHHhc----CCCcEEEEEEeccCC
Confidence 999997422 11111 01 1244677777776 999999998887643
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.05 E-value=3.2e-10 Score=106.87 Aligned_cols=115 Identities=7% Similarity=0.001 Sum_probs=82.2
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH------------cCCCeEEEEecCCCCC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR------------MGVTNTIVCNYDGNEL 241 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r------------~g~~nv~v~~~D~~~~ 241 (496)
+.+.++.+|||+|||+|..+..|+.. ...|+|+|+|+.+++.++++... .+..++.++++|+..+
T Consensus 18 l~~~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l 94 (203)
T 1pjz_A 18 LNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL 94 (203)
T ss_dssp HCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred cccCCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccC
Confidence 45668899999999999999999986 25899999999999999887643 1235788999999888
Q ss_pred ccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 242 ~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
+... .+.||.|++-. ++. ..... ....++.++.++| +|||++++.|+...
T Consensus 95 ~~~~-~~~fD~v~~~~------~l~-------~l~~~-------~~~~~l~~~~r~L----kpgG~~~l~~~~~~ 144 (203)
T 1pjz_A 95 TARD-IGHCAAFYDRA------AMI-------ALPAD-------MRERYVQHLEALM----PQACSGLLITLEYD 144 (203)
T ss_dssp THHH-HHSEEEEEEES------CGG-------GSCHH-------HHHHHHHHHHHHS----CSEEEEEEEEESSC
T ss_pred Cccc-CCCEEEEEECc------chh-------hCCHH-------HHHHHHHHHHHHc----CCCcEEEEEEEecC
Confidence 6321 15799998622 111 11111 1234567777765 99999777776553
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.03 E-value=4.7e-10 Score=121.75 Aligned_cols=163 Identities=15% Similarity=0.079 Sum_probs=111.8
Q ss_pred cccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCC-----------------cEEEEEeCCHHHHHHH
Q 010971 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNT-----------------GLIYANEMKASRLKSL 219 (496)
Q Consensus 157 ~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~-----------------g~V~A~D~s~~rl~~l 219 (496)
.|.|+--..-+.+.+.++.|.++.+|||.|||+|+..+.++..+... ..|+|+|+++..+..+
T Consensus 148 ~G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA 227 (541)
T 2ar0_A 148 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 227 (541)
T ss_dssp --CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred CCeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHH
Confidence 45444333344566777889999999999999999999988876422 3799999999999999
Q ss_pred HHHHHHcCCCe-----EEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHH
Q 010971 220 TANLHRMGVTN-----TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAA 294 (496)
Q Consensus 220 ~~nl~r~g~~n-----v~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A 294 (496)
+.|+...|+.+ +.+.++|+...+. .....||+|+.+||+++........+..... ...+...+.++
T Consensus 228 ~~nl~l~gi~~~~~~~~~I~~gDtL~~~~-~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~--------~~~~~~Fl~~~ 298 (541)
T 2ar0_A 228 LMNCLLHDIEGNLDHGGAIRLGNTLGSDG-ENLPKAHIVATNPPFGSAAGTNITRTFVHPT--------SNKQLCFMQHI 298 (541)
T ss_dssp HHHHHTTTCCCBGGGTBSEEESCTTSHHH-HTSCCEEEEEECCCCTTCSSCCCCSCCSSCC--------SCHHHHHHHHH
T ss_pred HHHHHHhCCCccccccCCeEeCCCccccc-ccccCCeEEEECCCcccccchhhHhhcCCCC--------CchHHHHHHHH
Confidence 99999889876 7788899866432 1236899999999999875432111111110 11234568888
Q ss_pred HHhhhhcCCCCcEEEEEeCC--CCCcCCHH-HHHHHHHhCC
Q 010971 295 IDMVDANSKSGGYIVYSTCS--IMVTENEA-VIDYALKKRD 332 (496)
Q Consensus 295 ~~~l~~~lkpGG~LVYSTCS--i~~eENE~-vV~~~L~~~~ 332 (496)
+++| +|||++++.+.. ++....+. +-.+++++..
T Consensus 299 l~~L----k~gGr~a~V~p~~~L~~~~~~~~iR~~L~~~~~ 335 (541)
T 2ar0_A 299 IETL----HPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCH 335 (541)
T ss_dssp HHHE----EEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHEE
T ss_pred HHHh----CCCCEEEEEecCcceecCcHHHHHHHHHhhcCC
Confidence 8887 999999887653 22222234 4456666543
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.1e-10 Score=115.89 Aligned_cols=106 Identities=13% Similarity=0.124 Sum_probs=73.5
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeC----CHHHHHHHHHHHHHcCCCeEEEEec-CCCCCccccCCCCc
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM----KASRLKSLTANLHRMGVTNTIVCNY-DGNELPKVLGLNTV 250 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~----s~~rl~~l~~nl~r~g~~nv~v~~~-D~~~~~~~~~~~~f 250 (496)
+.+|.+|||+|||||+.|.++++. +.|+|+|+ ++.++..+ .+...|..++.++.. |+..++ ...|
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~D~~~l~----~~~f 149 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPI--PMSTYGWNLVRLQSGVDVFFIP----PERC 149 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCC--CCCSTTGGGEEEECSCCTTTSC----CCCC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHH--HhhhcCCCCeEEEeccccccCC----cCCC
Confidence 467999999999999999998876 57999999 55433211 122334467888888 888765 2689
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
|+|++|.+|+ +|... .+... +..+|..+.+.| +|||.+|..
T Consensus 150 D~V~sd~~~~-~g~~~----------~d~~~-----~l~~L~~~~~~L----kpGG~~v~k 190 (305)
T 2p41_A 150 DTLLCDIGES-SPNPT----------VEAGR-----TLRVLNLVENWL----SNNTQFCVK 190 (305)
T ss_dssp SEEEECCCCC-CSSHH----------HHHHH-----HHHHHHHHHHHC----CTTCEEEEE
T ss_pred CEEEECCccc-cCcch----------hhHHH-----HHHHHHHHHHHh----CCCCEEEEE
Confidence 9999999987 66421 11110 113566666665 999988864
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-10 Score=110.47 Aligned_cols=115 Identities=13% Similarity=0.075 Sum_probs=84.5
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
+.++.+|||+|||+|..+..++... ...|+++|+|+..++.+++++...+ .++.++.+|+..+...+..+.||.|++
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~V~~ 134 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLPDGHFDGILY 134 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhcccCCCceEEEEE
Confidence 5789999999999999999886532 2489999999999999999998887 578999999877622244578999999
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
|.- +. .+ .++. . .....+|..+.++| ||||+|++++++
T Consensus 135 d~~--~~-~~-~~~~------~-------~~~~~~l~~~~r~L----kpgG~l~~~~~~ 172 (236)
T 1zx0_A 135 DTY--PL-SE-ETWH------T-------HQFNFIKNHAFRLL----KPGGVLTYCNLT 172 (236)
T ss_dssp CCC--CC-BG-GGTT------T-------HHHHHHHHTHHHHE----EEEEEEEECCHH
T ss_pred CCc--cc-ch-hhhh------h-------hhHHHHHHHHHHhc----CCCeEEEEEecC
Confidence 721 11 10 1110 0 11234677777776 999999987655
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2.3e-09 Score=99.49 Aligned_cols=108 Identities=12% Similarity=0.119 Sum_probs=83.7
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
..++ +|||+|||+|..+..++.. ...|+++|+++..++.+++++...+. ++.+...|+..++ +..+.||.|++
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~--~~~~~fD~v~~ 100 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFD--IVADAWEGIVS 100 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBS--CCTTTCSEEEE
T ss_pred CCCC-CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcC--CCcCCccEEEE
Confidence 4567 9999999999999888875 35899999999999999999999887 7889999998775 33478999997
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
.. .. ....+ ...+|..+.++| +|||+|+.++.+..
T Consensus 101 ~~-----~~----------~~~~~-------~~~~l~~~~~~L----~pgG~l~~~~~~~~ 135 (202)
T 2kw5_A 101 IF-----CH----------LPSSL-------RQQLYPKVYQGL----KPGGVFILEGFAPE 135 (202)
T ss_dssp EC-----CC----------CCHHH-------HHHHHHHHHTTC----CSSEEEEEEEECTT
T ss_pred Eh-----hc----------CCHHH-------HHHHHHHHHHhc----CCCcEEEEEEeccc
Confidence 21 11 11111 345677777765 99999999886643
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=8.9e-10 Score=115.56 Aligned_cols=117 Identities=14% Similarity=0.070 Sum_probs=85.4
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH-------HHcCC--CeEEEEecCCCCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL-------HRMGV--TNTIVCNYDGNEL 241 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl-------~r~g~--~nv~v~~~D~~~~ 241 (496)
...+.+.+|++|||+|||+|..++.+|...+ ...|+|+|+++..+..+++++ ..+|+ .+|.++++|+..+
T Consensus 166 l~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~l 244 (438)
T 3uwp_A 166 IDEIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE 244 (438)
T ss_dssp HHHHCCCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSH
T ss_pred HHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCC
Confidence 3456789999999999999999999988754 357999999999998888765 44676 5799999999887
Q ss_pred ccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 242 ~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
+.......||+|+++.+|.. |+ + ...|...++. |||||+||.+....
T Consensus 245 p~~d~~~~aDVVf~Nn~~F~-------pd---------l-------~~aL~Ei~Rv----LKPGGrIVssE~f~ 291 (438)
T 3uwp_A 245 EWRERIANTSVIFVNNFAFG-------PE---------V-------DHQLKERFAN----MKEGGRIVSSKPFA 291 (438)
T ss_dssp HHHHHHHTCSEEEECCTTCC-------HH---------H-------HHHHHHHHTT----SCTTCEEEESSCSS
T ss_pred ccccccCCccEEEEcccccC-------ch---------H-------HHHHHHHHHc----CCCCcEEEEeeccc
Confidence 53110147999999887531 11 1 1224444454 59999999654443
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-09 Score=111.56 Aligned_cols=113 Identities=16% Similarity=0.197 Sum_probs=88.5
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc-----C-C--CeEEEEecCCCCCcc----
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-----G-V--TNTIVCNYDGNELPK---- 243 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~-----g-~--~nv~v~~~D~~~~~~---- 243 (496)
+.+|.+|||+|||+|..+..++...++.+.|+++|+++..++.+++++..+ | . .++.++..|+..+..
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 567899999999999999999999866689999999999999999999876 4 3 589999999987621
Q ss_pred ccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 244 ~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.+..+.||+|++... +..-++ ...+|..+.++| +|||+|++++..
T Consensus 161 ~~~~~~fD~V~~~~~------l~~~~d----------------~~~~l~~~~r~L----kpgG~l~i~~~~ 205 (383)
T 4fsd_A 161 GVPDSSVDIVISNCV------CNLSTN----------------KLALFKEIHRVL----RDGGELYFSDVY 205 (383)
T ss_dssp CCCTTCEEEEEEESC------GGGCSC----------------HHHHHHHHHHHE----EEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEccc------hhcCCC----------------HHHHHHHHHHHc----CCCCEEEEEEec
Confidence 234578999998642 111111 135678888876 999999998644
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.02 E-value=5.4e-10 Score=110.34 Aligned_cols=117 Identities=14% Similarity=0.119 Sum_probs=92.4
Q ss_pred hhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCC
Q 010971 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 168 ~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~ 247 (496)
.+.-.++...++.+|||+|||+|..+..++...++...|+++|+++..+..+++++...+. ++.+...|+..++. .
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~---~ 87 (284)
T 3gu3_A 12 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIEL---N 87 (284)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCC---S
T ss_pred HHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhhcCc---C
Confidence 3434445667899999999999999999998876557999999999999999999998877 89999999988763 2
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
+.||.|++... +..-++ ...+|..+.++| +|||+|+..++.
T Consensus 88 ~~fD~v~~~~~------l~~~~~----------------~~~~l~~~~~~L----kpgG~l~~~~~~ 128 (284)
T 3gu3_A 88 DKYDIAICHAF------LLHMTT----------------PETMLQKMIHSV----KKGGKIICFEPH 128 (284)
T ss_dssp SCEEEEEEESC------GGGCSS----------------HHHHHHHHHHTE----EEEEEEEEEECC
T ss_pred CCeeEEEECCh------hhcCCC----------------HHHHHHHHHHHc----CCCCEEEEEecc
Confidence 68999998542 111111 125677788876 999999988776
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-09 Score=111.25 Aligned_cols=124 Identities=19% Similarity=0.210 Sum_probs=95.2
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccC
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~ 246 (496)
+.+....+.+.++.+|||+|||+|..+..++...+ ...|+++|+|+..++.+++++...++. +.+...|+..++
T Consensus 185 ~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~~---- 258 (343)
T 2pjd_A 185 SQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSP-KIRLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSEV---- 258 (343)
T ss_dssp HHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCT-TCBCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTC----
T ss_pred HHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC-CEEEEccccccc----
Confidence 44455566666788999999999999999998753 368999999999999999999999886 456788886653
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
.+.||.|++++|.. .|.. ........+|..+.+.| +|||.|++.+.+..+
T Consensus 259 ~~~fD~Iv~~~~~~-~g~~----------------~~~~~~~~~l~~~~~~L----kpgG~l~i~~~~~~~ 308 (343)
T 2pjd_A 259 KGRFDMIISNPPFH-DGMQ----------------TSLDAAQTLIRGAVRHL----NSGGELRIVANAFLP 308 (343)
T ss_dssp CSCEEEEEECCCCC-SSSH----------------HHHHHHHHHHHHHGGGE----EEEEEEEEEEETTSS
T ss_pred cCCeeEEEECCCcc-cCcc----------------CCHHHHHHHHHHHHHhC----CCCcEEEEEEcCCCC
Confidence 36899999999853 1110 01122355777777776 999999999888765
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-09 Score=104.49 Aligned_cols=136 Identities=14% Similarity=0.080 Sum_probs=96.9
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
.+...++.+|||+|||+|..+..++... ...|+++|+++..++.+++++... .++.+...|+..++ +..+.||+
T Consensus 88 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~--~~~~~fD~ 161 (254)
T 1xtp_A 88 SLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETAT--LPPNTYDL 161 (254)
T ss_dssp TSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCC--CCSSCEEE
T ss_pred hhcccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCC--CCCCCeEE
Confidence 3455678999999999999999998875 357999999999999999988665 67889999987765 23478999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCc------------CC
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT------------EN 320 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~e------------EN 320 (496)
|++.. ++. ..+.. ....+|..+.++| +|||+|++++...... -.
T Consensus 162 v~~~~------~l~-------~~~~~-------~~~~~l~~~~~~L----kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 217 (254)
T 1xtp_A 162 IVIQW------TAI-------YLTDA-------DFVKFFKHCQQAL----TPNGYIFFKENCSTGDRFLVDKEDSSLTRS 217 (254)
T ss_dssp EEEES------CGG-------GSCHH-------HHHHHHHHHHHHE----EEEEEEEEEEEBC--CCEEEETTTTEEEBC
T ss_pred EEEcc------hhh-------hCCHH-------HHHHHHHHHHHhc----CCCeEEEEEecCCCcccceecccCCcccCC
Confidence 99732 111 11111 1345677777776 9999999988532211 13
Q ss_pred HHHHHHHHHhCCcEEeec
Q 010971 321 EAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 321 E~vV~~~L~~~~~~lv~~ 338 (496)
.+.+..+|+..+++++.+
T Consensus 218 ~~~~~~~l~~aGf~~~~~ 235 (254)
T 1xtp_A 218 DIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp HHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHCCCEEEEe
Confidence 455666666666666544
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.1e-09 Score=99.11 Aligned_cols=107 Identities=15% Similarity=0.101 Sum_probs=83.4
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
...++.+|||+|||+|..+..++.. ...|+++|+++..++.++. .|..++.++..|+..+ ...+.||+|+
T Consensus 43 ~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~---~~~~~~D~v~ 112 (218)
T 3ou2_A 43 AGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDW---TPDRQWDAVF 112 (218)
T ss_dssp TTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSC---CCSSCEEEEE
T ss_pred cCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cCCCCeEEEecccccC---CCCCceeEEE
Confidence 3677889999999999999999887 3689999999999998877 6777899999999876 2347899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
+.. ++..- .. .....+|..+.++| +|||+|++++.+.
T Consensus 113 ~~~------~l~~~-------~~-------~~~~~~l~~~~~~L----~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 113 FAH------WLAHV-------PD-------DRFEAFWESVRSAV----APGGVVEFVDVTD 149 (218)
T ss_dssp EES------CGGGS-------CH-------HHHHHHHHHHHHHE----EEEEEEEEEEECC
T ss_pred Eec------hhhcC-------CH-------HHHHHHHHHHHHHc----CCCeEEEEEeCCC
Confidence 742 22111 11 11245677777776 9999999998876
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.01 E-value=9.1e-10 Score=103.81 Aligned_cols=143 Identities=14% Similarity=0.173 Sum_probs=95.5
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH----HHcCCCeEEEEecCCCCCccccC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL----HRMGVTNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl----~r~g~~nv~v~~~D~~~~~~~~~ 246 (496)
...+.+.++.+|||+|||+|..+..++...+ .+.|+++|+++.++..+.+++ ...++.++.+.+.|+..++..
T Consensus 20 ~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~-- 96 (218)
T 3mq2_A 20 FEQLRSQYDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPL-- 96 (218)
T ss_dssp HHHHHTTSSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSC--
T ss_pred HHHhhccCCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCC--
Confidence 3455678899999999999999999999753 479999999999888654444 356788999999999887632
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC-----------
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI----------- 315 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi----------- 315 (496)
.+. |.|.+..|. . .........+..+|..+.++| +|||+|+++....
T Consensus 97 ~~~-d~v~~~~~~----------------~-~~~~~~~~~~~~~l~~~~~~L----kpgG~l~~~~~~~~~~~~~~~~~~ 154 (218)
T 3mq2_A 97 SGV-GELHVLMPW----------------G-SLLRGVLGSSPEMLRGMAAVC----RPGASFLVALNLHAWRPSVPEVGE 154 (218)
T ss_dssp CCE-EEEEEESCC----------------H-HHHHHHHTSSSHHHHHHHHTE----EEEEEEEEEEEGGGBTTBCGGGTT
T ss_pred CCC-CEEEEEccc----------------h-hhhhhhhccHHHHHHHHHHHc----CCCcEEEEEecccccccccccccc
Confidence 244 877754431 0 001011111245677777776 9999999853221
Q ss_pred CCcCCHH----HHHHHHHhCCcEEeec
Q 010971 316 MVTENEA----VIDYALKKRDVKLVPC 338 (496)
Q Consensus 316 ~~eENE~----vV~~~L~~~~~~lv~~ 338 (496)
.+.-+.. .+...+...+++++.+
T Consensus 155 ~~~~~~~~~~~~l~~~l~~aGf~i~~~ 181 (218)
T 3mq2_A 155 HPEPTPDSADEWLAPRYAEAGWKLADC 181 (218)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTEEEEEE
T ss_pred CCccchHHHHHHHHHHHHHcCCCceee
Confidence 1122222 2344566678877665
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.01 E-value=2.5e-09 Score=100.63 Aligned_cols=108 Identities=13% Similarity=0.141 Sum_probs=84.7
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.++.+|||+|||+|..+..++... ..|+++|+++..++.+++++...+ .++.++..|+..++ +..+.||+|++.
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~--~~~~~~D~v~~~ 110 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLS--FEDKTFDYVIFI 110 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCC--SCTTCEEEEEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCC--CCCCcEEEEEEc
Confidence 458899999999999999888763 289999999999999999999888 67889999998765 334689999987
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.+.. .....+ ...+|..+.++| +|||+|+++++.
T Consensus 111 ~~~~-------------~~~~~~-------~~~~l~~~~~~L----~~gG~l~~~~~~ 144 (227)
T 1ve3_A 111 DSIV-------------HFEPLE-------LNQVFKEVRRVL----KPSGKFIMYFTD 144 (227)
T ss_dssp SCGG-------------GCCHHH-------HHHHHHHHHHHE----EEEEEEEEEEEC
T ss_pred CchH-------------hCCHHH-------HHHHHHHHHHHc----CCCcEEEEEecC
Confidence 5510 011111 245677777776 999999998775
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.7e-09 Score=99.93 Aligned_cols=128 Identities=13% Similarity=0.059 Sum_probs=93.2
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
...++.+|||+|||+|..+..++.. ...|+++|+++..+..++.++ ++.+...|+..++ ..+.||+|+
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~---~~~~fD~v~ 107 (211)
T 3e23_A 40 ELPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL------GRPVRTMLFHQLD---AIDAYDAVW 107 (211)
T ss_dssp TSCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH------TSCCEECCGGGCC---CCSCEEEEE
T ss_pred hcCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc------CCceEEeeeccCC---CCCcEEEEE
Confidence 3557899999999999999998876 358999999999999999887 3456677877776 247899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCc-----------CCHHH
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT-----------ENEAV 323 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~e-----------ENE~v 323 (496)
+... +. .....+ ...+|..+.++| +|||+|+.+++..... -+.+.
T Consensus 108 ~~~~------l~-------~~~~~~-------~~~~l~~~~~~L----kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
T 3e23_A 108 AHAC------LL-------HVPRDE-------LADVLKLIWRAL----KPGGLFYASYKSGEGEGRDKLARYYNYPSEEW 163 (211)
T ss_dssp ECSC------GG-------GSCHHH-------HHHHHHHHHHHE----EEEEEEEEEEECCSSCEECTTSCEECCCCHHH
T ss_pred ecCc------hh-------hcCHHH-------HHHHHHHHHHhc----CCCcEEEEEEcCCCcccccccchhccCCCHHH
Confidence 8432 11 111112 245677777776 9999999987765432 25666
Q ss_pred HHHHHHhCC-cEEeec
Q 010971 324 IDYALKKRD-VKLVPC 338 (496)
Q Consensus 324 V~~~L~~~~-~~lv~~ 338 (496)
+..+++..+ ++++.+
T Consensus 164 ~~~~l~~aG~f~~~~~ 179 (211)
T 3e23_A 164 LRARYAEAGTWASVAV 179 (211)
T ss_dssp HHHHHHHHCCCSEEEE
T ss_pred HHHHHHhCCCcEEEEE
Confidence 777777767 776654
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-09 Score=108.23 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=86.8
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc--CCCeEEEEecCCCCCcccc----CCCC
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--GVTNTIVCNYDGNELPKVL----GLNT 249 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~--g~~nv~v~~~D~~~~~~~~----~~~~ 249 (496)
..++.+|||+|||+|..+..++..+.....|+++|+++..++.+++++... +..++.++..|+..++... ..+.
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 113 (299)
T 3g5t_A 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQK 113 (299)
T ss_dssp CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSC
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCC
Confidence 458999999999999999999987755689999999999999999999987 3467999999998876321 1168
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
||+|++... + .+. . ...+|..+.++| +|||+|++.+++
T Consensus 114 fD~V~~~~~------l------~~~-~----------~~~~l~~~~~~L----kpgG~l~i~~~~ 151 (299)
T 3g5t_A 114 IDMITAVEC------A------HWF-D----------FEKFQRSAYANL----RKDGTIAIWGYA 151 (299)
T ss_dssp EEEEEEESC------G------GGS-C----------HHHHHHHHHHHE----EEEEEEEEEEEE
T ss_pred eeEEeHhhH------H------HHh-C----------HHHHHHHHHHhc----CCCcEEEEEecC
Confidence 999998432 1 111 1 234677777776 999999886554
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.99 E-value=6e-09 Score=108.44 Aligned_cols=107 Identities=12% Similarity=0.102 Sum_probs=84.5
Q ss_pred CCCcccccccEEEeCCcch---hHH---HhcCCCCCCeEeeccCCCchHHHHHHHHcCC---------------------
Q 010971 150 GATPEYMAGFYMLQSASSF---LPV---MALAPQEKERVIDMAAAPGGKTTYIAALMKN--------------------- 202 (496)
Q Consensus 150 ~~~~~~~~G~~~iQd~sS~---l~v---~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~--------------------- 202 (496)
...+.++.|+...|..+.+ ++. .++...++.+|||.|||+|+.++.+|....+
T Consensus 161 sG~~l~krgyr~~~~~Apl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~ 240 (385)
T 3ldu_A 161 TGDALHKRGYREKANKAPIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKI 240 (385)
T ss_dssp CCSCTTCCSCCCC--CCCCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHH
T ss_pred CCChhhhcccccCCCCCCCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHH
Confidence 3456788888877766543 222 3345678999999999999999988876532
Q ss_pred ----------------CcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEEECCCC
Q 010971 203 ----------------TGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 203 ----------------~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VLlDaPC 259 (496)
...|+++|+++..++.++.|+..+|+. ++.+.+.|+..++. ...||+|++|||.
T Consensus 241 w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~---~~~~D~Iv~NPPy 311 (385)
T 3ldu_A 241 WWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS---EDEFGFIITNPPY 311 (385)
T ss_dssp HHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC---SCBSCEEEECCCC
T ss_pred HHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc---CCCCcEEEECCCC
Confidence 147999999999999999999999997 59999999988753 2589999999994
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=4.3e-10 Score=111.87 Aligned_cols=113 Identities=15% Similarity=0.211 Sum_probs=84.9
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc--CC---------CeEEEEecCCCCCcccc
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--GV---------TNTIVCNYDGNELPKVL 245 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~--g~---------~nv~v~~~D~~~~~~~~ 245 (496)
..+.+|||+|||+|+.+..++.. +.+.|+++|+++..++.+++++ .+ ++ .++.++..|+..+...
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~- 149 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN- 149 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-
Confidence 45689999999999999988876 4479999999999999999998 55 33 4689999998765322
Q ss_pred CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 246 ~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
.+.||+|++|+|+. .|. + .. + .+.+++..+.+.| +|||.|+..+++..
T Consensus 150 -~~~fD~Ii~d~~~~-~~~----~--------~~---l--~~~~~l~~~~~~L----~pgG~lv~~~~~~~ 197 (281)
T 1mjf_A 150 -NRGFDVIIADSTDP-VGP----A--------KV---L--FSEEFYRYVYDAL----NNPGIYVTQAGSVY 197 (281)
T ss_dssp -CCCEEEEEEECCCC-C--------------------T--TSHHHHHHHHHHE----EEEEEEEEEEEETT
T ss_pred -cCCeeEEEECCCCC-CCc----c--------hh---h--hHHHHHHHHHHhc----CCCcEEEEEcCCcc
Confidence 37899999999862 120 0 00 0 1245677777776 99999999887754
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.3e-09 Score=103.37 Aligned_cols=131 Identities=13% Similarity=0.172 Sum_probs=98.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
++.+|||+|||+|..+..++.. ...|+++|+++..++.+++++...|+ .++.++..|+..++.. ..+.||+|++.
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~fD~v~~~ 143 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH-LETPVDLILFH 143 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG-CSSCEEEEEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh-cCCCceEEEEC
Confidence 4789999999999999999886 36899999999999999999999999 5799999999887643 34789999985
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC--------------------
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM-------------------- 316 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~-------------------- 316 (496)
.. +..-++ ...+|..+.++| +|||+|+.++....
T Consensus 144 ~~------l~~~~~----------------~~~~l~~~~~~L----kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (285)
T 4htf_A 144 AV------LEWVAD----------------PRSVLQTLWSVL----RPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMP 197 (285)
T ss_dssp SC------GGGCSC----------------HHHHHHHHHHTE----EEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCC
T ss_pred ch------hhcccC----------------HHHHHHHHHHHc----CCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhcc
Confidence 32 211111 134677777776 99999998875311
Q ss_pred ----------CcCCHHHHHHHHHhCCcEEeec
Q 010971 317 ----------VTENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 317 ----------~eENE~vV~~~L~~~~~~lv~~ 338 (496)
..=..+.+..+|+..+++++..
T Consensus 198 ~~~~~~~~~~~~~~~~~l~~~l~~aGf~v~~~ 229 (285)
T 4htf_A 198 KKKKRTLSPDYPRDPTQVYLWLEEAGWQIMGK 229 (285)
T ss_dssp CC----CCCSCCBCHHHHHHHHHHTTCEEEEE
T ss_pred ccccccCCCCCCCCHHHHHHHHHHCCCceeee
Confidence 1113456667777888887754
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-09 Score=102.22 Aligned_cols=109 Identities=12% Similarity=0.133 Sum_probs=82.2
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEE
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
+.+.++.+|||+|||+|..+..++.. ...|+++|+++..++.+++++. .++.++..|+..++. . +.||+|
T Consensus 41 ~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~--~-~~fD~v 110 (220)
T 3hnr_A 41 VVNKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEV--P-TSIDTI 110 (220)
T ss_dssp HHHTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCC--C-SCCSEE
T ss_pred hhccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCC--C-CCeEEE
Confidence 44568899999999999999998886 3689999999999999888765 567889999988763 2 789999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
++... +.. .... .+..+|..+.++| +|||+|+.++....
T Consensus 111 ~~~~~------l~~-------~~~~-------~~~~~l~~~~~~L----kpgG~l~i~~~~~~ 149 (220)
T 3hnr_A 111 VSTYA------FHH-------LTDD-------EKNVAIAKYSQLL----NKGGKIVFADTIFA 149 (220)
T ss_dssp EEESC------GGG-------SCHH-------HHHHHHHHHHHHS----CTTCEEEEEEECBS
T ss_pred EECcc------hhc-------CChH-------HHHHHHHHHHHhc----CCCCEEEEEecccc
Confidence 98532 111 1111 1134677777775 99999999875543
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-09 Score=100.68 Aligned_cols=123 Identities=11% Similarity=0.082 Sum_probs=87.7
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
+.++.+|||+|||+|..+..++... ...|+++|+++..++.+++++.. ..++.+...|+..++ +..+.||+|++
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~--~~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~--~~~~~fD~v~~ 113 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGG--FPNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLD--FPSASFDVVLE 113 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTT--CCCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCC--SCSSCEEEEEE
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcC--CCcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCC--CCCCcccEEEE
Confidence 3678999999999999999888762 23899999999999999998864 357888899998774 33478999998
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
..+.... ...++ ..|....... .....+|..+.++| +|||++++++++.
T Consensus 114 ~~~~~~~--~~~~~-~~~~~~~~~~----~~~~~~l~~~~~~L----kpgG~li~~~~~~ 162 (215)
T 2pxx_A 114 KGTLDAL--LAGER-DPWTVSSEGV----HTVDQVLSEVSRVL----VPGGRFISMTSAA 162 (215)
T ss_dssp ESHHHHH--TTTCS-CTTSCCHHHH----HHHHHHHHHHHHHE----EEEEEEEEEESCC
T ss_pred Ccchhhh--ccccc-cccccccchh----HHHHHHHHHHHHhC----cCCCEEEEEeCCC
Confidence 6652111 00010 1222222222 23356788888876 9999999988764
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-09 Score=103.86 Aligned_cols=134 Identities=10% Similarity=0.056 Sum_probs=97.8
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.++.+|||+|||+|..+..++... ...|+++|+++..++.+++++...+..++.++..|+..++. ..+.||+|+++
T Consensus 78 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~~fD~v~~~ 153 (241)
T 2ex4_A 78 TGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP--EPDSYDVIWIQ 153 (241)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC--CSSCEEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCC--CCCCEEEEEEc
Confidence 368999999999999998887764 35899999999999999999988876678899999877653 23689999985
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC-----------cCCHHHHH
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV-----------TENEAVID 325 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~-----------eENE~vV~ 325 (496)
.. +.. .... ....+|..+.++| +|||+|++++..... .-+.+.+.
T Consensus 154 ~~------l~~-------~~~~-------~~~~~l~~~~~~L----kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (241)
T 2ex4_A 154 WV------IGH-------LTDQ-------HLAEFLRRCKGSL----RPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVR 209 (241)
T ss_dssp SC------GGG-------SCHH-------HHHHHHHHHHHHE----EEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHH
T ss_pred ch------hhh-------CCHH-------HHHHHHHHHHHhc----CCCeEEEEEEccCCCcceecccCCcccCCHHHHH
Confidence 32 111 1111 1245677777776 999999997754321 01456667
Q ss_pred HHHHhCCcEEeec
Q 010971 326 YALKKRDVKLVPC 338 (496)
Q Consensus 326 ~~L~~~~~~lv~~ 338 (496)
.+++..+++++..
T Consensus 210 ~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 210 RIICSAGLSLLAE 222 (241)
T ss_dssp HHHHHTTCCEEEE
T ss_pred HHHHHcCCeEEEe
Confidence 7777777776654
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.2e-09 Score=105.48 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=85.3
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcC
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD 251 (496)
..+...++.+|||+|||+|..+..++.. ...|+++|+++..++.+++++...|+ ++.+...|+..++. .+.||
T Consensus 114 ~~~~~~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~---~~~fD 186 (286)
T 3m70_A 114 DAAKIISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI---QENYD 186 (286)
T ss_dssp HHHHHSCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC---CSCEE
T ss_pred HHhhccCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc---cCCcc
Confidence 3344457899999999999999999886 25899999999999999999999998 89999999987653 37899
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+|++..+..- .+.. ....+|..+.++| +|||++++.+
T Consensus 187 ~i~~~~~~~~-------------~~~~-------~~~~~l~~~~~~L----kpgG~l~i~~ 223 (286)
T 3m70_A 187 FIVSTVVFMF-------------LNRE-------RVPSIIKNMKEHT----NVGGYNLIVA 223 (286)
T ss_dssp EEEECSSGGG-------------SCGG-------GHHHHHHHHHHTE----EEEEEEEEEE
T ss_pred EEEEccchhh-------------CCHH-------HHHHHHHHHHHhc----CCCcEEEEEE
Confidence 9998664211 1111 1234677777776 9999976643
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=3.1e-09 Score=104.08 Aligned_cols=113 Identities=12% Similarity=0.132 Sum_probs=86.8
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
+.++.+|||+|||+|..+..++.. +.+.|+++|+++..+..+++++...|. .++.++..|+..++.. ..+.||+|+
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~fD~v~ 138 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-LGKEFDVIS 138 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-CSSCEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC-CCCCcCEEE
Confidence 467899999999999999988775 345899999999999999999999887 4689999999876531 247899999
Q ss_pred ECCCCCCCCcccCCchhhcc-CCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 255 LDAPCSGTGVISKDESVKTS-KSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~-~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
+... +. +. .+.. ....+|..+.++| +|||+|+.+++.
T Consensus 139 ~~~~------l~------~~~~~~~-------~~~~~l~~~~~~L----kpgG~l~~~~~~ 176 (298)
T 1ri5_A 139 SQFS------FH------YAFSTSE-------SLDIAQRNIARHL----RPGGYFIMTVPS 176 (298)
T ss_dssp EESC------GG------GGGSSHH-------HHHHHHHHHHHTE----EEEEEEEEEEEC
T ss_pred ECch------hh------hhcCCHH-------HHHHHHHHHHHhc----CCCCEEEEEECC
Confidence 8532 10 00 1111 2345677777776 999999998866
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-09 Score=105.65 Aligned_cols=121 Identities=14% Similarity=0.125 Sum_probs=87.6
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHH------HHHHHHHHHHHcCC-CeEEEEecC---C
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKAS------RLKSLTANLHRMGV-TNTIVCNYD---G 238 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~------rl~~l~~nl~r~g~-~nv~v~~~D---~ 238 (496)
.....+.+.+|.+|||+|||+|..+.+++...+..+.|+++|+++. .++.+++++...|+ .++.+...| .
T Consensus 34 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 113 (275)
T 3bkx_A 34 AIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSD 113 (275)
T ss_dssp HHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTT
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhh
Confidence 3345567889999999999999999999998755579999999997 89999999999988 479999988 3
Q ss_pred CCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 239 NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 239 ~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
..++ +..+.||+|++..+ +..-+ .+ ..++..... + ++|||+|+.++.+...
T Consensus 114 ~~~~--~~~~~fD~v~~~~~------l~~~~------~~----------~~~~~~~~~-l---~~~gG~l~~~~~~~~~ 164 (275)
T 3bkx_A 114 DLGP--IADQHFDRVVLAHS------LWYFA------SA----------NALALLFKN-M---AAVCDHVDVAEWSMQP 164 (275)
T ss_dssp CCGG--GTTCCCSEEEEESC------GGGSS------CH----------HHHHHHHHH-H---TTTCSEEEEEEECSSC
T ss_pred ccCC--CCCCCEEEEEEccc------hhhCC------CH----------HHHHHHHHH-H---hCCCCEEEEEEecCCC
Confidence 3333 33478999997543 11111 11 112333333 3 3779999998877643
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=8e-10 Score=106.38 Aligned_cols=114 Identities=14% Similarity=0.124 Sum_probs=81.9
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCC-HHHHHHH---HHHHHHcCCCeEEEEecCCCCCccccCCCCcC
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMK-ASRLKSL---TANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s-~~rl~~l---~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD 251 (496)
.+++.+|||+|||+|..+..++... ..+.|+++|+| +..++.+ ++++.+.|+.|+.+...|+..++..+. ..||
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~-d~v~ 99 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELK-NIAD 99 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGT-TCEE
T ss_pred CCCCCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhcc-CeEE
Confidence 4689999999999999999998764 34789999999 5545444 888888999999999999998865332 5677
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
.|.+..| |.. ...........+|..+.++| ||||+|+.++
T Consensus 100 ~i~~~~~----------------~~~-~~~~~~~~~~~~l~~~~r~L----kpGG~l~i~~ 139 (225)
T 3p2e_A 100 SISILFP----------------WGT-LLEYVIKPNRDILSNVADLA----KKEAHFEFVT 139 (225)
T ss_dssp EEEEESC----------------CHH-HHHHHHTTCHHHHHHHHTTE----EEEEEEEEEE
T ss_pred EEEEeCC----------------CcH-HhhhhhcchHHHHHHHHHhc----CCCcEEEEEE
Confidence 7877665 111 01111111234566666665 9999999844
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-09 Score=106.83 Aligned_cols=113 Identities=17% Similarity=0.147 Sum_probs=85.7
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEecCCCCCccccCCCCc
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV---TNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~---~nv~v~~~D~~~~~~~~~~~~f 250 (496)
+.+.+ .+|||+|||+|..+..++.. ...|+++|+++..++.+++++...++ .++.++..|+..++. .+.|
T Consensus 79 ~~~~~-~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~f 151 (299)
T 3g2m_A 79 TGPVS-GPVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL---DKRF 151 (299)
T ss_dssp HCCCC-SCEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC---SCCE
T ss_pred hCCCC-CcEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc---CCCc
Confidence 34444 49999999999999988876 35899999999999999999998886 579999999998763 3789
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
|.|++... ++ ...+.. .+..+|..+.++| +|||+|++++....
T Consensus 152 D~v~~~~~-----~~-------~~~~~~-------~~~~~l~~~~~~L----~pgG~l~~~~~~~~ 194 (299)
T 3g2m_A 152 GTVVISSG-----SI-------NELDEA-------DRRGLYASVREHL----EPGGKFLLSLAMSE 194 (299)
T ss_dssp EEEEECHH-----HH-------TTSCHH-------HHHHHHHHHHHHE----EEEEEEEEEEECCH
T ss_pred CEEEECCc-----cc-------ccCCHH-------HHHHHHHHHHHHc----CCCcEEEEEeecCc
Confidence 99986211 00 011221 2345677777776 99999999987753
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-09 Score=109.96 Aligned_cols=125 Identities=18% Similarity=0.119 Sum_probs=84.4
Q ss_pred cCCCCCCeEeeccC------CCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEE-EecCCCCCccccC
Q 010971 174 LAPQEKERVIDMAA------APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIV-CNYDGNELPKVLG 246 (496)
Q Consensus 174 L~~~~g~~VLDmcA------gpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v-~~~D~~~~~~~~~ 246 (496)
+.+.+|.+|||+|| |||+ ..++.+++..+.|+|+|+++. +.++.+ +.+|+..++.
T Consensus 59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~~v~~~i~gD~~~~~~--- 120 (290)
T 2xyq_A 59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VSDADSTLIGDCATVHT--- 120 (290)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BCSSSEEEESCGGGCCC---
T ss_pred cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CCCCEEEEECccccCCc---
Confidence 46788999999999 7788 566777776689999999987 246777 8999987642
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~ 326 (496)
.+.||+|++|+++..+|....+... . ..+...+|..+.+.| +|||.|+..+-.. ...++ +..
T Consensus 121 ~~~fD~Vvsn~~~~~~g~~~~d~~~----~-------~~l~~~~l~~a~r~L----kpGG~~v~~~~~~--~~~~~-l~~ 182 (290)
T 2xyq_A 121 ANKWDLIISDMYDPRTKHVTKENDS----K-------EGFFTYLCGFIKQKL----ALGGSIAVKITEH--SWNAD-LYK 182 (290)
T ss_dssp SSCEEEEEECCCCCC---CCSCCCC----C-------CTHHHHHHHHHHHHE----EEEEEEEEEECSS--SCCHH-HHH
T ss_pred cCcccEEEEcCCccccccccccccc----h-------HHHHHHHHHHHHHhc----CCCcEEEEEEecc--CCHHH-HHH
Confidence 2679999999887777765432110 0 112245677777776 9999999865332 33343 444
Q ss_pred HHHhCCcE
Q 010971 327 ALKKRDVK 334 (496)
Q Consensus 327 ~L~~~~~~ 334 (496)
+++..++.
T Consensus 183 ~l~~~GF~ 190 (290)
T 2xyq_A 183 LMGHFSWW 190 (290)
T ss_dssp HHTTEEEE
T ss_pred HHHHcCCc
Confidence 55554444
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.4e-09 Score=108.22 Aligned_cols=117 Identities=15% Similarity=0.067 Sum_probs=82.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-----------------------------
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV----------------------------- 228 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~----------------------------- 228 (496)
++.+|||+|||+|..+..|+..++. ..|+++|+++..++.+++++..++.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~-~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGP-SRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCC-SEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 6899999999999999999998754 6999999999999999999877653
Q ss_pred -----------------------------CeEEEEecCCCCCccc---cCCCCcCEEEECCCCCCCCcccCCchhhccCC
Q 010971 229 -----------------------------TNTIVCNYDGNELPKV---LGLNTVDRVLLDAPCSGTGVISKDESVKTSKS 276 (496)
Q Consensus 229 -----------------------------~nv~v~~~D~~~~~~~---~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s 276 (496)
.+|.+..+|....+.. +..+.||+|++... + .|-
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~v------l------~~i-- 190 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSL------T------KWV-- 190 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESC------H------HHH--
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChH------H------HHh--
Confidence 3789999998754311 13478999998321 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 277 LEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 277 ~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.+..-.....++|..+.++| +|||+|+..+..+
T Consensus 191 --hl~~~~~~~~~~l~~~~~~L----kpGG~lil~~~~~ 223 (292)
T 3g07_A 191 --HLNWGDEGLKRMFRRIYRHL----RPGGILVLEPQPW 223 (292)
T ss_dssp --HHHHHHHHHHHHHHHHHHHE----EEEEEEEEECCCH
T ss_pred --hhcCCHHHHHHHHHHHHHHh----CCCcEEEEecCCc
Confidence 00001123456788888876 9999999876543
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.95 E-value=7.5e-09 Score=108.07 Aligned_cols=106 Identities=12% Similarity=0.144 Sum_probs=83.6
Q ss_pred CCcccccccEEEeCCcch---hH---HHhcCCCCCCeEeeccCCCchHHHHHHHHcCC----------------------
Q 010971 151 ATPEYMAGFYMLQSASSF---LP---VMALAPQEKERVIDMAAAPGGKTTYIAALMKN---------------------- 202 (496)
Q Consensus 151 ~~~~~~~G~~~iQd~sS~---l~---v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~---------------------- 202 (496)
..+.++.|+-..|..+.+ ++ +.+....++..|||.|||+|+.++.+|.+..+
T Consensus 168 g~~L~krgyr~~~~~Apl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w 247 (393)
T 3k0b_A 168 GAGLHKRGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVW 247 (393)
T ss_dssp SSCTTCCSTTTTSCSCSCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHH
T ss_pred CCcccccccccCCCCCCCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHH
Confidence 445677777655555442 22 23456778999999999999999888776543
Q ss_pred ---------------CcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEEECCCC
Q 010971 203 ---------------TGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 203 ---------------~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLlDaPC 259 (496)
...|+++|+|+..++.++.|+..+|+.+ +.+.+.|+..++. ...||+|++|||+
T Consensus 248 ~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~---~~~fD~Iv~NPPY 317 (393)
T 3k0b_A 248 ADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT---EDEYGVVVANPPY 317 (393)
T ss_dssp HHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC---CCCSCEEEECCCC
T ss_pred HHHHHHHHHhhcccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC---CCCCCEEEECCCC
Confidence 1469999999999999999999999975 8999999988753 2589999999995
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.6e-09 Score=97.53 Aligned_cols=126 Identities=13% Similarity=0.034 Sum_probs=92.7
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaP 258 (496)
+.+|||+|||+|..+..++.. ...|+++|+++..++.++++ ..++.++..|+..++ +..+.||+|++...
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~--~~~~~fD~v~~~~~ 111 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQT-----HPSVTFHHGTITDLS--DSPKRWAGLLAWYS 111 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHH-----CTTSEEECCCGGGGG--GSCCCEEEEEEESS
T ss_pred CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHh-----CCCCeEEeCcccccc--cCCCCeEEEEehhh
Confidence 889999999999999998886 35899999999999988877 346888999998776 33478999998432
Q ss_pred CCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC------------cCCHHHHHH
Q 010971 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV------------TENEAVIDY 326 (496)
Q Consensus 259 CSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~------------eENE~vV~~ 326 (496)
+..-+ .++ ...+|..+.++| +|||+|+.++..... .-....+..
T Consensus 112 ------l~~~~-------~~~-------~~~~l~~~~~~L----~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (203)
T 3h2b_A 112 ------LIHMG-------PGE-------LPDALVALRMAV----EDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQ 167 (203)
T ss_dssp ------STTCC-------TTT-------HHHHHHHHHHTE----EEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHH
T ss_pred ------HhcCC-------HHH-------HHHHHHHHHHHc----CCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHH
Confidence 11111 111 234677777776 999999998865432 123566777
Q ss_pred HHHhCCcEEeec
Q 010971 327 ALKKRDVKLVPC 338 (496)
Q Consensus 327 ~L~~~~~~lv~~ 338 (496)
+|+..+++++.+
T Consensus 168 ~l~~~Gf~~~~~ 179 (203)
T 3h2b_A 168 ALETAGFQVTSS 179 (203)
T ss_dssp HHHHTTEEEEEE
T ss_pred HHHHCCCcEEEE
Confidence 777878777765
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.93 E-value=8.1e-09 Score=107.53 Aligned_cols=107 Identities=8% Similarity=0.098 Sum_probs=83.4
Q ss_pred CCCcccccccEEEeCCcch---hH---HHhcCCCCCCeEeeccCCCchHHHHHHHHcCC---------------------
Q 010971 150 GATPEYMAGFYMLQSASSF---LP---VMALAPQEKERVIDMAAAPGGKTTYIAALMKN--------------------- 202 (496)
Q Consensus 150 ~~~~~~~~G~~~iQd~sS~---l~---v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~--------------------- 202 (496)
...+.++.||-..|..+.+ ++ +.+....++..|||.|||+|+..+.+|.+..+
T Consensus 160 sg~~LhkRgyr~~~~~Apl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~ 239 (384)
T 3ldg_A 160 TGPSLFKRGYRTEKGGAPIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEAL 239 (384)
T ss_dssp SSSCTTCCSCCCC---CCCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHH
T ss_pred cCCcccccCcccCCCCCCCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHH
Confidence 3446678887766665542 22 23445778999999999999999888776543
Q ss_pred ----------------CcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEEECCCC
Q 010971 203 ----------------TGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 203 ----------------~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLlDaPC 259 (496)
...|+++|+|+..++.++.|+..+|+.+ +.+.+.|+..++. ...||+|++|||+
T Consensus 240 w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~---~~~fD~Iv~NPPY 310 (384)
T 3ldg_A 240 VTRVRNEADEQADYDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT---NKINGVLISNPPY 310 (384)
T ss_dssp HHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC---CCCSCEEEECCCC
T ss_pred HHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc---cCCcCEEEECCch
Confidence 1469999999999999999999999976 9999999988763 2589999999996
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.3e-09 Score=98.70 Aligned_cols=112 Identities=17% Similarity=0.076 Sum_probs=83.6
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
..++.+|||+|||+|..++.++... ...|+++|+|+..++.+++++...+ .++.+...|+..++ +..+.||.|++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~--~~~~~fD~v~~ 95 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVED--GYKTYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLP--FKDESMSFVYS 95 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHT--TCEEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCC--SCTTCEEEEEE
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCC--CCCCceeEEEE
Confidence 4578999999999999865554432 3689999999999999999998877 46778889998776 33478999997
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
... +. .+...+ ...+|..+.+.| +|||++++++++..
T Consensus 96 ~~~------l~-------~~~~~~-------~~~~l~~~~~~L----kpgG~l~~~~~~~~ 132 (209)
T 2p8j_A 96 YGT------IF-------HMRKND-------VKEAIDEIKRVL----KPGGLACINFLTTK 132 (209)
T ss_dssp CSC------GG-------GSCHHH-------HHHHHHHHHHHE----EEEEEEEEEEEETT
T ss_pred cCh------HH-------hCCHHH-------HHHHHHHHHHHc----CCCcEEEEEEeccc
Confidence 422 11 111122 345677777776 99999999988753
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.3e-09 Score=98.11 Aligned_cols=133 Identities=14% Similarity=0.088 Sum_probs=90.3
Q ss_pred hHHHhcCC--CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccC
Q 010971 169 LPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 169 l~v~~L~~--~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~ 246 (496)
+.+..+.. .++.+|||+|||+|..+..++... .|+|+|+|+..++. ..++.+.++|+.... .
T Consensus 12 ~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~~---~ 75 (170)
T 3q87_B 12 TLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES---------HRGGNLVRADLLCSI---N 75 (170)
T ss_dssp HHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT---------CSSSCEEECSTTTTB---C
T ss_pred HHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc---------ccCCeEEECChhhhc---c
Confidence 33444544 678899999999999999887653 89999999999887 456788899987632 2
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~ 326 (496)
.+.||.|++++|.....-.. . +.-... ...++...++. + |||++++++.+. .+...+..
T Consensus 76 ~~~fD~i~~n~~~~~~~~~~----~-~~~~~~--------~~~~~~~~~~~----l-pgG~l~~~~~~~---~~~~~l~~ 134 (170)
T 3q87_B 76 QESVDVVVFNPPYVPDTDDP----I-IGGGYL--------GREVIDRFVDA----V-TVGMLYLLVIEA---NRPKEVLA 134 (170)
T ss_dssp GGGCSEEEECCCCBTTCCCT----T-TBCCGG--------GCHHHHHHHHH----C-CSSEEEEEEEGG---GCHHHHHH
T ss_pred cCCCCEEEECCCCccCCccc----c-ccCCcc--------hHHHHHHHHhh----C-CCCEEEEEEecC---CCHHHHHH
Confidence 36899999999964322110 0 100101 12245555554 3 999999887654 45566667
Q ss_pred HHHhCCcEEeec
Q 010971 327 ALKKRDVKLVPC 338 (496)
Q Consensus 327 ~L~~~~~~lv~~ 338 (496)
+++..+++.+.+
T Consensus 135 ~l~~~gf~~~~~ 146 (170)
T 3q87_B 135 RLEERGYGTRIL 146 (170)
T ss_dssp HHHHTTCEEEEE
T ss_pred HHHHCCCcEEEE
Confidence 777778776654
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.92 E-value=9.1e-09 Score=98.96 Aligned_cols=110 Identities=13% Similarity=0.102 Sum_probs=82.5
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcC
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD 251 (496)
..+...++.+|||+|||+|..+..++... ...|+++|+++..++.+++++. ..++.+...|+..++ +..+.||
T Consensus 38 ~~~~~~~~~~vLD~GcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~--~~~~~fD 110 (253)
T 3g5l_A 38 KMLPDFNQKTVLDLGCGFGWHCIYAAEHG--AKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIA--IEPDAYN 110 (253)
T ss_dssp TTCCCCTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCC--CCTTCEE
T ss_pred HhhhccCCCEEEEECCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCC--CCCCCeE
Confidence 33455689999999999999999998863 2389999999999999888765 457889999988776 3347899
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
+|++... +..-++ ...+|..+.++| +|||+|++++.+
T Consensus 111 ~v~~~~~------l~~~~~----------------~~~~l~~~~~~L----kpgG~l~~~~~~ 147 (253)
T 3g5l_A 111 VVLSSLA------LHYIAS----------------FDDICKKVYINL----KSSGSFIFSVEH 147 (253)
T ss_dssp EEEEESC------GGGCSC----------------HHHHHHHHHHHE----EEEEEEEEEEEC
T ss_pred EEEEchh------hhhhhh----------------HHHHHHHHHHHc----CCCcEEEEEeCC
Confidence 9998421 111111 134677777776 999999998543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=98.91 E-value=7.1e-09 Score=98.60 Aligned_cols=129 Identities=12% Similarity=0.082 Sum_probs=94.7
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
+.++.+|||+|||+|..+..++.. ...|+++|+++..++.++++. ...++.++..|+..++ +..+.||+|++
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~--~~~~~fD~v~~ 122 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLP--FENEQFEAIMA 122 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCS--SCTTCEEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCC--CCCCCccEEEE
Confidence 457899999999999999999886 358999999999999888774 3457889999998876 33478999997
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCc-----------------
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT----------------- 318 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~e----------------- 318 (496)
.. ++..-++ ...+|..+.++| +|||+|+.++......
T Consensus 123 ~~------~l~~~~~----------------~~~~l~~~~~~L----~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (242)
T 3l8d_A 123 IN------SLEWTEE----------------PLRALNEIKRVL----KSDGYACIAILGPTAKPRENSYPRLYGKDVVCN 176 (242)
T ss_dssp ES------CTTSSSC----------------HHHHHHHHHHHE----EEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSC
T ss_pred cC------hHhhccC----------------HHHHHHHHHHHh----CCCeEEEEEEcCCcchhhhhhhhhhcccccccc
Confidence 32 2211111 124677777776 9999999988543221
Q ss_pred -CCHHHHHHHHHhCCcEEeec
Q 010971 319 -ENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 319 -ENE~vV~~~L~~~~~~lv~~ 338 (496)
-....+..++...+++++..
T Consensus 177 ~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 177 TMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp CCCHHHHHHHHHHTTEEEEEE
T ss_pred CCCHHHHHHHHHHcCCEEEEe
Confidence 23345667777888887765
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.4e-09 Score=100.42 Aligned_cols=110 Identities=14% Similarity=0.134 Sum_probs=83.9
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
...+.+.++.+|||+|||+|..+..++...+ .+.|+++|+++..++.++++ ..++.+...|+..++ . .+.|
T Consensus 26 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~-~--~~~f 96 (259)
T 2p35_A 26 LAQVPLERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATWK-P--AQKA 96 (259)
T ss_dssp HTTCCCSCCSSEEEETCTTTHHHHHHHHHHC-TTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCC-C--SSCE
T ss_pred HHhcCCCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcC-c--cCCc
Confidence 4445667899999999999999999999874 47899999999999998887 357888999998876 2 3789
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
|+|++... +. +.. ....+|..+.++| +|||+|+.++...
T Consensus 97 D~v~~~~~------l~------~~~----------~~~~~l~~~~~~L----~pgG~l~~~~~~~ 135 (259)
T 2p35_A 97 DLLYANAV------FQ------WVP----------DHLAVLSQLMDQL----ESGGVLAVQMPDN 135 (259)
T ss_dssp EEEEEESC------GG------GST----------THHHHHHHHGGGE----EEEEEEEEEEECC
T ss_pred CEEEEeCc------hh------hCC----------CHHHHHHHHHHhc----CCCeEEEEEeCCC
Confidence 99998432 11 110 1234577777765 9999999988543
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.7e-09 Score=107.92 Aligned_cols=113 Identities=12% Similarity=0.098 Sum_probs=84.6
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcCE
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
+...++.+|||+|||+|..+..+++. +.+.|+|+|+++ .++.+++++...|+ .++.++..|+..++ ++.+.||+
T Consensus 60 ~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~ 134 (340)
T 2fyt_A 60 PHIFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVH--LPVEKVDV 134 (340)
T ss_dssp GGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC--CSCSCEEE
T ss_pred hhhcCCCEEEEeeccCcHHHHHHHHc--CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhc--CCCCcEEE
Confidence 44567899999999999999988876 346899999996 89999999999998 57999999998875 33368999
Q ss_pred EEECCC-CCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 253 VLLDAP-CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 253 VLlDaP-CSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
|+++.. +... .... ...+|..+.++| +|||.|+.+.|++
T Consensus 135 Ivs~~~~~~l~-------------~~~~-------~~~~l~~~~~~L----kpgG~lip~~~~~ 174 (340)
T 2fyt_A 135 IISEWMGYFLL-------------FESM-------LDSVLYAKNKYL----AKGGSVYPDICTI 174 (340)
T ss_dssp EEECCCBTTBT-------------TTCH-------HHHHHHHHHHHE----EEEEEEESCEEEE
T ss_pred EEEcCchhhcc-------------CHHH-------HHHHHHHHHhhc----CCCcEEEcccceE
Confidence 998752 1110 0011 123566666665 9999999555543
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-09 Score=116.42 Aligned_cols=158 Identities=17% Similarity=0.180 Sum_probs=107.0
Q ss_pred chhHHHhcC----CCCCCeEeeccCCCchHHHHHHHHcCC--CcEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEecCC
Q 010971 167 SFLPVMALA----PQEKERVIDMAAAPGGKTTYIAALMKN--TGLIYANEMKASRLKSLTANLHRMGV--TNTIVCNYDG 238 (496)
Q Consensus 167 S~l~v~~L~----~~~g~~VLDmcAgpGgKT~~lA~l~~~--~g~V~A~D~s~~rl~~l~~nl~r~g~--~nv~v~~~D~ 238 (496)
+.+.+.++. +.++.+|||.|||+|+..+.++..+.. ...|+|+|+++..+..++.|+...|+ .++.+.++|.
T Consensus 206 v~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDt 285 (542)
T 3lkd_A 206 AKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADT 285 (542)
T ss_dssp HHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCT
T ss_pred HHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecce
Confidence 445555555 678999999999999999988888742 46899999999999999999999998 5688899998
Q ss_pred CCC--ccccCCCCcCEEEECCCCCCCCccc----CCchhh-cc-CCHHHHHHHHHHHHHHHHHHHHhhhhcCC-CCcEEE
Q 010971 239 NEL--PKVLGLNTVDRVLLDAPCSGTGVIS----KDESVK-TS-KSLEDIQKCSYLQKQLILAAIDMVDANSK-SGGYIV 309 (496)
Q Consensus 239 ~~~--~~~~~~~~fD~VLlDaPCSg~G~i~----r~p~~k-~~-~s~~~i~~l~~lQ~~LL~~A~~~l~~~lk-pGG~LV 309 (496)
... |. .....||+|+.+||.++..-.. .++... +. ..+. ...+...+.+++..| + +||+++
T Consensus 286 L~~d~p~-~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~-----s~~~~~Fl~~~l~~L----k~~gGr~a 355 (542)
T 3lkd_A 286 LDEDWPT-QEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPK-----SKADFAFLLHGYYHL----KQDNGVMA 355 (542)
T ss_dssp TTSCSCC-SSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCT-----TCCHHHHHHHHHHTB----CTTTCEEE
T ss_pred ecccccc-cccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCC-----chhhHHHHHHHHHHh----CCCceeEE
Confidence 765 33 2347899999999998542111 111110 10 1000 111234788888886 9 999987
Q ss_pred EEeCC-CCCcCC-HH-HHHHHHHhCCcE
Q 010971 310 YSTCS-IMVTEN-EA-VIDYALKKRDVK 334 (496)
Q Consensus 310 YSTCS-i~~eEN-E~-vV~~~L~~~~~~ 334 (496)
+.+-. ++...+ +. +-++++++..+.
T Consensus 356 ~VlP~g~Lf~~~~~~~iRk~Lle~~~l~ 383 (542)
T 3lkd_A 356 IVLPHGVLFRGNAEGTIRKALLEEGAID 383 (542)
T ss_dssp EEEETHHHHCCTHHHHHHHHHHHTTCEE
T ss_pred EEecchHhhCCchhHHHHHHHHhCCcee
Confidence 76543 322233 34 445666665543
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.90 E-value=6.8e-09 Score=109.72 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=82.1
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHH-------HHHHHHcC--CCeEEEEecCCCCCc
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSL-------TANLHRMG--VTNTIVCNYDGNELP 242 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l-------~~nl~r~g--~~nv~v~~~D~~~~~ 242 (496)
..+.+.+|.+|||+|||+|..+..+|...+ .+.|+++|+++..++.+ +.++..+| +.++.++.+|....+
T Consensus 236 ~~l~l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~ 314 (433)
T 1u2z_A 236 QQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDN 314 (433)
T ss_dssp HHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTC
T ss_pred HhcCCCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccc
Confidence 446778999999999999999999999874 35899999999998888 89999999 578999887654321
Q ss_pred ccc--CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 243 KVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 243 ~~~--~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
..+ ....||+|+++..+. . .++ ...|..+.+. |+|||+||.+
T Consensus 315 ~~~~~~~~~FDvIvvn~~l~---------------~-~d~-------~~~L~el~r~----LKpGG~lVi~ 358 (433)
T 1u2z_A 315 NRVAELIPQCDVILVNNFLF---------------D-EDL-------NKKVEKILQT----AKVGCKIISL 358 (433)
T ss_dssp HHHHHHGGGCSEEEECCTTC---------------C-HHH-------HHHHHHHHTT----CCTTCEEEES
T ss_pred cccccccCCCCEEEEeCccc---------------c-ccH-------HHHHHHHHHh----CCCCeEEEEe
Confidence 100 126799999864321 0 111 1235555555 4999999875
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-08 Score=91.20 Aligned_cols=106 Identities=14% Similarity=0.218 Sum_probs=79.8
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcC
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD 251 (496)
..+.+.++.+|||+|||+|..+..++... ..|+++|+++..++.++++ ..++.+...| ++ +..+.||
T Consensus 11 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d---~~--~~~~~~D 77 (170)
T 3i9f_A 11 PNIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK-----FDSVITLSDP---KE--IPDNSVD 77 (170)
T ss_dssp HHHHSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH-----CTTSEEESSG---GG--SCTTCEE
T ss_pred HhcCcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh-----CCCcEEEeCC---CC--CCCCceE
Confidence 34456789999999999999999888865 4899999999999999888 4578888888 32 2347899
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
+|++.... ..-++ ...+|..+.+.| +|||+++.++....
T Consensus 78 ~v~~~~~l------~~~~~----------------~~~~l~~~~~~L----~pgG~l~~~~~~~~ 116 (170)
T 3i9f_A 78 FILFANSF------HDMDD----------------KQHVISEVKRIL----KDDGRVIIIDWRKE 116 (170)
T ss_dssp EEEEESCS------TTCSC----------------HHHHHHHHHHHE----EEEEEEEEEEECSS
T ss_pred EEEEccch------hcccC----------------HHHHHHHHHHhc----CCCCEEEEEEcCcc
Confidence 99975331 11111 134677777776 99999999876543
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.90 E-value=6.6e-09 Score=99.01 Aligned_cols=131 Identities=11% Similarity=0.033 Sum_probs=96.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
++.+|||+|||+|..+..++. ....|+++|+++..++.+++++...+. .++.+...|+..++. ...||+|++.
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~fD~v~~~ 139 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMAS---PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP---TELFDLIFDY 139 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC---SSCEEEEEEE
T ss_pred CCCCEEEeCCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC---CCCeeEEEEC
Confidence 345999999999999987765 346899999999999999999987654 569999999988752 3689999973
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCc-------CCHHHHHHHHH
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT-------ENEAVIDYALK 329 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~e-------ENE~vV~~~L~ 329 (496)
.. +.. ....+ ...+|..+.++| +|||+|+..+.+.... -..+.+..++.
T Consensus 140 ~~------l~~-------~~~~~-------~~~~l~~~~~~L----kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 195 (235)
T 3lcc_A 140 VF------FCA-------IEPEM-------RPAWAKSMYELL----KPDGELITLMYPITDHVGGPPYKVDVSTFEEVLV 195 (235)
T ss_dssp SS------TTT-------SCGGG-------HHHHHHHHHHHE----EEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHG
T ss_pred hh------hhc-------CCHHH-------HHHHHHHHHHHC----CCCcEEEEEEecccccCCCCCccCCHHHHHHHHH
Confidence 22 111 11111 234677777776 9999999877665432 24667777888
Q ss_pred hCCcEEeec
Q 010971 330 KRDVKLVPC 338 (496)
Q Consensus 330 ~~~~~lv~~ 338 (496)
..+|+++.+
T Consensus 196 ~~Gf~~~~~ 204 (235)
T 3lcc_A 196 PIGFKAVSV 204 (235)
T ss_dssp GGTEEEEEE
T ss_pred HcCCeEEEE
Confidence 878877664
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.90 E-value=2e-09 Score=102.56 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=85.5
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCC-CCccccC-CCCcCEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN-ELPKVLG-LNTVDRV 253 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~-~~~~~~~-~~~fD~V 253 (496)
+.++.+|||+|||+|..+.+++.. ...|+++|+++..++.++++ ..++.++..|+. .++ +. .+.||+|
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~--~~~~~~fD~v 115 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN-----APHADVYEWNGKGELP--AGLGAPFGLI 115 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCC--TTCCCCEEEE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccC--CcCCCCEEEE
Confidence 467899999999999999988876 36999999999999999888 457889999984 444 22 4789999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCc
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDV 333 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~ 333 (496)
++... +..+|..+.++| +|||+|+..... .+...+...+...++
T Consensus 116 ~~~~~----------------------------~~~~l~~~~~~L----kpgG~l~~~~~~----~~~~~~~~~l~~~Gf 159 (226)
T 3m33_A 116 VSRRG----------------------------PTSVILRLPELA----APDAHFLYVGPR----LNVPEVPERLAAVGW 159 (226)
T ss_dssp EEESC----------------------------CSGGGGGHHHHE----EEEEEEEEEESS----SCCTHHHHHHHHTTC
T ss_pred EeCCC----------------------------HHHHHHHHHHHc----CCCcEEEEeCCc----CCHHHHHHHHHHCCC
Confidence 98511 122456666665 999999933222 233456667777776
Q ss_pred EEeec
Q 010971 334 KLVPC 338 (496)
Q Consensus 334 ~lv~~ 338 (496)
..+.+
T Consensus 160 ~~~~~ 164 (226)
T 3m33_A 160 DIVAE 164 (226)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 65543
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.90 E-value=8e-09 Score=102.39 Aligned_cols=132 Identities=16% Similarity=0.178 Sum_probs=82.9
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeC-CHHHHHHHHHHH-----HHcCCC-----eEEEEecCCCCCcccc
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM-KASRLKSLTANL-----HRMGVT-----NTIVCNYDGNELPKVL 245 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~-s~~rl~~l~~nl-----~r~g~~-----nv~v~~~D~~~~~~~~ 245 (496)
.+|.+|||+|||+|..++.++.. +.+.|+++|+ ++..++.++.|+ ...|+. ++.+...|.......+
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~--~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLA--GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHT--TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred cCCCeEEEecccccHHHHHHHHc--CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 57889999999999999887764 3358999999 899999999999 666664 6777765544321111
Q ss_pred ----CCCCcCEEEE-CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCC---C--CcEEEEEeCCC
Q 010971 246 ----GLNTVDRVLL-DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK---S--GGYIVYSTCSI 315 (496)
Q Consensus 246 ----~~~~fD~VLl-DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lk---p--GG~LVYSTCSi 315 (496)
....||+|++ |+... ..+ ...+|..+.++| + | ||.++.+.+..
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~----------------~~~-------~~~ll~~l~~~L----k~~~p~~gG~l~v~~~~~ 208 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSF----------------HQA-------HDALLRSVKMLL----ALPANDPTAVALVTFTHH 208 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSC----------------GGG-------HHHHHHHHHHHB----CCTTTCTTCEEEEEECC-
T ss_pred HhhccCCCCCEEEEeCcccC----------------hHH-------HHHHHHHHHHHh----cccCCCCCCEEEEEEEee
Confidence 2468999987 65521 111 234566666665 8 8 99766544433
Q ss_pred CC---cCCHHHHHHHHHhCC-cEEeec
Q 010971 316 MV---TENEAVIDYALKKRD-VKLVPC 338 (496)
Q Consensus 316 ~~---eENE~vV~~~L~~~~-~~lv~~ 338 (496)
.+ +..+.++. .+...+ +++..+
T Consensus 209 ~~~~~~~~~~~~~-~l~~~G~f~v~~~ 234 (281)
T 3bzb_A 209 RPHLAERDLAFFR-LVNADGALIAEPW 234 (281)
T ss_dssp -------CTHHHH-HHHHSTTEEEEEE
T ss_pred ecccchhHHHHHH-HHHhcCCEEEEEe
Confidence 22 22334443 456677 777654
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-09 Score=114.60 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=69.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc--CCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--GVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~--g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
+|.+|||+|||+|..+++++.. .+.|+++|+|+.+++.++.|++.+ |+.++.++++|+..+........||+|++
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 5899999999999999988765 369999999999999999999999 99889999999987522211257999999
Q ss_pred CCCCCCC
Q 010971 256 DAPCSGT 262 (496)
Q Consensus 256 DaPCSg~ 262 (496)
|||..+.
T Consensus 170 DPPrr~~ 176 (410)
T 3ll7_A 170 DPARRSG 176 (410)
T ss_dssp CCEEC--
T ss_pred CCCCcCC
Confidence 9998774
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.2e-09 Score=103.87 Aligned_cols=91 Identities=19% Similarity=0.080 Sum_probs=73.5
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCH-------HHHHHHHHHHHHcCCCe-EEEEecCC
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA-------SRLKSLTANLHRMGVTN-TIVCNYDG 238 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~-------~rl~~l~~nl~r~g~~n-v~v~~~D~ 238 (496)
..+...++.+.+|.+|||+|||+|..|+.+|.. .+.|+++|+++ ..++.+++|++.+|+.+ +.+++.|+
T Consensus 72 ~~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~ 148 (258)
T 2r6z_A 72 GELIAKAVNHTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNA 148 (258)
T ss_dssp -CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCH
T ss_pred hHHHHHHhCcCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCH
Confidence 345555666677899999999999999999985 36899999999 99999999999988876 99999998
Q ss_pred CCCccccCC--CCcCEEEECCCCC
Q 010971 239 NELPKVLGL--NTVDRVLLDAPCS 260 (496)
Q Consensus 239 ~~~~~~~~~--~~fD~VLlDaPCS 260 (496)
..+...+.. ..||+|++|||..
T Consensus 149 ~~~l~~~~~~~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 149 AEQMPALVKTQGKPDIVYLDPMYP 172 (258)
T ss_dssp HHHHHHHHHHHCCCSEEEECCCC-
T ss_pred HHHHHhhhccCCCccEEEECCCCC
Confidence 765322222 5799999999854
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.6e-08 Score=99.08 Aligned_cols=110 Identities=20% Similarity=0.193 Sum_probs=83.1
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~ 248 (496)
.....+.+.++.+|||+|||+|..+..++. ..+.|+++|+++..++.+++++ .++.+...|+..++. .+
T Consensus 48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~---~~ 116 (279)
T 3ccf_A 48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRV---DK 116 (279)
T ss_dssp HHHHHHCCCTTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCC---SS
T ss_pred HHHHHhCCCCCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCc---CC
Confidence 344566778899999999999999999988 3479999999999999988765 567788899988763 37
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.||+|++... +. +... ...+|..+.++| +|||+|+.++...
T Consensus 117 ~fD~v~~~~~------l~------~~~d----------~~~~l~~~~~~L----kpgG~l~~~~~~~ 157 (279)
T 3ccf_A 117 PLDAVFSNAM------LH------WVKE----------PEAAIASIHQAL----KSGGRFVAEFGGK 157 (279)
T ss_dssp CEEEEEEESC------GG------GCSC----------HHHHHHHHHHHE----EEEEEEEEEEECT
T ss_pred CcCEEEEcch------hh------hCcC----------HHHHHHHHHHhc----CCCcEEEEEecCC
Confidence 8999997432 11 1011 124577777776 9999999877543
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=98.87 E-value=7.5e-09 Score=101.17 Aligned_cols=140 Identities=14% Similarity=0.069 Sum_probs=88.7
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC--C------------------------
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG--V------------------------ 228 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g--~------------------------ 228 (496)
.+.+|.+|||+|||+|..+..++.. +...|+|+|+|+..++.++++++... +
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE 129 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHH
Confidence 4567899999999999877654433 22479999999999999998876532 1
Q ss_pred ---CeEE-EEecCCCCCccc--cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 010971 229 ---TNTI-VCNYDGNELPKV--LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANS 302 (496)
Q Consensus 229 ---~nv~-v~~~D~~~~~~~--~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~l 302 (496)
.++. +...|....... ...+.||+|++- .....+.........+|.++.++|
T Consensus 130 ~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~------------------~~l~~i~~~~~~~~~~l~~i~r~L---- 187 (263)
T 2a14_A 130 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTL------------------LAMECACCSLDAYRAALCNLASLL---- 187 (263)
T ss_dssp HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEE------------------SCHHHHCSSHHHHHHHHHHHHTTE----
T ss_pred HHHhhhheEEeccccCCCCCCccccCCCCEeeeh------------------HHHHHhcCCHHHHHHHHHHHHHHc----
Confidence 1243 778888763211 113689999871 111111000011234677777765
Q ss_pred CCCcEEEEEeCCCCC------------cCCHHHHHHHHHhCCcEEeec
Q 010971 303 KSGGYIVYSTCSIMV------------TENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 303 kpGG~LVYSTCSi~~------------eENE~vV~~~L~~~~~~lv~~ 338 (496)
||||+|+.++..-.. -=.++.+..+|...+++++.+
T Consensus 188 KPGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~ 235 (263)
T 2a14_A 188 KPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQL 235 (263)
T ss_dssp EEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred CCCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEEEEE
Confidence 999999999742110 014556667777777776654
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.7e-09 Score=107.49 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=86.4
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
+.++.+|||+|||+|..+..+++. +.+.|+|+|++ ..++.+++++...|+.+ +.++.+|+..++ ++.+.||+|+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~--g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~Ii 138 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVE--LPVEKVDIII 138 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT--TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCC--CSSSCEEEEE
T ss_pred cCCCCEEEEEeccchHHHHHHHHC--CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHcc--CCCCceEEEE
Confidence 457899999999999999998886 44699999999 59999999999999977 999999998875 3347899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
++.+..... + . .. ...+|..+.++| +|||+|+.+.+++.
T Consensus 139 s~~~~~~l~----~-----~---~~-------~~~~l~~~~r~L----kpgG~li~~~~~~~ 177 (349)
T 3q7e_A 139 SEWMGYCLF----Y-----E---SM-------LNTVLHARDKWL----APDGLIFPDRATLY 177 (349)
T ss_dssp ECCCBBTBT----B-----T---CC-------HHHHHHHHHHHE----EEEEEEESCEEEEE
T ss_pred Ecccccccc----C-----c---hh-------HHHHHHHHHHhC----CCCCEEccccceEE
Confidence 986422210 0 0 01 123566666665 99999987776643
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.86 E-value=7.4e-09 Score=96.35 Aligned_cols=115 Identities=14% Similarity=0.133 Sum_probs=82.2
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
.+.++.+|||+|||+|..+..++.. +...|+++|+++..++.++.|+. ++.++..|+..++ +.||+|+
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~-----~~~D~v~ 115 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS-----GKYDTWI 115 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC-----CCEEEEE
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC-----CCeeEEE
Confidence 4568899999999999999998876 34579999999999999999876 6788899987764 5799999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCC
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~ 332 (496)
+|+|..... . .....++..+++.+ |+ +|+.|.. .....+...+...+
T Consensus 116 ~~~p~~~~~--------------~------~~~~~~l~~~~~~~------g~--~~~~~~~---~~~~~~~~~~~~~g 162 (200)
T 1ne2_A 116 MNPPFGSVV--------------K------HSDRAFIDKAFETS------MW--IYSIGNA---KARDFLRREFSARG 162 (200)
T ss_dssp ECCCC---------------------------CHHHHHHHHHHE------EE--EEEEEEG---GGHHHHHHHHHHHE
T ss_pred ECCCchhcc--------------C------chhHHHHHHHHHhc------Cc--EEEEEcC---chHHHHHHHHHHCC
Confidence 999953211 0 11234577777653 33 6777743 33455555565554
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=98.86 E-value=9.3e-09 Score=97.67 Aligned_cols=108 Identities=17% Similarity=0.198 Sum_probs=81.4
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.++.+|||+|||+|..+..++.. ..|+++|+++..++.+++++...+ .++.+...|+..++. . +.||+|++.
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~--~-~~fD~v~~~ 103 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELEL--P-EPVDAITIL 103 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCC--S-SCEEEEEEC
T ss_pred CCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCC--C-CCcCEEEEe
Confidence 45789999999999999887765 689999999999999999998887 468888899877652 2 689999985
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.. ++ .+..+..+ ...+|..+.++| +|||+|+.++.+
T Consensus 104 ~~-----~~------~~~~~~~~-------~~~~l~~~~~~L----~pgG~l~~~~~~ 139 (243)
T 3d2l_A 104 CD-----SL------NYLQTEAD-------VKQTFDSAARLL----TDGGKLLFDVHS 139 (243)
T ss_dssp TT-----GG------GGCCSHHH-------HHHHHHHHHHHE----EEEEEEEEEEEC
T ss_pred CC-----ch------hhcCCHHH-------HHHHHHHHHHhc----CCCeEEEEEcCC
Confidence 31 11 11112222 245677777776 999999987655
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.85 E-value=2e-08 Score=96.31 Aligned_cols=109 Identities=18% Similarity=0.123 Sum_probs=82.7
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
...++.+|||+|||+|..+..++.. ...|+++|+|+..++.+++++...+. ++.++..|+..++. .+.||.|+
T Consensus 38 ~~~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~---~~~fD~v~ 110 (252)
T 1wzn_A 38 AKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAF---KNEFDAVT 110 (252)
T ss_dssp CSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCC---CSCEEEEE
T ss_pred cccCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhccc---CCCccEEE
Confidence 3467889999999999999998875 35899999999999999999998887 68889999887652 26799999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
+... .... .+.. ....+|..+.+.| +|||.++..+.
T Consensus 111 ~~~~--~~~~----------~~~~-------~~~~~l~~~~~~L----~pgG~li~~~~ 146 (252)
T 1wzn_A 111 MFFS--TIMY----------FDEE-------DLRKLFSKVAEAL----KPGGVFITDFP 146 (252)
T ss_dssp ECSS--GGGG----------SCHH-------HHHHHHHHHHHHE----EEEEEEEEEEE
T ss_pred EcCC--chhc----------CCHH-------HHHHHHHHHHHHc----CCCeEEEEecc
Confidence 6311 1110 1111 2345677777776 99999987653
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.84 E-value=9.2e-09 Score=103.45 Aligned_cols=113 Identities=12% Similarity=0.107 Sum_probs=76.8
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC------eEEEEecCCC------CCccc
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT------NTIVCNYDGN------ELPKV 244 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~------nv~v~~~D~~------~~~~~ 244 (496)
.+|.+|||+|||+|+-+..++.. +.+.|+|+|+|+..++.++++....+.. ++.+...|.. .++..
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~ 124 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREV 124 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTT
T ss_pred CCCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcc
Confidence 35889999999999866655442 3468999999999999999998887754 3556666662 22222
Q ss_pred cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 245 ~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
+..+.||+|+|-- . + .+.+...+ +..+|.++.++| +|||+++.+|+.
T Consensus 125 ~~~~~FD~V~~~~-----~-l------hy~~~~~~-------~~~~l~~~~r~L----kpGG~~i~~~~~ 171 (302)
T 2vdw_A 125 FYFGKFNIIDWQF-----A-I------HYSFHPRH-------YATVMNNLSELT----ASGGKVLITTMD 171 (302)
T ss_dssp CCSSCEEEEEEES-----C-G------GGTCSTTT-------HHHHHHHHHHHE----EEEEEEEEEEEC
T ss_pred ccCCCeeEEEECc-----h-H------HHhCCHHH-------HHHHHHHHHHHc----CCCCEEEEEeCC
Confidence 3347899998621 1 1 11111111 135688888876 999999998875
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-08 Score=97.80 Aligned_cols=105 Identities=16% Similarity=0.160 Sum_probs=81.6
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
.+.++.+|||+|||+|..+..++.. .+.|+++|+|+..++.+++++ ..+..++.+...|+..++ +..+.||+|+
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~--~~~~~fD~v~ 109 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIP--LPDESVHGVI 109 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCC--SCTTCEEEEE
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCC--CCCCCeeEEE
Confidence 5678999999999999999988875 368999999999999999988 445678999999998776 3347899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
+... +..-+ . ...+|..+.++| +|||+|+.+
T Consensus 110 ~~~~------l~~~~------~----------~~~~l~~~~~~L----~pgG~l~~~ 140 (263)
T 2yqz_A 110 VVHL------WHLVP------D----------WPKVLAEAIRVL----KPGGALLEG 140 (263)
T ss_dssp EESC------GGGCT------T----------HHHHHHHHHHHE----EEEEEEEEE
T ss_pred ECCc------hhhcC------C----------HHHHHHHHHHHC----CCCcEEEEE
Confidence 8422 11101 1 134677777776 999999887
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-08 Score=98.35 Aligned_cols=140 Identities=14% Similarity=0.098 Sum_probs=93.4
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC--------------------------
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-------------------------- 228 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-------------------------- 228 (496)
...+|.+|||+|||+|..+..++... ...|+++|+++..++.+++++...+.
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACES--FTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEE 130 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhcc--cCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHH
Confidence 34578899999999999988777542 14899999999999999998866431
Q ss_pred ---CeE-EEEecCCCCCccc--cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 010971 229 ---TNT-IVCNYDGNELPKV--LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANS 302 (496)
Q Consensus 229 ---~nv-~v~~~D~~~~~~~--~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~l 302 (496)
.++ .+...|+...+.. ...+.||+|++.- + ...+.........+|..+.++|
T Consensus 131 ~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~------~------------l~~~~~~~~~~~~~l~~~~~~L---- 188 (265)
T 2i62_A 131 KLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTL------C------------LDAACPDLPAYRTALRNLGSLL---- 188 (265)
T ss_dssp HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEES------C------------HHHHCSSHHHHHHHHHHHHTTE----
T ss_pred HhhhhheeEEEeeeccCCCCCccccCCccEEEEhh------h------------hhhhcCChHHHHHHHHHHHhhC----
Confidence 126 7888898775321 1126899999731 1 1100001123355677777776
Q ss_pred CCCcEEEEEeCCC------------CCcCCHHHHHHHHHhCCcEEeec
Q 010971 303 KSGGYIVYSTCSI------------MVTENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 303 kpGG~LVYSTCSi------------~~eENE~vV~~~L~~~~~~lv~~ 338 (496)
+|||+|+.++..- ...-+++.+..+|...+++++.+
T Consensus 189 kpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 236 (265)
T 2i62_A 189 KPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQF 236 (265)
T ss_dssp EEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEE
T ss_pred CCCcEEEEEecCCCceEEcCCccccccccCHHHHHHHHHHCCCEEEEE
Confidence 9999999887321 11124566777777778777654
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.83 E-value=3.9e-09 Score=107.12 Aligned_cols=113 Identities=15% Similarity=0.133 Sum_probs=84.8
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~V 253 (496)
...++.+|||+|||+|..+..+++. +...|+|+|++ ..+..+++++...|+.+ +.++..|+..++ ++.+.||+|
T Consensus 35 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~I 109 (328)
T 1g6q_1 35 DLFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH--LPFPKVDII 109 (328)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC--CSSSCEEEE
T ss_pred hhcCCCEEEEecCccHHHHHHHHHC--CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhcc--CCCCcccEE
Confidence 3457899999999999999988875 34689999999 68999999999999864 999999998875 233689999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
+++++..... + ... ...+|..+.++| +|||+|+.++|++
T Consensus 110 vs~~~~~~l~----~--------~~~-------~~~~l~~~~~~L----kpgG~li~~~~~~ 148 (328)
T 1g6q_1 110 ISEWMGYFLL----Y--------ESM-------MDTVLYARDHYL----VEGGLIFPDKCSI 148 (328)
T ss_dssp EECCCBTTBS----T--------TCC-------HHHHHHHHHHHE----EEEEEEESCEEEE
T ss_pred EEeCchhhcc----c--------HHH-------HHHHHHHHHhhc----CCCeEEEEeeceE
Confidence 9987633221 0 001 123455555665 9999998666654
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-08 Score=95.97 Aligned_cols=126 Identities=10% Similarity=0.097 Sum_probs=90.8
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.++.+|||+|||+|..+..++... ..|+++|+++..++.+++++.. ++.++..|+..++ ..+.||+|++.
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~---~~~~fD~v~~~ 110 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQ---LPRRYDNIVLT 110 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCC---CSSCEEEEEEE
T ss_pred cCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcC---cCCcccEEEEh
Confidence 468899999999999999888753 3799999999999998887644 7888899987763 34789999973
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHH-HhhhhcCCCCcEEEEEeCCCCC------------------
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAI-DMVDANSKSGGYIVYSTCSIMV------------------ 317 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~-~~l~~~lkpGG~LVYSTCSi~~------------------ 317 (496)
+++..-++ ...+|..+. ++| +|||+|+.++.....
T Consensus 111 ------~~l~~~~~----------------~~~~l~~~~~~~L----kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (250)
T 2p7i_A 111 ------HVLEHIDD----------------PVALLKRINDDWL----AEGGRLFLVCPNANAVSRQIAVKMGIISHNSAV 164 (250)
T ss_dssp ------SCGGGCSS----------------HHHHHHHHHHTTE----EEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCC
T ss_pred ------hHHHhhcC----------------HHHHHHHHHHHhc----CCCCEEEEEcCChHHHHHHHHHHcCccccchhc
Confidence 22221111 124677777 775 999999998844221
Q ss_pred -----------cCCHHHHHHHHHhCCcEEeec
Q 010971 318 -----------TENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 318 -----------eENE~vV~~~L~~~~~~lv~~ 338 (496)
.=+..-+..+|+..+++++.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 196 (250)
T 2p7i_A 165 TEAEFAHGHRCTYALDTLERDASRAGLQVTYR 196 (250)
T ss_dssp CHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred ccccccccccccCCHHHHHHHHHHCCCeEEEE
Confidence 114456667777778877765
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=5.8e-09 Score=104.86 Aligned_cols=115 Identities=15% Similarity=0.170 Sum_probs=83.0
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc----CCCeEEEEecCCCCCccccCCCCcCE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM----GVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~----g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
.++.+|||+|||+|+.+..++... +...|+++|+++..++.+++++..+ .-.++.++..|+..++.....+.||+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 467899999999999999888653 3469999999999999999988542 23568999999987653212478999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
|++|++... + | ...+ .+.+++..+.+.| +|||+|+..+.+
T Consensus 173 Ii~d~~~~~-~-----~-------~~~l-----~~~~~l~~~~~~L----kpgG~lv~~~~~ 212 (304)
T 3bwc_A 173 VIIDTTDPA-G-----P-------ASKL-----FGEAFYKDVLRIL----KPDGICCNQGES 212 (304)
T ss_dssp EEEECC---------------------------CCHHHHHHHHHHE----EEEEEEEEEECC
T ss_pred EEECCCCcc-c-----c-------chhh-----hHHHHHHHHHHhc----CCCcEEEEecCC
Confidence 999987311 0 0 0000 1245677777776 999999987654
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.80 E-value=6.7e-09 Score=98.68 Aligned_cols=111 Identities=16% Similarity=0.140 Sum_probs=82.7
Q ss_pred HHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCC
Q 010971 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~ 249 (496)
...++...++.+|||+|||+|..+..++.. +.+.|+++|+++..++.+++++.. .++.+...|+..++ +..+.
T Consensus 35 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~--~~~~~ 107 (243)
T 3bkw_A 35 LRAMLPEVGGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLH--LPQDS 107 (243)
T ss_dssp HHHHSCCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCC--CCTTC
T ss_pred HHHhccccCCCEEEEEcCcCCHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhcc--CCCCC
Confidence 445566678999999999999999988876 324899999999999988877643 36888899987765 33478
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
||+|++... +..-+ . ...+|..+.++| +|||+|++++.
T Consensus 108 fD~v~~~~~------l~~~~------~----------~~~~l~~~~~~L----~pgG~l~~~~~ 145 (243)
T 3bkw_A 108 FDLAYSSLA------LHYVE------D----------VARLFRTVHQAL----SPGGHFVFSTE 145 (243)
T ss_dssp EEEEEEESC------GGGCS------C----------HHHHHHHHHHHE----EEEEEEEEEEE
T ss_pred ceEEEEecc------ccccc------h----------HHHHHHHHHHhc----CcCcEEEEEeC
Confidence 999997432 11111 0 134677777776 99999999873
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=4.1e-08 Score=109.70 Aligned_cols=110 Identities=17% Similarity=0.167 Sum_probs=83.8
Q ss_pred CCCcccccccEEEeCCcch---hH---HHhcCCCCCCeEeeccCCCchHHHHHHHHcC----------------------
Q 010971 150 GATPEYMAGFYMLQSASSF---LP---VMALAPQEKERVIDMAAAPGGKTTYIAALMK---------------------- 201 (496)
Q Consensus 150 ~~~~~~~~G~~~iQd~sS~---l~---v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~---------------------- 201 (496)
...+.++.|+-..+..+.+ ++ +.+..+.++..|||.|||+|+..+.+|....
T Consensus 156 sg~~LhkRgyr~~~~~apl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~ 235 (703)
T 3v97_A 156 SGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEA 235 (703)
T ss_dssp SSSCTTCCSSSCSSCCCSSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHH
T ss_pred CCCccccccccccCCCCCCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHH
Confidence 3445677776555554442 22 2334567899999999999999988776542
Q ss_pred -------------------CCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEEECCCC
Q 010971 202 -------------------NTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 202 -------------------~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLlDaPC 259 (496)
....|+++|+++..++.++.|+.+.|+.+ +.+.+.|+..+......+.||+|++|||+
T Consensus 236 ~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPY 313 (703)
T 3v97_A 236 IWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPY 313 (703)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCC
T ss_pred HHHHHHHHHHHHhhhccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCc
Confidence 12579999999999999999999999987 89999999877432222389999999997
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.7e-08 Score=95.36 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=76.9
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.++.+|||+|||+|..+..++.. ...|+++|+++..++.+++++. ++.++..|+..++. .+.||+|++.
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~---~~~fD~v~~~ 117 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRNP-----DAVLHHGDMRDFSL---GRRFSAVTCM 117 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCC---SCCEEEEEEC
T ss_pred CCCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----CCEEEECChHHCCc---cCCcCEEEEc
Confidence 46789999999999999888775 2589999999999999988753 67888999988764 3789999974
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
.. ++. +..++.+ ...+|..+.++| +|||+|+.++.
T Consensus 118 ~~-----~l~------~~~~~~~-------~~~~l~~~~~~L----~pgG~l~i~~~ 152 (263)
T 3pfg_A 118 FS-----SIG------HLAGQAE-------LDAALERFAAHV----LPDGVVVVEPW 152 (263)
T ss_dssp TT-----GGG------GSCHHHH-------HHHHHHHHHHTE----EEEEEEEECCC
T ss_pred Cc-----hhh------hcCCHHH-------HHHHHHHHHHhc----CCCcEEEEEec
Confidence 21 111 1111122 245677777776 99999998643
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.80 E-value=9.1e-08 Score=95.88 Aligned_cols=116 Identities=20% Similarity=0.135 Sum_probs=88.8
Q ss_pred hcCC--CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCC
Q 010971 173 ALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 173 ~L~~--~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~ 249 (496)
.++. .++.+|||+|||+|..+..++...++ ..++++|++ ..++.+++++...|+.+ +.+...|+...+ ++ ..
T Consensus 158 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~-~~ 232 (335)
T 2r3s_A 158 LVNENKIEPLKVLDISASHGLFGIAVAQHNPN-AEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVD--YG-ND 232 (335)
T ss_dssp HHTC--CCCSEEEEETCTTCHHHHHHHHHCTT-CEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSC--CC-SC
T ss_pred hcccccCCCCEEEEECCCcCHHHHHHHHHCCC-CeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCC--CC-CC
Confidence 3455 67899999999999999999998753 699999999 99999999999999864 999999987653 22 45
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
||+|++--. ...++..+ ..++|.++.+.| +|||+|+..+.....
T Consensus 233 ~D~v~~~~~-------------l~~~~~~~-------~~~~l~~~~~~L----~pgG~l~i~e~~~~~ 276 (335)
T 2r3s_A 233 YDLVLLPNF-------------LHHFDVAT-------CEQLLRKIKTAL----AVEGKVIVFDFIPNS 276 (335)
T ss_dssp EEEEEEESC-------------GGGSCHHH-------HHHHHHHHHHHE----EEEEEEEEEECCCCT
T ss_pred CcEEEEcch-------------hccCCHHH-------HHHHHHHHHHhC----CCCcEEEEEeecCCC
Confidence 999998211 11222222 245778888876 999999888766543
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-07 Score=96.79 Aligned_cols=113 Identities=20% Similarity=0.147 Sum_probs=87.2
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~ 249 (496)
...++..++.+|||+|||+|..+..++...+ ...++++|+ +..++.+++++...|+. ++.+...|+... ++ ..
T Consensus 175 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~-~~ 248 (374)
T 1qzz_A 175 ADAYDWSAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP---LP-VT 248 (374)
T ss_dssp HHTSCCTTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC---CS-CC
T ss_pred HHhCCCCCCCEEEEECCCcCHHHHHHHHHCC-CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc---CC-CC
Confidence 3445667889999999999999999999875 468999999 99999999999999986 699999998651 22 34
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
||+|++... + ..+...+ ...+|.++.+.| +|||+|+.++.
T Consensus 249 ~D~v~~~~v------l-------~~~~~~~-------~~~~l~~~~~~L----~pgG~l~i~e~ 288 (374)
T 1qzz_A 249 ADVVLLSFV------L-------LNWSDED-------ALTILRGCVRAL----EPGGRLLVLDR 288 (374)
T ss_dssp EEEEEEESC------G-------GGSCHHH-------HHHHHHHHHHHE----EEEEEEEEEEC
T ss_pred CCEEEEecc------c-------cCCCHHH-------HHHHHHHHHHhc----CCCcEEEEEec
Confidence 999998422 1 1122221 245788888876 99999998876
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.79 E-value=3.9e-09 Score=107.92 Aligned_cols=118 Identities=15% Similarity=0.204 Sum_probs=86.4
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc--CC--CeEEEEecCCCCCccccCCCCcC
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--GV--TNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~--g~--~nv~v~~~D~~~~~~~~~~~~fD 251 (496)
...+.+|||+|||+|+.+..++... +...|+++|+|+..++.+++++.++ |+ .++.++.+|+..+......+.||
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fD 196 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD 196 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCcc
Confidence 3456899999999999999888753 3469999999999999999999875 44 46999999987653222236899
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
+|++|++.. .+. + .. ....+++..+.++| +|||.|+..+.+..
