Citrus Sinensis ID: 010975

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490------
Protein Sequence
MAPCAQVHNLDFDIRALTKCLKEGIITSRFIISKFIIGPPHAFFYSFGSPPFQFSLAIQLAGCCSVETERERFFFFLIFILSAISLLLRLSNLSAMADEPMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEITERPVSDGSSLNSNGHVQNTSDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHccEEEEEEEEcEEEccccccccccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccHHHHHccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccccccccccccEEEEEcccccHHHHHHHHHHHHcccEEEEEEcccccccccccHHHHHHHHHHHHHHHcccEEEEEHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccEEEEEEEccccccccHHHHHccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccEEcccccHHHHHHHHHHcccEEEEEEEcccccccccccEEEccccccccccccccccccccccHHHcEEEEEEEEEccccccccHccHHHcccccccccccHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHccccHHHHHHHHHHHHccccccHHHHHHccccccEEEEEccccccHHHHHHHHHHHcccEEEEEccHHHHHHccccHHHHHHHHHHHHHHccccEEEEEcHHHHccccccccccccHHHHHHHHHHHHHcccccccccEEEEEEccccHHHcHHHHHHHHcEEEcccccHHHHHHHHHHHcccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHcccHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHccHccc
Coil and Loop (DISEMBL)
mapcaqvhnlDFDIRALTKCLKEGIITSRFIIskfiigpphaffysfgsppfqFSLAIQLAGCCSVETERERFFFFLIFILSAISLLLRLsnlsamadepmptrwtfqdfkmfydakfgrkkikepekgeiterpvsdgsslnsnghvqntsDMAVYEQYrtqgsgstclNGVLANVINerlqkpllpnfdsaETRALAESLCRDIirgspdvkwesIKGLENAKRLLKEAVVmpikypkyftgllspwkgillfgppgtgkTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELArhhapstifLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRilvplpdtEARRAMFEsllpsqtgeeslpydllvertegysgsdirlVSKEAAMQPLRRLMVLLEgrqevapddelpqigpirpeDVEIALkntrpsahlHAHRYEKFNADYGSEILQ
Flexible Loop (DISEMBL)
mapcaqvhnldFDIRALTKCLKEGIITSRFIISKFIIGPPHAFFYSFGSPPFQFSLAIQLAGCCSVETERERFFFFLIFILSAISLLLRLSNLSAMADEPMPTRWTFQDFKMFYDAKfgrkkikepekgeiterpvsdgsslnsnGHVQNTSDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIrgspdvkwesikGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTffnisassvvskwrgdSEKLIKVLFELARhhapstiflDEIDAIISQRgearseheasRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFEsllpsqtgeeslPYDLLVERTegysgsdirlvSKEAAMQPLRRLMVLLEGRQevapddelpqigpiRPEDVEIALKNTrpsahlhahryekfnadygseilq
Low Complexity Region (SEG)
MAPCAQVHNLDFDIRALTKCLKEGIITSRFIISKFIIGPPHAFFYSFGSPPFQFSLAIQLAGCCSVETERERfffflifilsaislllrlsnlsAMADEPMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEITERPVSDGSSLNSNGHVQNTSDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ
Disordered region (IsUnstruct)
****AQVHNLDFDIRALTKCLKEGIITSRFIISKFIIGPPHAFFYSFGSPPFQFSLAIQLAGCCSVETERERFFFFLIFILSAISLLLRLSNLSAMADEPMPTRWTFQDFKMFYDAKFG************************************VYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS****************TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPD**********************YDLLVERTEGYSGSDIRLV*******PLRRLMVLL******************************************************
Disordered Region (DISOPRED)
*****QVHNLDFDIRALTKCLKEGIITSRFIISKFIIGPPHAFFYSFGSP***F********************FFLIFIL*************************FQDF***************************************************************************************LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA*******************TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV******************PIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSE***
Disordered Region (DISEMBL)
MAPCAQVHNLDFDIRALTKCLKEGIITSRFIISKFIIGPPHAFFYSFGSPPFQFSLAIQLAGCCSVETERERFFFFLIFILSAISLLLRLSNLSAMADEPMPTRWTFQDFKMFYDAKFGRKKIKEPEK*************LNSNGHVQNTSDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ***********RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ
Disordered Region (DISPRO)
*APCAQVHNLDFDIRALTKCLKEGIITSRFIISKFIIGPPHAFFYSFGSPPFQFSLAIQLAGCCSVETERERFFFFLIFILSAISLLLR*SNLSAMADEPMPTRWTFQDFKMFYDA****************************************************************RLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ********EASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGS*I**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAPCAQVHNLDFDIRALTKCLKEGIITSRFIISKFIIGPPHAFFYSFGSPPFQFSLAIQLAGCCSVETERERFFFFLIFILSAISLLLRLSNLSAMADEPMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEITERPVSDGSSLNSNGHVQNTSDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	496	2.2.26 [Sep-21-2011]
Q8IYT4	538	Katanin p60 ATPase-contai	yes	no	0.633	0.583	0.583	1e-100
A0JMA9	542	Katanin p60 ATPase-contai	yes	no	0.633	0.579	0.580	2e-99
Q9D3R6	539	Katanin p60 ATPase-contai	yes	no	0.620	0.571	0.583	6e-99
Q3B8D5	505	Katanin p60 ATPase-contai	N/A	no	0.556	0.546	0.504	5e-78
Q5RII9	485	Katanin p60 ATPase-contai	no	no	0.604	0.618	0.491	4e-77
Q5XIK7	488	Katanin p60 ATPase-contai	no	no	0.612	0.622	0.480	3e-76
Q0IIR9	492	Katanin p60 ATPase-contai	no	no	0.590	0.595	0.486	6e-76
Q9SEX2	523	Katanin p60 ATPase-contai	no	no	0.588	0.558	0.468	8e-76
Q8K0T4	488	Katanin p60 ATPase-contai	yes	no	0.661	0.672	0.448	9e-76
Q9BW62	490	Katanin p60 ATPase-contai	no	no	0.612	0.620	0.480	1e-75