T Consensus 197 lIi~d~~~p-~~~----~--------~~-----l~~~~~l~~~~~~L----kpgG~lv~~~~~~~ 239 (334)
T 1xj5_A 197 AVIVDSSDP-IGP----A--------KE-----LFEKPFFQSVARAL----RPGGVVCTQAESLW 239 (334)
T ss_dssp EEEECCCCT-TSG----G--------GG-----GGSHHHHHHHHHHE----EEEEEEEEECCCTT
T ss_pred EEEECCCCc-cCc----c--------hh-----hhHHHHHHHHHHhc----CCCcEEEEecCCcc
Confidence 999998621 110 0 00 01245677777776 99999999765543
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.79 E-value=6.6e-09 Score=107.51 Aligned_cols=113 Identities=16% Similarity=0.081 Sum_probs=86.0
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCE
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~ 252 (496)
+...++.+|||+|||+|..+..+++. +...|+|+|++ ..++.+++++..+|+.+ +.++..|+..++. + +.||+
T Consensus 59 ~~~~~~~~VLDlGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~-~~~D~ 132 (376)
T 3r0q_C 59 KHHFEGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISL--P-EKVDV 132 (376)
T ss_dssp TTTTTTCEEEEESCTTTHHHHHHHHT--TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCC--S-SCEEE
T ss_pred cccCCCCEEEEeccCcCHHHHHHHhc--CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCc--C-CcceE
Confidence 34568999999999999999998886 33599999999 99999999999999976 8999999987752 2 78999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
|++++...... +. .. ...+|..+.++| +|||+|+.+.+++
T Consensus 133 Iv~~~~~~~l~----~e--------~~-------~~~~l~~~~~~L----kpgG~li~~~~~~ 172 (376)
T 3r0q_C 133 IISEWMGYFLL----RE--------SM-------FDSVISARDRWL----KPTGVMYPSHARM 172 (376)
T ss_dssp EEECCCBTTBT----TT--------CT-------HHHHHHHHHHHE----EEEEEEESSEEEE
T ss_pred EEEcChhhccc----ch--------HH-------HHHHHHHHHhhC----CCCeEEEEecCeE
Confidence 99976322110 00 00 123455555665 9999999877764
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.3e-09 Score=102.99 Aligned_cols=106 Identities=16% Similarity=0.132 Sum_probs=71.8
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC------eEEEE--ecCCCCCccccCC
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT------NTIVC--NYDGNELPKVLGL 247 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~------nv~v~--~~D~~~~~~~~~~ 247 (496)
+.+|.+|||+|||||+.|.++++. +.|+|+|+++ .+..+ +..... ++.++ ..|+..++ .
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a----~~~~~~~~~~~~~v~~~~~~~D~~~l~----~ 138 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGG----HEVPRITESYGWNIVKFKSRVDIHTLP----V 138 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSS----CCCCCCCCBTTGGGEEEECSCCTTTSC----C
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhh----hhhhhhhhccCCCeEEEecccCHhHCC----C
Confidence 568999999999999999988875 6899999998 22111 111122 67888 88998876 2
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc--EEEEEeCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG--YIVYSTCS 314 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG--~LVYSTCS 314 (496)
..||+|++|.. ..+|. +. .+... +..+|..+.++| +||| .+|..+..
T Consensus 139 ~~fD~V~sd~~-~~~~~----~~------~d~~~-----~l~~L~~~~r~L----kpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 139 ERTDVIMCDVG-ESSPK----WS------VESER-----TIKILELLEKWK----VKNPSADFVVKVLC 187 (265)
T ss_dssp CCCSEEEECCC-CCCSC----HH------HHHHH-----HHHHHHHHHHHH----HHCTTCEEEEEESC
T ss_pred CCCcEEEEeCc-ccCCc----cc------hhHHH-----HHHHHHHHHHHh----ccCCCeEEEEEeCC
Confidence 68999999976 33331 11 01110 112566676766 9999 88876644
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-08 Score=99.92 Aligned_cols=126 Identities=14% Similarity=0.102 Sum_probs=79.8
Q ss_pred HHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCC
Q 010971 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~ 249 (496)
....+.+.+|.+|||+|||+|..+..++.. .+.|+|+|+|+.+++.+++++... +-+..+...+.. .+... .+.
T Consensus 37 il~~l~l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~-~v~~~~~~~~~~-~~~~~-~~~ 110 (261)
T 3iv6_A 37 DIFLENIVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADR-CVTIDLLDITAE-IPKEL-AGH 110 (261)
T ss_dssp HHHTTTCCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSS-CCEEEECCTTSC-CCGGG-TTC
T ss_pred HHHhcCCCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhc-cceeeeeecccc-ccccc-CCC
Confidence 345667889999999999999999999875 368999999999999999998765 222223222220 11111 368
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~ 326 (496)
||+|+++.. + ..+...+ ...+|....++ | |||+|+.|..--..+-+..++..
T Consensus 111 fD~Vv~~~~------l-------~~~~~~~-------~~~~l~~l~~l----L-PGG~l~lS~~~g~~~~d~~~l~~ 162 (261)
T 3iv6_A 111 FDFVLNDRL------I-------NRFTTEE-------ARRACLGMLSL----V-GSGTVRASVKLGFYDIDLKLIEY 162 (261)
T ss_dssp CSEEEEESC------G-------GGSCHHH-------HHHHHHHHHHH----H-TTSEEEEEEEBSCCHHHHHHHHH
T ss_pred ccEEEEhhh------h-------HhCCHHH-------HHHHHHHHHHh----C-cCcEEEEEeccCcccccHHHHHH
Confidence 999998653 1 1122222 23345555554 6 99999877543332333334443
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.78 E-value=8e-09 Score=105.63 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=85.3
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcC
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD 251 (496)
.+...++.+|||+|||+|..+..++.. +.+.|+|+|+++ .+..++++++..|+ .++.++..|+..++. + +.||
T Consensus 45 ~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~--~-~~~D 118 (348)
T 2y1w_A 45 NHTDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL--P-EQVD 118 (348)
T ss_dssp TGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC--S-SCEE
T ss_pred ccccCCcCEEEEcCCCccHHHHHHHhC--CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCC--C-Ccee
Confidence 344568899999999999999988875 346999999996 88999999999998 579999999988752 2 5799
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
+|+++.+....+ ++ . ....+..+.++| +|||.|+.+++++.
T Consensus 119 ~Ivs~~~~~~~~----~~---------~-------~~~~l~~~~~~L----kpgG~li~~~~~~~ 159 (348)
T 2y1w_A 119 IIISEPMGYMLF----NE---------R-------MLESYLHAKKYL----KPSGNMFPTIGDVH 159 (348)
T ss_dssp EEEECCCBTTBT----TT---------S-------HHHHHHHGGGGE----EEEEEEESCEEEEE
T ss_pred EEEEeCchhcCC----hH---------H-------HHHHHHHHHhhc----CCCeEEEEecCcEE
Confidence 999986632211 00 0 122345555554 99999998777754
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.6e-08 Score=95.24 Aligned_cols=104 Identities=17% Similarity=0.130 Sum_probs=75.6
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
..++.+|||+|||+|..+..++.. ...|+++|+|+..++.++++ +.++..|+..+...+..+.||+|++
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~~~~~~fD~i~~ 107 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKSLPDKYLDGVMI 107 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT--------SEEECSCHHHHHHTSCTTCBSEEEE
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh--------cceeeccHHHHhhhcCCCCeeEEEE
Confidence 467899999999999999988886 25799999999999888776 5677778766422234578999997
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
. +++..-+ ..+ ...+|..+.++| +|||+|+.++..
T Consensus 108 ~------~~l~~~~-------~~~-------~~~~l~~~~~~L----kpgG~l~~~~~~ 142 (240)
T 3dli_A 108 S------HFVEHLD-------PER-------LFELLSLCYSKM----KYSSYIVIESPN 142 (240)
T ss_dssp E------SCGGGSC-------GGG-------HHHHHHHHHHHB----CTTCCEEEEEEC
T ss_pred C------CchhhCC-------cHH-------HHHHHHHHHHHc----CCCcEEEEEeCC
Confidence 3 2222111 111 134677777775 999999998765
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.77 E-value=5.2e-09 Score=99.15 Aligned_cols=108 Identities=13% Similarity=0.128 Sum_probs=79.2
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
.+.++|||+|||+|..++.++...+.. .++|+|+|+.+++.+++|+.++|+. ++.+ .|.... ...+.||+||+
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~---~~~~~~DvVLa 121 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD---VYKGTYDVVFL 121 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH---HTTSEEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc---CCCCCcChhhH
Confidence 457799999999999999888776654 9999999999999999999999998 6777 343221 23477999997
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE-eCCCC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS-TCSIM 316 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS-TCSi~ 316 (496)
- . +..+...++..+...++.| +|||.+|-- |-|+.
T Consensus 122 ~------------------k----~LHlL~~~~~al~~v~~~L----~pggvfISfptksl~ 157 (200)
T 3fzg_A 122 L------------------K----MLPVLKQQDVNILDFLQLF----HTQNFVISFPIKSLS 157 (200)
T ss_dssp E------------------T----CHHHHHHTTCCHHHHHHTC----EEEEEEEEEECCCCC
T ss_pred h------------------h----HHHhhhhhHHHHHHHHHHh----CCCCEEEEeChHHhc
Confidence 1 1 1222233444555777776 999988743 44543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=5.1e-09 Score=104.25 Aligned_cols=106 Identities=16% Similarity=0.084 Sum_probs=72.0
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC------eEEEE--ecCCCCCccccCC
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT------NTIVC--NYDGNELPKVLGL 247 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~------nv~v~--~~D~~~~~~~~~~ 247 (496)
+.+|.+|||+|||||+.|..+++. +.|+|+|+++ .+..+ +..... ++.++ .+|+..++ .
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a----~~~~~~~~~~~~~v~~~~~~~D~~~l~----~ 146 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSG----HEKPRLVETFGWNLITFKSKVDVTKME----P 146 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTT----SCCCCCCCCTTGGGEEEECSCCGGGCC----C
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhh----hhchhhhhhcCCCeEEEeccCcHhhCC----C
Confidence 568999999999999999988876 6899999998 32111 111222 67888 88988765 3
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc--EEEEEeCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG--YIVYSTCS 314 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG--~LVYSTCS 314 (496)
+.||+|++|.. ..+|. +.+ +.. . +..+|..+.+.| +||| .++..+.+
T Consensus 147 ~~fD~Vvsd~~-~~~~~----~~~------d~~---~--~l~~L~~~~r~L----kpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 147 FQADTVLCDIG-ESNPT----AAV------EAS---R--TLTVLNVISRWL----EYNQGCGFCVKVLN 195 (276)
T ss_dssp CCCSEEEECCC-CCCSC----HHH------HHH---H--HHHHHHHHHHHH----HHSTTCEEEEEESC
T ss_pred CCcCEEEECCC-cCCCc----hhh------hHH---H--HHHHHHHHHHHh----ccCCCcEEEEEeCC
Confidence 68999999976 33331 110 111 0 112566677766 9999 99886544
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.76 E-value=2.4e-08 Score=94.64 Aligned_cols=107 Identities=15% Similarity=0.184 Sum_probs=81.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
++.+|||+|||+|..+..++.. ...|+++|+++..++.+++++...+. ++.+...|+..++. . +.||+|++..
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~--~-~~fD~v~~~~ 109 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNI--N-RKFDLITCCL 109 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCC--S-CCEEEEEECT
T ss_pred CCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCc--c-CCceEEEEcC
Confidence 7889999999999999988876 25899999999999999999998887 78888999877652 2 6899999742
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
- ++. +..+..+ ...+|..+.++| +|||+|+.++.
T Consensus 110 ~-----~l~------~~~~~~~-------~~~~l~~~~~~L----~pgG~l~~~~~ 143 (246)
T 1y8c_A 110 D-----STN------YIIDSDD-------LKKYFKAVSNHL----KEGGVFIFDIN 143 (246)
T ss_dssp T-----GGG------GCCSHHH-------HHHHHHHHHTTE----EEEEEEEEEEE
T ss_pred c-----ccc------ccCCHHH-------HHHHHHHHHHhc----CCCcEEEEEec
Confidence 0 111 1111122 245677777775 99999998654
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.8e-08 Score=92.90 Aligned_cols=104 Identities=15% Similarity=0.070 Sum_probs=74.2
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC---ccccCCCCc
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL---PKVLGLNTV 250 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~---~~~~~~~~f 250 (496)
+...++.+|||+|||+|..+..++.. ...|+++|+++..++.++++ .++.+...|+..+ +. .....|
T Consensus 48 ~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~-~~~~~f 117 (227)
T 3e8s_A 48 ILGRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKV-PVGKDY 117 (227)
T ss_dssp HHHTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCS-CCCCCE
T ss_pred hhcCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh------cccccchhhHHhhccccc-ccCCCc
Confidence 33456799999999999999988876 35899999999999988877 3445566666554 21 123459
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
|+|++..... .++ ...+|..+.++| +|||+|+.++..
T Consensus 118 D~v~~~~~l~-------~~~----------------~~~~l~~~~~~L----~pgG~l~~~~~~ 154 (227)
T 3e8s_A 118 DLICANFALL-------HQD----------------IIELLSAMRTLL----VPGGALVIQTLH 154 (227)
T ss_dssp EEEEEESCCC-------SSC----------------CHHHHHHHHHTE----EEEEEEEEEECC
T ss_pred cEEEECchhh-------hhh----------------HHHHHHHHHHHh----CCCeEEEEEecC
Confidence 9999854321 111 124577777776 999999998764
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.9e-08 Score=96.38 Aligned_cols=112 Identities=11% Similarity=0.045 Sum_probs=79.2
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH-----------------cCCCeEEEEecC
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR-----------------MGVTNTIVCNYD 237 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r-----------------~g~~nv~v~~~D 237 (496)
.+.++.+|||+|||+|..+..||+. ...|+|+|+|+..++.++++... ....++.+.++|
T Consensus 65 ~~~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D 141 (252)
T 2gb4_A 65 KGQSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCS 141 (252)
T ss_dssp TTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESC
T ss_pred cCCCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECc
Confidence 3467899999999999999999885 24899999999999988765431 012578999999
Q ss_pred CCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 238 GNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 238 ~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
+..++... .+.||.|++-.. .-.+ ... ....++..+.++| +|||+|++.|..
T Consensus 142 ~~~l~~~~-~~~FD~V~~~~~---l~~l----------~~~-------~~~~~l~~~~~~L----kpGG~l~l~~~~ 193 (252)
T 2gb4_A 142 IFDLPRAN-IGKFDRIWDRGA---LVAI----------NPG-------DHDRYADIILSLL----RKEFQYLVAVLS 193 (252)
T ss_dssp TTTGGGGC-CCCEEEEEESSS---TTTS----------CGG-------GHHHHHHHHHHTE----EEEEEEEEEEEE
T ss_pred cccCCccc-CCCEEEEEEhhh---hhhC----------CHH-------HHHHHHHHHHHHc----CCCeEEEEEEEe
Confidence 98876421 268999986321 1111 111 1234567777776 999999866644
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.6e-08 Score=100.62 Aligned_cols=116 Identities=16% Similarity=0.220 Sum_probs=85.9
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEecCCCCCccccCCCCcCE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----VTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g----~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
.++.+|||+|||+|+.+..++... +...|+++|+++..++.+++++..++ -.++.++..|+..+.... .+.||+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-~~~fD~ 154 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-TNTYDV 154 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-CSCEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC-CCCceE
Confidence 456899999999999999887653 34799999999999999999987653 357899999987653222 368999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
|++|++.. .| |.. .+ ...+++..+.+.| +|||.|+..+++..
T Consensus 155 Ii~d~~~~-~~-----~~~-------~l-----~~~~~l~~~~~~L----~pgG~lv~~~~~~~ 196 (283)
T 2i7c_A 155 IIVDSSDP-IG-----PAE-------TL-----FNQNFYEKIYNAL----KPNGYCVAQCESLW 196 (283)
T ss_dssp EEEECCCT-TT-----GGG-------GG-----SSHHHHHHHHHHE----EEEEEEEEECCCTT
T ss_pred EEEcCCCC-CC-----cch-------hh-----hHHHHHHHHHHhc----CCCcEEEEECCCcc
Confidence 99998642 11 110 00 1145677777776 99999999887643
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.8e-08 Score=99.02 Aligned_cols=123 Identities=15% Similarity=0.086 Sum_probs=86.1
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC----CeEEEEecCCCCCccc-c
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV----TNTIVCNYDGNELPKV-L 245 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~----~nv~v~~~D~~~~~~~-~ 245 (496)
...+...++.+|||+|||+|..+..++.. ...|+++|+|+..++.+++++...+. .++.+...|+..++.. +
T Consensus 50 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 126 (293)
T 3thr_A 50 LGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP 126 (293)
T ss_dssp HHHHHHTTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC
T ss_pred HHHhcccCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccc
Confidence 34444567899999999999999999876 24899999999999999998865543 3577888888776521 2
Q ss_pred CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 246 ~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
..+.||+|++... ++..-++... +. .....+|..+.++| +|||+|+.+++.
T Consensus 127 ~~~~fD~V~~~g~-----~l~~~~~~~~--~~-------~~~~~~l~~~~~~L----kpgG~l~~~~~~ 177 (293)
T 3thr_A 127 AGDGFDAVICLGN-----SFAHLPDSKG--DQ-------SEHRLALKNIASMV----RPGGLLVIDHRN 177 (293)
T ss_dssp CTTCEEEEEECTT-----CGGGSCCSSS--SS-------HHHHHHHHHHHHTE----EEEEEEEEEEEC
T ss_pred cCCCeEEEEEcCh-----HHhhcCcccc--CH-------HHHHHHHHHHHHHc----CCCeEEEEEeCC
Confidence 3478999997311 1111111000 00 11345788888876 999999998875
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=3.8e-08 Score=98.27 Aligned_cols=114 Identities=14% Similarity=0.136 Sum_probs=82.4
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc-------CCCeEEEEecCCCCCcc--cc--
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-------GVTNTIVCNYDGNELPK--VL-- 245 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~-------g~~nv~v~~~D~~~~~~--~~-- 245 (496)
.++.+|||+|||+|..+..++.. +...|+++|+++..++.+++++... +..++.+++.|+..++. .+
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 110 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRD 110 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSS
T ss_pred CCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhccc
Confidence 36889999999999999988873 3469999999999999999998876 45578999999987641 12
Q ss_pred CCCCcCEEEECCCCCCCCcccCCchhhcc-CCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 246 GLNTVDRVLLDAPCSGTGVISKDESVKTS-KSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 246 ~~~~fD~VLlDaPCSg~G~i~r~p~~k~~-~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
..+.||+|++.-. +.|. -+.. ....+|..+.++| +|||+|+.+|...
T Consensus 111 ~~~~fD~V~~~~~------------l~~~~~~~~-------~~~~~l~~~~~~L----kpgG~li~~~~~~ 158 (313)
T 3bgv_A 111 PQMCFDICSCQFV------------CHYSFESYE-------QADMMLRNACERL----SPGGYFIGTTPNS 158 (313)
T ss_dssp TTCCEEEEEEETC------------GGGGGGSHH-------HHHHHHHHHHTTE----EEEEEEEEEEECH
T ss_pred CCCCEEEEEEecc------------hhhccCCHH-------HHHHHHHHHHHHh----CCCcEEEEecCCh
Confidence 2358999997321 1111 1111 1235677777776 9999999987653
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.9e-08 Score=107.69 Aligned_cols=112 Identities=16% Similarity=0.149 Sum_probs=82.6
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcCE
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
+...++.+|||+|||+|..+..++.. +...|+|+|+++ .++.+++++..+|+ .++.++..|+..++ + .+.||+
T Consensus 154 l~~~~~~~VLDiGcGtG~la~~la~~--~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~--~-~~~fD~ 227 (480)
T 3b3j_A 154 HTDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS--L-PEQVDI 227 (480)
T ss_dssp GGGTTTCEEEEESCSTTHHHHHHHHT--TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCC--C-SSCEEE
T ss_pred hhhcCCCEEEEecCcccHHHHHHHHc--CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCc--c-CCCeEE
Confidence 34457899999999999999988773 346999999998 89999999999999 57999999998764 2 257999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
|++++| +.. +.. ......+..+.++| +|||+|+.+.+++
T Consensus 228 Ivs~~~----~~~---------~~~-------e~~~~~l~~~~~~L----kpgG~li~~~~~~ 266 (480)
T 3b3j_A 228 IISEPM----GYM---------LFN-------ERMLESYLHAKKYL----KPSGNMFPTIGDV 266 (480)
T ss_dssp EECCCC----HHH---------HTC-------HHHHHHHHHGGGGE----EEEEEEESCEEEE
T ss_pred EEEeCc----hHh---------cCc-------HHHHHHHHHHHHhc----CCCCEEEEEecee
Confidence 998766 100 000 01123444555554 9999999665553
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.74 E-value=2e-08 Score=97.73 Aligned_cols=106 Identities=18% Similarity=0.151 Sum_probs=79.4
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
...+.+.++.+|||+|||+|..+..++. ..+.|+++|+|+..+..++.+. ++.+...|+..++ +..+.|
T Consensus 27 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~~--~~~~~f 95 (261)
T 3ege_A 27 INLLNLPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP------QVEWFTGYAENLA--LPDKSV 95 (261)
T ss_dssp HHHHCCCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT------TEEEECCCTTSCC--SCTTCB
T ss_pred HHHhCCCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc------CCEEEECchhhCC--CCCCCE
Confidence 4455677899999999999999998886 3479999999998877655443 7899999998876 344789
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
|.|++... +..-+ ....+|..+.+.| + ||++++.++.
T Consensus 96 D~v~~~~~------l~~~~----------------~~~~~l~~~~~~L----k-gG~~~~~~~~ 132 (261)
T 3ege_A 96 DGVISILA------IHHFS----------------HLEKSFQEMQRII----R-DGTIVLLTFD 132 (261)
T ss_dssp SEEEEESC------GGGCS----------------SHHHHHHHHHHHB----C-SSCEEEEEEC
T ss_pred eEEEEcch------Hhhcc----------------CHHHHHHHHHHHh----C-CcEEEEEEcC
Confidence 99997432 11101 1134677787876 9 9999888876
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-08 Score=102.80 Aligned_cols=116 Identities=18% Similarity=0.186 Sum_probs=83.2
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc--CC--CeEEEEecCCCCCccccCCCCcCE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--GV--TNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~--g~--~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
..+.+|||+|||+|+.+..++... +.+.|+++|+++..++.+++++..+ |+ .++.++..|+..+... ..+.||+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~ 184 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HKNEFDV 184 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CTTCEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh-cCCCceE
Confidence 345799999999999999888753 3479999999999999999998765 43 4689999998764322 2368999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
|++|++.. .| |. .. ....+++..+.+.| +|||.|+..+.+..
T Consensus 185 Ii~d~~~~-~~-----~~-------~~-----l~t~~~l~~~~~~L----kpgG~lv~~~~~~~ 226 (314)
T 2b2c_A 185 IITDSSDP-VG-----PA-------ES-----LFGQSYYELLRDAL----KEDGILSSQGESVW 226 (314)
T ss_dssp EEECCC-------------------------------HHHHHHHHE----EEEEEEEEECCCTT
T ss_pred EEEcCCCC-CC-----cc-------hh-----hhHHHHHHHHHhhc----CCCeEEEEECCCcc
Confidence 99998621 11 00 00 01245677777776 99999999876654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.7e-08 Score=93.48 Aligned_cols=111 Identities=12% Similarity=0.084 Sum_probs=81.7
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc---CCCCcC
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---GLNTVD 251 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~---~~~~fD 251 (496)
.+.++.+|||+|||+|..+..++.... .|+++|+|+..++.+++++ ...++.++..|+..++... ....||
T Consensus 53 ~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~d 126 (245)
T 3ggd_A 53 LFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAAQIHSEIGDA 126 (245)
T ss_dssp TSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHHHHHHHHHCSC
T ss_pred ccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhC---cccCceEEECcccccccccccccccCcc
Confidence 357889999999999999999998753 7999999999999998877 3447899999998764321 012499
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
+|++....... ...+ ...+|..+.+.| +|||+|+.++.+.
T Consensus 127 ~v~~~~~~~~~-------------~~~~-------~~~~l~~~~~~L----kpgG~l~i~~~~~ 166 (245)
T 3ggd_A 127 NIYMRTGFHHI-------------PVEK-------RELLGQSLRILL----GKQGAMYLIELGT 166 (245)
T ss_dssp EEEEESSSTTS-------------CGGG-------HHHHHHHHHHHH----TTTCEEEEEEECT
T ss_pred EEEEcchhhcC-------------CHHH-------HHHHHHHHHHHc----CCCCEEEEEeCCc
Confidence 99986432111 1111 234677777776 9999988877653
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.71 E-value=4.5e-08 Score=97.06 Aligned_cols=113 Identities=16% Similarity=0.092 Sum_probs=83.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc--CC--CeEEEEecCCCCCccccCCCCcCEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--GV--TNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~--g~--~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
.+.+|||+|||.|+.+..++... +...|+++|+++..++.+++++..+ ++ .++.++.+|+..+.... .+.||+|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~fD~I 152 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS-ENQYDVI 152 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC-CSCEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC-CCCeeEE
Confidence 46799999999999998887653 3469999999999999999998764 33 46999999997652211 3689999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
++|+|.. .+. +...+ ..+++..+.+.| +|||.||..+.+
T Consensus 153 i~d~~~~-~~~----~~~l~-------------~~~~~~~~~~~L----~pgG~lv~~~~~ 191 (275)
T 1iy9_A 153 MVDSTEP-VGP----AVNLF-------------TKGFYAGIAKAL----KEDGIFVAQTDN 191 (275)
T ss_dssp EESCSSC-CSC----CCCCS-------------TTHHHHHHHHHE----EEEEEEEEECCC
T ss_pred EECCCCC-CCc----chhhh-------------HHHHHHHHHHhc----CCCcEEEEEcCC
Confidence 9999852 221 11000 123566666776 999999998765
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.7e-08 Score=101.77 Aligned_cols=115 Identities=16% Similarity=0.183 Sum_probs=83.2
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc--CC--CeEEEEecCCCCCccccCCCCcCE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--GV--TNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~--g~--~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
..+.+|||+|||+|+.+..++... +...|+++|+++..++.+++++..+ ++ .++.++..|+..+... ..+.||+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~-~~~~fD~ 171 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-NQDAFDV 171 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT-CSSCEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhh-CCCCceE
Confidence 456899999999999999888753 3479999999999999999998763 33 5689999998764221 2368999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
|++|+|... + |. . .....+++..+.++| +|||.||..+.+.
T Consensus 172 Ii~d~~~~~-~-----~~-------~-----~l~~~~~l~~~~~~L----kpgG~lv~~~~~~ 212 (304)
T 2o07_A 172 IITDSSDPM-G-----PA-------E-----SLFKESYYQLMKTAL----KEDGVLCCQGECQ 212 (304)
T ss_dssp EEEECC-----------------------------CHHHHHHHHHE----EEEEEEEEEEECT
T ss_pred EEECCCCCC-C-----cc-------h-----hhhHHHHHHHHHhcc----CCCeEEEEecCCc
Confidence 999987321 1 00 0 012345677777776 9999999887553
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.71 E-value=4e-09 Score=114.56 Aligned_cols=166 Identities=18% Similarity=0.127 Sum_probs=107.5
Q ss_pred cccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCC--------------CcEEEEEeCCHHHHHHHHHH
Q 010971 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKN--------------TGLIYANEMKASRLKSLTAN 222 (496)
Q Consensus 157 ~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~--------------~g~V~A~D~s~~rl~~l~~n 222 (496)
.|.|+--..-+.+.+.++.++++ +|||.|||+|+..+.++..+.. ...|+|+|+++..+..++.|
T Consensus 224 ~G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~N 302 (544)
T 3khk_A 224 GGQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMN 302 (544)
T ss_dssp STTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHH
T ss_pred CCeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHH
Confidence 35444333445666777888877 9999999999998887665421 35799999999999999999
Q ss_pred HHHcCCCe-EEEEecCCCCCccccCCCCcCEEEECCCCCCCCcc----cCCchhhcc--------CCHHHHHHHHHHHHH
Q 010971 223 LHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVI----SKDESVKTS--------KSLEDIQKCSYLQKQ 289 (496)
Q Consensus 223 l~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i----~r~p~~k~~--------~s~~~i~~l~~lQ~~ 289 (496)
+...|+.. +.+.++|....+.. ....||+||.+||.+..... ..++...+. ..+. ...+..
T Consensus 303 l~l~gi~~~i~i~~gDtL~~~~~-~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~-----~~~~~~ 376 (544)
T 3khk_A 303 MVIRGIDFNFGKKNADSFLDDQH-PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPT-----GNANFA 376 (544)
T ss_dssp HHHTTCCCBCCSSSCCTTTSCSC-TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCT-----TCTHHH
T ss_pred HHHhCCCcccceeccchhcCccc-ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCC-----cchhHH
Confidence 99999863 44467787654432 23689999999999864321 112211111 1011 111234
Q ss_pred HHHHHHHhhhhcCCCCcEEEEEeCC-CCCcC--CHHHH-HHHHHhCCc
Q 010971 290 LILAAIDMVDANSKSGGYIVYSTCS-IMVTE--NEAVI-DYALKKRDV 333 (496)
Q Consensus 290 LL~~A~~~l~~~lkpGG~LVYSTCS-i~~eE--NE~vV-~~~L~~~~~ 333 (496)
.|.+++..| +|||++++.+-. ++... .+.-+ ++++++..+
T Consensus 377 Fl~~~l~~L----k~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~~~l 420 (544)
T 3khk_A 377 WMLHMLYHL----APTGSMALLLANGSMSSNTNNEGEIRKTLVEQDLV 420 (544)
T ss_dssp HHHHHHHTE----EEEEEEEEEEETHHHHCCGGGHHHHHHHHHHTTCE
T ss_pred HHHHHHHHh----ccCceEEEEecchhhhcCcchHHHHHHHHHhCCcH
Confidence 688888887 999998877633 22222 34444 455665544
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.71 E-value=4e-07 Score=93.23 Aligned_cols=115 Identities=9% Similarity=0.034 Sum_probs=87.1
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
..+.+|||+|||+|..+..+++..++ ..++++|+ +..++.+++++...|+. ++.++.+|+......++ +.||+|++
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~ 254 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKE-VEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWM 254 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTT-CEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCC-CEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEE
Confidence 46789999999999999999998754 68999999 99999999999998884 69999999876420122 68999987
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCc
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT 318 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~e 318 (496)
-- + ...|+..+ ...+|.++.+.| +|||+|+.....+...
T Consensus 255 ~~------v-------lh~~~~~~-------~~~~l~~~~~~L----~pgG~l~i~e~~~~~~ 293 (363)
T 3dp7_A 255 SQ------F-------LDCFSEEE-------VISILTRVAQSI----GKDSKVYIMETLWDRQ 293 (363)
T ss_dssp ES------C-------STTSCHHH-------HHHHHHHHHHHC----CTTCEEEEEECCTTSC
T ss_pred ec------h-------hhhCCHHH-------HHHHHHHHHHhc----CCCcEEEEEeeccCCc
Confidence 21 1 11233332 245688888876 9999999988766443
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.6e-08 Score=109.82 Aligned_cols=117 Identities=14% Similarity=0.109 Sum_probs=87.6
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH------cCCCeEEEEecCCCCCcccc
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR------MGVTNTIVCNYDGNELPKVL 245 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r------~g~~nv~v~~~D~~~~~~~~ 245 (496)
..+...++.+|||+|||+|..+..|+...++...|+|+|+++..++.++++++. .|+.++.+..+|+..++..
T Consensus 715 elL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~- 793 (950)
T 3htx_A 715 KHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSR- 793 (950)
T ss_dssp HHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTT-
T ss_pred HHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcc-
Confidence 344556899999999999999998887754446999999999999999998774 3677899999999988743
Q ss_pred CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 246 ~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.+.||+|++. +++..-+ .. ....++..+.+.| +|| .|+.+|+..
T Consensus 794 -d~sFDlVV~~------eVLeHL~-------dp-------~l~~~L~eI~RvL----KPG-~LIISTPN~ 837 (950)
T 3htx_A 794 -LHDVDIGTCL------EVIEHME-------ED-------QACEFGEKVLSLF----HPK-LLIVSTPNY 837 (950)
T ss_dssp -SCSCCEEEEE------SCGGGSC-------HH-------HHHHHHHHHHHTT----CCS-EEEEEECBG
T ss_pred -cCCeeEEEEe------CchhhCC-------hH-------HHHHHHHHHHHHc----CCC-EEEEEecCc
Confidence 4789999982 2222111 11 1234567777776 998 888888653
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.7e-07 Score=91.16 Aligned_cols=113 Identities=12% Similarity=0.065 Sum_probs=86.4
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcCEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
+..++.+|||+|||+|..+..+++..++ ..++++|+ +..+..+++++...|+ .++.+..+|+.. + .+ ..||+|
T Consensus 166 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~--~p-~~~D~v 239 (332)
T 3i53_A 166 DWAALGHVVDVGGGSGGLLSALLTAHED-LSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-P--LP-AGAGGY 239 (332)
T ss_dssp CCGGGSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-C--CC-CSCSEE
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHCCC-CeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-C--CC-CCCcEE
Confidence 4456789999999999999999998754 68999999 9999999999999998 469999999862 2 22 379999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
++-- + ...|...+ ..++|.++.+.| +|||+|+.....+..
T Consensus 240 ~~~~------v-------lh~~~~~~-------~~~~l~~~~~~L----~pgG~l~i~e~~~~~ 279 (332)
T 3i53_A 240 VLSA------V-------LHDWDDLS-------AVAILRRCAEAA----GSGGVVLVIEAVAGD 279 (332)
T ss_dssp EEES------C-------GGGSCHHH-------HHHHHHHHHHHH----TTTCEEEEEECCCC-
T ss_pred EEeh------h-------hccCCHHH-------HHHHHHHHHHhc----CCCCEEEEEeecCCC
Confidence 9721 1 11233222 356788888887 999999988765543
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.6e-08 Score=102.56 Aligned_cols=115 Identities=17% Similarity=0.248 Sum_probs=84.4
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc--CC--CeEEEEecCCCCCccccCCCCcCE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--GV--TNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~--g~--~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
..+.+|||+|||+|+.+..++... +...|+++|+|+..++.+++++..+ ++ .++.++..|+..+.... .+.||+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-~~~fDv 192 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-TNTYDV 192 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-CSCEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc-CCCceE
Confidence 356899999999999999888653 3479999999999999999998763 23 56999999987643211 368999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
|++|++.. .| |.. .+ .+.+++..+.+.| +|||.|+..+.+.
T Consensus 193 Ii~d~~~p-~~-----~~~-------~l-----~~~~~l~~~~~~L----kpgG~lv~~~~~~ 233 (321)
T 2pt6_A 193 IIVDSSDP-IG-----PAE-------TL-----FNQNFYEKIYNAL----KPNGYCVAQCESL 233 (321)
T ss_dssp EEEECCCS-SS-----GGG-------GG-----SSHHHHHHHHHHE----EEEEEEEEEECCT
T ss_pred EEECCcCC-CC-----cch-------hh-----hHHHHHHHHHHhc----CCCcEEEEEcCCc
Confidence 99998631 11 110 00 1245677777776 9999999977654
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.6e-07 Score=93.79 Aligned_cols=114 Identities=19% Similarity=0.195 Sum_probs=87.3
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~ 249 (496)
...++..++.+|||+|||+|..+..++...+ ...++++|+ +..++.+++++...|+. ++.++..|+... ++ ..
T Consensus 176 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~-~~ 249 (360)
T 1tw3_A 176 AAAYDWTNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP---LP-RK 249 (360)
T ss_dssp HHHSCCTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC---CS-SC
T ss_pred HHhCCCccCcEEEEeCCcCcHHHHHHHHhCC-CCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC---CC-CC
Confidence 3445667889999999999999999998875 368999999 99999999999999986 699999998652 22 35
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
||+|++... + ..+...+ ...+|.++.+.| +|||+|+.++..
T Consensus 250 ~D~v~~~~v------l-------~~~~~~~-------~~~~l~~~~~~L----~pgG~l~i~e~~ 290 (360)
T 1tw3_A 250 ADAIILSFV------L-------LNWPDHD-------AVRILTRCAEAL----EPGGRILIHERD 290 (360)
T ss_dssp EEEEEEESC------G-------GGSCHHH-------HHHHHHHHHHTE----EEEEEEEEEECC
T ss_pred ccEEEEccc------c-------cCCCHHH-------HHHHHHHHHHhc----CCCcEEEEEEEe
Confidence 999987322 1 1122221 145778888876 999999988766
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.69 E-value=4.1e-08 Score=95.26 Aligned_cols=102 Identities=12% Similarity=0.125 Sum_probs=76.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
++.+|||+|||+|..+..++.. ...|+++|+|+..++.++++.. .+ +...|+..++ +..+.||.|++..
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~----~~--~~~~d~~~~~--~~~~~fD~v~~~~ 122 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV----KN--VVEAKAEDLP--FPSGAFEAVLALG 122 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC----SC--EEECCTTSCC--SCTTCEEEEEECS
T ss_pred CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC----CC--EEECcHHHCC--CCCCCEEEEEEcc
Confidence 7889999999999999988875 3589999999999999887754 23 6778888776 3347899999743
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.. ..+......+|..+.++| +|||+|+.++.+.
T Consensus 123 ~~---------------------~~~~~~~~~~l~~~~~~L----kpgG~l~~~~~~~ 155 (260)
T 2avn_A 123 DV---------------------LSYVENKDKAFSEIRRVL----VPDGLLIATVDNF 155 (260)
T ss_dssp SH---------------------HHHCSCHHHHHHHHHHHE----EEEEEEEEEEEBH
T ss_pred hh---------------------hhccccHHHHHHHHHHHc----CCCeEEEEEeCCh
Confidence 20 011011345677777776 9999999988764
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.9e-07 Score=93.74 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=88.9
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~ 249 (496)
+..++..++.+|||+|||+|..+..++...+ ...++++|+ +..++.+++++...|+.+ +.++.+|+...+ + ..
T Consensus 183 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~--~~ 256 (359)
T 1x19_A 183 LEEAKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES--Y--PE 256 (359)
T ss_dssp HHHCCCTTCCEEEEESCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSC--C--CC
T ss_pred HHhcCCCCCCEEEEECCcccHHHHHHHHHCC-CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCC--C--CC
Confidence 3445667889999999999999999999875 368999999 999999999999999876 999999998764 2 34
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
+|+|++.-. + ..+..+ ...++|.++.+.| +|||+|+..+....
T Consensus 257 ~D~v~~~~v------l-------h~~~d~-------~~~~~l~~~~~~L----~pgG~l~i~e~~~~ 299 (359)
T 1x19_A 257 ADAVLFCRI------L-------YSANEQ-------LSTIMCKKAFDAM----RSGGRLLILDMVID 299 (359)
T ss_dssp CSEEEEESC------G-------GGSCHH-------HHHHHHHHHHTTC----CTTCEEEEEEECCC
T ss_pred CCEEEEech------h-------ccCCHH-------HHHHHHHHHHHhc----CCCCEEEEEecccC
Confidence 599998321 1 122222 1345677777776 99999988776543
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.68 E-value=4e-08 Score=99.81 Aligned_cols=113 Identities=11% Similarity=0.037 Sum_probs=85.1
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCCC
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPC 259 (496)
.+|||+|||.|+.+..++...++ ..|+++|+++..++.+++++....-.++.++..|+..+......+.||+|++|++.
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~-~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQ-SRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTT-CEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CEEEEEECCcCHHHHHHHHHCCC-cEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 49999999999999999987654 58999999999999999988655456799999999876433334689999999763
Q ss_pred CCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 260 Sg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.. +. |...+ ..+++..+.+.| +|||.||..+.+-
T Consensus 170 ~~-~~----~~~L~-------------t~efl~~~~r~L----kpgGvlv~~~~~~ 203 (317)
T 3gjy_A 170 GA-IT----PQNFT-------------TVEFFEHCHRGL----APGGLYVANCGDH 203 (317)
T ss_dssp TS-CC----CGGGS-------------BHHHHHHHHHHE----EEEEEEEEEEEEC
T ss_pred cc-cc----chhhh-------------HHHHHHHHHHhc----CCCcEEEEEecCC
Confidence 31 11 11111 134567777776 9999999887654
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-07 Score=90.00 Aligned_cols=106 Identities=14% Similarity=0.147 Sum_probs=79.1
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.++.+|||+|||+|..+..++... ..|+++|+++..++.+++++ .++.+...|+..++. .+.||+|++-
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~---~~~~D~v~~~ 107 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRL---GRKFSAVVSM 107 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCCC---SSCEEEEEEC
T ss_pred CCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHccc---CCCCcEEEEc
Confidence 578899999999999999999875 38999999999999988764 457888999987763 3789999951
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
. +++.. ..+..+ ...+|..+.++| +|||+|+.+++..
T Consensus 108 ----~-~~~~~------~~~~~~-------~~~~l~~~~~~L----~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 108 ----F-SSVGY------LKTTEE-------LGAAVASFAEHL----EPGGVVVVEPWWF 144 (239)
T ss_dssp ----T-TGGGG------CCSHHH-------HHHHHHHHHHTE----EEEEEEEECCCCC
T ss_pred ----C-chHhh------cCCHHH-------HHHHHHHHHHhc----CCCeEEEEEeccC
Confidence 1 11111 111122 245677777776 9999999987665
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.3e-08 Score=90.85 Aligned_cols=100 Identities=18% Similarity=0.167 Sum_probs=75.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
++.+|||+|||+|..+..+ +...|+++|+++..++.+++++ .++.++..|+..++ +..+.||+|++..
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~--~~~~~fD~v~~~~ 103 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALP--FPGESFDVVLLFT 103 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCC--SCSSCEEEEEEES
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCC--CCCCcEEEEEEcC
Confidence 7899999999999988765 2238999999999999988876 56778889988776 3347899999753
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
. +..-+ . ...+|..+.++| +|||+|+.++...
T Consensus 104 ~------l~~~~------~----------~~~~l~~~~~~L----~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 104 T------LEFVE------D----------VERVLLEARRVL----RPGGALVVGVLEA 135 (211)
T ss_dssp C------TTTCS------C----------HHHHHHHHHHHE----EEEEEEEEEEECT
T ss_pred h------hhhcC------C----------HHHHHHHHHHHc----CCCCEEEEEecCC
Confidence 2 11111 1 134677777776 9999999987543
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=5e-08 Score=98.14 Aligned_cols=93 Identities=13% Similarity=0.069 Sum_probs=76.0
Q ss_pred EEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCC
Q 010971 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (496)
Q Consensus 160 ~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~ 239 (496)
|..+..-....+..+.+.++++|||+|||+|..|..|+.. .+.|+|+|+|+..+..+++++. +..++.++++|+.
T Consensus 32 fL~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l 106 (295)
T 3gru_A 32 FLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDAL 106 (295)
T ss_dssp EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTT
T ss_pred ccCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchh
Confidence 5444333344566778889999999999999999999987 3689999999999999999988 4568999999998
Q ss_pred CCccccCCCCcCEEEECCCC
Q 010971 240 ELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 240 ~~~~~~~~~~fD~VLlDaPC 259 (496)
.++.. ...||+|+.+.|+
T Consensus 107 ~~~~~--~~~fD~Iv~NlPy 124 (295)
T 3gru_A 107 KVDLN--KLDFNKVVANLPY 124 (295)
T ss_dssp TSCGG--GSCCSEEEEECCG
T ss_pred hCCcc--cCCccEEEEeCcc
Confidence 87532 2579999999994
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.9e-08 Score=98.02 Aligned_cols=90 Identities=14% Similarity=0.033 Sum_probs=72.0
Q ss_pred chhHHHhcCCCCC--CeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC--------C-CeEEEEe
Q 010971 167 SFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG--------V-TNTIVCN 235 (496)
Q Consensus 167 S~l~v~~L~~~~g--~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g--------~-~nv~v~~ 235 (496)
......++.+.+| .+|||++||.|..|+.+|.. .+.|+++|+++..+..+++++++.+ + .++.+++
T Consensus 75 ~e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~ 151 (258)
T 2oyr_A 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (258)
T ss_dssp GSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred HHHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEE
Confidence 3455667777778 99999999999999999987 2589999999999888888887652 4 4699999
Q ss_pred cCCCCCccccCCCCcCEEEECCCCC
Q 010971 236 YDGNELPKVLGLNTVDRVLLDAPCS 260 (496)
Q Consensus 236 ~D~~~~~~~~~~~~fD~VLlDaPCS 260 (496)
+|+..+...+. ..||+|++|||..
T Consensus 152 ~D~~~~L~~~~-~~fDvV~lDP~y~ 175 (258)
T 2oyr_A 152 ASSLTALTDIT-PRPQVVYLDPMFP 175 (258)
T ss_dssp SCHHHHSTTCS-SCCSEEEECCCCC
T ss_pred CCHHHHHHhCc-ccCCEEEEcCCCC
Confidence 99876533232 4699999999964
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.65 E-value=4.9e-10 Score=108.76 Aligned_cols=96 Identities=13% Similarity=0.118 Sum_probs=77.3
Q ss_pred EEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCC
Q 010971 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (496)
Q Consensus 160 ~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~ 239 (496)
|..+.......+..+.+.++++|||+|||+|..|.+++... +.|+|+|+++..++.+++++. +..++.++++|+.
T Consensus 11 fl~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~ 85 (245)
T 1yub_A 11 FLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDIL 85 (245)
T ss_dssp BCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCT
T ss_pred CCCCHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhc--cCCceEEEECChh
Confidence 55565555666777888899999999999999999999873 789999999999988888775 4568999999998
Q ss_pred CCccccCCCCcCEEEECCCCCCC
Q 010971 240 ELPKVLGLNTVDRVLLDAPCSGT 262 (496)
Q Consensus 240 ~~~~~~~~~~fD~VLlDaPCSg~ 262 (496)
.++.. ..+.| .|++++|+..+
T Consensus 86 ~~~~~-~~~~f-~vv~n~Py~~~ 106 (245)
T 1yub_A 86 QFQFP-NKQRY-KIVGNIPYHLS 106 (245)
T ss_dssp TTTCC-CSSEE-EEEEECCSSSC
T ss_pred hcCcc-cCCCc-EEEEeCCcccc
Confidence 87521 12468 89999997654
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=8.8e-07 Score=90.91 Aligned_cols=117 Identities=12% Similarity=0.022 Sum_probs=89.1
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCc
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~f 250 (496)
..++..++.+|||+|||+|..+..++...++ ..++++|+ +..++.+++++...|+. ++.+...|+.. + .+ ..|
T Consensus 196 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~--~p-~~~ 269 (369)
T 3gwz_A 196 AAYDFSGAATAVDIGGGRGSLMAAVLDAFPG-LRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-T--IP-DGA 269 (369)
T ss_dssp HHSCCTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-C--CC-SSC
T ss_pred HhCCCccCcEEEEeCCCccHHHHHHHHHCCC-CeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-C--CC-CCc
Confidence 3345677899999999999999999998654 68999999 99999999999999974 59999999872 2 22 379
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCc
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT 318 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~e 318 (496)
|+|++-- + ...++... ..++|.++.+.| +|||+|+..+..+...
T Consensus 270 D~v~~~~------v-------lh~~~d~~-------~~~~L~~~~~~L----~pgG~l~i~e~~~~~~ 313 (369)
T 3gwz_A 270 DVYLIKH------V-------LHDWDDDD-------VVRILRRIATAM----KPDSRLLVIDNLIDER 313 (369)
T ss_dssp SEEEEES------C-------GGGSCHHH-------HHHHHHHHHTTC----CTTCEEEEEEEBCCSS
T ss_pred eEEEhhh------h-------hccCCHHH-------HHHHHHHHHHHc----CCCCEEEEEEeccCCC
Confidence 9998721 1 11233222 245788888876 9999999988766543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.64 E-value=3.6e-08 Score=95.78 Aligned_cols=98 Identities=15% Similarity=0.233 Sum_probs=76.0
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.++.+|||+|||+|..+..++..++ .+.|+++|+++.+++.++++. .++.+...|+..++ +..+.||+|++.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~--~~~~~fD~v~~~ 155 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLP--FSDTSMDAIIRI 155 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCS--BCTTCEEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCC--CCCCceeEEEEe
Confidence 5789999999999999999998764 368999999999999887764 45678888988776 334789999963
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.. + ..+..+.++| +|||+|+.++...
T Consensus 156 ~~----------~-------------------~~l~~~~~~L----~pgG~l~~~~~~~ 181 (269)
T 1p91_A 156 YA----------P-------------------CKAEELARVV----KPGGWVITATPGP 181 (269)
T ss_dssp SC----------C-------------------CCHHHHHHHE----EEEEEEEEEEECT
T ss_pred CC----------h-------------------hhHHHHHHhc----CCCcEEEEEEcCH
Confidence 11 0 0255666665 9999999987543
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.64 E-value=4.4e-07 Score=91.84 Aligned_cols=117 Identities=15% Similarity=0.124 Sum_probs=89.4
Q ss_pred cCCCC-CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcC
Q 010971 174 LAPQE-KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 174 L~~~~-g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD 251 (496)
++..+ +.+|||+|||+|..+..++...++ ..++++|+ +..+..+++++...++.+ +.+..+|+...+... ...||
T Consensus 174 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~D 250 (352)
T 3mcz_A 174 LGVFARARTVIDLAGGHGTYLAQVLRRHPQ-LTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE-GGAAD 250 (352)
T ss_dssp CGGGTTCCEEEEETCTTCHHHHHHHHHCTT-CEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT-TCCEE
T ss_pred CCCcCCCCEEEEeCCCcCHHHHHHHHhCCC-CeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC-CCCcc
Confidence 34455 889999999999999999998764 78999999 889999999999999864 999999988764212 35799
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
+|++-- ++ ..++..+ ...+|.++.+.| +|||+|+.....+..
T Consensus 251 ~v~~~~------vl-------h~~~~~~-------~~~~l~~~~~~L----~pgG~l~i~e~~~~~ 292 (352)
T 3mcz_A 251 VVMLND------CL-------HYFDARE-------AREVIGHAAGLV----KPGGALLILTMTMND 292 (352)
T ss_dssp EEEEES------CG-------GGSCHHH-------HHHHHHHHHHTE----EEEEEEEEEEECCCT
T ss_pred EEEEec------cc-------ccCCHHH-------HHHHHHHHHHHc----CCCCEEEEEEeccCC
Confidence 999721 11 1233322 255788888876 999999988776544
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-07 Score=92.28 Aligned_cols=138 Identities=15% Similarity=0.112 Sum_probs=84.7
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc-----------------CC-----------
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-----------------GV----------- 228 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~-----------------g~----------- 228 (496)
.++.+|||+|||+|. +..++.... ...|+++|+|+..++.+++++... |.
T Consensus 70 ~~~~~vLDiGcG~G~-~~~l~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 147 (289)
T 2g72_A 70 VSGRTLIDIGSGPTV-YQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 147 (289)
T ss_dssp SCCSEEEEETCTTCC-GGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCeEEEECCCcCh-HHHHhhccC-CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHH
Confidence 378899999999999 443333322 358999999999999988866431 10
Q ss_pred --CeEEEEecCCCC-Ccc---ccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 010971 229 --TNTIVCNYDGNE-LPK---VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANS 302 (496)
Q Consensus 229 --~nv~v~~~D~~~-~~~---~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~l 302 (496)
..+.++..|+.. +|. .++.+.||+|++-. + ...+..-......+|..+.++|
T Consensus 148 ~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~------~------------l~~~~~~~~~~~~~l~~~~r~L---- 205 (289)
T 2g72_A 148 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAF------C------------LEAVSPDLASFQRALDHITTLL---- 205 (289)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEES------C------------HHHHCSSHHHHHHHHHHHHTTE----
T ss_pred HhhhceEEecccCCCCCccccccCCCCCCEEEehh------h------------hhhhcCCHHHHHHHHHHHHHhc----
Confidence 014567778876 331 12335699999731 1 1110000112345677777775
Q ss_pred CCCcEEEEEeCCC------------CCcCCHHHHHHHHHhCCcEEeec
Q 010971 303 KSGGYIVYSTCSI------------MVTENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 303 kpGG~LVYSTCSi------------~~eENE~vV~~~L~~~~~~lv~~ 338 (496)
||||+|+.+.+.- ..--+.+.+..+|...+|+++.+
T Consensus 206 kpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 253 (289)
T 2g72_A 206 RPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDL 253 (289)
T ss_dssp EEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred CCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEe
Confidence 9999999874211 00124556666777777776654
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.4e-08 Score=96.35 Aligned_cols=103 Identities=10% Similarity=0.114 Sum_probs=75.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
.+.+|||+|||+|..+..|+... ..|+|+|+|+.+++.+++ ..++.+.++|+..++ ++.++||.|++--
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~---~~v~gvD~s~~ml~~a~~------~~~v~~~~~~~e~~~--~~~~sfD~v~~~~ 107 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFF---ERVHAVDPGEAQIRQALR------HPRVTYAVAPAEDTG--LPPASVDVAIAAQ 107 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTC---SEEEEEESCHHHHHTCCC------CTTEEEEECCTTCCC--CCSSCEEEEEECS
T ss_pred CCCCEEEEcCCCCHHHHHHHHhC---CEEEEEeCcHHhhhhhhh------cCCceeehhhhhhhc--ccCCcccEEEEee
Confidence 46799999999999999888753 589999999998876542 357899999998876 4458999999721
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCc
Q 010971 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT 318 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~e 318 (496)
++ .|. .. .+.+.++.++| ||||+|++.+.+....
T Consensus 108 ------~~------h~~-~~----------~~~~~e~~rvL----kpgG~l~~~~~~~~~~ 141 (257)
T 4hg2_A 108 ------AM------HWF-DL----------DRFWAELRRVA----RPGAVFAAVTYGLTRV 141 (257)
T ss_dssp ------CC------TTC-CH----------HHHHHHHHHHE----EEEEEEEEEEECCCBC
T ss_pred ------eh------hHh-hH----------HHHHHHHHHHc----CCCCEEEEEECCCCCC
Confidence 11 011 11 12466677765 9999999988876543
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.7e-07 Score=87.65 Aligned_cols=102 Identities=17% Similarity=0.108 Sum_probs=73.8
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.++.+|||+|||+|..+..++.. + ..++++|+++..++.++.++. .+...|+..+...+..+.||.|++.
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~--~-~~~~~~D~~~~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~fD~v~~~ 100 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN--G-TRVSGIEAFPEAAEQAKEKLD-------HVVLGDIETMDMPYEEEQFDCVIFG 100 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT--T-CEEEEEESSHHHHHHHHTTSS-------EEEESCTTTCCCCSCTTCEEEEEEE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc--C-CeEEEEeCCHHHHHHHHHhCC-------cEEEcchhhcCCCCCCCccCEEEEC
Confidence 67899999999999999988876 3 799999999999888876542 4667887764322444789999974
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
. ++..-+ .+ ..+|..+.++| +|||+|+.++-.
T Consensus 101 ~------~l~~~~------~~----------~~~l~~~~~~L----~~gG~l~~~~~~ 132 (230)
T 3cc8_A 101 D------VLEHLF------DP----------WAVIEKVKPYI----KQNGVILASIPN 132 (230)
T ss_dssp S------CGGGSS------CH----------HHHHHHTGGGE----EEEEEEEEEEEC
T ss_pred C------hhhhcC------CH----------HHHHHHHHHHc----CCCCEEEEEeCC
Confidence 2 221111 11 24566666665 999999998743
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=8e-08 Score=95.06 Aligned_cols=113 Identities=10% Similarity=0.084 Sum_probs=74.4
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcC---CCcEE--EEEeCCHHHHHHHHHHHHHc-CCCeEEEE--ecCCCCCcc----
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMK---NTGLI--YANEMKASRLKSLTANLHRM-GVTNTIVC--NYDGNELPK---- 243 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~---~~g~V--~A~D~s~~rl~~l~~nl~r~-g~~nv~v~--~~D~~~~~~---- 243 (496)
+.++.+|||+|||+|..|..++..+. +...| +++|+|+.+++.+++++... ++.++.+. ..|+..++.
T Consensus 50 ~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (292)
T 2aot_A 50 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE 129 (292)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHT
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcc
Confidence 45788999999999998875544331 23444 99999999999999998764 66766554 444433321
Q ss_pred ccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 244 ~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.+..+.||+|++-. ++. +-.. ....|..+.++| ||||+|+.++.+
T Consensus 130 ~~~~~~fD~V~~~~------~l~------~~~d----------~~~~l~~~~r~L----kpgG~l~i~~~~ 174 (292)
T 2aot_A 130 KKELQKWDFIHMIQ------MLY------YVKD----------IPATLKFFHSLL----GTNAKMLIIVVS 174 (292)
T ss_dssp TTCCCCEEEEEEES------CGG------GCSC----------HHHHHHHHHHTE----EEEEEEEEEEEC
T ss_pred ccCCCceeEEEEee------eee------ecCC----------HHHHHHHHHHHc----CCCcEEEEEEec
Confidence 02347899998721 111 1111 123567777765 999999988654
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=3.9e-08 Score=99.32 Aligned_cols=118 Identities=12% Similarity=0.110 Sum_probs=84.5
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc--C---CCeEEEEecCCCCCccccCCCCcC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--G---VTNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~--g---~~nv~v~~~D~~~~~~~~~~~~fD 251 (496)
..+.+|||+|||+|+.+..++... +...|+++|+++..++.+++++..+ | -.++.++..|+..+... ..+.||
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~-~~~~fD 153 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER-TEERYD 153 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH-CCCCEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh-cCCCcc
Confidence 345799999999999999888754 3468999999999999999998762 2 35799999999775221 236899
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
+|++|++... + . ..|.... ...+++..+.+.| +|||.|+..+.+.
T Consensus 154 ~Ii~d~~~~~-~-~-~~~~~~l------------~~~~~l~~~~~~L----kpgG~lv~~~~~~ 198 (314)
T 1uir_A 154 VVIIDLTDPV-G-E-DNPARLL------------YTVEFYRLVKAHL----NPGGVMGMQTGMI 198 (314)
T ss_dssp EEEEECCCCB-S-T-TCGGGGG------------SSHHHHHHHHHTE----EEEEEEEEEEEEE
T ss_pred EEEECCCCcc-c-c-cCcchhc------------cHHHHHHHHHHhc----CCCcEEEEEccCc
Confidence 9999987421 0 0 0110000 0245677777776 9999999876553
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-07 Score=89.10 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=83.7
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaP 258 (496)
+.+|||+|||+|..+..++.. +++|+++..++.++.+ ++.+...|+..++ +..+.||+|++...
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~--~~~~~fD~v~~~~~ 111 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-------GVFVLKGTAENLP--LKDESFDFALMVTT 111 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-------TCEEEECBTTBCC--SCTTCEEEEEEESC
T ss_pred CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-------CCEEEEcccccCC--CCCCCeeEEEEcch
Confidence 889999999999998766532 9999999999988877 5677888887765 33468999997432
Q ss_pred CCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCc--------------------
Q 010971 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT-------------------- 318 (496)
Q Consensus 259 CSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~e-------------------- 318 (496)
+..-+ . ...+|..+.++| +|||+|+.++......
T Consensus 112 ------l~~~~------~----------~~~~l~~~~~~L----~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (219)
T 1vlm_A 112 ------ICFVD------D----------PERALKEAYRIL----KKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARF 165 (219)
T ss_dssp ------GGGSS------C----------HHHHHHHHHHHE----EEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCC
T ss_pred ------Hhhcc------C----------HHHHHHHHHHHc----CCCcEEEEEEeCCccHHHHHHHHHhcCcchhccccc
Confidence 11111 1 134677777776 9999999987543211
Q ss_pred CCHHHHHHHHHhCCcEEeec
Q 010971 319 ENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 319 ENE~vV~~~L~~~~~~lv~~ 338 (496)
=+...+..+|++.+++++.+
T Consensus 166 ~~~~~l~~~l~~~Gf~~~~~ 185 (219)
T 1vlm_A 166 FSTEELMDLMRKAGFEEFKV 185 (219)
T ss_dssp CCHHHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHCCCeEEEE
Confidence 14556666777777777665
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=6.7e-08 Score=100.36 Aligned_cols=117 Identities=17% Similarity=0.244 Sum_probs=82.7
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
.+|.+|||+|||+|..++.+|+. +...|+|+|.++ .+..++++++.+|+.+ |.++++|...+. + +..||+|++
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~a--GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~--l-pe~~Dvivs 155 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQA--GARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVE--L-PEQVDAIVS 155 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCC--C-SSCEEEEEC
T ss_pred cCCCEEEEeCCCccHHHHHHHHh--CCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeec--C-CccccEEEe
Confidence 36899999999999988766654 346899999996 7889999999999976 999999998874 2 268999997
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC--CcCCHH
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM--VTENEA 322 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~--~eENE~ 322 (496)
+.- |.+++.. ..+ ..+|...-++ |+|||.++-+.|+++ +-|.+.
T Consensus 156 E~~--~~~l~~e----------~~l-------~~~l~a~~r~----Lkp~G~~iP~~atly~apie~~~ 201 (376)
T 4hc4_A 156 EWM--GYGLLHE----------SML-------SSVLHARTKW----LKEGGLLLPASAELFIVPISDQM 201 (376)
T ss_dssp CCC--BTTBTTT----------CSH-------HHHHHHHHHH----EEEEEEEESCEEEEEEEEECCHH
T ss_pred ecc--ccccccc----------chh-------hhHHHHHHhh----CCCCceECCccceEEEEEeccch
Confidence 632 3322211 111 1123333344 599999998777754 345543
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.4e-07 Score=86.70 Aligned_cols=112 Identities=17% Similarity=0.178 Sum_probs=79.7
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
...++.+|||+|||+|..+..++ ..|+++|+++. ++.+...|+..++ +..+.||+|+
T Consensus 64 ~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~---------------~~~~~~~d~~~~~--~~~~~fD~v~ 120 (215)
T 2zfu_A 64 QRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL---------------DPRVTVCDMAQVP--LEDESVDVAV 120 (215)
T ss_dssp TSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS---------------STTEEESCTTSCS--CCTTCEEEEE
T ss_pred ccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC---------------CceEEEeccccCC--CCCCCEeEEE
Confidence 34578899999999999887652 57999999987 4556778887765 3347899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcE
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVK 334 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~ 334 (496)
+... +. +++ ...+|..+.++| +|||+|+.+++... ..+...+..+++..+++
T Consensus 121 ~~~~------l~-~~~----------------~~~~l~~~~~~L----~~gG~l~i~~~~~~-~~~~~~~~~~l~~~Gf~ 172 (215)
T 2zfu_A 121 FCLS------LM-GTN----------------IRDFLEEANRVL----KPGGLLKVAEVSSR-FEDVRTFLRAVTKLGFK 172 (215)
T ss_dssp EESC------CC-SSC----------------HHHHHHHHHHHE----EEEEEEEEEECGGG-CSCHHHHHHHHHHTTEE
T ss_pred Eehh------cc-ccC----------------HHHHHHHHHHhC----CCCeEEEEEEcCCC-CCCHHHHHHHHHHCCCE
Confidence 7432 11 111 134577777776 99999999887642 23666777778787777
Q ss_pred Eee
Q 010971 335 LVP 337 (496)
Q Consensus 335 lv~ 337 (496)
++.
T Consensus 173 ~~~ 175 (215)
T 2zfu_A 173 IVS 175 (215)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.6e-07 Score=89.90 Aligned_cols=112 Identities=14% Similarity=0.057 Sum_probs=85.8
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCE
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
++..+ .+|||+|||+|..+..++...++ ..++++|+ +..++.+++++...|+. ++.++.+|+.. + ++ ..||+
T Consensus 164 ~~~~~-~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~--~~-~~~D~ 236 (334)
T 2ip2_A 164 LDFRG-RSFVDVGGGSGELTKAILQAEPS-ARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-E--VP-SNGDI 236 (334)
T ss_dssp SCCTT-CEEEEETCTTCHHHHHHHHHCTT-CEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-C--CC-SSCSE
T ss_pred CCCCC-CEEEEeCCCchHHHHHHHHHCCC-CEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-C--CC-CCCCE
Confidence 34555 89999999999999999988754 68999999 99999999999888864 59999999866 2 22 57999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
|++.-. ...|...+ ...+|.++.+.| +|||+|+.....+.
T Consensus 237 v~~~~v-------------l~~~~~~~-------~~~~l~~~~~~L----~pgG~l~i~e~~~~ 276 (334)
T 2ip2_A 237 YLLSRI-------------IGDLDEAA-------SLRLLGNCREAM----AGDGRVVVIERTIS 276 (334)
T ss_dssp EEEESC-------------GGGCCHHH-------HHHHHHHHHHHS----CTTCEEEEEECCBC
T ss_pred EEEchh-------------ccCCCHHH-------HHHHHHHHHHhc----CCCCEEEEEEeccC
Confidence 997321 11233322 246788888876 99999998876654
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-07 Score=101.79 Aligned_cols=168 Identities=17% Similarity=0.181 Sum_probs=108.8
Q ss_pred ccc-EEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCC------------CcEEEEEeCCHHHHHHHHHHH
Q 010971 157 AGF-YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKN------------TGLIYANEMKASRLKSLTANL 223 (496)
Q Consensus 157 ~G~-~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~------------~g~V~A~D~s~~rl~~l~~nl 223 (496)
.|. |+.+ .-+.+.+.++.|++|++|+|-|||+||..+.+...+.. ...++++|+++.....++-|+
T Consensus 196 ~GqfyTP~-~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl 274 (530)
T 3ufb_A 196 SGEFYTPR-PVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNL 274 (530)
T ss_dssp CCCCCCCH-HHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHH
T ss_pred CceECCcH-HHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHH
Confidence 353 4444 33556788899999999999999999998877765532 246999999999999999999
Q ss_pred HHcCCCeEEEEecCCCCCccc--cCCCCcCEEEECCCCCCCCc---ccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhh
Q 010971 224 HRMGVTNTIVCNYDGNELPKV--LGLNTVDRVLLDAPCSGTGV---ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMV 298 (496)
Q Consensus 224 ~r~g~~nv~v~~~D~~~~~~~--~~~~~fD~VLlDaPCSg~G~---i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l 298 (496)
--.|+....+...|....+.. .....||+||.+||.++..- ..+.+.. ...+ ..+.-.+.+++..|
T Consensus 275 ~lhg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~-~~~~--------~~~~~Fl~~~l~~L 345 (530)
T 3ufb_A 275 LLHGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPED-MQTA--------ETAMLFLQLIMRKL 345 (530)
T ss_dssp HHHTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGG-GCCC--------BHHHHHHHHHHHHB
T ss_pred HhcCCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchh-cccc--------hhHHHHHHHHHHHh
Confidence 888887666777887654321 12257999999999976421 1111111 0111 22334566677665
Q ss_pred h---hcCCCCcEEEEEeCC--CCCcCCHH-HHHHHHHhCCcE
Q 010971 299 D---ANSKSGGYIVYSTCS--IMVTENEA-VIDYALKKRDVK 334 (496)
Q Consensus 299 ~---~~lkpGG~LVYSTCS--i~~eENE~-vV~~~L~~~~~~ 334 (496)
. ..+++||++++.+-. ++..-.+. +-++++++..+.
T Consensus 346 k~~~~~l~~gGr~avVlP~g~Lf~~~~~~~iRk~Lle~~~l~ 387 (530)
T 3ufb_A 346 KRPGHGSDNGGRAAVVVPNGTLFSDGISARIKEELLKNFNLH 387 (530)
T ss_dssp CCTTSSSSSCCEEEEEEEHHHHHCCTHHHHHHHHHHHHSEEE
T ss_pred hhhhhccCCCceEEEEecchhhhccchHHHHHHHHhhcCEEE
Confidence 1 112479998876542 33322233 455777776543
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.8e-07 Score=104.81 Aligned_cols=148 Identities=17% Similarity=0.180 Sum_probs=93.2
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCC--CcEEEEEeCCHHHHHHH--HHHHHH----cCCCeEEEEecCCCCCccccCCC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKN--TGLIYANEMKASRLKSL--TANLHR----MGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~--~g~V~A~D~s~~rl~~l--~~nl~r----~g~~nv~v~~~D~~~~~~~~~~~ 248 (496)
.++.+|||.|||+|+..+.++..++. ...|+|+|+++..+..+ +.|+.. .|+.+..+...|...... ....
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~-~~~~ 398 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNP-EDFA 398 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCG-GGGT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccc-cccC
Confidence 46899999999999999998887642 35799999999999888 666554 345444555556554321 1236
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHH-----------HHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC-CC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK-----------CSYLQKQLILAAIDMVDANSKSGGYIVYSTCS-IM 316 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~-----------l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS-i~ 316 (496)
.||+|+++||.++..... ...... ...+.. ...+...++.+++.+| ++||++++.+-. ++
T Consensus 399 kFDVVIgNPPYg~~~~~~---~e~kd~-~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lL----KpGGrLAfIlP~s~L 470 (878)
T 3s1s_A 399 NVSVVVMNPPYVSGVTDP---AIKRKF-AHKIIQLTGNRPQTLFGQIGVEALFLELVTELV----QDGTVISAIMPKQYL 470 (878)
T ss_dssp TEEEEEECCBCCSSCCCH---HHHHHH-HHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHS----CTTCEEEEEEETHHH
T ss_pred CCCEEEECCCccccccch---hhhhhH-HHHhhhhccccccccccccchHHHHHHHHHHhc----CCCcEEEEEEChHHh
Confidence 899999999997543211 100000 000000 0124566788999986 999999887644 43
Q ss_pred CcC---CHHHHHHHHHhCCc
Q 010971 317 VTE---NEAVIDYALKKRDV 333 (496)
Q Consensus 317 ~eE---NE~vV~~~L~~~~~ 333 (496)
... ...+-++++++..+
T Consensus 471 f~sg~~~kkLRk~LLe~~~I 490 (878)
T 3s1s_A 471 TAQGNESKAFREFLVGNFGL 490 (878)
T ss_dssp HCCSHHHHHHHHHHTTTTCE
T ss_pred ccCChHHHHHHHHHHhCCCe
Confidence 222 23444555555543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-07 Score=93.52 Aligned_cols=100 Identities=11% Similarity=-0.032 Sum_probs=77.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc----CCCeEEEEecCCCCCccccCCCCcCEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM----GVTNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~----g~~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
.+.+|||+|||.|+.+..++.. + +.|+++|+++..++.+++++..+ .-.++.++.+|+..+. +.||+|
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~--~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-----~~fD~I 143 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY--D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-----KKYDLI 143 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS--S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-----CCEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhC--C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-----hhCCEE
Confidence 4579999999999999888776 4 79999999999999998876442 2346889999998764 579999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
++|++ +|.. .+..+.+.| +|||.||..+++..
T Consensus 144 i~d~~---------dp~~------------------~~~~~~~~L----~pgG~lv~~~~~~~ 175 (262)
T 2cmg_A 144 FCLQE---------PDIH------------------RIDGLKRML----KEDGVFISVAKHPL 175 (262)
T ss_dssp EESSC---------CCHH------------------HHHHHHTTE----EEEEEEEEEEECTT
T ss_pred EECCC---------ChHH------------------HHHHHHHhc----CCCcEEEEEcCCcc
Confidence 99953 2211 455566665 99999999876643
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.49 E-value=8.6e-07 Score=84.50 Aligned_cols=116 Identities=19% Similarity=0.159 Sum_probs=81.4
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEecCCCCC------------
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV---TNTIVCNYDGNEL------------ 241 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~---~nv~v~~~D~~~~------------ 241 (496)
+...+||++|+ |..|+.+|.+ . .|+|+++|.++.+.+.+++++++.|+ .+|.+..+|+...
T Consensus 29 ~~a~~VLEiGt--GySTl~lA~~-~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~ 104 (202)
T 3cvo_A 29 EEAEVILEYGS--GGSTVVAAEL-P-GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKW 104 (202)
T ss_dssp HHCSEEEEESC--SHHHHHHHTS-T-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred hCCCEEEEECc--hHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhh
Confidence 45789999997 6777777764 3 58999999999999999999999995 5688999997542
Q ss_pred ---ccc------c-CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 242 ---PKV------L-GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 242 ---~~~------~-~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
+.. . ..+.||.||+|+. +. + .-+..++.++ +|||+||.-
T Consensus 105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~----------------k~----------~-~~~~~~l~~l----~~GG~Iv~D 153 (202)
T 3cvo_A 105 RSYPDYPLAVWRTEGFRHPDVVLVDGR----------------FR----------V-GCALATAFSI----TRPVTLLFD 153 (202)
T ss_dssp GGTTHHHHGGGGCTTCCCCSEEEECSS----------------SH----------H-HHHHHHHHHC----SSCEEEEET
T ss_pred hhHHHHhhhhhccccCCCCCEEEEeCC----------------Cc----------h-hHHHHHHHhc----CCCeEEEEe
Confidence 211 1 1267999999985 00 0 1234456665 999999775
Q ss_pred eCCCCCcCCHHHHHHHHH
Q 010971 312 TCSIMVTENEAVIDYALK 329 (496)
Q Consensus 312 TCSi~~eENE~vV~~~L~ 329 (496)
..+.. .....|..++.
T Consensus 154 Nv~~r--~~y~~v~~~~~ 169 (202)
T 3cvo_A 154 DYSQR--RWQHQVEEFLG 169 (202)
T ss_dssp TGGGC--SSGGGGHHHHC
T ss_pred CCcCC--cchHHHHHHHh
Confidence 44333 23344455553
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-06 Score=86.84 Aligned_cols=111 Identities=13% Similarity=0.144 Sum_probs=78.6
Q ss_pred CCCeEeeccCCC---chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc---------cc
Q 010971 178 EKERVIDMAAAP---GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---------VL 245 (496)
Q Consensus 178 ~g~~VLDmcAgp---GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~---------~~ 245 (496)
+..+|||+|||+ |..+..++... +.+.|+++|+|+..++.+++++.. ..++.++.+|+..... .+
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~-p~~~v~~vD~sp~~l~~Ar~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVN-PDARVVYVDIDPMVLTHGRALLAK--DPNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHC-TTCEEEEEESSHHHHHHHHHHHTT--CTTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhC-CCCEEEEEECChHHHHHHHHhcCC--CCCeEEEEeeCCCchhhhccchhhccC
Confidence 457999999999 98765555544 347999999999999999998843 3468999999976421 12
Q ss_pred CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 246 ~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
....||.|++- +++..-|+ ++ ...+|..+.+.| +|||+|+.++...
T Consensus 154 d~~~~d~v~~~------~vlh~~~d-------~~-------~~~~l~~~~~~L----~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 154 DFSRPAAIMLV------GMLHYLSP-------DV-------VDRVVGAYRDAL----APGSYLFMTSLVD 199 (274)
T ss_dssp CTTSCCEEEET------TTGGGSCT-------TT-------HHHHHHHHHHHS----CTTCEEEEEEEBC
T ss_pred CCCCCEEEEEe------chhhhCCc-------HH-------HHHHHHHHHHhC----CCCcEEEEEEecC
Confidence 23579999873 22211111 11 245678888876 9999999988764
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.9e-07 Score=91.93 Aligned_cols=87 Identities=16% Similarity=0.202 Sum_probs=70.6
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc--c
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK--V 244 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~--~ 244 (496)
....+..+++.+|++|||+|||+|..|..|+... +.|+|+|+|+..+..+++++.. ..++.++++|+..++- .
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~~~~~~ 92 (255)
T 3tqs_A 18 LQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQFDFSSV 92 (255)
T ss_dssp HHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTCCGGGS
T ss_pred HHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhCCHHHh
Confidence 3445667788999999999999999999888752 6899999999999999999875 4689999999988742 1
Q ss_pred cCCCCcCEEEECCCC
Q 010971 245 LGLNTVDRVLLDAPC 259 (496)
Q Consensus 245 ~~~~~fD~VLlDaPC 259 (496)
.....|| |+.++|+
T Consensus 93 ~~~~~~~-vv~NlPY 106 (255)
T 3tqs_A 93 KTDKPLR-VVGNLPY 106 (255)
T ss_dssp CCSSCEE-EEEECCH
T ss_pred ccCCCeE-EEecCCc
Confidence 1124677 8899993
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-07 Score=92.98 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=51.0
Q ss_pred CCCCCeEeeccCCCchHHHHHHHH--cCC-CcEEEEEeC--CHHHHHHHHHHHHHcCCCeEEEEec-CCCCCccccCCCC
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAAL--MKN-TGLIYANEM--KASRLKSLTANLHRMGVTNTIVCNY-DGNELPKVLGLNT 249 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l--~~~-~g~V~A~D~--s~~rl~~l~~nl~r~g~~nv~v~~~-D~~~~~~~~~~~~ 249 (496)
++||.+|||+||||||+|.+++++ ++. .|.++|+|+ .+-.. ...|+.-+.+..+ |++.+. ...
T Consensus 71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~-------~~~Gv~~i~~~~G~Df~~~~----~~~ 139 (269)
T 2px2_A 71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM-------QSYGWNIVTMKSGVDVFYKP----SEI 139 (269)
T ss_dssp CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC-------CSTTGGGEEEECSCCGGGSC----CCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc-------cCCCceEEEeeccCCccCCC----CCC
Confidence 578999999999999999999887 432 467788883 22100 0023333455556 887643 357
Q ss_pred cCEEEECCCCCCCCc
Q 010971 250 VDRVLLDAPCSGTGV 264 (496)
Q Consensus 250 fD~VLlDaPCSg~G~ 264 (496)
||+||+|.--+ +|.
T Consensus 140 ~DvVLSDMAPn-SG~ 153 (269)
T 2px2_A 140 SDTLLCDIGES-SPS 153 (269)
T ss_dssp CSEEEECCCCC-CSC
T ss_pred CCEEEeCCCCC-CCc
Confidence 99999994334 663
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=3.4e-07 Score=88.99 Aligned_cols=93 Identities=13% Similarity=0.111 Sum_probs=71.9
Q ss_pred EEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCC
Q 010971 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (496)
Q Consensus 160 ~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~ 239 (496)
|.++.......+..+++.++.+|||+|||+|..|..++... +.|+|+|+|+..++.+++++.. ..++.++++|+.
T Consensus 12 fl~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~ 86 (244)
T 1qam_A 12 FITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDIL 86 (244)
T ss_dssp BCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGG
T ss_pred ccCCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHH
Confidence 43443333444566677889999999999999999999873 6899999999999999998864 357999999998
Q ss_pred CCccccCCCCcCEEEECCCC
Q 010971 240 ELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 240 ~~~~~~~~~~fD~VLlDaPC 259 (496)
.++... ...| .|+.|+|+
T Consensus 87 ~~~~~~-~~~~-~vv~nlPy 104 (244)
T 1qam_A 87 QFKFPK-NQSY-KIFGNIPY 104 (244)
T ss_dssp GCCCCS-SCCC-EEEEECCG
T ss_pred hCCccc-CCCe-EEEEeCCc
Confidence 775211 1345 78999995
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.40 E-value=2.1e-07 Score=92.90 Aligned_cols=84 Identities=20% Similarity=0.213 Sum_probs=71.7
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc---CC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---GL 247 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~---~~ 247 (496)
+.+|++++|..+||+++|.||.|..|++. .|.|+|+|.++..++.+++ +.. .++.+++.|+..+...+ +.
T Consensus 15 le~L~~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~~L~~~g~ 87 (285)
T 1wg8_A 15 LDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKRHLAALGV 87 (285)
T ss_dssp HHHHTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHHHHHHTTC
T ss_pred HHhhCCCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHHHHHHcCC
Confidence 56678899999999999999999999987 4899999999999999888 644 57999999998875443 22
Q ss_pred CCcCEEEECCCCCC
Q 010971 248 NTVDRVLLDAPCSG 261 (496)
Q Consensus 248 ~~fD~VLlDaPCSg 261 (496)
..||.||+|.++|.
T Consensus 88 ~~vDgIL~DLGvSS 101 (285)
T 1wg8_A 88 ERVDGILADLGVSS 101 (285)
T ss_dssp SCEEEEEEECSCCH
T ss_pred CCcCEEEeCCcccc
Confidence 57999999999886
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=3e-07 Score=96.11 Aligned_cols=101 Identities=17% Similarity=0.170 Sum_probs=73.1
Q ss_pred CCCeEeeccCC------CchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc--c--CC
Q 010971 178 EKERVIDMAAA------PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--L--GL 247 (496)
Q Consensus 178 ~g~~VLDmcAg------pGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~--~--~~ 247 (496)
++.+|||+||| +||.++.++..+.+.+.|+++|+++.+. ....++.++.+|+..++.. + ..
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d 286 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRY 286 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhccc
Confidence 56899999999 7888888887654458999999999862 2346799999999886532 0 02
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
+.||+|++|.- - .. .-+...|..+.+.| ||||+++.++..
T Consensus 287 ~sFDlVisdgs----H------------~~-------~d~~~aL~el~rvL----KPGGvlVi~Dl~ 326 (419)
T 3sso_A 287 GPFDIVIDDGS----H------------IN-------AHVRTSFAALFPHV----RPGGLYVIEDMW 326 (419)
T ss_dssp CCEEEEEECSC----C------------CH-------HHHHHHHHHHGGGE----EEEEEEEEECGG
T ss_pred CCccEEEECCc----c------------cc-------hhHHHHHHHHHHhc----CCCeEEEEEecc
Confidence 78999998641 0 00 12344566666665 999999998654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=4.1e-07 Score=90.68 Aligned_cols=114 Identities=13% Similarity=0.097 Sum_probs=79.0
Q ss_pred CCeEeeccCCC--chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccC----CCCcC-
Q 010971 179 KERVIDMAAAP--GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG----LNTVD- 251 (496)
Q Consensus 179 g~~VLDmcAgp--GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~----~~~fD- 251 (496)
-.+|||+|||+ |+.+..+++...+...|+++|.|+.++..+++++...+..++.++..|++.+...+. ...||
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~ 158 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDL 158 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCT
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCc
Confidence 36899999997 666777887765668999999999999999998876555679999999988632211 13455
Q ss_pred ----EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 252 ----RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 252 ----~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.|++.+ ++- |--..+ ....+|....+.| +|||+|+.++.+-
T Consensus 159 ~~p~av~~~a------vLH------~l~d~~-------~p~~~l~~l~~~L----~PGG~Lvls~~~~ 203 (277)
T 3giw_A 159 TRPVALTVIA------IVH------FVLDED-------DAVGIVRRLLEPL----PSGSYLAMSIGTA 203 (277)
T ss_dssp TSCCEEEEES------CGG------GSCGGG-------CHHHHHHHHHTTS----CTTCEEEEEEECC
T ss_pred CCcchHHhhh------hHh------cCCchh-------hHHHHHHHHHHhC----CCCcEEEEEeccC
Confidence 455422 221 111100 0134677777765 9999999998664
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.6e-06 Score=86.48 Aligned_cols=112 Identities=13% Similarity=0.014 Sum_probs=77.8
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCc
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~f 250 (496)
..++..++.+|||+|||+|..+..++...++ ..++++|++ ..+. ++++...+.. ++.+..+|+.. + .+ .|
T Consensus 178 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~~-~--~p--~~ 248 (348)
T 3lst_A 178 RAGDFPATGTVADVGGGRGGFLLTVLREHPG-LQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFLR-E--VP--HA 248 (348)
T ss_dssp HHSCCCSSEEEEEETCTTSHHHHHHHHHCTT-EEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTTT-C--CC--CC
T ss_pred HhCCccCCceEEEECCccCHHHHHHHHHCCC-CEEEEecCH-HHhh--cccccccCCCCCeEEEecCCCC-C--CC--CC
Confidence 4456678899999999999999999998754 689999994 3333 3334444544 58999999852 1 22 79
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
|+|++-- + ...|...+ ...+|.++.+.| +|||+|+..+..+.
T Consensus 249 D~v~~~~------v-------lh~~~d~~-------~~~~L~~~~~~L----kpgG~l~i~e~~~~ 290 (348)
T 3lst_A 249 DVHVLKR------I-------LHNWGDED-------SVRILTNCRRVM----PAHGRVLVIDAVVP 290 (348)
T ss_dssp SEEEEES------C-------GGGSCHHH-------HHHHHHHHHHTC----CTTCEEEEEECCBC
T ss_pred cEEEEeh------h-------ccCCCHHH-------HHHHHHHHHHhc----CCCCEEEEEEeccC
Confidence 9998721 1 11233222 145788888876 99999998876544
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.6e-06 Score=85.41 Aligned_cols=131 Identities=17% Similarity=0.128 Sum_probs=87.8
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHc------CCC-----cEEEEEeCCH---HHHH-----------HHHHHHHHc----
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALM------KNT-----GLIYANEMKA---SRLK-----------SLTANLHRM---- 226 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~------~~~-----g~V~A~D~s~---~rl~-----------~l~~nl~r~---- 226 (496)
..++.+|||+|+|+|..++.+++.. .+. ..++++|..+ ..+. .+++++..+
T Consensus 58 ~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~ 137 (257)
T 2qy6_A 58 PHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPL 137 (257)
T ss_dssp SSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSC
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccc
Confidence 4466899999999999999887764 332 4899999876 5444 344555541
Q ss_pred ----------CCCeEEEEecCCCCC-ccccC--CCCcCEEEECC--CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHH
Q 010971 227 ----------GVTNTIVCNYDGNEL-PKVLG--LNTVDRVLLDA--PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLI 291 (496)
Q Consensus 227 ----------g~~nv~v~~~D~~~~-~~~~~--~~~fD~VLlDa--PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL 291 (496)
+..++.++.+|+... +.... ...||+|++|+ | .++|++ |+ .++|
T Consensus 138 ~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp-------~~~p~l---w~-----------~~~l 196 (257)
T 2qy6_A 138 PGCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAP-------AKNPDM---WT-----------QNLF 196 (257)
T ss_dssp SEEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCT-------TTCGGG---CC-----------HHHH
T ss_pred cchhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCc-------ccChhh---cC-----------HHHH
Confidence 224677889998774 43210 12799999997 4 346654 22 2456
Q ss_pred HHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEEeec
Q 010971 292 LAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 292 ~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~lv~~ 338 (496)
....+++ +|||+|+.-||. ..|...|...+|.+...
T Consensus 197 ~~l~~~L----~pGG~l~tysaa-------~~vrr~L~~aGF~v~~~ 232 (257)
T 2qy6_A 197 NAMARLA----RPGGTLATFTSA-------GFVRRGLQEAGFTMQKR 232 (257)
T ss_dssp HHHHHHE----EEEEEEEESCCB-------HHHHHHHHHHTEEEEEE
T ss_pred HHHHHHc----CCCcEEEEEeCC-------HHHHHHHHHCCCEEEeC
Confidence 6666765 999999843332 36777777778877654
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.8e-06 Score=85.88 Aligned_cols=108 Identities=15% Similarity=0.168 Sum_probs=74.7
Q ss_pred CCCeEeeccCCCch----HHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHH--------------H-----------
Q 010971 178 EKERVIDMAAAPGG----KTTYIAALMKN---TGLIYANEMKASRLKSLTANLH--------------R----------- 225 (496)
Q Consensus 178 ~g~~VLDmcAgpGg----KT~~lA~l~~~---~g~V~A~D~s~~rl~~l~~nl~--------------r----------- 225 (496)
++.+|||+|||+|- .++.|+..++. ...|+|+|+|+..|+.+++++- +
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 56666666542 2489999999999999998751 1
Q ss_pred -cCC-----CeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhh
Q 010971 226 -MGV-----TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVD 299 (496)
Q Consensus 226 -~g~-----~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~ 299 (496)
+.+ .+|.+...|....+-.. .+.||+|+|- .++ .-..+ ..|.+++....+.|
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~-~~~fDlI~cr------nvl-------iyf~~-------~~~~~vl~~~~~~L- 242 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNV-PGPFDAIFCR------NVM-------IYFDK-------TTQEDILRRFVPLL- 242 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCC-CCCEEEEEEC------SSG-------GGSCH-------HHHHHHHHHHGGGE-
T ss_pred ceeechhhcccCeEEecccCCCCCCc-CCCeeEEEEC------Cch-------HhCCH-------HHHHHHHHHHHHHh-
Confidence 111 25888999987743111 3689999981 111 11121 23677888888876
Q ss_pred hcCCCCcEEEE
Q 010971 300 ANSKSGGYIVY 310 (496)
Q Consensus 300 ~~lkpGG~LVY 310 (496)
+|||+|+.
T Consensus 243 ---~pgG~L~l 250 (274)
T 1af7_A 243 ---KPDGLLFA 250 (274)
T ss_dssp ---EEEEEEEE
T ss_pred ---CCCcEEEE
Confidence 99999986
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.32 E-value=8.9e-07 Score=88.88 Aligned_cols=98 Identities=17% Similarity=0.150 Sum_probs=65.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEE-EecCCCCCc-cccCCCCcCEEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIV-CNYDGNELP-KVLGLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v-~~~D~~~~~-~~~~~~~fD~VLl 255 (496)
+|.+|||+|||+|+.|..+++. +.+.|+|+|+++.+++...++- ..+.. ...|++.+. ..++...||.|++
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~--ga~~V~aVDvs~~mL~~a~r~~-----~rv~~~~~~ni~~l~~~~l~~~~fD~v~~ 157 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQN--GAKLVYAVDVGTNQLVWKLRQD-----DRVRSMEQYNFRYAEPVDFTEGLPSFASI 157 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSSSCSCHHHHTC-----TTEEEECSCCGGGCCGGGCTTCCCSEEEE
T ss_pred cccEEEecCCCccHHHHHHHhC--CCCEEEEEECCHHHHHHHHHhC-----cccceecccCceecchhhCCCCCCCEEEE
Confidence 5789999999999999988886 4579999999999887633221 12222 223333332 1122245999999
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
|...... ..+|..+.++| +|||+||..
T Consensus 158 d~sf~sl-------------------------~~vL~e~~rvL----kpGG~lv~l 184 (291)
T 3hp7_A 158 DVSFISL-------------------------NLILPALAKIL----VDGGQVVAL 184 (291)
T ss_dssp CCSSSCG-------------------------GGTHHHHHHHS----CTTCEEEEE
T ss_pred EeeHhhH-------------------------HHHHHHHHHHc----CcCCEEEEE
Confidence 8753211 23567777765 999999986
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.32 E-value=9.4e-07 Score=88.07 Aligned_cols=95 Identities=15% Similarity=0.164 Sum_probs=71.3
Q ss_pred EEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCC
Q 010971 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG 238 (496)
Q Consensus 160 ~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~ 238 (496)
|..+..-....+..+.+.++++|||+|||+|..|..|+..... .+.|+|+|+|+..+..++++. ..++.++++|+
T Consensus 24 fL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~ 99 (279)
T 3uzu_A 24 FLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----GELLELHAGDA 99 (279)
T ss_dssp EECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCG
T ss_pred ccCCHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----CCCcEEEECCh
Confidence 4433333334566778889999999999999999999987643 356999999999999999983 45799999999
Q ss_pred CCCcc--ccCCC--CcCEEEECCC
Q 010971 239 NELPK--VLGLN--TVDRVLLDAP 258 (496)
Q Consensus 239 ~~~~~--~~~~~--~fD~VLlDaP 258 (496)
..++- ..... ..+.|+.+.|
T Consensus 100 ~~~~~~~~~~~~~~~~~~vv~NlP 123 (279)
T 3uzu_A 100 LTFDFGSIARPGDEPSLRIIGNLP 123 (279)
T ss_dssp GGCCGGGGSCSSSSCCEEEEEECC
T ss_pred hcCChhHhcccccCCceEEEEccC
Confidence 87642 11101 3457889998
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.32 E-value=5.2e-07 Score=92.04 Aligned_cols=87 Identities=17% Similarity=0.183 Sum_probs=72.8
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCC---
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL--- 247 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~--- 247 (496)
+.+|.++||..+||+++|.||.|..|++.+++.|.|+|+|.++..++.++ + +.-.++.+++.+...+...+..
T Consensus 50 l~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-r---L~~~Rv~lv~~nF~~l~~~L~~~g~ 125 (347)
T 3tka_A 50 VNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-T---IDDPRFSIIHGPFSALGEYVAERDL 125 (347)
T ss_dssp HHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-T---CCCTTEEEEESCGGGHHHHHHHTTC
T ss_pred HHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-h---hcCCcEEEEeCCHHHHHHHHHhcCC
Confidence 56678999999999999999999999999888899999999999998773 3 3335689999998887554421
Q ss_pred -CCcCEEEECCCCCC
Q 010971 248 -NTVDRVLLDAPCSG 261 (496)
Q Consensus 248 -~~fD~VLlDaPCSg 261 (496)
+.+|.||+|-.||.
T Consensus 126 ~~~vDgILfDLGVSS 140 (347)
T 3tka_A 126 IGKIDGILLDLGVSS 140 (347)
T ss_dssp TTCEEEEEEECSCCH
T ss_pred CCcccEEEECCccCH
Confidence 26999999999995
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.29 E-value=7.4e-07 Score=87.22 Aligned_cols=94 Identities=16% Similarity=0.157 Sum_probs=70.8
Q ss_pred EEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCC
Q 010971 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (496)
Q Consensus 160 ~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~ 239 (496)
|..+..-....+..+.+.++++|||+|||+|..|..++.. +.+.|+|+|+|+..+..++++ +..++.++++|+.
T Consensus 13 fl~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~--~~~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~ 86 (249)
T 3ftd_A 13 LLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH--PLKKLYVIELDREMVENLKSI----GDERLEVINEDAS 86 (249)
T ss_dssp CEECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS--CCSEEEEECCCHHHHHHHTTS----CCTTEEEECSCTT
T ss_pred ccCCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc--CCCeEEEEECCHHHHHHHHhc----cCCCeEEEEcchh
Confidence 4443333344566778889999999999999999988875 247999999999999999887 3457999999998
Q ss_pred CCccccCCCCcCEEEECCCCC
Q 010971 240 ELPKVLGLNTVDRVLLDAPCS 260 (496)
Q Consensus 240 ~~~~~~~~~~fD~VLlDaPCS 260 (496)
.++-..... ...|+.++|+.
T Consensus 87 ~~~~~~~~~-~~~vv~NlPy~ 106 (249)
T 3ftd_A 87 KFPFCSLGK-ELKVVGNLPYN 106 (249)
T ss_dssp TCCGGGSCS-SEEEEEECCTT
T ss_pred hCChhHccC-CcEEEEECchh
Confidence 875221112 33899999963
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=6.7e-07 Score=88.81 Aligned_cols=94 Identities=15% Similarity=0.040 Sum_probs=73.4
Q ss_pred EEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCC
Q 010971 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (496)
Q Consensus 160 ~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~ 239 (496)
|..+..-....+..+++.++ +|||+|||+|..|..|+... +.|+|+|+|+..+..+++++.. .++.++++|+.
T Consensus 29 fL~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~~---~~v~vi~~D~l 101 (271)
T 3fut_A 29 FLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLSG---LPVRLVFQDAL 101 (271)
T ss_dssp EECCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTTT---SSEEEEESCGG
T ss_pred ccCCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcCC---CCEEEEECChh
Confidence 43333333445667788889 99999999999999999863 6899999999999999988762 57999999998
Q ss_pred CCccccCCCCcCEEEECCCCCC
Q 010971 240 ELPKVLGLNTVDRVLLDAPCSG 261 (496)
Q Consensus 240 ~~~~~~~~~~fD~VLlDaPCSg 261 (496)
.++... ...||.|+.+.|+.-
T Consensus 102 ~~~~~~-~~~~~~iv~NlPy~i 122 (271)
T 3fut_A 102 LYPWEE-VPQGSLLVANLPYHI 122 (271)
T ss_dssp GSCGGG-SCTTEEEEEEECSSC
T ss_pred hCChhh-ccCccEEEecCcccc
Confidence 775321 136899999999653
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=3.6e-06 Score=82.39 Aligned_cols=107 Identities=15% Similarity=0.066 Sum_probs=75.4
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.+..+|||+|||.|-.++.+. +...++|+|+|+..++.+++++.++|. +..+...|...-+ . .+.||+||+-
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g~-~~~~~v~D~~~~~--~-~~~~DvvLll 175 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKDW-DFTFALQDVLCAP--P-AEAGDLALIF 175 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTTC-EEEEEECCTTTSC--C-CCBCSEEEEE
T ss_pred CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcCC-CceEEEeecccCC--C-CCCcchHHHH
Confidence 356799999999999887655 558999999999999999999999994 6677778876544 2 3689999761
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE-eCCCC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS-TCSIM 316 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS-TCSi~ 316 (496)
++ +..|-+.|+..+...++.| +++|.+|-. |-|+.
T Consensus 176 ------------------k~---lh~LE~q~~~~~~~ll~aL----~~~~vvVsfPtksl~ 211 (253)
T 3frh_A 176 ------------------KL---LPLLEREQAGSAMALLQSL----NTPRMAVSFPTRSLG 211 (253)
T ss_dssp ------------------SC---HHHHHHHSTTHHHHHHHHC----BCSEEEEEEECC---
T ss_pred ------------------HH---HHHhhhhchhhHHHHHHHh----cCCCEEEEcChHHhc
Confidence 22 2233344444555667765 887766532 34553
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-05 Score=82.49 Aligned_cols=116 Identities=14% Similarity=0.044 Sum_probs=87.0
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
.++..+..+|||+|||+|..+..|++..++ ..++..|. +..++.+++++...+..+|.++.+|+...+ . ..+|+
T Consensus 174 ~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~-~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~--~--~~~D~ 247 (353)
T 4a6d_A 174 AFDLSVFPLMCDLGGGAGALAKECMSLYPG-CKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDP--L--PEADL 247 (353)
T ss_dssp SSCGGGCSEEEEETCTTSHHHHHHHHHCSS-CEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSC--C--CCCSE
T ss_pred hcCcccCCeEEeeCCCCCHHHHHHHHhCCC-ceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCC--C--CCceE
Confidence 345667889999999999999999999875 57888887 788888888887667778999999986543 2 46899
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCc
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT 318 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~e 318 (496)
|++ -.+...|+.++. .+||.++.+.+ +|||+|+....-+.+.
T Consensus 248 ~~~-------------~~vlh~~~d~~~-------~~iL~~~~~al----~pgg~lli~e~~~~~~ 289 (353)
T 4a6d_A 248 YIL-------------ARVLHDWADGKC-------SHLLERIYHTC----KPGGGILVIESLLDED 289 (353)
T ss_dssp EEE-------------ESSGGGSCHHHH-------HHHHHHHHHHC----CTTCEEEEEECCCCTT
T ss_pred EEe-------------eeecccCCHHHH-------HHHHHHHHhhC----CCCCEEEEEEeeeCCC
Confidence 987 112334554443 45788888886 9999999888766544
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=1e-06 Score=91.38 Aligned_cols=107 Identities=6% Similarity=0.023 Sum_probs=72.7
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEE--EEecCCCCCccccCCCCc
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI--VCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~--v~~~D~~~~~~~~~~~~f 250 (496)
.+.+.++.+|||+|||+|..+..++.. ...|+++|+|+..++.++++ |+..+. +...|+..++ +..+.|
T Consensus 102 ~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~--~~~~~f 172 (416)
T 4e2x_A 102 TELTGPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVR--RTEGPA 172 (416)
T ss_dssp TTTCSSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHH--HHHCCE
T ss_pred HhCCCCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcc--cCCCCE
Confidence 345678999999999999999988875 25899999999999887765 554432 1122222232 123789
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
|+|++. +++..-++ ...+|..+.++| +|||+|+.++-.
T Consensus 173 D~I~~~------~vl~h~~d----------------~~~~l~~~~r~L----kpgG~l~i~~~~ 210 (416)
T 4e2x_A 173 NVIYAA------NTLCHIPY----------------VQSVLEGVDALL----APDGVFVFEDPY 210 (416)
T ss_dssp EEEEEE------SCGGGCTT----------------HHHHHHHHHHHE----EEEEEEEEEEEC
T ss_pred EEEEEC------ChHHhcCC----------------HHHHHHHHHHHc----CCCeEEEEEeCC
Confidence 999973 22222211 234677777776 999999987543
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.3e-06 Score=82.78 Aligned_cols=100 Identities=12% Similarity=0.167 Sum_probs=65.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc-cccCCCCcCEEEEC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP-KVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~-~~~~~~~fD~VLlD 256 (496)
+|.+|||+|||+|+.|..+++. +...|+|+|+++.+++.+.++..+.++ .-..+.+.+. ..+....||.+.+|
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~--g~~~V~gvDis~~ml~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~~~D 110 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQN--GAKLVYALDVGTNQLAWKIRSDERVVV----MEQFNFRNAVLADFEQGRPSFTSID 110 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSCCCCCHHHHTCTTEEE----ECSCCGGGCCGGGCCSCCCSEEEEC
T ss_pred CCCEEEEEccCCCHHHHHHHhc--CCCEEEEEcCCHHHHHHHHHhCccccc----cccceEEEeCHhHcCcCCCCEEEEE
Confidence 5779999999999999999886 335999999999998876554433211 1111111111 11211237888888
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
...+.. ..+|..+.++| +|||+|+..+
T Consensus 111 ~v~~~l-------------------------~~~l~~i~rvL----kpgG~lv~~~ 137 (232)
T 3opn_A 111 VSFISL-------------------------DLILPPLYEIL----EKNGEVAALI 137 (232)
T ss_dssp CSSSCG-------------------------GGTHHHHHHHS----CTTCEEEEEE
T ss_pred EEhhhH-------------------------HHHHHHHHHhc----cCCCEEEEEE
Confidence 765431 23577777775 9999999853
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-06 Score=87.22 Aligned_cols=127 Identities=16% Similarity=0.133 Sum_probs=72.1
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
++++.+|||+||||||++..++..++ .+.++++|+..+. ..-.......|. +++....++.... +....||+|++
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~-~~~v~g~dVGvDl-~~~pi~~~~~g~-~ii~~~~~~dv~~--l~~~~~DlVls 146 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKE-VSGVKGFTLGRDG-HEKPMNVQSLGW-NIITFKDKTDIHR--LEPVKCDTLLC 146 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTT-CCCCCCCCBTTG-GGEEEECSCCTTT--SCCCCCSEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcC-CCcceeEEEeccC-cccccccCcCCC-CeEEEeccceehh--cCCCCccEEEe
Confidence 46788999999999999988776543 3567788876321 000000011122 4444555442221 23468999999
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC-cEEEEEeCCCCCcCCHHHHHHH
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG-GYIVYSTCSIMVTENEAVIDYA 327 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpG-G~LVYSTCSi~~eENE~vV~~~ 327 (496)
|.--+ +|.. ..+.. .+..||.-|.+.| +|| |.+|.....-+-.+-.+.+..+
T Consensus 147 D~apn-sG~~----------~~D~~-----rs~~LL~~a~~~L----kpG~G~FV~KVf~pyg~~~~~l~~~l 199 (277)
T 3evf_A 147 DIGES-SSSS----------VTEGE-----RTVRVLDTVEKWL----ACGVDNFCVKVLAPYMPDVLEKLELL 199 (277)
T ss_dssp CCCCC-CSCH----------HHHHH-----HHHHHHHHHHHHH----TTCCSEEEEEESCTTSHHHHHHHHHH
T ss_pred cCccC-cCch----------HHHHH-----HHHHHHHHHHHHh----CCCCCeEEEEecCCCCccHHHHHHHH
Confidence 95433 5531 11111 2233477777776 999 9999855443233333444443
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=2.2e-06 Score=84.84 Aligned_cols=109 Identities=20% Similarity=0.096 Sum_probs=77.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
+..+|||+|||.|-.++.++... +...++|+|+|+..++.+++|+.++|+. ..+...|...-+ ..+.||+||+-
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~-p~a~y~a~DId~~~le~a~~~l~~~g~~-~~~~v~D~~~~~---p~~~~DvaL~l- 205 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLP-AETVYIASDIDARLVGFVDEALTRLNVP-HRTNVADLLEDR---LDEPADVTLLL- 205 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCC-TTCEEEEEESBHHHHHHHHHHHHHTTCC-EEEEECCTTTSC---CCSCCSEEEET-
T ss_pred CCceeeeeccCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEeeecccC---CCCCcchHHHH-
Confidence 35699999999999998877754 4579999999999999999999999997 566677765432 23789999872
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE-EeCCCC
Q 010971 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY-STCSIM 316 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVY-STCSi~ 316 (496)
++ +..|-..|+..+-..++.| +|||.+|- =|-|+.
T Consensus 206 -----------------kt---i~~Le~q~kg~g~~ll~aL----~~~~vvVSfp~ksl~ 241 (281)
T 3lcv_B 206 -----------------KT---LPCLETQQRGSGWEVIDIV----NSPNIVVTFPTKSLG 241 (281)
T ss_dssp -----------------TC---HHHHHHHSTTHHHHHHHHS----SCSEEEEEEECC---
T ss_pred -----------------HH---HHHhhhhhhHHHHHHHHHh----CCCCEEEeccchhhc
Confidence 22 2223333333344677776 89888763 344443
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=2.7e-06 Score=85.14 Aligned_cols=128 Identities=10% Similarity=0.048 Sum_probs=73.2
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEe-cCCCCCccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCN-YDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~-~D~~~~~~~~~~~~fD~VLl 255 (496)
.+|.+|||+||||||+|..+++.++ ...|+++|+......... ....++...+.+.. .|...+ ....||+|++
T Consensus 80 ~~g~~vlDLGaaPGgWsqva~~~~g-v~sV~Gvdlg~~~~~~P~-~~~~~~~~iv~~~~~~di~~l----~~~~~DlVls 153 (300)
T 3eld_A 80 RITGRVLDLGCGRGGWSYYAAAQKE-VMSVKGYTLGIEGHEKPI-HMQTLGWNIVKFKDKSNVFTM----PTEPSDTLLC 153 (300)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCC-CCCBTTGGGEEEECSCCTTTS----CCCCCSEEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHhcC-CceeeeEEeccccccccc-cccccCCceEEeecCceeeec----CCCCcCEEee
Confidence 5799999999999999999887653 357889998642100000 00011222222221 133332 2368999999
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC-cEEEEEeCCCCCcCCHHHHHHHHHh
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG-GYIVYSTCSIMVTENEAVIDYALKK 330 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpG-G~LVYSTCSi~~eENE~vV~~~L~~ 330 (496)
|.-.+ +|.. .+... .|..||.-|.+.| +|| |.+|.-....+-.+-.+.+..+-..
T Consensus 154 D~APn-sG~~-------------~~D~~--rs~~LL~~A~~~L----kpG~G~FV~KvF~~yG~~~~~ll~~lk~~ 209 (300)
T 3eld_A 154 DIGES-SSNP-------------LVERD--RTMKVLENFERWK----HVNTENFCVKVLAPYHPDVIEKLERLQLR 209 (300)
T ss_dssp CCCCC-CSSH-------------HHHHH--HHHHHHHHHHHHC----CTTCCEEEEEESSTTSHHHHHHHHHHHHH
T ss_pred cCcCC-CCCH-------------HHHHH--HHHHHHHHHHHHh----cCCCCcEEEEeccccCccHHHHHHHHHHh
Confidence 97767 7742 11111 2344477777765 999 9998754443334444444443333
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=98.11 E-value=4.5e-06 Score=83.35 Aligned_cols=106 Identities=19% Similarity=0.184 Sum_probs=67.9
Q ss_pred cCCCCCCeEeeccC------CCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCC
Q 010971 174 LAPQEKERVIDMAA------APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 174 L~~~~g~~VLDmcA------gpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~ 247 (496)
|.+.-|++|||+|| |||+ ..+.++.+..+.|+++|+.+--. ..+ .++.+|...+.. .
T Consensus 105 ~~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~s-----------da~-~~IqGD~~~~~~---~ 167 (344)
T 3r24_A 105 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVS-----------DAD-STLIGDCATVHT---A 167 (344)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBC-----------SSS-EEEESCGGGEEE---S
T ss_pred EeecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccccc-----------CCC-eEEEcccccccc---C
Confidence 34567999999997 9999 34555544335999999986210 112 447899765432 3
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
..||+||.|.-..-+|... .+.++. . .|.+.|+++....|+|||.+|.=
T Consensus 168 ~k~DLVISDMAPNtTG~~D-~d~~Rs----~----------~L~ElALdfA~~~LkpGGsFvVK 216 (344)
T 3r24_A 168 NKWDLIISDMYDPRTKHVT-KENDSK----E----------GFFTYLCGFIKQKLALGGSIAVK 216 (344)
T ss_dssp SCEEEEEECCCCTTSCSSC-SCCCCC----C----------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCEEEecCCCCcCCccc-cchhHH----H----------HHHHHHHHHHHHhCcCCCEEEEE
Confidence 7899999997777777622 111111 1 13444444444556999999863
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.1e-06 Score=87.38 Aligned_cols=112 Identities=17% Similarity=0.179 Sum_probs=65.5
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
++++.+|||+||||||++.+++..++ ...|+++|+.......... +..+|. +++....+.... .+....||+||+
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~g-v~sV~GvdvG~d~~~~pi~-~~~~g~-~ii~~~~~~dv~--~l~~~~~DvVLS 162 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLKN-VKKVMAFTLGVQGHEKPIM-RTTLGW-NLIRFKDKTDVF--NMEVIPGDTLLC 162 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCGG--GSCCCCCSEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcC-CCeeeeEEeccCccccccc-cccCCC-ceEEeeCCcchh--hcCCCCcCEEEe
Confidence 46788999999999999998877653 4578899987541100000 011232 333333222111 123478999999
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC--cEEEEEe
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG--GYIVYST 312 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpG--G~LVYST 312 (496)
|.--+ +|.. ..+.. .+..||.-|.+.| +|| |.+|.-.
T Consensus 163 DmApn-sG~~----------~~D~~-----rs~~LL~~A~~~L----k~g~~G~Fv~Kv 201 (282)
T 3gcz_A 163 DIGES-SPSI----------AVEEQ-----RTLRVLNCAKQWL----QEGNYTEFCIKV 201 (282)
T ss_dssp CCCCC-CSCH----------HHHHH-----HHHHHHHHHHHHH----HHHCCCEEEEEE
T ss_pred cCccC-CCCh----------HHHHH-----HHHHHHHHHHHHc----CCCCCCcEEEEE
Confidence 95434 5531 11111 2233477777776 899 9998643
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.08 E-value=1.7e-06 Score=84.95 Aligned_cols=87 Identities=13% Similarity=0.114 Sum_probs=65.9
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc--ccC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK--VLG 246 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~--~~~ 246 (496)
..+..+.+.+|++|||+|||+|..|. ++. . ..+.|+|+|+|+..+..+++++... .++.++++|+..++- .+.
T Consensus 12 ~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 12 SIVSAINPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHCCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHHHHH
T ss_pred HHHHhcCCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCHHHhhc
Confidence 34566778899999999999999999 643 2 2223999999999999999887653 589999999987642 110
Q ss_pred -CCCcCEEEECCCCC
Q 010971 247 -LNTVDRVLLDAPCS 260 (496)
Q Consensus 247 -~~~fD~VLlDaPCS 260 (496)
.+..|.|+.++|+.
T Consensus 87 ~~~~~~~vvsNlPY~ 101 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYN 101 (252)
T ss_dssp HHTSCEEEEEECCTT
T ss_pred ccCCceEEEECCCCC
Confidence 02457999999964
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=5.7e-06 Score=90.02 Aligned_cols=75 Identities=13% Similarity=0.004 Sum_probs=64.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
.+.+|||+|||.|..|..||.+ ...|+++|+++..++.++..+...|..++.+.+.|+..+......+.||+|++
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~ 140 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIG 140 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEE
T ss_pred CCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEE
Confidence 4679999999999999999986 36899999999999999999999887789999999887744344478999997
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=2.4e-05 Score=80.32 Aligned_cols=105 Identities=10% Similarity=0.085 Sum_probs=75.6
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
..++.+|||+|||+|..+..++...++ ..++++|+ +..++.++. ..++.++.+|+.. + ++ .. |+|++
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~p-~~-D~v~~ 267 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPS-INAINFDL-PHVIQDAPA------FSGVEHLGGDMFD-G--VP-KG-DAIFI 267 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-C--CC-CC-SEEEE
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCC-CEEEEEeh-HHHHHhhhh------cCCCEEEecCCCC-C--CC-CC-CEEEE
Confidence 456789999999999999999998754 68999999 776655432 2578999999875 2 22 23 99987
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
-- +...|+..+. .++|.++.+.| +|||+|+.....+..
T Consensus 268 ~~-------------vlh~~~~~~~-------~~~l~~~~~~L----~pgG~l~i~e~~~~~ 305 (368)
T 3reo_A 268 KW-------------ICHDWSDEHC-------LKLLKNCYAAL----PDHGKVIVAEYILPP 305 (368)
T ss_dssp ES-------------CGGGBCHHHH-------HHHHHHHHHHS----CTTCEEEEEECCCCS
T ss_pred ec-------------hhhcCCHHHH-------HHHHHHHHHHc----CCCCEEEEEEeccCC
Confidence 22 1122333322 45788888876 999999998877643
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=4e-05 Score=77.74 Aligned_cols=104 Identities=14% Similarity=0.150 Sum_probs=75.1
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
..++.+|||+|||+|..+..+++..++ ..++++|+ +..++.+++ ..++.+..+|+.. + + ..||+|++
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~--p~~D~v~~ 252 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPK-LKCIVFDR-PQVVENLSG------SNNLTYVGGDMFT-S--I--PNADAVLL 252 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCC------BTTEEEEECCTTT-C--C--CCCSEEEE
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCC-CeEEEeeC-HHHHhhccc------CCCcEEEeccccC-C--C--CCccEEEe
Confidence 356789999999999999999988754 68999999 887765543 2458899999865 2 2 23999997
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCC---CcEEEEEeCCCC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS---GGYIVYSTCSIM 316 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkp---GG~LVYSTCSi~ 316 (496)
-- ++ ..|...+ ..++|.++.+.| +| ||+|+.+...+.
T Consensus 253 ~~------~l-------h~~~d~~-------~~~~l~~~~~~L----~p~~~gG~l~i~e~~~~ 292 (352)
T 1fp2_A 253 KY------IL-------HNWTDKD-------CLRILKKCKEAV----TNDGKRGKVTIIDMVID 292 (352)
T ss_dssp ES------CG-------GGSCHHH-------HHHHHHHHHHHH----SGGGCCCEEEEEECEEC
T ss_pred eh------hh-------ccCCHHH-------HHHHHHHHHHhC----CCCCCCcEEEEEEeecC
Confidence 21 11 1232222 235788888887 99 999998876654
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.01 E-value=8.9e-06 Score=81.25 Aligned_cols=125 Identities=10% Similarity=0.147 Sum_probs=89.0
Q ss_pred CCeEeeccCCCchHHHHHHHHcC----CCcEEEEEeCCH--------------------------HHHHHHHHHHHHcCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMK----NTGLIYANEMKA--------------------------SRLKSLTANLHRMGV 228 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~----~~g~V~A~D~s~--------------------------~rl~~l~~nl~r~g~ 228 (496)
...||++|++.|+.+++|+..+. ..+.|+++|... .+++.+++|+++.|+
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl 186 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL 186 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence 45999999999999999998875 257899999631 157789999999998
Q ss_pred --CeEEEEecCCCCC-ccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 010971 229 --TNTIVCNYDGNEL-PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305 (496)
Q Consensus 229 --~nv~v~~~D~~~~-~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpG 305 (496)
.+|.++.+|+.+. +. +....||.|++|+- . ..-....|..++..| +||
T Consensus 187 ~~~~I~li~Gda~etL~~-~~~~~~d~vfIDaD---~---------------------y~~~~~~Le~~~p~L----~pG 237 (282)
T 2wk1_A 187 LDEQVRFLPGWFKDTLPT-APIDTLAVLRMDGD---L---------------------YESTWDTLTNLYPKV----SVG 237 (282)
T ss_dssp CSTTEEEEESCHHHHSTT-CCCCCEEEEEECCC---S---------------------HHHHHHHHHHHGGGE----EEE
T ss_pred CcCceEEEEeCHHHHHhh-CCCCCEEEEEEcCC---c---------------------cccHHHHHHHHHhhc----CCC
Confidence 5799999998653 33 33468999999973 0 001123455666665 999
Q ss_pred cEEEEEeCCCCCcCCHHHHHHHHHhCCc
Q 010971 306 GYIVYSTCSIMVTENEAVIDYALKKRDV 333 (496)
Q Consensus 306 G~LVYSTCSi~~eENE~vV~~~L~~~~~ 333 (496)
|+||.-...+.+.+ ..-|..|++.+++
T Consensus 238 GiIv~DD~~~~~G~-~~Av~Ef~~~~~i 264 (282)
T 2wk1_A 238 GYVIVDDYMMCPPC-KDAVDEYRAKFDI 264 (282)
T ss_dssp EEEEESSCTTCHHH-HHHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHH-HHHHHHHHHhcCC
Confidence 99998776443433 3444555666653
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=3.1e-06 Score=87.48 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=55.8
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
+.+|++|||+||+|||+|..+++. .+.|+|+|+.+ +...+ +...+|.++..|+..+.. ....||.|++
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~-----l~~~l--~~~~~V~~~~~d~~~~~~--~~~~~D~vvs 276 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGP-----MAQSL--MDTGQVTWLREDGFKFRP--TRSNISWMVC 276 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSC-----CCHHH--HTTTCEEEECSCTTTCCC--CSSCEEEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhh-----cChhh--ccCCCeEEEeCccccccC--CCCCcCEEEE
Confidence 568999999999999999988875 47999999753 11122 234679999999987643 2368999999
Q ss_pred CCCCC
Q 010971 256 DAPCS 260 (496)
Q Consensus 256 DaPCS 260 (496)
|.-|.
T Consensus 277 Dm~~~ 281 (375)
T 4auk_A 277 DMVEK 281 (375)
T ss_dssp CCSSC
T ss_pred cCCCC
Confidence 98643
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=3.1e-05 Score=79.35 Aligned_cols=105 Identities=14% Similarity=0.131 Sum_probs=76.0
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
..++.+|||+|||+|..+..|+...++ ..++++|+ +..+..++. ..++.++.+|+.. + ++ .. |+|++
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~--~p-~~-D~v~~ 265 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPT-IKGVNFDL-PHVISEAPQ------FPGVTHVGGDMFK-E--VP-SG-DTILM 265 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-C--CC-CC-SEEEE
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCC-CeEEEecC-HHHHHhhhh------cCCeEEEeCCcCC-C--CC-CC-CEEEe
Confidence 567899999999999999999998764 68999999 766654432 2578999999875 3 22 23 99987
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
-- +...|+..+. .++|.++.+.| +|||+|+.....+..
T Consensus 266 ~~-------------vlh~~~d~~~-------~~~L~~~~~~L----~pgG~l~i~e~~~~~ 303 (364)
T 3p9c_A 266 KW-------------ILHDWSDQHC-------ATLLKNCYDAL----PAHGKVVLVQCILPV 303 (364)
T ss_dssp ES-------------CGGGSCHHHH-------HHHHHHHHHHS----CTTCEEEEEECCBCS
T ss_pred hH-------------HhccCCHHHH-------HHHHHHHHHHc----CCCCEEEEEEeccCC
Confidence 21 1223443332 45788888876 999999998876543
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=3.5e-05 Score=78.83 Aligned_cols=103 Identities=10% Similarity=0.065 Sum_probs=74.5
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
..++.+|||+|||+|..+..++...++ ..++++|+ +..+..+++ ..++.++.+|+.. + ++ .||+|++
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~~--~~D~v~~ 273 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPL-IKGINFDL-PQVIENAPP------LSGIEHVGGDMFA-S--VP--QGDAMIL 273 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-C--CC--CEEEEEE
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCC-CeEEEeCh-HHHHHhhhh------cCCCEEEeCCccc-C--CC--CCCEEEE
Confidence 567889999999999999999998754 68999999 877765543 2568899999876 3 32 3999997
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
- .++ ..+...+ ...+|.++.+.| +|||+|+.+...+
T Consensus 274 ~------~~l-------h~~~d~~-------~~~~l~~~~~~L----~pgG~l~i~e~~~ 309 (372)
T 1fp1_D 274 K------AVC-------HNWSDEK-------CIEFLSNCHKAL----SPNGKVIIVEFIL 309 (372)
T ss_dssp E------SSG-------GGSCHHH-------HHHHHHHHHHHE----EEEEEEEEEEEEE
T ss_pred e------ccc-------ccCCHHH-------HHHHHHHHHHhc----CCCCEEEEEEecc
Confidence 2 111 1222222 135788888876 9999999886554
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=4.5e-05 Score=74.10 Aligned_cols=80 Identities=23% Similarity=0.219 Sum_probs=55.5
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec-CCCCCccccCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY-DGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~-D~~~~~~~~~~~~fD~VL 254 (496)
+.++.+|||+||||||++.+++.+.+ ...|+|+|+-..--. --..++.+|...|.+... |...++. ..+|.||
T Consensus 76 l~~g~~VvDLGaapGGWSq~~a~~~g-~~~V~avdvG~~ghe-~P~~~~s~gwn~v~fk~gvDv~~~~~----~~~Dtll 149 (267)
T 3p8z_A 76 VIPEGRVIDLGCGRGGWSYYCAGLKK-VTEVRGYTKGGPGHE-EPVPMSTYGWNIVKLMSGKDVFYLPP----EKCDTLL 149 (267)
T ss_dssp SCCCEEEEEESCTTSHHHHHHHTSTT-EEEEEEECCCSTTSC-CCCCCCCTTTTSEEEECSCCGGGCCC----CCCSEEE
T ss_pred CCCCCEEEEcCCCCCcHHHHHHHhcC-CCEEEEEecCCCCcc-CcchhhhcCcCceEEEeccceeecCC----ccccEEE
Confidence 46899999999999999988777653 358999998643110 000123456667888887 8644432 5699999
Q ss_pred EC-CCCCC
Q 010971 255 LD-APCSG 261 (496)
Q Consensus 255 lD-aPCSg 261 (496)
|| +|.|+
T Consensus 150 cDIgeSs~ 157 (267)
T 3p8z_A 150 CDIGESSP 157 (267)
T ss_dssp ECCCCCCS
T ss_pred EecCCCCC
Confidence 99 66444
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=7.7e-05 Score=75.82 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=73.8
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.++.+|||+|||+|..+..++...++ ..++++|+ +..++.++. ..++.++.+|+.. + + ..||+|++-
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~--~~~D~v~~~ 258 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPH-LKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFK-S--I--PSADAVLLK 258 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTT-SEEEEEEC-HHHHSSCCC------CSSEEEEECCTTT-C--C--CCCSEEEEE
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCC-CeEEEecc-HHHHhhccc------CCCcEEEeCccCC-C--C--CCceEEEEc
Confidence 46789999999999999999998754 68999999 666654432 3568899999876 3 3 259999973
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCC---CcEEEEEeCCCC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS---GGYIVYSTCSIM 316 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkp---GG~LVYSTCSi~ 316 (496)
-. ...+...+ ..++|.++.+.| +| ||+|+.....+.
T Consensus 259 ~v-------------lh~~~d~~-------~~~~l~~~~~~L----~p~~~gG~l~i~e~~~~ 297 (358)
T 1zg3_A 259 WV-------------LHDWNDEQ-------SLKILKNSKEAI----SHKGKDGKVIIIDISID 297 (358)
T ss_dssp SC-------------GGGSCHHH-------HHHHHHHHHHHT----GGGGGGCEEEEEECEEC
T ss_pred cc-------------ccCCCHHH-------HHHHHHHHHHhC----CCCCCCcEEEEEEeccC
Confidence 21 11232222 135788888876 99 999998876653
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.80 E-value=2.3e-05 Score=78.19 Aligned_cols=159 Identities=16% Similarity=0.103 Sum_probs=99.2
Q ss_pred ccEEEecCCCCCCCCcccccccEEEeC-----CcchhH-HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeC
Q 010971 138 VGLVVYDSQVPIGATPEYMAGFYMLQS-----ASSFLP-VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211 (496)
Q Consensus 138 ~gl~v~~~~~~i~~~~~~~~G~~~iQd-----~sS~l~-v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~ 211 (496)
.|++-.++ .....|.||..|..-+-. +...-+ ...+..-.+..+||+++|+|..++.+.. +...++.+|.
T Consensus 46 ~G~Y~L~~-~~a~ktgE~~~GI~rl~~~~~~~p~~l~~yf~~l~~~n~~~~LDlfaGSGaLgiEaLS---~~d~~vfvE~ 121 (283)
T 2oo3_A 46 RGIYDLKD-KQSLKTEEYKEGINPVWLDRENLPSLFLEYISVIKQINLNSTLSYYPGSPYFAINQLR---SQDRLYLCEL 121 (283)
T ss_dssp TSEEETTC-C----CCGGGGTHHHHHHTGGGSCGGGHHHHHHHHHHSSSSSCCEEECHHHHHHHHSC---TTSEEEEECC
T ss_pred cCccCCCC-hHHhhcHHHHHHHHHHHhcccCCcHHHHHHHHHHHHhcCCCceeEeCCcHHHHHHHcC---CCCeEEEEeC
Confidence 45543332 233568899998655532 111001 1111122467799999999999875444 4479999999
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc-c-CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHH
Q 010971 212 KASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-L-GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQ 289 (496)
Q Consensus 212 s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~-~-~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~ 289 (496)
++..++.+++|+.. ..++.+.+.|+...... . +...||+||+|||+---+ +.... .+
T Consensus 122 ~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~---------------~~~~v----l~ 180 (283)
T 2oo3_A 122 HPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKE---------------EYKEI----PY 180 (283)
T ss_dssp SHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTT---------------HHHHH----HH
T ss_pred CHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCc---------------HHHHH----HH
Confidence 99999999999976 45689999997553221 1 124699999999953111 11111 22
Q ss_pred HHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHh
Q 010971 290 LILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330 (496)
Q Consensus 290 LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~ 330 (496)
.|..+... -|+|+++. |.|--+...++.+++.
T Consensus 181 ~L~~~~~r-----~~~Gi~v~----WYPi~~~~~~~~~~~~ 212 (283)
T 2oo3_A 181 AIKNAYSK-----FSTGLYCV----WYPVVNKAWTEQFLRK 212 (283)
T ss_dssp HHHHHHHH-----CTTSEEEE----EEEESSHHHHHHHHHH
T ss_pred HHHHhCcc-----CCCeEEEE----EEeccchHHHHHHHHH
Confidence 34444444 68888876 7777777777777664
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00025 Score=73.40 Aligned_cols=81 Identities=21% Similarity=0.277 Sum_probs=60.7
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc-c-----CCCCcCEE
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-L-----GLNTVDRV 253 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~-~-----~~~~fD~V 253 (496)
.+|||+|||.||.++-+.+. +--.|+|+|+++..++..+.|. .+..+++.|...+... + ....+|+|
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~-----~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i 75 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINF-----PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGI 75 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHC-----TTSEEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhC-----CCCceEecChhhcCHHHHHhhcccCCCeeEE
Confidence 58999999999999887765 3346889999999999998885 3456677888776321 1 23679999
Q ss_pred EECCCCCCCCcccC
Q 010971 254 LLDAPCSGTGVISK 267 (496)
Q Consensus 254 LlDaPCSg~G~i~r 267 (496)
+.+|||.+..+..+
T Consensus 76 ~ggpPCQ~fS~ag~ 89 (376)
T 3g7u_A 76 IGGPPCQGFSSIGK 89 (376)
T ss_dssp EECCCCCTTC----
T ss_pred EecCCCCCcccccC
Confidence 99999988876654
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=97.68 E-value=3e-05 Score=70.21 Aligned_cols=114 Identities=11% Similarity=0.059 Sum_probs=73.7
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc-cCCCCcCE
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-LGLNTVDR 252 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~-~~~~~fD~ 252 (496)
+.+.+|++|||++||. +++|+++.+++.+++++.. ++.+...|+..++.. +..+.||.
T Consensus 8 ~g~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~----~~~~~~~d~~~~~~~~~~~~~fD~ 66 (176)
T 2ld4_A 8 FGISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGN----EGRVSVENIKQLLQSAHKESSFDI 66 (176)
T ss_dssp TTCCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTT----TSEEEEEEGGGGGGGCCCSSCEEE
T ss_pred cCCCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhccc----CcEEEEechhcCccccCCCCCEeE
Confidence 4578899999999885 2389999999998877532 367788888876531 13478999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCc------CCHHHHHH
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT------ENEAVIDY 326 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~e------ENE~vV~~ 326 (496)
|++-- ....+. ++ ...+|.++.+.| ||||+|+.++-..... -..+.+..
T Consensus 67 V~~~~---~l~~~~--~~----------------~~~~l~~~~r~L----kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 121 (176)
T 2ld4_A 67 ILSGL---VPGSTT--LH----------------SAEILAEIARIL----RPGGCLFLKEPVETAVDNNSKVKTASKLCS 121 (176)
T ss_dssp EEECC---STTCCC--CC----------------CHHHHHHHHHHE----EEEEEEEEEEEEESSSCSSSSSCCHHHHHH
T ss_pred EEECC---hhhhcc--cC----------------HHHHHHHHHHHC----CCCEEEEEEcccccccccccccCCHHHHHH
Confidence 99721 111110 11 034677777876 9999999854221110 12445556
Q ss_pred HHHhCCc
Q 010971 327 ALKKRDV 333 (496)
Q Consensus 327 ~L~~~~~ 333 (496)
.|...++
T Consensus 122 ~l~~aGf 128 (176)
T 2ld4_A 122 ALTLSGL 128 (176)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 6777776
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.63 E-value=3.3e-05 Score=78.97 Aligned_cols=84 Identities=14% Similarity=0.188 Sum_probs=56.0
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc-ccCCCCcCEEEECC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK-VLGLNTVDRVLLDA 257 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~-~~~~~~fD~VLlDa 257 (496)
..+|||++||.||.++.+...--.-..|+|+|+++..++..+.|... ..+++.|...+.. .+....+|+|+.+|
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~-----~~~~~~Di~~~~~~~~~~~~~D~l~~gp 76 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-----TQLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----SCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc-----cccccCCHHHccHhHcCcCCcCEEEEcC
Confidence 35899999999999998876511113799999999999999998742 3356788877632 12112699999999
Q ss_pred CCCCCCcccC
Q 010971 258 PCSGTGVISK 267 (496)
Q Consensus 258 PCSg~G~i~r 267 (496)
||-+..+..+
T Consensus 77 PCq~fS~ag~ 86 (343)
T 1g55_A 77 PCQPFTRIGR 86 (343)
T ss_dssp C---------
T ss_pred CCcchhhcCC
Confidence 9988876644
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00017 Score=73.36 Aligned_cols=81 Identities=19% Similarity=0.227 Sum_probs=62.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
.+.+|||+|||.||.++.+.+. +--.|+|+|+++..++..+.|..... +.|...+.... ...+|+|+.+|
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~~-------~~Di~~~~~~~-~~~~D~l~~gp 79 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEKP-------EGDITQVNEKT-IPDHDILCAGF 79 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCCC-------BSCGGGSCGGG-SCCCSEEEEEC
T ss_pred CCCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCCC-------cCCHHHcCHhh-CCCCCEEEECC
Confidence 3578999999999999877654 33578999999999999999974322 57777663221 14699999999
Q ss_pred CCCCCCcccCC
Q 010971 258 PCSGTGVISKD 268 (496)
Q Consensus 258 PCSg~G~i~r~ 268 (496)
||-+..+..+.
T Consensus 80 PCQ~fS~ag~~ 90 (327)
T 2c7p_A 80 PCQAFSISGKQ 90 (327)
T ss_dssp CCTTTCTTSCC
T ss_pred CCCCcchhccc
Confidence 99888766554
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.002 Score=64.51 Aligned_cols=117 Identities=15% Similarity=0.115 Sum_probs=81.2
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc--C---CCeEEEEecCCCCCcccc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--G---VTNTIVCNYDGNELPKVL 245 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~--g---~~nv~v~~~D~~~~~~~~ 245 (496)
++++.+. ..+||=+|.|-|+..-.++..- +...|+.+|+++.-++.+++-+..+ | -.++.++..|+..+-...
T Consensus 77 ~l~~~p~-pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~ 154 (294)
T 3o4f_A 77 PLLAHGH-AKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT 154 (294)
T ss_dssp HHHHSSC-CCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCS
T ss_pred HHhhCCC-CCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhc
Confidence 3444444 4689999999999887776543 3458999999999999999887553 2 245999999999886543
Q ss_pred CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 246 ~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
.+.||+|++|.+-- .|. +...+ + .+.+..+.+.| +|||.+|.-+
T Consensus 155 -~~~yDvIi~D~~dp-~~~----~~~L~--t-----------~eFy~~~~~~L----~p~Gv~v~q~ 198 (294)
T 3o4f_A 155 -SQTFDVIISDCTDP-IGP----GESLF--T-----------SAFYEGCKRCL----NPGGIFVAQN 198 (294)
T ss_dssp -SCCEEEEEESCCCC-CCT----TCCSS--C-----------CHHHHHHHHTE----EEEEEEEEEE
T ss_pred -cccCCEEEEeCCCc-CCC----chhhc--C-----------HHHHHHHHHHh----CCCCEEEEec
Confidence 47899999998732 121 11111 1 23455555555 9999998643
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00019 Score=79.60 Aligned_cols=122 Identities=11% Similarity=0.064 Sum_probs=79.2
Q ss_pred CCeEeeccCCCchHHHHHHHHc---C---------CCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccc-
Q 010971 179 KERVIDMAAAPGGKTTYIAALM---K---------NTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKV- 244 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~---~---------~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~- 244 (496)
+..|||+|||+|-.+...+... + ...+|+|+|.|+..+..++.... +|..+ |.++.+|++++...
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence 3589999999999975433322 2 23499999999988877766665 78876 89999999987421
Q ss_pred --cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC--CCCcCC
Q 010971 245 --LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS--IMVTEN 320 (496)
Q Consensus 245 --~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS--i~~eEN 320 (496)
...+.+|+|+..-- |.+.- ..+.-+.|..+-+ .|+|||.++=+.|+ +.|-+.
T Consensus 489 ~~~~~ekVDIIVSElm----Gsfl~----------------nEL~pe~Ld~v~r----~Lkp~Gi~iP~~~t~ylaPi~~ 544 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELL----GSFGD----------------NELSPECLDGVTG----FLKPTTISIPQKYTSYVKPIMS 544 (745)
T ss_dssp HHTTCCCCSEEEECCC----BTTBG----------------GGSHHHHHHTTGG----GSCTTCEEESCEEEEEEEEEEC
T ss_pred ccCCCCcccEEEEecc----ccccc----------------hhccHHHHHHHHH----hCCCCcEEECCccEEEEEEecC
Confidence 01378999998654 22210 0112234444433 46999999855555 444566
Q ss_pred HHHHH
Q 010971 321 EAVID 325 (496)
Q Consensus 321 E~vV~ 325 (496)
+..-.
T Consensus 545 ~~l~~ 549 (745)
T 3ua3_A 545 THIHQ 549 (745)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00067 Score=67.87 Aligned_cols=77 Identities=17% Similarity=0.150 Sum_probs=52.3
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec-CCCCCccccCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY-DGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~-D~~~~~~~~~~~~fD~VL 254 (496)
+.++.+|||+||||||++.+++.+.+ ...|+|+|+-..--. --..++.+|...|++... |...++. ..+|.|+
T Consensus 92 l~~~~~VlDLGaapGGwsq~~~~~~g-v~~V~avdvG~~~he-~P~~~~ql~w~lV~~~~~~Dv~~l~~----~~~D~iv 165 (321)
T 3lkz_A 92 LEPVGKVIDLGCGRGGWCYYMATQKR-VQEVRGYTKGGPGHE-EPQLVQSYGWNIVTMKSGVDVFYRPS----ECCDTLL 165 (321)
T ss_dssp CCCCEEEEEETCTTCHHHHHHTTCTT-EEEEEEECCCSTTSC-CCCCCCBTTGGGEEEECSCCTTSSCC----CCCSEEE
T ss_pred CCCCCEEEEeCCCCCcHHHHHHhhcC-CCEEEEEEcCCCCcc-CcchhhhcCCcceEEEeccCHhhCCC----CCCCEEE
Confidence 46888999999999999987776643 358999998653100 000012334444777766 8766653 5699999
Q ss_pred ECCC
Q 010971 255 LDAP 258 (496)
Q Consensus 255 lDaP 258 (496)
||.-
T Consensus 166 cDig 169 (321)
T 3lkz_A 166 CDIG 169 (321)
T ss_dssp ECCC
T ss_pred EECc
Confidence 9975
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0008 Score=69.70 Aligned_cols=121 Identities=13% Similarity=0.120 Sum_probs=78.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc-----CC---CeEEEEecCCCCCcccc--CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-----GV---TNTIVCNYDGNELPKVL--GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~-----g~---~nv~v~~~D~~~~~~~~--~~ 247 (496)
+..+||=+|.|-|+....+... + ...|+.+|+++.-++.+++-+..+ .. .++.++..|+..+-+.. ..
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 4579999999999988877654 3 368999999999999998865332 11 23788999998764321 23
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE-EeCCCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY-STCSIM 316 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVY-STCSi~ 316 (496)
..||+|++|++-...+. .|. .. ......++.+..+.+.| +|||.+|. +.|-+.
T Consensus 283 ~~yDvIIvDl~D~~~s~---~p~--------g~-a~~Lft~eFy~~~~~~L----~p~GVlv~Q~~s~~~ 336 (381)
T 3c6k_A 283 REFDYVINDLTAVPIST---SPE--------ED-STWEFLRLILDLSMKVL----KQDGKYFTQGNCVNL 336 (381)
T ss_dssp CCEEEEEEECCSSCCCC---C-------------CHHHHHHHHHHHHHHTE----EEEEEEEEEEEETTC
T ss_pred CceeEEEECCCCCcccC---ccc--------Cc-chHHHHHHHHHHHHHhc----CCCCEEEEecCCCcc
Confidence 57999999975211110 110 00 00123355666666665 99999886 445444
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00054 Score=75.46 Aligned_cols=120 Identities=13% Similarity=0.053 Sum_probs=78.8
Q ss_pred CCeEeeccCCCchH---HHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEE
Q 010971 179 KERVIDMAAAPGGK---TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 179 g~~VLDmcAgpGgK---T~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
+..|||+|||+|-. ++..++......+|+|+|.|+. ...+.+..+.+|..+ |+++++|++++. + ++++|+|+
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~~~dkVtVI~gd~eev~--L-PEKVDIIV 433 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEEWGSQVTVVSSDMREWV--A-PEKADIIV 433 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHTTGGGEEEEESCTTTCC--C-SSCEEEEE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhccCCCeEEEEeCcceecc--C-CcccCEEE
Confidence 34799999999988 4444444332237999999985 556677888899876 999999999874 2 27899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC--CcCCHHHHHH
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM--VTENEAVIDY 326 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~--~eENE~vV~~ 326 (496)
..-= |.+.+. +.. ..+|.++-++ |||||.++=+.|+++ +-+.+..-..
T Consensus 434 SEwM--G~fLl~---------------E~m---levL~Ardr~----LKPgGimiPs~atlyiapi~~~~l~~e 483 (637)
T 4gqb_A 434 SELL--GSFADN---------------ELS---PECLDGAQHF----LKDDGVSIPGEYTSFLAPISSSKLYNE 483 (637)
T ss_dssp CCCC--BTTBGG---------------GCH---HHHHHHHGGG----EEEEEEEESCEEEEEEEEEECHHHHHH
T ss_pred EEcC--cccccc---------------cCC---HHHHHHHHHh----cCCCcEEccccceEEEEEecCHHHHHH
Confidence 7532 222111 111 1345544444 599999986666543 4466654443
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.001 Score=67.65 Aligned_cols=78 Identities=13% Similarity=0.142 Sum_probs=57.7
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEE-EEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc-ccCCCCcCEEEEC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLI-YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK-VLGLNTVDRVLLD 256 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V-~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~-~~~~~~fD~VLlD 256 (496)
.-+|+|+|||.||.++.+.+.--+.-.| +|+|+++..++..+.|.... +.+.|.+.+.. .+....+|+|+..
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~------~~~~DI~~~~~~~i~~~~~Dil~gg 83 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE------VQVKNLDSISIKQIESLNCNTWFMS 83 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC------CBCCCTTTCCHHHHHHTCCCEEEEC
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC------cccCChhhcCHHHhccCCCCEEEec
Confidence 4589999999999998776541011356 79999999999999997322 45678777632 1211369999999
Q ss_pred CCCCCC
Q 010971 257 APCSGT 262 (496)
Q Consensus 257 aPCSg~ 262 (496)
|||-+.
T Consensus 84 pPCQ~f 89 (327)
T 3qv2_A 84 PPCQPY 89 (327)
T ss_dssp CCCTTC
T ss_pred CCccCc
Confidence 999998
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00097 Score=67.91 Aligned_cols=82 Identities=16% Similarity=0.221 Sum_probs=59.1
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc-ccCCCCcCEEEECCC
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK-VLGLNTVDRVLLDAP 258 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~-~~~~~~fD~VLlDaP 258 (496)
-+|+|+|||.||.++-+.+.--+.-.|+|+|+++..++..+.|... ..+.+.|...+.. .+....+|+|+..+|
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~-----~~~~~~DI~~~~~~~~~~~~~D~l~ggpP 78 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE-----TNLLNRNIQQLTPQVIKKWNVDTILMSPP 78 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----SCEECCCGGGCCHHHHHHTTCCEEEECCC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC-----CceeccccccCCHHHhccCCCCEEEecCC
Confidence 4799999999999987766511113588999999999999888642 2345677766532 121136999999999
Q ss_pred CCCCCccc
Q 010971 259 CSGTGVIS 266 (496)
Q Consensus 259 CSg~G~i~ 266 (496)
|-+.....
T Consensus 79 CQ~fS~ag 86 (333)
T 4h0n_A 79 CQPFTRNG 86 (333)
T ss_dssp CCCSEETT
T ss_pred Ccchhhhh
Confidence 98875544
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0016 Score=65.15 Aligned_cols=84 Identities=13% Similarity=0.146 Sum_probs=61.0
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc-c-CCCCcCEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGL-IYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-L-GLNTVDRV 253 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~-V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~-~-~~~~fD~V 253 (496)
..+.+|||+|||.||.++.+.++ +-... |+|+|+++..++..+.|.. +..+...|.+.+... + ....+|+|
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~~-----~~~~~~~DI~~i~~~~i~~~~~~Dll 87 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRHQ-----GKIMYVGDVRSVTQKHIQEWGPFDLV 87 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHTT-----TCEEEECCGGGCCHHHHHHTCCCSEE
T ss_pred CCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhCC-----CCceeCCChHHccHHHhcccCCcCEE
Confidence 45679999999999999877654 11112 6999999999998888752 335667888776321 1 11479999
Q ss_pred EECCCCCCCCccc
Q 010971 254 LLDAPCSGTGVIS 266 (496)
Q Consensus 254 LlDaPCSg~G~i~ 266 (496)
+..+||.+..+..
T Consensus 88 ~ggpPCQ~fS~ag 100 (295)
T 2qrv_A 88 IGGSPCNDLSIVN 100 (295)
T ss_dssp EECCCCGGGBTTC
T ss_pred EecCCCccccccC
Confidence 9999998766554
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0064 Score=61.28 Aligned_cols=131 Identities=16% Similarity=0.085 Sum_probs=79.4
Q ss_pred CCCeEeeccCCCchHHHHHHH---HcCCCcE--EEEEeCCH--------HHHHHHHHH-HHHc---CCCe--EEEEecCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAA---LMKNTGL--IYANEMKA--------SRLKSLTAN-LHRM---GVTN--TIVCNYDG 238 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~---l~~~~g~--V~A~D~s~--------~rl~~l~~n-l~r~---g~~n--v~v~~~D~ 238 (496)
+.-+|||+|=|+|--++...+ ...+... .+++|..+ .-+..+.+. ++.+ .-.+ ..+..+|+
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 345899999999987643322 2233343 46777532 111222222 2222 1123 35667888
Q ss_pred CCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCc
Q 010971 239 NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT 318 (496)
Q Consensus 239 ~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~e 318 (496)
...-..+....||.|++|+= .-+++|+++ + .+++....+++ +|||+|+.-||+
T Consensus 176 ~~~l~~l~~~~~Da~flDgF-----sP~kNPeLW---s-----------~e~f~~l~~~~----~pgg~laTYtaa---- 228 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDAF-----SPYKNPELW---T-----------LDFLSLIKERI----DEKGYWVSYSSS---- 228 (308)
T ss_dssp HHHGGGCCSCCEEEEEECCS-----CTTTSGGGG---S-----------HHHHHHHHTTE----EEEEEEEESCCC----
T ss_pred HHHHhhhcccceeEEEeCCC-----CcccCcccC---C-----------HHHHHHHHHHh----CCCcEEEEEeCc----
Confidence 65433333347999999961 126788874 3 34566666765 999999865555
Q ss_pred CCHHHHHHHHHhCCcEEeec
Q 010971 319 ENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 319 ENE~vV~~~L~~~~~~lv~~ 338 (496)
..|...|...||.+..+
T Consensus 229 ---g~VRR~L~~aGF~V~k~ 245 (308)
T 3vyw_A 229 ---LSVRKSLLTLGFKVGSS 245 (308)
T ss_dssp ---HHHHHHHHHTTCEEEEE
T ss_pred ---HHHHHHHHHCCCEEEec
Confidence 57889999988887654
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0062 Score=60.86 Aligned_cols=79 Identities=16% Similarity=0.144 Sum_probs=60.1
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCCC
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPC 259 (496)
.+|||++||.||.++-+-+. +--.|+|+|+++..++..+.|.. ..++..|.+.+.... ...+|+|+.-|||
T Consensus 1 mkvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~~------~~~~~~DI~~i~~~~-~~~~D~l~ggpPC 71 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNHS------AKLIKGDISKISSDE-FPKCDGIIGGPPS 71 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHCC------SEEEESCGGGCCGGG-SCCCSEEECCCCG
T ss_pred CeEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHCC------CCcccCChhhCCHhh-CCcccEEEecCCC
Confidence 37999999999999877553 22378899999999999988852 245678888774321 2579999999999
Q ss_pred CCCCcccC
Q 010971 260 SGTGVISK 267 (496)
Q Consensus 260 Sg~G~i~r 267 (496)
-+..+..+
T Consensus 72 Q~fS~ag~ 79 (331)
T 3ubt_Y 72 QSWSEGGS 79 (331)
T ss_dssp GGTEETTE
T ss_pred CCcCCCCC
Confidence 88765543
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0046 Score=61.38 Aligned_cols=49 Identities=14% Similarity=-0.008 Sum_probs=41.9
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV 228 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~ 228 (496)
.+|+.|||.+||+|..+..++.+ ...++++|+++..++.+++++.....
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~~~ 282 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFAREVP 282 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHST
T ss_pred CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 68999999999999988765553 25899999999999999999988643
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0053 Score=63.97 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=53.3
Q ss_pred cCCCCCCeEeeccCCCchHHHHHH-HHcCCCcEEEEEeCCHHHHHHHHHHHHH---cCC-CeEEEEec
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIA-ALMKNTGLIYANEMKASRLKSLTANLHR---MGV-TNTIVCNY 236 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA-~l~~~~g~V~A~D~s~~rl~~l~~nl~r---~g~-~nv~v~~~ 236 (496)
+.+.+|..|+|+||..|..|+.++ ...++.+.|+|+|.++.-+..+++|+.. .+. .++.+++.
T Consensus 222 ~~l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~ 289 (409)
T 2py6_A 222 LRFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGC 289 (409)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECS
T ss_pred cccCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEe
Confidence 345789999999999999999888 4555558999999999999999999998 356 78877654
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.018 Score=59.50 Aligned_cols=131 Identities=11% Similarity=0.079 Sum_probs=71.2
Q ss_pred CCeEeeccCCCchHHHHHHHHc--------------CCCcEEEEEeCCHHHHHHHHHHHHHcC-------------CCeE
Q 010971 179 KERVIDMAAAPGGKTTYIAALM--------------KNTGLIYANEMKASRLKSLTANLHRMG-------------VTNT 231 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~--------------~~~g~V~A~D~s~~rl~~l~~nl~r~g-------------~~nv 231 (496)
..+|+|+|||+|..|+.+...+ .+.-.|+.+|+-..-...+-..+.... ...+
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 5899999999999999874432 134578888876666555555544321 0111
Q ss_pred EEEecCCCC-CccccCCCCcCEEEECCCCCCCCcccCCchhh--------------cc-CCHHHHHHHH--HHHHHHHHH
Q 010971 232 IVCNYDGNE-LPKVLGLNTVDRVLLDAPCSGTGVISKDESVK--------------TS-KSLEDIQKCS--YLQKQLILA 293 (496)
Q Consensus 232 ~v~~~D~~~-~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k--------------~~-~s~~~i~~l~--~lQ~~LL~~ 293 (496)
++.+.+.. +...++.++||.|+. +..+--+++.|... .. -++. +...- +.|++ +..
T Consensus 133 -f~~gvpgSFy~rlfP~~S~d~v~S---s~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~-v~~ay~~Qf~~D-~~~ 206 (374)
T 3b5i_A 133 -FVAGVPGSFYRRLFPARTIDFFHS---AFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEK-TTTAYKRQFQAD-LAE 206 (374)
T ss_dssp -EEEEEESCTTSCCSCTTCEEEEEE---ESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHH-HHHHHHHHHHHH-HHH
T ss_pred -EEEecChhhhcccCCCcceEEEEe---cceeeeeccCchhhhccccccccCCceEeCCCCHH-HHHHHHHHHHHH-HHH
Confidence 22222222 233345589999986 23333334444221 11 1333 33322 22222 333
Q ss_pred HHHhhhhcCCCCcEEEEEeCCC
Q 010971 294 AIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 294 A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.++.....|+|||++|.++..-
T Consensus 207 fL~~ra~eL~pGG~mvl~~~gr 228 (374)
T 3b5i_A 207 FLRARAAEVKRGGAMFLVCLGR 228 (374)
T ss_dssp HHHHHHHHEEEEEEEEEEEEEC
T ss_pred HHHHHHHHhCCCCEEEEEEecC
Confidence 3333344469999999988754
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0045 Score=66.13 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=57.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc-------------
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV------------- 244 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~------------- 244 (496)
..-+|||+|||.||.++-+.+. +--.|+|+|+++..++..+.|.... .+..+++.|...+...
T Consensus 87 ~~~~viDLFaG~GGlslG~~~a--G~~~v~avE~d~~A~~ty~~N~~~~--p~~~~~~~DI~~i~~~~~~~~~~~~~~~~ 162 (482)
T 3me5_A 87 YAFRFIDLFAGIGGIRRGFESI--GGQCVFTSEWNKHAVRTYKANHYCD--PATHHFNEDIRDITLSHQEGVSDEAAAEH 162 (482)
T ss_dssp CSEEEEEESCTTSHHHHHHHTT--TEEEEEEECCCHHHHHHHHHHSCCC--TTTCEEESCTHHHHCTTCTTSCHHHHHHH
T ss_pred ccceEEEecCCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHhcccC--CCcceeccchhhhhhccccccchhhHHhh
Confidence 3568999999999999877543 2236899999999999998886211 2234556777655310
Q ss_pred --cCCCCcCEEEECCCCCCCCccc
Q 010971 245 --LGLNTVDRVLLDAPCSGTGVIS 266 (496)
Q Consensus 245 --~~~~~fD~VLlDaPCSg~G~i~ 266 (496)
.....+|+|+.-|||-+..+..
T Consensus 163 i~~~~~~~Dvl~gGpPCQ~FS~AG 186 (482)
T 3me5_A 163 IRQHIPEHDVLLAGFPCQPFSLAG 186 (482)
T ss_dssp HHHHSCCCSEEEEECCCCCC----
T ss_pred hhhcCCCCCEEEecCCCcchhhhC
Confidence 0114699999999998876654
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0095 Score=53.88 Aligned_cols=64 Identities=14% Similarity=0.102 Sum_probs=47.7
Q ss_pred CCCCeEeeccCCCc-hHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEE-E
Q 010971 177 QEKERVIDMAAAPG-GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV-L 254 (496)
Q Consensus 177 ~~g~~VLDmcAgpG-gKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~V-L 254 (496)
.++.+|||+|||+| ..+.+|+... ...|+|+|+++..+. ++..|........ ...||+| .
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~---------------~v~dDiF~P~~~~-Y~~~DLIYs 95 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG---------------IVRDDITSPRMEI-YRGAALIYS 95 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT---------------EECCCSSSCCHHH-HTTEEEEEE
T ss_pred CCCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc---------------eEEccCCCCcccc-cCCcCEEEE
Confidence 45789999999999 5888887643 246999999987665 6777776532111 1489999 8
Q ss_pred ECCC
Q 010971 255 LDAP 258 (496)
Q Consensus 255 lDaP 258 (496)
+.||
T Consensus 96 irPP 99 (153)
T 2k4m_A 96 IRPP 99 (153)
T ss_dssp ESCC
T ss_pred cCCC
Confidence 9998
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.011 Score=60.62 Aligned_cols=82 Identities=16% Similarity=0.073 Sum_probs=60.8
Q ss_pred cccEEEeCCc-chhHHHhcCCCC------CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 010971 157 AGFYMLQSAS-SFLPVMALAPQE------KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT 229 (496)
Q Consensus 157 ~G~~~iQd~s-S~l~v~~L~~~~------g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~ 229 (496)
-|.-.+-|+. ..-.+.++++.+ ++.|||+|.|+|..|..|+.... ...|+|+|+++.-+..|+..+ ...
T Consensus 30 lGQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~---~~~ 105 (353)
T 1i4w_A 30 YGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF---EGS 105 (353)
T ss_dssp GGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT---TTS
T ss_pred CCcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc---cCC
Confidence 3433343443 233456666654 58999999999999999998643 257999999999888888776 246
Q ss_pred eEEEEecCCCCCc
Q 010971 230 NTIVCNYDGNELP 242 (496)
Q Consensus 230 nv~v~~~D~~~~~ 242 (496)
++.++++|+..+.
T Consensus 106 ~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 106 PLQILKRDPYDWS 118 (353)
T ss_dssp SCEEECSCTTCHH
T ss_pred CEEEEECCccchh
Confidence 8999999997653
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.011 Score=57.42 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=39.9
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV 228 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~ 228 (496)
..+|+.|||.+||+|..+.....+ + ..++++|+++..+..+++|+..+++
T Consensus 210 ~~~~~~vlD~f~GsGtt~~~a~~~-g--r~~ig~e~~~~~~~~~~~r~~~~~~ 259 (260)
T 1g60_A 210 SNPNDLVLDCFMGSGTTAIVAKKL-G--RNFIGCDMNAEYVNQANFVLNQLEI 259 (260)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHC---
T ss_pred CCCCCEEEECCCCCCHHHHHHHHc-C--CeEEEEeCCHHHHHHHHHHHHhccC
Confidence 368999999999999877654443 2 5899999999999999999987765
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.026 Score=56.97 Aligned_cols=99 Identities=23% Similarity=0.323 Sum_probs=63.1
Q ss_pred cCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecC---CCCC----cccc
Q 010971 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD---GNEL----PKVL 245 (496)
Q Consensus 174 L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D---~~~~----~~~~ 245 (496)
..+++|++||-.+||+ |..++++|..++ ...|+++|.++.|++.+ +.+|.+.+ +..+ ...+ ....
T Consensus 167 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a----~~lGa~~v--i~~~~~~~~~~~~~i~~~~ 239 (356)
T 1pl8_A 167 GGVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKA----KEIGADLV--LQISKESPQEIARKVEGQL 239 (356)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHH----HHTTCSEE--EECSSCCHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHH----HHhCCCEE--EcCcccccchHHHHHHHHh
Confidence 4688999999998754 445555665553 23899999999998765 45788643 2322 0111 1111
Q ss_pred CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 246 ~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
. ..||+||- |+|.. ..+..+++++ ++||++|...
T Consensus 240 ~-~g~D~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~iv~~G 273 (356)
T 1pl8_A 240 G-CKPEVTIE---CTGAE-------------------------ASIQAGIYAT----RSGGTLVLVG 273 (356)
T ss_dssp T-SCCSEEEE---CSCCH-------------------------HHHHHHHHHS----CTTCEEEECS
T ss_pred C-CCCCEEEE---CCCCh-------------------------HHHHHHHHHh----cCCCEEEEEe
Confidence 2 47999975 44321 1356677776 9999998643
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.089 Score=54.51 Aligned_cols=77 Identities=16% Similarity=0.146 Sum_probs=45.6
Q ss_pred CCeEeeccCCCchHHHHHHHHc----------------CCCcEEEEEeCCHHHH-------HHHHHHH-HHcCC-CeEEE
Q 010971 179 KERVIDMAAAPGGKTTYIAALM----------------KNTGLIYANEMKASRL-------KSLTANL-HRMGV-TNTIV 233 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~----------------~~~g~V~A~D~s~~rl-------~~l~~nl-~r~g~-~nv~v 233 (496)
..+|+|+|||+|..|+.+.+.+ .+.-.|+.+|+-..=. ....+.+ +..|- .+..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 4789999999999999877661 1234788999762211 1111111 22332 12234
Q ss_pred EecCCCCC-ccccCCCCcCEEEE
Q 010971 234 CNYDGNEL-PKVLGLNTVDRVLL 255 (496)
Q Consensus 234 ~~~D~~~~-~~~~~~~~fD~VLl 255 (496)
+.+.+..| ...++.++||.|+.
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~S 155 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHS 155 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEE
T ss_pred EEecchhhhhccCCCCceEEEEe
Confidence 44554443 44556689999975
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.039 Score=55.21 Aligned_cols=97 Identities=20% Similarity=0.231 Sum_probs=65.3
Q ss_pred CCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--CCCCcC
Q 010971 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--GLNTVD 251 (496)
Q Consensus 175 ~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--~~~~fD 251 (496)
.+++|++||-.+||+ |..++++|..++ ..|+++|.++.+++.+ +++|.+.+ ++.+...+.... ..+.+|
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~----~~lGa~~~--i~~~~~~~~~~~~~~~g~~d 234 (340)
T 3s2e_A 163 DTRPGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAKLNLA----RRLGAEVA--VNARDTDPAAWLQKEIGGAH 234 (340)
T ss_dssp TCCTTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHHHHHH----HHTTCSEE--EETTTSCHHHHHHHHHSSEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHH----HHcCCCEE--EeCCCcCHHHHHHHhCCCCC
Confidence 578999999998876 666677777664 4899999999998865 45787653 333322221111 013799
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.|+.. +|.+ ..+..+++++ ++||++|..
T Consensus 235 ~vid~---~g~~-------------------------~~~~~~~~~l----~~~G~iv~~ 262 (340)
T 3s2e_A 235 GVLVT---AVSP-------------------------KAFSQAIGMV----RRGGTIALN 262 (340)
T ss_dssp EEEES---SCCH-------------------------HHHHHHHHHE----EEEEEEEEC
T ss_pred EEEEe---CCCH-------------------------HHHHHHHHHh----ccCCEEEEe
Confidence 99863 3322 2367777876 999999864
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.028 Score=56.52 Aligned_cols=91 Identities=12% Similarity=0.070 Sum_probs=62.7
Q ss_pred CCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEE
Q 010971 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 175 ~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
.+++|++||-.+||+ |..++++|..++ ..|+++|.++.+++.+ +.+|.+.+. .|... +. ..||+|
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~----~~lGa~~v~---~~~~~----~~-~~~D~v 238 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEHKKQDA----LSMGVKHFY---TDPKQ----CK-EELDFI 238 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSTTHHHH----HHTTCSEEE---SSGGG----CC-SCEEEE
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHH----HhcCCCeec---CCHHH----Hh-cCCCEE
Confidence 678999999998754 455556666553 4899999999998865 458887654 33222 21 379999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
|- |+|.. ..+..+++++ ++||++|..
T Consensus 239 id---~~g~~-------------------------~~~~~~~~~l----~~~G~iv~~ 264 (348)
T 3two_A 239 IS---TIPTH-------------------------YDLKDYLKLL----TYNGDLALV 264 (348)
T ss_dssp EE---CCCSC-------------------------CCHHHHHTTE----EEEEEEEEC
T ss_pred EE---CCCcH-------------------------HHHHHHHHHH----hcCCEEEEE
Confidence 75 44432 0256777876 999999864
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.037 Score=56.32 Aligned_cols=99 Identities=19% Similarity=0.262 Sum_probs=64.2
Q ss_pred cCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc------cC
Q 010971 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV------LG 246 (496)
Q Consensus 174 L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~------~~ 246 (496)
..+++|++||-.+||+ |..++++|..++ ...|+++|.++.+++.++ .+|...+ ++....++... ..
T Consensus 178 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~v--i~~~~~~~~~~i~~~~~~~ 250 (370)
T 4ej6_A 178 SGIKAGSTVAILGGGVIGLLTVQLARLAG-ATTVILSTRQATKRRLAE----EVGATAT--VDPSAGDVVEAIAGPVGLV 250 (370)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHH----HHTCSEE--ECTTSSCHHHHHHSTTSSS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHH----HcCCCEE--ECCCCcCHHHHHHhhhhcc
Confidence 4678999999998754 444555665553 248999999999987654 4787653 33322222111 11
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.+.||+||- |+|.+ ..+..+++++ ++||++|..
T Consensus 251 ~gg~Dvvid---~~G~~-------------------------~~~~~~~~~l----~~~G~vv~~ 283 (370)
T 4ej6_A 251 PGGVDVVIE---CAGVA-------------------------ETVKQSTRLA----KAGGTVVIL 283 (370)
T ss_dssp TTCEEEEEE---CSCCH-------------------------HHHHHHHHHE----EEEEEEEEC
T ss_pred CCCCCEEEE---CCCCH-------------------------HHHHHHHHHh----ccCCEEEEE
Confidence 247999975 55543 2367778876 999999863
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.14 Score=51.35 Aligned_cols=98 Identities=19% Similarity=0.259 Sum_probs=61.7
Q ss_pred cCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCC-CCCccc----cC-
Q 010971 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKV----LG- 246 (496)
Q Consensus 174 L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~-~~~~~~----~~- 246 (496)
..+++|++||-.+||+ |..++++|..++ ..|+++|.++.+++.++ .+|.+.+ ++.+- ..+... ..
T Consensus 164 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~----~lGa~~~--~~~~~~~~~~~~i~~~~~~ 235 (352)
T 1e3j_A 164 AGVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAK----NCGADVT--LVVDPAKEEESSIIERIRS 235 (352)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH----HTTCSEE--EECCTTTSCHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHH----HhCCCEE--EcCcccccHHHHHHHHhcc
Confidence 4678999999998654 444455555543 35999999999988664 5788643 23221 222111 11
Q ss_pred --CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 247 --LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 247 --~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
...||+||- |+|.. ..+..+++++ ++||++|..
T Consensus 236 ~~g~g~D~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~iv~~ 270 (352)
T 1e3j_A 236 AIGDLPNVTID---CSGNE-------------------------KCITIGINIT----RTGGTLMLV 270 (352)
T ss_dssp HSSSCCSEEEE---CSCCH-------------------------HHHHHHHHHS----CTTCEEEEC
T ss_pred ccCCCCCEEEE---CCCCH-------------------------HHHHHHHHHH----hcCCEEEEE
Confidence 247999985 33321 1356677776 999999864
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.27 E-value=0.02 Score=58.63 Aligned_cols=111 Identities=16% Similarity=0.209 Sum_probs=64.2
Q ss_pred CCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCC-Cc----cccCCC
Q 010971 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE-LP----KVLGLN 248 (496)
Q Consensus 175 ~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~-~~----~~~~~~ 248 (496)
.+++|++||-++||+ |..++++|..++ ...|+++|.++.|++.++ .+|.. + ++..... +. ......
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~~~~~~a~----~lGa~-~--i~~~~~~~~~~~v~~~t~g~ 253 (398)
T 1kol_A 182 GVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAK----AQGFE-I--ADLSLDTPLHEQIAALLGEP 253 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHH----HTTCE-E--EETTSSSCHHHHHHHHHSSS
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHH----HcCCc-E--EccCCcchHHHHHHHHhCCC
Confidence 678999999988755 555566666653 237999999999988764 57874 2 3332211 11 111224
Q ss_pred CcCEEEECCCCCCCCcccCCchh-hccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 249 TVDRVLLDAPCSGTGVISKDESV-KTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~-k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.||+||- |+|........+. ...+. ...+..+++++ ++||++|..
T Consensus 254 g~Dvvid---~~G~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l----~~~G~iv~~ 299 (398)
T 1kol_A 254 EVDCAVD---AVGFEARGHGHEGAKHEAP-----------ATVLNSLMQVT----RVAGKIGIP 299 (398)
T ss_dssp CEEEEEE---CCCTTCBCSSTTGGGSBCT-----------THHHHHHHHHE----EEEEEEEEC
T ss_pred CCCEEEE---CCCCcccccccccccccch-----------HHHHHHHHHHH----hcCCEEEEe
Confidence 7999975 5543211000000 00000 11366777887 999998764
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.016 Score=59.48 Aligned_cols=112 Identities=20% Similarity=0.234 Sum_probs=65.9
Q ss_pred cCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC-cc----ccCC
Q 010971 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PK----VLGL 247 (496)
Q Consensus 174 L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~-~~----~~~~ 247 (496)
..+++|++||-.+||+ |..++++|..++ ...|+++|.++.|++.+ +.+|.. +++.+...+ .. ....
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a----~~lGa~---~i~~~~~~~~~~~~~~~~~g 252 (398)
T 2dph_A 181 AGVKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPERLKLL----SDAGFE---TIDLRNSAPLRDQIDQILGK 252 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHH----HTTTCE---EEETTSSSCHHHHHHHHHSS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHH----HHcCCc---EEcCCCcchHHHHHHHHhCC
Confidence 3578999999999866 666677777664 34899999999998765 457873 334332222 11 1122
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
..||+||- |+|.......+++..... -..+..+++++ ++||++|..
T Consensus 253 ~g~Dvvid---~~g~~~~~~~~~~~~~~~-----------~~~~~~~~~~l----~~gG~iv~~ 298 (398)
T 2dph_A 253 PEVDCGVD---AVGFEAHGLGDEANTETP-----------NGALNSLFDVV----RAGGAIGIP 298 (398)
T ss_dssp SCEEEEEE---CSCTTCBCSGGGTTSBCT-----------THHHHHHHHHE----EEEEEEECC
T ss_pred CCCCEEEE---CCCCcccccccccccccc-----------HHHHHHHHHHH----hcCCEEEEe
Confidence 37999975 444321000000000000 01366777876 999998753
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.012 Score=65.11 Aligned_cols=131 Identities=18% Similarity=0.104 Sum_probs=80.2
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcC---------C--CcEEEEEeC---CHHHHHHHH-----------HHHHHc-----
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMK---------N--TGLIYANEM---KASRLKSLT-----------ANLHRM----- 226 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~---------~--~g~V~A~D~---s~~rl~~l~-----------~nl~r~----- 226 (496)
++.-+|||+|-|+|...+.+.+... . .-.++++|. +..-+..+. +.+..+
T Consensus 57 ~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (689)
T 3pvc_A 57 QQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA 136 (689)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred CCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence 3456999999999999988777641 1 136899999 444444321 112222
Q ss_pred CC-----C----eEEEEecCCCCCccccC---CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHH
Q 010971 227 GV-----T----NTIVCNYDGNELPKVLG---LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAA 294 (496)
Q Consensus 227 g~-----~----nv~v~~~D~~~~~~~~~---~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A 294 (496)
|+ . .+.+..+|+...-..+. ...||.+++|+.. -.++|+++ +. +++...
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~-----p~~np~~w---~~-----------~~~~~l 197 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFA-----PAKNPDMW---NE-----------QLFNAM 197 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSC-----C--CCTTC---SH-----------HHHHHH
T ss_pred CceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCC-----CCCChhhh---hH-----------HHHHHH
Confidence 22 1 24566778765422221 3679999999752 24677753 32 344444
Q ss_pred HHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEEee
Q 010971 295 IDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVP 337 (496)
Q Consensus 295 ~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~lv~ 337 (496)
.+++ +|||++...||. ..|...|...++.+..
T Consensus 198 ~~~~----~~g~~~~t~~~~-------~~vr~~l~~aGf~~~~ 229 (689)
T 3pvc_A 198 ARMT----RPGGTFSTFTAA-------GFVRRGLQQAGFNVTK 229 (689)
T ss_dssp HHHE----EEEEEEEESCCC-------HHHHHHHHHTTCEEEE
T ss_pred HHHh----CCCCEEEeccCc-------HHHHHHHHhCCeEEEe
Confidence 5554 999998766665 4677778887776654
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.035 Score=55.65 Aligned_cols=97 Identities=14% Similarity=0.134 Sum_probs=64.7
Q ss_pred CCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc----cCCCC
Q 010971 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV----LGLNT 249 (496)
Q Consensus 175 ~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~----~~~~~ 249 (496)
.+++|++||-.+||+ |..++++|..++ ...|+++|.++.|++.+ +.+|.+.+. ..+. .+... .....
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~~~~~----~~lGa~~~i--~~~~-~~~~~v~~~t~g~g 239 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDRLALA----REVGADAAV--KSGA-GAADAIRELTGGQG 239 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHHHHHH----HHTTCSEEE--ECST-THHHHHHHHHGGGC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHH----HHcCCCEEE--cCCC-cHHHHHHHHhCCCC
Confidence 578999999998765 555566666663 36899999999998866 457886543 2322 22111 11237
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
||+||- |+|.. ..+..+++++ ++||++|..
T Consensus 240 ~d~v~d---~~G~~-------------------------~~~~~~~~~l----~~~G~iv~~ 269 (345)
T 3jv7_A 240 ATAVFD---FVGAQ-------------------------STIDTAQQVV----AVDGHISVV 269 (345)
T ss_dssp EEEEEE---SSCCH-------------------------HHHHHHHHHE----EEEEEEEEC
T ss_pred CeEEEE---CCCCH-------------------------HHHHHHHHHH----hcCCEEEEE
Confidence 999875 44431 2467778887 999999863
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=94.94 E-value=0.057 Score=54.33 Aligned_cols=99 Identities=20% Similarity=0.248 Sum_probs=62.6
Q ss_pred cCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc----ccCCC
Q 010971 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK----VLGLN 248 (496)
Q Consensus 174 L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~----~~~~~ 248 (496)
..+++|++||-.+||+ |..++++|..++ ...|+++|.++.|++.+ +++|.+.+ +..+...+.. .....
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~----~~lGa~~v--i~~~~~~~~~~v~~~t~g~ 234 (352)
T 3fpc_A 162 ANIKLGDTVCVIGIGPVGLMSVAGANHLG-AGRIFAVGSRKHCCDIA----LEYGATDI--INYKNGDIVEQILKATDGK 234 (352)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSSEEEECCCHHHHHHH----HHHTCCEE--ECGGGSCHHHHHHHHTTTC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHH----HHhCCceE--EcCCCcCHHHHHHHHcCCC
Confidence 4678999999998654 444445555442 23799999999988765 45787643 3332222211 11224
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.||+||- |+|.. ..+..+++++ ++||++|..
T Consensus 235 g~D~v~d---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 265 (352)
T 3fpc_A 235 GVDKVVI---AGGDV-------------------------HTFAQAVKMI----KPGSDIGNV 265 (352)
T ss_dssp CEEEEEE---CSSCT-------------------------THHHHHHHHE----EEEEEEEEC
T ss_pred CCCEEEE---CCCCh-------------------------HHHHHHHHHH----hcCCEEEEe
Confidence 7999974 44432 1367778887 999998753
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.054 Score=55.19 Aligned_cols=96 Identities=11% Similarity=0.068 Sum_probs=61.2
Q ss_pred CCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEE
Q 010971 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 175 ~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
.+++|++||-.+||+ |..++++|..++ ..|+++|.++.+++.++ .+|...+ +..+...+..... ..||+|
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~Vi~~~~~~~~~~~a~----~lGa~~v--i~~~~~~~~~~~~-~g~Dvv 261 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAK----ALGADEV--VNSRNADEMAAHL-KSFDFI 261 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHH----HHTCSEE--EETTCHHHHHTTT-TCEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH----HcCCcEE--eccccHHHHHHhh-cCCCEE
Confidence 678999999998764 445556666553 46999999999988764 4787643 2222111111111 579999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
|- |+|... .+..+++++ ++||++|..
T Consensus 262 id---~~g~~~-------------------------~~~~~~~~l----~~~G~iv~~ 287 (369)
T 1uuf_A 262 LN---TVAAPH-------------------------NLDDFTTLL----KRDGTMTLV 287 (369)
T ss_dssp EE---CCSSCC-------------------------CHHHHHTTE----EEEEEEEEC
T ss_pred EE---CCCCHH-------------------------HHHHHHHHh----ccCCEEEEe
Confidence 75 444320 155667776 999998753
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.044 Score=55.77 Aligned_cols=99 Identities=18% Similarity=0.221 Sum_probs=63.7
Q ss_pred cCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecC--CCCCccc---cCC
Q 010971 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD--GNELPKV---LGL 247 (496)
Q Consensus 174 L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D--~~~~~~~---~~~ 247 (496)
..+++|++||=++||+ |..++++|..++ ...|+++|.++.|++.+ +++|.+.+ +... ...+... ...
T Consensus 189 ~~~~~g~~VlV~GaG~vG~~a~q~a~~~G-a~~Vi~~~~~~~~~~~a----~~lGa~~v--i~~~~~~~~~~~~i~~~~~ 261 (378)
T 3uko_A 189 AKVEPGSNVAIFGLGTVGLAVAEGAKTAG-ASRIIGIDIDSKKYETA----KKFGVNEF--VNPKDHDKPIQEVIVDLTD 261 (378)
T ss_dssp TCCCTTCCEEEECCSHHHHHHHHHHHHHT-CSCEEEECSCTTHHHHH----HTTTCCEE--ECGGGCSSCHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHH----HHcCCcEE--EccccCchhHHHHHHHhcC
Confidence 4578999999998754 445555666553 24799999999998855 46888653 2222 1222111 112
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC-cEEEEE
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG-GYIVYS 311 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpG-G~LVYS 311 (496)
+.||+||- |+|.. ..+..+++++ ++| |++|..
T Consensus 262 gg~D~vid---~~g~~-------------------------~~~~~~~~~l----~~g~G~iv~~ 294 (378)
T 3uko_A 262 GGVDYSFE---CIGNV-------------------------SVMRAALECC----HKGWGTSVIV 294 (378)
T ss_dssp SCBSEEEE---CSCCH-------------------------HHHHHHHHTB----CTTTCEEEEC
T ss_pred CCCCEEEE---CCCCH-------------------------HHHHHHHHHh----hccCCEEEEE
Confidence 47999985 55431 2467788886 996 998764
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.057 Score=54.77 Aligned_cols=99 Identities=14% Similarity=0.119 Sum_probs=62.7
Q ss_pred cCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCC--CCCccc---cCC
Q 010971 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG--NELPKV---LGL 247 (496)
Q Consensus 174 L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~--~~~~~~---~~~ 247 (496)
..+++|++||-.+||+ |..++++|..++ ...|+++|.++.|++.+ +++|.+.+ +..+. ..+... ...
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a----~~lGa~~v--i~~~~~~~~~~~~i~~~t~ 259 (373)
T 1p0f_A 187 AKVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKA----IELGATEC--LNPKDYDKPIYEVICEKTN 259 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHH----HHTTCSEE--ECGGGCSSCHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHH----HHcCCcEE--EecccccchHHHHHHHHhC
Confidence 3578999999998654 444455565553 23799999999998765 45788643 22221 122111 112
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC-cEEEEE
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG-GYIVYS 311 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpG-G~LVYS 311 (496)
+.||+||- |+|.. ..+..+++++ ++| |++|..
T Consensus 260 gg~Dvvid---~~g~~-------------------------~~~~~~~~~l----~~~~G~iv~~ 292 (373)
T 1p0f_A 260 GGVDYAVE---CAGRI-------------------------ETMMNALQST----YCGSGVTVVL 292 (373)
T ss_dssp SCBSEEEE---CSCCH-------------------------HHHHHHHHTB----CTTTCEEEEC
T ss_pred CCCCEEEE---CCCCH-------------------------HHHHHHHHHH----hcCCCEEEEE
Confidence 47999985 44431 2367778886 999 998763
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.84 E-value=0.038 Score=56.03 Aligned_cols=99 Identities=18% Similarity=0.225 Sum_probs=64.0
Q ss_pred cCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---cCCCC
Q 010971 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LGLNT 249 (496)
Q Consensus 174 L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~~~~~ 249 (496)
..+++|++||-.+||+ |..++++|..++ ...|+++|.++.|++.++ .+|.+.+ ++.+...+... ...+.
T Consensus 186 ~~~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~v--i~~~~~~~~~~~~~~~~gg 258 (371)
T 1f8f_A 186 LKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAK----QLGATHV--INSKTQDPVAAIKEITDGG 258 (371)
T ss_dssp TCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHH----HHTCSEE--EETTTSCHHHHHHHHTTSC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHH----HcCCCEE--ecCCccCHHHHHHHhcCCC
Confidence 3578999999998765 555566666653 237999999999988764 5687543 33322222111 11237
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
||+||- |+|. ...+..+++++ ++||++|..
T Consensus 259 ~D~vid---~~g~-------------------------~~~~~~~~~~l----~~~G~iv~~ 288 (371)
T 1f8f_A 259 VNFALE---STGS-------------------------PEILKQGVDAL----GILGKIAVV 288 (371)
T ss_dssp EEEEEE---CSCC-------------------------HHHHHHHHHTE----EEEEEEEEC
T ss_pred CcEEEE---CCCC-------------------------HHHHHHHHHHH----hcCCEEEEe
Confidence 999975 3432 12367778887 999998764
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.1 Score=52.76 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=63.3
Q ss_pred cCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc----ccCCC
Q 010971 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK----VLGLN 248 (496)
Q Consensus 174 L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~----~~~~~ 248 (496)
..+++|++||-.++|+ |..++++|..++ ..|+++|.++.+++.+ +.+|.+.+. ..+...+.. .....
T Consensus 185 ~~~~~g~~VlV~G~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~----~~lGa~~vi--~~~~~~~~~~v~~~~~g~ 256 (363)
T 3uog_A 185 GHLRAGDRVVVQGTGGVALFGLQIAKATG--AEVIVTSSSREKLDRA----FALGADHGI--NRLEEDWVERVYALTGDR 256 (363)
T ss_dssp TCCCTTCEEEEESSBHHHHHHHHHHHHTT--CEEEEEESCHHHHHHH----HHHTCSEEE--ETTTSCHHHHHHHHHTTC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEecCchhHHHH----HHcCCCEEE--cCCcccHHHHHHHHhCCC
Confidence 3578999999998665 444555666553 4899999999998875 457886543 233222211 11234
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
.||+||- |+|.. .+..+++++ ++||++|...
T Consensus 257 g~D~vid---~~g~~--------------------------~~~~~~~~l----~~~G~iv~~G 287 (363)
T 3uog_A 257 GADHILE---IAGGA--------------------------GLGQSLKAV----APDGRISVIG 287 (363)
T ss_dssp CEEEEEE---ETTSS--------------------------CHHHHHHHE----EEEEEEEEEC
T ss_pred CceEEEE---CCChH--------------------------HHHHHHHHh----hcCCEEEEEe
Confidence 7999875 44421 156677776 9999988653
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.71 E-value=0.023 Score=56.23 Aligned_cols=103 Identities=14% Similarity=0.072 Sum_probs=56.0
Q ss_pred CeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEE
Q 010971 229 TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI 308 (496)
Q Consensus 229 ~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~L 308 (496)
..+.++++|...+...++.++||+|++|||+.........+.... ..............++..+.++| +|||.|
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~--~~~~~~~~l~~l~~~~~~~~rvL----k~~G~l 93 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLG--HIEDYEAFLDELDRVWREVFRLL----VPGGRL 93 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCH--HHHHHHHHHHHHHHHHHHHHHHE----EEEEEE
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhc--ccccHHHHHHHHHHHHHHHHHHc----CCCcEE
Confidence 357788999877543344578999999999965432222211100 01111222233456777777776 999999
Q ss_pred EEEeCCCCCcC----------CHHHHHHHHHhCCcEEee
Q 010971 309 VYSTCSIMVTE----------NEAVIDYALKKRDVKLVP 337 (496)
Q Consensus 309 VYSTCSi~~eE----------NE~vV~~~L~~~~~~lv~ 337 (496)
++........- .-..+..+++..++.+..
T Consensus 94 ~i~~~d~~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~ 132 (297)
T 2zig_A 94 VIVVGDVAVARRRFGRHLVFPLHADIQVRCRKLGFDNLN 132 (297)
T ss_dssp EEEECCEEEECC----EEEECHHHHHHHHHHHTTCEEEE
T ss_pred EEEECCCccccccCCcccccccHHHHHHHHHHcCCeeec
Confidence 87654221000 012344556667776654
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=94.64 E-value=0.073 Score=53.98 Aligned_cols=99 Identities=12% Similarity=0.131 Sum_probs=61.9
Q ss_pred cCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCC--CCCccc---cCC
Q 010971 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG--NELPKV---LGL 247 (496)
Q Consensus 174 L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~--~~~~~~---~~~ 247 (496)
..+++|++||-.+||+ |..++++|..++ ...|+++|.++.+++.+ +++|.+.+ +..+. ..+... ...
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~----~~lGa~~v--i~~~~~~~~~~~~~~~~~~ 259 (374)
T 2jhf_A 187 AKVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKA----KEVGATEC--VNPQDYKKPIQEVLTEMSN 259 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHH----HHTTCSEE--ECGGGCSSCHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHH----HHhCCceE--ecccccchhHHHHHHHHhC
Confidence 3578999999998654 444445555543 23799999999998765 45787643 22221 112111 112
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC-cEEEEE
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG-GYIVYS 311 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpG-G~LVYS 311 (496)
+.||+||- |+|.. ..+..+++++ ++| |++|..
T Consensus 260 ~g~D~vid---~~g~~-------------------------~~~~~~~~~l----~~~~G~iv~~ 292 (374)
T 2jhf_A 260 GGVDFSFE---VIGRL-------------------------DTMVTALSCC----QEAYGVSVIV 292 (374)
T ss_dssp SCBSEEEE---CSCCH-------------------------HHHHHHHHHB----CTTTCEEEEC
T ss_pred CCCcEEEE---CCCCH-------------------------HHHHHHHHHh----hcCCcEEEEe
Confidence 47999975 44431 2366777876 999 998764
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.054 Score=54.97 Aligned_cols=94 Identities=16% Similarity=0.180 Sum_probs=59.5
Q ss_pred CCCeEeecc-CCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---cCCCCcCE
Q 010971 178 EKERVIDMA-AAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LGLNTVDR 252 (496)
Q Consensus 178 ~g~~VLDmc-Agp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~~~~~fD~ 252 (496)
+|++||=.+ +|+ |..++++|..+. ...|+++|.++.+++.++ .+|.+.+. +... .+... .....||+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~-g~~Vi~~~~~~~~~~~~~----~lGad~vi--~~~~-~~~~~v~~~~~~g~Dv 242 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRT-DLTVIATASRPETQEWVK----SLGAHHVI--DHSK-PLAAEVAALGLGAPAF 242 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHC-CSEEEEECSSHHHHHHHH----HTTCSEEE--CTTS-CHHHHHHTTCSCCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHHH----HcCCCEEE--eCCC-CHHHHHHHhcCCCceE
Confidence 799998776 332 445555665543 368999999999988764 48876542 2221 22111 12357998
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
||- |+|.+ ..+..+++++ ++||++|..
T Consensus 243 vid---~~g~~-------------------------~~~~~~~~~l----~~~G~iv~~ 269 (363)
T 4dvj_A 243 VFS---TTHTD-------------------------KHAAEIADLI----APQGRFCLI 269 (363)
T ss_dssp EEE---CSCHH-------------------------HHHHHHHHHS----CTTCEEEEC
T ss_pred EEE---CCCch-------------------------hhHHHHHHHh----cCCCEEEEE
Confidence 875 54431 2467777876 999999864
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.061 Score=54.60 Aligned_cols=100 Identities=19% Similarity=0.206 Sum_probs=62.5
Q ss_pred cCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCC--CCCcccc---CC
Q 010971 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG--NELPKVL---GL 247 (496)
Q Consensus 174 L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~--~~~~~~~---~~ 247 (496)
..+++|++||-.+||+ |..++++|..++ ...|+++|.++.+++.+ +.+|.+.+ +..+. ..+.... ..
T Consensus 191 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a----~~lGa~~v--i~~~~~~~~~~~~v~~~~~ 263 (376)
T 1e3i_A 191 AKVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKA----KALGATDC--LNPRELDKPVQDVITELTA 263 (376)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHH----HHTTCSEE--ECGGGCSSCHHHHHHHHHT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHH----HHhCCcEE--EccccccchHHHHHHHHhC
Confidence 3578999999998654 344445555543 23799999999998765 45787643 22221 1121111 11
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC-cEEEEEe
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG-GYIVYST 312 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpG-G~LVYST 312 (496)
+.||+||- |+|.. ..+..+++++ ++| |++|...
T Consensus 264 ~g~Dvvid---~~G~~-------------------------~~~~~~~~~l----~~~~G~iv~~G 297 (376)
T 1e3i_A 264 GGVDYSLD---CAGTA-------------------------QTLKAAVDCT----VLGWGSCTVVG 297 (376)
T ss_dssp SCBSEEEE---SSCCH-------------------------HHHHHHHHTB----CTTTCEEEECC
T ss_pred CCccEEEE---CCCCH-------------------------HHHHHHHHHh----hcCCCEEEEEC
Confidence 37999975 44431 2367778886 999 9998643
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.07 Score=54.01 Aligned_cols=99 Identities=15% Similarity=0.193 Sum_probs=61.9
Q ss_pred cCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCC--CCCccc---cCC
Q 010971 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG--NELPKV---LGL 247 (496)
Q Consensus 174 L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~--~~~~~~---~~~ 247 (496)
..+++|++||-.+||+ |..++++|..++ ...|+++|.++.+++.++ .+|...+ +.... ..+... ...
T Consensus 186 ~~~~~g~~VlV~GaG~vG~~avqla~~~G-a~~Vi~~~~~~~~~~~~~----~lGa~~v--i~~~~~~~~~~~~v~~~~~ 258 (373)
T 2fzw_A 186 AKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAK----EFGATEC--INPQDFSKPIQEVLIEMTD 258 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHH----HHTCSEE--ECGGGCSSCHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HcCCceE--eccccccccHHHHHHHHhC
Confidence 3578999999998654 344445555553 237999999999988664 5787653 22211 112111 112
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC-cEEEEE
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG-GYIVYS 311 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpG-G~LVYS 311 (496)
+.||+||- |+|.. ..+..+++++ ++| |++|..
T Consensus 259 ~g~D~vid---~~g~~-------------------------~~~~~~~~~l----~~~~G~iv~~ 291 (373)
T 2fzw_A 259 GGVDYSFE---CIGNV-------------------------KVMRAALEAC----HKGWGVSVVV 291 (373)
T ss_dssp SCBSEEEE---CSCCH-------------------------HHHHHHHHTB----CTTTCEEEEC
T ss_pred CCCCEEEE---CCCcH-------------------------HHHHHHHHhh----ccCCcEEEEE
Confidence 47999975 44431 2366778876 999 998763
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.24 Score=49.33 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=63.1
Q ss_pred cCCCCCCeEeeccCCCchH-HHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc----cCCC
Q 010971 174 LAPQEKERVIDMAAAPGGK-TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV----LGLN 248 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgK-T~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~----~~~~ 248 (496)
..+++|++||=.+||+.|. ++++|..++ ...++++|.++.|++.+ +++|...+ ++..-...... ....
T Consensus 156 ~~~~~g~~VlV~GaG~vG~~aiq~ak~~G-~~~vi~~~~~~~k~~~a----~~lGa~~~--i~~~~~~~~~~~~~~~~~~ 228 (346)
T 4a2c_A 156 AQGCENKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDISSEKLALA----KSFGAMQT--FNSSEMSAPQMQSVLRELR 228 (346)
T ss_dssp TTCCTTSEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHH----HHTTCSEE--EETTTSCHHHHHHHHGGGC
T ss_pred hccCCCCEEEEECCCCcchHHHHHHHHcC-CcEEEEEechHHHHHHH----HHcCCeEE--EeCCCCCHHHHHHhhcccC
Confidence 3578999999998876443 344555543 35789999999998765 56887653 33332222111 1225
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.+|.|+- |+|.+ ..+..+++++ ++||+++..
T Consensus 229 g~d~v~d---~~G~~-------------------------~~~~~~~~~l----~~~G~~v~~ 259 (346)
T 4a2c_A 229 FNQLILE---TAGVP-------------------------QTVELAVEIA----GPHAQLALV 259 (346)
T ss_dssp SSEEEEE---CSCSH-------------------------HHHHHHHHHC----CTTCEEEEC
T ss_pred Ccccccc---ccccc-------------------------chhhhhhhee----cCCeEEEEE
Confidence 6888775 44432 2366777876 999998763
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.059 Score=60.43 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=36.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC----cEEEEEeCCHHHHHHHHHHH
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT----GLIYANEMKASRLKSLTANL 223 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~----g~V~A~D~s~~rl~~l~~nl 223 (496)
...+|||++||.||.++-+.+..... -.++|+|+++..++..+.|.
T Consensus 211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh 260 (784)
T 4ft4_B 211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260 (784)
T ss_dssp EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence 34689999999999998877652110 26899999999999998884
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.034 Score=57.99 Aligned_cols=46 Identities=13% Similarity=0.077 Sum_probs=36.6
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCcE----EEEEeCCHHHHHHHHHHHHH
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTGL----IYANEMKASRLKSLTANLHR 225 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g~----V~A~D~s~~rl~~l~~nl~r 225 (496)
-+|||+|||.||.+..+-++-.+-.. |.|+|+++..+.....|...