>sp|Q8IYT4|KATL2_HUMAN Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens GN=KATNAL2 PE=1 SV=3

 Score =  365 bits (938), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/322 (58%), Positives = 239/322 (74%), Gaps = 8/322 (2%)

Query: 179 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 237
           +ERL KPL      ++E R LA  + RDI   +P++KW  I GL+ AK+L+KEAVV PI+
Sbjct: 216 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 275

Query: 238 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 297
           YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 276 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 335

Query: 298 KVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVF 356
           +VLFELAR+HAPSTIFLDE+++++SQRG A   EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 336 RVLFELARYHAPSTIFLDELESVMSQRGTASGGEHEGSLRMKTELLVQMDGLARSEDLVF 395

Query: 357 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES------LPYDL 410
           VLAA+NLPWELD AMLRRLEKRILV LP  EAR+AM    LP  +   +      L Y +
Sbjct: 396 VLAASNLPWELDCAMLRRLEKRILVDLPSREARQAMIYHWLPPVSKSRALELHTELEYSV 455

Query: 411 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 470
           L + TEGYSGSDI+LV +EAAM+P+R++   LE  Q  + D    Q+  +   D    L 
Sbjct: 456 LSQETEGYSGSDIKLVCREAAMRPVRKIFDALENHQSESSDLPRIQLDIVTTADFLDVLT 515

Query: 471 NTRPSAHLHAHRYEKFNADYGS 492
           +T+PSA   A RY  +  ++ S
Sbjct: 516 HTKPSAKNLAQRYSDWQREFES 537

Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 3

>sp|A0JMA9|KATL2_XENTR Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1

 Score =  363 bits (931), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 187/322 (58%), Positives = 238/322 (73%), Gaps = 8/322 (2%)

Query: 179 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 237
           +ERL KP+      ++E R LA  + RDI   +P+V+W+ I GL+ AKRL+KEAVV PI+
Sbjct: 220 SERLIKPVGAFIGGNSEMRELAAVISRDIYLQNPNVRWDDIIGLDAAKRLVKEAVVYPIR 279

Query: 238 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 297
           YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATEC TTFFNISAS++VSKWRGDSEKL+
Sbjct: 280 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLV 339

Query: 298 KVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVF 356
           +VLFELAR+HAPSTIFLDE+++++SQRG     EHE SRR+KTELL+QMDGL +SD+LVF
Sbjct: 340 RVLFELARYHAPSTIFLDELESVMSQRGTGPGGEHEGSRRMKTELLVQMDGLARSDDLVF 399