T Consensus 11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~ 60 (403)
T 4dkj_A 11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK 60 (403)
T ss_dssp EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence 58999999999999887665211123 89999999999999988753
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.41 E-value=0.074 Score=53.94 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=62.0
Q ss_pred cCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCC--CCCcccc---CC
Q 010971 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG--NELPKVL---GL 247 (496)
Q Consensus 174 L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~--~~~~~~~---~~ 247 (496)
..+++|++||-.+||+ |..++++|..++ ...|+++|.++.+++.+ +++|.+.+ +..+. ..+.... ..
T Consensus 188 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~----~~lGa~~v--i~~~~~~~~~~~~~~~~~~ 260 (374)
T 1cdo_A 188 AKVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKA----KVFGATDF--VNPNDHSEPISQVLSKMTN 260 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHH----HHTTCCEE--ECGGGCSSCHHHHHHHHHT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHH----HHhCCceE--EeccccchhHHHHHHHHhC
Confidence 3578999999998654 344455555543 23799999999998865 45787643 22221 1221111 11
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC-cEEEEE
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG-GYIVYS 311 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpG-G~LVYS 311 (496)
+.||+||- |+|.+ ..+..+++++ ++| |++|..
T Consensus 261 ~g~D~vid---~~g~~-------------------------~~~~~~~~~l----~~~~G~iv~~ 293 (374)
T 1cdo_A 261 GGVDFSLE---CVGNV-------------------------GVMRNALESC----LKGWGVSVLV 293 (374)
T ss_dssp SCBSEEEE---CSCCH-------------------------HHHHHHHHTB----CTTTCEEEEC
T ss_pred CCCCEEEE---CCCCH-------------------------HHHHHHHHHh----hcCCcEEEEE
Confidence 47999985 44431 2367778886 999 998864
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.21 Score=50.29 Aligned_cols=101 Identities=22% Similarity=0.189 Sum_probs=61.8
Q ss_pred cCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCC---CCc----ccc
Q 010971 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN---ELP----KVL 245 (496)
Q Consensus 174 L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~---~~~----~~~ 245 (496)
..+++|++||=.+||+ |..++++|..++ ...|++.|.++.+++.+++. ...+.....|.. .+. ...
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~l-----~~~~~~~~~~~~~~~~~~~~v~~~t 248 (363)
T 3m6i_A 175 AGVRLGDPVLICGAGPIGLITMLCAKAAG-ACPLVITDIDEGRLKFAKEI-----CPEVVTHKVERLSAEESAKKIVESF 248 (363)
T ss_dssp HTCCTTCCEEEECCSHHHHHHHHHHHHTT-CCSEEEEESCHHHHHHHHHH-----CTTCEEEECCSCCHHHHHHHHHHHT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHh-----chhcccccccccchHHHHHHHHHHh
Confidence 4678999999988754 444455555543 23599999999999887653 222222222211 111 111
Q ss_pred CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 246 ~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
....||+||- |+|.. ..+..+++++ ++||++|...
T Consensus 249 ~g~g~Dvvid---~~g~~-------------------------~~~~~~~~~l----~~~G~iv~~G 283 (363)
T 3m6i_A 249 GGIEPAVALE---CTGVE-------------------------SSIAAAIWAV----KFGGKVFVIG 283 (363)
T ss_dssp SSCCCSEEEE---CSCCH-------------------------HHHHHHHHHS----CTTCEEEECC
T ss_pred CCCCCCEEEE---CCCCh-------------------------HHHHHHHHHh----cCCCEEEEEc
Confidence 2357999985 44431 1366777876 9999998643
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.11 Score=60.11 Aligned_cols=83 Identities=22% Similarity=0.253 Sum_probs=56.8
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC-------------cccc
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-------------PKVL 245 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~-------------~~~~ 245 (496)
.-++||+|||.||.++-+.+. +-.-.|+|+|+++..++..+.|.. +..++..|...+ ...+
T Consensus 540 ~l~~iDLFaG~GGlslGl~~A-G~~~vv~avEid~~A~~ty~~N~p-----~~~~~~~DI~~l~~~~~~~di~~~~~~~l 613 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQA-GISDTLWAIEMWDPAAQAFRLNNP-----GSTVFTEDCNILLKLVMAGETTNSRGQRL 613 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHH-TSEEEEEEECSSHHHHHHHHHHCT-----TSEEECSCHHHHHHHHHHTCSBCTTCCBC
T ss_pred CCeEEEeccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHHHhCC-----CCccccccHHHHhhhccchhhhhhhhhhc
Confidence 458999999999999887664 111268899999999999888752 333444443211 0011
Q ss_pred -CCCCcCEEEECCCCCCCCcccC
Q 010971 246 -GLNTVDRVLLDAPCSGTGVISK 267 (496)
Q Consensus 246 -~~~~fD~VLlDaPCSg~G~i~r 267 (496)
..+.+|+|+.-|||-+.....+
T Consensus 614 p~~~~vDll~GGpPCQ~FS~ag~ 636 (1002)
T 3swr_A 614 PQKGDVEMLCGGPPCQGFSGMNR 636 (1002)
T ss_dssp CCTTTCSEEEECCCCTTCCSSSC
T ss_pred ccCCCeeEEEEcCCCcchhhhCC
Confidence 1257999999999988765543
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=94.02 E-value=0.26 Score=47.34 Aligned_cols=84 Identities=14% Similarity=0.123 Sum_probs=60.8
Q ss_pred CCCeEeeccCCCc-hHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAPG-GKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpG-gKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|.++|=.||+.+ |.+..+|..+- ....|+.+|.+...++.+.+.++..+-.++.++..|..+..... ..
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDV 84 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4778888887653 67777776543 33589999999999999999998888767778888987642211 12
Q ss_pred CCcCEEEECCCCCC
Q 010971 248 NTVDRVLLDAPCSG 261 (496)
Q Consensus 248 ~~fD~VLlDaPCSg 261 (496)
+..|.++.++-..+
T Consensus 85 G~iD~lvnnAg~~~ 98 (256)
T 4fs3_A 85 GNIDGVYHSIAFAN 98 (256)
T ss_dssp CCCSEEEECCCCCC
T ss_pred CCCCEEEecccccc
Confidence 68999988775443
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=93.84 E-value=0.065 Score=54.12 Aligned_cols=73 Identities=14% Similarity=0.098 Sum_probs=46.8
Q ss_pred cCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCC-CCccccCCCCcC
Q 010971 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN-ELPKVLGLNTVD 251 (496)
Q Consensus 174 L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~-~~~~~~~~~~fD 251 (496)
+.+++|++||-.+||+ |..++++|..++ ..|+++|.++.+++.++ .+|...+ +..+.. .+..... +.||
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~G--a~Vi~~~~~~~~~~~~~----~lGa~~v--~~~~~~~~~~~~~~-~~~D 245 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAM----KMGADHY--IATLEEGDWGEKYF-DTFD 245 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHH----HHTCSEE--EEGGGTSCHHHHSC-SCEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHH----HcCCCEE--EcCcCchHHHHHhh-cCCC
Confidence 3678999999999844 444455555553 37999999999887664 4787654 232212 2222222 4799
Q ss_pred EEEE
Q 010971 252 RVLL 255 (496)
Q Consensus 252 ~VLl 255 (496)
+||-
T Consensus 246 ~vid 249 (360)
T 1piw_A 246 LIVV 249 (360)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.63 Score=44.27 Aligned_cols=130 Identities=13% Similarity=0.054 Sum_probs=75.6
Q ss_pred CCCeEeeccCCCc-hHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAPG-GKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpG-gKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|.+||=.|++.| |.+.+++..+. ....|+.++.+....+.+.+.....+-.++.++..|..+..... ..
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQV 85 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 4667887777643 46777666543 33488899988777777777777776657888888988753221 11
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHH----HHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY----LQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~----lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
+.+|.|+..|-....+.. +......+.++...... -...++..++.. ++++|.||+.+..
T Consensus 86 g~id~li~~Ag~~~~~~~---~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~g~iv~isS~ 149 (266)
T 3oig_A 86 GVIHGIAHCIAFANKEEL---VGEYLNTNRDGFLLAHNISSYSLTAVVKAARPM----MTEGGSIVTLTYL 149 (266)
T ss_dssp SCCCEEEECCCCCCGGGG---SSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG----CTTCEEEEEEECG
T ss_pred CCeeEEEEcccccccccc---ccchhhccHHHHHHHHHHhHHHHHHHHHHHHhh----cCCCceEEEEecc
Confidence 478999987643331100 01112234444333222 223344444444 4778998886543
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.76 E-value=0.11 Score=52.14 Aligned_cols=96 Identities=13% Similarity=0.017 Sum_probs=55.6
Q ss_pred eEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEE
Q 010971 230 NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309 (496)
Q Consensus 230 nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LV 309 (496)
...++++|+......++.++||.|++|||+...... .+ ..............+|..+.++| +|||.|+
T Consensus 14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~------~y--~~~~~~~~~~~l~~~l~~~~rvL----k~~G~i~ 81 (323)
T 1boo_A 14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKK------EY--GNLEQHEYVDWFLSFAKVVNKKL----KPDGSFV 81 (323)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSC------SS--CSCHHHHHHHHHHHHHHHHHHHE----EEEEEEE
T ss_pred CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCccc------cc--CCcCHHHHHHHHHHHHHHHHHHC----cCCcEEE
Confidence 467888998764334455789999999998543110 01 11122333344456677777765 9999998
Q ss_pred EEeCCCCCcC-------CHHHHHHHHHhCCcEEee
Q 010971 310 YSTCSIMVTE-------NEAVIDYALKKRDVKLVP 337 (496)
Q Consensus 310 YSTCSi~~eE-------NE~vV~~~L~~~~~~lv~ 337 (496)
........+. +-..+-.+++..++.+..
T Consensus 82 i~~~d~~~~g~~~~~~~~~~~i~~~~~~~Gf~~~~ 116 (323)
T 1boo_A 82 VDFGGAYMKGVPARSIYNFRVLIRMIDEVGFFLAE 116 (323)
T ss_dssp EEECCCEETTEEEECCHHHHHHHHHHHTTCCEEEE
T ss_pred EEECCEecCCCcccccchHHHHHHHHHhCCCEEEE
Confidence 7655331111 122333445667777664
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.086 Score=51.71 Aligned_cols=129 Identities=15% Similarity=0.114 Sum_probs=79.3
Q ss_pred CeEeeccCCCchHHHHHHHHc------CCCcEEEEEe-----CCH----------------------HHHHHH---HHHH
Q 010971 180 ERVIDMAAAPGGKTTYIAALM------KNTGLIYANE-----MKA----------------------SRLKSL---TANL 223 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~------~~~g~V~A~D-----~s~----------------------~rl~~l---~~nl 223 (496)
..|+++|..-|+.+..++++. .....|+++| ... ..+..+ .+|.
T Consensus 71 G~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~ 150 (257)
T 3tos_A 71 GVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHECS 150 (257)
T ss_dssp SEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHTT
T ss_pred CeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhhh
Confidence 489999999999999887652 2347899999 221 112222 2233
Q ss_pred HHcCC--CeEEEEecCCCCC-ccc---cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHh
Q 010971 224 HRMGV--TNTIVCNYDGNEL-PKV---LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDM 297 (496)
Q Consensus 224 ~r~g~--~nv~v~~~D~~~~-~~~---~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~ 297 (496)
.++|. .+|.++.+++.+. +.. .+...||.|.+|+-. -.-.+..|..++..
T Consensus 151 ~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~------------------------Y~~t~~~le~~~p~ 206 (257)
T 3tos_A 151 DFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL------------------------YEPTKAVLEAIRPY 206 (257)
T ss_dssp STTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC------------------------HHHHHHHHHHHGGG
T ss_pred hhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc------------------------cchHHHHHHHHHHH
Confidence 45775 5799999998653 332 123479999999840 00112334555555
Q ss_pred hhhcCCCCcEEEEEeCCC--CCcCCHHHHHHHHHhCCcEEee
Q 010971 298 VDANSKSGGYIVYSTCSI--MVTENEAVIDYALKKRDVKLVP 337 (496)
Q Consensus 298 l~~~lkpGG~LVYSTCSi--~~eENE~vV~~~L~~~~~~lv~ 337 (496)
| +|||+||+-.... .+.+.+ -++.|+..+++++..
T Consensus 207 l----~~GGvIv~DD~~~~~w~G~~~-A~~ef~~~~~~~i~~ 243 (257)
T 3tos_A 207 L----TKGSIVAFDELDNPKWPGENI-AMRKVLGLDHAPLRL 243 (257)
T ss_dssp E----EEEEEEEESSTTCTTCTHHHH-HHHHHTCTTSSCCEE
T ss_pred h----CCCcEEEEcCCCCCCChHHHH-HHHHHHhhCCCeEEE
Confidence 4 9999999988642 333333 346666666554443
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.46 Score=48.70 Aligned_cols=74 Identities=11% Similarity=0.077 Sum_probs=46.5
Q ss_pred CCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc----ccCCCC
Q 010971 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK----VLGLNT 249 (496)
Q Consensus 175 ~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~----~~~~~~ 249 (496)
.+++|++||=.+||+ |..++++|..++ ...|+++|.++.|++.+ +++|.+.+ ++.+...+.. ......
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~----~~lGa~~v--i~~~~~~~~~~i~~~t~g~g 282 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAG-ASKVILSEPSEVRRNLA----KELGADHV--IDPTKENFVEAVLDYTNGLG 282 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHH----HHHTCSEE--ECTTTSCHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHH----HHcCCCEE--EcCCCCCHHHHHHHHhCCCC
Confidence 478999999988743 334445555542 34899999999998866 45787643 3333222211 112247
Q ss_pred cCEEEE
Q 010971 250 VDRVLL 255 (496)
Q Consensus 250 fD~VLl 255 (496)
||+||-
T Consensus 283 ~D~vid 288 (404)
T 3ip1_A 283 AKLFLE 288 (404)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 999985
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.58 E-value=0.13 Score=52.37 Aligned_cols=99 Identities=19% Similarity=0.218 Sum_probs=61.0
Q ss_pred cC-CCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecC---CCCC----ccc
Q 010971 174 LA-PQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD---GNEL----PKV 244 (496)
Q Consensus 174 L~-~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D---~~~~----~~~ 244 (496)
+. +++|++||-.++|+ |..++++|..++ ...|++.|.++.+++.++ .+|.+.+ +..+ ...+ ...
T Consensus 190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~----~lGa~~v--i~~~~~~~~~~~~~v~~~ 262 (380)
T 1vj0_A 190 YPESFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAE----EIGADLT--LNRRETSVEERRKAIMDI 262 (380)
T ss_dssp CSSCCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHH----HTTCSEE--EETTTSCHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECcCHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHH----HcCCcEE--EeccccCcchHHHHHHHH
Confidence 35 78999999999543 333444554442 138999999999988764 5787643 2322 1111 111
Q ss_pred cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 245 ~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.....||+||- |+|.+ ..+..+++++ ++||++|..
T Consensus 263 ~~g~g~Dvvid---~~g~~-------------------------~~~~~~~~~l----~~~G~iv~~ 297 (380)
T 1vj0_A 263 THGRGADFILE---ATGDS-------------------------RALLEGSELL----RRGGFYSVA 297 (380)
T ss_dssp TTTSCEEEEEE---CSSCT-------------------------THHHHHHHHE----EEEEEEEEC
T ss_pred hCCCCCcEEEE---CCCCH-------------------------HHHHHHHHHH----hcCCEEEEE
Confidence 12236999975 44432 1366777876 999998753
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=93.33 E-value=0.13 Score=46.98 Aligned_cols=98 Identities=20% Similarity=0.243 Sum_probs=57.4
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc----cccCCC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGLN 248 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~----~~~~~~ 248 (496)
+.+++|++||..||+ |+.+..+++++.. ...|+++|.++.+++.++ .+|...+ +..+-..+. ......
T Consensus 34 ~~~~~g~~vlV~Ga~-ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~----~~g~~~~--~d~~~~~~~~~~~~~~~~~ 106 (198)
T 1pqw_A 34 GRLSPGERVLIHSAT-GGVGMAAVSIAKMIGARIYTTAGSDAKREMLS----RLGVEYV--GDSRSVDFADEILELTDGY 106 (198)
T ss_dssp SCCCTTCEEEETTTT-SHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH----TTCCSEE--EETTCSTHHHHHHHHTTTC
T ss_pred hCCCCCCEEEEeeCC-ChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----HcCCCEE--eeCCcHHHHHHHHHHhCCC
Confidence 467899999998853 4444444443321 248999999998876653 4676432 222211111 111124
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.+|.|+. |.|. ..+..+++++ ++||++|..
T Consensus 107 ~~D~vi~---~~g~--------------------------~~~~~~~~~l----~~~G~~v~~ 136 (198)
T 1pqw_A 107 GVDVVLN---SLAG--------------------------EAIQRGVQIL----APGGRFIEL 136 (198)
T ss_dssp CEEEEEE---CCCT--------------------------HHHHHHHHTE----EEEEEEEEC
T ss_pred CCeEEEE---CCch--------------------------HHHHHHHHHh----ccCCEEEEE
Confidence 6999985 3331 0255667776 999998864
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=93.32 E-value=0.074 Score=54.64 Aligned_cols=77 Identities=10% Similarity=0.134 Sum_probs=49.3
Q ss_pred CCeEeeccCCCchHHHHHHHH---------------cCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCC-
Q 010971 179 KERVIDMAAAPGGKTTYIAAL---------------MKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNEL- 241 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l---------------~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~- 241 (496)
.-+|+|+||++|..|+.+.+. -.+.-.|+.+|+-..-...+-..+..+.- .+..++.+.+..|
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence 468999999999999764443 12345789999887777777666643211 0223444443332
Q ss_pred ccccCCCCcCEEEE
Q 010971 242 PKVLGLNTVDRVLL 255 (496)
Q Consensus 242 ~~~~~~~~fD~VLl 255 (496)
...++.++||.|+.
T Consensus 132 ~rlfp~~S~d~v~S 145 (359)
T 1m6e_X 132 GRLFPRNTLHFIHS 145 (359)
T ss_dssp SCCSCTTCBSCEEE
T ss_pred hccCCCCceEEEEe
Confidence 44455689999975
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=93.06 E-value=0.087 Score=52.89 Aligned_cols=92 Identities=22% Similarity=0.199 Sum_probs=56.5
Q ss_pred CCCeEeecc-CC-CchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---cCCCCcCE
Q 010971 178 EKERVIDMA-AA-PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LGLNTVDR 252 (496)
Q Consensus 178 ~g~~VLDmc-Ag-pGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~~~~~fD~ 252 (496)
+|++||=.+ +| .|..++++|..++ ..|+++|.++.+++.+++ +|.+.+ +..+. .+... .....||+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~----lGa~~v--i~~~~-~~~~~~~~~~~~g~Dv 220 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYG--LRVITTASRNETIEWTKK----MGADIV--LNHKE-SLLNQFKTQGIELVDY 220 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEECCSHHHHHHHHH----HTCSEE--ECTTS-CHHHHHHHHTCCCEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCCcEE--EECCc-cHHHHHHHhCCCCccE
Confidence 899999763 22 2444445555443 489999999999887654 687643 22221 22111 12357998
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVY 310 (496)
||- |+|.. ..+..+++++ ++||++|.
T Consensus 221 v~d---~~g~~-------------------------~~~~~~~~~l----~~~G~iv~ 246 (346)
T 3fbg_A 221 VFC---TFNTD-------------------------MYYDDMIQLV----KPRGHIAT 246 (346)
T ss_dssp EEE---SSCHH-------------------------HHHHHHHHHE----EEEEEEEE
T ss_pred EEE---CCCch-------------------------HHHHHHHHHh----ccCCEEEE
Confidence 875 44421 2356777876 99999974
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=93.02 E-value=0.23 Score=49.39 Aligned_cols=98 Identities=17% Similarity=0.131 Sum_probs=62.5
Q ss_pred CCCCCCeEeeccCCCchH-HHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc----cccCCCC
Q 010971 175 APQEKERVIDMAAAPGGK-TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGLNT 249 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgK-T~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~----~~~~~~~ 249 (496)
.+++|++||=.+||++|- ++.++..+. ...|+++|.++.|++. ++.+|...+. ++...++. .......
T Consensus 160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~~r~~~----~~~~Ga~~~i--~~~~~~~~~~v~~~t~g~g 232 (348)
T 4eez_A 160 GVKPGDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQDKLNL----AKKIGADVTI--NSGDVNPVDEIKKITGGLG 232 (348)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCHHHHHH----HHHTTCSEEE--EC-CCCHHHHHHHHTTSSC
T ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcHHHhhh----hhhcCCeEEE--eCCCCCHHHHhhhhcCCCC
Confidence 578999999999987654 334444443 3689999999998764 4567876532 22222221 1122346
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
+|.++.++ +.+ ..+..++.++ ++||+++..
T Consensus 233 ~d~~~~~~---~~~-------------------------~~~~~~~~~l----~~~G~~v~~ 262 (348)
T 4eez_A 233 VQSAIVCA---VAR-------------------------IAFEQAVASL----KPMGKMVAV 262 (348)
T ss_dssp EEEEEECC---SCH-------------------------HHHHHHHHTE----EEEEEEEEC
T ss_pred ceEEEEec---cCc-------------------------chhheeheee----cCCceEEEE
Confidence 88888743 221 2366777876 999998764
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=92.98 E-value=0.1 Score=52.32 Aligned_cols=99 Identities=12% Similarity=-0.001 Sum_probs=61.5
Q ss_pred CCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCC-CCC-ccccCCCCcC
Q 010971 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NEL-PKVLGLNTVD 251 (496)
Q Consensus 175 ~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~-~~~-~~~~~~~~fD 251 (496)
.+ +|++||-.+||+ |..++++|..+.+...|+++|.++.+++.++ .+|.+.+. ..+. ..+ ........||
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~----~lGa~~vi--~~~~~~~~~~~~~~g~g~D 240 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFAL----ELGADYVS--EMKDAESLINKLTDGLGAS 240 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHH----HHTCSEEE--CHHHHHHHHHHHHTTCCEE
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHH----HhCCCEEe--ccccchHHHHHhhcCCCcc
Confidence 67 999999999854 4445566665510147999999999987664 47876532 2111 111 1111123799
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+||- |+|.. ..+..+++++ ++||++|...
T Consensus 241 ~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~iv~~g 269 (344)
T 2h6e_A 241 IAID---LVGTE-------------------------ETTYNLGKLL----AQEGAIILVG 269 (344)
T ss_dssp EEEE---SSCCH-------------------------HHHHHHHHHE----EEEEEEEECC
T ss_pred EEEE---CCCCh-------------------------HHHHHHHHHh----hcCCEEEEeC
Confidence 9985 44321 2366777876 9999988643
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=0.26 Score=58.52 Aligned_cols=83 Identities=23% Similarity=0.263 Sum_probs=56.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC-------------cc
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-------------PK 243 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~-------------~~ 243 (496)
...+|||+|||.||.++-+.+. +- -.|+|+|+++..++..+.|.. +..+...|...+ ..
T Consensus 850 ~~l~viDLFsG~GGlslGfe~A--G~~~vv~avEid~~A~~ty~~N~p-----~~~~~~~DI~~l~~~~~~gdi~~~~~~ 922 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQA--GISETLWAIEMWDPAAQAFRLNNP-----GTTVFTEDCNVLLKLVMAGEVTNSLGQ 922 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHT--TSEEEEEEECCSHHHHHHHHHHCT-----TSEEECSCHHHHHHHHTTTCSBCSSCC
T ss_pred CCceEEecccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhCC-----CCcEeeccHHHHhHhhhccchhhhhhh
Confidence 3568999999999999877653 21 258899999999999888842 223334432211 01
Q ss_pred cc-CCCCcCEEEECCCCCCCCcccC
Q 010971 244 VL-GLNTVDRVLLDAPCSGTGVISK 267 (496)
Q Consensus 244 ~~-~~~~fD~VLlDaPCSg~G~i~r 267 (496)
.+ ..+.+|+|+--|||-+.....+
T Consensus 923 ~lp~~~~vDvl~GGpPCQ~FS~agr 947 (1330)
T 3av4_A 923 RLPQKGDVEMLCGGPPCQGFSGMNR 947 (1330)
T ss_dssp BCCCTTTCSEEEECCCCTTTCSSSC
T ss_pred hccccCccceEEecCCCcccccccc
Confidence 11 1246999999999988765543
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=92.88 E-value=0.35 Score=48.29 Aligned_cols=97 Identities=15% Similarity=0.155 Sum_probs=61.0
Q ss_pred CCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccC--CCCcC
Q 010971 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG--LNTVD 251 (496)
Q Consensus 175 ~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~--~~~fD 251 (496)
.+++|++||-.+||+ |..+++++..++ ..|+++|.++.+++.++ .+|...+ +......+..... ...||
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~----~lGa~~~--~d~~~~~~~~~~~~~~~~~d 232 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDEKLELAK----ELGADLV--VNPLKEDAAKFMKEKVGGVH 232 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHH----HTTCSEE--ECTTTSCHHHHHHHHHSSEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH----HCCCCEE--ecCCCccHHHHHHHHhCCCC
Confidence 678999999999854 444455555543 48999999999988664 4787543 2222112211110 04699
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
+|+- |+|.. ..+..+++++ ++||++|..
T Consensus 233 ~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 260 (339)
T 1rjw_A 233 AAVV---TAVSK-------------------------PAFQSAYNSI----RRGGACVLV 260 (339)
T ss_dssp EEEE---SSCCH-------------------------HHHHHHHHHE----EEEEEEEEC
T ss_pred EEEE---CCCCH-------------------------HHHHHHHHHh----hcCCEEEEe
Confidence 9875 44421 1356777776 999998753
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=92.74 E-value=0.084 Score=52.12 Aligned_cols=67 Identities=6% Similarity=-0.002 Sum_probs=45.5
Q ss_pred cCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE
Q 010971 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 174 L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
..+++|++||=.+||+ |..++++|..++ ..|++++ ++.+++.++ ++|.+.+. + | ... . ...||+
T Consensus 138 ~~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~-~~~~~~~~~----~lGa~~v~--~-d---~~~-v-~~g~Dv 202 (315)
T 3goh_A 138 IPLTKQREVLIVGFGAVNNLLTQMLNNAG--YVVDLVS-ASLSQALAA----KRGVRHLY--R-E---PSQ-V-TQKYFA 202 (315)
T ss_dssp SCCCSCCEEEEECCSHHHHHHHHHHHHHT--CEEEEEC-SSCCHHHHH----HHTEEEEE--S-S---GGG-C-CSCEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEE-ChhhHHHHH----HcCCCEEE--c-C---HHH-h-CCCccE
Confidence 3578999999998853 455556666653 3899999 888887764 47875443 3 4 222 2 468998
Q ss_pred EEE
Q 010971 253 VLL 255 (496)
Q Consensus 253 VLl 255 (496)
||-
T Consensus 203 v~d 205 (315)
T 3goh_A 203 IFD 205 (315)
T ss_dssp EEC
T ss_pred EEE
Confidence 863
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=1.7 Score=42.39 Aligned_cols=145 Identities=12% Similarity=0.048 Sum_probs=74.7
Q ss_pred cEEEeCCcchhHHHhcCCCCCCeEeeccCCCc-hHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec
Q 010971 159 FYMLQSASSFLPVMALAPQEKERVIDMAAAPG-GKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236 (496)
Q Consensus 159 ~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpG-gKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~ 236 (496)
....|.+.++-..+ ....|.+||=.|++.| |.+.+++..+- ....|+.++.+....+.+.+.....+ ++.++..
T Consensus 13 ~~~~~gp~~~~~~~--~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~ 88 (293)
T 3grk_A 13 EAQTQGPGSMTAQS--GLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG--AFVAGHC 88 (293)
T ss_dssp ----------------CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT--CEEEEEC
T ss_pred CccccCCCCCCccc--ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CceEEEC
Confidence 44556666654332 2235788888887754 57777776543 33478999999766666666666555 4677888
Q ss_pred CCCCCcccc--------CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCC
Q 010971 237 DGNELPKVL--------GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKS 304 (496)
Q Consensus 237 D~~~~~~~~--------~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~----~lQ~~LL~~A~~~l~~~lkp 304 (496)
|..+..... ..+..|.++..|--+..+.+ ..+ ....+.++..... .-...++..++..+ +.
T Consensus 89 Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~-~~~--~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m----~~ 161 (293)
T 3grk_A 89 DVADAASIDAVFETLEKKWGKLDFLVHAIGFSDKDEL-TGR--YIDTSEANFTNTMLISVYSLTAVSRRAEKLM----AD 161 (293)
T ss_dssp CTTCHHHHHHHHHHHHHHTSCCSEEEECCCCCCHHHH-TSC--GGGCCHHHHHHHHHHHTHHHHHHHHHHHHHT----TT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcccc-ccc--ccccCHHHHHHHHHHHHHHHHHHHHHHHHhc----cC
Confidence 987642211 12579999986632210000 011 1223444433222 22334555566554 67
Q ss_pred CcEEEEEeCC
Q 010971 305 GGYIVYSTCS 314 (496)
Q Consensus 305 GG~LVYSTCS 314 (496)
+|.||+.+..
T Consensus 162 ~g~Iv~isS~ 171 (293)
T 3grk_A 162 GGSILTLTYY 171 (293)
T ss_dssp CEEEEEEECG
T ss_pred CCEEEEEeeh
Confidence 8998886543
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=92.65 E-value=0.45 Score=46.54 Aligned_cols=140 Identities=15% Similarity=0.098 Sum_probs=76.5
Q ss_pred EeCCcchhHHHhcCCCCCCeEeeccCCC-chHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCC
Q 010971 162 LQSASSFLPVMALAPQEKERVIDMAAAP-GGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (496)
Q Consensus 162 iQd~sS~l~v~~L~~~~g~~VLDmcAgp-GgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~ 239 (496)
.|.++||...+.| .|.+||=.|++. +|.+.+++..+- ....|+.+|.+....+.+.......|. +.++..|..
T Consensus 16 ~~gp~sm~~~~~l---~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~Dv~ 90 (296)
T 3k31_A 16 TQGPGSMRTGMLM---EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGV--KLTVPCDVS 90 (296)
T ss_dssp -----CCCCCCTT---TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTC--CEEEECCTT
T ss_pred ccCCccccchhcc---CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC--eEEEEcCCC
Confidence 4566665443322 477888888764 477777776553 335899999998766766666666653 467778887
Q ss_pred CCcccc--------CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHH----HHHHHHHHHHHhhhhcCCCCcE
Q 010971 240 ELPKVL--------GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY----LQKQLILAAIDMVDANSKSGGY 307 (496)
Q Consensus 240 ~~~~~~--------~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~----lQ~~LL~~A~~~l~~~lkpGG~ 307 (496)
+..... ..+.+|.++..|-......+ ..-....+.++...... -...++..++.. ++.+|.
T Consensus 91 d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~---~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~----m~~~g~ 163 (296)
T 3k31_A 91 DAESVDNMFKVLAEEWGSLDFVVHAVAFSDKNEL---KGRYVDTSLGNFLTSMHISCYSFTYIASKAEPL----MTNGGS 163 (296)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEECCCCCCHHHH---TSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG----CTTCEE
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcCCcccc---cCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHH----hhcCCE
Confidence 642211 11578999986643221000 00112234444433222 223344445444 367899
Q ss_pred EEEEeC
Q 010971 308 IVYSTC 313 (496)
Q Consensus 308 LVYSTC 313 (496)
||+.+.
T Consensus 164 IV~isS 169 (296)
T 3k31_A 164 ILTLSY 169 (296)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 988654
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=92.21 E-value=0.84 Score=42.93 Aligned_cols=80 Identities=13% Similarity=0.135 Sum_probs=55.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC--CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN--TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~--~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~ 247 (496)
.+.+|| +.-|+|+.+.+++..+-. ...|++++.+..++..+.+.+...+. ++.++..|..+.... + ..
T Consensus 3 ~~k~vl-ITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (276)
T 1wma_A 3 GIHVAL-VTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKEY 80 (276)
T ss_dssp CCCEEE-ESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEE-EeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCC-eeEEEECCCCCHHHHHHHHHHHHHhc
Confidence 355677 445678899888876533 35899999999998888888877653 466778888764221 1 01
Q ss_pred CCcCEEEECCCC
Q 010971 248 NTVDRVLLDAPC 259 (496)
Q Consensus 248 ~~fD~VLlDaPC 259 (496)
+.+|.|+..|-.
T Consensus 81 g~id~li~~Ag~ 92 (276)
T 1wma_A 81 GGLDVLVNNAGI 92 (276)
T ss_dssp SSEEEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 378999986643
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=92.20 E-value=1 Score=44.04 Aligned_cols=126 Identities=14% Similarity=0.157 Sum_probs=75.7
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.|| +||.+.+++..+-. ...|+.++.+..++..+.+.+...|. ++.++..|..+..... ..+
T Consensus 30 ~gk~vlVTGa-s~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 107 (301)
T 3tjr_A 30 DGRAAVVTGG-ASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGF-DAHGVVCDVRHLDEMVRLADEAFRLLG 107 (301)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence 5777886655 47788887775533 34899999999999999888887764 4677788887743211 014
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~----~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
.+|.|+..|--...|.+ ...+.++..... .-...++..++..+.. -+.+|.||+.+.
T Consensus 108 ~id~lvnnAg~~~~~~~-------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-~~~~g~iv~isS 168 (301)
T 3tjr_A 108 GVDVVFSNAGIVVAGPL-------AQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLE-QGTGGHIAFTAS 168 (301)
T ss_dssp SCSEEEECCCCCCCBCG-------GGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HCSCEEEEEECC
T ss_pred CCCEEEECCCcCCCCCc-------ccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-cCCCcEEEEeCc
Confidence 79999987643332222 123334333222 2223345555444311 033688887654
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=91.99 E-value=0.45 Score=47.42 Aligned_cols=74 Identities=12% Similarity=0.079 Sum_probs=48.7
Q ss_pred cCCCCCCeEeeccCC--CchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc----ccCC
Q 010971 174 LAPQEKERVIDMAAA--PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK----VLGL 247 (496)
Q Consensus 174 L~~~~g~~VLDmcAg--pGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~----~~~~ 247 (496)
+.+++|++||-.+|| -|..+++++..++ ..|+++|.++.+++.+++ +|...+ ++.....+.. ....
T Consensus 140 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----lga~~~--~~~~~~~~~~~~~~~~~~ 211 (340)
T 3gms_A 140 LNLQRNDVLLVNACGSAIGHLFAQLSQILN--FRLIAVTRNNKHTEELLR----LGAAYV--IDTSTAPLYETVMELTNG 211 (340)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHH----HTCSEE--EETTTSCHHHHHHHHTTT
T ss_pred cccCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----CCCcEE--EeCCcccHHHHHHHHhCC
Confidence 467899999999876 4566666666653 489999999998877654 677643 2332222211 1122
Q ss_pred CCcCEEEE
Q 010971 248 NTVDRVLL 255 (496)
Q Consensus 248 ~~fD~VLl 255 (496)
..||+|+-
T Consensus 212 ~g~Dvvid 219 (340)
T 3gms_A 212 IGADAAID 219 (340)
T ss_dssp SCEEEEEE
T ss_pred CCCcEEEE
Confidence 47999876
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.92 E-value=0.59 Score=46.58 Aligned_cols=96 Identities=24% Similarity=0.349 Sum_probs=61.1
Q ss_pred CCCCCCeEeeccC--CCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc----ccCCC
Q 010971 175 APQEKERVIDMAA--APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK----VLGLN 248 (496)
Q Consensus 175 ~~~~g~~VLDmcA--gpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~----~~~~~ 248 (496)
.+++|++||-.+| |.|..+++++..++ ..|+++|.++.+++.++ .+|...+ +..+...+.. .....
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G--~~Vi~~~~~~~~~~~~~----~~ga~~~--~d~~~~~~~~~~~~~~~~~ 234 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFG--ARVIATAGSEDKLRRAK----ALGADET--VNYTHPDWPKEVRRLTGGK 234 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHTT--CEEEEEESSHHHHHHHH----HHTCSEE--EETTSTTHHHHHHHHTTTT
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH----hcCCCEE--EcCCcccHHHHHHHHhCCC
Confidence 5788999999998 34555556665543 48999999999988764 4676543 2322222211 11124
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.+|+|+- |+| +- .+..+++++ ++||++|..
T Consensus 235 ~~d~vi~---~~g-~~-------------------------~~~~~~~~l----~~~G~~v~~ 264 (343)
T 2eih_A 235 GADKVVD---HTG-AL-------------------------YFEGVIKAT----ANGGRIAIA 264 (343)
T ss_dssp CEEEEEE---SSC-SS-------------------------SHHHHHHHE----EEEEEEEES
T ss_pred CceEEEE---CCC-HH-------------------------HHHHHHHhh----ccCCEEEEE
Confidence 7999986 444 21 156667776 899998763
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.79 E-value=0.3 Score=49.05 Aligned_cols=97 Identities=18% Similarity=0.239 Sum_probs=59.0
Q ss_pred CCCCCCeEeeccC-C-CchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc---CCCC
Q 010971 175 APQEKERVIDMAA-A-PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---GLNT 249 (496)
Q Consensus 175 ~~~~g~~VLDmcA-g-pGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~---~~~~ 249 (496)
.+++|++||-.++ | .|..+++++..++ ..|++.|.++.+++.+++ +|...+ +..+...+.... ....
T Consensus 164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----lGa~~~--~~~~~~~~~~~~~~~~~~g 235 (353)
T 4dup_A 164 GLTEGESVLIHGGTSGIGTTAIQLARAFG--AEVYATAGSTGKCEACER----LGAKRG--INYRSEDFAAVIKAETGQG 235 (353)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----HTCSEE--EETTTSCHHHHHHHHHSSC
T ss_pred CCCCCCEEEEEcCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCCCEE--EeCCchHHHHHHHHHhCCC
Confidence 5789999997742 2 2334444554442 489999999999887653 677543 333322221111 1257
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
||+|+- |+|.. .+..+++++ ++||++|...
T Consensus 236 ~Dvvid---~~g~~--------------------------~~~~~~~~l----~~~G~iv~~g 265 (353)
T 4dup_A 236 VDIILD---MIGAA--------------------------YFERNIASL----AKDGCLSIIA 265 (353)
T ss_dssp EEEEEE---SCCGG--------------------------GHHHHHHTE----EEEEEEEECC
T ss_pred ceEEEE---CCCHH--------------------------HHHHHHHHh----ccCCEEEEEE
Confidence 998876 44421 245667776 9999987643
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=91.78 E-value=1.7 Score=41.84 Aligned_cols=78 Identities=12% Similarity=0.150 Sum_probs=56.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.|.+||=.| |+||.+.+++..+. ....|++++.+..++..+...+...|..++.++..|..+.... + ..+
T Consensus 27 ~~k~vlITG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 105 (286)
T 1xu9_A 27 QGKKVIVTG-ASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG 105 (286)
T ss_dssp TTCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 366787555 56788888877553 3348999999999999888888777766788888898764211 1 014
Q ss_pred CcCEEEEC
Q 010971 249 TVDRVLLD 256 (496)
Q Consensus 249 ~fD~VLlD 256 (496)
.+|.|+..
T Consensus 106 ~iD~li~n 113 (286)
T 1xu9_A 106 GLDMLILN 113 (286)
T ss_dssp SCSEEEEC
T ss_pred CCCEEEEC
Confidence 79999986
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=91.73 E-value=1.6 Score=41.33 Aligned_cols=127 Identities=18% Similarity=0.164 Sum_probs=76.3
Q ss_pred CCCeEeeccCCCc-hHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAPG-GKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpG-gKT~~lA~l~-~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|.+||=.|++ | |.+.+++..+ .....|+.+|.+..++..+...+...+-.++.++..|..+..... ..
T Consensus 21 ~~k~vlITGas-g~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 99 (266)
T 3o38_A 21 KGKVVLVTAAA-GTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKA 99 (266)
T ss_dssp TTCEEEESSCS-SSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-CCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHh
Confidence 46677766663 3 5666666544 333589999999999999988887777667888999987743211 11
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~----~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
+.+|.|+..|-.+..+.+ ...+.+++.... .-...++..++..+.. .+.+|.||+.+.
T Consensus 100 g~id~li~~Ag~~~~~~~-------~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~~iv~~sS 161 (266)
T 3o38_A 100 GRLDVLVNNAGLGGQTPV-------VDMTDEEWDRVLNVTLTSVMRATRAALRYFRG-VDHGGVIVNNAS 161 (266)
T ss_dssp SCCCEEEECCCCCCCCCG-------GGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT-SSCCEEEEEECC
T ss_pred CCCcEEEECCCcCCCCCc-------ccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCCeEEEEeCC
Confidence 478999987643332221 123444333222 2223455555554411 125688877543
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=91.70 E-value=0.38 Score=48.12 Aligned_cols=98 Identities=18% Similarity=0.119 Sum_probs=59.8
Q ss_pred cCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc----cCCC
Q 010971 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV----LGLN 248 (496)
Q Consensus 174 L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~----~~~~ 248 (496)
+.+ +|++||-.+||+ |..++++|..++ ...|++.|.++.+++.++ .+|...+ +..+...+... ....
T Consensus 164 ~~~-~g~~VlV~GaG~vG~~~~q~a~~~G-a~~Vi~~~~~~~~~~~~~----~~Ga~~~--~~~~~~~~~~~v~~~~~g~ 235 (348)
T 2d8a_A 164 GPI-SGKSVLITGAGPLGLLGIAVAKASG-AYPVIVSEPSDFRRELAK----KVGADYV--INPFEEDVVKEVMDITDGN 235 (348)
T ss_dssp SCC-TTCCEEEECCSHHHHHHHHHHHHTT-CCSEEEECSCHHHHHHHH----HHTCSEE--ECTTTSCHHHHHHHHTTTS
T ss_pred cCC-CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHH----HhCCCEE--ECCCCcCHHHHHHHHcCCC
Confidence 356 899999999843 333344444442 237999999999887664 5677543 33332222111 1123
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.||+|+- |+|. ...+..+++++ ++||++|..
T Consensus 236 g~D~vid---~~g~-------------------------~~~~~~~~~~l----~~~G~iv~~ 266 (348)
T 2d8a_A 236 GVDVFLE---FSGA-------------------------PKALEQGLQAV----TPAGRVSLL 266 (348)
T ss_dssp CEEEEEE---CSCC-------------------------HHHHHHHHHHE----EEEEEEEEC
T ss_pred CCCEEEE---CCCC-------------------------HHHHHHHHHHH----hcCCEEEEE
Confidence 6999975 3332 12356777776 999998764
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.53 E-value=1.2 Score=42.02 Aligned_cols=123 Identities=15% Similarity=0.116 Sum_probs=73.7
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeC-CHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~-s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~ 247 (496)
.|.+||=.| |+|+.+.+++..+... ..|++++. +...+..+...+...|. ++.++..|..+.... + ..
T Consensus 20 ~~k~vlItG-asggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 97 (274)
T 1ja9_A 20 AGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVALFDKAVSHF 97 (274)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 366777554 5788888888765433 48889998 88888888877777664 466778888764321 1 01
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~----~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
+.+|.|+..|-....+.+ ...+.++..... .-...++..++..+ +.||.||+.+.
T Consensus 98 ~~~d~vi~~Ag~~~~~~~-------~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~iv~~sS 156 (274)
T 1ja9_A 98 GGLDFVMSNSGMEVWCDE-------LEVTQELFDKVFNLNTRGQFFVAQQGLKHC----RRGGRIILTSS 156 (274)
T ss_dssp SCEEEEECCCCCCCCCCG-------GGCCHHHHHHHHHHHTHHHHHHHHHHHHHE----EEEEEEEEECC
T ss_pred CCCCEEEECCCCCCCccc-------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHH----hhCCEEEEEcC
Confidence 378999876543322211 123333332222 22334555556654 45688887643
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=91.50 E-value=0.56 Score=46.02 Aligned_cols=81 Identities=20% Similarity=0.201 Sum_probs=57.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.| |.||.+.+++..+- ....|+.+|.+..++..+...+...+..++.++..|..+..... ..+
T Consensus 40 ~~k~vlVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 118 (293)
T 3rih_A 40 SARSVLVTG-GTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFG 118 (293)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 355666554 56788888877653 33489999999999988888887777567888889988742210 115
Q ss_pred CcCEEEECCCC
Q 010971 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~fD~VLlDaPC 259 (496)
.+|.++..|-.
T Consensus 119 ~iD~lvnnAg~ 129 (293)
T 3rih_A 119 ALDVVCANAGI 129 (293)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 78999987643
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=91.44 E-value=0.23 Score=49.77 Aligned_cols=96 Identities=19% Similarity=0.129 Sum_probs=60.4
Q ss_pred cCCCCCCeEeeccC--CCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc----ccCC
Q 010971 174 LAPQEKERVIDMAA--APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK----VLGL 247 (496)
Q Consensus 174 L~~~~g~~VLDmcA--gpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~----~~~~ 247 (496)
..+++|++||-.+| |.|..+++++..++ ..|++++.++.+++.++ .+|...+ +..+ ..+.. ....
T Consensus 155 ~~~~~g~~VlV~Gasg~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~----~~ga~~v--~~~~-~~~~~~v~~~~~~ 225 (342)
T 4eye_A 155 GQLRAGETVLVLGAAGGIGTAAIQIAKGMG--AKVIAVVNRTAATEFVK----SVGADIV--LPLE-EGWAKAVREATGG 225 (342)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHH----HHTCSEE--EESS-TTHHHHHHHHTTT
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH----hcCCcEE--ecCc-hhHHHHHHHHhCC
Confidence 35789999998876 23445555555553 48999999999887655 4677643 3333 33211 1122
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
..||+|+- |+|.. .+..+++++ ++||++|..
T Consensus 226 ~g~Dvvid---~~g~~--------------------------~~~~~~~~l----~~~G~iv~~ 256 (342)
T 4eye_A 226 AGVDMVVD---PIGGP--------------------------AFDDAVRTL----ASEGRLLVV 256 (342)
T ss_dssp SCEEEEEE---SCC----------------------------CHHHHHHTE----EEEEEEEEC
T ss_pred CCceEEEE---CCchh--------------------------HHHHHHHhh----cCCCEEEEE
Confidence 37999975 44431 145677776 999998863
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=91.44 E-value=0.82 Score=50.06 Aligned_cols=131 Identities=16% Similarity=0.091 Sum_probs=79.3
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcC---------CC--cEEEEEeC---CHHHHHHHH-----------HHHHHc-----
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMK---------NT--GLIYANEM---KASRLKSLT-----------ANLHRM----- 226 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~---------~~--g~V~A~D~---s~~rl~~l~-----------~nl~r~----- 226 (496)
++.-+|||+|-|+|...+...+... .. -.++++|. ++.-+..+- +.+..+
T Consensus 65 ~~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (676)
T 3ps9_A 65 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 144 (676)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCS
T ss_pred CCceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCC
Confidence 3446999999999998887766541 11 25899998 777665222 112222
Q ss_pred CC-----C----eEEEEecCCCCCccccC---CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHH
Q 010971 227 GV-----T----NTIVCNYDGNELPKVLG---LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAA 294 (496)
Q Consensus 227 g~-----~----nv~v~~~D~~~~~~~~~---~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A 294 (496)
|+ . .+.+..+|+...-..+. ...||.|++|+- .-+++|++ |+. +++...
T Consensus 145 ~~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f-----~p~~np~~---w~~-----------~~~~~l 205 (676)
T 3ps9_A 145 GCHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGF-----APAKNPDM---WTQ-----------NLFNAM 205 (676)
T ss_dssp EEEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCS-----CGGGCGGG---SCH-----------HHHHHH
T ss_pred CceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCC-----CCcCChhh---hhH-----------HHHHHH
Confidence 11 1 13345567654322121 257999999974 22577875 332 345555
Q ss_pred HHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEEee
Q 010971 295 IDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVP 337 (496)
Q Consensus 295 ~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~lv~ 337 (496)
.+++ +|||++...+|. ..|...|...++.+..
T Consensus 206 ~~~~----~~g~~~~t~~~~-------~~vr~~L~~aGf~v~~ 237 (676)
T 3ps9_A 206 ARLA----RPGGTLATFTSA-------GFVRRGLQDAGFTMQK 237 (676)
T ss_dssp HHHE----EEEEEEEESCCC-------HHHHHHHHHHTCEEEE
T ss_pred HHHh----CCCCEEEeccCc-------HHHHHHHHhCCeEEEe
Confidence 5555 999988654444 4677777776766554
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=91.39 E-value=0.14 Score=49.48 Aligned_cols=90 Identities=12% Similarity=0.096 Sum_probs=49.7
Q ss_pred EEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 232 IVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 232 ~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.++++|+..+...+..++||+|++|||+... . .+-+ .+. ...........+|..+.++| +|||.|+..
T Consensus 6 ~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~-~--~~~d---~~~--~~~~y~~~~~~~l~~~~~~L----k~~g~i~v~ 73 (260)
T 1g60_A 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLS-K--ADWD---SFD--SHNEFLAFTYRWIDKVLDKL----DKDGSLYIF 73 (260)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSC-S--SGGG---CCS--SHHHHHHHHHHHHHHHHHHE----EEEEEEEEE
T ss_pred eEEechHHHHHHhccccccCEEEECCCCCCC-c--cccc---ccC--CHHHHHHHHHHHHHHHHHHh----cCCeEEEEE
Confidence 4567887554333445789999999998432 1 0000 110 12222333455666666665 999999887
Q ss_pred eCCCCCcCCHHHHHHHHHhCCcEEee
Q 010971 312 TCSIMVTENEAVIDYALKKRDVKLVP 337 (496)
Q Consensus 312 TCSi~~eENE~vV~~~L~~~~~~lv~ 337 (496)
.|.. +. ..+..++...++.+..
T Consensus 74 ~~d~---~~-~~~~~~~~~~gf~~~~ 95 (260)
T 1g60_A 74 NTPF---NC-AFICQYLVSKGMIFQN 95 (260)
T ss_dssp ECHH---HH-HHHHHHHHHTTCEEEE
T ss_pred cCcH---HH-HHHHHHHHhhccceeE
Confidence 6543 11 2222344555666554
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=91.31 E-value=0.91 Score=44.94 Aligned_cols=80 Identities=9% Similarity=0.052 Sum_probs=57.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|.+||=.| |+||.+.+++..+- ....|++.+.+..+++.+...+...+.. ++.++..|..+..... ..
T Consensus 7 ~~k~vlVTG-as~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (319)
T 3ioy_A 7 AGRTAFVTG-GANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF 85 (319)
T ss_dssp TTCEEEEET-TTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEcC-CchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 456777555 45788888887653 3348999999999999998888877653 5788888987643211 12
Q ss_pred CCcCEEEECCC
Q 010971 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~fD~VLlDaP 258 (496)
+.+|.|+..|-
T Consensus 86 g~id~lv~nAg 96 (319)
T 3ioy_A 86 GPVSILCNNAG 96 (319)
T ss_dssp CCEEEEEECCC
T ss_pred CCCCEEEECCC
Confidence 57899998764
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=91.30 E-value=0.2 Score=50.47 Aligned_cols=96 Identities=10% Similarity=0.167 Sum_probs=60.7
Q ss_pred CCCCC------CeEeeccCCCchHHHHH-HHHc-CCCc--EEEEEeCCHH---HHHHHHHHHHHcCCCeEEEEecCCCCC
Q 010971 175 APQEK------ERVIDMAAAPGGKTTYI-AALM-KNTG--LIYANEMKAS---RLKSLTANLHRMGVTNTIVCNYDGNEL 241 (496)
Q Consensus 175 ~~~~g------~~VLDmcAgpGgKT~~l-A~l~-~~~g--~V~A~D~s~~---rl~~l~~nl~r~g~~nv~v~~~D~~~~ 241 (496)
.+++| ++||-.+| |+.++.+ .++. +..| .|+++|.++. +++.+ +++|.+.+ ..+...+
T Consensus 163 ~~~~g~~~~~~~~VlV~Ga--G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~----~~lGa~~v---~~~~~~~ 233 (357)
T 2b5w_A 163 YASRSAFDWDPSSAFVLGN--GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDII----EELDATYV---DSRQTPV 233 (357)
T ss_dssp HHTTTTSCCCCCEEEEECC--SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHH----HHTTCEEE---ETTTSCG
T ss_pred CCCCCcccCCCCEEEEECC--CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHH----HHcCCccc---CCCccCH
Confidence 46789 99999997 6666655 5555 4333 4999999988 88765 35787544 3332222
Q ss_pred ccccC-CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 242 PKVLG-LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 242 ~~~~~-~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
..... .+.||+||- |+|.. ..+..+++++ ++||++|..
T Consensus 234 ~~i~~~~gg~Dvvid---~~g~~-------------------------~~~~~~~~~l----~~~G~iv~~ 272 (357)
T 2b5w_A 234 EDVPDVYEQMDFIYE---ATGFP-------------------------KHAIQSVQAL----APNGVGALL 272 (357)
T ss_dssp GGHHHHSCCEEEEEE---CSCCH-------------------------HHHHHHHHHE----EEEEEEEEC
T ss_pred HHHHHhCCCCCEEEE---CCCCh-------------------------HHHHHHHHHH----hcCCEEEEE
Confidence 22100 237999975 44421 1356777876 999998764
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=91.17 E-value=2.2 Score=39.75 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=55.7
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.|.+||=.| |+|+.+.+++..+-.. ..|++++.+..++..+.+.+...+. ++.++..|..+.... + ..+
T Consensus 10 ~~~~vlVtG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 87 (255)
T 1fmc_A 10 DGKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCC-ceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 356777555 6788888888765443 4899999999998888888776654 566778888764221 1 013
Q ss_pred CcCEEEECCCC
Q 010971 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~fD~VLlDaPC 259 (496)
.+|.|+..|-.
T Consensus 88 ~~d~vi~~Ag~ 98 (255)
T 1fmc_A 88 KVDILVNNAGG 98 (255)
T ss_dssp SCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999986543
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=90.98 E-value=0.66 Score=46.58 Aligned_cols=98 Identities=17% Similarity=0.200 Sum_probs=58.3
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc----cccCCCC
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGLNT 249 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~----~~~~~~~ 249 (496)
.+++|++||-.+| .|+.+..++++... ...|++.|.++.+++.+ +.+|...+ +..+...+. .......
T Consensus 159 ~~~~g~~vlV~Ga-~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~----~~~g~~~~--~~~~~~~~~~~~~~~~~~~~ 231 (354)
T 2j8z_A 159 NVQAGDYVLIHAG-LSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMA----EKLGAAAG--FNYKKEDFSEATLKFTKGAG 231 (354)
T ss_dssp CCCTTCEEEESST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH----HHHTCSEE--EETTTSCHHHHHHHHTTTSC
T ss_pred CCCCCCEEEEECC-ccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH----HHcCCcEE--EecCChHHHHHHHHHhcCCC
Confidence 5788999998864 34444444443321 24899999999998776 34576532 333222221 1111246
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+|.|+- |+|.. .+..+++++ ++||++|...
T Consensus 232 ~d~vi~---~~G~~--------------------------~~~~~~~~l----~~~G~iv~~G 261 (354)
T 2j8z_A 232 VNLILD---CIGGS--------------------------YWEKNVNCL----ALDGRWVLYG 261 (354)
T ss_dssp EEEEEE---SSCGG--------------------------GHHHHHHHE----EEEEEEEECC
T ss_pred ceEEEE---CCCch--------------------------HHHHHHHhc----cCCCEEEEEe
Confidence 999976 33321 145566776 9999987643
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=90.95 E-value=3.2 Score=39.52 Aligned_cols=126 Identities=10% Similarity=0.074 Sum_probs=74.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHH-cCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHR-MGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r-~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|.+||=.| |.||.+.+++..+-. ...|+.+|.+..+++.+...+.. .+-.++.++..|..+..... ..
T Consensus 7 ~~k~~lVTG-as~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 85 (265)
T 3lf2_A 7 SEAVAVVTG-GSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL 85 (265)
T ss_dssp TTCEEEEET-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 355666555 557788887775543 34899999999999998888876 55555788888987643211 11
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHH----HHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~----l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
+..|.++..|--+..+.+ ...+.++... ...-...++..++..+.. +.+|.||+.+.
T Consensus 86 g~id~lvnnAg~~~~~~~-------~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~--~~~g~iv~isS 146 (265)
T 3lf2_A 86 GCASILVNNAGQGRVSTF-------AETTDEAWSEELQLKFFSVIHPVRAFLPQLES--RADAAIVCVNS 146 (265)
T ss_dssp CSCSEEEECCCCCCCBCT-------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT--STTEEEEEEEE
T ss_pred CCCCEEEECCCCCCCCCc-------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCeEEEEECC
Confidence 578999987643322222 1223333322 222223445555555411 23677776543
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.93 E-value=1.7 Score=41.75 Aligned_cols=82 Identities=10% Similarity=0.101 Sum_probs=58.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC-ccc---c-----CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~-~~~---~-----~~ 247 (496)
.+.+||=.| |+||.+.+++..+- ....|++++.+..++..+...+...+-.++.++..|..+. ... . ..
T Consensus 11 ~~k~vlITG-as~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~ 89 (311)
T 3o26_A 11 KRRCAVVTG-GNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF 89 (311)
T ss_dssp -CCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEec-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence 356677555 55788888877653 3358999999999999988888877766788888998875 211 0 11
Q ss_pred CCcCEEEECCCCC
Q 010971 248 NTVDRVLLDAPCS 260 (496)
Q Consensus 248 ~~fD~VLlDaPCS 260 (496)
+.+|.|+..|-..
T Consensus 90 g~iD~lv~nAg~~ 102 (311)
T 3o26_A 90 GKLDILVNNAGVA 102 (311)
T ss_dssp SSCCEEEECCCCC
T ss_pred CCCCEEEECCccc
Confidence 5799999976433
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=90.64 E-value=0.37 Score=47.90 Aligned_cols=98 Identities=22% Similarity=0.306 Sum_probs=58.6
Q ss_pred cCCCCCCeEeeccC--CCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec-CCCCCcccc---CC
Q 010971 174 LAPQEKERVIDMAA--APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY-DGNELPKVL---GL 247 (496)
Q Consensus 174 L~~~~g~~VLDmcA--gpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~-D~~~~~~~~---~~ 247 (496)
..+++|++||-.|| |-|..+..++..++ ..|+++|.++.+++.+++ .+|...+ +.. +...+.... ..
T Consensus 151 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G--~~V~~~~~~~~~~~~~~~---~~g~~~~--~d~~~~~~~~~~~~~~~~ 223 (345)
T 2j3h_A 151 CSPKEGETVYVSAASGAVGQLVGQLAKMMG--CYVVGSAGSKEKVDLLKT---KFGFDDA--FNYKEESDLTAALKRCFP 223 (345)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH---TSCCSEE--EETTSCSCSHHHHHHHCT
T ss_pred hCCCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH---HcCCceE--EecCCHHHHHHHHHHHhC
Confidence 45789999999886 22333344444432 489999999998876642 4676533 222 211221111 12
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
..+|.|+-- +|. ..+..+++++ ++||++|..
T Consensus 224 ~~~d~vi~~---~g~--------------------------~~~~~~~~~l----~~~G~~v~~ 254 (345)
T 2j3h_A 224 NGIDIYFEN---VGG--------------------------KMLDAVLVNM----NMHGRIAVC 254 (345)
T ss_dssp TCEEEEEES---SCH--------------------------HHHHHHHTTE----EEEEEEEEC
T ss_pred CCCcEEEEC---CCH--------------------------HHHHHHHHHH----hcCCEEEEE
Confidence 469998762 221 1366777776 999998763
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=90.48 E-value=0.28 Score=49.37 Aligned_cols=97 Identities=10% Similarity=0.081 Sum_probs=58.7
Q ss_pred CCC-CCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCC-CCCccccCCCCcC
Q 010971 175 APQ-EKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVD 251 (496)
Q Consensus 175 ~~~-~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~-~~~~~~~~~~~fD 251 (496)
.++ +|++||=.+||+ |..++++|..++ ..|+++|.++.+++.+. +++|.+.+. ..+- ..+.... +.||
T Consensus 176 ~~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~~~~~~~~~~~---~~lGa~~vi--~~~~~~~~~~~~--~g~D 246 (357)
T 2cf5_A 176 GLKQPGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSNKKREEAL---QDLGADDYV--IGSDQAKMSELA--DSLD 246 (357)
T ss_dssp STTSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSTTHHHHHH---TTSCCSCEE--ETTCHHHHHHST--TTEE
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHH---HHcCCceee--ccccHHHHHHhc--CCCC
Confidence 567 999999997643 333344555543 48999999998876653 257876542 2221 1111111 4799
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+||- |+|... .+..+++++ ++||++|...
T Consensus 247 ~vid---~~g~~~-------------------------~~~~~~~~l----~~~G~iv~~G 275 (357)
T 2cf5_A 247 YVID---TVPVHH-------------------------ALEPYLSLL----KLDGKLILMG 275 (357)
T ss_dssp EEEE---CCCSCC-------------------------CSHHHHTTE----EEEEEEEECS
T ss_pred EEEE---CCCChH-------------------------HHHHHHHHh----ccCCEEEEeC
Confidence 9875 554321 145566776 9999988643
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.47 E-value=0.49 Score=46.74 Aligned_cols=97 Identities=16% Similarity=0.114 Sum_probs=57.6
Q ss_pred CCCCCC-eEeeccC--CCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCC-CCCccccCCCCc
Q 010971 175 APQEKE-RVIDMAA--APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTV 250 (496)
Q Consensus 175 ~~~~g~-~VLDmcA--gpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~-~~~~~~~~~~~f 250 (496)
.+++|+ +||-.+| |-|..++++|..++ ..|++.+.++.+++.++ .+|.+.+.-. .+. ...........|
T Consensus 145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~----~lGa~~~i~~-~~~~~~~~~~~~~~~~ 217 (328)
T 1xa0_A 145 GLTPERGPVLVTGATGGVGSLAVSMLAKRG--YTVEASTGKAAEHDYLR----VLGAKEVLAR-EDVMAERIRPLDKQRW 217 (328)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCTTCHHHHH----HTTCSEEEEC-C---------CCSCCE
T ss_pred CCCCCCceEEEecCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHH----HcCCcEEEec-CCcHHHHHHHhcCCcc
Confidence 577886 8998886 33444556666553 47999999988887664 4787654211 111 111111122469
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
|+||- |+|.. .+..+++++ ++||++|..
T Consensus 218 d~vid---~~g~~--------------------------~~~~~~~~l----~~~G~~v~~ 245 (328)
T 1xa0_A 218 AAAVD---PVGGR--------------------------TLATVLSRM----RYGGAVAVS 245 (328)
T ss_dssp EEEEE---CSTTT--------------------------THHHHHHTE----EEEEEEEEC
T ss_pred cEEEE---CCcHH--------------------------HHHHHHHhh----ccCCEEEEE
Confidence 98874 44321 156677776 999998753
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=90.43 E-value=0.31 Score=48.43 Aligned_cols=98 Identities=19% Similarity=0.216 Sum_probs=60.0
Q ss_pred cCCCCCCeEeeccCC--CchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc---CCC
Q 010971 174 LAPQEKERVIDMAAA--PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---GLN 248 (496)
Q Consensus 174 L~~~~g~~VLDmcAg--pGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~---~~~ 248 (496)
..+++|++||-.+|+ -|.-+++++..++ ..|+++|.++.+++.+. +.+|...+ +......+.... ..+
T Consensus 145 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~---~~~g~~~~--~~~~~~~~~~~~~~~~~~ 217 (336)
T 4b7c_A 145 GQPKNGETVVISGAAGAVGSVAGQIARLKG--CRVVGIAGGAEKCRFLV---EELGFDGA--IDYKNEDLAAGLKRECPK 217 (336)
T ss_dssp TCCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHH---HTTCCSEE--EETTTSCHHHHHHHHCTT
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH---HHcCCCEE--EECCCHHHHHHHHHhcCC
Confidence 368899999988762 3444444444432 48999999999887652 34677543 232222221111 124
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.||+|+- |+|. ..+..+++++ ++||++|..
T Consensus 218 ~~d~vi~---~~g~--------------------------~~~~~~~~~l----~~~G~iv~~ 247 (336)
T 4b7c_A 218 GIDVFFD---NVGG--------------------------EILDTVLTRI----AFKARIVLC 247 (336)
T ss_dssp CEEEEEE---SSCH--------------------------HHHHHHHTTE----EEEEEEEEC
T ss_pred CceEEEE---CCCc--------------------------chHHHHHHHH----hhCCEEEEE
Confidence 7998875 3331 1366777776 999998864
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=90.41 E-value=0.47 Score=47.09 Aligned_cols=96 Identities=17% Similarity=0.125 Sum_probs=59.2
Q ss_pred CCCCCCeEeeccCC--CchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc----ccCCC
Q 010971 175 APQEKERVIDMAAA--PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK----VLGLN 248 (496)
Q Consensus 175 ~~~~g~~VLDmcAg--pGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~----~~~~~ 248 (496)
.+++|++||-.+|+ -|..+++++..++ ..|+++|.++.+++.+ +.+|...+ +..+...+.. .....
T Consensus 145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~----~~~ga~~~--~~~~~~~~~~~~~~~~~~~ 216 (334)
T 3qwb_A 145 HVKKGDYVLLFAAAGGVGLILNQLLKMKG--AHTIAVASTDEKLKIA----KEYGAEYL--INASKEDILRQVLKFTNGK 216 (334)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSHHHHHHH----HHTTCSEE--EETTTSCHHHHHHHHTTTS
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHH----HHcCCcEE--EeCCCchHHHHHHHHhCCC
Confidence 57899999988742 2333444444442 4899999999998865 44676543 3332222211 11234
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.||+|+- |+|.. .+..+++++ ++||++|..
T Consensus 217 g~D~vid---~~g~~--------------------------~~~~~~~~l----~~~G~iv~~ 246 (334)
T 3qwb_A 217 GVDASFD---SVGKD--------------------------TFEISLAAL----KRKGVFVSF 246 (334)
T ss_dssp CEEEEEE---CCGGG--------------------------GHHHHHHHE----EEEEEEEEC
T ss_pred CceEEEE---CCChH--------------------------HHHHHHHHh----ccCCEEEEE
Confidence 7999876 44321 256677776 999998864
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=90.41 E-value=0.83 Score=45.14 Aligned_cols=96 Identities=17% Similarity=0.169 Sum_probs=60.0
Q ss_pred CCCCCCeEeeccC-C-CchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc----ccCCC
Q 010971 175 APQEKERVIDMAA-A-PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK----VLGLN 248 (496)
Q Consensus 175 ~~~~g~~VLDmcA-g-pGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~----~~~~~ 248 (496)
.+++|++||-.++ | -|..+++++..++ ..|++.|.++.+++.++ .+|...+ ++.+...+.. .....
T Consensus 137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~----~~Ga~~~--~~~~~~~~~~~~~~~~~~~ 208 (325)
T 3jyn_A 137 QVKPGEIILFHAAAGGVGSLACQWAKALG--AKLIGTVSSPEKAAHAK----ALGAWET--IDYSHEDVAKRVLELTDGK 208 (325)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHH----HHTCSEE--EETTTSCHHHHHHHHTTTC
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH----HcCCCEE--EeCCCccHHHHHHHHhCCC
Confidence 5789999998773 2 2444445555543 48999999999988765 4676543 3332222211 11224
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.+|+|+- |+|.. .+..+++++ ++||++|..
T Consensus 209 g~Dvvid---~~g~~--------------------------~~~~~~~~l----~~~G~iv~~ 238 (325)
T 3jyn_A 209 KCPVVYD---GVGQD--------------------------TWLTSLDSV----APRGLVVSF 238 (325)
T ss_dssp CEEEEEE---SSCGG--------------------------GHHHHHTTE----EEEEEEEEC
T ss_pred CceEEEE---CCChH--------------------------HHHHHHHHh----cCCCEEEEE
Confidence 7998875 44421 256677776 999998864
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=90.39 E-value=4.8 Score=38.87 Aligned_cols=82 Identities=13% Similarity=-0.041 Sum_probs=53.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEE-ecCCCCCccccC-CCCcCEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVC-NYDGNELPKVLG-LNTVDRVL 254 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~-~~D~~~~~~~~~-~~~fD~VL 254 (496)
.+.+||=. -|+|+.+.+++..+... ..|++++.+......+...+....-.++.++ ..|..+...... ...+|.|+
T Consensus 10 ~~~~vlVT-GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 88 (342)
T 1y1p_A 10 EGSLVLVT-GANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA 88 (342)
T ss_dssp TTCEEEEE-TTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred CCCEEEEE-CCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEEE
Confidence 46778844 46799999888755433 4899999998887766655543222456666 678765432210 14789999
Q ss_pred ECCCCC
Q 010971 255 LDAPCS 260 (496)
Q Consensus 255 lDaPCS 260 (496)
.-|..+
T Consensus 89 h~A~~~ 94 (342)
T 1y1p_A 89 HIASVV 94 (342)
T ss_dssp ECCCCC
T ss_pred EeCCCC
Confidence 876544
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.18 E-value=4.2 Score=38.77 Aligned_cols=79 Identities=14% Similarity=0.092 Sum_probs=55.7
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.|.+||=.| |+|+.+.+++..+. ....|+++|.+..++..+...+...|. ++.++..|..+.... + ..+
T Consensus 30 ~~k~vlITG-asggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~g 107 (272)
T 1yb1_A 30 TGEIVLITG-AGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSNREDIYSSAKKVKAEIG 107 (272)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCC-eEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 356777555 56888888887553 334899999999999888888877664 577788888764321 1 124
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
.+|.|+..|-
T Consensus 108 ~iD~li~~Ag 117 (272)
T 1yb1_A 108 DVSILVNNAG 117 (272)
T ss_dssp CCSEEEECCC
T ss_pred CCcEEEECCC
Confidence 7999998764
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.14 E-value=2.1 Score=40.81 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=58.1
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.| |.||.+.+++..+-. ...|+.+|.+...++.+...+...+..++.++..|..+..... ..+
T Consensus 9 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 87 (262)
T 3pk0_A 9 QGRSVVVTG-GTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFG 87 (262)
T ss_dssp TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 466777555 557788888876533 3489999999999999988888877667888889987743211 114
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
.+|.++..|-
T Consensus 88 ~id~lvnnAg 97 (262)
T 3pk0_A 88 GIDVVCANAG 97 (262)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999998764
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=89.91 E-value=0.33 Score=48.73 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=36.9
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCH---HHHHHHHHHHHHcC
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA---SRLKSLTANLHRMG 227 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~---~rl~~l~~nl~r~g 227 (496)
-.+|+.|||-+||+|..+.....+ + ...+++|+++ .-++.+.+++.+.|
T Consensus 240 ~~~~~~vlDpF~GsGtt~~aa~~~-~--r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 240 SHPGSTVLDFFAGSGVTARVAIQE-G--RNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp SCTTCEEEETTCTTCHHHHHHHHH-T--CEEEEEESSTHHHHHHHHHHHHC----
T ss_pred CCCCCEEEecCCCCCHHHHHHHHc-C--CcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 368999999999999866544443 2 5789999999 99999999888765
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=89.90 E-value=0.49 Score=46.86 Aligned_cols=99 Identities=17% Similarity=0.204 Sum_probs=58.4
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc---CCCC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---GLNT 249 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~---~~~~ 249 (496)
..+++|++||-.||+ |+.+..+++++. ....|+++|.++.+++.+ +.+|...+ +-..|...+...+ ..+.
T Consensus 141 ~~~~~g~~vlV~Ga~-ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~----~~~g~~~~-~d~~~~~~~~~~~~~~~~~~ 214 (333)
T 1v3u_A 141 CGVKGGETVLVSAAA-GAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL----KQIGFDAA-FNYKTVNSLEEALKKASPDG 214 (333)
T ss_dssp SCCCSSCEEEEESTT-BHHHHHHHHHHHHTTCEEEEEESSHHHHHHH----HHTTCSEE-EETTSCSCHHHHHHHHCTTC
T ss_pred hCCCCCCEEEEecCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----HhcCCcEE-EecCCHHHHHHHHHHHhCCC
Confidence 357899999998863 445554444432 124899999999888766 34576432 2111212221111 1147
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
+|.|+..+ |. ..+..+++++ ++||++|..
T Consensus 215 ~d~vi~~~---g~--------------------------~~~~~~~~~l----~~~G~~v~~ 243 (333)
T 1v3u_A 215 YDCYFDNV---GG--------------------------EFLNTVLSQM----KDFGKIAIC 243 (333)
T ss_dssp EEEEEESS---CH--------------------------HHHHHHHTTE----EEEEEEEEC
T ss_pred CeEEEECC---Ch--------------------------HHHHHHHHHH----hcCCEEEEE
Confidence 99987633 20 1256677776 999998764
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.90 E-value=0.26 Score=49.34 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=41.0
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT 229 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~ 229 (496)
-.+|+.|||-+||+|..+. .|..++ ...+++|+++..+..+..++.+.+..
T Consensus 250 ~~~~~~VlDpF~GsGtt~~-aa~~~g--r~~ig~e~~~~~~~~~~~r~~~~~~~ 300 (323)
T 1boo_A 250 TEPDDLVVDIFGGSNTTGL-VAERES--RKWISFEMKPEYVAASAFRFLDNNIS 300 (323)
T ss_dssp CCTTCEEEETTCTTCHHHH-HHHHTT--CEEEEEESCHHHHHHHHGGGSCSCSC
T ss_pred CCCCCEEEECCCCCCHHHH-HHHHcC--CCEEEEeCCHHHHHHHHHHHHhcccc
Confidence 3689999999999998554 344443 58999999999999999998877653
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.80 E-value=1.6 Score=41.29 Aligned_cols=128 Identities=12% Similarity=0.054 Sum_probs=72.3
Q ss_pred CCCCeEeeccCC-CchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------C
Q 010971 177 QEKERVIDMAAA-PGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------G 246 (496)
Q Consensus 177 ~~g~~VLDmcAg-pGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~ 246 (496)
..+.+||=.|++ +||.+.+++..+- ....|+.++.+....+.+.+.....+ .+.++..|..+..... .
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~ 89 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG--SELVFPCDVADDAQIDALFASLKTH 89 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC--CcEEEECCCCCHHHHHHHHHHHHHH
Confidence 457888888874 4788888877653 33489999888655555555555554 3667788887643211 1
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhcc-CCHHHHHHHHH----HHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTS-KSLEDIQKCSY----LQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~-~s~~~i~~l~~----lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
.+..|.++..|--...+.+. .-.+. .+.+++..... -...++..++..+ +++|.||+.+.
T Consensus 90 ~g~id~lv~nAg~~~~~~~~---~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~g~iv~isS 154 (271)
T 3ek2_A 90 WDSLDGLVHSIGFAPREAIA---GDFLDGLTRENFRIAHDISAYSFPALAKAALPML----SDDASLLTLSY 154 (271)
T ss_dssp CSCEEEEEECCCCCCGGGGS---SCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGE----EEEEEEEEEEC
T ss_pred cCCCCEEEECCccCcccccc---CccccccCHHHHHHHHhhhHHHHHHHHHHHHHHh----ccCceEEEEec
Confidence 25789999866322210000 00111 34444433322 2233445555544 66888887654
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=89.60 E-value=0.41 Score=48.39 Aligned_cols=97 Identities=11% Similarity=0.125 Sum_probs=58.1
Q ss_pred CCC-CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCC-CCccccCCCCcC
Q 010971 175 APQ-EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN-ELPKVLGLNTVD 251 (496)
Q Consensus 175 ~~~-~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~-~~~~~~~~~~fD 251 (496)
.++ +|++||=.++ |+.++.++++... ...|++++.++.+++.+. +.+|...+ +..+-. .+.... +.||
T Consensus 183 ~~~~~g~~VlV~Ga--G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~---~~lGa~~v--~~~~~~~~~~~~~--~~~D 253 (366)
T 1yqd_A 183 GLDEPGKHIGIVGL--GGLGHVAVKFAKAFGSKVTVISTSPSKKEEAL---KNFGADSF--LVSRDQEQMQAAA--GTLD 253 (366)
T ss_dssp TCCCTTCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCGGGHHHHH---HTSCCSEE--EETTCHHHHHHTT--TCEE
T ss_pred CcCCCCCEEEEECC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---HhcCCceE--EeccCHHHHHHhh--CCCC
Confidence 566 8999999885 5555544443321 148999999998876653 35777543 222211 111111 4799
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+||- |+|... .+..+++++ ++||++|...
T Consensus 254 ~vid---~~g~~~-------------------------~~~~~~~~l----~~~G~iv~~g 282 (366)
T 1yqd_A 254 GIID---TVSAVH-------------------------PLLPLFGLL----KSHGKLILVG 282 (366)
T ss_dssp EEEE---CCSSCC-------------------------CSHHHHHHE----EEEEEEEECC
T ss_pred EEEE---CCCcHH-------------------------HHHHHHHHH----hcCCEEEEEc
Confidence 9985 444321 134566666 8999987643
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=89.57 E-value=2.4 Score=39.78 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=56.1
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.| |+||.+.+++..+-. ...|+++|.+...+..+...+...+. .+.++..|..+..... ..+
T Consensus 8 ~~k~vlITG-as~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T 3qiv_A 8 ENKVGIVTG-SGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGG-TAISVAVDVSDPESAKAMADRTLAEFG 85 (253)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356677555 567888888776543 34899999999999999888877664 5677788987743211 014
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
.+|.|+..|-
T Consensus 86 ~id~li~~Ag 95 (253)
T 3qiv_A 86 GIDYLVNNAA 95 (253)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999998664
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=89.29 E-value=0.57 Score=47.23 Aligned_cols=98 Identities=19% Similarity=0.200 Sum_probs=61.4
Q ss_pred cCCCCCCeEeeccC-C-CchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc---CCC
Q 010971 174 LAPQEKERVIDMAA-A-PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---GLN 248 (496)
Q Consensus 174 L~~~~g~~VLDmcA-g-pGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~---~~~ 248 (496)
..+++|++||-.+| | .|..+++++..++ ..|++.+.++.+++.++ .+|...+ +..+...+.... ...
T Consensus 159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~----~~Ga~~~--~~~~~~~~~~~~~~~~~~ 230 (362)
T 2c0c_A 159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKAK--CHVIGTCSSDEKSAFLK----SLGCDRP--INYKTEPVGTVLKQEYPE 230 (362)
T ss_dssp TCCCTTCEEEETTTTBTTHHHHHHHHHHTT--CEEEEEESSHHHHHHHH----HTTCSEE--EETTTSCHHHHHHHHCTT
T ss_pred cCCCCCCEEEEeCCCcHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHH----HcCCcEE--EecCChhHHHHHHHhcCC
Confidence 36789999999883 3 3445555665553 48999999999887764 3787643 333322221111 124
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
.+|+|+- |+|. ..+..+++++ ++||++|...
T Consensus 231 g~D~vid---~~g~--------------------------~~~~~~~~~l----~~~G~iv~~g 261 (362)
T 2c0c_A 231 GVDVVYE---SVGG--------------------------AMFDLAVDAL----ATKGRLIVIG 261 (362)
T ss_dssp CEEEEEE---CSCT--------------------------HHHHHHHHHE----EEEEEEEECC
T ss_pred CCCEEEE---CCCH--------------------------HHHHHHHHHH----hcCCEEEEEe
Confidence 6999875 3331 1255677776 8999987643
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=89.25 E-value=3.5 Score=38.99 Aligned_cols=79 Identities=10% Similarity=0.087 Sum_probs=54.7
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CC-
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL- 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~- 247 (496)
.|.+||=.| |+||.+.+++..+-. ...|++++.+..++..+...+...|. ++.++..|..+.... + ..
T Consensus 8 ~~k~vlVTG-as~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (260)
T 2ae2_A 8 EGCTALVTG-GSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGF-KVEASVCDLSSRSERQELMNTVANHFH 85 (260)
T ss_dssp TTCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 356777554 568888888775533 34899999999998888777766653 567778888764221 1 01
Q ss_pred CCcCEEEECCC
Q 010971 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~fD~VLlDaP 258 (496)
+.+|.|+..|-
T Consensus 86 g~id~lv~~Ag 96 (260)
T 2ae2_A 86 GKLNILVNNAG 96 (260)
T ss_dssp TCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 57999998764
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.23 E-value=3.4 Score=39.93 Aligned_cols=80 Identities=11% Similarity=0.033 Sum_probs=55.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.| |.||.+.+++..+- ....|+.+|.+..+++.+.+.+...+-..+.++..|..+..... ..+
T Consensus 32 ~gk~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 110 (281)
T 4dry_A 32 EGRIALVTG-GGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFA 110 (281)
T ss_dssp --CEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 466777555 55788888887653 33589999999999998888887766555678888987643211 115
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
.+|.++..|-
T Consensus 111 ~iD~lvnnAG 120 (281)
T 4dry_A 111 RLDLLVNNAG 120 (281)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 7899998664
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=89.22 E-value=1 Score=44.90 Aligned_cols=98 Identities=13% Similarity=0.158 Sum_probs=58.9
Q ss_pred CCCCCCeEeeccCC--CchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC----ccccCCC
Q 010971 175 APQEKERVIDMAAA--PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL----PKVLGLN 248 (496)
Q Consensus 175 ~~~~g~~VLDmcAg--pGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~----~~~~~~~ 248 (496)
.+++|++||-.++| .|..+++++..+.+ ..|+++|.++.+++.++ .+|...+ +......+ ......+
T Consensus 167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~~G-a~Vi~~~~~~~~~~~~~----~~g~~~~--~~~~~~~~~~~~~~~~~~~ 239 (347)
T 1jvb_A 167 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAK----RAGADYV--INASMQDPLAEIRRITESK 239 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHH----HHTCSEE--EETTTSCHHHHHHHHTTTS
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHH----HhCCCEE--ecCCCccHHHHHHHHhcCC
Confidence 57899999999986 23334444444412 48999999999987663 4676533 22221221 1111114
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.+|+|+- |+|.. ..+..+++++ ++||++|..
T Consensus 240 ~~d~vi~---~~g~~-------------------------~~~~~~~~~l----~~~G~iv~~ 270 (347)
T 1jvb_A 240 GVDAVID---LNNSE-------------------------KTLSVYPKAL----AKQGKYVMV 270 (347)
T ss_dssp CEEEEEE---SCCCH-------------------------HHHTTGGGGE----EEEEEEEEC
T ss_pred CceEEEE---CCCCH-------------------------HHHHHHHHHH----hcCCEEEEE
Confidence 7999886 33321 1356666766 999998763
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=88.93 E-value=0.69 Score=48.24 Aligned_cols=52 Identities=13% Similarity=0.043 Sum_probs=36.7
Q ss_pred cCCCCCCeEeeccC-C-CchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeE
Q 010971 174 LAPQEKERVIDMAA-A-PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231 (496)
Q Consensus 174 L~~~~g~~VLDmcA-g-pGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv 231 (496)
..+++|++||=.+| | -|..++++|..++ ..|++++.++.+++.+ +.+|...+
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~G--a~vi~~~~~~~~~~~~----~~lGa~~v 277 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGG--ANPICVVSSPQKAEIC----RAMGAEAI 277 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHH----HHHTCCEE
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcC--CeEEEEECCHHHHHHH----HhhCCcEE
Confidence 35789999998876 3 3445555666553 4788899999998876 45787643
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=88.92 E-value=4.5 Score=38.28 Aligned_cols=79 Identities=11% Similarity=0.082 Sum_probs=56.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.| |+||.+.+++..+. ....|+.++.+..++..+...+...|. ++.++..|..+..... ..+
T Consensus 28 ~~k~vlITG-as~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g 105 (262)
T 3rkr_A 28 SGQVAVVTG-ASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGG-EAESHACDLSHSDAIAAFATGVLAAHG 105 (262)
T ss_dssp TTCEEEESS-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCC-ceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 466777555 56778888877653 334899999999999999888887764 5777888987643211 114
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
..|.|+..|-
T Consensus 106 ~id~lv~~Ag 115 (262)
T 3rkr_A 106 RCDVLVNNAG 115 (262)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 7899998664
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.92 E-value=4.8 Score=37.44 Aligned_cols=79 Identities=8% Similarity=0.084 Sum_probs=56.3
Q ss_pred CCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~ 249 (496)
|.+||=.| |+||.+.+++..+-. ...|++++.+...++.+...+...|. .+.++..|..+..... ..+.
T Consensus 5 ~k~vlITG-as~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (247)
T 3lyl_A 5 EKVALVTG-ASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGF-KARGLVLNISDIESIQNFFAEIKAENLA 82 (247)
T ss_dssp TCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 55666555 567888887776543 34899999999999999888888765 4777788887642211 1257
Q ss_pred cCEEEECCCC
Q 010971 250 VDRVLLDAPC 259 (496)
Q Consensus 250 fD~VLlDaPC 259 (496)
+|.|+..|--
T Consensus 83 id~li~~Ag~ 92 (247)
T 3lyl_A 83 IDILVNNAGI 92 (247)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCCC
Confidence 8999987643
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=88.90 E-value=4.3 Score=38.00 Aligned_cols=79 Identities=16% Similarity=0.191 Sum_probs=54.1
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeC-CHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~-s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~ 247 (496)
.|.+||=.| |+|+.+.+++..+- ....|++++. +...+..+...+...+. ++.++..|..+.... + ..
T Consensus 6 ~~k~vlITG-asggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (261)
T 1gee_A 6 EGKVVVITG-SSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGG-EAIAVKGDVTVESDVINLVQSAIKEF 83 (261)
T ss_dssp TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 356677555 56888888877553 3358999999 88888888777776653 567778888764321 1 01
Q ss_pred CCcCEEEECCC
Q 010971 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~fD~VLlDaP 258 (496)
+.+|.|+..|-
T Consensus 84 g~id~li~~Ag 94 (261)
T 1gee_A 84 GKLDVMINNAG 94 (261)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 37899998664
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.83 E-value=4.8 Score=37.42 Aligned_cols=128 Identities=12% Similarity=0.127 Sum_probs=75.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCC--CCCccc---c-----C
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG--NELPKV---L-----G 246 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~--~~~~~~---~-----~ 246 (496)
.|.+||=.| |+||.+.+++..+-. ...|+.++.+..+++.+.+.+...+..++.++..|. .+.... . .
T Consensus 13 ~~k~vlITG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~ 91 (247)
T 3i1j_A 13 KGRVILVTG-AARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE 91 (247)
T ss_dssp TTCEEEESS-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence 466777555 567888888776543 348999999999999999999888866666666665 432111 0 1
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHH----HHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC----SYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l----~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.+.+|.|+..|-..+.. .| ....+.++.... ..-...++..++..+.. ..+|.||+.+.+
T Consensus 92 ~g~id~lv~nAg~~~~~----~~--~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~~~~~iv~isS~ 155 (247)
T 3i1j_A 92 FGRLDGLLHNASIIGPR----TP--LEQLPDEDFMQVMHVNVNATFMLTRALLPLLKR--SEDASIAFTSSS 155 (247)
T ss_dssp HSCCSEEEECCCCCCCC----SC--GGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--SSSEEEEEECCG
T ss_pred CCCCCEEEECCccCCCC----CC--cccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh--CCCCeEEEEcch
Confidence 14799999876543211 00 112233333222 22233455555555411 346788886543
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=88.81 E-value=4.5 Score=38.49 Aligned_cols=81 Identities=9% Similarity=0.014 Sum_probs=55.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccc---c-CCCCcC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKV---L-GLNTVD 251 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~---~-~~~~fD 251 (496)
.|.+||=.| |.||.+.+++..+- ....|+.+|.+...+..+.+.+...+. ..+.++..|..+.... . ..+..|
T Consensus 9 ~~k~~lVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id 87 (267)
T 3t4x_A 9 KGKTALVTG-STAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD 87 (267)
T ss_dssp TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence 356777555 55778888877553 334899999999999888888877653 3466777887763211 1 125799
Q ss_pred EEEECCCC
Q 010971 252 RVLLDAPC 259 (496)
Q Consensus 252 ~VLlDaPC 259 (496)
.++..|-.
T Consensus 88 ~lv~nAg~ 95 (267)
T 3t4x_A 88 ILINNLGI 95 (267)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99987643
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=88.71 E-value=0.47 Score=47.35 Aligned_cols=98 Identities=18% Similarity=0.173 Sum_probs=58.5
Q ss_pred hcCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc---CCC
Q 010971 173 ALAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---GLN 248 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~---~~~ 248 (496)
.+.+ +|++||-.+||+ |..++++|..++ .+.|++.|.++.+++.+++ + ... ++..+...+.... ...
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~G-a~~Vi~~~~~~~~~~~~~~----l-a~~--v~~~~~~~~~~~~~~~~~~ 230 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASG-AGPILVSDPNPYRLAFARP----Y-ADR--LVNPLEEDLLEVVRRVTGS 230 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTT-CCSEEEECSCHHHHGGGTT----T-CSE--EECTTTSCHHHHHHHHHSS
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----h-HHh--ccCcCccCHHHHHHHhcCC
Confidence 3457 999999999843 333444555442 2379999999998876643 3 332 2333222221111 024
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.||+||- |+|. ...+..+++++ ++||++|..
T Consensus 231 g~D~vid---~~g~-------------------------~~~~~~~~~~l----~~~G~iv~~ 261 (343)
T 2dq4_A 231 GVEVLLE---FSGN-------------------------EAAIHQGLMAL----IPGGEARIL 261 (343)
T ss_dssp CEEEEEE---CSCC-------------------------HHHHHHHHHHE----EEEEEEEEC
T ss_pred CCCEEEE---CCCC-------------------------HHHHHHHHHHH----hcCCEEEEE
Confidence 7999975 3332 12356777776 999998764
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=88.62 E-value=3 Score=39.22 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=54.3
Q ss_pred CCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~ 249 (496)
|.+||=.| |+||.+.+++..+-. ...|++++.+..+++.+.+.+...|. ++.++..|..+..... ..+.
T Consensus 7 ~k~~lVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 84 (247)
T 2jah_A 7 GKVALITG-ASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGA-KVHVLELDVADRQGVDAAVASTVEALGG 84 (247)
T ss_dssp TCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 55666555 567888888776543 34899999999999888888876654 5677788887642210 0147
Q ss_pred cCEEEECCC
Q 010971 250 VDRVLLDAP 258 (496)
Q Consensus 250 fD~VLlDaP 258 (496)
+|.|+..|-
T Consensus 85 id~lv~nAg 93 (247)
T 2jah_A 85 LDILVNNAG 93 (247)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCC
Confidence 999998664
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=88.56 E-value=1.1 Score=44.01 Aligned_cols=95 Identities=13% Similarity=0.139 Sum_probs=57.6
Q ss_pred CCCCC-eEeeccC--CCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE
Q 010971 176 PQEKE-RVIDMAA--APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 176 ~~~g~-~VLDmcA--gpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
+++++ +||=.+| +.|..++++|..++ ..|++++.++.+++.++ .+|.+.+.- ..|.... ..+..+.+|+
T Consensus 143 ~~~~~g~VlV~Ga~G~vG~~aiqla~~~G--a~Vi~~~~~~~~~~~~~----~lGa~~vi~-~~~~~~~-~~~~~~~~d~ 214 (324)
T 3nx4_A 143 IRPQDGEVVVTGASGGVGSTAVALLHKLG--YQVAAVSGRESTHGYLK----SLGANRILS-RDEFAES-RPLEKQLWAG 214 (324)
T ss_dssp CCGGGCCEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCGGGHHHHH----HHTCSEEEE-GGGSSCC-CSSCCCCEEE
T ss_pred cCCCCCeEEEECCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH----hcCCCEEEe-cCCHHHH-HhhcCCCccE
Confidence 45532 4887765 33555566666653 48999999999988775 478765432 1221111 1122357998
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
||- |+|. ..+..+++++ ++||++|..
T Consensus 215 v~d---~~g~--------------------------~~~~~~~~~l----~~~G~iv~~ 240 (324)
T 3nx4_A 215 AID---TVGD--------------------------KVLAKVLAQM----NYGGCVAAC 240 (324)
T ss_dssp EEE---SSCH--------------------------HHHHHHHHTE----EEEEEEEEC
T ss_pred EEE---CCCc--------------------------HHHHHHHHHH----hcCCEEEEE
Confidence 764 3321 1367778887 999999864
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.50 E-value=3.9 Score=38.96 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=56.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccc---c-----CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~---~-----~~ 247 (496)
.|.+||=.| |+|+.+.+++..+.. ...|++++.+..++..+...+...|.. .+.++..|..+.... + ..
T Consensus 31 ~~k~vlVTG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 109 (279)
T 1xg5_A 31 RDRLALVTG-ASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 109 (279)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence 356677554 668888888875533 348999999999999888888877753 577788898764321 1 01
Q ss_pred CCcCEEEECCC
Q 010971 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~fD~VLlDaP 258 (496)
+.+|.|+..|-
T Consensus 110 g~iD~vi~~Ag 120 (279)
T 1xg5_A 110 SGVDICINNAG 120 (279)
T ss_dssp CCCSEEEECCC
T ss_pred CCCCEEEECCC
Confidence 47999988653
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.45 E-value=3.4 Score=40.23 Aligned_cols=127 Identities=16% Similarity=0.151 Sum_probs=74.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEecCCCCCccc---c-----C
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVT--NTIVCNYDGNELPKV---L-----G 246 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~--nv~v~~~D~~~~~~~---~-----~ 246 (496)
.|.+||=.| |+||.+.+++..+- ....|++++.+..+++.+...+...|.. ++.++..|..+.... + .
T Consensus 25 ~~k~vlVTG-as~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 103 (297)
T 1xhl_A 25 SGKSVIITG-SSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 103 (297)
T ss_dssp TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence 356677555 56788888887654 3348999999999998888888776642 577788898764321 1 0
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~----~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
.+.+|.|+..|-....+ |......+.++..... .-...++..++..+. +.+|.||+.+.
T Consensus 104 ~g~iD~lvnnAG~~~~~-----~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~---~~~g~IV~isS 166 (297)
T 1xhl_A 104 FGKIDILVNNAGANLAD-----GTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLI---KTKGEIVNVSS 166 (297)
T ss_dssp HSCCCEEEECCCCCCCC-----SCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHH---HTTCEEEEECC
T ss_pred cCCCCEEEECCCcCcCC-----CCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHH---hcCCEEEEEcC
Confidence 14789999876432221 2111223333333221 222334555555441 34588887654
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=88.44 E-value=2.9 Score=39.58 Aligned_cols=124 Identities=14% Similarity=0.164 Sum_probs=74.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.| |.||.+.+++..+-. ...|+.+|.+...++.+...+...|. ++.++..|..+..... ..+
T Consensus 11 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 88 (256)
T 3gaf_A 11 NDAVAIVTG-AAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGG-KAIGLECNVTDEQHREAVIKAALDQFG 88 (256)
T ss_dssp TTCEEEECS-CSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 356666555 557788877765533 34899999999999999888887764 5677788887642211 114
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHH----HHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC----SYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l----~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
..|.++..|--+..+.+ ..+.++.... ..-...++..++..+.. ..+|.||+.+.