Query: 357 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP---SQTGEE---SLPYDL 410
           VLAA+NLPWELD AMLRRLEKRILV LP  EAR+AM +  LP   + +G E    L Y  
Sbjct: 400 VLAASNLPWELDYAMLRRLEKRILVDLPSKEARQAMIQHWLPPVSNSSGVELRTDLDYST 459

Query: 411 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 470
           L   T+GYSGSDIRLV KEAAM+P+R++   LE       +  +  +  +   D    L 
Sbjct: 460 LGAETDGYSGSDIRLVCKEAAMRPVRKIFDALENHHSEHKNLPVISLDTVTTSDFLEVLA 519

Query: 471 NTRPSAHLHAHRYEKFNADYGS 492
           +T+PSA   A +Y  +  ++ S
Sbjct: 520 HTKPSAKSLAEKYAAWQKEFES 541

Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|Q9D3R6|KATL2_MOUSE Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus GN=Katnal2 PE=2 SV=2

 Score =  361 bits (927), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 189/324 (58%), Positives = 241/324 (74%), Gaps = 16/324 (4%)

Query: 179 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 237
           +ERL KPL      ++E R LA  + RDI   +P++KW  I GL+ AK+L+KEAVV PI+
Sbjct: 217 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 276

Query: 238 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 297
           YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 277 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 336

Query: 298 KVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVF 356
           +VLFELAR+HAPSTIFLDE+++++SQRG     EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 337 RVLFELARYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELLVQMDGLARSEDLVF 396

Query: 357 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES------LPYDL 410
           VLAA+NLPWELD AMLRRLEKRILV LP  EAR+AM    LP  +   +      L Y +
Sbjct: 397 VLAASNLPWELDCAMLRRLEKRILVDLPSQEARQAMIYHWLPPVSKNHALELHTQLEYSV 456

Query: 411 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP--QIGPIRPEDVEIA 468
           L + TEGYSGSDI+LV +EAAM+P+R++  +LE  Q  +  + LP  Q+  +  +D    
Sbjct: 457 LSQETEGYSGSDIKLVCREAAMRPVRKIFSVLENNQ--SESNNLPGIQLDTVTTQDFLDV 514

Query: 469 LKNTRPSAHLHAHRY----EKFNA 488
           L +T+PSA     RY    EKF +
Sbjct: 515 LAHTKPSAKNLTERYLAWQEKFES 538

Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|Q3B8D5|KATL2_XENLA Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus laevis GN=katnal2 PE=2 SV=1

 Score =  292 bits (747), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 163/323 (50%), Positives = 208/323 (64%), Gaps = 47/323 (14%)

Query: 179 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 237
           +ERL KP+      ++E R LA  + RDI   +P+V+W+ I GL+ AKRL+KEAVV PI+
Sbjct: 220 SERLIKPVGAFIGGNSEMRELAAVISRDIYLQNPNVRWDDIIGLDAAKRLVKEAVVYPIR 279

Query: 238 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 297
           YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATEC TTFFNISAS++VSKWRGDSEKL+
Sbjct: 280 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLV 339

Query: 298 KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 357
           +VLFELAR+HAPSTIFLDE+++++SQRG                                
Sbjct: 340 RVLFELARYHAPSTIFLDELESVMSQRGTG------------------------------ 369

Query: 358 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP---SQTGEE---SLPYDLL 411
                 P ELD AMLRRLEKRILV LP  EAR+AM +  LP   + +G E    L Y  L
Sbjct: 370 ------PGELDYAMLRRLEKRILVDLPSKEARQAMIQHWLPPISNSSGVELRMDLDYSTL 423

Query: 412 VERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIG--PIRPEDVEIAL 469
            E T+GYSGSDIRLV KEAAM+P+R++   LE     +   +LP I    +   D    L
Sbjct: 424 GEETDGYSGSDIRLVCKEAAMRPVRKIFDALENHH--SEHKKLPVISLETVTTSDFSEVL 481

Query: 470 KNTRPSAHLHAHRYEKFNADYGS 492
            +T+PSA   A +Y  +  ++ S
Sbjct: 482 AHTKPSAKSLAEKYSAWQNEFES 504

Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|Q5RII9|KTNA1_DANRE Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1

 Score =  289 bits (739), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 153/311 (49%), Positives = 214/311 (68%), Gaps = 11/311 (3%)