T Consensus 89 ~id~lv~nAg~~~~~~~--------~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~--~~~g~iv~isS 147 (256)
T 3gaf_A 89 KITVLVNNAGGGGPKPF--------DMPMSDFEWAFKLNLFSLFRLSQLAAPHMQK--AGGGAILNISS 147 (256)
T ss_dssp CCCEEEECCCCCCCCCT--------TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH--TTCEEEEEECC
T ss_pred CCCEEEECCCCCCCCCC--------CCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh--cCCcEEEEEcC
Confidence 78999987643332222 2333333322 12223345555544311 34688887654
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=88.31 E-value=0.28 Score=47.98 Aligned_cols=92 Identities=23% Similarity=0.317 Sum_probs=58.2
Q ss_pred CCCCCeEeeccC-C-CchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCC-CCCccccCCCCcCE
Q 010971 176 PQEKERVIDMAA-A-PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDR 252 (496)
Q Consensus 176 ~~~g~~VLDmcA-g-pGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~-~~~~~~~~~~~fD~ 252 (496)
+++|++||-.|| | .|..+++++..++ ..|+++|.++.+++.++ .+|...+ +..+. ..+.... ..||.
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~----~~ga~~~--~~~~~~~~~~~~~--~~~d~ 192 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPL----ALGAEEA--ATYAEVPERAKAW--GGLDL 192 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHH----HTTCSEE--EEGGGHHHHHHHT--TSEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH----hcCCCEE--EECCcchhHHHHh--cCceE
Confidence 789999999886 2 2444455555543 48999999999887663 4787643 22221 1222222 57999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
|+- +. + . .+..+++++ ++||++|..
T Consensus 193 vid-~g--~-~--------------------------~~~~~~~~l----~~~G~~v~~ 217 (302)
T 1iz0_A 193 VLE-VR--G-K--------------------------EVEESLGLL----AHGGRLVYI 217 (302)
T ss_dssp EEE-CS--C-T--------------------------THHHHHTTE----EEEEEEEEC
T ss_pred EEE-CC--H-H--------------------------HHHHHHHhh----ccCCEEEEE
Confidence 876 43 1 0 156677776 999998753
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.30 E-value=1.5 Score=43.26 Aligned_cols=98 Identities=20% Similarity=0.191 Sum_probs=58.7
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc----cccCCC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGLN 248 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~----~~~~~~ 248 (496)
..+++|++||-.+++ |+.+..++++... ...|+++|.++.+++.+.+ +|...+ +..+-..+. ......
T Consensus 136 ~~~~~g~~vlV~Ga~-ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~----~g~~~~--~~~~~~~~~~~~~~~~~~~ 208 (327)
T 1qor_A 136 YEIKPDEQFLFHAAA-GGVGLIACQWAKALGAKLIGTVGTAQKAQSALK----AGAWQV--INYREEDLVERLKEITGGK 208 (327)
T ss_dssp SCCCTTCEEEESSTT-BHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTCSEE--EETTTSCHHHHHHHHTTTC
T ss_pred hCCCCCCEEEEECCC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCCEE--EECCCccHHHHHHHHhCCC
Confidence 357889999988743 4444444443321 2489999999998877654 576532 222212221 111124
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.+|+|+- |+| +- .+..+++++ ++||++|..
T Consensus 209 ~~D~vi~---~~g-~~-------------------------~~~~~~~~l----~~~G~iv~~ 238 (327)
T 1qor_A 209 KVRVVYD---SVG-RD-------------------------TWERSLDCL----QRRGLMVSF 238 (327)
T ss_dssp CEEEEEE---CSC-GG-------------------------GHHHHHHTE----EEEEEEEEC
T ss_pred CceEEEE---CCc-hH-------------------------HHHHHHHHh----cCCCEEEEE
Confidence 6999986 344 21 256677776 999998754
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=88.28 E-value=0.54 Score=47.38 Aligned_cols=91 Identities=12% Similarity=0.127 Sum_probs=55.7
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCH---HHHHHHHHHHHHcCCCeEEEEecCCCCCccccC--CCCcCE
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKA---SRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG--LNTVDR 252 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~---~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~--~~~fD~ 252 (496)
|++||-.+| |+.++.++++.... ..|+++|.++ .+++.+ +.+|.+.+ ..+ .+..... ...||+
T Consensus 181 g~~VlV~Ga--G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~----~~~ga~~v---~~~--~~~~~~~~~~~~~d~ 249 (366)
T 2cdc_A 181 CRKVLVVGT--GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVI----EETKTNYY---NSS--NGYDKLKDSVGKFDV 249 (366)
T ss_dssp TCEEEEESC--HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHH----HHHTCEEE---ECT--TCSHHHHHHHCCEEE
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHH----HHhCCcee---chH--HHHHHHHHhCCCCCE
Confidence 999999997 66665554443321 3899999998 777554 34677543 222 2221110 146999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHH-HHHHHhhhhcCCCCcEEEEEe
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLI-LAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL-~~A~~~l~~~lkpGG~LVYST 312 (496)
|+- |+|... .+ ..+++++ ++||++|...
T Consensus 250 vid---~~g~~~-------------------------~~~~~~~~~l----~~~G~iv~~g 278 (366)
T 2cdc_A 250 IID---ATGADV-------------------------NILGNVIPLL----GRNGVLGLFG 278 (366)
T ss_dssp EEE---CCCCCT-------------------------HHHHHHGGGE----EEEEEEEECS
T ss_pred EEE---CCCChH-------------------------HHHHHHHHHH----hcCCEEEEEe
Confidence 986 444310 24 6677776 9999987643
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=88.22 E-value=8.2 Score=36.56 Aligned_cols=79 Identities=11% Similarity=0.095 Sum_probs=54.4
Q ss_pred CCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeC-CHHHHHHHHHHHHHc-CCCeEEEEecCCCCC----cccc------
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEM-KASRLKSLTANLHRM-GVTNTIVCNYDGNEL----PKVL------ 245 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~-s~~rl~~l~~nl~r~-g~~nv~v~~~D~~~~----~~~~------ 245 (496)
|.+|| +.-|+||.+.+++..+-. ...|++++. +..+++.+.+.+... | .++.++..|..+. ....
T Consensus 11 ~k~~l-VTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 88 (276)
T 1mxh_A 11 CPAAV-ITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARA-GSAVLCKGDLSLSSSLLDCCEDIIDCS 88 (276)
T ss_dssp CCEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSSSTTHHHHHHHHHHHH
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcC-CceEEEeccCCCccccHHHHHHHHHHH
Confidence 55677 445668888888876543 348999999 999888887777665 4 3577778888765 2211
Q ss_pred --CCCCcCEEEECCCC
Q 010971 246 --GLNTVDRVLLDAPC 259 (496)
Q Consensus 246 --~~~~fD~VLlDaPC 259 (496)
..+.+|.|+..|-.
T Consensus 89 ~~~~g~id~lv~nAg~ 104 (276)
T 1mxh_A 89 FRAFGRCDVLVNNASA 104 (276)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHhcCCCCEEEECCCC
Confidence 01478999987643
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=88.18 E-value=2.4 Score=41.84 Aligned_cols=97 Identities=16% Similarity=0.202 Sum_probs=59.1
Q ss_pred cCCCCCCeEeeccC--CCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc----cccCC
Q 010971 174 LAPQEKERVIDMAA--APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGL 247 (496)
Q Consensus 174 L~~~~g~~VLDmcA--gpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~----~~~~~ 247 (496)
..+++|++||-.+| |-|..+..++..++ ..|+++|.++.+++.+++ +|...+ +..+...+. .....
T Consensus 141 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--~~Vi~~~~~~~~~~~~~~----~g~~~~--~d~~~~~~~~~i~~~~~~ 212 (333)
T 1wly_A 141 HKVKPGDYVLIHAAAGGMGHIMVPWARHLG--ATVIGTVSTEEKAETARK----LGCHHT--INYSTQDFAEVVREITGG 212 (333)
T ss_dssp SCCCTTCEEEETTTTSTTHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----HTCSEE--EETTTSCHHHHHHHHHTT
T ss_pred hCCCCCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCCEE--EECCCHHHHHHHHHHhCC
Confidence 35789999998875 33444444444442 489999999988887643 576532 232222221 11112
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
..+|.|+- |+|.. .+..+++++ ++||++|..
T Consensus 213 ~~~d~vi~---~~g~~--------------------------~~~~~~~~l----~~~G~iv~~ 243 (333)
T 1wly_A 213 KGVDVVYD---SIGKD--------------------------TLQKSLDCL----RPRGMCAAY 243 (333)
T ss_dssp CCEEEEEE---CSCTT--------------------------THHHHHHTE----EEEEEEEEC
T ss_pred CCCeEEEE---CCcHH--------------------------HHHHHHHhh----ccCCEEEEE
Confidence 46999986 44321 256677776 999988753
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.98 E-value=3 Score=39.77 Aligned_cols=121 Identities=14% Similarity=0.139 Sum_probs=73.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCC------------HHHHHHHHHHHHHcCCCeEEEEecCCCCCccc
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMK------------ASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s------------~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~ 244 (496)
.|.+||=.| |.||.+.+++..+-. ...|+.+|.+ ...+..+...+...|. ++.++..|..+....
T Consensus 9 ~gk~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v 86 (287)
T 3pxx_A 9 QDKVVLVTG-GARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGR-KAYTAEVDVRDRAAV 86 (287)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTS-CEEEEECCTTCHHHH
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCC-ceEEEEccCCCHHHH
Confidence 466777555 557788887775543 3489999987 8888888888877764 577788898764321
Q ss_pred c--------CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 245 L--------GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 245 ~--------~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~----~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
. ..+..|.|+..|-....+ . ..+.++..... .-...++..++.. ++.+|.||+.+
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~-----~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~----~~~~g~iv~is 153 (287)
T 3pxx_A 87 SRELANAVAEFGKLDVVVANAGICPLG-----A----HLPVQAFADAFDVDFVGVINTVHAALPY----LTSGASIITTG 153 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCC-----T----TCCTHHHHHHHHHHTHHHHHHHHHHGGG----CCTTCEEEEEC
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCccc-----C----cCCHHHHHHHhhhhhhhhHHHHHHHHHH----hhcCcEEEEec
Confidence 1 114799999876433322 1 12233332222 2223344445444 47889988865
Q ss_pred C
Q 010971 313 C 313 (496)
Q Consensus 313 C 313 (496)
.
T Consensus 154 S 154 (287)
T 3pxx_A 154 S 154 (287)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.88 E-value=5 Score=37.39 Aligned_cols=79 Identities=16% Similarity=0.173 Sum_probs=52.1
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-CCCCcC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-GLNTVD 251 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-~~~~fD 251 (496)
.++.+||=.| |+||.+.+++..+.. ...|+.++.+..+++.+.+.+. .++.+...|....... + ..+.+|
T Consensus 12 ~~~k~vlVTG-as~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~id 86 (249)
T 3f9i_A 12 LTGKTSLITG-ASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK----DNYTIEVCNLANKEECSNLISKTSNLD 86 (249)
T ss_dssp CTTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC----SSEEEEECCTTSHHHHHHHHHTCSCCS
T ss_pred CCCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc----cCccEEEcCCCCHHHHHHHHHhcCCCC
Confidence 3567788555 567788888776543 3489999999998887766553 3567777887764211 1 124799
Q ss_pred EEEECCCCC
Q 010971 252 RVLLDAPCS 260 (496)
Q Consensus 252 ~VLlDaPCS 260 (496)
.|+..|-..
T Consensus 87 ~li~~Ag~~ 95 (249)
T 3f9i_A 87 ILVCNAGIT 95 (249)
T ss_dssp EEEECCC--
T ss_pred EEEECCCCC
Confidence 999876543
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=87.83 E-value=3.5 Score=38.08 Aligned_cols=78 Identities=18% Similarity=0.179 Sum_probs=53.2
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHH-HcCCCeEEEEecCCCCCccc---cC-----CC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLH-RMGVTNTIVCNYDGNELPKV---LG-----LN 248 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~-r~g~~nv~v~~~D~~~~~~~---~~-----~~ 248 (496)
+.+||=. -|+||.+.+++..+... ..|+.++.+..++..+...+. ..| .++.++..|..+.... +. .+
T Consensus 2 ~k~vlIT-Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (235)
T 3l77_A 2 MKVAVIT-GASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQG-VEVFYHHLDVSKAESVEEFSKKVLERFG 79 (235)
T ss_dssp CCEEEEE-SCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred CCEEEEE-CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-CeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 3455544 45678888888765433 489999999999988888776 444 3577788888764221 10 14
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
.+|.++..|-
T Consensus 80 ~id~li~~Ag 89 (235)
T 3l77_A 80 DVDVVVANAG 89 (235)
T ss_dssp SCSEEEECCC
T ss_pred CCCEEEECCc
Confidence 7899998664
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=87.53 E-value=4.8 Score=38.51 Aligned_cols=80 Identities=11% Similarity=0.022 Sum_probs=57.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEecCCCCCcccc--------C
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVT--NTIVCNYDGNELPKVL--------G 246 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~--nv~v~~~D~~~~~~~~--------~ 246 (496)
.|.+||=.| |.||.+.+++..+- ....|+.+|.+...+..+.+.+...+.. .+.++..|..+..... .
T Consensus 10 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 88 (281)
T 3svt_A 10 QDRTYLVTG-GGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW 88 (281)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 356677555 56778888877553 3348999999999999999888887753 5778888987643211 1
Q ss_pred CCCcCEEEECCC
Q 010971 247 LNTVDRVLLDAP 258 (496)
Q Consensus 247 ~~~fD~VLlDaP 258 (496)
.+.+|.++..|-
T Consensus 89 ~g~id~lv~nAg 100 (281)
T 3svt_A 89 HGRLHGVVHCAG 100 (281)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 147899998664
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=87.50 E-value=4.2 Score=38.74 Aligned_cols=80 Identities=16% Similarity=0.141 Sum_probs=55.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHH-cCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHR-MGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r-~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|.+||=.| |.||.+.+++..+-. ...|+.++.+...+..+...+.. .+. .+.++..|..+..... ..
T Consensus 19 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 96 (266)
T 4egf_A 19 DGKRALITG-ATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGT-DVHTVAIDLAEPDAPAELARRAAEAF 96 (266)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 466777555 557788887776533 34899999999999888887766 443 5777888987753211 11
Q ss_pred CCcCEEEECCCC
Q 010971 248 NTVDRVLLDAPC 259 (496)
Q Consensus 248 ~~fD~VLlDaPC 259 (496)
+..|.++..|--
T Consensus 97 g~id~lv~nAg~ 108 (266)
T 4egf_A 97 GGLDVLVNNAGI 108 (266)
T ss_dssp TSCSEEEEECCC
T ss_pred CCCCEEEECCCc
Confidence 479999987643
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=87.43 E-value=6 Score=37.65 Aligned_cols=125 Identities=13% Similarity=0.200 Sum_probs=74.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeC-CHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~-s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|.+||=.| |.||.+.+++..+-.. ..|+.++. +...++.+.+.+...|. ++.++..|..+..... ..
T Consensus 17 ~~k~~lVTG-as~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 94 (270)
T 3is3_A 17 DGKVALVTG-SGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGS-DAIAIKADIRQVPEIVKLFDQAVAHF 94 (270)
T ss_dssp TTCEEEESC-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 466777555 5577788877765433 46777665 67778888888887764 4667788887643211 11
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~----~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
+..|.++..|--...+.+ ...+.++..... .-...++..++..+ +.+|.||+.+.+.
T Consensus 95 g~id~lvnnAg~~~~~~~-------~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~----~~~g~iv~isS~~ 155 (270)
T 3is3_A 95 GHLDIAVSNSGVVSFGHL-------KDVTEEEFDRVFSLNTRGQFFVAREAYRHL----TEGGRIVLTSSNT 155 (270)
T ss_dssp SCCCEEECCCCCCCCCCG-------GGCCHHHHHHHHHHHTHHHHHHHHHHHHHC----CTTCEEEEECCTT
T ss_pred CCCCEEEECCCCCCCCCc-------ccCCHHHHHHHHHHHhHHHHHHHHHHHHHH----hcCCeEEEEeCch
Confidence 478999886643322221 223444433222 22334556666654 7789988865543
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=87.43 E-value=2.5 Score=44.20 Aligned_cols=117 Identities=10% Similarity=0.159 Sum_probs=67.2
Q ss_pred CCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHH------------HHHc-CCCeEEEEecCCCCCccccCCCCcCEE
Q 010971 188 APGGKTTYIAALMKNTG-LIYANEMKASRLKSLTAN------------LHRM-GVTNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 188 gpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~n------------l~r~-g~~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
|.|..++.+|..+...| .|+++|+++++++.+.+. +++. .-.++.+. .|. ...|+|
T Consensus 18 GlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~t-td~---------~~aDvv 87 (431)
T 3ojo_A 18 GLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVS-TTP---------EASDVF 87 (431)
T ss_dssp CCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE-SSC---------CCCSEE
T ss_pred eeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEe-Cch---------hhCCEE
Confidence 55666666666654444 899999999999998763 1110 01233333 231 357999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~ 332 (496)
++=.|-....--...|++.. +..+.+.+.+.+++|..+|+. .|+.|.-.+.+...+++..+
T Consensus 88 ii~VpTp~~~~~~~~~Dl~~-----------------V~~~~~~i~~~l~~g~iVV~~-STV~pgtt~~v~~~i~e~~g 148 (431)
T 3ojo_A 88 IIAVPTPNNDDQYRSCDISL-----------------VMRALDSILPFLKKGNTIIVE-STIAPKTMDDFVKPVIENLG 148 (431)
T ss_dssp EECCCCCBCSSSSCBBCCHH-----------------HHHHHHHHGGGCCTTEEEEEC-SCCCTTHHHHTHHHHHHTTT
T ss_pred EEEeCCCccccccCCccHHH-----------------HHHHHHHHHHhCCCCCEEEEe-cCCChhHHHHHHHHHHHHcC
Confidence 99555321100002333321 233334444456887766654 48888888888888877543
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.39 E-value=0.48 Score=47.31 Aligned_cols=98 Identities=14% Similarity=0.064 Sum_probs=57.7
Q ss_pred CCCCCCeEeeccCC--CchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecC-CCCCcccc---CCC
Q 010971 175 APQEKERVIDMAAA--PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD-GNELPKVL---GLN 248 (496)
Q Consensus 175 ~~~~g~~VLDmcAg--pGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D-~~~~~~~~---~~~ 248 (496)
.+++|++||-.+|+ .|..+..++..++ ..|+++|.++.+++.++ .+|...+ +... ...+.... ..+
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--a~V~~~~~~~~~~~~~~----~~g~~~~--~d~~~~~~~~~~~~~~~~~ 237 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAMG--YRVLGIDGGEGKEELFR----SIGGEVF--IDFTKEKDIVGAVLKATDG 237 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECSTTHHHHHH----HTTCCEE--EETTTCSCHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCC--CcEEEEcCCHHHHHHHH----HcCCceE--EecCccHhHHHHHHHHhCC
Confidence 57899999999973 3333344444332 48999999988876553 4676532 2221 22221111 012
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
.+|+|+.. +|. ...+..+++++ ++||+||...
T Consensus 238 ~~D~vi~~---~g~-------------------------~~~~~~~~~~l----~~~G~iv~~g 269 (347)
T 2hcy_A 238 GAHGVINV---SVS-------------------------EAAIEASTRYV----RANGTTVLVG 269 (347)
T ss_dssp CEEEEEEC---SSC-------------------------HHHHHHHTTSE----EEEEEEEECC
T ss_pred CCCEEEEC---CCc-------------------------HHHHHHHHHHH----hcCCEEEEEe
Confidence 79998763 331 01366677776 9999987643
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=87.38 E-value=2.7 Score=39.82 Aligned_cols=81 Identities=14% Similarity=0.160 Sum_probs=56.7
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc-------CCCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------GLNT 249 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~-------~~~~ 249 (496)
.|.+||=.| |+||.+.+++..+-. ...|+.+|.+..+++.+...+...|. ++.++..|..+..... ..+.
T Consensus 6 ~~k~vlVTG-as~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~g~ 83 (252)
T 3h7a_A 6 RNATVAVIG-AGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGG-RIVARSLDARNEDEVTAFLNAADAHAP 83 (252)
T ss_dssp CSCEEEEEC-CSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECcCCCHHHHHHHHHHHHhhCC
Confidence 355666555 557788887776543 34899999999999999998888764 6778888987643211 0147
Q ss_pred cCEEEECCCCC
Q 010971 250 VDRVLLDAPCS 260 (496)
Q Consensus 250 fD~VLlDaPCS 260 (496)
.|.++..|-..
T Consensus 84 id~lv~nAg~~ 94 (252)
T 3h7a_A 84 LEVTIFNVGAN 94 (252)
T ss_dssp EEEEEECCCCC
T ss_pred ceEEEECCCcC
Confidence 89999876443
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.36 E-value=5.2 Score=37.61 Aligned_cols=77 Identities=14% Similarity=0.176 Sum_probs=52.9
Q ss_pred CeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCCc
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNTV 250 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~f 250 (496)
.+||=. -|+||.+.+++..+.. ...|++++.+..++..+.+.+...|. ++.++..|..+.... + ..+.+
T Consensus 3 k~vlVT-Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 80 (256)
T 1geg_A 3 KVALVT-GAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG-HAVAVKVDVSDRDQVFAAVEQARKTLGGF 80 (256)
T ss_dssp CEEEEE-TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEE-CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 345544 4667888888876543 34899999999998888877776654 466777888764221 1 12479
Q ss_pred CEEEECCC
Q 010971 251 DRVLLDAP 258 (496)
Q Consensus 251 D~VLlDaP 258 (496)
|.|+..|-
T Consensus 81 d~lv~nAg 88 (256)
T 1geg_A 81 DVIVNNAG 88 (256)
T ss_dssp CEEEECCC
T ss_pred CEEEECCC
Confidence 99998764
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.26 E-value=6.5 Score=37.64 Aligned_cols=80 Identities=14% Similarity=0.114 Sum_probs=55.1
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.| |+||.+.+++..+...| .|++++.++..+..+.+.+...+. ++.++..|..+..... ..+
T Consensus 43 ~~k~vlITG-asggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~~ 120 (285)
T 2c07_A 43 ENKVALVTG-AGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKKEEISEVINKILTEHK 120 (285)
T ss_dssp SSCEEEEES-TTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC-ceeEEECCCCCHHHHHHHHHHHHHhcC
Confidence 356677555 56888888887765444 788899899888888777766554 4667778887642211 124
Q ss_pred CcCEEEECCCC
Q 010971 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~fD~VLlDaPC 259 (496)
.+|.|+..|--
T Consensus 121 ~id~li~~Ag~ 131 (285)
T 2c07_A 121 NVDILVNNAGI 131 (285)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 78999986643
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=87.19 E-value=0.2 Score=50.44 Aligned_cols=68 Identities=15% Similarity=0.062 Sum_probs=40.7
Q ss_pred EEEE-ecCCCCCccccCCCCcCEEEECCCCCCC-CcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEE
Q 010971 231 TIVC-NYDGNELPKVLGLNTVDRVLLDAPCSGT-GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI 308 (496)
Q Consensus 231 v~v~-~~D~~~~~~~~~~~~fD~VLlDaPCSg~-G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~L 308 (496)
..++ ++|+..+...++.++||+|++|||+... +.+ .. ..........+|..+.++| +|||.|
T Consensus 39 ~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~--------~~----~~~~~~~~~~~l~~~~rvL----k~~G~i 102 (319)
T 1eg2_A 39 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADW--------DD----HMDYIGWAKRWLAEAERVL----SPTGSI 102 (319)
T ss_dssp EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGG--------GT----CSSHHHHHHHHHHHHHHHE----EEEEEE
T ss_pred ceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCc--------cC----HHHHHHHHHHHHHHHHHHc----CCCeEE
Confidence 4566 8998765444555789999999998432 111 10 0111122344566666665 999998
Q ss_pred EEEeCCC
Q 010971 309 VYSTCSI 315 (496)
Q Consensus 309 VYSTCSi 315 (496)
+.. |+.
T Consensus 103 ~i~-~~~ 108 (319)
T 1eg2_A 103 AIF-GGL 108 (319)
T ss_dssp EEE-ECS
T ss_pred EEE-cCc
Confidence 765 443
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.11 E-value=5.5 Score=38.27 Aligned_cols=80 Identities=14% Similarity=0.095 Sum_probs=54.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHc----CCCeEEEEecCCCCCccc---cC---
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRM----GVTNTIVCNYDGNELPKV---LG--- 246 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~----g~~nv~v~~~D~~~~~~~---~~--- 246 (496)
.|.+||=.| |+||.+.+++..+. ....|++++.+..++..+...+... .-.++.++..|..+.... +.
T Consensus 17 ~~k~vlVTG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 95 (303)
T 1yxm_A 17 QGQVAIVTG-GATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL 95 (303)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHH
Confidence 366777555 56888888887653 3348999999999988888777652 123577888898764221 10
Q ss_pred --CCCcCEEEECCC
Q 010971 247 --LNTVDRVLLDAP 258 (496)
Q Consensus 247 --~~~fD~VLlDaP 258 (496)
.+.+|.|+..|-
T Consensus 96 ~~~g~id~li~~Ag 109 (303)
T 1yxm_A 96 DTFGKINFLVNNGG 109 (303)
T ss_dssp HHHSCCCEEEECCC
T ss_pred HHcCCCCEEEECCC
Confidence 146999998664
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=87.04 E-value=6.5 Score=37.71 Aligned_cols=79 Identities=13% Similarity=0.067 Sum_probs=54.1
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRM-GVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~-g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|.+||=.| |+||.+.+++..+.. ...|++++.+..++..+...+... +. ++.++..|..+..... ..
T Consensus 25 ~~k~vlITG-asggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 102 (302)
T 1w6u_A 25 QGKVAFITG-GGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGN-KVHAIQCDVRDPDMVQNTVSELIKVA 102 (302)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSS-CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCC-ceEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 356677555 568888888876543 348999999999888877777654 43 5777888987642110 12
Q ss_pred CCcCEEEECCC
Q 010971 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~fD~VLlDaP 258 (496)
+.+|.|+..|-
T Consensus 103 g~id~li~~Ag 113 (302)
T 1w6u_A 103 GHPNIVINNAA 113 (302)
T ss_dssp CSCSEEEECCC
T ss_pred CCCCEEEECCC
Confidence 57899998664
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=86.99 E-value=2.7 Score=40.45 Aligned_cols=80 Identities=14% Similarity=0.156 Sum_probs=56.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.| |.||.+.+++..+-. ...|+.++.+..+++.+...+...|. ++.++..|..+..... ..+
T Consensus 31 ~gk~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~g 108 (276)
T 3r1i_A 31 SGKRALITG-ASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGG-KALPIRCDVTQPDQVRGMLDQMTGELG 108 (276)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 466777555 557888887776543 34899999999999998888887764 4667778887643211 114
Q ss_pred CcCEEEECCCC
Q 010971 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~fD~VLlDaPC 259 (496)
..|.++..|-.
T Consensus 109 ~iD~lvnnAg~ 119 (276)
T 3r1i_A 109 GIDIAVCNAGI 119 (276)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999987643
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=86.79 E-value=6.3 Score=36.37 Aligned_cols=78 Identities=18% Similarity=0.193 Sum_probs=52.5
Q ss_pred CeEeeccCCCchHHHHHHHHcCCC-cEEEE-EeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCC
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNT-GLIYA-NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A-~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~ 249 (496)
.+|| +.-|+|+.+.+++..+-.. ..|++ .+.+...+..+...+...+. ++.++..|..+.... + ..+.
T Consensus 2 k~vl-VTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (244)
T 1edo_A 2 PVVV-VTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGG-QAITFGGDVSKEADVEAMMKTAIDAWGT 79 (244)
T ss_dssp CEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTC-EEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred CEEE-EeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 3455 4456788898888765433 47777 48898888888777776654 577778888764321 1 1247
Q ss_pred cCEEEECCCC
Q 010971 250 VDRVLLDAPC 259 (496)
Q Consensus 250 fD~VLlDaPC 259 (496)
+|.|+..|-.
T Consensus 80 id~li~~Ag~ 89 (244)
T 1edo_A 80 IDVVVNNAGI 89 (244)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCCC
Confidence 8999986643
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.64 E-value=2.1 Score=42.91 Aligned_cols=99 Identities=14% Similarity=0.147 Sum_probs=58.5
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc----cccCCC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGLN 248 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~----~~~~~~ 248 (496)
..+++|++||-.+|+ |+.+..+++++.. ...|++.+.++.+++.+ +.+|...+ +..+-..+. ......
T Consensus 166 ~~~~~g~~vlV~Gas-ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~----~~~ga~~~--~d~~~~~~~~~~~~~~~~~ 238 (351)
T 1yb5_A 166 ACVKAGESVLVHGAS-GGVGLAACQIARAYGLKILGTAGTEEGQKIV----LQNGAHEV--FNHREVNYIDKIKKYVGEK 238 (351)
T ss_dssp SCCCTTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHH----HHTTCSEE--EETTSTTHHHHHHHHHCTT
T ss_pred hCCCCcCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCChhHHHHH----HHcCCCEE--EeCCCchHHHHHHHHcCCC
Confidence 357899999988862 4444444433321 24899999999988754 45676533 232222221 111224
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
.+|+|+-- +|. ..+..+++++ ++||++|...
T Consensus 239 ~~D~vi~~---~G~--------------------------~~~~~~~~~l----~~~G~iv~~g 269 (351)
T 1yb5_A 239 GIDIIIEM---LAN--------------------------VNLSKDLSLL----SHGGRVIVVG 269 (351)
T ss_dssp CEEEEEES---CHH--------------------------HHHHHHHHHE----EEEEEEEECC
T ss_pred CcEEEEEC---CCh--------------------------HHHHHHHHhc----cCCCEEEEEe
Confidence 79998752 220 1245667776 9999988644
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.62 E-value=4 Score=39.06 Aligned_cols=81 Identities=15% Similarity=0.140 Sum_probs=55.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEecCCCCCccc---c-----C
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVT--NTIVCNYDGNELPKV---L-----G 246 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~--nv~v~~~D~~~~~~~---~-----~ 246 (496)
.|.+||=.| |.||.+.+++..+-. ...|++++.+..++..+.+.+...|.. ++.++..|..+.... + .
T Consensus 5 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (280)
T 1xkq_A 5 SNKTVIITG-SSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ 83 (280)
T ss_dssp TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence 355666555 567788887775543 348999999999998888777766542 577788898764211 1 0
Q ss_pred CCCcCEEEECCCC
Q 010971 247 LNTVDRVLLDAPC 259 (496)
Q Consensus 247 ~~~fD~VLlDaPC 259 (496)
.+.+|.|+..|-.
T Consensus 84 ~g~iD~lv~nAg~ 96 (280)
T 1xkq_A 84 FGKIDVLVNNAGA 96 (280)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 1478999987643
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=86.55 E-value=1.9 Score=43.08 Aligned_cols=99 Identities=13% Similarity=0.093 Sum_probs=59.4
Q ss_pred cCCCCC--CeEeeccCCCchHHHHHHHHcCC-Cc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc---C
Q 010971 174 LAPQEK--ERVIDMAAAPGGKTTYIAALMKN-TG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---G 246 (496)
Q Consensus 174 L~~~~g--~~VLDmcAgpGgKT~~lA~l~~~-~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~---~ 246 (496)
..+++| ++||-.|| .|+.+..+++++.. .. .|+++|.++.+++.+.+ .+|...+ +..+-..+.... .
T Consensus 154 ~~~~~g~~~~vlI~Ga-sggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~---~~g~~~~--~d~~~~~~~~~~~~~~ 227 (357)
T 2zb4_A 154 GHITAGSNKTMVVSGA-AGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTS---ELGFDAA--INYKKDNVAEQLRESC 227 (357)
T ss_dssp SCCCTTSCCEEEESST-TBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH---TSCCSEE--EETTTSCHHHHHHHHC
T ss_pred cCCCCCCccEEEEECC-CcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH---HcCCceE--EecCchHHHHHHHHhc
Confidence 467889 99998876 35555554444332 23 89999999988876643 2676532 232222221111 1
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.+.+|+|+- |+|. ..+..+++++ ++||++|..
T Consensus 228 ~~~~d~vi~---~~G~--------------------------~~~~~~~~~l----~~~G~iv~~ 259 (357)
T 2zb4_A 228 PAGVDVYFD---NVGG--------------------------NISDTVISQM----NENSHIILC 259 (357)
T ss_dssp TTCEEEEEE---SCCH--------------------------HHHHHHHHTE----EEEEEEEEC
T ss_pred CCCCCEEEE---CCCH--------------------------HHHHHHHHHh----ccCcEEEEE
Confidence 126999876 3331 1356777876 999998864
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=86.49 E-value=3.9 Score=38.09 Aligned_cols=79 Identities=13% Similarity=0.073 Sum_probs=52.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeE-EEEecCCCCCcccc---C----CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNT-IVCNYDGNELPKVL---G----LN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv-~v~~~D~~~~~~~~---~----~~ 248 (496)
.|.+||=.| |+|+.+.+++..+... ..|++++.+...++.+.+.+ +. ++ .++..|..+..... . .+
T Consensus 10 ~~k~vlITG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (254)
T 2wsb_A 10 DGACAAVTG-AGSGIGLEICRAFAASGARLILIDREAAALDRAAQEL---GA-AVAARIVADVTDAEAMTAAAAEAEAVA 84 (254)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---GG-GEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---cc-cceeEEEEecCCHHHHHHHHHHHHhhC
Confidence 356777554 5688888888765433 48999999998887766554 32 34 67788887643211 0 14
Q ss_pred CcCEEEECCCCCC
Q 010971 249 TVDRVLLDAPCSG 261 (496)
Q Consensus 249 ~fD~VLlDaPCSg 261 (496)
.+|.|+..|-...
T Consensus 85 ~id~li~~Ag~~~ 97 (254)
T 2wsb_A 85 PVSILVNSAGIAR 97 (254)
T ss_dssp CCCEEEECCCCCC
T ss_pred CCcEEEECCccCC
Confidence 7899999775443
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.44 E-value=4.5 Score=38.77 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=54.7
Q ss_pred CCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~ 249 (496)
|.+||=.| |.||.+.+++..+. ....|+.++.+..+++.+...+...|. .+.++..|..+..... ..+.
T Consensus 4 ~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 81 (264)
T 3tfo_A 4 DKVILITG-ASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGG-TALAQVLDVTDRHSVAAFAQAAVDTWGR 81 (264)
T ss_dssp TCEEEESS-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 45666555 55778888877553 335899999999999999888887764 5667778887642211 1157
Q ss_pred cCEEEECCC
Q 010971 250 VDRVLLDAP 258 (496)
Q Consensus 250 fD~VLlDaP 258 (496)
.|.++..|-
T Consensus 82 iD~lVnnAG 90 (264)
T 3tfo_A 82 IDVLVNNAG 90 (264)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCC
Confidence 999998664
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.40 E-value=4.4 Score=38.80 Aligned_cols=127 Identities=15% Similarity=0.083 Sum_probs=74.1
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeC-------------CHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEM-------------KASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~-------------s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~ 243 (496)
.|.+||=.| |.||.+.+++..+-. ...|+++|. +..+++.+...+...|. ++.++..|..+...
T Consensus 14 ~gk~~lVTG-as~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~ 91 (280)
T 3pgx_A 14 QGRVAFITG-AARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGR-KALTRVLDVRDDAA 91 (280)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTC-CEEEEECCTTCHHH
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHH
Confidence 466777555 557778887775533 348999998 78888888888877764 46677788876422
Q ss_pred cc--------CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHH----HHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 244 VL--------GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC----SYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 244 ~~--------~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l----~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.. ..+..|.++..|--...+. ....+.++.... ..-...++..++..+... ..+|.||+.
T Consensus 92 v~~~~~~~~~~~g~id~lvnnAg~~~~~~-------~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~g~iv~i 163 (280)
T 3pgx_A 92 LRELVADGMEQFGRLDVVVANAGVLSWGR-------VWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEA-GNGGSIVVV 163 (280)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCCCCBC-------GGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-CSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCC-------cccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCCCEEEEE
Confidence 11 1147999998664332221 122344443322 122233455555543110 237888886
Q ss_pred eCC
Q 010971 312 TCS 314 (496)
Q Consensus 312 TCS 314 (496)
+..
T Consensus 164 sS~ 166 (280)
T 3pgx_A 164 SSS 166 (280)
T ss_dssp CCG
T ss_pred cch
Confidence 543
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=86.33 E-value=2.1 Score=39.97 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=54.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCC-HHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMK-ASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s-~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~ 247 (496)
.|.+||=.| |+|+.+.+++..+... ..|++++.+ +..+..+...+...+. ++.++..|..+.... + ..
T Consensus 6 ~~k~vlVTG-asggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (258)
T 3afn_B 6 KGKRVLITG-SSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGG-DAAFFAADLATSEACQQLVDEFVAKF 83 (258)
T ss_dssp TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 356777544 5688888888765433 489999988 7778777777766553 577788898764321 1 01
Q ss_pred CCcCEEEECCC
Q 010971 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~fD~VLlDaP 258 (496)
+.+|.|+..|-
T Consensus 84 g~id~vi~~Ag 94 (258)
T 3afn_B 84 GGIDVLINNAG 94 (258)
T ss_dssp SSCSEEEECCC
T ss_pred CCCCEEEECCC
Confidence 37999998664
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.27 E-value=6.6 Score=36.63 Aligned_cols=120 Identities=14% Similarity=0.036 Sum_probs=68.4
Q ss_pred CCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~ 249 (496)
+.+||=.| |+||.+.+++..+. ....|++++.+..+++.+...+. . ++.++..|..+..... ..+.
T Consensus 3 ~k~vlVTG-as~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~-~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 77 (235)
T 3l6e_A 3 LGHIIVTG-AGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG---N-AVIGIVADLAHHEDVDVAFAAAVEWGGL 77 (235)
T ss_dssp CCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG---G-GEEEEECCTTSHHHHHHHHHHHHHHHCS
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc---C-CceEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 34566444 56778888877553 33589999999999888777662 2 4778888987642211 1147
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHH----HHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC----SYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l----~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
.|.++..|-.+..+-+ ...+.++.... ..-...++..++..+ .+.+|.||+.+.
T Consensus 78 id~lvnnAg~~~~~~~-------~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~---~~~~~~iv~isS 135 (235)
T 3l6e_A 78 PELVLHCAGTGEFGPV-------GVYTAEQIRRVMESNLVSTILVAQQTVRLI---GERGGVLANVLS 135 (235)
T ss_dssp CSEEEEECCCC-------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHH---TTTCEEEEEECC
T ss_pred CcEEEECCCCCCCCCh-------HhCCHHHHHHHHHHHhHHHHHHHHHHHHHH---HHcCCEEEEEeC
Confidence 8999986643222211 12333433322 222334455555554 255677776543
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=86.24 E-value=5.5 Score=38.59 Aligned_cols=125 Identities=13% Similarity=0.079 Sum_probs=72.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCC--HHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------C
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMK--ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------G 246 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s--~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~ 246 (496)
.|.+||=.| |.||.+.+++..+-.. ..|+.++.+ ...++.+...+...|. ++.++..|..+..... .
T Consensus 48 ~~k~vlVTG-as~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~ 125 (294)
T 3r3s_A 48 KDRKALVTG-GDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGR-KAVLLPGDLSDESFARSLVHKAREA 125 (294)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTC-CEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHH
Confidence 356777555 5678888888765433 478888876 4567777777777764 5677788887642210 1
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~----~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.+.+|.++..|--.. ..+. ....+.++..... .-...++..++.. ++.+|.||+.+..
T Consensus 126 ~g~iD~lv~nAg~~~-----~~~~-~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~----~~~~g~Iv~isS~ 187 (294)
T 3r3s_A 126 LGGLDILALVAGKQT-----AIPE-IKDLTSEQFQQTFAVNVFALFWITQEAIPL----LPKGASIITTSSI 187 (294)
T ss_dssp HTCCCEEEECCCCCC-----CCSS-GGGCCHHHHHHHHHHHTHHHHHHHHHHGGG----CCTTCEEEEECCG
T ss_pred cCCCCEEEECCCCcC-----CCCC-cccCCHHHHHHHHHHHhHHHHHHHHHHHHH----hhcCCEEEEECCh
Confidence 157899998663221 1111 1123344333222 2223345555554 4778998886543
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=86.23 E-value=8.5 Score=36.56 Aligned_cols=79 Identities=15% Similarity=0.137 Sum_probs=55.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCC------------HHHHHHHHHHHHHcCCCeEEEEecCCCCCccc
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMK------------ASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s------------~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~ 244 (496)
.|.+||=.| |+||.+.+++..+- ....|+++|.+ ...+..+...+...|. ++.++..|..+....
T Consensus 12 ~gk~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v 89 (278)
T 3sx2_A 12 TGKVAFITG-AARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGS-RIVARQADVRDRESL 89 (278)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTC-CEEEEECCTTCHHHH
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHH
Confidence 466777555 56778888777654 33489999987 8888888888877764 577888898764321
Q ss_pred c--------CCCCcCEEEECCC
Q 010971 245 L--------GLNTVDRVLLDAP 258 (496)
Q Consensus 245 ~--------~~~~fD~VLlDaP 258 (496)
. ..+..|.++..|-
T Consensus 90 ~~~~~~~~~~~g~id~lv~nAg 111 (278)
T 3sx2_A 90 SAALQAGLDELGRLDIVVANAG 111 (278)
T ss_dssp HHHHHHHHHHHCCCCEEEECCC
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 1 1147999998663
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.22 E-value=4.5 Score=38.29 Aligned_cols=79 Identities=16% Similarity=0.136 Sum_probs=54.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=. -|+||.+.+++..+-. ...|+.++.+..++..+...+...|. ++.++..|..+..... ..+
T Consensus 6 ~~k~vlVT-Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 83 (262)
T 1zem_A 6 NGKVCLVT-GAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGV-EARSYVCDVTSEEAVIGTVDSVVRDFG 83 (262)
T ss_dssp TTCEEEEE-TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTS-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEe-CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 35667744 4567888888876543 34899999999998888877776654 4677788887642210 014
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
.+|.|+..|-
T Consensus 84 ~id~lv~nAg 93 (262)
T 1zem_A 84 KIDFLFNNAG 93 (262)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 7899998764
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=86.04 E-value=0.77 Score=45.36 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=58.2
Q ss_pred CCCCCC-eEeeccC--CCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEe-cCCCCCccccCCCCc
Q 010971 175 APQEKE-RVIDMAA--APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCN-YDGNELPKVLGLNTV 250 (496)
Q Consensus 175 ~~~~g~-~VLDmcA--gpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~-~D~~~~~~~~~~~~f 250 (496)
.+++|+ +||-.+| |-|..++++|..++ ..|++.+.++.+++.++ .+|.+.+.-.. .|...+.. .....|
T Consensus 146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~----~lGa~~v~~~~~~~~~~~~~-~~~~~~ 218 (330)
T 1tt7_A 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYLK----QLGASEVISREDVYDGTLKA-LSKQQW 218 (330)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHHH----HHTCSEEEEHHHHCSSCCCS-SCCCCE
T ss_pred CcCCCCceEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH----HcCCcEEEECCCchHHHHHH-hhcCCc
Confidence 577886 8998886 23444455666554 47999999988887664 47876542111 11111111 112469
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
|+|+- |+|. ..+..+++++ ++||++|..
T Consensus 219 d~vid---~~g~--------------------------~~~~~~~~~l----~~~G~iv~~ 246 (330)
T 1tt7_A 219 QGAVD---PVGG--------------------------KQLASLLSKI----QYGGSVAVS 246 (330)
T ss_dssp EEEEE---SCCT--------------------------HHHHHHHTTE----EEEEEEEEC
T ss_pred cEEEE---CCcH--------------------------HHHHHHHHhh----cCCCEEEEE
Confidence 98875 3331 1256677776 999998764
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=85.96 E-value=4.3 Score=37.48 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=48.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeE-EEEecCCC-CCccccCCCCcCEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNT-IVCNYDGN-ELPKVLGLNTVDRVL 254 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv-~v~~~D~~-~~~~~~~~~~fD~VL 254 (496)
.|.+||=. -|+|+.+.+++..+-.. ..|++++.++.++..+.. . ++ .++..|.. .+...+ ..+|.|+
T Consensus 20 ~~~~ilVt-GatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~----~---~~~~~~~~Dl~~~~~~~~--~~~D~vi 89 (236)
T 3e8x_A 20 QGMRVLVV-GANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE----R---GASDIVVANLEEDFSHAF--ASIDAVV 89 (236)
T ss_dssp -CCEEEEE-TTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----T---TCSEEEECCTTSCCGGGG--TTCSEEE
T ss_pred CCCeEEEE-CCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh----C---CCceEEEcccHHHHHHHH--cCCCEEE
Confidence 36778744 46788998888765433 489999999888765543 2 35 66777875 333334 5799999
Q ss_pred ECCC
Q 010971 255 LDAP 258 (496)
Q Consensus 255 lDaP 258 (496)
..+.
T Consensus 90 ~~ag 93 (236)
T 3e8x_A 90 FAAG 93 (236)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 8654
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=85.91 E-value=3 Score=40.96 Aligned_cols=94 Identities=21% Similarity=0.247 Sum_probs=57.4
Q ss_pred cCCCCCCeEeecc-CC-CchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCC-CccccCCCCc
Q 010971 174 LAPQEKERVIDMA-AA-PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE-LPKVLGLNTV 250 (496)
Q Consensus 174 L~~~~g~~VLDmc-Ag-pGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~-~~~~~~~~~f 250 (496)
..+++|++||=.+ +| -|..++++|..++ ..|++.+ +..+++ .++++|.+.+ ++.+... +.... ..|
T Consensus 148 ~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~G--a~vi~~~-~~~~~~----~~~~lGa~~~--i~~~~~~~~~~~~--~g~ 216 (321)
T 3tqh_A 148 AEVKQGDVVLIHAGAGGVGHLAIQLAKQKG--TTVITTA-SKRNHA----FLKALGAEQC--INYHEEDFLLAIS--TPV 216 (321)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEE-CHHHHH----HHHHHTCSEE--EETTTSCHHHHCC--SCE
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcC--CEEEEEe-ccchHH----HHHHcCCCEE--EeCCCcchhhhhc--cCC
Confidence 4688999999775 33 2445556666553 3788887 555544 4556888753 3333333 33333 579
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
|+||- |+|. ..+..+++++ ++||++|..
T Consensus 217 D~v~d---~~g~--------------------------~~~~~~~~~l----~~~G~iv~~ 244 (321)
T 3tqh_A 217 DAVID---LVGG--------------------------DVGIQSIDCL----KETGCIVSV 244 (321)
T ss_dssp EEEEE---SSCH--------------------------HHHHHHGGGE----EEEEEEEEC
T ss_pred CEEEE---CCCc--------------------------HHHHHHHHhc----cCCCEEEEe
Confidence 99875 4432 1135667776 999999853
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=85.91 E-value=16 Score=35.09 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=44.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEe-CCHHHHHHHHHHHH-HcCCCeEEEEecCCCCCc
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANE-MKASRLKSLTANLH-RMGVTNTIVCNYDGNELP 242 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D-~s~~rl~~l~~nl~-r~g~~nv~v~~~D~~~~~ 242 (496)
.|.+||=.| |.||.+.+++..+- ....|+.++ .+..++..+.+.+. ..| .++.++..|..+..
T Consensus 8 ~~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~ 73 (291)
T 1e7w_A 8 TVPVALVTG-AAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP-NSAITVQADLSNVA 73 (291)
T ss_dssp CCCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSSSC
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcC-CeeEEEEeecCCcc
Confidence 355677555 55778888887653 334899999 99999888887776 445 35777788887654
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=85.89 E-value=6.8 Score=37.66 Aligned_cols=125 Identities=14% Similarity=0.113 Sum_probs=73.3
Q ss_pred CCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeC-CHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~-s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
|.+||=.| |.||.+.+++..+-. ...|+.+|. +...++.+...+....-..+.++..|..+..... ..+
T Consensus 25 ~k~~lVTG-as~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 103 (281)
T 3v2h_A 25 TKTAVITG-STSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRFG 103 (281)
T ss_dssp TCEEEEET-CSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHHTS
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHHCC
Confidence 56677555 567788888776533 348999998 7888888888777664456788888987642211 125
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHH----HHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC----SYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l----~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
.+|.|+..|--+..+.+ ...+.++.... ..-...++..++..+.. +.+|.||+.+.
T Consensus 104 ~iD~lv~nAg~~~~~~~-------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~--~~~g~iv~isS 163 (281)
T 3v2h_A 104 GADILVNNAGVQFVEKI-------EDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKK--KGWGRIINIAS 163 (281)
T ss_dssp SCSEEEECCCCCCCCCG-------GGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH--HTCEEEEEECC
T ss_pred CCCEEEECCCCCCCCCc-------ccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH--cCCCEEEEECC
Confidence 79999987643333222 12233333221 12223345555544311 24578887543
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=85.75 E-value=7.6 Score=37.15 Aligned_cols=124 Identities=14% Similarity=0.167 Sum_probs=73.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEe-CCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANE-MKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D-~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~ 247 (496)
.|.+||=.|+ .||.+.+++..+-..| .|+.++ .+..+++.+...+...|. .+.++..|..+.... + ..
T Consensus 30 ~gk~~lVTGa-s~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~ 107 (271)
T 3v2g_A 30 AGKTAFVTGG-SRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGG-RAVAIRADNRDAEAIEQAIRETVEAL 107 (271)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4667776654 5778888777654333 677775 456788888888887765 466778888764321 1 11
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~----~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
+..|.++..|-....+.+ ...+.++..... .-...++..++..+ +.+|.||+.+.+
T Consensus 108 g~iD~lvnnAg~~~~~~~-------~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m----~~~g~iv~isS~ 167 (271)
T 3v2g_A 108 GGLDILVNSAGIWHSAPL-------EETTVADFDEVMAVNFRAPFVAIRSASRHL----GDGGRIITIGSN 167 (271)
T ss_dssp SCCCEEEECCCCCCCCCG-------GGCCHHHHHHHHHHHTHHHHHHHHHHHHHC----CTTCEEEEECCG
T ss_pred CCCcEEEECCCCCCCCCh-------hhCCHHHHHHHHHHHhHHHHHHHHHHHHHH----hcCCEEEEEeCh
Confidence 479999987643322211 223444433322 22233555555554 778998887654
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=85.67 E-value=4.4 Score=38.84 Aligned_cols=80 Identities=14% Similarity=0.157 Sum_probs=55.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.| |.||.+.+++..+- ....|++++.+...++.+...+...|.. +.++..|..+..... ..+
T Consensus 27 ~~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~Dv~d~~~v~~~~~~~~~~~g 104 (270)
T 3ftp_A 27 DKQVAIVTG-ASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLE-GRGAVLNVNDATAVDALVESTLKEFG 104 (270)
T ss_dssp TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCC-CEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc-EEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 466677555 66778888876553 3348999999999999999888887753 556667877642211 114
Q ss_pred CcCEEEECCCC
Q 010971 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~fD~VLlDaPC 259 (496)
..|.++..|--
T Consensus 105 ~iD~lvnnAg~ 115 (270)
T 3ftp_A 105 ALNVLVNNAGI 115 (270)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999987643
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=85.64 E-value=1.2 Score=45.97 Aligned_cols=52 Identities=13% Similarity=0.076 Sum_probs=35.3
Q ss_pred cCCCCCCeEeeccC-C-CchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeE
Q 010971 174 LAPQEKERVIDMAA-A-PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231 (496)
Q Consensus 174 L~~~~g~~VLDmcA-g-pGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv 231 (496)
..+++|++||=.+| | -|..+++++..++ ..|++++.++.+++.+ +.+|...+
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~G--a~vi~~~~~~~~~~~~----~~lGa~~~ 269 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGG--GIPVAVVSSAQKEAAV----RALGCDLV 269 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHH----HHTTCCCE
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHH----HhcCCCEE
Confidence 45789999998776 2 2333444454442 4788999999998876 45787654
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=85.63 E-value=6.1 Score=37.16 Aligned_cols=80 Identities=11% Similarity=0.051 Sum_probs=54.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCC--CCCccc---c-----C
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG--NELPKV---L-----G 246 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~--~~~~~~---~-----~ 246 (496)
.|.+||=.| |.||.+.+++..+- ....|+.+|.+..++..+...+...+...+.++..|. .+.... . .
T Consensus 11 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 89 (252)
T 3f1l_A 11 NDRIILVTG-ASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVN 89 (252)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHh
Confidence 356677555 55778887777553 3358999999999999988888776655666777787 443111 0 1
Q ss_pred CCCcCEEEECCC
Q 010971 247 LNTVDRVLLDAP 258 (496)
Q Consensus 247 ~~~fD~VLlDaP 258 (496)
.+..|.++..|-
T Consensus 90 ~g~id~lv~nAg 101 (252)
T 3f1l_A 90 YPRLDGVLHNAG 101 (252)
T ss_dssp CSCCSEEEECCC
T ss_pred CCCCCEEEECCc
Confidence 257999998764
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=85.51 E-value=6.3 Score=36.43 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=51.6
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC-cEEEEE-eCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYAN-EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~-D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
|.+||=.| |+|+.+.+++..+... ..|+++ +.++..+..+...+...+. ++.++..|..+.... + ..+
T Consensus 5 ~~~vlItG-asggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (247)
T 2hq1_A 5 GKTAIVTG-SSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGI-NVVVAKGDVKNPEDVENMVKTAMDAFG 82 (247)
T ss_dssp TCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTC-CEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred CcEEEEEC-CCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 56677554 5688888888765433 478888 6677777777777766654 577788888764321 1 013
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
.+|.|+..|-
T Consensus 83 ~~d~vi~~Ag 92 (247)
T 2hq1_A 83 RIDILVNNAG 92 (247)
T ss_dssp CCCEEEECC-
T ss_pred CCCEEEECCC
Confidence 7899998664
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=85.45 E-value=5.4 Score=37.62 Aligned_cols=78 Identities=12% Similarity=0.092 Sum_probs=50.7
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.+.+||=.| |+||.+.+++..+- ....|++++.+......+...+... .++.++..|..+.... + ..+
T Consensus 15 ~~k~vlITG-asggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 91 (278)
T 2bgk_A 15 QDKVAIITG-GAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP--DVISFVHCDVTKDEDVRNLVDTTIAKHG 91 (278)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred cCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 466777555 57888888887553 3348999999988776655444211 2577888898764321 1 014
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
.+|.|+..|-
T Consensus 92 ~id~li~~Ag 101 (278)
T 2bgk_A 92 KLDIMFGNVG 101 (278)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCc
Confidence 7899998653
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=85.28 E-value=2.7 Score=39.71 Aligned_cols=80 Identities=21% Similarity=0.130 Sum_probs=55.5
Q ss_pred CCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHc--CCCeEEEEecCCCCCcccc--------CC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRM--GVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~--g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
|.+||=.| |+||.+.+++..+-. ...|+.++.+..+++.+.+.+... +..++.++..|..+..... ..
T Consensus 7 ~k~~lVTG-as~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 85 (250)
T 3nyw_A 7 KGLAIITG-ASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKY 85 (250)
T ss_dssp CCEEEEES-TTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHhc
Confidence 55666555 557778777765532 348999999999999998888776 3356778888987743211 11
Q ss_pred CCcCEEEECCCC
Q 010971 248 NTVDRVLLDAPC 259 (496)
Q Consensus 248 ~~fD~VLlDaPC 259 (496)
+..|.++..|--
T Consensus 86 g~iD~lvnnAg~ 97 (250)
T 3nyw_A 86 GAVDILVNAAAM 97 (250)
T ss_dssp CCEEEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 578999987643
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=85.18 E-value=4.5 Score=38.82 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=56.7
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.| |.||.+.+++..+- ....|+.+|.+..++..+.+.+...|. ++.++..|..+..... ..+
T Consensus 25 ~gk~~lVTG-as~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 102 (271)
T 4ibo_A 25 GGRTALVTG-SSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGH-DAEAVAFDVTSESEIIEAFARLDEQGI 102 (271)
T ss_dssp TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence 466777555 56778888877653 334899999999999999888887764 4677788887643211 124
Q ss_pred CcCEEEECCCC
Q 010971 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~fD~VLlDaPC 259 (496)
..|.|+..|-.
T Consensus 103 ~iD~lv~nAg~ 113 (271)
T 4ibo_A 103 DVDILVNNAGI 113 (271)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999987643
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.13 E-value=0.56 Score=46.94 Aligned_cols=96 Identities=17% Similarity=0.204 Sum_probs=52.9
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCC--CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---cCCC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKN--TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LGLN 248 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~--~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~~~~ 248 (496)
..+++|++||=.+|+ |+.++.+.++... ...|++.+ +..+.+.+ . +|...+. +.+ ..+... ....
T Consensus 138 ~~~~~g~~VlV~Ga~-G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~----~-~ga~~~~--~~~-~~~~~~~~~~~~~ 207 (349)
T 4a27_A 138 ANLREGMSVLVHSAG-GGVGQAVAQLCSTVPNVTVFGTA-STFKHEAI----K-DSVTHLF--DRN-ADYVQEVKRISAE 207 (349)
T ss_dssp SCCCTTCEEEESSTT-SHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHH----G-GGSSEEE--ETT-SCHHHHHHHHCTT
T ss_pred cCCCCCCEEEEEcCC-cHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHH----H-cCCcEEE--cCC-ccHHHHHHHhcCC
Confidence 357899999988773 4445444444332 34788888 55555443 2 6776543 222 222111 1235
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
.||+||- |+|.. .+..+++++ ++||++|...
T Consensus 208 g~Dvv~d---~~g~~--------------------------~~~~~~~~l----~~~G~~v~~G 238 (349)
T 4a27_A 208 GVDIVLD---CLCGD--------------------------NTGKGLSLL----KPLGTYILYG 238 (349)
T ss_dssp CEEEEEE---ECC---------------------------------CTTE----EEEEEEEEEC
T ss_pred CceEEEE---CCCch--------------------------hHHHHHHHh----hcCCEEEEEC
Confidence 7998875 44431 134566666 9999998653
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=85.02 E-value=6.8 Score=37.55 Aligned_cols=82 Identities=12% Similarity=0.118 Sum_probs=55.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.| |.||.+.+++..+- ....|++++.+..++..+.+.+...|. ++.++..|..+..... ..+
T Consensus 23 ~~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (279)
T 3sju_A 23 RPQTAFVTG-VSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGH-DVDGSSCDVTSTDEVHAAVAAAVERFG 100 (279)
T ss_dssp --CEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 356677555 55778887776553 335899999999999998888877664 4777788887643211 114
Q ss_pred CcCEEEECCCCCC
Q 010971 249 TVDRVLLDAPCSG 261 (496)
Q Consensus 249 ~fD~VLlDaPCSg 261 (496)
..|.|+..|-...
T Consensus 101 ~id~lv~nAg~~~ 113 (279)
T 3sju_A 101 PIGILVNSAGRNG 113 (279)
T ss_dssp SCCEEEECCCCCC
T ss_pred CCcEEEECCCCCC
Confidence 7899998775433
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=84.91 E-value=8.4 Score=35.45 Aligned_cols=79 Identities=15% Similarity=0.141 Sum_probs=52.6
Q ss_pred eEeeccCCCchHHHHHHHHcCCCc-EEEEE-eCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCCc
Q 010971 181 RVIDMAAAPGGKTTYIAALMKNTG-LIYAN-EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTV 250 (496)
Q Consensus 181 ~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~-D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~f 250 (496)
+||= .-|+|+.+.+++..+...| .|+++ +.+...+..+...+...|.....++..|..+..... ..+.+
T Consensus 3 ~vlI-TGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 81 (245)
T 2ph3_A 3 KALI-TGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGGL 81 (245)
T ss_dssp EEEE-TTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHTCC
T ss_pred EEEE-eCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcCCC
Confidence 4554 4467889998887665444 78887 889998888877777766543333778887643211 01478
Q ss_pred CEEEECCCCC
Q 010971 251 DRVLLDAPCS 260 (496)
Q Consensus 251 D~VLlDaPCS 260 (496)
|.|+..|-..
T Consensus 82 d~li~~Ag~~ 91 (245)
T 2ph3_A 82 DTLVNNAGIT 91 (245)
T ss_dssp CEEEECCCCC
T ss_pred CEEEECCCCC
Confidence 9999876433
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=84.89 E-value=6.8 Score=37.82 Aligned_cols=126 Identities=17% Similarity=0.126 Sum_probs=75.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.++|=-|+ .+|.+..+|..+- ....|+.+|.+.++++.+.+.+...|. ++..+..|..+..... ..+
T Consensus 8 ~gKvalVTGa-s~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~G 85 (255)
T 4g81_D 8 TGKTALVTGS-ARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGY-DAHGVAFDVTDELAIEAAFSKLDAEGI 85 (255)
T ss_dssp TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 4666775554 4667777776554 345899999999999999999988875 4667778887642211 236
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHH----HHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYL----QKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~l----Q~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
+.|.++.+|- +....| ....+.++....... -..+.+.++..+... ..||.||..+.
T Consensus 86 ~iDiLVNNAG-----~~~~~~--~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~~~G~IVnisS 146 (255)
T 4g81_D 86 HVDILINNAG-----IQYRKP--MVELELENWQKVIDTNLTSAFLVSRSAAKRMIAR-NSGGKIINIGS 146 (255)
T ss_dssp CCCEEEECCC-----CCCCCC--GGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECC
T ss_pred CCcEEEECCC-----CCCCCC--hhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-cCCCEEEEEee
Confidence 8999988763 322222 223444444433221 122334444433100 35688887543
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=84.81 E-value=6.1 Score=37.29 Aligned_cols=79 Identities=10% Similarity=0.151 Sum_probs=54.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.| |.||.+.+++..+-. ...|+.+|.+...+..+...+...+. ++.++..|..+..... ..+
T Consensus 5 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g 82 (257)
T 3imf_A 5 KEKVVIITG-GSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPG-QILTVQMDVRNTDDIQKMIEQIDEKFG 82 (257)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTT-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356677555 567788888776533 34899999999999888887766553 5777888987642211 114
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
..|.++..|-
T Consensus 83 ~id~lv~nAg 92 (257)
T 3imf_A 83 RIDILINNAA 92 (257)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 7899998664
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=84.79 E-value=7 Score=36.87 Aligned_cols=78 Identities=12% Similarity=0.149 Sum_probs=52.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.|.+||=.| |.||.+.+++..+-. ...|+.+|.+..++..+...+ + .++.++..|..+.... + ..+
T Consensus 7 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g 81 (259)
T 4e6p_A 7 EGKSALITG-SARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI---G-PAAYAVQMDVTRQDSIDAAIAATVEHAG 81 (259)
T ss_dssp TTCEEEEET-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C-TTEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-CCceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 466777555 668888888876533 348999999998887766554 3 2467778888764321 1 124
Q ss_pred CcCEEEECCCCC
Q 010971 249 TVDRVLLDAPCS 260 (496)
Q Consensus 249 ~fD~VLlDaPCS 260 (496)
.+|.|+..|-.+
T Consensus 82 ~id~lv~~Ag~~ 93 (259)
T 4e6p_A 82 GLDILVNNAALF 93 (259)
T ss_dssp SCCEEEECCCCC
T ss_pred CCCEEEECCCcC
Confidence 799999976543
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.79 E-value=15 Score=36.23 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=45.1
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEe-CCHHHHHHHHHHHH-HcCCCeEEEEecCCCCCc
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANE-MKASRLKSLTANLH-RMGVTNTIVCNYDGNELP 242 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D-~s~~rl~~l~~nl~-r~g~~nv~v~~~D~~~~~ 242 (496)
.|.+||=. -|.||.+.+++..+- ....|+.++ .+..++..+...+. ..| .++.++..|..+..
T Consensus 45 ~~k~~lVT-Gas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~d~~ 110 (328)
T 2qhx_A 45 TVPVALVT-GAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP-NSAITVQADLSNVA 110 (328)
T ss_dssp CCCEEEET-TCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSSSC
T ss_pred CCCEEEEE-CCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcC-CeEEEEEeeCCCch
Confidence 35667644 456888888887653 335899999 99999988887776 445 35777788887654
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=84.78 E-value=5.7 Score=37.57 Aligned_cols=121 Identities=12% Similarity=0.150 Sum_probs=72.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.| |.||.+.+++..+- ....|+.+|.+..+++.+.+.+ + .++.++..|..+..... ..+
T Consensus 7 ~gk~~lVTG-as~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (255)
T 4eso_A 7 QGKKAIVIG-GTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G-PRVHALRSDIADLNEIAVLGAAAGQTLG 81 (255)
T ss_dssp TTCEEEEET-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G-GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-CcceEEEccCCCHHHHHHHHHHHHHHhC
Confidence 466777555 55778888777653 3348999999999888776655 3 25777888987653211 114
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHH----HHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY----LQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~----lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.+|.++..|-.+..+.+ ...+.++...... -...++..++..+ +.+|.||+.+..
T Consensus 82 ~id~lv~nAg~~~~~~~-------~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~----~~~g~iv~isS~ 140 (255)
T 4eso_A 82 AIDLLHINAGVSELEPF-------DQVSEASYDRQFAVNTKGAFFTVQRLTPLI----REGGSIVFTSSV 140 (255)
T ss_dssp SEEEEEECCCCCCCBCG-------GGCCHHHHHHHHHHHTHHHHHHHHHHGGGE----EEEEEEEEECCG
T ss_pred CCCEEEECCCCCCCCCh-------hhCCHHHHHHHHHHhhHHHHHHHHHHHHHH----hcCCEEEEECCh
Confidence 78999887644332221 2234444333222 2233444444443 678998886543
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=84.67 E-value=7.2 Score=36.83 Aligned_cols=66 Identities=14% Similarity=0.287 Sum_probs=49.6
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCC
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaP 258 (496)
.+||=.| | |..+.+++..+...| .|++++.++.....+.. .++.++..|..++. + ..+|.|+.-+.
T Consensus 6 ~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-------~~~~~~~~D~~d~~--~--~~~d~vi~~a~ 72 (286)
T 3ius_A 6 GTLLSFG-H-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA-------SGAEPLLWPGEEPS--L--DGVTHLLISTA 72 (286)
T ss_dssp CEEEEET-C-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH-------TTEEEEESSSSCCC--C--TTCCEEEECCC
T ss_pred CcEEEEC-C-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh-------CCCeEEEecccccc--c--CCCCEEEECCC
Confidence 5788888 5 999999988764434 89999999877655432 34778888988765 3 68999998554
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=84.62 E-value=11 Score=36.06 Aligned_cols=78 Identities=14% Similarity=0.153 Sum_probs=52.0
Q ss_pred CCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCH-HHHHHHHHHHH-HcCCCeEEEEecCCCC----Cccc---c---
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKA-SRLKSLTANLH-RMGVTNTIVCNYDGNE----LPKV---L--- 245 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~-~rl~~l~~nl~-r~g~~nv~v~~~D~~~----~~~~---~--- 245 (496)
|.+||=.| |.||.+.+++..+-. ...|++++.+. .++..+...+. ..| .++.++..|..+ .... +
T Consensus 23 ~k~~lVTG-as~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~~~~~~~~~v~~~~~~~ 100 (288)
T 2x9g_A 23 APAAVVTG-AAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERS-NTAVVCQADLTNSNVLPASCEEIINSC 100 (288)
T ss_dssp CCEEEETT-CSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSCSTTHHHHHHHHHHHH
T ss_pred CCEEEEeC-CCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcC-CceEEEEeecCCccCCHHHHHHHHHHH
Confidence 56676555 557788887765532 34899999987 88877777765 444 357778889887 3211 0
Q ss_pred --CCCCcCEEEECCC
Q 010971 246 --GLNTVDRVLLDAP 258 (496)
Q Consensus 246 --~~~~fD~VLlDaP 258 (496)
..+.+|.|+..|-
T Consensus 101 ~~~~g~iD~lvnnAG 115 (288)
T 2x9g_A 101 FRAFGRCDVLVNNAS 115 (288)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHhcCCCCEEEECCC
Confidence 0147899998764
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=84.54 E-value=11 Score=35.56 Aligned_cols=78 Identities=15% Similarity=0.130 Sum_probs=55.7
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.| |.||.+.+++..+-. ...|+.+|.+..+++.+...+...|. ++.++..|..+..... ..+
T Consensus 10 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g 87 (264)
T 3ucx_A 10 TDKVVVISG-VGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGR-RALSVGTDITDDAQVAHLVDETMKAYG 87 (264)
T ss_dssp TTCEEEEES-CCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred CCcEEEEEC-CCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 466777555 456777777765533 34899999999999999988887764 5677788887643211 125
Q ss_pred CcCEEEECC
Q 010971 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~fD~VLlDa 257 (496)
..|.++..|
T Consensus 88 ~id~lv~nA 96 (264)
T 3ucx_A 88 RVDVVINNA 96 (264)
T ss_dssp CCSEEEECC
T ss_pred CCcEEEECC
Confidence 799999876
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.31 E-value=5.1 Score=38.47 Aligned_cols=78 Identities=12% Similarity=0.038 Sum_probs=53.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.|.+||=.| |+||.+.+++..+.. ...|+++|.+..++..+.+.+...| ++.++..|..+.... + ..+
T Consensus 28 ~~k~vlVTG-as~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g 104 (276)
T 2b4q_A 28 AGRIALVTG-GSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYG--DCQAIPADLSSEAGARRLAQALGELSA 104 (276)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSS--CEEECCCCTTSHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 356777555 567888888776533 3489999999988887777765544 577777888764211 1 125
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
.+|.|+..|-
T Consensus 105 ~iD~lvnnAg 114 (276)
T 2b4q_A 105 RLDILVNNAG 114 (276)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999998764
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=84.29 E-value=9.1 Score=36.55 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=54.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.|.+||=.| |+||.+.+++..+... ..|++++.++.+++.+.+.+...|. ++.++..|..+.... + ..+
T Consensus 21 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g 98 (277)
T 2rhc_B 21 DSEVALVTG-ATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSVPEIEALVAAVVERYG 98 (277)
T ss_dssp TSCEEEEET-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 356677555 5678888887765433 4899999999998888877776664 466778888764221 1 124
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
.+|.|+..|-
T Consensus 99 ~iD~lv~~Ag 108 (277)
T 2rhc_B 99 PVDVLVNNAG 108 (277)
T ss_dssp SCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999998764
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=84.25 E-value=7.5 Score=35.80 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=64.8
Q ss_pred ccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c--CCCCcCEEEECCC
Q 010971 185 MAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L--GLNTVDRVLLDAP 258 (496)
Q Consensus 185 mcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~--~~~~fD~VLlDaP 258 (496)
+.-|+||.+.+++..+.. ...|+.++.+..+++.+...+ + .++.++..|..+.... + -...+|.|+..|-
T Consensus 6 VTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~Ag 81 (230)
T 3guy_A 6 ITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL---S-NNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSAG 81 (230)
T ss_dssp EESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC---S-SCCCEEECCTTCHHHHHHHHHSCSSCCSEEEECCC
T ss_pred EecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---h-hccCeEeecCCCHHHHHHHHHHHhhcCCEEEEeCC
Confidence 344567888888776533 347999999998887665544 2 3466677787764211 1 1134699988664
Q ss_pred CCCCCcccCCchhhccCCHHHHHH----HHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 259 CSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 259 CSg~G~i~r~p~~k~~~s~~~i~~----l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
-...+.+ ...+.++... ...-...++..++..+ .+.+|.||+.+.+
T Consensus 82 ~~~~~~~-------~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~---~~~~~~iv~isS~ 131 (230)
T 3guy_A 82 SGYFGLL-------QEQDPEQIQTLIENNLSSAINVLRELVKRY---KDQPVNVVMIMST 131 (230)
T ss_dssp CCCCSCG-------GGSCHHHHHHHHHHHHHHHHHHHHHHHHHH---TTSCCEEEEECCG
T ss_pred cCCCCcc-------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCeEEEEeec
Confidence 3222211 2233343332 2223344566666655 2446677765443
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=84.22 E-value=11 Score=36.17 Aligned_cols=125 Identities=14% Similarity=0.120 Sum_probs=69.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.+.+||=. -|+||.+.+++..+- ....|+.+|.+..+++.+...+ + .++.++..|..+..... ..+
T Consensus 27 ~~k~~lVT-Gas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 101 (272)
T 4dyv_A 27 GKKIAIVT-GAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI---G-DDALCVPTDVTDPDSVRALFTATVEKFG 101 (272)
T ss_dssp -CCEEEET-TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---T-SCCEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEe-CCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C-CCeEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 35566644 456778888777653 3348999999998887776655 3 45677888887642211 114
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~----~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
.+|.++..|--+..+ .| ....+.++..... .-...++..++..+...-.++|.||+.+.
T Consensus 102 ~iD~lVnnAg~~~~~----~~--~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS 164 (272)
T 4dyv_A 102 RVDVLFNNAGTGAPA----IP--MEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGS 164 (272)
T ss_dssp CCCEEEECCCCCCCS----SC--GGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECC
T ss_pred CCCEEEECCCCCCCC----CC--hhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECc
Confidence 799999866432210 01 1123333333221 22233455555554211112688888644
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=84.16 E-value=5.9 Score=36.46 Aligned_cols=74 Identities=19% Similarity=0.173 Sum_probs=48.3
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~ 249 (496)
+.+|| +.-|+|+.+.+++..+-.. ..|++++.+..++..+...+ + ++.++..|..+.... + ..+.
T Consensus 5 ~k~vl-VtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (234)
T 2ehd_A 5 KGAVL-ITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL---E--GALPLPGDVREEGDWARAVAAMEEAFGE 78 (234)
T ss_dssp CCEEE-ESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---T--TCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEE-EECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---h--hceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 44566 4456788888888765433 48999999988877665443 2 566777888764221 1 0147
Q ss_pred cCEEEECCC
Q 010971 250 VDRVLLDAP 258 (496)
Q Consensus 250 fD~VLlDaP 258 (496)
+|.|+..|-
T Consensus 79 id~li~~Ag 87 (234)
T 2ehd_A 79 LSALVNNAG 87 (234)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCC
Confidence 899998654
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=84.14 E-value=4.8 Score=38.54 Aligned_cols=80 Identities=13% Similarity=0.084 Sum_probs=54.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.| |.||.+.+++..+-.. ..|+.++.+..++..+...+....-.++.++..|..+..... ..+
T Consensus 26 ~~k~~lVTG-as~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 104 (277)
T 4fc7_A 26 RDKVAFITG-GGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEFG 104 (277)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 466777555 5678888888765443 489999999998888777765432235778888987642211 114
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
..|.++..|-
T Consensus 105 ~id~lv~nAg 114 (277)
T 4fc7_A 105 RIDILINCAA 114 (277)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCc
Confidence 7999998663
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=84.11 E-value=7.7 Score=36.71 Aligned_cols=79 Identities=14% Similarity=0.200 Sum_probs=54.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEEE-eCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYAN-EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~-D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|.+||=.| |.||.+.+++..+-..| .|+.+ +.+..++..+...+...|. ++.++..|..+..... ..
T Consensus 3 ~~k~vlVTG-as~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (258)
T 3oid_A 3 QNKCALVTG-SSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGV-KVLVVKANVGQPAKIKEMFQQIDETF 80 (258)
T ss_dssp CCCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEec-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 355666554 56788888887654334 66665 8999999888888877764 5777788987643211 11
Q ss_pred CCcCEEEECCC
Q 010971 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~fD~VLlDaP 258 (496)
+..|.++..|-
T Consensus 81 g~id~lv~nAg 91 (258)
T 3oid_A 81 GRLDVFVNNAA 91 (258)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 47899998664
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.06 E-value=6.9 Score=37.27 Aligned_cols=79 Identities=10% Similarity=0.029 Sum_probs=54.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC-
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL- 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~- 247 (496)
.|.+||=.| |+||.+.+++..+.. ...|++++.+..+++.+.+.+...|. ++.++..|..+..... ..
T Consensus 20 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 97 (273)
T 1ae1_A 20 KGTTALVTG-GSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSRTERDKLMQTVAHVFD 97 (273)
T ss_dssp TTCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 356677555 567888888776543 34899999999998888777776654 4677788887643211 11
Q ss_pred CCcCEEEECCC
Q 010971 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~fD~VLlDaP 258 (496)
+.+|.++..|-
T Consensus 98 g~id~lv~nAg 108 (273)
T 1ae1_A 98 GKLNILVNNAG 108 (273)
T ss_dssp SCCCEEEECCC
T ss_pred CCCcEEEECCC
Confidence 57899998764
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=83.93 E-value=8.5 Score=37.71 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=55.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCC------------HHHHHHHHHHHHHcCCCeEEEEecCCCCCccc
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMK------------ASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s------------~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~ 244 (496)
.|.+||=.| |.||.+.+++..+- ....|+++|.+ ..++..+...+...|. .+.++..|..+....
T Consensus 45 ~gk~~lVTG-as~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v 122 (317)
T 3oec_A 45 QGKVAFITG-AARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGR-RIIARQADVRDLASL 122 (317)
T ss_dssp TTCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHH
Confidence 466677555 55778888777553 33489999886 7888888777777764 477778888764321
Q ss_pred c--------CCCCcCEEEECCCCCC
Q 010971 245 L--------GLNTVDRVLLDAPCSG 261 (496)
Q Consensus 245 ~--------~~~~fD~VLlDaPCSg 261 (496)
. ..+.+|.++..|-.+.
T Consensus 123 ~~~~~~~~~~~g~iD~lVnnAg~~~ 147 (317)
T 3oec_A 123 QAVVDEALAEFGHIDILVSNVGISN 147 (317)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCC
Confidence 1 1147999998765443
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=83.89 E-value=1.4 Score=43.89 Aligned_cols=96 Identities=16% Similarity=0.107 Sum_probs=55.8
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc----CCCCcC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL----GLNTVD 251 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~----~~~~fD 251 (496)
++|+.++=+.+|.|+.++.++++... ...|+++|.++.+++.++ .+|...+ ++.+...+.... ....||
T Consensus 162 ~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~----~~Ga~~~--~~~~~~~~~~~v~~~~~~~g~D 235 (349)
T 3pi7_A 162 QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLK----DIGAAHV--LNEKAPDFEATLREVMKAEQPR 235 (349)
T ss_dssp HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHH----HHTCSEE--EETTSTTHHHHHHHHHHHHCCC
T ss_pred hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----HcCCCEE--EECCcHHHHHHHHHHhcCCCCc
Confidence 56643333655666666554444321 148999999999987764 5787543 333333332111 113699
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
+||- |+|.. .+..+++++ ++||++|..
T Consensus 236 ~vid---~~g~~--------------------------~~~~~~~~l----~~~G~iv~~ 262 (349)
T 3pi7_A 236 IFLD---AVTGP--------------------------LASAIFNAM----PKRARWIIY 262 (349)
T ss_dssp EEEE---SSCHH--------------------------HHHHHHHHS----CTTCEEEEC
T ss_pred EEEE---CCCCh--------------------------hHHHHHhhh----cCCCEEEEE
Confidence 9875 44321 134566766 999998864
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=83.84 E-value=8.7 Score=35.83 Aligned_cols=78 Identities=15% Similarity=0.196 Sum_probs=53.6
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeC-CHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~-s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
|.+||=. -|+||.+.+++..+-.. ..|++++. +..+++.+.+.+...|. ++.++..|..+.... + ..+
T Consensus 4 ~k~vlVT-Gas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (246)
T 2uvd_A 4 GKVALVT-GASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGS-DAIAVRADVANAEDVTNMVKQTVDVFG 81 (246)
T ss_dssp TCEEEET-TCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEE-CCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5566644 46688888888765433 48889998 88888888877776654 466777888764321 1 014
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
.+|.|+..|-
T Consensus 82 ~id~lv~nAg 91 (246)
T 2uvd_A 82 QVDILVNNAG 91 (246)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999998664
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=83.82 E-value=11 Score=35.09 Aligned_cols=81 Identities=12% Similarity=0.162 Sum_probs=53.8
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeC-CHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~-s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
+.+||= .-|.||.+.+++..+-.. ..|+.++. +..+++.+.+.+...|. ++.++..|..+..... ..+
T Consensus 4 ~k~~lV-TGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 81 (246)
T 3osu_A 4 TKSALV-TGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGV-DSFAIQANVADADEVKAMIKEVVSQFG 81 (246)
T ss_dssp SCEEEE-TTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTS-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEE-ECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 445664 445678888888765433 47777776 67888888888887765 4667788887643211 114
Q ss_pred CcCEEEECCCCCC
Q 010971 249 TVDRVLLDAPCSG 261 (496)
Q Consensus 249 ~fD~VLlDaPCSg 261 (496)
.+|.++..|-.+.
T Consensus 82 ~id~lv~nAg~~~ 94 (246)
T 3osu_A 82 SLDVLVNNAGITR 94 (246)
T ss_dssp CCCEEEECCCCCC
T ss_pred CCCEEEECCCCCC
Confidence 7899998775433
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.76 E-value=6.4 Score=37.83 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=54.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeC-CHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~-s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|.+||=.| |.||.+.+++..+-. ...|+.+|. +...++.+...+...|. ++.++..|..+..... ..
T Consensus 28 ~~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~ 105 (280)
T 4da9_A 28 ARPVAIVTG-GRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGA-RVIFLRADLADLSSHQATVDAVVAEF 105 (280)
T ss_dssp CCCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTC-CEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred CCCEEEEec-CCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 466677555 557778877775533 348888885 88888888888887764 5777888987753221 11
Q ss_pred CCcCEEEECCC
Q 010971 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~fD~VLlDaP 258 (496)
+..|.++..|-
T Consensus 106 g~iD~lvnnAg 116 (280)
T 4da9_A 106 GRIDCLVNNAG 116 (280)
T ss_dssp SCCCEEEEECC
T ss_pred CCCCEEEECCC
Confidence 47899998763
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=83.57 E-value=4.3 Score=40.28 Aligned_cols=75 Identities=12% Similarity=0.140 Sum_probs=53.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-c--EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc---cccCCCCcC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-G--LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP---KVLGLNTVD 251 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g--~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~---~~~~~~~fD 251 (496)
.|.+|| +.-|+|+.+.+++..+-.. | .|++++.++.....+...+. -.++.++.+|.++.. ..+ ..+|
T Consensus 20 ~~k~vl-VTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~l~~~~--~~~D 93 (344)
T 2gn4_A 20 DNQTIL-ITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN---DPRMRFFIGDVRDLERLNYAL--EGVD 93 (344)
T ss_dssp TTCEEE-EETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC---CTTEEEEECCTTCHHHHHHHT--TTCS
T ss_pred CCCEEE-EECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc---CCCEEEEECCCCCHHHHHHHH--hcCC
Confidence 466777 4556799999988765433 3 89999999988776665442 246788889987753 223 4799
Q ss_pred EEEECCC
Q 010971 252 RVLLDAP 258 (496)
Q Consensus 252 ~VLlDaP 258 (496)
.|+.-|.
T Consensus 94 ~Vih~Aa 100 (344)
T 2gn4_A 94 ICIHAAA 100 (344)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9998654
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=83.50 E-value=7.9 Score=36.71 Aligned_cols=124 Identities=12% Similarity=0.068 Sum_probs=72.7
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeC---CHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEM---KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------- 245 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~---s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~-------- 245 (496)
.|.+||=.| |.||.+.+++..+-..| .|+.++. +..+++.+...+...|. ++.++..|..+.....
T Consensus 10 ~~k~vlVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~ 87 (262)
T 3ksu_A 10 KNKVIVIAG-GIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGA-KVALYQSDLSNEEEVAKLFDFAEK 87 (262)
T ss_dssp TTCEEEEET-CSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTC-EEEEEECCCCSHHHHHHHHHHHHH
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHH
Confidence 466777555 55778888887765444 7777754 45677777777766654 5777888987643211
Q ss_pred CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 246 ~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~----~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
..+..|.++..|-....+.+ ...+.++..... .-...++..++..+ +++|.||+.+.+
T Consensus 88 ~~g~iD~lvnnAg~~~~~~~-------~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m----~~~g~iv~isS~ 149 (262)
T 3ksu_A 88 EFGKVDIAINTVGKVLKKPI-------VETSEAEFDAMDTINNKVAYFFIKQAAKHM----NPNGHIITIATS 149 (262)
T ss_dssp HHCSEEEEEECCCCCCSSCG-------GGCCHHHHHHHHHHHHHHHHHHHHHHHTTE----EEEEEEEEECCC
T ss_pred HcCCCCEEEECCCCCCCCCc-------ccCCHHHHHHHHHHHhHHHHHHHHHHHHhh----cCCCEEEEEech
Confidence 11478999886643222211 223444443322 22233455555544 678999886543
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.43 E-value=8.1 Score=36.81 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=54.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeC-------------CHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEM-------------KASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~-------------s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~ 243 (496)
.|.+||=.| |.||.+.+++..+- ....|+++|. +...+..+...+...+. .+.++..|..+...
T Consensus 10 ~~k~~lVTG-as~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~ 87 (277)
T 3tsc_A 10 EGRVAFITG-AARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANR-RIVAAVVDTRDFDR 87 (277)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHH
T ss_pred CCCEEEEEC-CccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHH
Confidence 466677555 55777777776553 3348999998 78888888877777664 46777888876432
Q ss_pred cc--------CCCCcCEEEECCCC
Q 010971 244 VL--------GLNTVDRVLLDAPC 259 (496)
Q Consensus 244 ~~--------~~~~fD~VLlDaPC 259 (496)
.. ..+..|.++..|-.
T Consensus 88 v~~~~~~~~~~~g~id~lvnnAg~ 111 (277)
T 3tsc_A 88 LRKVVDDGVAALGRLDIIVANAGV 111 (277)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 11 11579999987643
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.28 E-value=5.1 Score=38.32 Aligned_cols=124 Identities=17% Similarity=0.134 Sum_probs=72.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEE-eCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYAN-EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~-D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|.+||=.| |.||.+.+++..+-.. ..|+.+ ..+...++.+...+...|. .+.++..|..+..... ..
T Consensus 26 ~~k~~lVTG-as~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~ 103 (267)
T 3u5t_A 26 TNKVAIVTG-ASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGG-KALTAQADVSDPAAVRRLFATAEEAF 103 (267)
T ss_dssp -CCEEEEES-CSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 366677555 5577787777655333 366665 5677788888888877764 4667788887643211 11
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHH----HHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~----l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
+..|.++..|--...+.+ ...+.++... ...-...++..++..+ +.+|.||+.+.+
T Consensus 104 g~iD~lvnnAG~~~~~~~-------~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~----~~~g~iv~isS~ 163 (267)
T 3u5t_A 104 GGVDVLVNNAGIMPLTTI-------AETGDAVFDRVIAVNLKGTFNTLREAAQRL----RVGGRIINMSTS 163 (267)
T ss_dssp SCEEEEEECCCCCCCCCG-------GGCCHHHHHHHHHHHHHHHHHHHHHHHHHE----EEEEEEEEECCT
T ss_pred CCCCEEEECCCCCCCCCh-------hhCCHHHHHHHHHHHHHHHHHHHHHHHHHH----hhCCeEEEEeCh
Confidence 478999986643322221 1233333332 2222334566666655 678999887643
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=83.21 E-value=8.8 Score=35.72 Aligned_cols=79 Identities=10% Similarity=0.052 Sum_probs=55.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---cC-----CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LG-----LN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~~-----~~ 248 (496)
.+.+||=.| |+|+.+.+++..+. ....|++++.+..++..+.+.+...+. ++.++..|..+.... +. .+
T Consensus 12 ~~k~vlItG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 89 (260)
T 3awd_A 12 DNRVAIVTG-GAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGH-DVSSVVMDVTNTESVQNAVRSVHEQEG 89 (260)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 356777554 66888888887553 334899999999988888777776654 477788888764321 10 14
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
.+|.|+..|-
T Consensus 90 ~id~vi~~Ag 99 (260)
T 3awd_A 90 RVDILVACAG 99 (260)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 7899998653
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.18 E-value=7.9 Score=35.72 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=52.3
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCc--------EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c---
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTG--------LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L--- 245 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g--------~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~--- 245 (496)
.+|| +.-|+||.+.+++..+-..| .|++++.+...+..+...+...+. ++.++..|..+.... +
T Consensus 3 k~vl-ITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~ 80 (244)
T 2bd0_A 3 HILL-ITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA-LTDTITADISDMADVRRLTTHI 80 (244)
T ss_dssp EEEE-EETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTC-EEEEEECCTTSHHHHHHHHHHH
T ss_pred CEEE-EECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCC-eeeEEEecCCCHHHHHHHHHHH
Confidence 4555 44567888888877553323 799999999998888777765543 577788898764211 1
Q ss_pred --CCCCcCEEEECCC
Q 010971 246 --GLNTVDRVLLDAP 258 (496)
Q Consensus 246 --~~~~fD~VLlDaP 258 (496)
..+.+|.|+..|-
T Consensus 81 ~~~~g~id~li~~Ag 95 (244)
T 2bd0_A 81 VERYGHIDCLVNNAG 95 (244)
T ss_dssp HHHTSCCSEEEECCC
T ss_pred HHhCCCCCEEEEcCC
Confidence 1247999998653
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=83.03 E-value=11 Score=36.14 Aligned_cols=123 Identities=14% Similarity=0.128 Sum_probs=69.7
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.|.+||=.| |.||.+.+++..+-. ...|+.+|.+..++..+... ++. .+.++..|..+.... + ..+
T Consensus 26 ~~k~vlVTG-as~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (277)
T 4dqx_A 26 NQRVCIVTG-GGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANE---IGS-KAFGVRVDVSSAKDAESMVEKTTAKWG 100 (277)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---HCT-TEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hCC-ceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 356666555 557788888776533 34899999999887766554 343 466777888764221 1 114
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHH----HHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC----SYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l----~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.+|.++..|--+..+.+. ..+.++.... ..-...++..++..+.. ..+|.||+.+..
T Consensus 101 ~iD~lv~nAg~~~~~~~~-------~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~--~~~g~iv~isS~ 161 (277)
T 4dqx_A 101 RVDVLVNNAGFGTTGNVV-------TIPEETWDRIMSVNVKGIFLCSKYVIPVMRR--NGGGSIINTTSY 161 (277)
T ss_dssp CCCEEEECCCCCCCBCTT-------TSCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--TTCEEEEEECCG
T ss_pred CCCEEEECCCcCCCCCcc-------cCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH--cCCcEEEEECch
Confidence 799999876433322221 2233333321 12223345555555411 246788876543
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.96 E-value=7.1 Score=37.16 Aligned_cols=80 Identities=16% Similarity=0.155 Sum_probs=53.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHH-HHcCCCeEEEEecCCCCCccc---c-----CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANL-HRMGVTNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl-~r~g~~nv~v~~~D~~~~~~~---~-----~~ 247 (496)
.|.+||=.| |+||.+.+++..+-. ...|++++.+..++..+...+ ...|. ++.++..|..+.... + ..
T Consensus 20 ~~k~~lVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~ 97 (267)
T 1vl8_A 20 RGRVALVTG-GSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGV-ETMAFRCDVSNYEEVKKLLEAVKEKF 97 (267)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 355666554 568888888876543 348999999999888877776 44454 466777888764211 1 01
Q ss_pred CCcCEEEECCCC
Q 010971 248 NTVDRVLLDAPC 259 (496)
Q Consensus 248 ~~fD~VLlDaPC 259 (496)
+.+|.|+..|-.
T Consensus 98 g~iD~lvnnAg~ 109 (267)
T 1vl8_A 98 GKLDTVVNAAGI 109 (267)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 479999986643
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=82.75 E-value=6.9 Score=38.35 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=55.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCC----------HHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc-
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMK----------ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL- 245 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s----------~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~- 245 (496)
.|.+||=.| |.||.+.+++..+- ....|+.+|.+ ..++..+...+...|. ++.++..|..+.....
T Consensus 26 ~gk~vlVTG-as~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~ 103 (322)
T 3qlj_A 26 DGRVVIVTG-AGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGG-EAVADGSNVADWDQAAG 103 (322)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTC-EEEEECCCTTSHHHHHH
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHH
Confidence 466777555 55788888877553 33489999987 7788888888877764 5777888887643211
Q ss_pred -------CCCCcCEEEECCCC
Q 010971 246 -------GLNTVDRVLLDAPC 259 (496)
Q Consensus 246 -------~~~~fD~VLlDaPC 259 (496)
..+..|.++..|-.
T Consensus 104 ~~~~~~~~~g~iD~lv~nAg~ 124 (322)
T 3qlj_A 104 LIQTAVETFGGLDVLVNNAGI 124 (322)
T ss_dssp HHHHHHHHHSCCCEEECCCCC
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 01478999886643
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.72 E-value=12 Score=35.04 Aligned_cols=120 Identities=15% Similarity=0.183 Sum_probs=68.2
Q ss_pred CCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~ 249 (496)
|.+||=.| |+||.+.+++..+.. ...|+++|.+..++..+...+ + .++.++..|..+.... + ..+.
T Consensus 6 ~k~vlVTG-as~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 80 (253)
T 1hxh_A 6 GKVALVTG-GASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---G-ERSMFVRHDVSSEADWTLVMAAVQRRLGT 80 (253)
T ss_dssp TCEEEETT-TTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C-TTEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---C-CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 55666554 567888888876543 348999999998887766554 3 2467778888764221 0 0146
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHH----HHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQ----KQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ----~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
+|.|+..|-....+.+ ...+.++.......- ..+...++..+ .+.||.||+.+.
T Consensus 81 id~lv~~Ag~~~~~~~-------~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~---~~~~g~iv~isS 138 (253)
T 1hxh_A 81 LNVLVNNAGILLPGDM-------ETGRLEDFSRLLKINTESVFIGCQQGIAAM---KETGGSIINMAS 138 (253)
T ss_dssp CCEEEECCCCCCCBCT-------TTCCHHHHHHHHHHHTHHHHHHHHHHHHHH---TTTCEEEEEECC
T ss_pred CCEEEECCCCCCCCCc-------ccCCHHHHHHHHHhhcHHHHHHHHHHHHHH---HHcCCEEEEEcc
Confidence 8999986643222211 123444433322211 22344455544 244588887654
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=82.62 E-value=14 Score=35.57 Aligned_cols=125 Identities=11% Similarity=0.125 Sum_probs=71.1
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHH-HHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKAS-RLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~-rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|.+||=.| |.||.+.+++..+-. ...|+.++.+.. ....+.+.+...|. ++.++..|..+..... ..
T Consensus 46 ~gk~vlVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~ 123 (291)
T 3ijr_A 46 KGKNVLITG-GDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGV-KCVLLPGDLSDEQHCKDIVQETVRQL 123 (291)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTC-CEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 466777655 557788888776543 347888888765 44555555665554 5777888987642211 11
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~----~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
+.+|.++..|--.. .... ....+.++..... .-...++..++..+ +.+|.||+.+..