Query: 190 FD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSP 248
           FD   E + L ++L RDII  +P+V W+ I  LE AK+LLKEAVV+P+  P++F G+  P
Sbjct: 177 FDRGGEDKDLIDALERDIISQNPNVTWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIRRP 236

Query: 249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHA 308
           WKG+L+ GPPGTGKT+LAKAVATEC+TTFFN+S+S++ SK+RG+SEKL+++LFE+AR +A
Sbjct: 237 WKGVLMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYA 296

Query: 309 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE-----LVFVLAATNL 363
           P+TIF+DEID+I S+RG +  EHEASRR+K ELL+QMDG+  + E     +V VLAATN 
Sbjct: 297 PTTIFIDEIDSICSRRGTS-EEHEASRRVKAELLVQMDGVGGTSENDPSKMVMVLAATNF 355

Query: 364 PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDI 423
           PW++D A+ RRLEKRI +PLP  + R  + +  L        +  D + E+ EGYSG+DI
Sbjct: 356 PWDIDEALRRRLEKRIYIPLPSAKGRVDLLKINLKELDLANDVNMDKIAEQMEGYSGADI 415

Query: 424 RLVSKEAAMQPLRRLMVLLEGRQ-EVAPDDELPQIGPIRPEDVEIALKNTRPS-AHLHAH 481
             V ++A++  +RR +  L   +    P DE+    P   ED E ALK    S +     
Sbjct: 416 TNVCRDASLMAMRRRIEGLTPEEIRNLPKDEMHM--PTTMEDFETALKKVSKSVSAADLE 473

Query: 482 RYEKFNADYGS 492
           +YEK+ A++GS
Sbjct: 474 KYEKWIAEFGS 484

Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays, such as that seen during disassembly of interphase microtubules at the G2-M transition. May also be required for microtubule release from the centrosome after nucleation. In mitotic spindles this could allow depolymerization of the microtubule end proximal to the centrosome, and subsequent poleward microtubule flux.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|Q5XIK7|KATL1_RAT Katanin p60 ATPase-containing subunit A-like 1 OS=Rattus norvegicus GN=Katnal1 PE=2 SV=1

 Score =  286 bits (732), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 151/314 (48%), Positives = 217/314 (69%), Gaps = 10/314 (3%)

Query: 187 LPNFDSAE-TRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL 245
           +P FD A   + L E+L RDI+  +P + W+ I  LE AK+LL+EAVV+P+  P +F G+
Sbjct: 176 IPKFDGAGYDKDLVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGI 235

Query: 246 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELAR 305
             PWKG+L+ GPPGTGKTMLAKAVATEC TTFFN+S+S++ SK+RG+SEKL+++LFE+AR
Sbjct: 236 RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMAR 295

Query: 306 HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE------LVFVLA 359
            +AP+TIF+DEID+I S+RG +  EHEASRR+K+ELLIQMDG+  + E      +V VLA
Sbjct: 296 FYAPTTIFIDEIDSICSRRGTS-DEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLA 354

Query: 360 ATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 419
           ATN PW++D A+ RRLEKRI +PLP  + R  + +  L     +  +  + + E+TEGYS
Sbjct: 355 ATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDIHLEDIAEKTEGYS 414

Query: 420 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS-AHL 478
           G+DI  + ++A++  +RR +  L   +  A   E  Q+ P+   D+E+ALK    S +  
Sbjct: 415 GADITNICRDASLMAMRRRINGLSPEEIRALSKEELQM-PVTRGDLELALKKIAKSVSAA 473

Query: 479 HAHRYEKFNADYGS 492
              +YEK+  ++GS
Sbjct: 474 DLEKYEKWMVEFGS 487

Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|Q0IIR9|KTNA1_XENTR Katanin p60 ATPase-containing subunit A1 OS=Xenopus tropicalis GN=katna1 PE=2 SV=1

 Score =  285 bits (729), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 149/306 (48%), Positives = 211/306 (68%), Gaps = 13/306 (4%)

Query: 196 RALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLF 255
           + L E+L RDII  +P+++W+ I  LE AK+LLKEAVV+P+  P++F G+  PWKG+L+ 
Sbjct: 190 KDLIEALERDIISQNPNIRWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMV 249

Query: 256 GPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLD 315
           GPPGTGKT+LAKAVATECKTTFFNIS+S++ SK+RG+SEKL+++LFE+AR +AP+TIF+D
Sbjct: 250 GPPGTGKTLLAKAVATECKTTFFNISSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFID 309