T Consensus 124 g~iD~lvnnAg~~~-----~~~~-~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~----~~~g~iv~isS~ 184 (291)
T 3ijr_A 124 GSLNILVNNVAQQY-----PQQG-LEYITAEQLEKTFRINIFSYFHVTKAALSHL----KQGDVIINTASI 184 (291)
T ss_dssp SSCCEEEECCCCCC-----CCSS-GGGCCHHHHHHHHHHHTHHHHHHHHHHHTTC----CTTCEEEEECCT
T ss_pred CCCCEEEECCCCcC-----CCCC-cccCCHHHHHHHHHHHhHHHHHHHHHHHHHH----hhCCEEEEEech
Confidence 47899998663221 1110 1122334333222 22334555555554 788998886543
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=82.50 E-value=9.1 Score=36.60 Aligned_cols=127 Identities=13% Similarity=0.113 Sum_probs=67.3
Q ss_pred CCCeEeeccCCC-chHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHH-HHcCCCeEEEEecCCCCCccc---c-----C
Q 010971 178 EKERVIDMAAAP-GGKTTYIAALMKN-TGLIYANEMKASRLKSLTANL-HRMGVTNTIVCNYDGNELPKV---L-----G 246 (496)
Q Consensus 178 ~g~~VLDmcAgp-GgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl-~r~g~~nv~v~~~D~~~~~~~---~-----~ 246 (496)
.|.+||=.|++. ||.+.+++..+-. ...|++++.+.. .....+.+ ...| ++.++..|..+.... + .
T Consensus 20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~ 96 (285)
T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKGFG--SDLVVKCDVSLDEDIKNLKKFLEEN 96 (285)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467888888763 8888888876533 348889998875 22222222 2233 255677888764221 1 1
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~----~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
.+.+|.|+..|-......+. .| ....+.++..... .-...++..++..+ .+.+|+||+.+.
T Consensus 97 ~g~iD~lv~~Ag~~~~~~~~-~~--~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~---~~~~g~iv~isS 161 (285)
T 2p91_A 97 WGSLDIIVHSIAYAPKEEFK-GG--VIDTSREGFKIAMDISVYSLIALTRELLPLM---EGRNGAIVTLSY 161 (285)
T ss_dssp TSCCCEEEECCCCCCGGGGS-SC--GGGCCHHHHHHHHHHHTHHHHHHHHHHGGGG---TTSCCEEEEEEC
T ss_pred cCCCCEEEECCCCCCcccCC-CC--cccCCHHHHHHHHHHhhHHHHHHHHHHHHHH---HHcCCEEEEEcc
Confidence 25789999876422110000 01 1123444333222 22233455555544 235788887654
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.48 E-value=6.7 Score=37.80 Aligned_cols=80 Identities=13% Similarity=0.090 Sum_probs=55.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.+.+||=.| |.||.+.+++..+. ....|+.+|.+..++..+...+...|. .+.++..|..+.... + ..+
T Consensus 27 ~~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 104 (283)
T 3v8b_A 27 PSPVALITG-AGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGG-QAIALEADVSDELQMRNAVRDLVLKFG 104 (283)
T ss_dssp CCCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 466677555 55778888777553 334899999999999888888776654 467778888764211 1 115
Q ss_pred CcCEEEECCCC
Q 010971 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~fD~VLlDaPC 259 (496)
..|.++..|--
T Consensus 105 ~iD~lVnnAg~ 115 (283)
T 3v8b_A 105 HLDIVVANAGI 115 (283)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999987643
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=82.46 E-value=7.2 Score=36.72 Aligned_cols=78 Identities=17% Similarity=0.144 Sum_probs=53.0
Q ss_pred CCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEecCCCCCccc---c-----CCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRM-GVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~-g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
|.+||=. -|+||.+.+++..+-. ...|++++.+..++..+...+... |. ++.++..|..+.... + ..+
T Consensus 7 ~k~vlVT-Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 84 (263)
T 3ai3_A 7 GKVAVIT-GSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGV-RVLEVAVDVATPEGVDAVVESVRSSFG 84 (263)
T ss_dssp TCEEEEE-SCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEE-CCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5566644 4568888888876543 348999999999888777776554 53 567778888764221 1 014
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
.+|.|+..|-
T Consensus 85 ~id~lv~~Ag 94 (263)
T 3ai3_A 85 GADILVNNAG 94 (263)
T ss_dssp SCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 7899998664
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=82.28 E-value=8.6 Score=36.74 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=53.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCC----------------HHHHHHHHHHHHHcCCCeEEEEecCCCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMK----------------ASRLKSLTANLHRMGVTNTIVCNYDGNE 240 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s----------------~~rl~~l~~nl~r~g~~nv~v~~~D~~~ 240 (496)
.|.+||=.| |.||.+.+++..+-. ...|+++|.+ ..+++.+...+...+. .+.++..|..+
T Consensus 10 ~~k~~lVTG-as~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~ 87 (286)
T 3uve_A 10 EGKVAFVTG-AARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNR-RIVTAEVDVRD 87 (286)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTC-CEEEEECCTTC
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCC-ceEEEEcCCCC
Confidence 466677555 456778777776533 3589999887 7888888777776654 57778889876
Q ss_pred Ccccc--------CCCCcCEEEECCC
Q 010971 241 LPKVL--------GLNTVDRVLLDAP 258 (496)
Q Consensus 241 ~~~~~--------~~~~fD~VLlDaP 258 (496)
..... ..+..|.++..|-
T Consensus 88 ~~~v~~~~~~~~~~~g~id~lv~nAg 113 (286)
T 3uve_A 88 YDALKAAVDSGVEQLGRLDIIVANAG 113 (286)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCc
Confidence 43211 1147999998664
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=82.22 E-value=9.9 Score=36.79 Aligned_cols=79 Identities=19% Similarity=0.196 Sum_probs=54.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCC------------HHHHHHHHHHHHHcCCCeEEEEecCCCCCccc
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMK------------ASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s------------~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~ 244 (496)
.|.+||=.|+ .||.+.+++..+- ....|+++|.+ ..++..+...+...|. ++.++..|..+....
T Consensus 27 ~gk~~lVTGa-s~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v 104 (299)
T 3t7c_A 27 EGKVAFITGA-ARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGR-RIIASQVDVRDFDAM 104 (299)
T ss_dssp TTCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHH
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHH
Confidence 4667775554 5677777776553 33489999987 7888888888877764 577788898764321
Q ss_pred c--------CCCCcCEEEECCC
Q 010971 245 L--------GLNTVDRVLLDAP 258 (496)
Q Consensus 245 ~--------~~~~fD~VLlDaP 258 (496)
. ..+..|.++..|-
T Consensus 105 ~~~~~~~~~~~g~iD~lv~nAg 126 (299)
T 3t7c_A 105 QAAVDDGVTQLGRLDIVLANAA 126 (299)
T ss_dssp HHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHhCCCCEEEECCC
Confidence 1 1157999988664
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.04 E-value=13 Score=34.22 Aligned_cols=76 Identities=18% Similarity=0.128 Sum_probs=48.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc---cc-CCCCcCE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---VL-GLNTVDR 252 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~---~~-~~~~fD~ 252 (496)
.|.+||=. -|+|+.+.+++..+. ....|++++.+...+..+...+ .++.++..|..+... .+ ..+.+|.
T Consensus 6 ~~~~vlVT-GasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~id~ 79 (244)
T 1cyd_A 6 SGLRALVT-GAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC-----PGIEPVCVDLGDWDATEKALGGIGPVDL 79 (244)
T ss_dssp TTCEEEEE-STTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-----TTCEEEECCTTCHHHHHHHHTTCCCCSE
T ss_pred CCCEEEEe-CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-----cCCCcEEecCCCHHHHHHHHHHcCCCCE
Confidence 45677744 467888888887653 3348999999988776654432 234455778776422 11 1246899
Q ss_pred EEECCCC
Q 010971 253 VLLDAPC 259 (496)
Q Consensus 253 VLlDaPC 259 (496)
|+..|-.
T Consensus 80 vi~~Ag~ 86 (244)
T 1cyd_A 80 LVNNAAL 86 (244)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 9986643
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.89 E-value=5 Score=37.52 Aligned_cols=79 Identities=14% Similarity=0.076 Sum_probs=48.7
Q ss_pred CCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEecCCCCCccc---c---
Q 010971 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGV------TNTIVCNYDGNELPKV---L--- 245 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~------~nv~v~~~D~~~~~~~---~--- 245 (496)
+.+||= .-|+|+.+.+++..+- ....|++++.+...+..+...+...|. .++.++..|..+.... +
T Consensus 7 ~k~vlI-TGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 85 (264)
T 2pd6_A 7 SALALV-TGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQV 85 (264)
T ss_dssp TCEEEE-ETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHHH
T ss_pred CCEEEE-ECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHHH
Confidence 556664 4566888888887553 334899999999888777665554441 3567778888764221 1
Q ss_pred --CCCCc-CEEEECCC
Q 010971 246 --GLNTV-DRVLLDAP 258 (496)
Q Consensus 246 --~~~~f-D~VLlDaP 258 (496)
..+.. |.|+..|-
T Consensus 86 ~~~~g~i~d~vi~~Ag 101 (264)
T 2pd6_A 86 QACFSRPPSVVVSCAG 101 (264)
T ss_dssp HHHHSSCCSEEEECCC
T ss_pred HHHhCCCCeEEEECCC
Confidence 01345 99998664
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.82 E-value=1.7 Score=42.45 Aligned_cols=79 Identities=8% Similarity=0.057 Sum_probs=51.5
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc---ccCCCCcCEEE
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---VLGLNTVDRVL 254 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~---~~~~~~fD~VL 254 (496)
+.+|| +.-|+|+.+.+++..+... ..|++++.+......+...+....-.++.++..|..+... .+....+|.|+
T Consensus 5 ~~~vl-VTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 83 (341)
T 3enk_A 5 KGTIL-VTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI 83 (341)
T ss_dssp SCEEE-EETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred CcEEE-EecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence 55677 4557899999988765433 4899999876665555555544433456778888876432 22113789999
Q ss_pred ECCC
Q 010971 255 LDAP 258 (496)
Q Consensus 255 lDaP 258 (496)
..|-
T Consensus 84 h~A~ 87 (341)
T 3enk_A 84 HFAA 87 (341)
T ss_dssp ECCC
T ss_pred ECcc
Confidence 8654
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=81.70 E-value=12 Score=35.08 Aligned_cols=79 Identities=15% Similarity=0.118 Sum_probs=54.1
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.|.+||=.| |+||.+.+++..+-.. ..|++++.+..++..+.+.+...|. .+.++..|..+.... + ..+
T Consensus 13 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 90 (260)
T 2zat_A 13 ENKVALVTA-STDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGL-SVTGTVCHVGKAEDRERLVAMAVNLHG 90 (260)
T ss_dssp TTCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356677554 6688888888765433 4899999999998888777776654 466677887654211 1 014
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
.+|.|+..|-
T Consensus 91 ~iD~lv~~Ag 100 (260)
T 2zat_A 91 GVDILVSNAA 100 (260)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999998764
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=81.60 E-value=5.9 Score=36.60 Aligned_cols=75 Identities=17% Similarity=0.126 Sum_probs=47.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-CCCCcCE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-GLNTVDR 252 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-~~~~fD~ 252 (496)
.|.+||=. -|+|+.+.+++..+.. ...|++++.+..+++.+...+ .++.++..|..+.... + ..+.+|.
T Consensus 6 ~~k~vlIT-GasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~id~ 79 (244)
T 3d3w_A 6 AGRRVLVT-GAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC-----PGIEPVCVDLGDWEATERALGSVGPVDL 79 (244)
T ss_dssp TTCEEEEE-STTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-----TTCEEEECCTTCHHHHHHHHTTCCCCCE
T ss_pred CCcEEEEE-CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----CCCCEEEEeCCCHHHHHHHHHHcCCCCE
Confidence 46677744 4568888888876533 348999999988877665432 1334557787764211 1 1246899
Q ss_pred EEECCC
Q 010971 253 VLLDAP 258 (496)
Q Consensus 253 VLlDaP 258 (496)
|+..|-
T Consensus 80 vi~~Ag 85 (244)
T 3d3w_A 80 LVNNAA 85 (244)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 998553
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=81.57 E-value=13 Score=35.55 Aligned_cols=123 Identities=12% Similarity=0.115 Sum_probs=70.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHH-HHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKAS-RLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~-rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|.+||=.| |+||.+.+++..+... ..|++++.+.. .++.+.+.+...|. ++.++..|..+..... ..
T Consensus 28 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 105 (283)
T 1g0o_A 28 EGKVALVTG-AGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVVEDIVRMFEEAVKIF 105 (283)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCC-CeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 356677555 5678888888765433 47888888754 35666666666654 4667778877642110 01
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~----~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
+.+|.|+..|-....+. .+..+.++..... .-...++..++..+ +.+|.||+.+.
T Consensus 106 g~iD~lv~~Ag~~~~~~-------~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~----~~~g~iv~isS 164 (283)
T 1g0o_A 106 GKLDIVCSNSGVVSFGH-------VKDVTPEEFDRVFTINTRGQFFVAREAYKHL----EIGGRLILMGS 164 (283)
T ss_dssp SCCCEEEECCCCCCCCC-------GGGCCHHHHHHHHHHHTHHHHHHHHHHHHHS----CTTCEEEEECC
T ss_pred CCCCEEEECCCcCCCCC-------cccCCHHHHHHHHHHhhHHHHHHHHHHHHHH----hcCCeEEEEec
Confidence 47899998664322221 1223444333222 22233455555554 67788887654
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.52 E-value=5.7 Score=37.81 Aligned_cols=121 Identities=16% Similarity=0.101 Sum_probs=67.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.| |+||.+.+++..+.. ...|++++.+..+++.+.+.+ + .++.++..|..+..... ..+
T Consensus 5 ~~k~vlITG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (263)
T 2a4k_A 5 SGKTILVTG-AASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL---E-AEAIAVVADVSDPKAVEAVFAEALEEFG 79 (263)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC---C-SSEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---c-CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 355666554 567888888776543 348999999988776654433 3 35777888887643211 114
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~----~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.+|.|+..|-....+.+ +..+.++..... .-...++..++..+ +.+|.||+.+..
T Consensus 80 ~iD~lvnnAg~~~~~~~-------~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~----~~~g~iv~isS~ 138 (263)
T 2a4k_A 80 RLHGVAHFAGVAHSALS-------WNLPLEAWEKVLRVNLTGSFLVARKAGEVL----EEGGSLVLTGSV 138 (263)
T ss_dssp CCCEEEEGGGGTTTTC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHC----CTTCEEEEECCC
T ss_pred CCcEEEECCCCCCCCCh-------hhCCHHHHHHHHHHHhHHHHHHHHHHHHHH----hcCCEEEEEecc
Confidence 68999986643222211 223333332221 22233455555543 447888876543
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=81.47 E-value=9.5 Score=35.76 Aligned_cols=79 Identities=11% Similarity=0.109 Sum_probs=54.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---cC------C
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LG------L 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~~------~ 247 (496)
.+.+||=.| |+|+.+.+++..+-. ...|++++.+..++..+...+...+. ++.++..|..+.... +. .
T Consensus 13 ~~k~vlITG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 90 (266)
T 1xq1_A 13 KAKTVLVTG-GTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASLRPEREKLMQTVSSMFG 90 (266)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 356677444 578888888876533 34899999999998888877776654 466777888764211 10 1
Q ss_pred CCcCEEEECCC
Q 010971 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~fD~VLlDaP 258 (496)
+.+|.|+..|-
T Consensus 91 ~~id~li~~Ag 101 (266)
T 1xq1_A 91 GKLDILINNLG 101 (266)
T ss_dssp TCCSEEEEECC
T ss_pred CCCcEEEECCC
Confidence 56899998653
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=81.40 E-value=12 Score=34.53 Aligned_cols=78 Identities=9% Similarity=0.023 Sum_probs=51.1
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.|.+||=.| |+|+.+.+++..+. ....|++++.+...++.+...+... .++.++..|..+.... + ..+
T Consensus 5 ~~k~vlVtG-asggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (251)
T 1zk4_A 5 DGKVAIITG-GTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP--DQIQFFQHDSSDEDGWTKLFDATEKAFG 81 (251)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCcEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcc--CceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 355666444 67888888887553 3348999999998877766555322 3577888888764211 1 014
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
.+|.|+..|-
T Consensus 82 ~id~li~~Ag 91 (251)
T 1zk4_A 82 PVSTLVNNAG 91 (251)
T ss_dssp SCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899998664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 496 | ||||
| d1ixka_ | 313 | c.66.1.38 (A:) Hypothetical methyltransferase PH13 | 2e-68 | |
| d1sqga2 | 284 | c.66.1.38 (A:145-428) Ribosomal RNA small subunit | 3e-54 | |
| d2b9ea1 | 293 | c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) | 4e-54 | |
| d1wxxa2 | 318 | c.66.1.51 (A:65-382) Hypothetical protein TTHA1280 | 5e-10 | |
| d2as0a2 | 324 | c.66.1.51 (A:73-396) Hypothetical protein PH1915, | 2e-07 | |
| d2b78a2 | 317 | c.66.1.51 (A:69-385) Hypothetical protein SMu776, | 6e-06 | |
| d1m6ya2 | 192 | c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransf | 1e-05 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 1e-04 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 7e-04 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 0.001 | |
| d1wg8a2 | 182 | c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransf | 0.001 |
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 219 bits (559), Expect = 2e-68
Identities = 115/312 (36%), Positives = 176/312 (56%), Gaps = 10/312 (3%)
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
GY++ +++ + + E+ EKP P C R NTLK +DL L +G
Sbjct: 12 LGYSKLFADRYFQLWGE-RAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKR 70
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
W+K G + I +TPE++ G +Q ASS P +AL P+ E V DMAAAPGG
Sbjct: 71 -VPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGG 129
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
KT+Y+A LM+N G+IYA ++ +RL+ NL R+GV N I+ + + ++ D
Sbjct: 130 KTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNV--EFD 187
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
++LLDAPC+G+G I K+ K +++++DI+ C LQ +L+ ++++ K GG +VYS
Sbjct: 188 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVL----KPGGILVYS 243
Query: 312 TCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHN 371
TCS+ ENE VI +AL DV+L+P L +G ++ RR YP VH
Sbjct: 244 TCSLEPEENEFVIQWALDNFDVELLP--LKYGEPALTNPFGIELSEEIKNARRLYPDVHE 301
Query: 372 MDGFFVAKLKKM 383
GFF+AK++K+
Sbjct: 302 TSGFFIAKIRKL 313
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 181 bits (460), Expect = 3e-54
Identities = 87/308 (28%), Positives = 143/308 (46%), Gaps = 27/308 (8%)
Query: 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKW 135
+L+ L + +P + ++E+ + P+ LR N R +L G+ P + +
Sbjct: 3 SWLLKRLQKAYPE-QWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADY 61
Query: 136 SKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTY 195
V ++ P+ A P + G+ +Q AS+ + LAPQ E ++D+ AAPGGKTT+
Sbjct: 62 PDA--VRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTH 119
Query: 196 IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255
I + + A ++ RL + NL R+G+ T+ + G DR+LL
Sbjct: 120 ILEVAPEAQ-VVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG-RYPSQWCGEQQFDRILL 177
Query: 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315
DAPCS TGVI + +K + DI + + LQ +++ A + K+GG +VY+TCS+
Sbjct: 178 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHL----KTGGTLVYATCSV 233
Query: 316 MVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDG 374
+ EN I L++ D +L G + ++ P DG
Sbjct: 234 LPEENSLQIKAFLQRTADAELCETGTPE-----------------QPGKQNLPGAEEGDG 276
Query: 375 FFVAKLKK 382
FF AKL K
Sbjct: 277 FFYAKLIK 284
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Score = 181 bits (460), Expect = 4e-54
Identities = 87/302 (28%), Positives = 133/302 (44%), Gaps = 32/302 (10%)
Query: 103 PICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKV----------------GLVVYDSQ 146
P +R NTLKT D+ D +G + + L+V+ +Q
Sbjct: 3 PRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQ 62
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
+ P Y AG +LQ +S LP M L P VID AAPG KT+++AAL+KN G I
Sbjct: 63 TDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKI 122
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT-VDRVLLDAPCSGTGVI 265
+A ++ A RL S+ L R GV+ + D + V +LLD CSG+G+
Sbjct: 123 FAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMP 182
Query: 266 SKDESVKTSKSLED--IQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
S+ + + + + Q++ + A+ +VYSTCS+ ENE V
Sbjct: 183 SRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQ-----RLVYSTCSLCQEENEDV 237
Query: 324 IDYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381
+ AL++ +L P + +G F P E R P GFFVA ++
Sbjct: 238 VRDALQQNPGAFRLAPALPAWPHRGLSTF------PGAEHCLRASPETTLSSGFFVAVIE 291
Query: 382 KM 383
++
Sbjct: 292 RV 293
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Score = 58.3 bits (140), Expect = 5e-10
Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 26/171 (15%)
Query: 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231
+ + ER +D+ + GG + L + A + A L+ N G+ N
Sbjct: 139 LYMERFRGERALDVFSYAGG---FALHLALGFREVVAVDSSAEALRRAEENARLNGLGNV 195
Query: 232 IVCNYDGNELPK--VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQ 289
V + +L + D V+LD P G D+++ K+
Sbjct: 196 RVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKK-------------DVERAYRAYKE 242
Query: 290 LILAAIDMVDANSKSGGYIVYSTCSIMVTEN--EAVIDYALK--KRDVKLV 336
+ L AI ++ K GG + ++CS +TE A++ A + R +++V
Sbjct: 243 VNLRAIKLL----KEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVV 289
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 50.3 bits (119), Expect = 2e-07
Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 26/164 (15%)
Query: 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI-VCNYDG 238
+RV+D+ GG I A + + + +++ N GV + +
Sbjct: 147 DRVLDVFTYTGGFA--IHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSA 204
Query: 239 NELPKVLGL--NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAID 296
E + L D V+LD P + K L+ + + A ++
Sbjct: 205 FEEMEKLQKKGEKFDIVVLDPPAFV----------QHEKDLKAGLRA---YFNVNFAGLN 251
Query: 297 MVDANSKSGGYIVYSTCSIMVTEN---EAVIDYALK-KRDVKLV 336
+V K GG +V +CS V + +I K + +K++
Sbjct: 252 LV----KDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKML 291
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Score = 46.0 bits (108), Expect = 6e-06
Identities = 34/306 (11%), Positives = 83/306 (27%), Gaps = 42/306 (13%)
Query: 71 YYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLD 130
+ + G ++ + L SF + + L R +D
Sbjct: 32 FNQDGDSFGGVTIDCYGDFVLFSWYNSFVYQIRDEIVAAFRQVYPNFLGAYEKIRFKGID 91
Query: 131 PLSKWSKVGLV-------VYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVI 183
+S + M G ++ Q + A + V+
Sbjct: 92 NVSAHLYGQEAPEQFLILENGISYNVFLNDGLMTGIFLDQRQVRNELINGSAAGK--TVL 149
Query: 184 DMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243
++ + + +AA M + ++ A+ + +
Sbjct: 150 NLFSYTAAFS--VAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY 207
Query: 244 VLGL----NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVD 299
T D +++D P + K + + K +LI ++++
Sbjct: 208 FKYARRHHLTYDIIIIDPPSFA----------RNKKEVFSVSKD---YHKLIRQGLEIL- 253
Query: 300 ANSKSGGYIVYSTCSIMVTEN--EAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHP 357
G I+ ST + +T + + I+ K+ + D + + +
Sbjct: 254 ---SENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYL----DLQQLPS----DFAVNV 302
Query: 358 SLEKTR 363
E +
Sbjct: 303 QDESSN 308
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Score = 44.0 bits (103), Expect = 1e-05
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Query: 170 PVM------ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL 223
PVM L P++++ ++D GG + I I ++ + L+ L
Sbjct: 9 PVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKL 67
Query: 224 HRMGVTNTIVCN--YDGNELPKVLGLNTVDRVLLDAPCS 260
++ + + L K LG+ VD +L+D S
Sbjct: 68 KEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVS 106
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (97), Expect = 1e-04
Identities = 13/99 (13%), Positives = 34/99 (34%), Gaps = 11/99 (11%)
Query: 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT- 229
+ + + V++ + GG + +++ + + G + + E++ N +
Sbjct: 91 LSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSW 150
Query: 230 ----------NTIVCNYDGNELPKVLGLNTVDRVLLDAP 258
N + D + + + T D V LD
Sbjct: 151 KLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDML 189
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 38.9 bits (90), Expect = 7e-04
Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 1/98 (1%)
Query: 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL 223
A+ + + + V+ + A G ++++ ++ G I+ E L+ L +
Sbjct: 59 GAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIV 118
Query: 224 HRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSG 261
I+ + E + L + VD + D
Sbjct: 119 EERRNIVPILGDATKPEEYRAL-VPKVDVIFEDVAQPT 155
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 38.1 bits (88), Expect = 0.001
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 2/95 (2%)
Query: 165 ASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224
A+ L L + ERV+ + AA G +++A ++ IYA E A + L +
Sbjct: 43 AAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGI-IYAVEYSAKPFEKLLELVR 101
Query: 225 RMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259
++ + + + VD + D
Sbjct: 102 ERNNIIPLLFDASKPWKYSGI-VEKVDLIYQDIAQ 135
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Score = 37.4 bits (86), Expect = 0.001
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 10/102 (9%)
Query: 167 SFLPVM------ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLT 220
+ +PV+ LA + +D G + +++ G + + +
Sbjct: 1 THVPVLYQEALDLLAVRPGGVYVDATLGGAG---HARGILERGGRVIGLDQDPEAVAR-A 56
Query: 221 ANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT 262
LH G+T LG+ VD +L D S
Sbjct: 57 KGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSF 98
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 496 | |||
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 100.0 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 100.0 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.85 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.77 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.76 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.59 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.57 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.53 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.53 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.5 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.5 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.5 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.49 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.49 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.49 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.42 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.41 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.38 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.36 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.35 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.33 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.27 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.26 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.26 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.24 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.23 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.22 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.21 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.2 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.18 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.18 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.18 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.14 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.14 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.08 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.06 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.06 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.05 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.05 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.04 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.04 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.03 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.03 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.03 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 99.03 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.0 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 98.99 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.99 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.99 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 98.97 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.96 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.91 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 98.9 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 98.89 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.89 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.88 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 98.87 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.86 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.85 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 98.82 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.8 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 98.79 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.73 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.73 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.7 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.7 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.69 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 98.68 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.68 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.67 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.59 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.55 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.55 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.55 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.54 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.54 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 98.52 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.49 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.33 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.3 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.21 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.15 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.9 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.9 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.73 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.65 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.61 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.58 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.54 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.38 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.33 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.32 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.29 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.26 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.18 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.17 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.12 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.11 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 97.04 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 97.0 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.93 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 96.9 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 96.89 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.83 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 96.79 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.72 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.67 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.65 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.62 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 96.48 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.25 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 96.18 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.12 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.11 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.97 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.92 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.88 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.82 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 95.8 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.7 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.6 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 95.57 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.46 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 94.78 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.48 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 94.1 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 93.91 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 93.73 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 93.73 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 93.58 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.41 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 93.35 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 93.15 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 92.63 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 92.42 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 92.04 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 91.76 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 91.16 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 90.9 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 90.44 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 90.4 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 90.25 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 90.02 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 89.66 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 89.58 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 89.41 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 89.39 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 89.18 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 89.15 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 88.86 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 88.48 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 87.98 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 87.73 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 87.71 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 87.03 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 86.97 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 86.19 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 86.14 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 86.09 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 85.72 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 85.1 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 84.71 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 83.23 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 82.97 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 82.92 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 82.65 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 81.82 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 81.81 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 81.79 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 81.64 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 81.43 |
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.8e-73 Score=575.40 Aligned_cols=304 Identities=38% Similarity=0.690 Sum_probs=277.3
Q ss_pred HHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEecCCCCC
Q 010971 70 SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPI 149 (496)
Q Consensus 70 ~~y~~p~wl~~~l~~~~~~~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~~~~~i 149 (496)
.+|+||.||+++|.+.|| +++.++++++++++|+||||||+|++++++.+.|.+.|+.++++ +|++.++.+.....++
T Consensus 10 ~~~~~p~wl~~~~~~~~G-ee~~~l~~a~~~~~p~~iRvN~~k~~~e~~~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~l 87 (313)
T d1ixka_ 10 LRLGYSKLFADRYFQLWG-ERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRV-PWAKEGFCLTREPFSI 87 (313)
T ss_dssp HHTTCCHHHHHHHHHHHT-THHHHHHHHTTSCCCCEEEECTTTSCHHHHHHHHHHTTCEEEEE-TTEEEEEEEEECSSCG
T ss_pred HHcCCCHHHHHHHHHHhh-HHHHHHHHHcCCCCCeEEEEcCCcCCHHHHHHHHHhCCCceEEC-CCCcchhhhccCCCcc
Confidence 689999999999999999 57999999999999999999999999999999999999999998 8999999887666788
Q ss_pred CCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 010971 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT 229 (496)
Q Consensus 150 ~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~ 229 (496)
..+++|..|+|++||++|++++.+|+|++|++||||||||||||++|+++|.+.|.|+|+|+++.|++.+..|++++|+.
T Consensus 88 ~~~~~~~~G~~~vQD~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~ 167 (313)
T d1ixka_ 88 TSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL 167 (313)
T ss_dssp GGSHHHHTTSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC
T ss_pred ccCHhhhhceEEEecccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEE
Q 010971 230 NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309 (496)
Q Consensus 230 nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LV 309 (496)
|+.+++.|+..++... ..||+||+||||||+|+++++|+++|.++.+++..++.+|++||.+|+.+| ||||+||
T Consensus 168 ~i~~~~~d~~~~~~~~--~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l----k~gG~lV 241 (313)
T d1ixka_ 168 NVILFHSSSLHIGELN--VEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVL----KPGGILV 241 (313)
T ss_dssp SEEEESSCGGGGGGGC--CCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHE----EEEEEEE
T ss_pred cccccccccccccccc--ccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhhee----CCCcEEE
Confidence 9999999988876543 789999999999999999999999999999999999999999999999998 9999999
Q ss_pred EEeCCCCCcCCHHHHHHHHHhCCcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEec
Q 010971 310 YSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383 (496)
Q Consensus 310 YSTCSi~~eENE~vV~~~L~~~~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~ 383 (496)
|||||++++|||+||.+||++++++++++. .+.+++..+....|++....|+|++||.+++||||+|+|+|.
T Consensus 242 YsTCSl~~eENE~VV~~~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfFiA~l~Kv 313 (313)
T d1ixka_ 242 YSTCSLEPEENEFVIQWALDNFDVELLPLK--YGEPALTNPFGIELSEEIKNARRLYPDVHETSGFFIAKIRKL 313 (313)
T ss_dssp EEESCCCGGGTHHHHHHHHHHSSEEEECCC--SSEECCSSGGGCCCCGGGGGSEEECTTTSSSCSEEEEEEEEC
T ss_pred EeeccCChHhHHHHHHHHHhcCCCEEeecc--cCCccccCccccccccccCCcEEECCCCCCcccEEEEEEEEC
Confidence 999999999999999999999999998764 344666666666778888899999999999999999999984
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-69 Score=539.62 Aligned_cols=283 Identities=30% Similarity=0.449 Sum_probs=259.2
Q ss_pred ChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEecCCCCCCCCc
Q 010971 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153 (496)
Q Consensus 74 ~p~wl~~~l~~~~~~~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~~~~~i~~~~ 153 (496)
||+||++.|.+.|| +++.+|+++++.++|+++|||+++++++++.+.|.+.|+...+. +|++.++.+. ...++..++
T Consensus 1 HP~WLv~~~~~~~g-ee~~~l~~a~~~~~p~~lRvN~~k~s~~~~~~~L~~~gi~~~~~-~~~p~~l~l~-~~~~l~~~~ 77 (284)
T d1sqga2 1 HPSWLLKRLQKAYP-EQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPH-ADYPDAVRLE-TPAPVHALP 77 (284)
T ss_dssp SCHHHHHHHHHHCT-TTHHHHHHHHTSCCCEEEEECTTTCCHHHHHHHHHHTTCCEECC-TTCTTEEEES-SCCCGGGST
T ss_pred CcHHHHHHHHHHCH-HHHHHHHHHCCCCCCeEEEECCCCCCHHHHHHHHHhcCCceeec-CCCCccceec-cccchhhCh
Confidence 79999999999999 57999999999999999999999999999999999999998888 7888888764 456788999
Q ss_pred ccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEE
Q 010971 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIV 233 (496)
Q Consensus 154 ~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v 233 (496)
+|..|+|++||.+||+++.+|++++|++||||||||||||++|++++.+ |.|+|+|+++.|++.++.+++|+|+.++.+
T Consensus 78 ~~~~G~~~vQD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~-~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~ 156 (284)
T d1sqga2 78 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVK 156 (284)
T ss_dssp TGGGTSEEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEE
T ss_pred hhhccEEEeccccccccccccCccccceeEeccCccccchhhhhhhhhh-hhhhhhhcchhhhhhHhhhhhcccccceee
Confidence 9999999999999999999999999999999999999999999999876 999999999999999999999999998877
Q ss_pred EecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 234 CNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 234 ~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
+..|.... .......||+||+||||||+|+++++|+++|.+++.++..++.+|++||.+|+++| +|||+||||||
T Consensus 157 ~~~~~~~~-~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~l----k~gG~lvYsTC 231 (284)
T d1sqga2 157 QGDGRYPS-QWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHL----KTGGTLVYATC 231 (284)
T ss_dssp ECCTTCTH-HHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGE----EEEEEEEEEES
T ss_pred eccccccc-hhcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhc----CCCceEEEeee
Confidence 77665533 22334689999999999999999999999999999999999999999999999997 99999999999
Q ss_pred CCCCcCCHHHHHHHHHhC-CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEe
Q 010971 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382 (496)
Q Consensus 314 Si~~eENE~vV~~~L~~~-~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K 382 (496)
|++++|||+||++||+++ ++++++.+.+. ..++|++||.+++||||+|+|+|
T Consensus 232 S~~~~ENE~vv~~~l~~~~~~~~~~~~~~~-----------------~~~~~~~P~~~~~dGFF~A~l~K 284 (284)
T d1sqga2 232 SVLPEENSLQIKAFLQRTADAELCETGTPE-----------------QPGKQNLPGAEEGDGFFYAKLIK 284 (284)
T ss_dssp CCCGGGTHHHHHHHHHHCTTCEECSSBCSS-----------------SBSEEECCCTTSCCSEEEEEEEC
T ss_pred cCchhhCHHHHHHHHHhCCCcEEecCCCCC-----------------CCcEEECCCCCCcccEEEEEEEC
Confidence 999999999999999987 78988764331 23479999999999999999986
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.8e-62 Score=488.22 Aligned_cols=271 Identities=32% Similarity=0.466 Sum_probs=221.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHcCCccCCC-----------------CcCCcccEEEecCCCCCCCCcccccccEEEe
Q 010971 101 PRPICLRTNTLKTRRRDLADVLINRGVNLDPL-----------------SKWSKVGLVVYDSQVPIGATPEYMAGFYMLQ 163 (496)
Q Consensus 101 ~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~-----------------~~~~~~gl~v~~~~~~i~~~~~~~~G~~~iQ 163 (496)
+.|+||||||+|++++++.+.|.+.|+.+.+. .+|++.++. ++...++..+++|..|+|++|
T Consensus 1 ~lP~~~RVNtlk~~~ee~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~-~~~~~~l~~~~~~~~G~~~~Q 79 (293)
T d2b9ea1 1 QLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLV-FPAQTDLHEHPLYRAGHLILQ 79 (293)
T ss_dssp CCCEEEEECTTTCCHHHHHHHHHHTTCEEEEECSSHHHHHTCCTTEEEECSSSTTEEE-ECTTCCCTTSHHHHTTSEEEC
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHcCCccccccccchhhhhcccccccccCCCCCeEE-eCCCCCcccChHHhCcEEEEc
Confidence 47999999999999999999999999875432 135566554 456678999999999999999
Q ss_pred CCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc
Q 010971 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243 (496)
Q Consensus 164 d~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~ 243 (496)
|.+|++++.+|++++|++||||||||||||+|||++|++.+.|+|+|+++.|++.+++|++++|+.|+.+++.|+..+..
T Consensus 80 D~sS~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~ 159 (293)
T d2b9ea1 80 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSP 159 (293)
T ss_dssp CTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCT
T ss_pred CCcccccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877643
Q ss_pred cc-CCCCcCEEEECCCCCCCCcccCCchhhccCCHHH--HHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCC
Q 010971 244 VL-GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLED--IQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN 320 (496)
Q Consensus 244 ~~-~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~--i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eEN 320 (496)
.. ....||+||+||||||+|+++++|+++|.++..+ +..++.+|++||.+|+. + +|||+|||||||++++||
T Consensus 160 ~~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~~-l----~~gG~lvYsTCSl~~~EN 234 (293)
T d2b9ea1 160 SDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALT-F----PSLQRLVYSTCSLCQEEN 234 (293)
T ss_dssp TCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTT-C----TTCCEEEEEESCCCGGGT
T ss_pred cccccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhhh-c----ccccEEEEeeccCChhHh
Confidence 22 1267999999999999999999999999876655 68999999999999985 4 899999999999999999
Q ss_pred HHHHHHHHHhCC--cEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEec
Q 010971 321 EAVIDYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383 (496)
Q Consensus 321 E~vV~~~L~~~~--~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~ 383 (496)
|+||++||++++ +++++....+...|+..+ +....|+|++||.+++||||+|+|+|.
T Consensus 235 e~vV~~~L~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~r~~P~~~~~dGfFiA~L~ki 293 (293)
T d2b9ea1 235 EDVVRDALQQNPGAFRLAPALPAWPHRGLSTF------PGAEHCLRASPETTLSSGFFVAVIERV 293 (293)
T ss_dssp HHHHHHHHTTSTTTEEECCCCTTCCCBCCSSS------TTGGGSEEECHHHHSSCSEEEEEEEEC
T ss_pred HHHHHHHHHhCCCCEEeccCcccccccccccC------CCCCCEEEECCCCCCccCEEEEEEEEC
Confidence 999999999873 788877655555555432 345678999999999999999999984
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=5e-22 Score=199.90 Aligned_cols=164 Identities=23% Similarity=0.278 Sum_probs=131.5
Q ss_pred CCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe
Q 010971 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (496)
Q Consensus 151 ~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n 230 (496)
-...++.|+|..|.....+ +....|.+|||+|||+|++|+++|.- ...|+++|+|+.+++.+++|++++|+.+
T Consensus 122 l~~~~~tG~flDqr~~r~~----~~~~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~ 194 (318)
T d1wxxa2 122 LRAGQKTGAYLDQRENRLY----MERFRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGN 194 (318)
T ss_dssp CSTTSCCCCCGGGHHHHHH----GGGCCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred chhccccccchhhhhhHHH----HHHhCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCC
Confidence 3457889999999876533 22346999999999999999988753 3689999999999999999999999999
Q ss_pred EEEEecCCCCCcccc--CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEE
Q 010971 231 TIVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI 308 (496)
Q Consensus 231 v~v~~~D~~~~~~~~--~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~L 308 (496)
+.++..|+.++...+ ....||+|++||||++.+. .++......|.+|+..|+++| +|||.|
T Consensus 195 ~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~-------------~~~~~~~~~~~~l~~~a~~lL----kpGG~L 257 (318)
T d1wxxa2 195 VRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGK-------------KDVERAYRAYKEVNLRAIKLL----KEGGIL 257 (318)
T ss_dssp EEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCST-------------TSHHHHHHHHHHHHHHHHHTE----EEEEEE
T ss_pred cceeeccHHHHhhhhHhhhcCCCEEEEcCCccccch-------------HHHHHHHHHHHHHHHHHHHHc----CCCCEE
Confidence 999999987653222 2368999999999998762 346667778899999999997 999999
Q ss_pred EEEeCC--CCCcCCHHHHHHHHHhC--CcEEeec
Q 010971 309 VYSTCS--IMVTENEAVIDYALKKR--DVKLVPC 338 (496)
Q Consensus 309 VYSTCS--i~~eENE~vV~~~L~~~--~~~lv~~ 338 (496)
|||||| +..++.+++|..+.... .++++..
T Consensus 258 v~~scs~~~~~~~f~~~v~~a~~~a~~~~~~~~~ 291 (318)
T d1wxxa2 258 ATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVEK 291 (318)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEeCCcccCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 999999 45556677887776654 4666543
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.77 E-value=3.3e-19 Score=179.50 Aligned_cols=163 Identities=21% Similarity=0.210 Sum_probs=127.2
Q ss_pred cccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eE
Q 010971 153 PEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NT 231 (496)
Q Consensus 153 ~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv 231 (496)
..+..|.|..|.....+...++ ++|.+|||+|||+|++|++++.. +.+.|+++|+++..++.+++|++++|+. ++
T Consensus 122 ~~~~tG~flDqr~~r~~~~~~~--~~g~~VLDl~~g~G~~si~~a~~--ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~ 197 (324)
T d2as0a2 122 RGQKTGFFLDQRENRLALEKWV--QPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRM 197 (324)
T ss_dssp SSSSSCCCSTTHHHHHHHGGGC--CTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGE
T ss_pred cccccCcccchhhHHHHHHhhc--CCCCeeecccCcccchhhhhhhc--CCcEEEeecCCHHHHHHHHHHHHHcCCCccc
Confidence 3567899999987766665443 67999999999999999987754 4569999999999999999999999995 58
Q ss_pred EEEecCCCCCcccc--CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEE
Q 010971 232 IVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309 (496)
Q Consensus 232 ~v~~~D~~~~~~~~--~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LV 309 (496)
.++++|+..+...+ ....||+|++||||++.+ ..+.......+.+|+..|+++| +|||.||
T Consensus 198 ~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~-------------~~~~~~~~~~y~~l~~~a~~ll----~pGG~lv 260 (324)
T d2as0a2 198 KFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQH-------------EKDLKAGLRAYFNVNFAGLNLV----KDGGILV 260 (324)
T ss_dssp EEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSS-------------GGGHHHHHHHHHHHHHHHHTTE----EEEEEEE
T ss_pred eeeechhhhhhHHHHhccCCCCchhcCCccccCC-------------HHHHHHHHHHHHHHHHHHHHHc----CCCcEEE
Confidence 89999986542211 236899999999998754 3445566677889999999997 9999999
Q ss_pred EEeCCCCCc--CCHHHHHHHHHhCC--cEEe
Q 010971 310 YSTCSIMVT--ENEAVIDYALKKRD--VKLV 336 (496)
Q Consensus 310 YSTCSi~~e--ENE~vV~~~L~~~~--~~lv 336 (496)
|||||-+.. +-.++|..+..+.+ ++++
T Consensus 261 ~~s~s~~~~~~~f~~~v~~a~~~~gr~~~~~ 291 (324)
T d2as0a2 261 TCSCSQHVDLQMFKDMIIAAGAKAGKFLKML 291 (324)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTTEEEEES
T ss_pred EEeCCccCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 999996654 33456665555543 4444
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.76 E-value=1.6e-19 Score=181.38 Aligned_cols=169 Identities=14% Similarity=0.117 Sum_probs=124.7
Q ss_pred CCCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q 010971 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV 228 (496)
Q Consensus 149 i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~ 228 (496)
+.....+++|+|+.|.......+. ...+|.+|||+|||+|++|++++. .+...|+++|+|+..++.+++|++.+|+
T Consensus 117 vdl~~g~ktGlflDqR~~r~~l~~--~~~~g~~VLdlf~~~G~~sl~aa~--~ga~~V~~vD~s~~a~~~a~~N~~~n~l 192 (317)
T d2b78a2 117 VFLNDGLMTGIFLDQRQVRNELIN--GSAAGKTVLNLFSYTAAFSVAAAM--GGAMATTSVDLAKRSRALSLAHFEANHL 192 (317)
T ss_dssp ECSSSSSCCSSCGGGHHHHHHHHH--TTTBTCEEEEETCTTTHHHHHHHH--TTBSEEEEEESCTTHHHHHHHHHHHTTC
T ss_pred EEcccccccCCcHHHHHHHHHHHH--HhhCCCceeecCCCCcHHHHHHHh--CCCceEEEecCCHHHHHHHHHHHHHhcc
Confidence 344567889999988765433332 245799999999999999987665 3456899999999999999999999998
Q ss_pred C--eEEEEecCCCCCcccc--CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 010971 229 T--NTIVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304 (496)
Q Consensus 229 ~--nv~v~~~D~~~~~~~~--~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkp 304 (496)
. ++.++.+|+..+...+ ....||+|++|||+.+.. ...+..+...+.+|+..|+++| +|
T Consensus 193 ~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DPP~f~~~-------------~~~~~~~~~~~~~L~~~a~~ll----~p 255 (317)
T d2b78a2 193 DMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARN-------------KKEVFSVSKDYHKLIRQGLEIL----SE 255 (317)
T ss_dssp CCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC------------------CCCCHHHHHHHHHHHHHHTE----EE
T ss_pred cCcceEEEEccHHHHHHHHHhhcCCCCEEEEcChhhccc-------------hhHHHHHHHHHHHHHHHHHHHc----CC
Confidence 4 6899999986552211 236899999999987632 1222234456778999999997 99
Q ss_pred CcEEEEEeCCCCCc--CCHHHHHHHHHhCCcEEeec
Q 010971 305 GGYIVYSTCSIMVT--ENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 305 GG~LVYSTCSi~~e--ENE~vV~~~L~~~~~~lv~~ 338 (496)
||.|+|||||-... +-+..|..++.+.+..+...
T Consensus 256 gG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~~~~ 291 (317)
T d2b78a2 256 NGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDL 291 (317)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 99999999995544 44467777776666665543
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.59 E-value=2.5e-16 Score=157.13 Aligned_cols=148 Identities=13% Similarity=-0.012 Sum_probs=108.4
Q ss_pred CCCCcccccccEEEeCCcchhHHHhc-CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q 010971 149 IGATPEYMAGFYMLQSASSFLPVMAL-APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG 227 (496)
Q Consensus 149 i~~~~~~~~G~~~iQd~sS~l~v~~L-~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g 227 (496)
+.-+..++.|.|..|.....+....+ ....|.+|||+|||+|++|++++.. + ..|+++|.|+..++.+++|++.+|
T Consensus 102 v~~~~~~~tG~f~dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~--G-A~V~~VD~s~~al~~a~~N~~ln~ 178 (309)
T d2igta1 102 GRFTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA--G-AEVTHVDASKKAIGWAKENQVLAG 178 (309)
T ss_dssp EECCSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT--T-CEEEEECSCHHHHHHHHHHHHHHT
T ss_pred EeccCCCccccccchhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhC--C-CeEEEEeChHHHHHHHHHhhhhhc
Confidence 34567788999999998877655444 3456889999999999999987753 3 489999999999999999999999
Q ss_pred CC--eEEEEecCCCCCcccc--CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 010971 228 VT--NTIVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK 303 (496)
Q Consensus 228 ~~--nv~v~~~D~~~~~~~~--~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lk 303 (496)
+. ++.++..|+..+.... ....||+|++|||+.+.|--.. .| . +...+..|+..+..++ +
T Consensus 179 ~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~----~~--~------~~~~~~~l~~~~~~ll----~ 242 (309)
T d2igta1 179 LEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGE----VW--Q------LFDHLPLMLDICREIL----S 242 (309)
T ss_dssp CTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCC----EE--E------HHHHHHHHHHHHHHTB----C
T ss_pred ccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccch----hH--H------HHHHHHHHHHHHHHhc----C
Confidence 86 4889999987653211 2368999999999887652111 11 1 1122334566666665 9
Q ss_pred CCcEEEEEeCCC
Q 010971 304 SGGYIVYSTCSI 315 (496)
Q Consensus 304 pGG~LVYSTCSi 315 (496)
|||.++++||+-
T Consensus 243 ~~g~~ll~t~~s 254 (309)
T d2igta1 243 PKALGLVLTAYS 254 (309)
T ss_dssp TTCCEEEEEECC
T ss_pred CCCCEEEEecCC
Confidence 999766666543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.57 E-value=2.5e-14 Score=136.68 Aligned_cols=141 Identities=21% Similarity=0.196 Sum_probs=102.8
Q ss_pred chhHHHhc------CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCC
Q 010971 167 SFLPVMAL------APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240 (496)
Q Consensus 167 S~l~v~~L------~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~ 240 (496)
|-+++.++ .++||++|||+|||+|+.|.|||+.++++|.|+|+|+++.+++.+..++++.+ |+..+..|+..
T Consensus 56 SKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~--~~~~i~~d~~~ 133 (227)
T d1g8aa_ 56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR--NIVPILGDATK 133 (227)
T ss_dssp CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT--TEEEEECCTTC
T ss_pred cHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC--CceEEEEECCC
Confidence 55555443 47899999999999999999999999999999999999999999999987654 56667778765
Q ss_pred Cccc-cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe--CCCCC
Q 010971 241 LPKV-LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST--CSIMV 317 (496)
Q Consensus 241 ~~~~-~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST--CSi~~ 317 (496)
.... .....||.|++|.||.. .+..++.++..+| ||||+++.++ +|+..
T Consensus 134 ~~~~~~~~~~vD~i~~d~~~~~------------------------~~~~~l~~~~~~L----kpgG~lvi~~ka~~~~~ 185 (227)
T d1g8aa_ 134 PEEYRALVPKVDVIFEDVAQPT------------------------QAKILIDNAEVYL----KRGGYGMIAVKSRSIDV 185 (227)
T ss_dssp GGGGTTTCCCEEEEEECCCSTT------------------------HHHHHHHHHHHHE----EEEEEEEEEEEGGGTCT
T ss_pred cccccccccceEEEEEEccccc------------------------hHHHHHHHHHHhc----ccCCeEEEEEECCccCC
Confidence 4321 12367999999998742 1234677787776 9999998764 44444
Q ss_pred -cCCHHHHHHHH--HhCCcEEee
Q 010971 318 -TENEAVIDYAL--KKRDVKLVP 337 (496)
Q Consensus 318 -eENE~vV~~~L--~~~~~~lv~ 337 (496)
.+.+.+..... ...++++++
T Consensus 186 ~~~~~~v~~~v~~l~~~gf~iie 208 (227)
T d1g8aa_ 186 TKEPEQVFREVERELSEYFEVIE 208 (227)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCEEEE
Confidence 44455544332 234566554
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.53 E-value=2.1e-14 Score=140.41 Aligned_cols=115 Identities=23% Similarity=0.311 Sum_probs=95.4
Q ss_pred CcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCcc
Q 010971 165 ASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPK 243 (496)
Q Consensus 165 ~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~ 243 (496)
..+.+.+..|+++||++|||+|||+|+.|.+||..+++.|.|+++|+++.+++.+++|++++|+ .++.+...|....
T Consensus 90 kd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~-- 167 (266)
T d1o54a_ 90 KDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-- 167 (266)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC--
T ss_pred HHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc--
Confidence 3455678889999999999999999999999999998889999999999999999999999998 4588877775332
Q ss_pred ccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEE-EEeC
Q 010971 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV-YSTC 313 (496)
Q Consensus 244 ~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LV-YSTC 313 (496)
+....||.|++|.|. | | +.|.++.++| ||||+|| |+.|
T Consensus 168 -~~~~~~D~V~~d~p~---------p---~---------------~~l~~~~~~L----KpGG~lv~~~P~ 206 (266)
T d1o54a_ 168 -FDEKDVDALFLDVPD---------P---W---------------NYIDKCWEAL----KGGGRFATVCPT 206 (266)
T ss_dssp -CSCCSEEEEEECCSC---------G---G---------------GTHHHHHHHE----EEEEEEEEEESS
T ss_pred -ccccceeeeEecCCC---------H---H---------------HHHHHHHhhc----CCCCEEEEEeCc
Confidence 233679999999882 2 1 2478888886 9999986 5555
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.53 E-value=2.1e-14 Score=139.22 Aligned_cols=116 Identities=18% Similarity=0.234 Sum_probs=89.8
Q ss_pred EEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEecCC
Q 010971 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-GVTNTIVCNYDG 238 (496)
Q Consensus 160 ~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~-g~~nv~v~~~D~ 238 (496)
+|..|.+ +.+..++++||++|||+|||+|+.|.+||..+++.|.|+++|+++.+++.+++|++++ +..|+.+.+.|.
T Consensus 69 iypkD~~--~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di 146 (250)
T d1yb2a1 69 ISEIDAS--YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI 146 (250)
T ss_dssp --------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCT
T ss_pred cCHHHHH--HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeee
Confidence 3445543 3357789999999999999999999999999988899999999999999999999997 467899999998
Q ss_pred CCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 239 NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 239 ~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.... ....||+|++|.|.. | ..|.++.+.| ||||+||.+
T Consensus 147 ~~~~---~~~~fD~V~ld~p~p------------~---------------~~l~~~~~~L----KpGG~lv~~ 185 (250)
T d1yb2a1 147 ADFI---SDQMYDAVIADIPDP------------W---------------NHVQKIASMM----KPGSVATFY 185 (250)
T ss_dssp TTCC---CSCCEEEEEECCSCG------------G---------------GSHHHHHHTE----EEEEEEEEE
T ss_pred eccc---ccceeeeeeecCCch------------H---------------HHHHHHHHhc----CCCceEEEE
Confidence 7653 347899999998831 1 2477777876 999999843
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.50 E-value=1.6e-14 Score=133.04 Aligned_cols=132 Identities=20% Similarity=0.300 Sum_probs=102.9
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~ 247 (496)
+....|.|.+|++|||+|||+|..|+.+|.. .+.|+|+|+++.+++.+++|++++|+. ++.++++|+..++.. .
T Consensus 24 ~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~--~ 98 (186)
T d1l3ia_ 24 LIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK--I 98 (186)
T ss_dssp HHHHHHCCCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT--S
T ss_pred HHHHhcCCCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccc--c
Confidence 4445679999999999999999999988764 368999999999999999999999995 899999998766433 3
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHH
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~ 327 (496)
..||.|+++.+- + . ..+++..+.+.| +|||+||++.++. |+...+..+
T Consensus 99 ~~~D~v~~~~~~---~------------~----------~~~~~~~~~~~L----kpgG~lvi~~~~~---e~~~~~~~~ 146 (186)
T d1l3ia_ 99 PDIDIAVVGGSG---G------------E----------LQEILRIIKDKL----KPGGRIIVTAILL---ETKFEAMEC 146 (186)
T ss_dssp CCEEEEEESCCT---T------------C----------HHHHHHHHHHTE----EEEEEEEEEECBH---HHHHHHHHH
T ss_pred CCcCEEEEeCcc---c------------c----------chHHHHHHHHHh----CcCCEEEEEeecc---ccHHHHHHH
Confidence 789999997541 0 0 134677788876 9999999876544 666667677
Q ss_pred HHhCC--cEEee
Q 010971 328 LKKRD--VKLVP 337 (496)
Q Consensus 328 L~~~~--~~lv~ 337 (496)
+.+.+ ++++.
T Consensus 147 l~~~~~~~~~~~ 158 (186)
T d1l3ia_ 147 LRDLGFDVNITE 158 (186)
T ss_dssp HHHTTCCCEEEE
T ss_pred HHHcCCCeEEEE
Confidence 77653 44444
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.50 E-value=7.9e-14 Score=131.41 Aligned_cols=133 Identities=26% Similarity=0.280 Sum_probs=102.1
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc-CCCCcCE
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-GLNTVDR 252 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~-~~~~fD~ 252 (496)
|.++||++|||+|||+|+.+.+||+++++ |.|+|+|+++.+++.+++++++.+ |+.++..|+...+... ....+|.
T Consensus 52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~-g~V~gvDis~~~i~~a~~~a~~~~--ni~~i~~d~~~~~~~~~~~~~vd~ 128 (209)
T d1nt2a_ 52 LKLRGDERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRERN--NIIPLLFDASKPWKYSGIVEKVDL 128 (209)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHHCS--SEEEECSCTTCGGGTTTTCCCEEE
T ss_pred CCCCCCCEEEEeCCcCCHHHHHHHHhccC-CeEEEEeCCHHHHHHHHHHhhccC--CceEEEeeccCccccccccceEEE
Confidence 57899999999999999999999999864 799999999999999999998864 8889999988753321 1246777
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe---CCCCCcCCHHHHHHHHH
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST---CSIMVTENEAVIDYALK 329 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST---CSi~~eENE~vV~~~L~ 329 (496)
|+.|.++. ..+..+|.++.++| ||||+++.++ |.-.+.+.+.+.+...+
T Consensus 129 v~~~~~~~------------------------~~~~~~l~~~~~~L----kpgG~l~i~~~~~~~d~~~~~~~~~~~~~~ 180 (209)
T d1nt2a_ 129 IYQDIAQK------------------------NQIEILKANAEFFL----KEKGEVVIMVKARSIDSTAEPEEVFKSVLK 180 (209)
T ss_dssp EEECCCST------------------------THHHHHHHHHHHHE----EEEEEEEEEEEHHHHCTTSCHHHHHHHHHH
T ss_pred EEecccCh------------------------hhHHHHHHHHHHHh----ccCCeEEEEEEccccCCCCCHHHHHHHHHH
Confidence 88876632 11234677787776 9999997764 55666777777776655
Q ss_pred h--CCcEEee
Q 010971 330 K--RDVKLVP 337 (496)
Q Consensus 330 ~--~~~~lv~ 337 (496)
. .++++++
T Consensus 181 ~l~~gf~i~E 190 (209)
T d1nt2a_ 181 EMEGDFKIVK 190 (209)
T ss_dssp HHHTTSEEEE
T ss_pred HHHcCCEEEE
Confidence 3 3666655
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.50 E-value=3e-14 Score=134.49 Aligned_cols=86 Identities=16% Similarity=0.252 Sum_probs=77.0
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
..+|++++|++|||+|||+|..|..||.+++..|.|+++|+++.+++.++++++..++.|+.+.++|+...... .+.|
T Consensus 68 l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~--~~~f 145 (213)
T d1dl5a1 68 MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE--FSPY 145 (213)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG--GCCE
T ss_pred HHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccc--ccch
Confidence 46688999999999999999999999999988899999999999999999999999999999999998765432 3689
Q ss_pred CEEEECCC
Q 010971 251 DRVLLDAP 258 (496)
Q Consensus 251 D~VLlDaP 258 (496)
|+|++++.
T Consensus 146 D~I~~~~~ 153 (213)
T d1dl5a1 146 DVIFVTVG 153 (213)
T ss_dssp EEEEECSB
T ss_pred hhhhhhcc
Confidence 99998754
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.49 E-value=7.4e-14 Score=135.95 Aligned_cols=125 Identities=26% Similarity=0.313 Sum_probs=100.7
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
..+|++|||||||+|+.|+++|.. +.+.|+|+|+|+..++.+++|++.+|+.+ +.++++|++.++. .+.||+|+
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~--~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~---~~~~D~Ii 179 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---ENIADRIL 179 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---CSCEEEEE
T ss_pred cCCccEEEECcceEcHHHHHHHHh--CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc---CCCCCEEE
Confidence 468999999999999999999875 34699999999999999999999999987 8999999998864 36899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE-eC--CCCCcCCHHHHHHHHHhC
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS-TC--SIMVTENEAVIDYALKKR 331 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS-TC--Si~~eENE~vV~~~L~~~ 331 (496)
+|+|+++. ..|..|+.++ ++||.|.|. .| ....++..+.+..+....
T Consensus 180 ~~~p~~~~--------------------------~~l~~a~~~l----~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~ 229 (260)
T d2frna1 180 MGYVVRTH--------------------------EFIPKALSIA----KDGAIIHYHNTVPEKLMPREPFETFKRITKEY 229 (260)
T ss_dssp ECCCSSGG--------------------------GGHHHHHHHE----EEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHT
T ss_pred ECCCCchH--------------------------HHHHHHHhhc----CCCCEEEEEeccccccchhhHHHHHHHHHHHc
Confidence 99997542 2467788887 999998653 22 334455667777777766
Q ss_pred CcEE
Q 010971 332 DVKL 335 (496)
Q Consensus 332 ~~~l 335 (496)
++.+
T Consensus 230 g~~v 233 (260)
T d2frna1 230 GYDV 233 (260)
T ss_dssp TCEE
T ss_pred CCce
Confidence 6544
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.49 E-value=2.5e-14 Score=139.71 Aligned_cols=132 Identities=17% Similarity=0.157 Sum_probs=103.8
Q ss_pred cchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEecCCCCCc
Q 010971 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG---VTNTIVCNYDGNELP 242 (496)
Q Consensus 166 sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g---~~nv~v~~~D~~~~~ 242 (496)
.+.+.+..|+++||++|||+|||+|..|++||..+++.|.|+++|+++++++.+++|+++++ ..|+.+.+.|+...+
T Consensus 84 D~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~ 163 (264)
T d1i9ga_ 84 DAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 163 (264)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc
Confidence 34566788999999999999999999999999999999999999999999999999999863 468999999987653
Q ss_pred cccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHH
Q 010971 243 KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322 (496)
Q Consensus 243 ~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~ 322 (496)
+..+.||.|++|.|+ | | ..|.++.+.| ||||+||..+.++ ++-+.
T Consensus 164 --~~~~~fDaV~ldlp~---------P---~---------------~~l~~~~~~L----kpGG~lv~~~P~i--~Qv~~ 208 (264)
T d1i9ga_ 164 --LPDGSVDRAVLDMLA---------P---W---------------EVLDAVSRLL----VAGGVLMVYVATV--TQLSR 208 (264)
T ss_dssp --CCTTCEEEEEEESSC---------G---G---------------GGHHHHHHHE----EEEEEEEEEESSH--HHHHH
T ss_pred --ccCCCcceEEEecCC---------H---H---------------HHHHHHHhcc----CCCCEEEEEeCcc--ChHHH
Confidence 334789999999882 2 1 1367777776 9999987655554 34444
Q ss_pred HHHHHHHhCC
Q 010971 323 VIDYALKKRD 332 (496)
Q Consensus 323 vV~~~L~~~~ 332 (496)
.++.+-...+
T Consensus 209 ~~~~l~~~~~ 218 (264)
T d1i9ga_ 209 IVEALRAKQC 218 (264)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHcCC
Confidence 4544433443
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.7e-14 Score=143.32 Aligned_cols=117 Identities=15% Similarity=0.155 Sum_probs=92.3
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC-----------CCeEEEEe
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-----------VTNTIVCN 235 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g-----------~~nv~v~~ 235 (496)
+.+.+..|+++||++|||+|||+|+.|++||..+++.|.|+++|+++.+++.+++|+++++ ..|+.+.+
T Consensus 87 ~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~ 166 (324)
T d2b25a1 87 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 166 (324)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence 3456778999999999999999999999999999999999999999999999999999864 25789999
Q ss_pred cCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEE-EEeCC
Q 010971 236 YDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV-YSTCS 314 (496)
Q Consensus 236 ~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LV-YSTCS 314 (496)
.|.......+....||.|++|.|- | | ..|.++.++| ||||+|| |+.|.
T Consensus 167 ~di~~~~~~~~~~~fD~V~LD~p~---------P---~---------------~~l~~~~~~L----KpGG~lv~~~P~i 215 (324)
T d2b25a1 167 KDISGATEDIKSLTFDAVALDMLN---------P---H---------------VTLPVFYPHL----KHGGVCAVYVVNI 215 (324)
T ss_dssp SCTTCCC-------EEEEEECSSS---------T---T---------------TTHHHHGGGE----EEEEEEEEEESSH
T ss_pred cchhhcccccCCCCcceEeecCcC---------H---H---------------HHHHHHHHhc----cCCCEEEEEeCCH
Confidence 998766544445689999999881 2 1 1366777775 9999987 55554
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.42 E-value=3.9e-13 Score=127.02 Aligned_cols=116 Identities=12% Similarity=0.126 Sum_probs=93.7
Q ss_pred hhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCC
Q 010971 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 168 ~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~ 247 (496)
.+.+..++++||++|||+|||+|..|.+|+... +.|+|+|+|+..++.+++++...|+.++.+.++|+..++ +++
T Consensus 6 ~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~--~~~ 80 (234)
T d1xxla_ 6 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP--FPD 80 (234)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC--SCT
T ss_pred HHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhccccccccccccccccccc--ccc
Confidence 356778899999999999999999999998763 589999999999999999999999999999999998876 455
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
++||.|++ .+++..-|+ ...+|.++.+.| +|||++++++-+
T Consensus 81 ~~fD~v~~------~~~l~~~~d----------------~~~~l~~~~r~L----kpgG~~~~~~~~ 121 (234)
T d1xxla_ 81 DSFDIITC------RYAAHHFSD----------------VRKAVREVARVL----KQDGRFLLVDHY 121 (234)
T ss_dssp TCEEEEEE------ESCGGGCSC----------------HHHHHHHHHHHE----EEEEEEEEEEEC
T ss_pred cccceeee------eceeecccC----------------HHHHHHHHHHee----CCCcEEEEEEcC
Confidence 89999997 222221111 124577777876 999999987543
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.41 E-value=1.2e-13 Score=128.83 Aligned_cols=140 Identities=18% Similarity=0.266 Sum_probs=107.5
Q ss_pred HHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---cC
Q 010971 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LG 246 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~~ 246 (496)
++.+|.|++|+.|||+|||+||.|.+|++.+++ +.|+|+|.++.+++.++.+++.++- ++.+++.++..+... +.
T Consensus 15 vi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~-~~vi~~D~d~~~l~~a~~~l~~~~~-r~~~~~~~f~~~~~~~~~~~ 92 (192)
T d1m6ya2 15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFSD-RVSLFKVSYREADFLLKTLG 92 (192)
T ss_dssp HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTGGGTT-TEEEEECCGGGHHHHHHHTT
T ss_pred HHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCC-CeEEEeechHHHHHHHHHhhccccc-cccchhHHHhhHHHHHHHcC
Confidence 356788999999999999999999999999864 8999999999999999999998863 588888887665322 23
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~ 326 (496)
.+.||.||+|-.||.. .+ ++.......+.+.|..+.++| +|||+++..|+ +..|+ ..|..
T Consensus 93 ~~~vdgIl~DlGvSs~-------Ql------d~~~r~~~~~~~~L~~a~~~L----k~gG~l~ii~f--~s~Ed-r~vk~ 152 (192)
T d1m6ya2 93 IEKVDGILMDLGVSTY-------QL------KGENRELENLKEFLKKAEDLL----NPGGRIVVISF--HSLED-RIVKE 152 (192)
T ss_dssp CSCEEEEEEECSCCHH-------HH------HTSHTHHHHHHHHHHHGGGGE----EEEEEEEEEES--SHHHH-HHHHH
T ss_pred CCCcceeeeccchhHh-------hh------hhhhccchhHHHHHHHHHHhc----CCCCeeeeecc--ccHHH-HHHHH
Confidence 4789999999998742 11 111222344567788888876 99999998664 44554 57777
Q ss_pred HHHhC
Q 010971 327 ALKKR 331 (496)
Q Consensus 327 ~L~~~ 331 (496)
++++.
T Consensus 153 ~f~~~ 157 (192)
T d1m6ya2 153 TFRNS 157 (192)
T ss_dssp HHHHC
T ss_pred HHhhc
Confidence 77765
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.38 E-value=6.8e-13 Score=122.56 Aligned_cols=133 Identities=12% Similarity=0.139 Sum_probs=100.8
Q ss_pred CCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe--EEEEecCCCCC
Q 010971 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN--TIVCNYDGNEL 241 (496)
Q Consensus 164 d~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n--v~v~~~D~~~~ 241 (496)
|.++.+.+..|.+.++.+|||+|||+|..+++++... ..|+++|+|+..+..+++|++.+++.+ +.+...|....
T Consensus 38 d~~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~ 114 (194)
T d1dusa_ 38 DKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN 114 (194)
T ss_dssp CHHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT
T ss_pred CHHHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhc---cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh
Confidence 4556777788889999999999999999999887643 479999999999999999999999865 78888998653
Q ss_pred ccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCH
Q 010971 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (496)
Q Consensus 242 ~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE 321 (496)
. ..+.||+|++|+|... .. ....+++..+.++| +|||.|+...... .+.
T Consensus 115 ~---~~~~fD~Ii~~~p~~~--------------~~-------~~~~~~l~~~~~~L----kpgG~l~i~~~~~---~~~ 163 (194)
T d1dusa_ 115 V---KDRKYNKIITNPPIRA--------------GK-------EVLHRIIEEGKELL----KDNGEIWVVIQTK---QGA 163 (194)
T ss_dssp C---TTSCEEEEEECCCSTT--------------CH-------HHHHHHHHHHHHHE----EEEEEEEEEEEST---HHH
T ss_pred h---ccCCceEEEEcccEEe--------------cc-------hhhhhHHHHHHHhc----CcCcEEEEEEeCc---CCH
Confidence 2 3478999999999521 11 12245788888876 9999887654332 233
Q ss_pred HHHHHHHHh
Q 010971 322 AVIDYALKK 330 (496)
Q Consensus 322 ~vV~~~L~~ 330 (496)
..+...+.+
T Consensus 164 ~~~~~~l~~ 172 (194)
T d1dusa_ 164 KSLAKYMKD 172 (194)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445555544
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=7.5e-12 Score=125.70 Aligned_cols=149 Identities=20% Similarity=0.259 Sum_probs=107.5
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc--cCCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--LGLN 248 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~--~~~~ 248 (496)
..++++.++++|||++||.|.+|+.||.. ...|+|+|.++..++.++.|++.+|+.|+.++..|....... ....
T Consensus 205 ~~~~~~~~~~~vlDLycG~G~fsl~La~~---~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~ 281 (358)
T d1uwva2 205 LEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN 281 (358)
T ss_dssp HHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTT
T ss_pred HHhhccCCCceEEEecccccccchhcccc---ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhc
Confidence 34457889999999999999999999874 368999999999999999999999999999999887654211 1236
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH--
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY-- 326 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~-- 326 (496)
.||+|++|||-+|.+ +.+...+++ +| -+|||.+|.... ....
T Consensus 282 ~~d~vilDPPR~G~~-------------------------~~~~~l~~~-----~~-~~ivYVSCnp~T-----laRDl~ 325 (358)
T d1uwva2 282 GFDKVLLDPARAGAA-------------------------GVMQQIIKL-----EP-IRIVYVSCNPAT-----LARDSE 325 (358)
T ss_dssp CCSEEEECCCTTCCH-------------------------HHHHHHHHH-----CC-SEEEEEESCHHH-----HHHHHH
T ss_pred cCceEEeCCCCccHH-------------------------HHHHHHHHc-----CC-CEEEEEeCCHHH-----HHHHHH
Confidence 799999999988853 123333333 55 579999997422 2111
Q ss_pred HHHhCCcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEe
Q 010971 327 ALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382 (496)
Q Consensus 327 ~L~~~~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K 382 (496)
.|.+.++++..+. .+-+|||++..+- ||.|+|
T Consensus 326 ~l~~~gy~l~~i~----------------------~~D~FP~T~HvE~--v~~l~R 357 (358)
T d1uwva2 326 ALLKAGYTIARLA----------------------MLDMFPHTGHLES--MVLFSR 357 (358)
T ss_dssp HHHHTTCEEEEEE----------------------EECCSTTSSCCEE--EEEEEC
T ss_pred HHHHCCCeEeEEE----------------------EEecCCCCccEEE--EEEEEe
Confidence 1223455554431 2457899888776 477766
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=3e-12 Score=125.38 Aligned_cols=142 Identities=11% Similarity=0.097 Sum_probs=106.4
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
..+.+|||+|||+|..++.|+...++ ..|+|+|+|+..++.+++|++++|+.||.++..|.... +...+||+|+++
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~-~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~---~~~~~fDlIvsN 182 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPD-CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA---LAGQQFAMIVSN 182 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTT-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG---GTTCCEEEEEEC
T ss_pred ccccceeeeehhhhHHHHHHHhhCCc-ceeeeccchhHHHhHHHHHHHHhCcccceeeecccccc---cCCCceeEEEec
Confidence 45678999999999999999998765 79999999999999999999999999999999997543 233689999999
Q ss_pred CCCCCCCc-------ccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 010971 257 APCSGTGV-------ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 257 aPCSg~G~-------i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~ 329 (496)
||+-.... ++..|...+.-.. .-....++++..|.++| +|||.|+.- + ...+...|..++.
T Consensus 183 PPYi~~~~~~~~~~v~~~eP~~AL~~g~----dGl~~~~~i~~~a~~~L----~~~G~l~lE---i-g~~q~~~v~~~l~ 250 (274)
T d2b3ta1 183 PPYIDEQDPHLQQGDVRFEPLTALVAAD----SGMADIVHIIEQSRNAL----VSGGFLLLE---H-GWQQGEAVRQAFI 250 (274)
T ss_dssp CCCBCTTCHHHHSSGGGSSCSTTTBCHH----HHTHHHHHHHHHHGGGE----EEEEEEEEE---C-CSSCHHHHHHHHH
T ss_pred chhhhhhhhcccccccccchhhhccccc----ccchHHHHHHHHHHHhc----CCCCEEEEE---E-CchHHHHHHHHHH
Confidence 99966543 3344444332211 12234467888888876 999999872 2 2344566667776
Q ss_pred hCCcE
Q 010971 330 KRDVK 334 (496)
Q Consensus 330 ~~~~~ 334 (496)
+.++.
T Consensus 251 ~~gf~ 255 (274)
T d2b3ta1 251 LAGYH 255 (274)
T ss_dssp HTTCT
T ss_pred HCCCC
Confidence 66554
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.33 E-value=3.3e-12 Score=119.29 Aligned_cols=113 Identities=18% Similarity=0.190 Sum_probs=88.8
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
...+.++++++|||+|||+|..|.+++... +.|+|+|+|+..++.+++++...|..++.+.+.|+..+| ++.+.|
T Consensus 8 l~~~~l~~~~rVLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~--~~~~~f 82 (231)
T d1vl5a_ 8 MQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP--FTDERF 82 (231)
T ss_dssp HHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC--SCTTCE
T ss_pred HHhcCCCCcCEEEEecccCcHHHHHHHHhC---CEEEEEECCHHHHhhhhhccccccccccccccccccccc--cccccc
Confidence 345678999999999999999999888652 589999999999999999999999999999999999887 345899
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
|+|++- .++..-+ . ...+|.++.++| +|||+|+.++-+
T Consensus 83 D~v~~~------~~l~~~~------d----------~~~~l~~~~r~L----kpgG~l~i~~~~ 120 (231)
T d1vl5a_ 83 HIVTCR------IAAHHFP------N----------PASFVSEAYRVL----KKGGQLLLVDNS 120 (231)
T ss_dssp EEEEEE------SCGGGCS------C----------HHHHHHHHHHHE----EEEEEEEEEEEE
T ss_pred cccccc------ccccccC------C----------HHHHHHHHHHhc----CCCcEEEEEeCC
Confidence 999862 1211111 1 123577777776 999999987644
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.27 E-value=1.1e-11 Score=120.24 Aligned_cols=114 Identities=14% Similarity=0.101 Sum_probs=90.1
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCE
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
..+.+|.+|||+|||+|+.+.+|++..+ ..|+|+|+++..++.+++++...|+. ++.+.++|+..+| ++.++||+
T Consensus 63 ~~l~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~--~~~~sfD~ 138 (282)
T d2o57a1 63 GVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP--CEDNSYDF 138 (282)
T ss_dssp TCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS--SCTTCEEE
T ss_pred cCCCCCCEEEEeCCCCcHHHhhhhccCC--cEEEEEeccchhhhhhhccccccccccccccccccccccc--ccccccch
Confidence 3577899999999999999999998763 58999999999999999999999996 5999999999887 34589999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
|++- +++..-|+ + ..+|..+.++| +|||+|++++.....
T Consensus 139 V~~~------~~l~h~~d------~----------~~~l~~~~~~L----kpgG~l~~~~~~~~~ 177 (282)
T d2o57a1 139 IWSQ------DAFLHSPD------K----------LKVFQECARVL----KPRGVMAITDPMKED 177 (282)
T ss_dssp EEEE------SCGGGCSC------H----------HHHHHHHHHHE----EEEEEEEEEEEEECT
T ss_pred hhcc------chhhhccC------H----------HHHHHHHHHhc----CCCcEEEEEEeecCC
Confidence 9861 22211111 1 23577777776 999999998765443
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.26 E-value=5.4e-12 Score=112.53 Aligned_cols=79 Identities=19% Similarity=0.235 Sum_probs=68.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEEEC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.|.+|||+|||+|+.++.++. ++...|+++|.++..++.+++|++.+|+.+ +.+++.|+..+.... ...||+|++|
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~--rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~-~~~fDiIf~D 90 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVS--RGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL-TGRFDLVFLD 90 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHH--TTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB-CSCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHH--hCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccccc-ccccceeEec
Confidence 689999999999999886554 355699999999999999999999999976 999999987764332 4789999999
Q ss_pred CCC
Q 010971 257 APC 259 (496)
Q Consensus 257 aPC 259 (496)
||.
T Consensus 91 PPy 93 (152)
T d2esra1 91 PPY 93 (152)
T ss_dssp CSS
T ss_pred hhh
Confidence 994
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.26 E-value=1.6e-11 Score=115.08 Aligned_cols=127 Identities=19% Similarity=0.227 Sum_probs=97.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
++..|||+|||+|..+.++|...++ ..++|+|+++.++..+..++++.|++|+.++.+|+..+...++.+.||.|++--
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~-~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~f 107 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPD-INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 107 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCceEEEEEecCcHHHHHHHHhCCC-CcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccc
Confidence 4668999999999999999998654 789999999999999999999999999999999998876666778999998865
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 010971 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~ 329 (496)
|.-- .+.+..+.++ ++..+|..+.+.| ||||.|+..| -++...++++.
T Consensus 108 p~P~----~k~~h~k~Rl----------~~~~~l~~~~r~L----kpgG~l~i~T------D~~~y~~~~~~ 155 (204)
T d2fcaa1 108 SDPW----PKKRHEKRRL----------TYSHFLKKYEEVM----GKGGSIHFKT------DNRGLFEYSLK 155 (204)
T ss_dssp CCCC----CSGGGGGGST----------TSHHHHHHHHHHH----TTSCEEEEEE------SCHHHHHHHHH
T ss_pred cccc----chhhhcchhh----------hHHHHHHHHHHhC----CCCcEEEEEE------CChHHHHHHHH
Confidence 5211 1111111111 2345677777776 9999999877 45555555543
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=8.8e-12 Score=118.34 Aligned_cols=82 Identities=15% Similarity=0.122 Sum_probs=72.0
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEecCCCCCccccCCCC
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-----TNTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-----~nv~v~~~D~~~~~~~~~~~~ 249 (496)
.++||++|||+|||+|..|..||.+++..|.|+++|+++..++.+++|+++.++ .++.+..+|+...... ...
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~--~~~ 150 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE--EAP 150 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG--GCC
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccch--hhh
Confidence 678999999999999999999999998889999999999999999999998765 4688889998765433 378
Q ss_pred cCEEEECCC
Q 010971 250 VDRVLLDAP 258 (496)
Q Consensus 250 fD~VLlDaP 258 (496)
||+|++++.
T Consensus 151 fD~I~~~~~ 159 (224)
T d1i1na_ 151 YDAIHVGAA 159 (224)
T ss_dssp EEEEEECSB
T ss_pred hhhhhhhcc
Confidence 999999754
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=2e-11 Score=115.84 Aligned_cols=115 Identities=12% Similarity=0.014 Sum_probs=89.1
Q ss_pred hhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccC
Q 010971 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLG 246 (496)
Q Consensus 168 ~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~ 246 (496)
..++..+.+.||.+|||+|||+|+.+..+++..+ +.|+++|+|+..++.++++....|+.+ +.+...|+..+. .
T Consensus 23 ~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~--~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~---~ 97 (245)
T d1nkva_ 23 ATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV---A 97 (245)
T ss_dssp HHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC---C
T ss_pred HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcC--CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc---c
Confidence 4456778899999999999999999999988653 689999999999999999999999975 999999998863 2
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
.++||.|++- +++..-++ ...+|..+.+.| ||||+|+++.-
T Consensus 98 ~~~fD~v~~~------~~~~~~~d----------------~~~~l~~~~r~L----kPGG~l~i~~~ 138 (245)
T d1nkva_ 98 NEKCDVAACV------GATWIAGG----------------FAGAEELLAQSL----KPGGIMLIGEP 138 (245)
T ss_dssp SSCEEEEEEE------SCGGGTSS----------------SHHHHHHHTTSE----EEEEEEEEEEE
T ss_pred cCceeEEEEE------ehhhccCC----------------HHHHHHHHHHHc----CcCcEEEEEec
Confidence 4789999861 12211111 023466666665 99999998753
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.22 E-value=4.4e-11 Score=111.54 Aligned_cols=81 Identities=21% Similarity=0.186 Sum_probs=66.8
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcC
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD 251 (496)
...+-..|.+|||+|||+|+.++.++. .+...|+|+|+|+..++.+++|++.+++. +.++..|...++ ..||
T Consensus 40 ~~~~dl~g~~vLDlg~GtG~l~i~a~~--~g~~~v~~vdi~~~~~~~a~~N~~~~~~~-~~~~~~d~~~~~-----~~fD 111 (201)
T d1wy7a1 40 YSLGDIEGKVVADLGAGTGVLSYGALL--LGAKEVICVEVDKEAVDVLIENLGEFKGK-FKVFIGDVSEFN-----SRVD 111 (201)
T ss_dssp HHTTSSTTCEEEEETCTTCHHHHHHHH--TTCSEEEEEESCHHHHHHHHHHTGGGTTS-EEEEESCGGGCC-----CCCS
T ss_pred HhcCCCCCCEEEECcCcchHHHHHHHH--cCCCEEEEEcCcHHHHHHHHHHHHHcCCC-ceEEECchhhhC-----CcCc
Confidence 334445789999999999999987654 34468999999999999999999999985 567788876653 6799
Q ss_pred EEEECCCCC
Q 010971 252 RVLLDAPCS 260 (496)
Q Consensus 252 ~VLlDaPCS 260 (496)
+|++||||.
T Consensus 112 ~Vi~nPP~~ 120 (201)
T d1wy7a1 112 IVIMNPPFG 120 (201)
T ss_dssp EEEECCCCS
T ss_pred EEEEcCccc
Confidence 999999984
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.21 E-value=2.8e-11 Score=115.31 Aligned_cols=132 Identities=19% Similarity=0.218 Sum_probs=89.9
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE--
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR-- 252 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~-- 252 (496)
.++||++|||+|||+|..+.+||...+ .|.|+|+|+|+.+++.+..++.+. .|+.++..|+...... ....||.
T Consensus 71 ~ikpG~~VLDlGcGsG~~~~~la~~~~-~g~V~aVDiS~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~~-~~~~~~v~~ 146 (230)
T d1g8sa_ 71 PIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEY-ANIVEKVDV 146 (230)
T ss_dssp CCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGG-TTTCCCEEE
T ss_pred CCCCCCEEEEeCEEcCHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhhh--cccceEEEeeccCccc-ccccceeEE
Confidence 478999999999999999999999764 589999999999999999887664 4677788888776543 2344554
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC--CCC-cCCHHH---HHH
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS--IMV-TENEAV---IDY 326 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS--i~~-eENE~v---V~~ 326 (496)
|+.|..+- .....++.++..+| ||||+++.+.-. ... ..-+.+ +..
T Consensus 147 i~~~~~~~------------------------~~~~~~l~~~~r~L----KpgG~~~i~~k~~~~d~~~~~~~~~~e~~~ 198 (230)
T d1g8sa_ 147 IYEDVAQP------------------------NQAEILIKNAKWFL----KKGGYGMIAIKARSIDVTKDPKEIFKEQKE 198 (230)
T ss_dssp EEECCCST------------------------THHHHHHHHHHHHE----EEEEEEEEEEEGGGTCSSSCHHHHHHHHHH
T ss_pred eeccccch------------------------HHHHHHHHHHHHhc----ccCceEEEEeeccccCCCCCHHHHHHHHHH
Confidence 44443310 11233567777776 999998876322 111 122222 334
Q ss_pred HHHhCCcEEeec
Q 010971 327 ALKKRDVKLVPC 338 (496)
Q Consensus 327 ~L~~~~~~lv~~ 338 (496)
.|+..+|+++..
T Consensus 199 ~L~~aGF~ive~ 210 (230)
T d1g8sa_ 199 ILEAGGFKIVDE 210 (230)
T ss_dssp HHHHHTEEEEEE
T ss_pred HHHHcCCEEEEE
Confidence 455567777654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.20 E-value=1.8e-11 Score=118.53 Aligned_cols=134 Identities=17% Similarity=0.199 Sum_probs=96.1
Q ss_pred cchhHHHhcC--CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc
Q 010971 166 SSFLPVMALA--PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243 (496)
Q Consensus 166 sS~l~v~~L~--~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~ 243 (496)
...++..+|. .++|.+|||+|||+|..++.++.+ + ..|+|+|+|+..++.+++|++++|+.+ .+...|....
T Consensus 106 TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~-g--~~V~gvDis~~av~~A~~na~~n~~~~-~~~~~d~~~~-- 179 (254)
T d2nxca1 106 TTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKRNGVRP-RFLEGSLEAA-- 179 (254)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHHTTCCC-EEEESCHHHH--
T ss_pred hhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc-C--CEEEEEECChHHHHHHHHHHHHcCCce-eEEecccccc--
Confidence 3445555553 678999999999999998876653 2 589999999999999999999999964 5667775432
Q ss_pred ccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHH
Q 010971 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323 (496)
Q Consensus 244 ~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~v 323 (496)
...+.||+|+++.. .. ....++....+.| +|||+|+.|.- ..+....
T Consensus 180 -~~~~~fD~V~ani~------------------~~-------~l~~l~~~~~~~L----kpGG~lilSgi---l~~~~~~ 226 (254)
T d2nxca1 180 -LPFGPFDLLVANLY------------------AE-------LHAALAPRYREAL----VPGGRALLTGI---LKDRAPL 226 (254)
T ss_dssp -GGGCCEEEEEEECC------------------HH-------HHHHHHHHHHHHE----EEEEEEEEEEE---EGGGHHH
T ss_pred -ccccccchhhhccc------------------cc-------cHHHHHHHHHHhc----CCCcEEEEEec---chhhHHH
Confidence 23378999997521 11 1234555555655 99999998742 2345666
Q ss_pred HHHHHHhCCcEEeec
Q 010971 324 IDYALKKRDVKLVPC 338 (496)
Q Consensus 324 V~~~L~~~~~~lv~~ 338 (496)
|...++.++++++..
T Consensus 227 v~~~~~~~Gf~~~~~ 241 (254)
T d2nxca1 227 VREAMAGAGFRPLEE 241 (254)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHCCCEEEEE
Confidence 777777888877654
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.18 E-value=2.4e-11 Score=114.82 Aligned_cols=98 Identities=18% Similarity=0.179 Sum_probs=80.6
Q ss_pred cccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec
Q 010971 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236 (496)
Q Consensus 157 ~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~ 236 (496)
.|.++.+---......+|++++|++|||+|||+|..|..||.+.+ +.|+++|.++..+..+++|++++|+.|+.+.++
T Consensus 57 ~g~~is~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g--~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~g 134 (215)
T d1jg1a_ 57 AGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILG 134 (215)
T ss_dssp TTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred hhhhhhhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhC--ceeEEEeccHHHHHHHHHHHHHcCCceeEEEEC
Confidence 356665532223346778999999999999999999999998874 679999999999999999999999999999999
Q ss_pred CCCCCccccCCCCcCEEEECCC
Q 010971 237 DGNELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 237 D~~~~~~~~~~~~fD~VLlDaP 258 (496)
|+...... ...||+|++.+.
T Consensus 135 d~~~g~~~--~~pfD~Iiv~~a 154 (215)
T d1jg1a_ 135 DGSKGFPP--KAPYDVIIVTAG 154 (215)
T ss_dssp CGGGCCGG--GCCEEEEEECSB
T ss_pred ccccCCcc--cCcceeEEeecc
Confidence 98764322 378999999644
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=1.9e-11 Score=112.38 Aligned_cols=80 Identities=18% Similarity=0.117 Sum_probs=68.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
+|.+|||+|||+|..++..+.. +...|+++|.++..++.+++|++.+++.++.+++.|+..+... ....||+|++||
T Consensus 43 ~~~~vLDlfaGsG~~giealsr--Ga~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~-~~~~fDlIf~DP 119 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ-KGTPHNIVFVDP 119 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS-CCCCEEEEEECC
T ss_pred chhhhhhhhccccceeeeEEec--CcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccc-cccccCEEEEcC
Confidence 5789999999999999876554 5568999999999999999999999999999999998765432 246899999999
Q ss_pred CCC
Q 010971 258 PCS 260 (496)
Q Consensus 258 PCS 260 (496)
|+.
T Consensus 120 PY~ 122 (183)
T d2fpoa1 120 PFR 122 (183)
T ss_dssp SSS
T ss_pred ccc
Confidence 964
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.18 E-value=6.9e-11 Score=110.62 Aligned_cols=127 Identities=17% Similarity=0.237 Sum_probs=97.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
.+..|||+|||.|..+.++|...++ ..++|+|++..++..+..++.+.|++|+.++.+|+..+...++...+|.|++--
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~-~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 109 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCC-CceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc
Confidence 4568999999999999999999765 689999999999999999999999999999999999887667778999998865
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 010971 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~ 329 (496)
| +|..+....... -.|..+|....+.| +|||.|..+| .++....+++.
T Consensus 110 P---------dPw~K~~h~krR-----l~~~~~l~~~~~~L----kpgG~l~i~T------D~~~Y~~~~le 157 (204)
T d1yzha1 110 S---------DPWPKKRHEKRR-----LTYKTFLDTFKRIL----PENGEIHFKT------DNRGLFEYSLV 157 (204)
T ss_dssp C---------CCCCSGGGGGGS-----TTSHHHHHHHHHHS----CTTCEEEEEE------SCHHHHHHHHH
T ss_pred c---------ccccchhhhhhh-----hhHHHHHHHHHHhC----CCCcEEEEEE------CCccHHHHHHH
Confidence 5 333222111111 13455677767765 9999998877 45666666554
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.14 E-value=1.9e-11 Score=111.25 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=61.4
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC--ccccCCCCcCEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL--PKVLGLNTVDRV 253 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~--~~~~~~~~fD~V 253 (496)
...|.+|||+|||+|+.++.++.. + ..++++|.|+..++.+++|++.+|+.+ .+...|+..+ ........||+|
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~--g-a~vv~vD~~~~a~~~~~~N~~~~~~~~-~v~~~~~d~~~~~~~~~~~~fD~I 114 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE--G-WEAVLVEKDPEAVRLLKENVRRTGLGA-RVVALPVEVFLPEAKAQGERFTVA 114 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT--T-CEEEEECCCHHHHHHHHHHHHHHTCCC-EEECSCHHHHHHHHHHTTCCEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhc--c-chhhhcccCHHHHhhhhHHHHhhcccc-ceeeeehhcccccccccCCcccee
Confidence 457899999999999998765553 3 578899999999999999999999975 3344444322 111234689999
Q ss_pred EECCCC
Q 010971 254 LLDAPC 259 (496)
Q Consensus 254 LlDaPC 259 (496)
++|||+
T Consensus 115 f~DPPY 120 (171)
T d1ws6a1 115 FMAPPY 120 (171)
T ss_dssp EECCCT
T ss_pred EEcccc
Confidence 999996
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.14 E-value=1.5e-10 Score=106.65 Aligned_cols=108 Identities=14% Similarity=0.145 Sum_probs=81.9
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
+.++.+|||+|||+|..|.++++. ...|+|+|+|+..++.+++++...+. ++.++..|+..++ +..+.||+|++
T Consensus 35 l~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~-~~~~~~~d~~~l~--~~~~~fD~I~~ 108 (226)
T d1ve3a1 35 MKKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRES-NVEFIVGDARKLS--FEDKTFDYVIF 108 (226)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEECCTTSCC--SCTTCEEEEEE
T ss_pred cCCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhccccc-ccccccccccccc--ccCcCceEEEE
Confidence 357889999999999999999874 35899999999999999999998885 4566778998886 34489999987
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
- +++. ..+..+ ..++|..+.++| +|||+++.++-
T Consensus 109 ~------~~l~-------~~~~~d-------~~~~l~~i~~~L----kpgG~lii~~~ 142 (226)
T d1ve3a1 109 I------DSIV-------HFEPLE-------LNQVFKEVRRVL----KPSGKFIMYFT 142 (226)
T ss_dssp E------SCGG-------GCCHHH-------HHHHHHHHHHHE----EEEEEEEEEEE
T ss_pred e------cchh-------hCChhH-------HHHHHHHHHHHc----CcCcEEEEEEc
Confidence 2 2221 112222 234677787876 99999887643
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.08 E-value=3.6e-10 Score=103.75 Aligned_cols=109 Identities=19% Similarity=0.135 Sum_probs=85.5
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
+.+| +|||+|||+|..+.++++. ...|+|+|+|+..++.++.++...|+.++.+...|+..++. .+.||.|++
T Consensus 29 ~~~g-rvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~fD~I~~ 101 (198)
T d2i6ga1 29 VAPG-RTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF---DGEYDFILS 101 (198)
T ss_dssp SCSC-EEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC---CCCEEEEEE
T ss_pred CCCC-cEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc---cccccEEEE
Confidence 3444 9999999999999999885 25899999999999999999999999999999999887752 378999997
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
... +.. ....+ ...+|..+.++| +|||++++++..-
T Consensus 102 ~~~------~~~-------~~~~~-------~~~~l~~~~~~L----~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 102 TVV------MMF-------LEAQT-------IPGLIANMQRCT----KPGGYNLIVAAMD 137 (198)
T ss_dssp ESC------GGG-------SCTTH-------HHHHHHHHHHTE----EEEEEEEEEEEBC
T ss_pred eee------eec-------CCHHH-------HHHHHHHHHHHc----CCCcEEEEEEecC
Confidence 432 111 11111 134678888876 9999999987764
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.06 E-value=1.5e-10 Score=109.93 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=68.5
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
..+|++++|++|||+|||+|..|..||.+. +.|+++|+++..+..+++++.. ..|+.+.++|+...... .+.|
T Consensus 63 l~~L~l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~--~~nv~~~~~d~~~g~~~--~~pf 135 (224)
T d1vbfa_ 63 LDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSY--YNNIKLILGDGTLGYEE--EKPY 135 (224)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTT--CSSEEEEESCGGGCCGG--GCCE
T ss_pred HHHhhhcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhc--ccccccccCchhhcchh--hhhH
Confidence 567899999999999999999999998874 6899999999999999998775 46899999998653322 2679
Q ss_pred CEEEECCC
Q 010971 251 DRVLLDAP 258 (496)
Q Consensus 251 D~VLlDaP 258 (496)
|+|++.+.
T Consensus 136 D~Iiv~~a 143 (224)
T d1vbfa_ 136 DRVVVWAT 143 (224)
T ss_dssp EEEEESSB
T ss_pred HHHHhhcc
Confidence 99999764
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.06 E-value=7.2e-10 Score=109.00 Aligned_cols=125 Identities=12% Similarity=0.061 Sum_probs=92.8
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGL 247 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~ 247 (496)
+.+..|++++|++|||+|||.|+.+.++|+..+ +.|+++++|+..+..+++++...|+.+ +.+...|.... .
T Consensus 52 ~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~-----~ 124 (291)
T d1kpia_ 52 LALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-----D 124 (291)
T ss_dssp HHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-----C
T ss_pred HHHHhcCCCCCCEEEEecCcchHHHHHHHHhcC--cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc-----c
Confidence 445667899999999999999999999998874 689999999999999999999999976 67777775432 3
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
+.||+|++ .|++-+-++..-.. ..+....++..+.++| +|||+++..|.++..
T Consensus 125 ~~fD~i~s------ie~~eH~~~~~~~~-------~~~~~~~~f~~i~~~L----kpgG~~~l~~i~~~~ 177 (291)
T d1kpia_ 125 EPVDRIVS------LGAFEHFADGAGDA-------GFERYDTFFKKFYNLT----PDDGRMLLHTITIPD 177 (291)
T ss_dssp CCCSEEEE------ESCGGGTTCCSSCC-------STTHHHHHHHHHHHTS----CTTCEEEEEEEECCC
T ss_pred cccceEee------chhHHhcchhhhhh-------HHHHHHHHHHHHHHhC----CCCCceEEEEEeccC
Confidence 78999986 34443322210000 0112345677777775 999999998887643
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.05 E-value=3.4e-10 Score=107.93 Aligned_cols=113 Identities=12% Similarity=0.141 Sum_probs=82.1
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
..+|.+|||+|||+|+-+..++.. +.+.|+|+|+|+..++.++++...++.. ++.+...|+...+... .+.||+|+
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~--~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~-~~~fD~V~ 98 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL-GKEFDVIS 98 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC-SSCEEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccc-cccceEEE
Confidence 457899999999999998888775 3368999999999999999999888875 6899999986554322 36899998
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
+- +++.. ...+.++ ...+|..+.+.| +|||+++.++-
T Consensus 99 ~~------~~l~~-----~~~~~~~-------~~~~l~~i~~~L----k~gG~~i~~~~ 135 (252)
T d1ri5a_ 99 SQ------FSFHY-----AFSTSES-------LDIAQRNIARHL----RPGGYFIMTVP 135 (252)
T ss_dssp EE------SCGGG-----GGSSHHH-------HHHHHHHHHHTE----EEEEEEEEEEE
T ss_pred Ec------ceeee-----cCCCHHH-------HHHHHHHHhcee----CCCCEEEEEec
Confidence 61 11110 0112222 244566776765 99999987653
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=3.4e-10 Score=105.75 Aligned_cols=135 Identities=11% Similarity=0.073 Sum_probs=98.0
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
...++.+|||+|||+|..+.++++.. ...|+++|+|+..++.+++++...+..++.+.+.|+..++. ..+.||.|+
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~--~~~~fD~I~ 132 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP--EPDSYDVIW 132 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC--CSSCEEEEE
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhc--CCEEEEeecCHHHhhcccccccccccccccccccccccccc--ccccccccc
Confidence 45678899999999999998775443 35899999999999999999999999999999999988763 347999998
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcC------------CHH
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE------------NEA 322 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eE------------NE~ 322 (496)
+- +++.. ....+ ..++|..+.+.| +|||.|+.++-. .... +..
T Consensus 133 ~~------~~l~h-------~~~~~-------~~~~l~~i~~~L----k~~G~~~i~~~~-~~~~~~~~~~~~~~~~~~~ 187 (222)
T d2ex4a1 133 IQ------WVIGH-------LTDQH-------LAEFLRRCKGSL----RPNGIIVIKDNM-AQEGVILDDVDSSVCRDLD 187 (222)
T ss_dssp EE------SCGGG-------SCHHH-------HHHHHHHHHHHE----EEEEEEEEEEEE-BSSSEEEETTTTEEEEBHH
T ss_pred cc------ccccc-------chhhh-------hhhHHHHHHHhc----CCcceEEEEEcc-cccccccccCCceeeCCHH
Confidence 72 22221 11111 245677777776 999999886421 1111 355
Q ss_pred HHHHHHHhCCcEEeec
Q 010971 323 VIDYALKKRDVKLVPC 338 (496)
Q Consensus 323 vV~~~L~~~~~~lv~~ 338 (496)
.+..+++..+++++..
T Consensus 188 ~~~~l~~~aGf~ii~~ 203 (222)
T d2ex4a1 188 VVRRIICSAGLSLLAE 203 (222)
T ss_dssp HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHcCCEEEEE
Confidence 6667777777777654
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.04 E-value=8.5e-10 Score=107.77 Aligned_cols=113 Identities=10% Similarity=0.121 Sum_probs=86.1
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGL 247 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~ 247 (496)
.....|+++||++|||+|||.|+.+.+++...+ ..|+++|+|+..++.+++++.+.|+.. +.+...|.+.++
T Consensus 43 ~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g--~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~----- 115 (280)
T d2fk8a1 43 LNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA----- 115 (280)
T ss_dssp HHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-----
T ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhCc--eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc-----
Confidence 334556899999999999999999999888764 589999999999999999999999864 677777766553
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+.||.|++ .+++-.-+. .. ...++....++| ||||+++..|
T Consensus 116 ~~fD~i~s------i~~~eh~~~-------~~-------~~~~f~~i~~~L----kpgG~~~i~~ 156 (280)
T d2fk8a1 116 EPVDRIVS------IEAFEHFGH-------EN-------YDDFFKRCFNIM----PADGRMTVQS 156 (280)
T ss_dssp CCCSEEEE------ESCGGGTCG-------GG-------HHHHHHHHHHHS----CTTCEEEEEE
T ss_pred cchhhhhH------hhHHHHhhh-------hh-------HHHHHHHHHhcc----CCCceEEEEE
Confidence 68999986 233322111 11 134566666765 9999999876
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.04 E-value=1.7e-10 Score=105.93 Aligned_cols=81 Identities=20% Similarity=0.175 Sum_probs=68.0
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCcccc--CCCCcCEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL--GLNTVDRV 253 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~--~~~~fD~V 253 (496)
.+|.+|||+|||+|+.++.++.. +...|+++|.++..++.+++|++.++.. ++.+.+.|+..+-..+ ....||+|
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~sr--Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlI 117 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLV 117 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCEEEEcccccccccceeeec--chhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceE
Confidence 47999999999999999876664 4568999999999999999999999987 5899999987643221 23579999
Q ss_pred EECCCC
Q 010971 254 LLDAPC 259 (496)
Q Consensus 254 LlDaPC 259 (496)
++|||+
T Consensus 118 flDPPY 123 (182)
T d2fhpa1 118 LLDPPY 123 (182)
T ss_dssp EECCCG
T ss_pred Eechhh
Confidence 999995
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.03 E-value=5.5e-10 Score=104.36 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=86.2
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
.+++.+|||+|||+|..|..|+..+. +...|+|+|+|+.+++.+++++...+.. ++.+.+.|...++. ..||.|
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~----~~~d~i 112 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----KNASMV 112 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC----CSEEEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc----ccceee
Confidence 46789999999999999999998764 3459999999999999999999988865 47888888877652 578988
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
++ ++.... .+.++. ..+|..+.+.| +|||.++.++.+..
T Consensus 113 ~~---~~~l~~----------~~~~d~-------~~~l~~i~~~L----kpgG~li~~~~~~~ 151 (225)
T d1im8a_ 113 IL---NFTLQF----------LPPEDR-------IALLTKIYEGL----NPNGVLVLSEKFRF 151 (225)
T ss_dssp EE---ESCGGG----------SCGGGH-------HHHHHHHHHHE----EEEEEEEEEEECCC
T ss_pred EE---eeeccc----------cChhhH-------HHHHHHHHHhC----CCCceeeccccccc
Confidence 76 222111 111221 34688888886 99999999876653
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.03 E-value=3.5e-10 Score=106.50 Aligned_cols=111 Identities=20% Similarity=0.165 Sum_probs=84.8
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
...++.+|||+|||+|..+..|++. ...|+|+|+|+.+++.+++++...+. ++.+.++|+.+++. + +.||.|+
T Consensus 38 ~~~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~~--~-~~fD~I~ 110 (251)
T d1wzna1 38 AKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAF--K-NEFDAVT 110 (251)
T ss_dssp CSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCC--C-SCEEEEE
T ss_pred cCCCCCEEEEeCCCCCccchhhccc---ceEEEEEeeccccccccccccccccc-cchheehhhhhccc--c-cccchHh
Confidence 4556779999999999999999885 25799999999999999999999887 58899999988863 2 6899998
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
+ ++. ++. ..+..+ ..+.|.++.+.| +|||+++.+...+
T Consensus 111 ~----~~~-~~~-------~~~~~~-------~~~~L~~~~~~L----kpgG~lii~~~~~ 148 (251)
T d1wzna1 111 M----FFS-TIM-------YFDEED-------LRKLFSKVAEAL----KPGGVFITDFPCW 148 (251)
T ss_dssp E----CSS-GGG-------GSCHHH-------HHHHHHHHHHHE----EEEEEEEEEEEC-
T ss_pred h----hhh-hhh-------cCChHH-------HHHHHHHHHHHc----CCCcEEEEEeccc
Confidence 6 211 110 112222 245678888876 9999999987664
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=9.7e-11 Score=110.63 Aligned_cols=113 Identities=13% Similarity=0.081 Sum_probs=83.6
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.+|.+|||+|||+|..+.+|+... ...|+++|+|+..++.+++++...+. ++.+...|+......+..+.||.|+.|
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~i~fD 128 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTLPDGHFDGILYD 128 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred cCCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhccc-ccccccccccccccccccccccceeec
Confidence 579999999999999999888753 25899999999999999999887764 456667776655444556899999999
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
+..+...... .......+..+.++| ||||+|+|.++
T Consensus 129 ~~~~~~~~~~-----------------~~~~~~~~~~~~r~L----kpGG~~~~~~~ 164 (229)
T d1zx0a1 129 TYPLSEETWH-----------------THQFNFIKNHAFRLL----KPGGVLTYCNL 164 (229)
T ss_dssp CCCCBGGGTT-----------------THHHHHHHHTHHHHE----EEEEEEEECCH
T ss_pred cccccccccc-----------------ccCHHHHHHHHHHHc----CCCcEEEEEec
Confidence 8744332110 112234567777775 99999998543
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=99.03 E-value=2.1e-10 Score=106.18 Aligned_cols=151 Identities=17% Similarity=0.069 Sum_probs=102.7
Q ss_pred hhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCC
Q 010971 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 168 ~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~ 247 (496)
.+.+.++.+.+|++|||.|||+|++...+...+.....++++|+++..+.. .....+.++|...... .
T Consensus 9 ~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~---------~~~~~~~~~~~~~~~~---~ 76 (223)
T d2ih2a1 9 DFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL---------PPWAEGILADFLLWEP---G 76 (223)
T ss_dssp HHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC---------CTTEEEEESCGGGCCC---S
T ss_pred HHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh---------cccceeeeeehhcccc---c
Confidence 455677888899999999999999999998888877889999999864321 2234566777655432 3
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHH-------HHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe-CCCCCcC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQ-------KCSYLQKQLILAAIDMVDANSKSGGYIVYST-CSIMVTE 319 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~-------~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST-CSi~~eE 319 (496)
..||.|+.+||+.........+............ ....++..++.+|++++ ++||++++.+ +|++..+
T Consensus 77 ~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~l----k~~G~~~~I~p~~~l~~~ 152 (223)
T d2ih2a1 77 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLL----KPGGVLVFVVPATWLVLE 152 (223)
T ss_dssp SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHE----EEEEEEEEEEEGGGGTCG
T ss_pred cccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhc----ccCCceEEEEeeeeccCc
Confidence 6899999999997766554433321111111100 11225666789999987 9999998877 6677666
Q ss_pred CHHHHHHHH-HhCCcE
Q 010971 320 NEAVIDYAL-KKRDVK 334 (496)
Q Consensus 320 NE~vV~~~L-~~~~~~ 334 (496)
+...+..+| ++..+.
T Consensus 153 ~~~~lR~~l~~~~~i~ 168 (223)
T d2ih2a1 153 DFALLREFLAREGKTS 168 (223)
T ss_dssp GGHHHHHHHHHHSEEE
T ss_pred chHHHHHHHHhcCCEE
Confidence 666665444 444343
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.00 E-value=2.5e-10 Score=108.20 Aligned_cols=83 Identities=18% Similarity=0.200 Sum_probs=70.0
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCc-----EEEEEeCCHHHHHHHHHHHHHc-----CCCeEEEEecCCCCCccc
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTG-----LIYANEMKASRLKSLTANLHRM-----GVTNTIVCNYDGNELPKV 244 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g-----~V~A~D~s~~rl~~l~~nl~r~-----g~~nv~v~~~D~~~~~~~ 244 (496)
++++|++|||+|||+|..|..|+.+++..| +|+++|.++..++.+++|+... ++.|+.+...|+......
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~ 156 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP 156 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc
Confidence 688999999999999999999999976434 8999999999999999987654 567899999998765332
Q ss_pred cCCCCcCEEEECCCC
Q 010971 245 LGLNTVDRVLLDAPC 259 (496)
Q Consensus 245 ~~~~~fD~VLlDaPC 259 (496)
.+.||+|++++.+
T Consensus 157 --~~~fD~Iiv~~a~ 169 (223)
T d1r18a_ 157 --NAPYNAIHVGAAA 169 (223)
T ss_dssp --GCSEEEEEECSCB
T ss_pred --ccceeeEEEEeec
Confidence 3689999997764
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=98.99 E-value=7.8e-10 Score=107.48 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=90.4
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccC
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~ 246 (496)
+.++-.+..+..+.+|||+|||+|..+..++...+..+.|+++|+|+..++.+++++...+. ++.+...|+..++.
T Consensus 16 ~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~~~--- 91 (281)
T d2gh1a1 16 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIEL--- 91 (281)
T ss_dssp HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCC---
T ss_pred HHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-cccccccccccccc---
Confidence 33444444567788999999999999999999887667999999999999999999999887 78889999988752
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
.+.||+|++.. ++..-+ + ...+|.++.+.| ||||.|+..+.
T Consensus 92 ~~~fD~v~~~~------~l~~~~------d----------~~~~l~~~~~~L----kpgG~lii~~~ 132 (281)
T d2gh1a1 92 NDKYDIAICHA------FLLHMT------T----------PETMLQKMIHSV----KKGGKIICFEP 132 (281)
T ss_dssp SSCEEEEEEES------CGGGCS------S----------HHHHHHHHHHTE----EEEEEEEEEEC
T ss_pred cCCceEEEEeh------hhhcCC------C----------HHHHHHHHHHHc----CcCcEEEEEEC
Confidence 25799999732 221111 1 124678888876 99999987663
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.99 E-value=1.1e-09 Score=101.99 Aligned_cols=118 Identities=15% Similarity=0.196 Sum_probs=80.4
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
+..++--.|.+|||+|||+|..++.++.+ +...|+++|+++..++.+++|+. ++.+++.|...++ +.|
T Consensus 41 ~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~--ga~~V~~vDid~~a~~~ar~N~~-----~~~~~~~D~~~l~-----~~f 108 (197)
T d1ne2a_ 41 IYNDGNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS-----GKY 108 (197)
T ss_dssp HHHHTSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC-----CCE
T ss_pred HHHcCCCCCCEEEEeCCCCcHHHHHHHHc--CCCcccccccCHHHHHHHHHccc-----cccEEEEehhhcC-----Ccc
Confidence 44444457999999999999988654443 34689999999999999998863 5678889987654 689
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHh
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~ 330 (496)
|.|++|||. |+..++.+ +.+|..|+.. +.+||+-+. ......+...+..
T Consensus 109 D~Vi~NPPf---g~~~~~~D-----------------~~fl~~a~~~--------~~~iy~ih~---~~~~~~i~~~~~~ 157 (197)
T d1ne2a_ 109 DTWIMNPPF---GSVVKHSD-----------------RAFIDKAFET--------SMWIYSIGN---AKARDFLRREFSA 157 (197)
T ss_dssp EEEEECCCC----------C-----------------HHHHHHHHHH--------EEEEEEEEE---GGGHHHHHHHHHH
T ss_pred eEEEeCccc---chhhhhch-----------------HHHHHHHHhc--------CCeEEEehh---hhHHHHHHHHhhc
Confidence 999999994 43333222 2345555542 568897554 4556666665554
Q ss_pred C
Q 010971 331 R 331 (496)
Q Consensus 331 ~ 331 (496)
.
T Consensus 158 ~ 158 (197)
T d1ne2a_ 158 R 158 (197)
T ss_dssp H
T ss_pred C
Confidence 4
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.99 E-value=9.7e-10 Score=107.72 Aligned_cols=116 Identities=11% Similarity=0.074 Sum_probs=90.6
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~ 247 (496)
+.+..|.++||++|||+|||.|+.++++|...+ +.|+++++|+..++.+++++.+.|.. ++.+...|.+.++
T Consensus 53 ~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g--~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~----- 125 (285)
T d1kpga_ 53 LALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD----- 125 (285)
T ss_dssp HHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-----
T ss_pred HHHHHcCCCCCCEEEEecCcchHHHHHHHhcCC--cceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc-----
Confidence 445667899999999999999999999999874 79999999999999999999999875 4888889987664
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
+.||+|+. .|++-.-+. .....++..+.++| +|||+++..|.+.
T Consensus 126 ~~fD~i~s------i~~~eh~~~--------------~~~~~~~~~~~r~L----kpgG~~~l~~i~~ 169 (285)
T d1kpga_ 126 EPVDRIVS------IGAFEHFGH--------------ERYDAFFSLAHRLL----PADGVMLLHTITG 169 (285)
T ss_dssp CCCSEEEE------ESCGGGTCT--------------TTHHHHHHHHHHHS----CTTCEEEEEEEEE
T ss_pred ccccceee------ehhhhhcCc--------------hhHHHHHHHHHhhc----CCCCcEEEEEEec
Confidence 67999975 333321110 11234677777775 9999999877653
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.97 E-value=8.3e-10 Score=104.25 Aligned_cols=106 Identities=16% Similarity=0.224 Sum_probs=80.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
++.+|||+|||+|..+..++.+. ..|+|+|+|+.+++.+++++...|. ++.+.++|+..++. .+.||.|++
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g---~~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~~~---~~~fD~i~~-- 107 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNI---NRKFDLITC-- 107 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCC---SCCEEEEEE--
T ss_pred CCCeEEEEeCcCCHHHHHHHHhC---CccEeeccchhhhhhccccccccCc-cceeeccchhhhcc---cccccccce--
Confidence 45799999999999999988762 4799999999999999999998887 68899999988752 268999996
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
.|+..+. ..+.+++ ..+|..+.+.| +|||.|++..
T Consensus 108 ~~~~~~~---------~~~~~~~-------~~~l~~~~~~L----kpgG~~i~~~ 142 (246)
T d1y8ca_ 108 CLDSTNY---------IIDSDDL-------KKYFKAVSNHL----KEGGVFIFDI 142 (246)
T ss_dssp CTTGGGG---------CCSHHHH-------HHHHHHHHTTE----EEEEEEEEEE
T ss_pred eeeeeec---------cCCHHHH-------HHHHHHHHHhC----CCCeEEEEEe
Confidence 1122221 1223332 34677777776 9999999754
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.96 E-value=9e-10 Score=100.86 Aligned_cols=81 Identities=19% Similarity=0.182 Sum_probs=64.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe--EEEEecCCCCCccc-cCCCCcCEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN--TIVCNYDGNELPKV-LGLNTVDRVL 254 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n--v~v~~~D~~~~~~~-~~~~~fD~VL 254 (496)
.|.+|||+|||+|..++..+.. +...|+.+|.+...++.+++|++.+++.+ +.++..|...+... .....||+|+
T Consensus 43 ~~~~vLDlFaGsG~~glEalSR--GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIF 120 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVF 120 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred ccceEeecccCccceeeeeeee--cceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEE
Confidence 6889999999999999876654 56799999999999999999999999864 66666665433221 1235799999
Q ss_pred ECCCCC
Q 010971 255 LDAPCS 260 (496)
Q Consensus 255 lDaPCS 260 (496)
+|||+.
T Consensus 121 lDPPY~ 126 (183)
T d2ifta1 121 LDPPFH 126 (183)
T ss_dssp ECCCSS
T ss_pred echhHh
Confidence 999964
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.91 E-value=1.2e-09 Score=107.96 Aligned_cols=150 Identities=14% Similarity=0.139 Sum_probs=101.6
Q ss_pred HHHhcCCCCCCeEeeccCCCchHHHHHHHHcCC----CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc
Q 010971 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKN----TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL 245 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~----~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~ 245 (496)
+..++.++++.+|||.|||+|+..+.+...+.. ...++|+|+++..+..++.|+...+.... +.+.|.....
T Consensus 109 ~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~-~~~~d~~~~~--- 184 (328)
T d2f8la1 109 LEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMT-LLHQDGLANL--- 184 (328)
T ss_dssp HHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCE-EEESCTTSCC---
T ss_pred HHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhh-hhcccccccc---
Confidence 344567888999999999999999988776543 23799999999999999999988887543 4556654332
Q ss_pred CCCCcCEEEECCCCCCCCcccCCch--hhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE-EeCCCCCcCCHH
Q 010971 246 GLNTVDRVLLDAPCSGTGVISKDES--VKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY-STCSIMVTENEA 322 (496)
Q Consensus 246 ~~~~fD~VLlDaPCSg~G~i~r~p~--~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVY-STCSi~~eENE~ 322 (496)
....||+|+.+||++......+... ...... ....+.-.+.+++++| +|||++++ ..+|++...+..
T Consensus 185 ~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~------~~~~~~~Fi~~~~~~L----k~~G~~~~I~p~~~l~~~~~~ 254 (328)
T d2f8la1 185 LVDPVDVVISDLPVGYYPDDENAKTFELCREEG------HSFAHFLFIEQGMRYT----KPGGYLFFLVPDAMFGTSDFA 254 (328)
T ss_dssp CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSS------CEEHHHHHHHHHHHTE----EEEEEEEEEEEGGGGGSTTHH
T ss_pred ccccccccccCCCCCCCccchhhhhcchhcccC------cchHHHHHHHHHHHhc----CCCCceEEEecCccccCchhH
Confidence 2368999999999965432211111 011111 1123344688899987 99998765 567777777766
Q ss_pred HHH-HHHHhCCc
Q 010971 323 VID-YALKKRDV 333 (496)
Q Consensus 323 vV~-~~L~~~~~ 333 (496)
.+. +++++..+
T Consensus 255 ~lR~~L~~~~~i 266 (328)
T d2f8la1 255 KVDKFIKKNGHI 266 (328)
T ss_dssp HHHHHHHHHEEE
T ss_pred HHHHHHHhCCcE
Confidence 665 44555433
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=2.1e-09 Score=103.69 Aligned_cols=72 Identities=14% Similarity=0.258 Sum_probs=61.0
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
+.++.+|||+|||+|..+.++++..++ ..++++|+|+..++.++++ ..++.++.+|+..+| +..+.||.|++
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~-~~~~giD~s~~~~~~a~~~-----~~~~~~~~~d~~~l~--~~~~sfD~v~~ 153 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALPE-ITTFGLDVSKVAIKAAAKR-----YPQVTFCVASSHRLP--FSDTSMDAIIR 153 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCTT-SEEEEEESCHHHHHHHHHH-----CTTSEEEECCTTSCS--BCTTCEEEEEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCCC-CEEEEecchHhhhhhhhcc-----cccccceeeehhhcc--CCCCCEEEEee
Confidence 567889999999999999999998754 7899999999999887654 346788899999887 44589999985
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=98.89 E-value=2.9e-09 Score=95.31 Aligned_cols=116 Identities=6% Similarity=-0.036 Sum_probs=81.6
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC------------CeEEEEecCCCCC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV------------TNTIVCNYDGNEL 241 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~------------~nv~v~~~D~~~~ 241 (496)
|.+.||.+|||+|||+|..+.+||.. ...|+|+|+|+..++.+++++...+. .++.+...|...+
T Consensus 16 l~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 92 (201)
T d1pjza_ 16 LNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL 92 (201)
T ss_dssp HCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccc
Confidence 56889999999999999999999985 36999999999999999999866543 2345666777666
Q ss_pred ccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 242 ~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
+... ...||.|++- +++ .....++ ....+....+.| ||||.++..+.+...
T Consensus 93 ~~~~-~~~~D~i~~~------~~l-------~~l~~~~-------~~~~~~~i~~~L----kpgG~l~l~~~~~~~ 143 (201)
T d1pjza_ 93 TARD-IGHCAAFYDR------AAM-------IALPADM-------RERYVQHLEALM----PQACSGLLITLEYDQ 143 (201)
T ss_dssp THHH-HHSEEEEEEE------SCG-------GGSCHHH-------HHHHHHHHHHHS----CSEEEEEEEEESSCS
T ss_pred cccc-ccceeEEEEE------eee-------Eecchhh-------hHHHHHHHHHhc----CCCcEEEEEEccccc
Confidence 4322 2579999761 111 1112121 133566666665 999998877766543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.89 E-value=5.2e-09 Score=95.90 Aligned_cols=97 Identities=14% Similarity=0.195 Sum_probs=71.3
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.++.+|||+|||+|..+..++ .++|+|+|+..++.++++ ++.+++.|+..++. ..+.||.|++
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l~~--~~~~fD~I~~- 97 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR-------GVFVLKGTAENLPL--KDESFDFALM- 97 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHT-------TCEEEECBTTBCCS--CTTCEEEEEE-
T ss_pred CCCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccc-------cccccccccccccc--cccccccccc-
Confidence 457799999999998776552 368999999999987763 57889999988863 4578999986
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
..++..-++ + ..+|.++.++| +|||.|+.++...
T Consensus 98 -----~~~l~h~~d------~----------~~~l~~~~~~L----~pgG~l~i~~~~~ 131 (208)
T d1vlma_ 98 -----VTTICFVDD------P----------ERALKEAYRIL----KKGGYLIVGIVDR 131 (208)
T ss_dssp -----ESCGGGSSC------H----------HHHHHHHHHHE----EEEEEEEEEEECS
T ss_pred -----ccccccccc------c----------ccchhhhhhcC----CCCceEEEEecCC
Confidence 223322221 1 23577777776 9999999887643
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.88 E-value=1.7e-08 Score=96.16 Aligned_cols=120 Identities=19% Similarity=0.158 Sum_probs=90.4
Q ss_pred hhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccC
Q 010971 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLG 246 (496)
Q Consensus 168 ~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~ 246 (496)
..++..++..+..+|||+|||+|..+..+++..++ ..++++|+ +..+..+++++...|+. ++.++.+|+....
T Consensus 70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~---- 143 (253)
T d1tw3a2 70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPH-VSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL---- 143 (253)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC----
T ss_pred HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcce-eEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc----
Confidence 34455667778889999999999999999998754 68899998 67899999999999885 5999999986531
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
...||+|++- .+ ...++.++. .++|.++.+.| +|||+|+........
T Consensus 144 ~~~~D~v~~~------~v-------lh~~~d~~~-------~~~L~~~~~~L----kPGG~l~i~e~~~~~ 190 (253)
T d1tw3a2 144 PRKADAIILS------FV-------LLNWPDHDA-------VRILTRCAEAL----EPGGRILIHERDDLH 190 (253)
T ss_dssp SSCEEEEEEE------SC-------GGGSCHHHH-------HHHHHHHHHTE----EEEEEEEEEECCBCG
T ss_pred ccchhheeec------cc-------cccCCchhh-------HHHHHHHHHhc----CCCcEEEEEeccCCC
Confidence 2579999861 11 122333332 45788888886 999999987765443
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=98.87 E-value=1.7e-09 Score=100.64 Aligned_cols=101 Identities=17% Similarity=0.223 Sum_probs=73.1
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.++.+|||+|||+|..+..|+.. ...|+|+|+|+.+++.++++ +..+ ++.+|+..++ +..+.||+|++-
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~----~~~~--~~~~~~~~l~--~~~~~fD~ii~~ 109 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREK----GVKN--VVEAKAEDLP--FPSGAFEAVLAL 109 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHH----TCSC--EEECCTTSCC--SCTTCEEEEEEC
T ss_pred CCCCEEEEECCCCchhccccccc---ceEEEEeecccccccccccc----cccc--cccccccccc--cccccccceeee
Confidence 46789999999999999999875 35899999999999988775 3333 4568888876 345899999862
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
. +++..-| -..++|..+.++| +|||+|+.++-
T Consensus 110 ~-----~~~~~~~----------------d~~~~l~~i~r~L----k~gG~~ii~~~ 141 (246)
T d2avna1 110 G-----DVLSYVE----------------NKDKAFSEIRRVL----VPDGLLIATVD 141 (246)
T ss_dssp S-----SHHHHCS----------------CHHHHHHHHHHHE----EEEEEEEEEEE
T ss_pred c-----chhhhhh----------------hHHHHHHHHHhhc----CcCcEEEEEEC
Confidence 1 1111111 1233577777776 99999998763
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=1.7e-08 Score=96.81 Aligned_cols=148 Identities=14% Similarity=0.160 Sum_probs=95.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCC--ccc--cCCCCcCE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL--PKV--LGLNTVDR 252 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~--~~~--~~~~~fD~ 252 (496)
+.-+|||+|||+|..++.|+...++ ..++|+|+++..++.++.|++++++.+ +.+.+.+.... ... ...+.||.
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~-~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNG-WYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCC-ccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 3568999999999999999998865 799999999999999999999999976 66666543321 111 12357999
Q ss_pred EEECCCCCCCCcccC----------CchhhccCCHHHH-HHH--HHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcC
Q 010971 253 VLLDAPCSGTGVISK----------DESVKTSKSLEDI-QKC--SYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE 319 (496)
Q Consensus 253 VLlDaPCSg~G~i~r----------~p~~k~~~s~~~i-~~l--~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eE 319 (496)
|+++||+-.+.-... .|.....-....+ ... ...-++|+..+..++ +..|.+ ||=+...+
T Consensus 140 ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~----~~~g~~---t~~ig~~~ 212 (250)
T d2h00a1 140 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLK----KRLRWY---SCMLGKKC 212 (250)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHG----GGBSCE---EEEESSTT
T ss_pred EEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHh----hcCcEE---EEEecchh
Confidence 999999975432111 1111111010000 000 124577888888876 677755 23355567
Q ss_pred CHHHHHHHHHhCCc
Q 010971 320 NEAVIDYALKKRDV 333 (496)
Q Consensus 320 NE~vV~~~L~~~~~ 333 (496)
+-.-|...|.+.++
T Consensus 213 ~l~~i~~~L~~~g~ 226 (250)
T d2h00a1 213 SLAPLKEELRIQGV 226 (250)
T ss_dssp SHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHcCC
Confidence 76767777777654
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.85 E-value=3.1e-09 Score=97.56 Aligned_cols=140 Identities=18% Similarity=0.229 Sum_probs=101.7
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc---CC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---GL 247 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~---~~ 247 (496)
..+|.+++|+.++|+++|.||.|..|.. +.|.|+|+|.++..++.+.. .-..++.+++.+...+...+ ..
T Consensus 11 l~~l~~~~g~~~vD~T~G~GGhs~~iL~---~~~~viaiD~D~~ai~~a~~----~~~~~~~~~~~~f~~~~~~l~~~~~ 83 (182)
T d1wg8a2 11 LDLLAVRPGGVYVDATLGGAGHARGILE---RGGRVIGLDQDPEAVARAKG----LHLPGLTVVQGNFRHLKRHLAALGV 83 (182)
T ss_dssp HHHHTCCTTCEEEETTCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHH----TCCTTEEEEESCGGGHHHHHHHTTC
T ss_pred HHhcCCCCCCEEEEeCCCCcHHHHHHhc---ccCcEEEEhhhhhHHHHHhh----ccccceeEeehHHHHHHHHHHHcCC
Confidence 4567899999999999999998887766 45899999999999877654 23457888888877764432 34
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHH
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~ 327 (496)
+.+|.||+|--+|...+-. |+ ..+ ..+...|..+.+++ +|||++++.|+. ..| +..|..+
T Consensus 84 ~~vdgIl~DLGvSs~qld~--~~----------re~-~~~~~~L~~~~~~l----k~gg~~~ii~fh--s~E-d~ivk~~ 143 (182)
T d1wg8a2 84 ERVDGILADLGVSSFHLDD--PS----------DEL-NALKEFLEQAAEVL----APGGRLVVIAFH--SLE-DRVVKRF 143 (182)
T ss_dssp SCEEEEEEECSCCHHHHHC--GG----------THH-HHHHHHHHHHHHHE----EEEEEEEEEECS--HHH-HHHHHHH
T ss_pred CccCEEEEEccCCHHHhhc--ch----------HHH-HHHHHHHHHHHhhh----CCCCeEEEEecc--cch-hHHHHHH
Confidence 6899999998777665321 11 112 23445788888887 999999998864 344 3566777
Q ss_pred HHhCCcEEee
Q 010971 328 LKKRDVKLVP 337 (496)
Q Consensus 328 L~~~~~~lv~ 337 (496)
+++..++++.
T Consensus 144 ~~e~~~k~i~ 153 (182)
T d1wg8a2 144 LRESGLKVLT 153 (182)
T ss_dssp HHHHCSEESC
T ss_pred Hhhccceecc
Confidence 7776666553
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=1e-08 Score=96.11 Aligned_cols=132 Identities=13% Similarity=0.021 Sum_probs=91.2
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC-----------------CCeEEE
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-----------------VTNTIV 233 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g-----------------~~nv~v 233 (496)
..++.+.+|.+|||+|||.|.-+.+||.. ...|+|+|+|+..++.++++....+ ..++.+
T Consensus 38 ~~~l~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 114 (229)
T d2bzga1 38 DTFLKGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISL 114 (229)
T ss_dssp HHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEE
T ss_pred HHhcCCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEE
Confidence 35567789999999999999999999885 2589999999999998888765321 135788
Q ss_pred EecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 234 CNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 234 ~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
.+.|...++.. ..+.||.|+. |.....+ .+++. ...+....++| +|||++++.++
T Consensus 115 ~~~d~~~l~~~-~~~~fd~i~~---~~~l~~~----------~~~~r-------~~~~~~~~~~L----kpgG~~~l~~~ 169 (229)
T d2bzga1 115 YCCSIFDLPRT-NIGKFDMIWD---RGALVAI----------NPGDR-------KCYADTMFSLL----GKKFQYLLCVL 169 (229)
T ss_dssp EESCGGGGGGS-CCCCEEEEEE---SSSTTTS----------CGGGH-------HHHHHHHHHTE----EEEEEEEEEEE
T ss_pred EEcchhhcccc-ccCceeEEEE---EEEEEec----------cchhh-------HHHHHHHHhhc----CCcceEEEEEc
Confidence 88898777543 2478999975 2222211 11111 23455666665 99999999998
Q ss_pred CCCCcC--------CHHHHHHHHHh
Q 010971 314 SIMVTE--------NEAVIDYALKK 330 (496)
Q Consensus 314 Si~~eE--------NE~vV~~~L~~ 330 (496)
+..+.+ .++.+..++..
T Consensus 170 ~~~~~~~~gpp~~~~~~el~~lf~~ 194 (229)
T d2bzga1 170 SYDPTKHPGPPFYVPHAEIERLFGK 194 (229)
T ss_dssp ECCTTTCCCSSCCCCHHHHHHHHTT
T ss_pred ccCCCCCCCCCCCCCHHHHHHHhcC
Confidence 875433 34445555543
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=1.4e-08 Score=95.56 Aligned_cols=139 Identities=14% Similarity=0.060 Sum_probs=87.4
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-------------------------
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN------------------------- 230 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n------------------------- 230 (496)
..+|.+|||+|||+|..+..++.. ....|+|+|+|+..++.+++++...+...
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~--~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 126 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhcc--ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHH
Confidence 457889999999999988766543 22379999999999999999987654321
Q ss_pred ----E-EEEecCC--CCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 010971 231 ----T-IVCNYDG--NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK 303 (496)
Q Consensus 231 ----v-~v~~~D~--~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lk 303 (496)
+ .+...+. ..+......+.||+|++- ...+.+.........+|.+..++| |
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~------------------~~l~~~~~~~~~~~~~l~~i~~~L----k 184 (257)
T d2a14a1 127 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTL------------------LAMECACCSLDAYRAALCNLASLL----K 184 (257)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEE------------------SCHHHHCSSHHHHHHHHHHHHTTE----E
T ss_pred HhhhhhcccccccccccccccccCCcccEEeeh------------------hhHHHhcccHHHHHHHHHHHHhcc----C
Confidence 1 1111111 111112344789999861 111111111122345677777765 9
Q ss_pred CCcEEEEEeCCCCC------------cCCHHHHHHHHHhCCcEEeec
Q 010971 304 SGGYIVYSTCSIMV------------TENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 304 pGG~LVYSTCSi~~------------eENE~vV~~~L~~~~~~lv~~ 338 (496)
|||+++.++..-.. -=+.+.|..+|+..|++++++
T Consensus 185 pGG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~ 231 (257)
T d2a14a1 185 PGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQL 231 (257)
T ss_dssp EEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred CCcEEEEEEecccccceeccccccccCCCHHHHHHHHHHCCCEEEEE
Confidence 99999988754211 114667777888888887765
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=98.79 E-value=2.1e-08 Score=96.01 Aligned_cols=137 Identities=16% Similarity=0.138 Sum_probs=94.1
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcC
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD 251 (496)
..+.+.++.+|||+|||+|..|.+|+.... ..|+++|+++..++.+++++. +..++.+.+.|+..++. ..+.||
T Consensus 87 ~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~--~~~~~~~~~~d~~~~~~--~~~~fD 160 (254)
T d1xtpa_ 87 ASLPGHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELA--GMPVGKFILASMETATL--PPNTYD 160 (254)
T ss_dssp HTSTTCCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTT--TSSEEEEEESCGGGCCC--CSSCEE
T ss_pred hhCCCCCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhcccc--ccccceeEEcccccccc--CCCccc
Confidence 445567788999999999999998876543 479999999999999988765 34567888899887753 347899
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe-CCCCC-----cC------
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST-CSIMV-----TE------ 319 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST-CSi~~-----eE------ 319 (496)
+|++--. +. ..+..+ ...+|..+.+.| +|||+|+.+. |.... .+
T Consensus 161 ~I~~~~v------l~-------hl~d~d-------~~~~l~~~~~~L----kpgG~iii~e~~~~~~~~~~d~~d~~~~r 216 (254)
T d1xtpa_ 161 LIVIQWT------AI-------YLTDAD-------FVKFFKHCQQAL----TPNGYIFFKENCSTGDRFLVDKEDSSLTR 216 (254)
T ss_dssp EEEEESC------GG-------GSCHHH-------HHHHHHHHHHHE----EEEEEEEEEEEBC--CCEEEETTTTEEEB
T ss_pred eEEeecc------cc-------ccchhh-------hHHHHHHHHHhc----CCCcEEEEEecCCCCCcceecccCCceeC
Confidence 9997321 11 112222 134677777776 9999999864 22111 01
Q ss_pred CHHHHHHHHHhCCcEEeec
Q 010971 320 NEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 320 NE~vV~~~L~~~~~~lv~~ 338 (496)
.+.-...++++.+++++..
T Consensus 217 s~~~~~~l~~~aGf~ii~~ 235 (254)
T d1xtpa_ 217 SDIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp CHHHHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHHcCCEEEEE
Confidence 2445566666667776654
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.73 E-value=1.6e-08 Score=92.43 Aligned_cols=126 Identities=19% Similarity=0.185 Sum_probs=82.3
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc------ccCCCC
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK------VLGLNT 249 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~------~~~~~~ 249 (496)
.+++..|||+||||||++.++++.+++.+.|+++|+.+- ..+.++.++.+|...... ......
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVMKALLERVGDSK 88 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccchhhhhhhhhccCcc
Confidence 468999999999999999999999888899999998752 135678888888865321 113467
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~ 329 (496)
||+|+.|.-.--+|.. ..++ . .+.+|+..++.+....|++||.+|.=.- ..+....+-+.|+
T Consensus 89 ~DlVlSD~ap~~sg~~----------~~d~-~----~~~~L~~~~l~~a~~~Lk~gG~fV~K~F---~g~~~~~l~~~l~ 150 (180)
T d1ej0a_ 89 VQVVMSDMAPNMSGTP----------AVDI-P----RAMYLVELALEMCRDVLAPGGSFVVKVF---QGEGFDEYLREIR 150 (180)
T ss_dssp EEEEEECCCCCCCSCH----------HHHH-H----HHHHHHHHHHHHHHHHEEEEEEEEEEEE---SSTTHHHHHHHHH
T ss_pred eeEEEecccchhcccc----------hhHH-H----HHHHHHHHHHHhhhhccCCCCcEEEEEe---cCccHHHHHHHHH
Confidence 9999999654444421 1111 1 2233444444444444599999985442 2333444445555
Q ss_pred h
Q 010971 330 K 330 (496)
Q Consensus 330 ~ 330 (496)
.
T Consensus 151 ~ 151 (180)
T d1ej0a_ 151 S 151 (180)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.73 E-value=4e-08 Score=95.37 Aligned_cols=83 Identities=17% Similarity=0.276 Sum_probs=67.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEEEC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
...+|||+|||+|..++.++. .+ ...|+|+|+|+..+..+++|++++|+.+ +.+...|....... ..+.||+|+++
T Consensus 110 ~~~~vld~g~GsG~i~~~la~-~~-~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~-~~~~fDlIVsN 186 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAK-FS-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKE-KFASIEMILSN 186 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHH-HS-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGG-GTTTCCEEEEC
T ss_pred cccEEEEeeeeeehhhhhhhh-cc-cceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccccc-ccCcccEEEEc
Confidence 346899999999999998875 44 4789999999999999999999999987 66677776554221 23689999999
Q ss_pred CCCCCCC
Q 010971 257 APCSGTG 263 (496)
Q Consensus 257 aPCSg~G 263 (496)
||+-.+.
T Consensus 187 PPYI~~~ 193 (271)
T d1nv8a_ 187 PPYVKSS 193 (271)
T ss_dssp CCCBCGG
T ss_pred ccccCcc
Confidence 9986543
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=6.2e-09 Score=98.17 Aligned_cols=115 Identities=12% Similarity=0.089 Sum_probs=90.3
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCC-cccc---C
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL-PKVL---G 246 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~-~~~~---~ 246 (496)
++.....-.+||++|++.|..|+.||..++..|.|+++|.++...+.+++++++.|+.+ +.+..+|+... +... .
T Consensus 53 ~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~ 132 (219)
T d2avda1 53 NLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGE 132 (219)
T ss_dssp HHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTC
T ss_pred HHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcc
Confidence 33333445699999999999999999999878999999999999999999999999976 88999998653 2221 2
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.+.||.|++|+-=+ .+...+..++.+| +|||.||+-..-+
T Consensus 133 ~~~fD~ifiD~dk~-------------------------~y~~~~~~~~~lL----~~GGvii~Dn~l~ 172 (219)
T d2avda1 133 AGTFDVAVVDADKE-------------------------NCSAYYERCLQLL----RPGGILAVLRVLW 172 (219)
T ss_dssp TTCEEEEEECSCST-------------------------THHHHHHHHHHHE----EEEEEEEEECCSG
T ss_pred cCCccEEEEeCCHH-------------------------HHHHHHHHHHHHh----cCCcEEEEeCCcc
Confidence 36899999997511 1233466677776 9999999876654
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.70 E-value=7.5e-09 Score=105.01 Aligned_cols=120 Identities=16% Similarity=0.123 Sum_probs=87.4
Q ss_pred EeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-----------
Q 010971 162 LQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN----------- 230 (496)
Q Consensus 162 iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n----------- 230 (496)
.|....-+.+.++..-.+.+|||+.||+|+.++..|.-.+ ...|++||+|+..++.+++|++.+|+.+
T Consensus 29 ~q~~NRDlsvl~~~~~~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~ 107 (375)
T d2dula1 29 RMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILK 107 (375)
T ss_dssp GGHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEE
T ss_pred HHhhhhHHHHHHHHHhCCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCcccccccccccccc
Confidence 4555554444444434678999999999999998777654 4589999999999999999999998754
Q ss_pred ----EEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Q 010971 231 ----TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (496)
Q Consensus 231 ----v~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG 306 (496)
+.+.+.|+..+... ....||+|-+||. |+. ...|..|++.+ +.||
T Consensus 108 ~~~~~~~~~~Da~~~~~~-~~~~fDvIDiDPf--Gs~------------------------~pfldsAi~a~----~~~G 156 (375)
T d2dula1 108 GEKTIVINHDDANRLMAE-RHRYFHFIDLDPF--GSP------------------------MEFLDTALRSA----KRRG 156 (375)
T ss_dssp SSSEEEEEESCHHHHHHH-STTCEEEEEECCS--SCC------------------------HHHHHHHHHHE----EEEE
T ss_pred ccceeEeehhhhhhhhHh-hcCcCCcccCCCC--CCc------------------------HHHHHHHHHHh----ccCC
Confidence 45566666544322 2357999999984 433 23589999997 7777
Q ss_pred EEEEEeCC
Q 010971 307 YIVYSTCS 314 (496)
Q Consensus 307 ~LVYSTCS 314 (496)
.| +.|||
T Consensus 157 ll-~vTaT 163 (375)
T d2dula1 157 IL-GVTAT 163 (375)
T ss_dssp EE-EEEEC
T ss_pred EE-EEEec
Confidence 55 55666
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.69 E-value=1.1e-08 Score=96.86 Aligned_cols=110 Identities=17% Similarity=0.192 Sum_probs=87.6
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCC-cccc----CCCCc
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL-PKVL----GLNTV 250 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~-~~~~----~~~~f 250 (496)
..-.+||++|++.|..|+.||..++..|.|+++|.++.....+++++++.|+.+ |.++.+|+... +... ..+.|
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 345699999999999999999999888999999999999999999999999976 99999998654 2221 13579
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
|.|++|+- ++ .+...+..++.+| +|||.||+-..-+
T Consensus 138 D~iFiDa~----------------k~---------~y~~~~e~~~~ll----~~gGiii~DNvl~ 173 (227)
T d1susa1 138 DFIFVDAD----------------KD---------NYLNYHKRLIDLV----KVGGVIGYDNTLW 173 (227)
T ss_dssp SEEEECSC----------------ST---------THHHHHHHHHHHB----CTTCCEEEETTTG
T ss_pred eEEEeccc----------------hh---------hhHHHHHHHHhhc----CCCcEEEEccCCC
Confidence 99999974 00 1223456666665 9999999876643
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.68 E-value=3.1e-08 Score=96.01 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=82.4
Q ss_pred HHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC----eEEEEecCCCCCcccc
Q 010971 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT----NTIVCNYDGNELPKVL 245 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~----nv~v~~~D~~~~~~~~ 245 (496)
....|...++.+|||+|||+|..+..|+.. ...|+|+|+|+.+|+.++++....+.. ...+...|...+....
T Consensus 48 l~~~l~~~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T d1xvaa_ 48 LLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV 124 (292)
T ss_dssp HHHHHHHTTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred HHHHhhhcCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccccc
Confidence 344566677889999999999999999875 248999999999999999999887764 2344445544332111
Q ss_pred -CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 246 -GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 246 -~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
....||.|++- + +++..-|+... +.+ .+..+|..+.+.| +|||+|+.++.
T Consensus 125 ~~~~~fd~v~~~----~-~~~~~~~~~~~--~~~-------~~~~~l~~~~~~L----kpgG~li~~~~ 175 (292)
T d1xvaa_ 125 PAGDGFDAVICL----G-NSFAHLPDSKG--DQS-------EHRLALKNIASMV----RPGGLLVIDHR 175 (292)
T ss_dssp CCTTCEEEEEEC----S-SCGGGSCCTTS--SSH-------HHHHHHHHHHHTE----EEEEEEEEEEE
T ss_pred CCCCCceEEEEe----c-CchhhcCCccc--ChH-------HHHHHHHHHHHHc----CcCcEEEEeec
Confidence 23689999862 1 11211111110 111 2355788888876 99999998764
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.68 E-value=1.1e-08 Score=95.80 Aligned_cols=80 Identities=21% Similarity=0.277 Sum_probs=68.5
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCC-cc---ccCCCCcCEE
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL-PK---VLGLNTVDRV 253 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~-~~---~~~~~~fD~V 253 (496)
..+||++|+|.|..|+.||..++..|.|+++|+++..++.++.++++.|+.+ |.++.+|+.++ +. ......||.|
T Consensus 57 pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~i 136 (214)
T d2cl5a1 57 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV 136 (214)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEE
T ss_pred CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccccee
Confidence 4699999999999999999998877999999999999999999999999975 99999998654 22 1223679999
Q ss_pred EECCC
Q 010971 254 LLDAP 258 (496)
Q Consensus 254 LlDaP 258 (496)
++|.-
T Consensus 137 fiD~~ 141 (214)
T d2cl5a1 137 FLDHW 141 (214)
T ss_dssp EECSC
T ss_pred eeccc
Confidence 99953
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=3e-08 Score=98.48 Aligned_cols=85 Identities=11% Similarity=0.040 Sum_probs=65.5
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH-------cCC--CeEEEEecCCCCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR-------MGV--TNTIVCNYDGNEL 241 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r-------~g~--~nv~v~~~D~~~~ 241 (496)
...+.++++++|||+|||.|..+.++|...+ .+.++|+|+++..++.++.+++. .|+ .++.++++|+...
T Consensus 144 ~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~ 222 (328)
T d1nw3a_ 144 IDEIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE 222 (328)
T ss_dssp HHHSCCCTTCEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSH
T ss_pred HHHcCCCCCCEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccc
Confidence 3556789999999999999999999988765 36899999999999888877655 344 4699999999876
Q ss_pred ccccCCCCcCEEEEC
Q 010971 242 PKVLGLNTVDRVLLD 256 (496)
Q Consensus 242 ~~~~~~~~fD~VLlD 256 (496)
+-......+|+|++.
T Consensus 223 ~~~~~~~~advi~~~ 237 (328)
T d1nw3a_ 223 EWRERIANTSVIFVN 237 (328)
T ss_dssp HHHHHHHHCSEEEEC
T ss_pred ccccccCcceEEEEc
Confidence 522100235888864
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=4.2e-08 Score=96.14 Aligned_cols=79 Identities=9% Similarity=0.047 Sum_probs=62.2
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcCEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
...+|.+|||+|||+|..++.+|+. +...|+|+|.++..+ .+..++...|. .++.+++.|...++.. ...||+|
T Consensus 32 ~~~~~~~VLDiGcG~G~lsl~aa~~--Ga~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~~--~~~~D~I 106 (311)
T d2fyta1 32 HIFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVHLP--VEKVDVI 106 (311)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSCCS--CSCEEEE
T ss_pred ccCCcCEEEEECCCCCHHHHHHHHc--CCCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhcCc--cccceEE
Confidence 4457999999999999999887775 335899999999765 45666666665 4699999999887633 3789999
Q ss_pred EECCC
Q 010971 254 LLDAP 258 (496)
Q Consensus 254 LlDaP 258 (496)
+++..
T Consensus 107 vse~~ 111 (311)
T d2fyta1 107 ISEWM 111 (311)
T ss_dssp EECCC
T ss_pred EEeee
Confidence 98754
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.55 E-value=5.2e-07 Score=86.10 Aligned_cols=114 Identities=21% Similarity=0.154 Sum_probs=86.3
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~ 249 (496)
+..++..+..+|||+|||+|..+..|++..++ ..++++|+ +..+..+++++...|..+ +.++..|.... . +.+
T Consensus 74 ~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~-~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~---~-p~~ 147 (256)
T d1qzza2 74 ADAYDWSAVRHVLDVGGGNGGMLAAIALRAPH-LRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP---L-PVT 147 (256)
T ss_dssp HHTSCCTTCCEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC---C-SCC
T ss_pred HhcCCCccCCEEEEECCCCCHHHHHHHHhhcC-cEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc---c-ccc
Confidence 34456667789999999999999999998764 68999997 788999999999999865 88888887642 2 256
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
||.|++- .+...|+.++. .++|.++.+.| +|||+|+.....
T Consensus 148 ~D~v~~~-------------~vLh~~~d~~~-------~~lL~~i~~~L----kpgG~llI~d~~ 188 (256)
T d1qzza2 148 ADVVLLS-------------FVLLNWSDEDA-------LTILRGCVRAL----EPGGRLLVLDRA 188 (256)
T ss_dssp EEEEEEE-------------SCGGGSCHHHH-------HHHHHHHHHHE----EEEEEEEEEECC
T ss_pred chhhhcc-------------ccccccCcHHH-------HHHHHHHHhhc----CCcceeEEEEec
Confidence 9999871 12223443332 45788888887 999999877644
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.55 E-value=8e-08 Score=98.41 Aligned_cols=162 Identities=18% Similarity=0.139 Sum_probs=108.6
Q ss_pred cEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCC------------cEEEEEeCCHHHHHHHHHHHHHc
Q 010971 159 FYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNT------------GLIYANEMKASRLKSLTANLHRM 226 (496)
Q Consensus 159 ~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~------------g~V~A~D~s~~rl~~l~~nl~r~ 226 (496)
+|+.+.- +.+.+.++.|.++.+|||-|||+|+..+.+.+.+... ..++++|+++.....+.-|+--.
T Consensus 144 f~TP~~I-v~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~ 222 (425)
T d2okca1 144 YFTPRPL-IQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLH 222 (425)
T ss_dssp GCCCHHH-HHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHT
T ss_pred hccchhh-hHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhc
Confidence 3444433 4566788899999999999999999999888876532 24999999999999999999888
Q ss_pred CCC--eEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchh-hccCCHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 010971 227 GVT--NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESV-KTSKSLEDIQKCSYLQKQLILAAIDMVDANSK 303 (496)
Q Consensus 227 g~~--nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~-k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lk 303 (496)
|+. +..+.+.|...... ...||+||.+||.+....-...... .+..... ..+.-.|.+++.+| +
T Consensus 223 g~~~~~~~i~~~d~l~~~~---~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~------~~~~~Fi~~~~~~L----k 289 (425)
T d2okca1 223 GIGTDRSPIVCEDSLEKEP---STLVDVILANPPFGTRPAGSVDINRPDFYVETK------NNQLNFLQHMMLML----K 289 (425)
T ss_dssp TCCSSCCSEEECCTTTSCC---SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCS------CHHHHHHHHHHHHE----E
T ss_pred CCccccceeecCchhhhhc---ccccceEEecCCCCCCccccchhhhhhcccccc------cHHHHHHHHHHHhc----C
Confidence 764 34566777665432 3689999999998654322211100 0000001 12334688888887 9
Q ss_pred CCcEEEEEeC--CCCCcCC-HHHHHHHHHhCCcE
Q 010971 304 SGGYIVYSTC--SIMVTEN-EAVIDYALKKRDVK 334 (496)
Q Consensus 304 pGG~LVYSTC--Si~~eEN-E~vV~~~L~~~~~~ 334 (496)
+||++++.+- +++.... ..+-++++++..++
T Consensus 290 ~~G~~~iI~p~~~L~~~~~~~~iR~~Ll~~~~i~ 323 (425)
T d2okca1 290 TGGRAAVVLPDNVLFEAGAGETIRKRLLQDFNLH 323 (425)
T ss_dssp EEEEEEEEEEHHHHHCSTHHHHHHHHHHHHEEEE
T ss_pred CCCeEEEEechHHhhhhhhHHHHHHHHHHhcchh
Confidence 9998877654 3444433 45566777776543
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.55 E-value=6.2e-08 Score=95.39 Aligned_cols=78 Identities=10% Similarity=0.066 Sum_probs=63.6
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
..+|.+|||+|||+|..++.+|++ +...|+|+|.++. ...+.+++...|+.+ |.++++|...++. +...||+|+
T Consensus 31 ~~~~~~VLDiGcG~G~ls~~aa~~--Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~--~~~~~D~iv 105 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVEL--PVEKVDIII 105 (316)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCC--SSSCEEEEE
T ss_pred cCCcCEEEEEecCCcHHHHHHHHh--CCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHccc--ccceeEEEe
Confidence 347999999999999998877764 3358999999975 677788899999865 8999999988763 337899999
Q ss_pred ECCC
Q 010971 255 LDAP 258 (496)
Q Consensus 255 lDaP 258 (496)
++..
T Consensus 106 s~~~ 109 (316)
T d1oria_ 106 SEWM 109 (316)
T ss_dssp ECCC
T ss_pred eeee
Confidence 8755
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.54 E-value=4.9e-08 Score=96.54 Aligned_cols=78 Identities=10% Similarity=0.106 Sum_probs=63.9
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
..+|.+|||+|||+|..++++|+. +...|+|+|.++ .+..++++....|.. ++.++++|...++. +...||+|+
T Consensus 36 ~~~~~~VLDlGcGtG~ls~~aa~~--Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~--~~~~~D~i~ 110 (328)
T d1g6q1_ 36 LFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL--PFPKVDIII 110 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC--SSSCEEEEE
T ss_pred cCCcCEEEEeCCCCCHHHHHHHHh--CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccC--cccceeEEE
Confidence 457999999999999999877765 335899999996 678889999999886 48899999988763 347899999
Q ss_pred ECCC
Q 010971 255 LDAP 258 (496)
Q Consensus 255 lDaP 258 (496)
++..
T Consensus 111 se~~ 114 (328)
T d1g6q1_ 111 SEWM 114 (328)
T ss_dssp ECCC
T ss_pred EEec
Confidence 8654
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=1.4e-07 Score=90.29 Aligned_cols=140 Identities=14% Similarity=0.055 Sum_probs=86.4
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC--------------------------
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-------------------------- 228 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-------------------------- 228 (496)
....|.+|||+|||||..++..+.. ....|+|+|+|+..++.++.++...+.
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~--~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 128 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER 128 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcc--cCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHH
Confidence 3457899999999999876544433 224799999999999999987754321
Q ss_pred ----CeEEEEecCCCCCc----cccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhh
Q 010971 229 ----TNTIVCNYDGNELP----KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300 (496)
Q Consensus 229 ----~nv~v~~~D~~~~~----~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~ 300 (496)
....+...|...-. .....+.||+|++= ...+.+..-.......|.+..++|
T Consensus 129 ~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~------------------~~l~~i~~~~~~~~~~l~~~~~~L-- 188 (263)
T d2g72a1 129 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSA------------------FCLEAVSPDLASFQRALDHITTLL-- 188 (263)
T ss_dssp HHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEE------------------SCHHHHCSSHHHHHHHHHHHHTTE--
T ss_pred HhhhhhhccccccccCCCccccCCcCcCccCeeeeH------------------HHHHHHccCHHHHHHHHHHHHHHc--
Confidence 01123444543211 11223579999861 111111100112345677777776
Q ss_pred cCCCCcEEEEEeCCC------------CCcCCHHHHHHHHHhCCcEEeec
Q 010971 301 NSKSGGYIVYSTCSI------------MVTENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 301 ~lkpGG~LVYSTCSi------------~~eENE~vV~~~L~~~~~~lv~~ 338 (496)
||||+||.++--- ...=+++.|..++...|++++.+
T Consensus 189 --kPGG~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~ 236 (263)
T d2g72a1 189 --RPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDL 236 (263)
T ss_dssp --EEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred --CCCCEEEEecccCCcccccCCcccccCCCCHHHHHHHHHHCCCeEEEE
Confidence 9999999764311 11126677888888888887764
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=98.52 E-value=5.4e-08 Score=90.67 Aligned_cols=101 Identities=13% Similarity=0.111 Sum_probs=72.5
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
..+.+|||+|||+|..+..+++. ...|+|+|+|+..++.++.++. .++.++..|+..++. ++.||.|++
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~~~---~~~fD~I~~- 87 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRLK----DGITYIHSRFEDAQL---PRRYDNIVL- 87 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGCCC---SSCEEEEEE-
T ss_pred CCCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhcccc----ccccccccccccccc---ccccccccc-
Confidence 45779999999999999887764 2479999999999998876642 468888888876642 378999986
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
.+++..-++ ...+|....+.+ |+|||.++.++
T Consensus 88 -----~~vleh~~d----------------~~~~l~~i~~~~---Lk~gG~l~i~~ 119 (225)
T d2p7ia1 88 -----THVLEHIDD----------------PVALLKRINDDW---LAEGGRLFLVC 119 (225)
T ss_dssp -----ESCGGGCSS----------------HHHHHHHHHHTT---EEEEEEEEEEE
T ss_pred -----cceeEecCC----------------HHHHHHHHHHHh---cCCCceEEEEe
Confidence 234432111 123455555322 49999999875
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.49 E-value=1.5e-07 Score=96.06 Aligned_cols=83 Identities=10% Similarity=0.094 Sum_probs=61.3
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC-------C--CeEEE-EecCCCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-------V--TNTIV-CNYDGNE 240 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g-------~--~nv~v-~~~D~~~ 240 (496)
...+++++|++|||+|||.|..+.++|...+. +.|+|+|+++..++.++.+++..+ . ..+.+ ...|...
T Consensus 209 l~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~-~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~ 287 (406)
T d1u2za_ 209 YQQCQLKKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVD 287 (406)
T ss_dssp HHHTTCCTTCEEEEESCTTSHHHHHHHHHHCC-SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTT
T ss_pred HHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhh
Confidence 35578899999999999999999999998763 589999999999999999887643 2 22333 3344333
Q ss_pred Cc---cccCCCCcCEEEEC
Q 010971 241 LP---KVLGLNTVDRVLLD 256 (496)
Q Consensus 241 ~~---~~~~~~~fD~VLlD 256 (496)
.+ ..+ ..+|+|+++
T Consensus 288 ~~~~d~~~--~~adVV~in 304 (406)
T d1u2za_ 288 NNRVAELI--PQCDVILVN 304 (406)
T ss_dssp CHHHHHHG--GGCSEEEEC
T ss_pred cccccccc--ccceEEEEe
Confidence 21 122 468899885
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.33 E-value=5.8e-07 Score=94.39 Aligned_cols=165 Identities=15% Similarity=0.082 Sum_probs=104.0
Q ss_pred cccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCC-----------------cEEEEEeCCHHHHHHH
Q 010971 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNT-----------------GLIYANEMKASRLKSL 219 (496)
Q Consensus 157 ~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~-----------------g~V~A~D~s~~rl~~l 219 (496)
.|.|+=-..-+.+.+.++.|+++.+|+|-|||+|++.+.+...+... ..+++.|+++.....+
T Consensus 143 ~GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la 222 (524)
T d2ar0a1 143 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 222 (524)
T ss_dssp --CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred cchhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHH
Confidence 35343323334566788899999999999999999998877765321 2589999999999999
Q ss_pred HHHHHHcCCCe-----EEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHH
Q 010971 220 TANLHRMGVTN-----TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAA 294 (496)
Q Consensus 220 ~~nl~r~g~~n-----v~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A 294 (496)
.-|+--.|... -.+...|....+ ......||+||.+||.+...-...........+ ..+.-.+.++
T Consensus 223 ~~nl~l~~~~~~i~~~~~~~~~~~l~~d-~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~--------~~~~~Fi~~~ 293 (524)
T d2ar0a1 223 LMNCLLHDIEGNLDHGGAIRLGNTLGSD-GENLPKAHIVATNPPFGSAAGTNITRTFVHPTS--------NKQLCFMQHI 293 (524)
T ss_dssp HHHHHTTTCCCBGGGTBSEEESCTTSHH-HHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCS--------CHHHHHHHHH
T ss_pred HHHHHhhcccccccccchhhhhhhhhhc-ccccccceeEEecCCccccccccchhhhccccc--------cccHHHHHHH
Confidence 98987777632 122333332211 112367999999999976543322111111111 1223468888
Q ss_pred HHhhhhcCCCCcEEEEEeC-CCC-CcCCHH-HHHHHHHhCCcE
Q 010971 295 IDMVDANSKSGGYIVYSTC-SIM-VTENEA-VIDYALKKRDVK 334 (496)
Q Consensus 295 ~~~l~~~lkpGG~LVYSTC-Si~-~eENE~-vV~~~L~~~~~~ 334 (496)
++.| ++||++++.+- +++ ..-.+. +-++++++..++
T Consensus 294 l~~L----k~gGr~aiIlP~~~Lf~~~~~~~iR~~Ll~~~~i~ 332 (524)
T d2ar0a1 294 IETL----HPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLH 332 (524)
T ss_dssp HHHE----EEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHEEEE
T ss_pred HHhc----cccCcEEEEEehHHhhhhhhhHHHHHHHHHcCCce
Confidence 9887 99999988764 443 333344 455666665443
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=6.8e-07 Score=85.42 Aligned_cols=113 Identities=8% Similarity=0.071 Sum_probs=73.9
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcC----C-CcEEEEEeCCHHHHHHHHHHHHHcC-CCeEEE--EecCCCCC----cc
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMK----N-TGLIYANEMKASRLKSLTANLHRMG-VTNTIV--CNYDGNEL----PK 243 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~----~-~g~V~A~D~s~~rl~~l~~nl~r~g-~~nv~v--~~~D~~~~----~~ 243 (496)
.+++.+|||+|||+|..+..|+..+. + ...++++|+|+.+++.+++++.... +.++.+ ...++..+ ..
T Consensus 38 ~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (280)
T d1jqea_ 38 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLE 117 (280)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTT
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcc
Confidence 34556899999999999988876542 2 2368999999999999999987653 344443 33332211 11
Q ss_pred ccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 244 ~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
....+.||+|++ ..++-.-+ .+ ...|..+.++| +|||+|+..+.+
T Consensus 118 ~~~~~~fD~I~~------~~~l~~~~------d~----------~~~l~~l~~~L----kpgG~l~i~~~~ 162 (280)
T d1jqea_ 118 KKELQKWDFIHM------IQMLYYVK------DI----------PATLKFFHSLL----GTNAKMLIIVVS 162 (280)
T ss_dssp SSSCCCEEEEEE------ESCGGGCS------CH----------HHHHHHHHHTE----EEEEEEEEEEEC
T ss_pred cCCCCceeEEEE------ccceecCC------CH----------HHHHHHHHhhC----CCCCEEEEEEec
Confidence 123478999987 12221111 11 23577777776 999999887654
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.21 E-value=1.4e-06 Score=83.20 Aligned_cols=89 Identities=15% Similarity=0.016 Sum_probs=72.0
Q ss_pred chhHHHhcCCCCC--CeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC---------CeEEEEe
Q 010971 167 SFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV---------TNTIVCN 235 (496)
Q Consensus 167 S~l~v~~L~~~~g--~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~---------~nv~v~~ 235 (496)
....+.++..+.+ .+|||++||.|.-+..+|.+- +.|+++|.++.....+..++.++.. .++.+++
T Consensus 75 ~~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G---~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~ 151 (250)
T d2oyra1 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_dssp GSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHT---CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred hhHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCC---CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeec
Confidence 3455677766655 489999999999999999872 6899999999999999999988642 3789999
Q ss_pred cCCCCCccccCCCCcCEEEECCCC
Q 010971 236 YDGNELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 236 ~D~~~~~~~~~~~~fD~VLlDaPC 259 (496)
+|+..+.... ...||+|.+||+.
T Consensus 152 ~Ds~~~L~~~-~~~~DvIYlDPMF 174 (250)
T d2oyra1 152 ASSLTALTDI-TPRPQVVYLDPMF 174 (250)
T ss_dssp SCHHHHSTTC-SSCCSEEEECCCC
T ss_pred CcHHHHHhcc-CCCCCEEEECCCC
Confidence 9987764433 2679999999985
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=5.9e-06 Score=76.67 Aligned_cols=75 Identities=19% Similarity=0.220 Sum_probs=65.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
++.+|||+|+|.|-=++.+|-+.+ ...++.+|.+..++.-+++-...+|+.|+.+.+..+..+.. ...||+|.+=
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p-~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~---~~~fD~V~sR 139 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS---EPPFDGVISR 139 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC---CSCEEEEECS
T ss_pred cCCceeeeeccCCceeeehhhhcc-cceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhcc---ccccceehhh
Confidence 457999999999999999987765 48999999999999999999999999999999998887643 2579999763
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.90 E-value=1.3e-05 Score=75.83 Aligned_cols=135 Identities=16% Similarity=0.102 Sum_probs=92.5
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc-CCCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-GLNT 249 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~-~~~~ 249 (496)
...+....+.+|+|+|+|.|-=++.||-++++ ..|+.+|.+..++.-++.-...+|+.|+.+++..+..+.... ....
T Consensus 63 ~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~-~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~ 141 (239)
T d1xdza_ 63 AFYVDFNQVNTICDVGAGAGFPSLPIKICFPH-LHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRES 141 (239)
T ss_dssp GGTSCGGGCCEEEEECSSSCTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTC
T ss_pred hhhhcccCCCeEEeecCCCchHHHHHHHhCCC-ccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhcccccccccc
Confidence 33444346789999999999999999887764 789999999999999999999999999999887765443211 1267
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~ 329 (496)
||.|++=|= .+. ..+|.-+..++ ++||++++---.- .++--+.....+.
T Consensus 142 ~D~v~sRAv----------------a~l----------~~ll~~~~~~l----~~~g~~i~~KG~~-~~~El~~a~~~~~ 190 (239)
T d1xdza_ 142 YDIVTARAV----------------ARL----------SVLSELCLPLV----KKNGLFVALKAAS-AEEELNAGKKAIT 190 (239)
T ss_dssp EEEEEEECC----------------SCH----------HHHHHHHGGGE----EEEEEEEEEECC--CHHHHHHHHHHHH
T ss_pred ceEEEEhhh----------------hCH----------HHHHHHHhhhc----ccCCEEEEECCCC-hHHHHHHHHHHHH
Confidence 999987332 111 12455566665 9999988754332 2222233344555
Q ss_pred hCCcEEee
Q 010971 330 KRDVKLVP 337 (496)
Q Consensus 330 ~~~~~lv~ 337 (496)
..++++..
T Consensus 191 ~~~~~~~~ 198 (239)
T d1xdza_ 191 TLGGELEN 198 (239)
T ss_dssp HTTEEEEE
T ss_pred HcCCEEEE
Confidence 55655544
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.90 E-value=1e-05 Score=76.37 Aligned_cols=85 Identities=15% Similarity=0.133 Sum_probs=68.8
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~ 248 (496)
-.+..+++.++++||++|+|+|..|.+|+... ..|+|+|+|+..+..++.+.. +..|+.++++|+..++. +..
T Consensus 12 ~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~---~~v~avE~D~~l~~~l~~~~~--~~~n~~i~~~D~l~~~~--~~~ 84 (235)
T d1qama_ 12 KIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLV--DHDNFQVLNKDILQFKF--PKN 84 (235)
T ss_dssp HHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTT--TCCSEEEECCCGGGCCC--CSS
T ss_pred HHHHhcCCCCCCeEEEECCCchHHHHHHHhCc---CceEEEeeccchHHHHHHHhh--cccchhhhhhhhhhccc--ccc
Confidence 34667788999999999999999999999863 589999999999998887664 34689999999988752 223
Q ss_pred CcCEEEECCCCC
Q 010971 249 TVDRVLLDAPCS 260 (496)
Q Consensus 249 ~fD~VLlDaPCS 260 (496)
...+|+-+-|+.
T Consensus 85 ~~~~vv~NLPYn 96 (235)
T d1qama_ 85 QSYKIFGNIPYN 96 (235)
T ss_dssp CCCEEEEECCGG
T ss_pred ccceeeeeehhh
Confidence 456788998853
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.73 E-value=3e-05 Score=76.06 Aligned_cols=84 Identities=12% Similarity=0.170 Sum_probs=64.3
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc--CC---CeEEEEecCCCCCccccC
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--GV---TNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~--g~---~nv~v~~~D~~~~~~~~~ 246 (496)
+++.+. ..+||.+|.|.|+.+..++.. .+...|+++|+++.-++.+++.+... +. .++.++..|++.+-...
T Consensus 72 l~~~~~-pk~VLiiG~G~G~~~~~ll~~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~- 148 (312)
T d1uira_ 72 MLTHPE-PKRVLIVGGGEGATLREVLKH-PTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT- 148 (312)
T ss_dssp HHHSSC-CCEEEEEECTTSHHHHHHTTS-TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC-
T ss_pred hhhCCC-cceEEEeCCCchHHHHHHHhc-CCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc-
Confidence 344443 468999999999988776654 33468999999999999999887553 22 35899999998875433
Q ss_pred CCCcCEEEECCC
Q 010971 247 LNTVDRVLLDAP 258 (496)
Q Consensus 247 ~~~fD~VLlDaP 258 (496)
...||+|++|++
T Consensus 149 ~~~yDvIi~D~~ 160 (312)
T d1uira_ 149 EERYDVVIIDLT 160 (312)
T ss_dssp CCCEEEEEEECC
T ss_pred CCcccEEEEeCC
Confidence 368999999975
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.65 E-value=1.9e-05 Score=74.88 Aligned_cols=134 Identities=14% Similarity=0.097 Sum_probs=69.5
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec-CCCCCccccCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY-DGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~-D~~~~~~~~~~~~fD~VL 254 (496)
++++.+|+|+||||||.|.+++.+.+. ..|.|.++--.- ...--....++..-+.+... |...+ ....+|.||
T Consensus 64 ~~~~~~vvDlG~~pGgws~~~a~~~~v-~~V~g~~iG~d~-~e~P~~~~~~~~ni~~~~~~~dv~~l----~~~~~D~vl 137 (257)
T d2p41a1 64 VTPEGKVVDLGCGRGGWSYYCGGLKNV-REVKGLTKGGPG-HEEPIPMSTYGWNLVRLQSGVDVFFI----PPERCDTLL 137 (257)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTSTTE-EEEEEECCCSTT-SCCCCCCCSTTGGGEEEECSCCTTTS----CCCCCSEEE
T ss_pred ccCCCeEEEecCCCChHHHHHHhhcCC-CceeEEEecCcc-ccCCccccccccccccchhhhhHHhc----CCCcCCEEE
Confidence 577889999999999999988877432 456666662110 00000011112222333322 22222 347899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHH---HHHHhC
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID---YALKKR 331 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~---~~L~~~ 331 (496)
||.-=| +|. |++ +.... .++|.-|.+.| +|||.+|.= ++.-=.++|++ .+-.++
T Consensus 138 cDm~es-s~~----~~v------d~~Rt-----l~vLela~~wL----k~gg~FvvK---Vl~py~~~v~e~le~lq~~f 194 (257)
T d2p41a1 138 CDIGES-SPN----PTV------EAGRT-----LRVLNLVENWL----SNNTQFCVK---VLNPYMSSVIEKMEALQRKH 194 (257)
T ss_dssp ECCCCC-CSS----HHH------HHHHH-----HHHHHHHHHHC----CTTCEEEEE---ESCCCSHHHHHHHHHHHHHH
T ss_pred eeCCCC-CCC----chh------hhhhH-----HHHHHHHHHHc----ccCCEEEEE---ECCCCChHHHHHHHHHHHHh
Confidence 995212 321 222 11111 24566666765 999987642 22222344444 333344
Q ss_pred CcEEeec
Q 010971 332 DVKLVPC 338 (496)
Q Consensus 332 ~~~lv~~ 338 (496)
+-.+|..
T Consensus 195 gg~lVR~ 201 (257)
T d2p41a1 195 GGALVRN 201 (257)
T ss_dssp CCEEECC
T ss_pred CCeeEcC
Confidence 5455543
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.61 E-value=4.6e-05 Score=74.16 Aligned_cols=133 Identities=15% Similarity=0.166 Sum_probs=86.2
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEecCCCCCccccC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----VTNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g----~~nv~v~~~D~~~~~~~~~ 246 (496)
++++.+.| .+||-+|.|.|+.+..++... +...|+++|+++.-++.++..+.... -.++.++..|+..+-...
T Consensus 83 pl~~~~~p-k~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~- 159 (295)
T d1inla_ 83 PMFLHPNP-KKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF- 159 (295)
T ss_dssp HHHHSSSC-CEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC-
T ss_pred hHhhCCCC-ceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcC-
Confidence 44555554 699999999999887666543 33589999999999999988765432 245899999998875543
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~ 326 (496)
...||+|++|++....|.. .. . ...+.+..+.+.| +|||.+|.-+-|. .-+...+..
T Consensus 160 ~~~yDvIi~D~~dp~~~~~----~~--L-----------~t~efy~~~~~~L----~~~Gi~v~q~~sp--~~~~~~~~~ 216 (295)
T d1inla_ 160 KNEFDVIIIDSTDPTAGQG----GH--L-----------FTEEFYQACYDAL----KEDGVFSAETEDP--FYDIGWFKL 216 (295)
T ss_dssp SSCEEEEEEEC----------------C-----------CSHHHHHHHHHHE----EEEEEEEEECCCT--TTTHHHHHH
T ss_pred CCCCCEEEEcCCCCCcCch----hh--h-----------ccHHHHHHHHhhc----CCCcEEEEecCCh--hhhhHHHHH
Confidence 3689999999875322210 00 0 1244566666665 9999998754443 334444444
Q ss_pred HHH
Q 010971 327 ALK 329 (496)
Q Consensus 327 ~L~ 329 (496)
+++
T Consensus 217 i~~ 219 (295)
T d1inla_ 217 AYR 219 (295)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=8.8e-05 Score=71.50 Aligned_cols=85 Identities=14% Similarity=0.103 Sum_probs=71.3
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~ 247 (496)
..+.++++.++++||++|+|+|..|..|+... ..|+|+|+|+..+..|++.+..... .++.++++|+..+..
T Consensus 12 kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~---~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~---- 84 (278)
T d1zq9a1 12 SIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL---- 84 (278)
T ss_dssp HHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC----
T ss_pred HHHHHhCCCCCCEEEEECCCchHHHHHHHhcC---CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh----
Confidence 34667788899999999999999999999863 5899999999999999998876554 579999999987652
Q ss_pred CCcCEEEECCCCC
Q 010971 248 NTVDRVLLDAPCS 260 (496)
Q Consensus 248 ~~fD~VLlDaPCS 260 (496)
..++.|+-+-|+.
T Consensus 85 ~~~~~vV~NLPY~ 97 (278)
T d1zq9a1 85 PFFDTCVANLPYQ 97 (278)
T ss_dssp CCCSEEEEECCGG
T ss_pred hhhhhhhcchHHH
Confidence 4578899999953
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.54 E-value=5.7e-06 Score=78.64 Aligned_cols=86 Identities=14% Similarity=0.112 Sum_probs=69.8
Q ss_pred hhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCC
Q 010971 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 168 ~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~ 247 (496)
--.+..+++.++++||++|+|+|..|..|+... ..|+|+|+|+..+..++.++. +..|+.++++|+..++. ..
T Consensus 19 ~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~---~~v~aIE~D~~l~~~l~~~~~--~~~n~~ii~~D~l~~~~--~~ 91 (245)
T d1yuba_ 19 NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQF--PN 91 (245)
T ss_dssp HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTC--CC
T ss_pred HHHHHhcCCCCCCeEEEECCCccHHHHHHHhhc---CceeEeeecccchhhhhhhhh--hccchhhhhhhhhcccc--cc
Confidence 455778889999999999999999999998862 589999999988877765543 34689999999988753 33
Q ss_pred CCcCEEEECCCCC
Q 010971 248 NTVDRVLLDAPCS 260 (496)
Q Consensus 248 ~~fD~VLlDaPCS 260 (496)
..++.|+.+-|+.
T Consensus 92 ~~~~~vv~NLPY~ 104 (245)
T d1yuba_ 92 KQRYKIVGNIPYH 104 (245)
T ss_dssp SSEEEEEEECCSS
T ss_pred ceeeeEeeeeehh
Confidence 5678899998864
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.38 E-value=0.00014 Score=70.50 Aligned_cols=133 Identities=14% Similarity=0.175 Sum_probs=88.9
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEecCCCCCccccCC
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----VTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g----~~nv~v~~~D~~~~~~~~~~ 247 (496)
+++.+. -.+||=+|.|.|+....+...- +-..|+++|+++.-++.++.-+.... -.++.++..|+..+-.....
T Consensus 75 ~~~~~~-pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~ 152 (290)
T d1xj5a_ 75 LCSIPN-PKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAE 152 (290)
T ss_dssp HTTSSC-CCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCT
T ss_pred HhhCCC-CcceEEecCCchHHHHHHHhcc-cceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccc
Confidence 333443 3589999999999887665532 33589999999999999988664321 24588999999877543334
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHH
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~ 327 (496)
+.||+|++|++-. .|. +... ...+.+..+.+.| +|||.+|.-+-|. ..+...+..+
T Consensus 153 ~~yDvIi~D~~dp-~~~----~~~L-------------~t~eF~~~~~~~L----~~~Gi~v~q~~s~--~~~~~~~~~i 208 (290)
T d1xj5a_ 153 GSYDAVIVDSSDP-IGP----AKEL-------------FEKPFFQSVARAL----RPGGVVCTQAESL--WLHMDIIEDI 208 (290)
T ss_dssp TCEEEEEECCCCT-TSG----GGGG-------------GSHHHHHHHHHHE----EEEEEEEEECCCT--TTCHHHHHHH
T ss_pred cCccEEEEcCCCC-CCc----chhh-------------CCHHHHHHHHHhc----CCCcEEEEecCCc--HHHHHHHHHH
Confidence 6899999998842 221 1111 1234455555655 9999999876554 4466666655
Q ss_pred HHh
Q 010971 328 LKK 330 (496)
Q Consensus 328 L~~ 330 (496)
++.
T Consensus 209 ~~~ 211 (290)
T d1xj5a_ 209 VSN 211 (290)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.33 E-value=0.00022 Score=69.65 Aligned_cols=132 Identities=18% Similarity=0.145 Sum_probs=84.6
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEecCCCCCccccC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----VTNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g----~~nv~v~~~D~~~~~~~~~ 246 (496)
++++.+. ..+||-+|.|.|+.+..+... .+...|+++|+++.-++.++.-+..+. -.++.++..|++.+-.. .
T Consensus 100 pl~~~~~-pk~VLIiGgG~G~~~rellk~-~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~-~ 176 (312)
T d2b2ca1 100 PMFAHPD-PKRVLIIGGGDGGILREVLKH-ESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-H 176 (312)
T ss_dssp HHHHSSS-CCEEEEESCTTSHHHHHHTTC-TTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-C
T ss_pred HHhcCCC-CCeEEEeCCCchHHHHHHHHc-CCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh-C
Confidence 3444554 468999999999988766653 233689999999999999998765432 24589999999887543 2
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~ 326 (496)
...||+|++|++-. .|. +. .-..++.+..+.+.| +|||.+|.=+-| +.-+...+..
T Consensus 177 ~~~yDvII~D~~dp-~~~----~~-------------~L~t~eFy~~~~~~L----~~~Gi~v~q~~s--~~~~~~~~~~ 232 (312)
T d2b2ca1 177 KNEFDVIITDSSDP-VGP----AE-------------SLFGQSYYELLRDAL----KEDGILSSQGES--VWLHLPLIAH 232 (312)
T ss_dssp TTCEEEEEECCC-------------------------------HHHHHHHHE----EEEEEEEEECCC--TTTCHHHHHH
T ss_pred CCCCCEEEEcCCCC-CCc----ch-------------hhhhHHHHHHHHhhc----CCCcEEEEecCC--hHHhHHHHHH
Confidence 47899999998732 110 00 111234455555655 999998865333 3345555554
Q ss_pred HHH
Q 010971 327 ALK 329 (496)
Q Consensus 327 ~L~ 329 (496)
+++
T Consensus 233 i~~ 235 (312)
T d2b2ca1 233 LVA 235 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.32 E-value=0.00025 Score=68.47 Aligned_cols=131 Identities=14% Similarity=0.129 Sum_probs=84.7
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc----CCCeEEEEecCCCCCccccCC
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM----GVTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~----g~~nv~v~~~D~~~~~~~~~~ 247 (496)
+++.+. ..+||-+|.|.|+.+..+... .+...|+++|+++.-++.++.-+..+ .-.++.++..|++.+-... .
T Consensus 73 l~~~~~-pk~vLiiGgG~G~~~~~~l~~-~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~-~ 149 (285)
T d2o07a1 73 LCSHPN-PRKVLIIGGGDGGVLREVVKH-PSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN-Q 149 (285)
T ss_dssp HTTSSS-CCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC-S
T ss_pred hhhCcC-cCeEEEeCCCchHHHHHHHHc-CCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcC-C
Confidence 334443 468999999999988776654 23469999999999999998876532 1246899999998875433 3
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHH
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~ 327 (496)
.+||+|++|++= ..|. . ..-..++.+..+.+.| +|||.+|.-+-|.. -+...+..+
T Consensus 150 ~~yDvIi~D~~~-p~~~------------~-----~~L~t~eF~~~~~~~L----~~~Gi~v~q~~s~~--~~~~~~~~~ 205 (285)
T d2o07a1 150 DAFDVIITDSSD-PMGP------------A-----ESLFKESYYQLMKTAL----KEDGVLCCQGECQW--LHLDLIKEM 205 (285)
T ss_dssp SCEEEEEEECC-----------------------------CHHHHHHHHHE----EEEEEEEEEEECTT--TCHHHHHHH
T ss_pred CCCCEEEEcCCC-CCCc------------c-----cccccHHHHHHHHHhc----CCCCeEEEeccchh--hhHHHHHHH
Confidence 689999999862 1110 0 0112344566666665 99999987543332 244444444
Q ss_pred HH
Q 010971 328 LK 329 (496)
Q Consensus 328 L~ 329 (496)
++
T Consensus 206 ~~ 207 (285)
T d2o07a1 206 RQ 207 (285)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.29 E-value=0.0001 Score=70.91 Aligned_cols=113 Identities=16% Similarity=0.159 Sum_probs=76.3
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc----------CCCeEEEEecCCCCC
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM----------GVTNTIVCNYDGNEL 241 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~----------g~~nv~v~~~D~~~~ 241 (496)
+.+.+ ...+||.+|.|.|+.+..+... +...|+++|+++.-++.+++-+... .-..+.++..|+..+
T Consensus 67 l~~~~-~p~~vLiiG~G~G~~~~~~l~~--~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~ 143 (276)
T d1mjfa_ 67 MLAHP-KPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEF 143 (276)
T ss_dssp HHHSS-CCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHH
T ss_pred hhcCC-CCceEEEecCCchHHHHHHHHh--CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHH
Confidence 33443 4579999999999988776542 3358999999999999988755321 124589999999877
Q ss_pred ccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 242 ~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
-.. ..+||+|++|++.. .|.. .. .. ..+.+..+.+.| +|||.+|.-
T Consensus 144 l~~--~~~yDvIi~D~~~~-~~~~----~~--L~-----------t~eF~~~~~~~L----~~~Gv~v~q 189 (276)
T d1mjfa_ 144 IKN--NRGFDVIIADSTDP-VGPA----KV--LF-----------SEEFYRYVYDAL----NNPGIYVTQ 189 (276)
T ss_dssp HHH--CCCEEEEEEECCCC-C-----------TT-----------SHHHHHHHHHHE----EEEEEEEEE
T ss_pred Hhc--cCCCCEEEEeCCCC-CCCc----cc--cc-----------CHHHHHhhHhhc----CCCceEEEe
Confidence 543 37899999999852 2210 00 01 133455555655 999998753
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.26 E-value=0.00051 Score=65.78 Aligned_cols=132 Identities=16% Similarity=0.087 Sum_probs=87.4
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc-CC---CeEEEEecCCCCCccccCC
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-GV---TNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~-g~---~nv~v~~~D~~~~~~~~~~ 247 (496)
+++.+ ...+||-+|.|.|+.+..+... .+...|+++|+++.-++.++..+... +. .++.++..|++.+-... .
T Consensus 70 l~~~~-~p~~vLiiGgG~G~~~~~~l~~-~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~-~ 146 (274)
T d1iy9a_ 70 LFTHP-NPEHVLVVGGGDGGVIREILKH-PSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS-E 146 (274)
T ss_dssp HHHSS-SCCEEEEESCTTCHHHHHHTTC-TTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC-C
T ss_pred hhccC-CcceEEecCCCCcHHHHHHHhc-CCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhc-C
Confidence 33344 4469999999999988776654 23469999999999999998876432 22 46889999998875433 3
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHH
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~ 327 (496)
.+||+|++|++... |. +... .+ ++.+..+.+.| +|||.+|.-+- ++.-+...+..+
T Consensus 147 ~~yDvIi~D~~~p~-~~----~~~L--~t-----------~eFy~~~~~~L----~~~Gv~v~q~~--s~~~~~~~~~~i 202 (274)
T d1iy9a_ 147 NQYDVIMVDSTEPV-GP----AVNL--FT-----------KGFYAGIAKAL----KEDGIFVAQTD--NPWFTPELITNV 202 (274)
T ss_dssp SCEEEEEESCSSCC-SC----CCCC--ST-----------THHHHHHHHHE----EEEEEEEEECC--CTTTCHHHHHHH
T ss_pred CCCCEEEEcCCCCC-Cc----chhh--cc-----------HHHHHHHHhhc----CCCceEEEecC--CccccHHHHHHH
Confidence 68999999998632 21 1101 11 23455555555 99999886432 334455555555
Q ss_pred HHh
Q 010971 328 LKK 330 (496)
Q Consensus 328 L~~ 330 (496)
++.
T Consensus 203 ~~t 205 (274)
T d1iy9a_ 203 QRD 205 (274)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.18 E-value=0.0016 Score=56.58 Aligned_cols=105 Identities=18% Similarity=0.223 Sum_probs=67.1
Q ss_pred HhcCCCCCCeEeeccCCCchH-HHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc------c
Q 010971 172 MALAPQEKERVIDMAAAPGGK-TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK------V 244 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgK-T~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~------~ 244 (496)
....+++|++||-+|+|+-|. +++++..++ ..|+++|.++.|++.+++ +|...+.+.......... .
T Consensus 20 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G--a~vi~v~~~~~r~~~a~~----~ga~~~~~~~~~~~~~~~~~~~~~~ 93 (170)
T d1e3ja2 20 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKN----CGADVTLVVDPAKEEESSIIERIRS 93 (170)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH----TTCSEEEECCTTTSCHHHHHHHHHH
T ss_pred HHhCCCCCCEEEEEcccccchhhHhhHhhhc--ccccccchHHHHHHHHHH----cCCcEEEeccccccccchhhhhhhc
Confidence 345689999999998886443 345555543 589999999999876654 677654333222111110 0
Q ss_pred cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 245 ~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.....||+|+- |+|.. ..+..+++++ ++||++++..+.
T Consensus 94 ~~g~g~D~vid---~~g~~-------------------------~~~~~a~~~~----~~~G~iv~~G~~ 131 (170)
T d1e3ja2 94 AIGDLPNVTID---CSGNE-------------------------KCITIGINIT----RTGGTLMLVGMG 131 (170)
T ss_dssp HSSSCCSEEEE---CSCCH-------------------------HHHHHHHHHS----CTTCEEEECSCC
T ss_pred ccccCCceeee---cCCCh-------------------------HHHHHHHHHH----hcCCceEEEecC
Confidence 11357999875 44431 2367788886 999999886543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.17 E-value=0.00077 Score=59.07 Aligned_cols=104 Identities=18% Similarity=0.214 Sum_probs=69.6
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc------c
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV------L 245 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~------~ 245 (496)
...++++|+.||=+||||.|....+.....+...|+++|.++.|++.+ +++|.+.+..... ...... .
T Consensus 20 ~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a----~~~Ga~~~~~~~~--~~~~~~~~~~~~~ 93 (171)
T d1pl8a2 20 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKA----KEIGADLVLQISK--ESPQEIARKVEGQ 93 (171)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH----HHTTCSEEEECSS--CCHHHHHHHHHHH
T ss_pred HHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHH----HHhCCcccccccc--ccccccccccccc
Confidence 445789999999999988776654433333445899999999999865 4578875443222 221110 0
Q ss_pred CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 246 ~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
....||+|+- |+|.. ..+..+++++ ++||++++...
T Consensus 94 ~g~g~Dvvid---~~G~~-------------------------~~~~~a~~~~----~~gG~iv~~G~ 129 (171)
T d1pl8a2 94 LGCKPEVTIE---CTGAE-------------------------ASIQAGIYAT----RSGGTLVLVGL 129 (171)
T ss_dssp HTSCCSEEEE---CSCCH-------------------------HHHHHHHHHS----CTTCEEEECSC
T ss_pred CCCCceEEEe---ccCCc-------------------------hhHHHHHHHh----cCCCEEEEEec
Confidence 1257999886 55542 2477788887 99999988653
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.12 E-value=0.0011 Score=59.81 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=71.4
Q ss_pred HHhcCCCCCCeEeeccCCCch-HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc----ccc
Q 010971 171 VMALAPQEKERVIDMAAAPGG-KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVL 245 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGg-KT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~----~~~ 245 (496)
+...++++|++||.+||||.| .++.+|.++ +.+.|+++|.++.|++.+ +++|... +++.....+. +..
T Consensus 18 ~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~~~rl~~a----~~~Ga~~--~~~~~~~~~~~~i~~~t 90 (195)
T d1kola2 18 AVTAGVGPGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHA----KAQGFEI--ADLSLDTPLHEQIAALL 90 (195)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHH----HHTTCEE--EETTSSSCHHHHHHHHH
T ss_pred HHHhCCCCCCEEEEECcCHHHHHHHHHHHhh-cccceeeecccchhhHhh----hhccccE--EEeCCCcCHHHHHHHHh
Confidence 455678999999999999955 555566555 456999999999999765 4667643 3333222221 111
Q ss_pred CCCCcCEEEECC--CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 246 GLNTVDRVLLDA--PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 246 ~~~~fD~VLlDa--PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
....+|+|+-.. ||++.....- ...-+ ...|..+++++ +|||++++..
T Consensus 91 ~g~g~D~vid~vG~~~~~~~~~~~----~~~~~-----------~~~l~~~~~~~----r~gG~v~~~G 140 (195)
T d1kola2 91 GEPEVDCAVDAVGFEARGHGHEGA----KHEAP-----------ATVLNSLMQVT----RVAGKIGIPG 140 (195)
T ss_dssp SSSCEEEEEECCCTTCBCSSTTGG----GSBCT-----------THHHHHHHHHE----EEEEEEEECS
T ss_pred CCCCcEEEEECccccccCCcccce----eecCc-----------HHHHHHHHHHH----hcCCEEEEee
Confidence 335799988421 2222211110 00001 12478888887 9999998754
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.11 E-value=0.00047 Score=61.18 Aligned_cols=100 Identities=18% Similarity=0.214 Sum_probs=66.2
Q ss_pred cCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC-------cccc
Q 010971 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-------PKVL 245 (496)
Q Consensus 174 L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~-------~~~~ 245 (496)
..+++|++||-+|||| |..++++|..++ ...|+++|.++.|++.+ +++|.+.+ ++..-..+ .+..