Query: 316 EIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE------LVFVLAATNLPWELDA 369
           EID+I S+RG +  EHEASRR+K ELL+QMDG+  + E      +V VLAATN PW++D 
Sbjct: 310 EIDSICSRRGTS-EEHEASRRVKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDE 368

Query: 370 AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKE 429
           A+ RRLEKRI +PLP  + R  +    L      + +  + + E  +GYSG+DI  V ++
Sbjct: 369 ALRRRLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRD 428

Query: 430 AAMQPLRRLMVLL--EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKF 486
           A++  +RR +  L  E  + ++ DD      P   ED E+ALK    S       +YEK+
Sbjct: 429 ASLMAMRRRIEGLTPEEIRNLSRDD---MHMPTTMEDFEMALKKVSKSVSASDIEKYEKW 485

Query: 487 NADYGS 492
             ++GS
Sbjct: 486 IEEFGS 491

Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|Q9SEX2|KTNA1_ARATH Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1

 Score =  285 bits (728), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 143/305 (46%), Positives = 214/305 (70%), Gaps = 13/305 (4%)

Query: 198 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGP 257
           LA  L RD++  +P V+W+ + GL  AKRLL+EAVV+P+  P+YF G+  PWKG+L+FGP
Sbjct: 221 LAAMLERDVLDSTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGP 280

Query: 258 PGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEI 317
           PGTGKT+LAKAVATEC TTFFN+S++++ SKWRG+SE++++ LF+LAR +APSTIF+DEI
Sbjct: 281 PGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEI 340

Query: 318 DAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLAATNLPWELDAA 370
           D++ + RG    EHE+SRR+K+ELL+Q+DG++        S ++V VLAATN PW++D A
Sbjct: 341 DSLCNSRG-GSGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEA 399

Query: 371 MLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEA 430
           + RRLEKRI +PLPD E+R+A+    L +      +  + +  RTEGYSG D+  V ++A
Sbjct: 400 LRRRLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCRDA 459

Query: 431 AMQPLRRLMVLLEGRQEVA--PDDELPQIGPIRPEDVEIALKNTRPS-AHLHAHRYEKFN 487
           +M  +RR  +  + R E+     D++    P+   D E A++  +PS +     ++EK+ 
Sbjct: 460 SMNGMRR-KIAGKTRDEIKNMSKDDISN-DPVAMCDFEEAIRKVQPSVSSSDIEKHEKWL 517

Query: 488 ADYGS 492
           +++GS
Sbjct: 518 SEFGS 522

Severs microtubules in an ATP-dependent manner. May be required for reorientation of cortical microtubule arrays during cellular elongation. Failure to correctly orient these arrays drastically compromises fiber length, cell wall thickness and mechanical strength. May also be required for the spatial organization of developmental cues within the root.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|Q8K0T4|KATL1_MOUSE Katanin p60 ATPase-containing subunit A-like 1 OS=Mus musculus GN=Katnal1 PE=1 SV=1

 Score =  284 bits (727), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 154/343 (44%), Positives = 224/343 (65%), Gaps = 15/343 (4%)

Query: 158 EQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAE-TRALAESLCRDIIRGSPDVKWE 216
           + YR +G        V     +  +     P FD A   + L E+L RDI+  +P + W+
Sbjct: 152 KDYRARGRDDKARKNVQDGASDSEI-----PKFDGAGYDKDLVEALERDIVSRNPSIHWD 206

Query: 217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT 276
            I  LE AK+LL+EAVV+P+  P +F G+  PWKG+L+ GPPGTGKTMLAKAVATEC TT
Sbjct: 207 DIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT 266

Query: 277 FFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRR 336
           FFN+S+S++ SK+RG+SEKL+++LFE+AR +AP+TIF+DEID+I S+RG +  EHEASRR
Sbjct: 267 FFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTS-DEHEASRR 325

Query: 337 LKTELLIQMDGLTQSDE------LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARR 390
           +K+ELLIQMDG+  + E      +V VLAATN PW++D A+ RRLEKRI +PLP  + R 
Sbjct: 326 VKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRA 385

Query: 391 AMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAP 450
            + +  L     +  +  + + ++TEGYSG+DI  + ++A++  +RR +  L   +  A 
Sbjct: 386 ELLKISLREVELDPDVHLEDIADKTEGYSGADITNICRDASLMAMRRRINGLSPEEIRAL 445