T Consensus 24 ~~~~~G~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~~~~~~~~~a----~~lGa~~v--i~~~~~~~~~~~~~i~~~~ 96 (182)
T d1vj0a2 24 PESFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLA----EEIGADLT--LNRRETSVEERRKAIMDIT 96 (182)
T ss_dssp SSCCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHH----HHTTCSEE--EETTTSCHHHHHHHHHHHT
T ss_pred hCCCCCCEEEEECCCccchhheecccccc-ccccccccccccccccc----ccccceEE--EeccccchHHHHHHHHHhh
Confidence 3578999999998875 555566666653 24899999999999765 45787653 22222221 1111
Q ss_pred CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 246 ~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
...+||+||- |+|.. ..+..+++++ ++||++|+.-
T Consensus 97 ~~~g~Dvvid---~vG~~-------------------------~~~~~a~~~l----~~~G~iv~~G 131 (182)
T d1vj0a2 97 HGRGADFILE---ATGDS-------------------------RALLEGSELL----RRGGFYSVAG 131 (182)
T ss_dssp TTSCEEEEEE---CSSCT-------------------------THHHHHHHHE----EEEEEEEECC
T ss_pred CCCCceEEee---cCCch-------------------------hHHHHHHHHh----cCCCEEEEEe
Confidence 2356999985 55542 1367778887 9999998754
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.04 E-value=0.0022 Score=60.00 Aligned_cols=101 Identities=10% Similarity=0.062 Sum_probs=72.8
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g-~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
....+|||+|+|+|..+..+++..++ ..++..|+-. . ++..+ ..++.++.+|..+- . ...|.|++
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~-l~~~v~Dlp~-v-------i~~~~~~~ri~~~~gd~~~~---~--p~~D~~~l 145 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPL-IKGINFDLPQ-V-------IENAPPLSGIEHVGGDMFAS---V--PQGDAMIL 145 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHH-H-------HTTCCCCTTEEEEECCTTTC---C--CCEEEEEE
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCC-CeEEEecchh-h-------hhccCCCCCeEEecCCcccc---c--ccceEEEE
Confidence 45689999999999999999999865 6889999732 2 23333 35688999997542 2 24699887
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
..+...|+.++. ..||.++.+.+ +|||+|+.....+
T Consensus 146 -------------~~vLh~~~de~~-------~~iL~~~~~aL----~pgg~llI~e~v~ 181 (244)
T d1fp1d2 146 -------------KAVCHNWSDEKC-------IEFLSNCHKAL----SPNGKVIIVEFIL 181 (244)
T ss_dssp -------------ESSGGGSCHHHH-------HHHHHHHHHHE----EEEEEEEEEEEEE
T ss_pred -------------ehhhhhCCHHHH-------HHHHHHHHHHc----CCCcEEEEEEEEe
Confidence 123445665554 45788888887 9999998876654
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=97.00 E-value=0.0014 Score=62.06 Aligned_cols=129 Identities=15% Similarity=0.160 Sum_probs=80.1
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCCC
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPC 259 (496)
.+|||++||.||.++-+-+. +--.++|+|+++..++..+.|. .+ .++..|...+.... ...+|+++.-+||
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a--G~~~~~a~e~d~~a~~~~~~N~-----~~-~~~~~Di~~~~~~~-~~~~dll~~g~PC 71 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH-----SA-KLIKGDISKISSDE-FPKCDGIIGGPPC 71 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH--TCEEEEEEECCHHHHHHHHHHC-----CS-EEEESCTTTSCGGG-SCCCSEEEECCCC
T ss_pred CeEEEeCcCcCHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC-----CC-CCccCChhhCCHhH-cccccEEeecccc
Confidence 37999999999998876554 2236789999999999888874 22 34668888874322 2579999999999
Q ss_pred CCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHh
Q 010971 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330 (496)
Q Consensus 260 Sg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~ 330 (496)
.+.-...+.... ..+. .. +...+++ .+..+ +|--.++=-.-.+....+......++..
T Consensus 72 q~fS~ag~~~g~---~d~r--~~---l~~~~~~-~i~~~----~Pk~~~lENV~~~~~~~~~~~~~~~l~~ 129 (324)
T d1dcta_ 72 QSWSEGGSLRGI---DDPR--GK---LFYEYIR-ILKQK----KPIFFLAENVKGMMAQRHNKAVQEFIQE 129 (324)
T ss_dssp TTTSSSSCCCCS---SSHH--HH---HHHHHHH-HHHHH----CCSEEEEEEEGGGGSGGGHHHHHHHHHH
T ss_pred cccccccccccc---cccc--cc---hHHHHHH-HHHhh----CCceeeccccccccccccchhhHHHHhH
Confidence 988766544221 1111 11 1122222 23333 8854443333334444556666666654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.93 E-value=0.00052 Score=60.61 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=68.9
Q ss_pred HhcCCCCCCeEeeccCCCchHH-HHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---cCC
Q 010971 172 MALAPQEKERVIDMAAAPGGKT-TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LGL 247 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT-~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~~~ 247 (496)
..+++++|++||=++||+-|.. ++++..++ ...|++.|.++.|++.++ ++|...+ ++.+..++.+. +.+
T Consensus 22 ~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~----~~Ga~~~--i~~~~~~~~~~i~~~t~ 94 (174)
T d1f8fa2 22 NALKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAK----QLGATHV--INSKTQDPVAAIKEITD 94 (174)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHH----HHTCSEE--EETTTSCHHHHHHHHTT
T ss_pred HhhCCCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHHHHHH----HcCCeEE--EeCCCcCHHHHHHHHcC
Confidence 3457899999999988775544 34555554 358899999999988764 4687654 34443333211 123
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
++||.|+- |+|.+ ..+..+++++ +|||++++..
T Consensus 95 gg~D~vid---~~G~~-------------------------~~~~~~~~~~----~~~G~i~~~G 127 (174)
T d1f8fa2 95 GGVNFALE---STGSP-------------------------EILKQGVDAL----GILGKIAVVG 127 (174)
T ss_dssp SCEEEEEE---CSCCH-------------------------HHHHHHHHTE----EEEEEEEECC
T ss_pred CCCcEEEE---cCCcH-------------------------HHHHHHHhcc----cCceEEEEEe
Confidence 57999987 56543 2467788887 9999998753
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.90 E-value=0.00032 Score=67.38 Aligned_cols=84 Identities=14% Similarity=0.201 Sum_probs=52.2
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc-ccCCCCcCEEEECCC
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK-VLGLNTVDRVLLDAP 258 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~-~~~~~~fD~VLlDaP 258 (496)
.+|+|||||.||.++.+-..--+.-.|.|+|+++..++..+.|. .+..+.+.|...+.. .+....+|+++.-+|
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-----~~~~~~~~di~~~~~~~~~~~~~Dll~ggpP 77 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-----PHTQLLAKTIEGITLEEFDRLSFDMILMSPP 77 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----TTSCEECSCGGGCCHHHHHHHCCSEEEECCC
T ss_pred CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-----CCCCcccCchhhCCHhHcCCCCccEEEeecc
Confidence 57999999999998776544111124789999999999988874 234455677665521 121236999999999
Q ss_pred CCCCCcccCC
Q 010971 259 CSGTGVISKD 268 (496)
Q Consensus 259 CSg~G~i~r~ 268 (496)
|.+.-+..+.
T Consensus 78 Cq~fS~ag~~ 87 (343)
T d1g55a_ 78 CQPFTRIGRQ 87 (343)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 9988766543
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=96.89 E-value=0.001 Score=59.97 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=32.3
Q ss_pred CCCCeEeeccCCCchHHH----HHHHHcCC---CcEEEEEeCCHHHHHHHHH
Q 010971 177 QEKERVIDMAAAPGGKTT----YIAALMKN---TGLIYANEMKASRLKSLTA 221 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~----~lA~l~~~---~g~V~A~D~s~~rl~~l~~ 221 (496)
.+.-+||++|||+|-=.- .+...+.. .-.|+|.|+++..++.++.
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~ 74 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS 74 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc
Confidence 344599999999998543 33333322 2379999999999988874
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.83 E-value=0.00048 Score=60.43 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=52.0
Q ss_pred hcCCCCCCeEeeccCCCc-hHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcC
Q 010971 173 ALAPQEKERVIDMAAAPG-GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpG-gKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD 251 (496)
...+++|++||-+++|+- ..+++++..++ ..|+++|.++.|++.+ +++|.+.+.....+. .+.... .+.||
T Consensus 22 ~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~a----~~lGa~~~i~~~~~~-~~~~~~-~~~~d 93 (168)
T d1piwa2 22 RNGCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDA----MKMGADHYIATLEEG-DWGEKY-FDTFD 93 (168)
T ss_dssp HTTCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHH----HHHTCSEEEEGGGTS-CHHHHS-CSCEE
T ss_pred HhCcCCCCEEEEECCCCcchhHHHHhhhcc--ccccccccchhHHHHh----hccCCcEEeeccchH-HHHHhh-hcccc
Confidence 357899999999988743 34445555553 5899999999998764 568887544322232 222222 36799
Q ss_pred EEEECCCCCCCC
Q 010971 252 RVLLDAPCSGTG 263 (496)
Q Consensus 252 ~VLlDaPCSg~G 263 (496)
.|+. |.+.+
T Consensus 94 ~vi~---~~~~~ 102 (168)
T d1piwa2 94 LIVV---CASSL 102 (168)
T ss_dssp EEEE---CCSCS
T ss_pred eEEE---EecCC
Confidence 9886 54443
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=96.79 E-value=0.0014 Score=62.74 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=60.7
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
.+.+|||+|||.||.++.+-+. +--.|.|+|+++..++..+.|... ..+.|.+.+.... ...+|+|+.-+
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a--G~~~v~a~e~d~~a~~~~~~N~~~-------~~~~Di~~~~~~~-~~~~Dll~ggp 79 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGE-------KPEGDITQVNEKT-IPDHDILCAGF 79 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSC-------CCBSCGGGSCGGG-SCCCSEEEEEC
T ss_pred CCCeEEEECccccHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHCCC-------CCcCchhcCchhh-cceeeeeeccc
Confidence 5789999999999999876543 223788999999999999988632 1246776663321 25799999999
Q ss_pred CCCCCCcccCC
Q 010971 258 PCSGTGVISKD 268 (496)
Q Consensus 258 PCSg~G~i~r~ 268 (496)
||-+.-...+.
T Consensus 80 PCq~fS~ag~~ 90 (327)
T d2c7pa1 80 PCQAFSISGKQ 90 (327)
T ss_dssp CCTTTCTTSCC
T ss_pred ccchhhhhhhh
Confidence 99887665543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.72 E-value=0.0013 Score=58.26 Aligned_cols=102 Identities=23% Similarity=0.263 Sum_probs=68.3
Q ss_pred HHhcCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc----ccc
Q 010971 171 VMALAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVL 245 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~----~~~ 245 (496)
+...++++|++||=++||+ |..+++++..++ ...|+++|.++.|++.++ ++|...+ ++.....+. +..
T Consensus 20 ~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~r~~~a~----~lGa~~~--i~~~~~~~~~~v~~~t 92 (174)
T d1jqba2 20 AELADIEMGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPICVEAAK----FYGATDI--LNYKNGHIEDQVMKLT 92 (174)
T ss_dssp HHHTTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHHHHHHHH----HHTCSEE--ECGGGSCHHHHHHHHT
T ss_pred HHHhCCCCCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhhhHHHHH----hhCcccc--ccccchhHHHHHHHHh
Confidence 4456789999999998877 555566666543 347999999999988774 6787543 333222221 111
Q ss_pred CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 246 ~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
....||+||- |+|.. ..+..+++++ +|||+++..
T Consensus 93 ~g~G~D~vid---~~g~~-------------------------~~~~~a~~~~----~~~G~iv~~ 126 (174)
T d1jqba2 93 NGKGVDRVIM---AGGGS-------------------------ETLSQAVKMV----KPGGIISNI 126 (174)
T ss_dssp TTSCEEEEEE---CSSCT-------------------------THHHHHHHHE----EEEEEEEEC
T ss_pred hccCcceEEE---ccCCH-------------------------HHHHHHHHHH----hcCCEEEEE
Confidence 2356999876 44432 1367788887 999999873
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.67 E-value=0.00078 Score=62.97 Aligned_cols=97 Identities=14% Similarity=0.166 Sum_probs=64.4
Q ss_pred cccEEEeCCcchhHHH-hcCCCCCCeEeeccCCCchHHHHHHHHc---CCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEE
Q 010971 157 AGFYMLQSASSFLPVM-ALAPQEKERVIDMAAAPGGKTTYIAALM---KNTGLIYANEMKASRLKSLTANLHRMGVTNTI 232 (496)
Q Consensus 157 ~G~~~iQd~sS~l~v~-~L~~~~g~~VLDmcAgpGgKT~~lA~l~---~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~ 232 (496)
.|.=++|.+.-+.+-. ++.-....+||++|++.|+.++.++.++ +..|.|+++|++..+.... .....++.
T Consensus 58 ~G~p~~k~p~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-----~~~~~~I~ 132 (232)
T d2bm8a1 58 RGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-----ASDMENIT 132 (232)
T ss_dssp TTEECCSCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-----GGGCTTEE
T ss_pred cceecccCHHHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-----hcccccee
Confidence 3666677765544322 2221123589999999999998888765 4568999999987654321 12246789
Q ss_pred EEecCCCCCcc--ccCCCCcCEEEECCC
Q 010971 233 VCNYDGNELPK--VLGLNTVDRVLLDAP 258 (496)
Q Consensus 233 v~~~D~~~~~~--~~~~~~fD~VLlDaP 258 (496)
+..+|...... .+....||.|++|.-
T Consensus 133 ~i~gDs~~~~~~~~l~~~~~dlIfID~~ 160 (232)
T d2bm8a1 133 LHQGDCSDLTTFEHLREMAHPLIFIDNA 160 (232)
T ss_dssp EEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred eeecccccHHHHHHHHhcCCCEEEEcCC
Confidence 99998765422 233457999999973
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.65 E-value=0.0032 Score=55.68 Aligned_cols=103 Identities=18% Similarity=0.178 Sum_probs=69.2
Q ss_pred HhcCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEE-ecCCCC--CccccCC
Q 010971 172 MALAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVC-NYDGNE--LPKVLGL 247 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~-~~D~~~--~~~~~~~ 247 (496)
....+++|++||=++||+ |..+++++..++ ...|++.|.++.|++. ++++|...+... ..|... .......
T Consensus 22 ~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~----a~~~Ga~~~i~~~~~~~~~~~~~~~~~~ 96 (174)
T d1e3ia2 22 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPK----AKALGATDCLNPRELDKPVQDVITELTA 96 (174)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHH----HHHTTCSEEECGGGCSSCHHHHHHHHHT
T ss_pred HhhCCCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHH----HHHhCCCcccCCccchhhhhhhHhhhhc
Confidence 345689999999999988 555566666664 4689999999999854 566888764321 112110 0111123
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC-cEEEEE
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG-GYIVYS 311 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpG-G~LVYS 311 (496)
..+|.||- |+|.. ..+..|++++ ++| |++|..
T Consensus 97 ~G~d~vie---~~G~~-------------------------~~~~~a~~~~----~~g~G~~v~v 129 (174)
T d1e3ia2 97 GGVDYSLD---CAGTA-------------------------QTLKAAVDCT----VLGWGSCTVV 129 (174)
T ss_dssp SCBSEEEE---SSCCH-------------------------HHHHHHHHTB----CTTTCEEEEC
T ss_pred CCCcEEEE---ecccc-------------------------hHHHHHHHHh----hcCCeEEEec
Confidence 68999986 77653 2478888887 886 999873
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.62 E-value=0.00051 Score=65.06 Aligned_cols=88 Identities=13% Similarity=0.084 Sum_probs=66.2
Q ss_pred HHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--C-
Q 010971 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--G- 246 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--~- 246 (496)
.+.++++.+++.||++|+|+|..|..|+.. ...|+|+|+|+..+..|+.... ...|+.++++|+..++... .
T Consensus 13 Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~--~~~~~~ii~~D~l~~~~~~~~~~ 87 (252)
T d1qyra_ 13 IVSAINPQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPF--LGPKLTIYQQDAMTFNFGELAEK 87 (252)
T ss_dssp HHHHHCCCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTT--TGGGEEEECSCGGGCCHHHHHHH
T ss_pred HHHhcCCCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhh--hccchhHHhhhhhhhcccccccc
Confidence 466778899999999999999999998875 3579999999998888876432 2357999999998763211 0
Q ss_pred CCCcCEEEECCCCCCC
Q 010971 247 LNTVDRVLLDAPCSGT 262 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~ 262 (496)
.+..-.|+-+-|++-+
T Consensus 88 ~~~~~~vvgNlPY~Is 103 (252)
T d1qyra_ 88 MGQPLRVFGNLPYNIS 103 (252)
T ss_dssp HTSCEEEEEECCTTTH
T ss_pred cCCCeEEEecchHHHH
Confidence 0223478899997644
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.48 E-value=0.012 Score=54.88 Aligned_cols=97 Identities=13% Similarity=0.133 Sum_probs=69.5
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
..+|||+|+|+|..+..+++..++ ..++..|... .++..+. .++.++.+|+..- . ..+|++++
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp~--------vi~~~~~~~rv~~~~gD~f~~---~--p~aD~~~l-- 144 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPK-LKCIVFDRPQ--------VVENLSGSNNLTYVGGDMFTS---I--PNADAVLL-- 144 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHH--------HHTTCCCBTTEEEEECCTTTC---C--CCCSEEEE--
T ss_pred ceEEEEecCCccHHHHHHHHhCCC-CeEEEecCHH--------HHHhCcccCceEEEecCcccC---C--CCCcEEEE--
Confidence 467999999999999999999875 6889999732 2334444 4699999998652 2 36899987
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC---cEEEEEeC
Q 010971 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG---GYIVYSTC 313 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpG---G~LVYSTC 313 (496)
-.+...|+.++. .+||.++.+.+ +|| |+|+...-
T Consensus 145 -----------~~vLHdw~d~~~-------~~iL~~~~~al----~pgg~~~~lli~e~ 181 (244)
T d1fp2a2 145 -----------KYILHNWTDKDC-------LRILKKCKEAV----TNDGKRGKVTIIDM 181 (244)
T ss_dssp -----------ESCGGGSCHHHH-------HHHHHHHHHHH----SGGGCCCEEEEEEC
T ss_pred -----------EeecccCChHHH-------HHHHHHHHHHc----CcccCCcEEEEEEe
Confidence 123344665553 56788888887 998 66666543
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.25 E-value=0.0088 Score=52.54 Aligned_cols=79 Identities=10% Similarity=-0.009 Sum_probs=52.0
Q ss_pred HhcCCCCCCeEeeccCCCchHHH-HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEE-EecCCCC--CccccCC
Q 010971 172 MALAPQEKERVIDMAAAPGGKTT-YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIV-CNYDGNE--LPKVLGL 247 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~-~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v-~~~D~~~--~~~~~~~ 247 (496)
....+++|++||=++||+.|... +++.+++ ...|+++|.++.|++.+ +.+|.+.+.- ...|... .......
T Consensus 21 ~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~~kl~~a----~~lGa~~~i~~~~~d~~~~~~~~~~~~ 95 (174)
T d1p0fa2 21 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKA----IELGATECLNPKDYDKPIYEVICEKTN 95 (174)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHH----HHTTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred HhhCCCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChHHHHHHH----HHcCCcEEEcCCCchhHHHHHHHHhcC
Confidence 34568999999999998877665 4555554 46899999999999766 4588875431 1122110 0111123
Q ss_pred CCcCEEEE
Q 010971 248 NTVDRVLL 255 (496)
Q Consensus 248 ~~fD~VLl 255 (496)
..+|.|+-
T Consensus 96 ~G~d~vid 103 (174)
T d1p0fa2 96 GGVDYAVE 103 (174)
T ss_dssp SCBSEEEE
T ss_pred CCCcEEEE
Confidence 57999987
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=96.18 E-value=0.0014 Score=61.79 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=61.4
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCC---------------------------------------CcEEEEEeCCHHHHH
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKN---------------------------------------TGLIYANEMKASRLK 217 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~---------------------------------------~g~V~A~D~s~~rl~ 217 (496)
..+..+||-|||+|...+..|.+..| ...|++.|+++..+.
T Consensus 49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~ 128 (249)
T d1o9ga_ 49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 128 (249)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence 44567999999999998876554311 124678888888888
Q ss_pred HH---HHHHHHcCCCe-EEEEecCCCCCccc---cCCCCcCEEEECCCC
Q 010971 218 SL---TANLHRMGVTN-TIVCNYDGNELPKV---LGLNTVDRVLLDAPC 259 (496)
Q Consensus 218 ~l---~~nl~r~g~~n-v~v~~~D~~~~~~~---~~~~~fD~VLlDaPC 259 (496)
.+ ++|+.+.|+.. +.+...|+...... ......++|++|||+
T Consensus 129 ~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPY 177 (249)
T d1o9ga_ 129 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPY 177 (249)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCG
T ss_pred HHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCc
Confidence 77 57999999976 78888888654321 123568999999996
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.12 E-value=0.007 Score=52.43 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=66.0
Q ss_pred HHhcCCCCCCeEeeccC-CCchH-HHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc----
Q 010971 171 VMALAPQEKERVIDMAA-APGGK-TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---- 244 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcA-gpGgK-T~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---- 244 (496)
+...++++|++||=+++ |+.|. +++++..++ ...|+++|.++.|++.++ ++|.+.+ ++.+..++.+.
T Consensus 20 l~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~~~~~~~~~----~~Ga~~~--i~~~~~~~~~~~~~~ 92 (170)
T d1jvba2 20 VRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAK----RAGADYV--INASMQDPLAEIRRI 92 (170)
T ss_dssp HHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHH----HHTCSEE--EETTTSCHHHHHHHH
T ss_pred HHHhCCCCCCEEEEEeccccceeeeeecccccc-cccccccccchhhHHHHH----HcCCcee--eccCCcCHHHHHHHH
Confidence 34457899999999995 55444 445556553 358999999999988775 4687643 33333332111
Q ss_pred cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 245 ~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.....||+|+- |+|.. ..+..++.++ +|||++|..
T Consensus 93 ~~~~~~d~vid---~~g~~-------------------------~~~~~a~~~l----~~~G~iv~~ 127 (170)
T d1jvba2 93 TESKGVDAVID---LNNSE-------------------------KTLSVYPKAL----AKQGKYVMV 127 (170)
T ss_dssp TTTSCEEEEEE---SCCCH-------------------------HHHTTGGGGE----EEEEEEEEC
T ss_pred hhcccchhhhc---ccccc-------------------------hHHHhhhhhc----ccCCEEEEe
Confidence 12356998876 55542 2355667776 999998753
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.11 E-value=0.0023 Score=56.00 Aligned_cols=99 Identities=12% Similarity=0.122 Sum_probs=66.1
Q ss_pred CCCCCCeEeeccCCCchHHH-HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc---cccCCCCc
Q 010971 175 APQEKERVIDMAAAPGGKTT-YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP---KVLGLNTV 250 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~-~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~---~~~~~~~f 250 (496)
.++||+.||=.|||+.|... +++..++ ...|++.|.++.|++.++ ++|...+ ++.+...+. +......|
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~----~~ga~~~--i~~~~~~~~~~~~~~~~~g~ 101 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAE----RLGADHV--VDARRDPVKQVMELTRGRGV 101 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHH----HTTCSEE--EETTSCHHHHHHHHTTTCCE
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHh----hccccee--ecCcccHHHHHHHhhCCCCc
Confidence 36899999999998876654 5555554 368999999999987665 5676643 333322211 11123579
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
|.|+- |+|.. ..+..+++++ ++||++|...
T Consensus 102 d~vid---~~g~~-------------------------~~~~~a~~~l----~~~G~iv~~G 131 (172)
T d1h2ba2 102 NVAMD---FVGSQ-------------------------ATVDYTPYLL----GRMGRLIIVG 131 (172)
T ss_dssp EEEEE---SSCCH-------------------------HHHHHGGGGE----EEEEEEEECC
T ss_pred eEEEE---ecCcc-------------------------hHHHHHHHHH----hCCCEEEEEe
Confidence 99986 44432 2367778876 9999999754
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.97 E-value=0.012 Score=50.96 Aligned_cols=102 Identities=12% Similarity=0.092 Sum_probs=64.4
Q ss_pred hcCCCCCCeEeeccCCCchH-HHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc---cccCCC
Q 010971 173 ALAPQEKERVIDMAAAPGGK-TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP---KVLGLN 248 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgK-T~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~---~~~~~~ 248 (496)
..+++||++||=.+||+.|. +++++..++ ...|++.|.++.|++. ++++|.+.++....+..... ......
T Consensus 23 ~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~----ak~lGa~~~i~~~~~~~~~~~~~~~~~~~ 97 (176)
T d2fzwa2 23 TAKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFAR----AKEFGATECINPQDFSKPIQEVLIEMTDG 97 (176)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHH----HHHHTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred hhCCCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHH----HHHhCCcEEEeCCchhhHHHHHHHHHcCC
Confidence 45789999999988775444 345666654 3689999999999765 45788876432211111111 111236
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.+|.|+- |+|.. ..+..+..++ ++||.+++.
T Consensus 98 g~D~vid---~~G~~-------------------------~~~~~~~~~~----~~g~~~~~v 128 (176)
T d2fzwa2 98 GVDYSFE---CIGNV-------------------------KVMRAALEAC----HKGWGVSVV 128 (176)
T ss_dssp CBSEEEE---CSCCH-------------------------HHHHHHHHTB----CTTTCEEEE
T ss_pred CCcEeee---cCCCH-------------------------HHHHHHHHhh----cCCceeEEE
Confidence 7999987 44431 2456677775 888887764
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.92 E-value=0.024 Score=49.21 Aligned_cols=78 Identities=9% Similarity=0.068 Sum_probs=50.3
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC----ccccCCC
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL----PKVLGLN 248 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~----~~~~~~~ 248 (496)
...+++|++||=.+||++|-+..+.....+...|+++|.++.|++.+ .++|...+.. ..+..+. ......+
T Consensus 23 ~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a----~~~Ga~~~i~-~~~~~~~~~~~~~~~~~~ 97 (176)
T d2jhfa2 23 VAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKA----KEVGATECVN-PQDYKKPIQEVLTEMSNG 97 (176)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH----HHTTCSEEEC-GGGCSSCHHHHHHHHTTS
T ss_pred hhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHH----HHhCCeeEEe-cCCchhHHHHHHHHHhcC
Confidence 34689999999999987765543333333446999999999998765 5567765422 2222221 1112346
Q ss_pred CcCEEEE
Q 010971 249 TVDRVLL 255 (496)
Q Consensus 249 ~fD~VLl 255 (496)
.+|+|+-
T Consensus 98 G~D~vid 104 (176)
T d2jhfa2 98 GVDFSFE 104 (176)
T ss_dssp CBSEEEE
T ss_pred CCCEEEe
Confidence 8999887
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.88 E-value=0.0056 Score=52.67 Aligned_cols=102 Identities=15% Similarity=0.129 Sum_probs=65.2
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--CCCC
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--GLNT 249 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--~~~~ 249 (496)
....++||++||=.+|||-|..........+ ..|++.|.++.|++.+ +.+|...+. +..-.++.... ....
T Consensus 21 ~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g-~~v~~~~~~~~r~~~~----k~~Ga~~~~--~~~~~~~~~~~~~~~~~ 93 (168)
T d1rjwa2 21 KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMG-LNVVAVDIGDEKLELA----KELGADLVV--NPLKEDAAKFMKEKVGG 93 (168)
T ss_dssp HHHTCCTTCEEEEECCSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHH----HHTTCSEEE--CTTTSCHHHHHHHHHSS
T ss_pred HHhCCCCCCEEEEeecccchhhhhHHHhcCC-CeEeccCCCHHHhhhh----hhcCcceec--ccccchhhhhcccccCC
Confidence 3457889999999999887766543333333 5899999999998765 557876442 22112221110 0135
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+|.++.|++ .+ ..+..+++++ +|||++++.-
T Consensus 94 ~~~~v~~~~---~~-------------------------~~~~~a~~~l----~~~G~i~~~g 124 (168)
T d1rjwa2 94 VHAAVVTAV---SK-------------------------PAFQSAYNSI----RRGGACVLVG 124 (168)
T ss_dssp EEEEEESSC---CH-------------------------HHHHHHHHHE----EEEEEEEECC
T ss_pred CceEEeecC---CH-------------------------HHHHHHHHHh----ccCCceEecc
Confidence 666777654 11 2477888887 9999998753
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.82 E-value=0.015 Score=51.14 Aligned_cols=79 Identities=10% Similarity=0.077 Sum_probs=51.3
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC----ccccCC
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL----PKVLGL 247 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~----~~~~~~ 247 (496)
....+++|+.||=++||+.|........+.+...|+++|.+++|++.+ +.+|.+.+.- ..|.... ......
T Consensus 23 ~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~A----k~~GA~~~in-~~~~~~~~~~~~~~~~g 97 (176)
T d1d1ta2 23 KTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKA----MAVGATECIS-PKDSTKPISEVLSEMTG 97 (176)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH----HHHTCSEEEC-GGGCSSCHHHHHHHHHT
T ss_pred HhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHH----HhcCCcEEEC-ccccchHHHHHHHHhcc
Confidence 345689999999999988776654333333446999999999999855 5577765321 1222221 111123
Q ss_pred CCcCEEEE
Q 010971 248 NTVDRVLL 255 (496)
Q Consensus 248 ~~fD~VLl 255 (496)
.++|.|+.
T Consensus 98 ~G~d~vi~ 105 (176)
T d1d1ta2 98 NNVGYTFE 105 (176)
T ss_dssp SCCCEEEE
T ss_pred ccceEEEE
Confidence 68999987
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=95.80 E-value=0.029 Score=51.80 Aligned_cols=102 Identities=10% Similarity=0.096 Sum_probs=68.8
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
....+|||+|+|+|..+..|++..++ .+++..|+-.. ++.... .++.++.+|...- . ...|.+++
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp~v--------i~~~~~~~r~~~~~~d~~~~---~--P~ad~~~l 145 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPT-IKGINFDLPHV--------IEDAPSYPGVEHVGGDMFVS---I--PKADAVFM 145 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTT-SEEEEEECTTT--------TTTCCCCTTEEEEECCTTTC---C--CCCSCEEC
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCC-CeEEEcccHHh--------hhhcccCCceEEeccccccc---C--CCcceEEE
Confidence 33578999999999999999999865 68899998542 222222 4588888887542 2 12455554
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
= .+...|+.++. ..||.++.+.+ +|||.++...+.+.
T Consensus 146 ~-------------~vlh~~~d~~~-------~~iL~~~~~al----~pgg~~li~d~~~~ 182 (243)
T d1kyza2 146 K-------------WICHDWSDEHC-------LKFLKNCYEAL----PDNGKVIVAECILP 182 (243)
T ss_dssp S-------------SSSTTSCHHHH-------HHHHHHHHHHC----CSSSCEEEEECEEC
T ss_pred E-------------EEeecCCHHHH-------HHHHHHHHHhc----CCCceEEEEEEEec
Confidence 0 12233554443 45788888886 99999988776554
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.70 E-value=0.018 Score=49.98 Aligned_cols=97 Identities=14% Similarity=0.128 Sum_probs=62.9
Q ss_pred cCCCCCCeEeeccC--CCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc----ccCC
Q 010971 174 LAPQEKERVIDMAA--APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK----VLGL 247 (496)
Q Consensus 174 L~~~~g~~VLDmcA--gpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~----~~~~ 247 (496)
..+++|++||-.+| +-|..++++|..++ ..|++.+.++++++.+ +++|.+.+. ++.-.++.+ ....
T Consensus 24 ~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~~~~~~~~~----~~~Ga~~vi--~~~~~~~~~~i~~~t~~ 95 (174)
T d1yb5a2 24 ACVKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIV----LQNGAHEVF--NHREVNYIDKIKKYVGE 95 (174)
T ss_dssp SCCCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHH----HHTTCSEEE--ETTSTTHHHHHHHHHCT
T ss_pred hCCCCCCEEEEEeccccccccccccccccC--cccccccccccccccc----cccCccccc--ccccccHHHHhhhhhcc
Confidence 46889999999886 33455566776664 5789998898887655 468887643 333223321 1234
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
..||+|+- |+| | ..+..+++++ +|||++|..
T Consensus 96 ~g~d~v~d---~~g-~-------------------------~~~~~~~~~l----~~~G~iv~~ 126 (174)
T d1yb5a2 96 KGIDIIIE---MLA-N-------------------------VNLSKDLSLL----SHGGRVIVV 126 (174)
T ss_dssp TCEEEEEE---SCH-H-------------------------HHHHHHHHHE----EEEEEEEEC
T ss_pred CCceEEee---ccc-H-------------------------HHHHHHHhcc----CCCCEEEEE
Confidence 67998875 222 1 1366777876 999999864
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.60 E-value=0.008 Score=51.83 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=63.6
Q ss_pred HhcCCCCCCeEeeccCCCchHH-HHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--CCC
Q 010971 172 MALAPQEKERVIDMAAAPGGKT-TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--GLN 248 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT-~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--~~~ 248 (496)
....+++|++||=++||+=|.. ++++..+ + ..|+++|.++.|++.+ +++|.+.+ ++.+..++.... ...
T Consensus 21 ~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~-G-~~Vi~~~~~~~~~~~a----~~~Ga~~~--i~~~~~~~~~~~~~~~~ 92 (166)
T d1llua2 21 KQTNARPGQWVAISGIGGLGHVAVQYARAM-G-LHVAAIDIDDAKLELA----RKLGASLT--VNARQEDPVEAIQRDIG 92 (166)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHH----HHTTCSEE--EETTTSCHHHHHHHHHS
T ss_pred HHhCCCCCCEEEEeeccccHHHHHHHHHHc-C-CccceecchhhHHHhh----hccCcccc--ccccchhHHHHHHHhhc
Confidence 4467899999999988775444 3455554 3 6899999999999765 46887654 333322221111 013
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
.+|.++. |++.+ ..+..+++++ +|||++|...
T Consensus 93 g~~~~i~---~~~~~-------------------------~~~~~~~~~l----~~~G~iv~~G 124 (166)
T d1llua2 93 GAHGVLV---TAVSN-------------------------SAFGQAIGMA----RRGGTIALVG 124 (166)
T ss_dssp SEEEEEE---CCSCH-------------------------HHHHHHHTTE----EEEEEEEECC
T ss_pred CCccccc---ccccc-------------------------hHHHHHHHHh----cCCcEEEEEE
Confidence 4566655 33332 1366788886 9999998743
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=95.57 E-value=0.023 Score=49.15 Aligned_cols=77 Identities=13% Similarity=0.118 Sum_probs=51.7
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCC-CC----ccccCC
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN-EL----PKVLGL 247 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~-~~----~~~~~~ 247 (496)
...+++|++||=+++|++|-...+.........|+++|.++.|++. ++.+|.+.++ +.+-. .. -.....
T Consensus 23 ~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~----a~~~GAd~~i--n~~~~~~~~~~~~~~~~~ 96 (175)
T d1cdoa2 23 TAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEK----AKVFGATDFV--NPNDHSEPISQVLSKMTN 96 (175)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHH----HHHTTCCEEE--CGGGCSSCHHHHHHHHHT
T ss_pred hhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHH----HHHcCCcEEE--cCCCcchhHHHHHHhhcc
Confidence 3468999999999999977665544444455799999999999866 4568876543 32211 11 111123
Q ss_pred CCcCEEEE
Q 010971 248 NTVDRVLL 255 (496)
Q Consensus 248 ~~fD~VLl 255 (496)
..+|.|+-
T Consensus 97 ~G~d~vid 104 (175)
T d1cdoa2 97 GGVDFSLE 104 (175)
T ss_dssp SCBSEEEE
T ss_pred CCcceeee
Confidence 57999986
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.46 E-value=0.0089 Score=51.82 Aligned_cols=100 Identities=12% Similarity=0.078 Sum_probs=63.2
Q ss_pred HhcCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 172 MALAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
...++++|++||=.+||+ |..++++|..++ ..++++|.+..+++. ++++|.+.+ ++..-..... .....|
T Consensus 24 ~~~~~~~G~~VlI~GaG~vG~~a~qlak~~G--a~~i~~~~~~~~~~~----a~~lGad~~--i~~~~~~~~~-~~~~~~ 94 (168)
T d1uufa2 24 RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREA----AKALGADEV--VNSRNADEMA-AHLKSF 94 (168)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHH----HHHHTCSEE--EETTCHHHHH-TTTTCE
T ss_pred HHhCCCCCCEEEEeccchHHHHHHHHhhccc--ccchhhccchhHHHH----HhccCCcEE--EECchhhHHH-HhcCCC
Confidence 445789999999988754 334445555542 477789999988764 456888654 2322211111 122579
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
|.|+- |+|... .+..++.++ ++||++|...
T Consensus 95 D~vid---~~g~~~-------------------------~~~~~~~~l----~~~G~iv~~G 124 (168)
T d1uufa2 95 DFILN---TVAAPH-------------------------NLDDFTTLL----KRDGTMTLVG 124 (168)
T ss_dssp EEEEE---CCSSCC-------------------------CHHHHHTTE----EEEEEEEECC
T ss_pred ceeee---eeecch-------------------------hHHHHHHHH----hcCCEEEEec
Confidence 99987 444321 156677776 9999998754
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.78 E-value=0.019 Score=55.50 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=49.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL 241 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~ 241 (496)
.++.|||+|.|+|..|..|....+ ...|+|+|+++.-+..|++... -.++.+++.|+..+
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~-~~~v~~iE~D~~~~~~L~~~~~---~~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFE---GSPLQILKRDPYDW 102 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTT---TSSCEEECSCTTCH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHhcc---CCCcEEEeCchhhc
Confidence 477899999999999999987643 2589999999999998886643 35688999998765
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=94.48 E-value=0.014 Score=50.85 Aligned_cols=94 Identities=22% Similarity=0.380 Sum_probs=60.6
Q ss_pred hcCCCCCCeEeeccC-CC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc-cccCCCC
Q 010971 173 ALAPQEKERVIDMAA-AP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP-KVLGLNT 249 (496)
Q Consensus 173 ~L~~~~g~~VLDmcA-gp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~-~~~~~~~ 249 (496)
...+++|++||=.++ |+ |..++++|..++ ..|++.+.++.+++.+ +.+|.+.+. ++. +.. ......+
T Consensus 22 ~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G--~~vi~~~~~~~~~~~~----~~lGa~~~i--~~~--~~~~~~~~~~g 91 (171)
T d1iz0a2 22 RAQARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALP----LALGAEEAA--TYA--EVPERAKAWGG 91 (171)
T ss_dssp HTTCCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHH----HHTTCSEEE--EGG--GHHHHHHHTTS
T ss_pred HhCCCCCCEEEEEeccccchhhhhhhhcccc--cccccccccccccccc----cccccceee--ehh--hhhhhhhcccc
Confidence 346899999998775 33 344455666653 5899999999888765 458887643 221 111 1112367
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVY 310 (496)
||+|| | |+|. . +..+++++ +|||++|.
T Consensus 92 ~D~v~-d--~~G~-~--------------------------~~~~~~~l----~~~G~~v~ 118 (171)
T d1iz0a2 92 LDLVL-E--VRGK-E--------------------------VEESLGLL----AHGGRLVY 118 (171)
T ss_dssp EEEEE-E--CSCT-T--------------------------HHHHHTTE----EEEEEEEE
T ss_pred ccccc-c--ccch-h--------------------------HHHHHHHH----hcCCcEEE
Confidence 99875 5 6662 1 45667776 99999875
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.10 E-value=0.31 Score=44.79 Aligned_cols=84 Identities=15% Similarity=0.140 Sum_probs=60.1
Q ss_pred CCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCcccc--------CCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~--------~~~ 248 (496)
|..||=.| |++|.+..+|..+. ....|+..|.++.+++.+.+.++..+.. .+.++..|..+..... ..+
T Consensus 10 ~Kv~lITG-as~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g 88 (257)
T d1xg5a_ 10 DRLALVTG-ASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS 88 (257)
T ss_dssp TCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 55666555 55677887777653 3458999999999999999999998875 5788889987632111 126
Q ss_pred CcCEEEECCCCCCCC
Q 010971 249 TVDRVLLDAPCSGTG 263 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G 263 (496)
..|.++..|.....+
T Consensus 89 ~iD~lVnnAg~~~~~ 103 (257)
T d1xg5a_ 89 GVDICINNAGLARPD 103 (257)
T ss_dssp CCSEEEECCCCCCCC
T ss_pred CCCEEEecccccCCC
Confidence 899998877544333
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=93.91 E-value=0.039 Score=49.94 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=37.2
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~ 224 (496)
.+|+.|||.+||+|..+. .|..++ ..-+++|+++.-++.++.++.
T Consensus 211 ~~gd~VlDpF~GSGTT~~-aa~~~~--R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 211 NPNDLVLDCFMGSGTTAI-VAKKLG--RNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CTTCEEEESSCTTCHHHH-HHHHTT--CEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCchHHHH-HHHHcC--CeEEEEeCCHHHHHHHHHHHc
Confidence 689999999999997654 344442 578999999999999999886
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.73 E-value=0.046 Score=50.06 Aligned_cols=48 Identities=13% Similarity=0.064 Sum_probs=39.3
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG 227 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g 227 (496)
.+|+.|||.+||+|..+. .|..++ ...+++|+++.-++.+.++++.+.
T Consensus 206 ~~gdiVLDpF~GSGTT~~-Aa~~lg--R~~ig~El~~~y~~~a~~Ri~~~~ 253 (279)
T d1eg2a_ 206 HPGSTVLDFFAGSGVTAR-VAIQEG--RNSICTDAAPVFKEYYQKQLTFLQ 253 (279)
T ss_dssp CTTCEEEETTCTTCHHHH-HHHHHT--CEEEEEESSTHHHHHHHHHHHHC-
T ss_pred CCCCEEEecCCCCcHHHH-HHHHhC--CeEEEEeCCHHHHHHHHHHHHHhh
Confidence 589999999999998654 344443 589999999999999999998764
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=93.73 E-value=0.18 Score=43.26 Aligned_cols=75 Identities=20% Similarity=0.138 Sum_probs=48.9
Q ss_pred hcCCCCCCeEeeccCCC--chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc----cC
Q 010971 173 ALAPQEKERVIDMAAAP--GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV----LG 246 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgp--GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~----~~ 246 (496)
..+++||++||=.++|. |...+++|..++ ..|++.+.++.+++.++ .+|.+.+ +++.-.++... -.
T Consensus 23 ~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~G--a~Vi~~~~s~~k~~~~~----~lGa~~v--i~~~~~d~~~~v~~~t~ 94 (179)
T d1qora2 23 TYEIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQSAL----KAGAWQV--INYREEDLVERLKEITG 94 (179)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHH----HHTCSEE--EETTTSCHHHHHHHHTT
T ss_pred HhCCCCCCEEEEEccccccchHHHHHHHHhC--CeEeecccchHHHHHHH----hcCCeEE--EECCCCCHHHHHHHHhC
Confidence 34678999999885554 445566777664 68999999999987764 5787654 34433333221 13
Q ss_pred CCCcCEEEE
Q 010971 247 LNTVDRVLL 255 (496)
Q Consensus 247 ~~~fD~VLl 255 (496)
...+|+|+-
T Consensus 95 g~g~d~v~d 103 (179)
T d1qora2 95 GKKVRVVYD 103 (179)
T ss_dssp TCCEEEEEE
T ss_pred CCCeEEEEe
Confidence 467887654
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.58 E-value=0.03 Score=49.46 Aligned_cols=103 Identities=17% Similarity=0.135 Sum_probs=59.4
Q ss_pred CCCCCCeEeeccCCCchHH---HHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcC
Q 010971 175 APQEKERVIDMAAAPGGKT---TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT---~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD 251 (496)
..++|++||=.+| .||-+ ++||..++ ..|++.-.+++.++.+ +.+|.+.+.-...+....-......+||
T Consensus 28 ~~~~g~~VLI~ga-aGGVG~~aiQlak~~G--a~Viat~~s~~k~~~~----~~lGa~~vi~~~~~~~~~~~~~~~~gvD 100 (176)
T d1xa0a2 28 LTPERGPVLVTGA-TGGVGSLAVSMLAKRG--YTVEASTGKAAEHDYL----RVLGAKEVLAREDVMAERIRPLDKQRWA 100 (176)
T ss_dssp CCGGGCCEEESST-TSHHHHHHHHHHHHTT--CCEEEEESCTTCHHHH----HHTTCSEEEECC---------CCSCCEE
T ss_pred CCCCCCEEEEEec-cchHHHHHHHHHHHcC--CceEEecCchHHHHHH----HhcccceeeecchhHHHHHHHhhccCcC
Confidence 4667999996654 34444 45555542 5788888887777655 4678876432211111111112346899
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
+|+= .- | | ..+..++++| ++||++|.+...--+
T Consensus 101 ~vid-~v--g-g-------------------------~~~~~~l~~l----~~~Griv~~G~~~g~ 133 (176)
T d1xa0a2 101 AAVD-PV--G-G-------------------------RTLATVLSRM----RYGGAVAVSGLTGGA 133 (176)
T ss_dssp EEEE-CS--T-T-------------------------TTHHHHHHTE----EEEEEEEECSCCSSS
T ss_pred EEEE-cC--C-c-------------------------hhHHHHHHHh----CCCceEEEeecccCc
Confidence 7764 22 1 1 1267777886 999999886665433
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.41 E-value=0.066 Score=46.24 Aligned_cols=96 Identities=22% Similarity=0.251 Sum_probs=60.3
Q ss_pred cCCCCCCeEeeccC--CCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc----cCC
Q 010971 174 LAPQEKERVIDMAA--APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV----LGL 247 (496)
Q Consensus 174 L~~~~g~~VLDmcA--gpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~----~~~ 247 (496)
..+++|++||=.++ |.|..++++|..++ ..+++.+.++++++.+ +++|...+. .....++.+. ...
T Consensus 21 ~~~~~g~~VlI~ga~g~vG~~~iqla~~~g--~~vi~~~~~~~~~~~l----~~~Ga~~vi--~~~~~~~~~~v~~~t~~ 92 (183)
T d1pqwa_ 21 GRLSPGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREML----SRLGVEYVG--DSRSVDFADEILELTDG 92 (183)
T ss_dssp SCCCTTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHH----HTTCCSEEE--ETTCSTHHHHHHHHTTT
T ss_pred hCCCCCCEEEEECCCCCcccccchhhcccc--ccceeeeccccccccc----ccccccccc--cCCccCHHHHHHHHhCC
Confidence 46889999997653 34445556666553 5788888888877655 467887543 3333333221 134
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVY 310 (496)
.+||+|+. |.| | +.+..+++++ +++|++|.
T Consensus 93 ~g~d~v~d---~~g-~-------------------------~~~~~~~~~l----~~~G~~v~ 122 (183)
T d1pqwa_ 93 YGVDVVLN---SLA-G-------------------------EAIQRGVQIL----APGGRFIE 122 (183)
T ss_dssp CCEEEEEE---CCC-T-------------------------HHHHHHHHTE----EEEEEEEE
T ss_pred CCEEEEEe---ccc-c-------------------------hHHHHHHHHh----cCCCEEEE
Confidence 67999985 322 1 1356677776 99999875
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=93.35 E-value=0.32 Score=44.45 Aligned_cols=85 Identities=13% Similarity=0.132 Sum_probs=60.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
+|..+|=.| |++|.+..+|..+-.. ..|+.+|.+.+.++.+.+.+...|. ++..+..|.++..... ..+
T Consensus 9 enKvalITG-as~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~g 86 (251)
T d2c07a1 9 ENKVALVTG-AGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKKEEISEVINKILTEHK 86 (251)
T ss_dssp SSCEEEEES-TTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 355566555 5677888888866544 4899999999999999999988876 4667788987642111 236
Q ss_pred CcCEEEECCCCCCCCc
Q 010971 249 TVDRVLLDAPCSGTGV 264 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~ 264 (496)
..|.++.+|.....+.
T Consensus 87 ~iDilvnnag~~~~~~ 102 (251)
T d2c07a1 87 NVDILVNNAGITRDNL 102 (251)
T ss_dssp CCCEEEECCCCCCCCC
T ss_pred Cceeeeeccccccccc
Confidence 8999988776544443
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=93.15 E-value=0.15 Score=44.27 Aligned_cols=98 Identities=20% Similarity=0.200 Sum_probs=61.2
Q ss_pred HhcCCCCCCeEeeccCCC--chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc----ccc
Q 010971 172 MALAPQEKERVIDMAAAP--GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVL 245 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgp--GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~----~~~ 245 (496)
...++++|++||=.+|+. |..+++||..++ .+|++...++++++.+ +.+|...+. ..+-..+. ...
T Consensus 23 ~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~G--a~vi~~~~~~~~~~~~----~~~Ga~~vi--~~~~~~~~~~~~~~~ 94 (182)
T d1v3va2 23 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKIAYL----KQIGFDAAF--NYKTVNSLEEALKKA 94 (182)
T ss_dssp TTTCCCSSCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHH----HHTTCSEEE--ETTSCSCHHHHHHHH
T ss_pred HHhCCCCCCEEEEEeCCCchhHHHHHHHHccC--CEEEEeCCCHHHHHHH----Hhhhhhhhc--ccccccHHHHHHHHh
Confidence 345689999999666644 233345555543 5899999998886554 556877653 22222221 112
Q ss_pred CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 010971 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 246 ~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVY 310 (496)
....+|+||- |.| | +.+..++.++ ++||+++.
T Consensus 95 ~~~Gvd~v~D---~vG-~-------------------------~~~~~~~~~l----~~~G~~v~ 126 (182)
T d1v3va2 95 SPDGYDCYFD---NVG-G-------------------------EFLNTVLSQM----KDFGKIAI 126 (182)
T ss_dssp CTTCEEEEEE---SSC-H-------------------------HHHHHHGGGE----EEEEEEEE
T ss_pred hcCCCceeEE---ecC-c-------------------------hhhhhhhhhc----cCCCeEEe
Confidence 3467999875 333 1 2356677776 99998875
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.63 E-value=1.3 Score=40.02 Aligned_cols=79 Identities=15% Similarity=0.121 Sum_probs=55.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~-~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|..||=.||+ +|.+..+|..+ .....|+.+|.++++++.+.+.+...|. ++..+..|.++..... ..+
T Consensus 6 ~Gkv~lITGas-~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dvs~~~~v~~~~~~i~~~~g 83 (244)
T d1yb1a_ 6 TGEIVLITGAG-HGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSNREDIYSSAKKVKAEIG 83 (244)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 36667766655 55666666544 3345899999999999999999988775 5677788988753211 236
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
..|.++..+-
T Consensus 84 ~idilinnag 93 (244)
T d1yb1a_ 84 DVSILVNNAG 93 (244)
T ss_dssp CCSEEEECCC
T ss_pred CCceeEeecc
Confidence 7999988543
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.42 E-value=0.11 Score=47.47 Aligned_cols=95 Identities=14% Similarity=0.047 Sum_probs=56.3
Q ss_pred CeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEE
Q 010971 229 TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI 308 (496)
Q Consensus 229 ~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~L 308 (496)
++-+++.+|...+-+.++++++|+|+.|||+.. |. .+ |... .........++..+.++| +|||.+
T Consensus 3 ~~~~~~~~D~le~l~~l~d~SIDliitDPPYn~-~~--~~----~~~~----~~y~~~~~~~~~e~~rvL----k~~G~~ 67 (279)
T d1eg2a_ 3 TRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNI-ML--AD----WDDH----MDYIGWAKRWLAEAERVL----SPTGSI 67 (279)
T ss_dssp EEEEEEECCHHHHHHTSCTTCEEEEEECCCSBC-CG--GG----GGTC----SSHHHHHHHHHHHHHHHE----EEEEEE
T ss_pred ccceEEechHHHHHhhCcCCCccEEEECCCCCC-Cc--cc----ccCH----HHHHHHHHHHHHHHHHHh----CCCccE
Confidence 344677888877655567789999999999732 21 11 1111 112334456678888876 999988
Q ss_pred EEEeC-----CCCCcCCHHHHHHHHHhCCcEEeec
Q 010971 309 VYSTC-----SIMVTENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 309 VYSTC-----Si~~eENE~vV~~~L~~~~~~lv~~ 338 (496)
+.... .+...+.-..+..++...++.+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (279)
T d1eg2a_ 68 AIFGGLQYQGEAGSGDLISIISHMRQNSKMLLANL 102 (279)
T ss_dssp EEEECSCCCCCTTBCCHHHHHHHHHHHCCCEEEEE
T ss_pred EEecCccccccccccchhhHHHHHHhccCceeeee
Confidence 65321 1222233445556666666666543
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=92.04 E-value=0.06 Score=50.04 Aligned_cols=48 Identities=13% Similarity=0.090 Sum_probs=37.9
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG 227 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g 227 (496)
.+|+.|||.+||+|..+. .|..++ -..+++|++++-++.+..++....
T Consensus 249 ~~gdiVlDpF~GSGTT~~-AA~~lg--R~~Ig~El~~~y~~~a~~Rl~~~~ 296 (320)
T d1booa_ 249 EPDDLVVDIFGGSNTTGL-VAERES--RKWISFEMKPEYVAASAFRFLDNN 296 (320)
T ss_dssp CTTCEEEETTCTTCHHHH-HHHHTT--CEEEEEESCHHHHHHHHGGGSCSC
T ss_pred cCCCEEEecCCCCcHHHH-HHHHcC--CcEEEEeCCHHHHHHHHHHHHhcc
Confidence 589999999999997554 344443 578999999999999988876543
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=91.76 E-value=0.89 Score=41.54 Aligned_cols=84 Identities=10% Similarity=-0.025 Sum_probs=57.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---------cCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---------LGL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~-~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---------~~~ 247 (496)
.|.+||=.|| ++|.+..+|..+ .....|+.++.++.+++.+.+.+...+. ++.++..|..+.... ...
T Consensus 5 ~gK~alITGa-s~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~-~~~~~~~D~s~~~~~~~~~~~~~~~~~ 82 (258)
T d1ae1a_ 5 KGTTALVTGG-SKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSRTERDKLMQTVAHVFD 82 (258)
T ss_dssp TTCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 4667776665 477777777544 4446999999999999999999988885 455667888764311 012
Q ss_pred CCcCEEEECCCCCCCC
Q 010971 248 NTVDRVLLDAPCSGTG 263 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G 263 (496)
+..|+++..|.....+
T Consensus 83 g~idilinnag~~~~~ 98 (258)
T d1ae1a_ 83 GKLNILVNNAGVVIHK 98 (258)
T ss_dssp SCCCEEEECCCCCCCC
T ss_pred CCcEEEeccccccccC
Confidence 4688888766544443
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=91.16 E-value=0.19 Score=49.71 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=47.9
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCC
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVT 229 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~ 229 (496)
.+.+++.++|+||--|..+..++...++. +.|+|+|.++.-...++.|+..++..
T Consensus 209 ~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~ 264 (395)
T d2py6a1 209 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDT 264 (395)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTS
T ss_pred CcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccc
Confidence 35788999999999999998888877653 58999999999999999999988754
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.90 E-value=0.62 Score=42.71 Aligned_cols=123 Identities=12% Similarity=0.106 Sum_probs=76.7
Q ss_pred CCeEeeccCCCchHHHHHHHHc-C-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALM-K-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~-~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
|.+|-=+.-|++|.+..+|..+ . +...|+..+.+.++++.+.+.++..|. ++.++..|..+..... ..+
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dvs~~~sv~~~~~~~~~~~g 80 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKEYG 80 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence 6778666667788888887654 2 346899999999999999999988775 4667788887753221 126
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHH----HHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~----l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
..|+++.+|= +....+.. ..+.++... ...-...+...++.. ++++|+||..+.
T Consensus 81 ~iDiLVnNAG-----i~~~~~~~--~~~~~~~~~~~~vN~~g~~~l~~~~lp~----m~~~g~ivnisS 138 (275)
T d1wmaa1 81 GLDVLVNNAG-----IAFKVADP--TPFHIQAEVTMKTNFFGTRDVCTELLPL----IKPQGRVVNVSS 138 (275)
T ss_dssp SEEEEEECCC-----CCCCTTCC--SCHHHHHHHHHHHHTHHHHHHHHHHGGG----EEEEEEEEEECC
T ss_pred CcEEEEEcCC-----cCCCCCcc--cCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCcccccc
Confidence 7999998873 32222111 112222221 111222344444444 488999887543
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=90.44 E-value=1.8 Score=39.33 Aligned_cols=125 Identities=13% Similarity=0.095 Sum_probs=74.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------C-C
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------G-L 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~-~ 247 (496)
.|.++|=.|+ .+|.+..+|..+-. ...|+.+|.++++++.+.+.+...|. ++.++..|..+..... . .
T Consensus 7 ~GK~alITGa-s~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d2ae2a_ 7 EGCTALVTGG-SRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGF-KVEASVCDLSSRSERQELMNTVANHFH 84 (259)
T ss_dssp TTCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 4667775554 56778777776543 35899999999999999999988774 5667778887632110 1 2
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHH----HHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYL----QKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~l----Q~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
...|.++..|-....+ | ....+.++....... ...+...++..+.. ..+|.||+.+.
T Consensus 85 ~~idilvnnAG~~~~~-----~--~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~--~~~G~Ii~isS 145 (259)
T d2ae2a_ 85 GKLNILVNNAGIVIYK-----E--AKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKA--SERGNVVFISS 145 (259)
T ss_dssp TCCCEEEECCCCCCCC-----C--GGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH--TSSEEEEEECC
T ss_pred CCceEEEECCceeccC-----c--cccCCHHHHHHHHhcccceeEEEEeeccchhhh--hcccccccccc
Confidence 3689998865432222 1 123344444332221 12233444443311 46788877553
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=90.40 E-value=0.11 Score=45.14 Aligned_cols=100 Identities=17% Similarity=0.156 Sum_probs=59.2
Q ss_pred CCCCCeEeeccCCCchHH---HHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE
Q 010971 176 PQEKERVIDMAAAPGGKT---TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT---~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
..+|++||= -+|.||-+ ++||..++ .+|++..-++++.+.+ +.+|.+.+.....+..........+.+|.
T Consensus 21 ~~~~~~VLV-~gaaGgVG~~avQlAk~~G--a~Viat~~s~~k~~~~----~~lGad~vi~~~~~~~~~~~~~~~~gvd~ 93 (167)
T d1tt7a2 21 SPEKGSVLV-TGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYL----KQLGASEVISREDVYDGTLKALSKQQWQG 93 (167)
T ss_dssp CGGGCCEEE-ESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHH----HHHTCSEEEEHHHHCSSCCCSSCCCCEEE
T ss_pred CCCCCEEEE-eCCcchHHHHHHHHHHHcC--CceEEEecCHHHHHHH----HhhcccceEeccchhchhhhcccCCCceE
Confidence 445777885 34455554 55666664 5899998887776654 56788765322211111111122367998
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
||-.. | | ..+..+++++ ++||++|..-++-
T Consensus 94 vid~v---g-g-------------------------~~~~~~~~~l----~~~G~iv~~G~~~ 123 (167)
T d1tt7a2 94 AVDPV---G-G-------------------------KQLASLLSKI----QYGGSVAVSGLTG 123 (167)
T ss_dssp EEESC---C-T-------------------------HHHHHHHTTE----EEEEEEEECCCSS
T ss_pred EEecC---c-H-------------------------HHHHHHHHHh----ccCceEEEeeccC
Confidence 86421 1 1 1367778887 9999998765554
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=90.25 E-value=0.7 Score=42.22 Aligned_cols=82 Identities=17% Similarity=0.157 Sum_probs=57.7
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|..||=.| |.+|.+..+|..+- ....|+.+|.++++++.+.+.+...|. ++..+..|..+..... ..+
T Consensus 4 ~gK~alITG-as~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (260)
T d1zema1 4 NGKVCLVTG-AGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGV-EARSYVCDVTSEEAVIGTVDSVVRDFG 81 (260)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTS-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 466777555 45677777776543 345899999999999999999988876 4667788887642111 126
Q ss_pred CcCEEEECCCCCC
Q 010971 249 TVDRVLLDAPCSG 261 (496)
Q Consensus 249 ~fD~VLlDaPCSg 261 (496)
..|.++..+-..+
T Consensus 82 ~iDilVnnaG~~~ 94 (260)
T d1zema1 82 KIDFLFNNAGYQG 94 (260)
T ss_dssp CCCEEEECCCCCC
T ss_pred CCCeehhhhcccc
Confidence 8999998776443
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.02 E-value=1.8 Score=39.56 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=57.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEecCCCCCcccc--------C
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVT--NTIVCNYDGNELPKVL--------G 246 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~--nv~v~~~D~~~~~~~~--------~ 246 (496)
.|.++|=.||+ +|.+..+|..+- ....|+.+|.+.++++.+.+.+...|.. ++..+..|..+..... .
T Consensus 3 ~gK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (274)
T d1xhla_ 3 SGKSVIITGSS-NGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 81 (274)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 36677766655 567777776553 3358999999999999999999998864 5788889987742211 1
Q ss_pred CCCcCEEEECC
Q 010971 247 LNTVDRVLLDA 257 (496)
Q Consensus 247 ~~~fD~VLlDa 257 (496)
.+..|.++..|
T Consensus 82 ~G~iDilVnnA 92 (274)
T d1xhla_ 82 FGKIDILVNNA 92 (274)
T ss_dssp HSCCCEEEECC
T ss_pred cCCceEEEeec
Confidence 26789998865
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.66 E-value=0.95 Score=41.10 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=57.5
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCc-EEEE-EeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTG-LIYA-NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------- 245 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A-~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~-------- 245 (496)
|..|.+||=.| |+||.+.++|..+...| .|+. .+.+...++.+.+.+...|. ++.++..|..+.....
T Consensus 3 ~L~GK~alITG-as~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~ 80 (259)
T d1ja9a_ 3 PLAGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVALFDKAVS 80 (259)
T ss_dssp TTTTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC-CceEecCCCCCHHHHHHHHHHHHH
Confidence 45688888555 66888888887664444 5654 57788889999999999987 5667888987642111
Q ss_pred CCCCcCEEEECCC
Q 010971 246 GLNTVDRVLLDAP 258 (496)
Q Consensus 246 ~~~~fD~VLlDaP 258 (496)
..+..|.++..|.
T Consensus 81 ~~g~idilinnag 93 (259)
T d1ja9a_ 81 HFGGLDFVMSNSG 93 (259)
T ss_dssp HHSCEEEEECCCC
T ss_pred HcCCCcEEEeccc
Confidence 1257898887664
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=89.58 E-value=1.5 Score=39.77 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=52.5
Q ss_pred ccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCCcCEEEE
Q 010971 185 MAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTVDRVLL 255 (496)
Q Consensus 185 mcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~fD~VLl 255 (496)
+.-|.+|.+..+|..+- ....|+.+|.++++++.+.+.+...|. ++.++..|.++..... ..+..|.++.
T Consensus 6 ITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVn 84 (255)
T d1gega_ 6 VTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG-HAVAVKVDVSDRDQVFAAVEQARKTLGGFDVIVN 84 (255)
T ss_dssp EETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHhCCccEEEe
Confidence 33455778888876553 345899999999999999999998875 4667788987642211 1368999988
Q ss_pred CC
Q 010971 256 DA 257 (496)
Q Consensus 256 Da 257 (496)
+|
T Consensus 85 nA 86 (255)
T d1gega_ 85 NA 86 (255)
T ss_dssp CC
T ss_pred cc
Confidence 65
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.41 E-value=1.4 Score=40.40 Aligned_cols=80 Identities=15% Similarity=0.111 Sum_probs=57.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEecCCCCCcccc--------C
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVT--NTIVCNYDGNELPKVL--------G 246 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~--nv~v~~~D~~~~~~~~--------~ 246 (496)
.|.++|=.| |.+|.+..+|..+-. ...|+.+|.+.++++.+.+.+...|.. ++..+..|..+..... .
T Consensus 4 ~gK~alVTG-as~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 82 (272)
T d1xkqa_ 4 SNKTVIITG-SSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ 82 (272)
T ss_dssp TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-cCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 356666555 556777777765533 359999999999999999999988764 4788889987642110 1
Q ss_pred CCCcCEEEECCC
Q 010971 247 LNTVDRVLLDAP 258 (496)
Q Consensus 247 ~~~fD~VLlDaP 258 (496)
.+..|.++.+|-
T Consensus 83 ~g~iDilvnnAG 94 (272)
T d1xkqa_ 83 FGKIDVLVNNAG 94 (272)
T ss_dssp HSCCCEEEECCC
T ss_pred hCCceEEEeCCc
Confidence 267999988653
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=89.39 E-value=1.3 Score=40.17 Aligned_cols=125 Identities=15% Similarity=0.080 Sum_probs=72.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCC-HHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMK-ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s-~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|.++|= .-|++|.+..+|..+- ....|+.+|.+ ...++.+...+...+-.++.++..|..+..... ..
T Consensus 3 ~gK~alI-TGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (260)
T d1x1ta1 3 KGKVAVV-TGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM 81 (260)
T ss_dssp TTCEEEE-TTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred CcCEEEE-eCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4667774 4455777887776554 33589999986 778888888775543346778889988742211 12
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~----~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+..|.++.+|--...+.+. ..+.++..... .-...+...++..+.. +.+|.||..+
T Consensus 82 G~iDiLVnnAG~~~~~~~~-------~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~--~~~G~Iv~is 141 (260)
T d1x1ta1 82 GRIDILVNNAGIQHTALIE-------DFPTEKWDAILALNLSAVFHGTAAALPHMKK--QGFGRIINIA 141 (260)
T ss_dssp SCCSEEEECCCCCCCCCGG-------GCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH--HTCEEEEEEC
T ss_pred CCCcEEEeecccccCCchh-------hhhHHhhhhhhhccccccccccchhhhhHhh--cCCceEeecc
Confidence 6799999877543333222 23333333322 2223345555555421 2457777653
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=89.18 E-value=1.3 Score=40.05 Aligned_cols=124 Identities=9% Similarity=-0.010 Sum_probs=70.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~-~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.++|=.| |.+|.+..+|..+ .....|+.+|.+.++++.+.+.+..- .++.++..|..+..... ..+
T Consensus 5 ~gK~alVTG-as~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (251)
T d1zk4a1 5 DGKVAIITG-GTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP--DQIQFFQHDSSDEDGWTKLFDATEKAFG 81 (251)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCC--CcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 366666555 5566777777654 33458999999999998887776432 35778888987642111 126
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~----~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
..|.++..|--...+-+ +..+.++..... .-...+...++..+.. -+.||.||..+
T Consensus 82 ~iDiLVnnAg~~~~~~~-------~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~-~~~gg~Ii~is 141 (251)
T d1zk4a1 82 PVSTLVNNAGIAVNKSV-------EETTTAEWRKLLAVNLDGVFFGTRLGIQRMKN-KGLGASIINMS 141 (251)
T ss_dssp SCCEEEECCCCCCCCCT-------TTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-SSSCEEEEEEC
T ss_pred CceEEEeccccccccch-------hcccccchhhhccccccccchhHHHHHHHHHh-cCCCCceEeee
Confidence 89988876533322222 223444433222 2223345555555421 13457776543
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=89.15 E-value=1.1 Score=40.89 Aligned_cols=78 Identities=17% Similarity=0.137 Sum_probs=56.1
Q ss_pred CCeEeeccCCCchHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEecCCCCCcccc--------CC
Q 010971 179 KERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVT--NTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~-~~~g~V~A~D~s~~rl~~l~~nl~r~g~~--nv~v~~~D~~~~~~~~--------~~ 247 (496)
|..+|=.| |++|.+..+|..+ .....|+.+|.+.++++.+.+.+...|.. ++.++..|..+..... ..
T Consensus 5 gKvalVTG-as~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 83 (264)
T d1spxa_ 5 EKVAIITG-SSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF 83 (264)
T ss_dssp TCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeC-cCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 55556455 5577787777655 34458999999999999999999988764 5888889987642111 12
Q ss_pred CCcCEEEECC
Q 010971 248 NTVDRVLLDA 257 (496)
Q Consensus 248 ~~fD~VLlDa 257 (496)
+..|.++.+|
T Consensus 84 g~iDilvnnA 93 (264)
T d1spxa_ 84 GKLDILVNNA 93 (264)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEeeccc
Confidence 6799887754
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=88.86 E-value=0.16 Score=46.93 Aligned_cols=70 Identities=13% Similarity=0.041 Sum_probs=46.5
Q ss_pred eEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEE
Q 010971 230 NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309 (496)
Q Consensus 230 nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LV 309 (496)
+-.++++|...+.+.++.+++|+|+.|||+-. |. +- ...............+.|..+.++| +++|.++
T Consensus 12 ~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~-~~---~~----~~~~~~~~~y~~~~~~~l~~~~rvL----k~~G~i~ 79 (320)
T d1booa_ 12 NGSMYIGDSLELLESFPEESISLVMTSPPFAL-QR---KK----EYGNLEQHEYVDWFLSFAKVVNKKL----KPDGSFV 79 (320)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSS-SC---SC----SSCSCHHHHHHHHHHHHHHHHHHHE----EEEEEEE
T ss_pred CCEEEehhHHHHHhhCccCCCCEEEECCCCcC-CC---CC----CCCCCCHHHHHHHHHHHHHHHHHhC----cccCccc
Confidence 34788999887666677789999999999842 21 10 0111122334455567788888876 9999887
Q ss_pred EE
Q 010971 310 YS 311 (496)
Q Consensus 310 YS 311 (496)
..
T Consensus 80 i~ 81 (320)
T d1booa_ 80 VD 81 (320)
T ss_dssp EE
T ss_pred cc
Confidence 54
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=88.48 E-value=1.6 Score=39.63 Aligned_cols=78 Identities=17% Similarity=0.248 Sum_probs=56.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.++|=.| |.+|.+..+|..+.. ...|+.+|.+.++++.+.+.++..|. ++.++..|..+..... ..+
T Consensus 10 ~gK~alITG-as~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~-~~~~~~~Dvs~~~~~~~~~~~~~~~~g 87 (255)
T d1fmca_ 10 DGKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 466777554 557788888876544 35899999999999999999998875 4667788987642210 126
Q ss_pred CcCEEEECC
Q 010971 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~fD~VLlDa 257 (496)
..|.++..|
T Consensus 88 ~iDilvnnA 96 (255)
T d1fmca_ 88 KVDILVNNA 96 (255)
T ss_dssp SCCEEEECC
T ss_pred CCCEeeeCC
Confidence 799888754
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=87.98 E-value=0.36 Score=41.99 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=39.9
Q ss_pred cCCCCCCeEeeccCCCch---HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEE
Q 010971 174 LAPQEKERVIDMAAAPGG---KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIV 233 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGg---KT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v 233 (496)
..++||++||=..+|.|+ .++++|..++ ..|++.--+....+...+.++.+|.+.+..
T Consensus 24 ~~~~~g~~vli~~ga~g~vG~~aiqlAk~~G--a~vI~~v~~~~~~~~~~~~~~~lGad~vi~ 84 (189)
T d1gu7a2 24 VKLTPGKDWFIQNGGTSAVGKYASQIGKLLN--FNSISVIRDRPNLDEVVASLKELGATQVIT 84 (189)
T ss_dssp SCCCTTTCEEEESCTTSHHHHHHHHHHHHHT--CEEEEEECCCTTHHHHHHHHHHHTCSEEEE
T ss_pred hCCCCCCEEEEEeCCCchHHHHHHHHHhhcC--CeEEEEEecccccchHHhhhhhccccEEEe
Confidence 467899988877555444 4556777774 467776555556677777888899987543
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=87.73 E-value=1.9 Score=38.95 Aligned_cols=77 Identities=18% Similarity=0.174 Sum_probs=55.0
Q ss_pred CeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCCc
Q 010971 180 ERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTV 250 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~f 250 (496)
..+|=.| |.+|.+..+|..+- ....|+.+|.+++.++.+.+.+...|. ++.++..|..+..... ..+..
T Consensus 3 KValITG-as~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 80 (257)
T d2rhca1 3 EVALVTG-ATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSVPEIEALVAAVVERYGPV 80 (257)
T ss_dssp CEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred CEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 3344444 56777887777553 335899999999999999999998876 4677788987643211 23689
Q ss_pred CEEEECCC
Q 010971 251 DRVLLDAP 258 (496)
Q Consensus 251 D~VLlDaP 258 (496)
|.++.+|-
T Consensus 81 DilVnnAG 88 (257)
T d2rhca1 81 DVLVNNAG 88 (257)
T ss_dssp SEEEECCC
T ss_pred CEEEeccc
Confidence 99988664
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.71 E-value=1.9 Score=39.27 Aligned_cols=125 Identities=13% Similarity=0.071 Sum_probs=72.7
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------C-C
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------G-L 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~-~ 247 (496)
.|.+||=.|+ ++|.+..+|..+- ....|+.+|.++.+++.+.+.+...+. ++..+..|........ . .
T Consensus 7 kgK~alVTGa-s~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d1xq1a_ 7 KAKTVLVTGG-TKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASLRPEREKLMQTVSSMFG 84 (259)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEeccCCCHHHHHHHHHHHHHHhC
Confidence 3667776665 5677777776543 345899999999999999999988765 5777788887642211 1 2
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~----~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
+..|.++..|.....+-+. ..+.++..... .-...+.+.++..+.. +.+|.||+.+.
T Consensus 85 g~idilvnnAG~~~~~~~~-------~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~--~~~G~Iv~isS 145 (259)
T d1xq1a_ 85 GKLDILINNLGAIRSKPTL-------DYTAEDFSFHISTNLESAYHLSQLAHPLLKA--SGCGNIIFMSS 145 (259)
T ss_dssp TCCSEEEEECCC------C-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HSSCEEEEEC-
T ss_pred CCcccccccccccCCCchh-------hCCHHHHHHHHHHHhhhheeeehhhhhcccc--ccccccccccc
Confidence 5689999876544433222 23333333222 1122344455544421 34688887643
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=87.03 E-value=0.13 Score=46.24 Aligned_cols=89 Identities=12% Similarity=0.112 Sum_probs=51.7
Q ss_pred EEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 233 VCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 233 v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+.++|..++-+.++++++|+|+.|||+. .|. .+ ..... ..........+.+..+.+.| +|||.++...
T Consensus 7 i~~gDcle~l~~lpd~sVdliitdPPY~-~~~--~~--~d~~~---~~~~y~~~~~~~~~e~~rvL----k~~g~~~~~~ 74 (256)
T d1g60a_ 7 IHQMNCFDFLDQVENKSVQLAVIDPPYN-LSK--AD--WDSFD---SHNEFLAFTYRWIDKVLDKL----DKDGSLYIFN 74 (256)
T ss_dssp EEECCHHHHHHHSCTTCEEEEEECCCCS-SCS--SG--GGCCS---SHHHHHHHHHHHHHHHHHHE----EEEEEEEEEE
T ss_pred EEeccHHHHHhhCcCCCcCEEEECCCCC-CCc--Cc--CcCCC---CHHHHHHHHHHHHHHhhhcc----ccCccccccc
Confidence 6678887754556678999999999973 221 00 00111 23334455567788888876 9999876432
Q ss_pred CCCCCcCCHHHHHHHHHhCCcEEee
Q 010971 313 CSIMVTENEAVIDYALKKRDVKLVP 337 (496)
Q Consensus 313 CSi~~eENE~vV~~~L~~~~~~lv~ 337 (496)
+ ..+-.-+...+...++.+..
T Consensus 75 -~---~~~~~~~~~~~~~~g~~~~~ 95 (256)
T d1g60a_ 75 -T---PFNCAFICQYLVSKGMIFQN 95 (256)
T ss_dssp -C---HHHHHHHHHHHHHTTCEEEE
T ss_pred -C---chhhhhhhhhhhcccceeee
Confidence 1 12223333444455665544
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.97 E-value=2.2 Score=38.38 Aligned_cols=75 Identities=19% Similarity=0.126 Sum_probs=49.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-CCCCcCE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-GLNTVDR 252 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~-~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-~~~~fD~ 252 (496)
.|.++|=.| |.+|.+..++..+ .....|+.+|.+.+.++.+.+.+. ++..+..|..+.... + ..+..|.
T Consensus 4 ~GK~alITG-as~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~g~iDi 77 (242)
T d1cyda_ 4 SGLRALVTG-AGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECP-----GIEPVCVDLGDWDATEKALGGIGPVDL 77 (242)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST-----TCEEEECCTTCHHHHHHHHTTCCCCSE
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcC-----CCeEEEEeCCCHHHHHHHHHHcCCCeE
Confidence 477788555 4566777777755 344599999999988877765442 355566787664211 1 2368999
Q ss_pred EEECCC
Q 010971 253 VLLDAP 258 (496)
Q Consensus 253 VLlDaP 258 (496)
++..|-
T Consensus 78 lVnnAg 83 (242)
T d1cyda_ 78 LVNNAA 83 (242)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 888664
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=86.19 E-value=3.5 Score=37.51 Aligned_cols=80 Identities=11% Similarity=0.015 Sum_probs=54.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.++|=.|| +||.+..+|..+- ....|+.+|.+..++..+.+.+....-.++.++..|..+..... ..+
T Consensus 24 ~gK~alITGa-s~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g 102 (294)
T d1w6ua_ 24 QGKVAFITGG-GTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAG 102 (294)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhcc
Confidence 3667775555 5678888876543 33599999999999998888776543345667778887643211 236
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
..|.++..+-
T Consensus 103 ~iDilvnnAg 112 (294)
T d1w6ua_ 103 HPNIVINNAA 112 (294)
T ss_dssp SCSEEEECCC
T ss_pred ccchhhhhhh
Confidence 8998887554
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=86.14 E-value=4.6 Score=36.41 Aligned_cols=126 Identities=12% Similarity=0.111 Sum_probs=73.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCC-HHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMK-ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s-~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|.+||=.|| ++|.+..+|..+...| .|+.+|.+ .+.++.+.+.++..|. ++.++..|..+..... ..
T Consensus 17 ~gK~~lITGa-s~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~~~ 94 (272)
T d1g0oa_ 17 EGKVALVTGA-GRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVVEDIVRMFEEAVKIF 94 (272)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCC-ceeeEeCCCCCHHHHHHHHHHHHHHh
Confidence 3667776665 5667777776554434 88888876 6778888888888876 4666778887632110 12
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+..|.++..+.....+-+.....-.|.. .+.....-...+...++..+ +.+|.++..+
T Consensus 95 g~idilV~nag~~~~~~~~~~~~~~~~~---~~~~nl~~~~~~~~~~~~~m----~~~g~~i~i~ 152 (272)
T d1g0oa_ 95 GKLDIVCSNSGVVSFGHVKDVTPEEFDR---VFTINTRGQFFVAREAYKHL----EIGGRLILMG 152 (272)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHH---HHHHHTHHHHHHHHHHHHHS----CTTCEEEEEC
T ss_pred CCCCccccccccchhhhhhhhhhhHHHH---Hhhhccceeeeecccccccc----cccccccccc
Confidence 6789998877655544333322222211 11212222344556666655 5566655543
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.09 E-value=3.4 Score=37.40 Aligned_cols=86 Identities=10% Similarity=0.088 Sum_probs=58.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.||+. |.+..+|..+. ....|+.++.+.++++.+.+.+...+...+.+...|........ ..+
T Consensus 13 ~GK~alITGass-GIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g 91 (269)
T d1xu9a_ 13 QGKKVIVTGASK-GIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG 91 (269)
T ss_dssp TTCEEEESSCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHhC
Confidence 577888777665 56777776543 33599999999999999998887776666667777765432110 125
Q ss_pred CcCEEEECCCCCCCCc
Q 010971 249 TVDRVLLDAPCSGTGV 264 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~ 264 (496)
..|.++..+-....+.
T Consensus 92 ~~~~li~nag~~~~~~ 107 (269)
T d1xu9a_ 92 GLDMLILNHITNTSLN 107 (269)
T ss_dssp SCSEEEECCCCCCCCC
T ss_pred Cccccccccccccccc
Confidence 7899998875444443
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=85.72 E-value=0.94 Score=42.79 Aligned_cols=121 Identities=13% Similarity=0.076 Sum_probs=63.8
Q ss_pred ccCCCchHHHHHHHHcCCCc-EEEEEeCC-----HHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---cCCCCcCEEEE
Q 010971 185 MAAAPGGKTTYIAALMKNTG-LIYANEMK-----ASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LGLNTVDRVLL 255 (496)
Q Consensus 185 mcAgpGgKT~~lA~l~~~~g-~V~A~D~s-----~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~~~~~fD~VLl 255 (496)
+.-|+|-.+.+|+..+-..| .|+++|.. ..+++.+..... ....++.++.+|.++.... +....+|.|+-
T Consensus 6 ITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v~h 84 (357)
T d1db3a_ 6 ITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPH-TCNPKFHLHYGDLSDTSNLTRILREVQPDEVYN 84 (357)
T ss_dssp EETTTSHHHHHHHHHHHHTTCEEEEECC----------------------CCEEECCCCSSCHHHHHHHHHHHCCSEEEE
T ss_pred EeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhh-hcCCCeEEEEeecCCHHHHHHHHhccCCCEEEE
Confidence 44567999999887654334 89999974 344444333221 1224688888888765322 22236899998
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE-EeCCCC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY-STCSIM 316 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVY-STCSi~ 316 (496)
=|-+++.+.-..+|+.- +......-..||..|...- ++...++|| |||+++
T Consensus 85 ~aa~~~~~~~~~~~~~~-------~~~Nv~gt~nllea~~~~~---~~~~~r~i~~SS~~vY 136 (357)
T d1db3a_ 85 LGAMSHVAVSFESPEYT-------ADVDAMGTLRLLEAIRFLG---LEKKTRFYQASTSELY 136 (357)
T ss_dssp CCCCCTTTTTTSCHHHH-------HHHHTHHHHHHHHHHHHTT---CTTTCEEEEEEEGGGG
T ss_pred eecccccchhhhCHHHH-------HHHHHHHHHHHHHHHHHhC---CCCCcEEEEEEchhhh
Confidence 66555554433333321 2223333456677666541 244456666 888764
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=85.10 E-value=3.4 Score=37.40 Aligned_cols=77 Identities=13% Similarity=0.092 Sum_probs=53.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|..||=.|++ +|.+..+|..+- ....|+.+|.+..+++.+.+.+...+ .+.++..|..+..... ..+
T Consensus 5 ~gKvalITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (268)
T d2bgka1 5 QDKVAIITGGA-GGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPD--VISFVHCDVTKDEDVRNLVDTTIAKHG 81 (268)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTT--TEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCC--ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46677766655 667777776553 34599999999999988887775433 3666778887642110 126
Q ss_pred CcCEEEECC
Q 010971 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~fD~VLlDa 257 (496)
..|.++..|
T Consensus 82 ~iD~lVnnA 90 (268)
T d2bgka1 82 KLDIMFGNV 90 (268)
T ss_dssp CCCEEEECC
T ss_pred Ccceecccc
Confidence 899998865
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.71 E-value=1.7 Score=39.22 Aligned_cols=83 Identities=12% Similarity=0.087 Sum_probs=55.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.++|=.|++ +|.+..+|..+. ....|+.+|.++++++.+.+.+. .++.++..|..+..... ..+
T Consensus 5 ~gK~alITGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 79 (244)
T d1nffa_ 5 TGKVALVSGGA-RGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA----DAARYVHLDVTQPAQWKAAVDTAVTAFG 79 (244)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG----GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh----CcceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 46667766654 667777776553 34589999999998887766653 35677788987642210 126
Q ss_pred CcCEEEECCCCCCCCcc
Q 010971 249 TVDRVLLDAPCSGTGVI 265 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i 265 (496)
..|.++..|.....+.+
T Consensus 80 ~idilinnAG~~~~~~~ 96 (244)
T d1nffa_ 80 GLHVLVNNAGILNIGTI 96 (244)
T ss_dssp CCCEEEECCCCCCCBCT
T ss_pred CCeEEEECCcccCCCch
Confidence 79999987765544433
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.23 E-value=1.3 Score=38.19 Aligned_cols=99 Identities=15% Similarity=0.161 Sum_probs=60.5
Q ss_pred cCCCCC--CeEeecc--CCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---cC
Q 010971 174 LAPQEK--ERVIDMA--AAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LG 246 (496)
Q Consensus 174 L~~~~g--~~VLDmc--AgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~~ 246 (496)
.++++| +.||=.+ .|-|..++++|..++. ..|+++..+.++...+ ...+|.+.+ +++.-..+... ..
T Consensus 24 ~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga-~~vi~~~~~~e~~~~l---~~~~gad~v--i~~~~~~~~~~~~~~~ 97 (187)
T d1vj1a2 24 GHISAGSNQTMVVSGAAGACGSLAGQIGHLLGC-SRVVGICGTQEKCLFL---TSELGFDAA--VNYKTGNVAEQLREAC 97 (187)
T ss_dssp SCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTC-SEEEEEESSHHHHHHH---HHHSCCSEE--EETTSSCHHHHHHHHC
T ss_pred hCCCCCCCCEEEEECCCchhhHHHHHHHHHcCC-cceecccchHHHHhhh---hhcccceEE--eeccchhHHHHHHHHh
Confidence 456766 7788654 5667888889888753 3677777776655544 334576543 33332222211 12
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
...+|+|| |+ .| | ..+..+++.+ ++||++|+.
T Consensus 98 ~~GvDvv~-D~--vG-g-------------------------~~~~~~~~~l----~~~G~iv~~ 129 (187)
T d1vj1a2 98 PGGVDVYF-DN--VG-G-------------------------DISNTVISQM----NENSHIILC 129 (187)
T ss_dssp TTCEEEEE-ES--SC-H-------------------------HHHHHHHTTE----EEEEEEEEC
T ss_pred ccCceEEE-ec--CC-c-------------------------hhHHHHhhhc----cccccEEEe
Confidence 36799996 33 22 1 1356677776 999999864
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=82.97 E-value=3.5 Score=37.31 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=55.2
Q ss_pred CCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCcccc--------CCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~--------~~~ 248 (496)
|.++|=.|+ .+|.+..++..+- ....|+.+|.+.++++.+...+...+.. ++..+..|..+..... ..+
T Consensus 4 gK~alITGa-s~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G 82 (258)
T d1iy8a_ 4 DRVVLITGG-GSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG 82 (258)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence 556665555 4666766666543 3458999999999999998888776543 5778888987643211 126
Q ss_pred CcCEEEECCCC
Q 010971 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~fD~VLlDaPC 259 (496)
..|.++.+|-.
T Consensus 83 ~iDiLVnnAG~ 93 (258)
T d1iy8a_ 83 RIDGFFNNAGI 93 (258)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 79999887643
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=82.92 E-value=7.4 Score=34.60 Aligned_cols=121 Identities=13% Similarity=0.076 Sum_probs=69.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.++|=.||+ +|.+..+|..+-. ...|+.+|.++++++.+.+.+.. ++..+..|.++..... ..+
T Consensus 3 ~gK~alITGas-~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~----~~~~~~~Dv~~~~~v~~~~~~~~~~~g 77 (243)
T d1q7ba_ 3 EGKIALVTGAS-RGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGA----NGKGLMLNVTDPASIESVLEKIRAEFG 77 (243)
T ss_dssp TTCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG----GEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCC----CCcEEEEEecCHHHhhhhhhhhhcccC
Confidence 36666766655 6677777765543 34899999999999888766632 4556678887642110 236
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~----~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
..|.++..|-....+-+. ..+.++..... .-...+.+.++..+.. +.+|.||+.+
T Consensus 78 ~iDilVnnAg~~~~~~~~-------~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~--~~~G~II~is 136 (243)
T d1q7ba_ 78 EVDILVNNAGITRDNLLM-------RMKDEEWNDIIETNLSSVFRLSKAVMRAMMK--KRHGRIITIG 136 (243)
T ss_dssp SCSEEEECCCCCCCCCGG-------GCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH--HTCEEEEEEC
T ss_pred Ccceehhhhhhccccccc-------cccccccccccceeechhhhhHHHHHHHHHH--cCCCEeeeec
Confidence 899998876433333222 22333332221 2223345555554421 3468888754
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.65 E-value=4.8 Score=35.93 Aligned_cols=74 Identities=18% Similarity=0.134 Sum_probs=49.7
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-CCCCcCE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-GLNTVDR 252 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-~~~~fD~ 252 (496)
.|.+||=.|++ +|.+..+|..+. ....|+.+|.++..++.+...+. ++..+..|..+.... + ..+..|.
T Consensus 6 ~GK~~lITGas-~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~-----~~~~~~~Dv~d~~~v~~~~~~~g~iDi 79 (244)
T d1pr9a_ 6 AGRRVLVTGAG-KGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP-----GIEPVCVDLGDWEATERALGSVGPVDL 79 (244)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST-----TCEEEECCTTCHHHHHHHHTTCCCCCE
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC-----CCeEEEEeCCCHHHHHHHHHHhCCceE
Confidence 57788877755 677777777653 33589999999998887765442 355666787654211 0 2368998
Q ss_pred EEECC
Q 010971 253 VLLDA 257 (496)
Q Consensus 253 VLlDa 257 (496)
++..|
T Consensus 80 lVnnA 84 (244)
T d1pr9a_ 80 LVNNA 84 (244)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 88765
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=81.82 E-value=5.5 Score=35.55 Aligned_cols=117 Identities=17% Similarity=0.134 Sum_probs=69.0
Q ss_pred ccCCCchHHHHHHHHcCCCc-EEEEEeC-CHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCCcCEEE
Q 010971 185 MAAAPGGKTTYIAALMKNTG-LIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTVDRVL 254 (496)
Q Consensus 185 mcAgpGgKT~~lA~l~~~~g-~V~A~D~-s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~fD~VL 254 (496)
+.-|++|.+..+|..+-..| .|+..|. +...++.+.+.+...|. ++.++..|..+..... ..+..|.++
T Consensus 6 ITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLV 84 (244)
T d1edoa_ 6 VTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGG-QAITFGGDVSKEADVEAMMKTAIDAWGTIDVVV 84 (244)
T ss_dssp ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTC-EEEEEECCTTSHHHHHHHHHHHHHHSSCCSEEE
T ss_pred EeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHHHHHHcCCCCccc
Confidence 44566778888887664444 6776664 78889999999988875 5667788987643211 136899888
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~----~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.+|--...+-+ ...+.++..... .-...+.+.++..+.. +.+|.||..
T Consensus 85 nnAg~~~~~~~-------~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~--~~~G~IVni 136 (244)
T d1edoa_ 85 NNAGITRDTLL-------IRMKKSQWDEVIDLNLTGVFLCTQAATKIMMK--KRKGRIINI 136 (244)
T ss_dssp ECCCCCCCCCG-------GGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH--HTCEEEEEE
T ss_pred cccccccccch-------hccchHHHHHHHhhhhhhHHHHHHHHHHHHHH--cCCcEEEEE
Confidence 76633222222 223333333222 2223345555554421 357888874
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=81.81 E-value=8.9 Score=34.27 Aligned_cols=120 Identities=14% Similarity=0.169 Sum_probs=70.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|..||=.| |.+|.+..+|..+- ....|+.+|.++++++.+.+.+ +- +..++..|..+..... ..+
T Consensus 5 ~gK~alITG-as~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~---~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~g 79 (253)
T d1hxha_ 5 QGKVALVTG-GASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---GE-RSMFVRHDVSSEADWTLVMAAVQRRLG 79 (253)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---CT-TEEEECCCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---CC-CeEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 466777555 45667777776553 3358999999999888776654 43 4556778877642111 126
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHH----HHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY----LQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~----lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
..|.++..|- +....+ ....+.++...... -...+...++..+ .+.||.||..+
T Consensus 80 ~iDilVnnAG-----~~~~~~--~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m---~~~~G~Iv~is 137 (253)
T d1hxha_ 80 TLNVLVNNAG-----ILLPGD--METGRLEDFSRLLKINTESVFIGCQQGIAAM---KETGGSIINMA 137 (253)
T ss_dssp SCCEEEECCC-----CCCCBC--TTTCCHHHHHHHHHHHTHHHHHHHHHHHHHH---TTTCEEEEEEC
T ss_pred CCCeEEeccc-----ccCCCC--cccCCHHHHHHHHHHhhhHHHHHHHHHHHHH---HhcCCceeccc
Confidence 7999988763 222111 22334444433222 2233455666655 25689888764
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=81.79 E-value=3.9 Score=36.76 Aligned_cols=124 Identities=13% Similarity=0.127 Sum_probs=72.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHH-HHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANL-HRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl-~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|.++|=.|++ +|.+..+|..+- ....|+.+|.+.+++..+...+ +..|. ++..+..|..+..... ..
T Consensus 4 ~gK~~lITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (251)
T d1vl8a_ 4 RGRVALVTGGS-RGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGV-ETMAFRCDVSNYEEVKKLLEAVKEKF 81 (251)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCC-cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 36667766655 667777776543 3458999999999998887776 45565 4667788987642110 12
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHH----HHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY----LQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~----lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+..|.++..| | +....| ....+.++...... -...+.+.++..+.. ..+|.+|..+
T Consensus 82 g~iDiLVnnA---G--~~~~~~--~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~--~~~G~Ii~i~ 141 (251)
T d1vl8a_ 82 GKLDTVVNAA---G--INRRHP--AEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRE--SDNPSIINIG 141 (251)
T ss_dssp SCCCEEEECC---C--CCCCCC--GGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CSSCEEEEEC
T ss_pred CCCCEEEECC---C--CCCCCC--hhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccc--cccccccccc
Confidence 6899998855 3 222222 12344454443222 223345555555521 3456776654
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.64 E-value=9.1 Score=33.98 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=44.5
Q ss_pred CCeEeeccCCCchHHHHHHHHc----CCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALM----KNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNEL 241 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~----~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~ 241 (496)
|..+| +.-|++|.+..+|..+ .....|+.++.+..+++.+.+.+...+.. .+.++..|..+.
T Consensus 6 gKval-ITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~ 72 (259)
T d1oaaa_ 6 CAVCV-LTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTE 72 (259)
T ss_dssp SEEEE-ESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSH
T ss_pred CCEEE-EeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCH
Confidence 44444 4445566777777654 23358999999999999999988766543 578888898764
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=81.43 E-value=3.6 Score=36.78 Aligned_cols=118 Identities=17% Similarity=0.177 Sum_probs=69.7
Q ss_pred ccCCCchHHHHHHHHcCCCc--------EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 185 MAAAPGGKTTYIAALMKNTG--------LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 185 mcAgpGgKT~~lA~l~~~~g--------~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
+.-|++|.+..+|..+-..| .|+.++.+..+++.+...+...|. ++.++..|.++..... ..+
T Consensus 6 ITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~g 84 (240)
T d2bd0a1 6 ITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA-LTDTITADISDMADVRRLTTHIVERYG 84 (240)
T ss_dssp EETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTC-EEEEEECCTTSHHHHHHHHHHHHHHTS
T ss_pred EccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 44455667777776553323 489999999999999999988875 4667788887643211 236
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~----~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
..|.++.+|-....+-+ ...+.++..... .-...+...++..+.. +.+|.||..+
T Consensus 85 ~iDilvnnAg~~~~~~~-------~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~--~~~G~Ii~is 143 (240)
T d2bd0a1 85 HIDCLVNNAGVGRFGAL-------SDLTEEDFDYTMNTNLKGTFFLTQALFALMER--QHSGHIFFIT 143 (240)
T ss_dssp CCSEEEECCCCCCCCCG-------GGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH--HTCEEEEEEC
T ss_pred CcceeecccccccCCcc-------ccCCHHHHhhcCCEeehHHHHHHHHHhHHHHh--cCCCceEEEe
Confidence 89998876533222222 223444433322 2223344555554421 3467777654
|