Query: 451 DDELPQIGPIRPEDVEIALKNTRPS-AHLHAHRYEKFNADYGS 492
             E  Q+ P+   D+E+ALK    S +     +YEK+  ++GS
Sbjct: 446 SKEELQM-PVTRGDLELALKKIAKSVSAADLEKYEKWMVEFGS 487

Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|Q9BW62|KATL1_HUMAN Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens GN=KATNAL1 PE=1 SV=1

 Score =  284 bits (727), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 151/314 (48%), Positives = 215/314 (68%), Gaps = 10/314 (3%)

Query: 187 LPNFDSAE-TRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL 245
           +P FD A   + L E+L RDI+  +P + W+ I  LE AK+LL+EAVV+P+  P +F G+
Sbjct: 178 MPKFDGAGYDKDLVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGI 237

Query: 246 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELAR 305
             PWKG+L+ GPPGTGKTMLAKAVATEC TTFFN+S+S++ SK+RG+SEKL+++LFE+AR
Sbjct: 238 RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMAR 297

Query: 306 HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE------LVFVLA 359
            +AP+TIF+DEID+I S+RG +  EHEASRR+K+ELLIQMDG+  + E      +V VLA
Sbjct: 298 FYAPTTIFIDEIDSICSRRGTS-DEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLA 356

Query: 360 ATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 419
           ATN PW++D A+ RRLEKRI +PLP  + R  + +  L     +  +  + + E+ EGYS
Sbjct: 357 ATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYS 416

Query: 420 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS-AHL 478
           G+DI  V ++A++  +RR +  L   +  A   E  Q+ P+   D E+ALK    S +  
Sbjct: 417 GADITNVCRDASLMAMRRRINGLSPEEIRALSKEELQM-PVTKGDFELALKKIAKSVSAA 475

Query: 479 HAHRYEKFNADYGS 492
              +YEK+  ++GS
Sbjct: 476 DLEKYEKWMVEFGS 489

Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
255557305	408	Katanin p60 ATPase-containing subunit, p	0.806	0.980	0.819	0.0
359483871	406	PREDICTED: katanin p60 ATPase-containing	0.804	0.982	0.803	0.0
388503432	404	unknown [Lotus japonicus]	0.804	0.987	0.790	0.0
356512187	403	PREDICTED: katanin p60 ATPase-containing	0.804	0.990	0.785	0.0
356524963	405	PREDICTED: katanin p60 ATPase-containing	0.804	0.985	0.778	0.0
297740706	397	unnamed protein product [Vitis vinifera]	0.786	0.982	0.784	0.0
224078976	384	predicted protein [Populus trichocarpa]	0.762	0.984	0.791	0.0
357476445	402	Katanin p60 ATPase-containing subunit A-	0.808	0.997	0.753	1e-176
56201862	410	vacuolar protein sorting factor 4B-like	0.794	0.960	0.725	1e-167
357135895	403	PREDICTED: katanin p60 ATPase-containing	0.802	0.987	0.730	1e-167

>gi|255557305|ref|XP_002519683.1| Katanin p60 ATPase-containing subunit, putative [Ricinus communis] gi|223541100|gb|EEF42656.1| Katanin p60 ATPase-containing subunit, putative [Ricinus communis]

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/409 (81%), Positives = 363/409 (88%), Gaps = 9/409 (2%)

Query: 96  MADEPMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEITERPVSDG--------SSLNSNGH 147
           MADEP  TRW+FQDFK+FYDAKFGRKK+ E + G +    V++G        ++ N NGH
Sbjct: 1   MADEPSVTRWSFQDFKLFYDAKFGRKKMSETQNG-VAGPAVANGIGNSSTSNATSNGNGH 59

Query: 148 VQNTSDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDII 207
           V+NTSDMA+YEQYR Q   S   NGVL N I++R QK LLP FDSAETRALAE LCRDI+
Sbjct: 60  VKNTSDMAIYEQYRNQDRSSNHSNGVLPNGIDDRPQKSLLPAFDSAETRALAEGLCRDIV 119

Query: 208 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAK 267
           RG+PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAK
Sbjct: 120 RGNPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAK 179

Query: 268 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 327
           AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIF+DEIDAIISQRGE 
Sbjct: 180 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFIDEIDAIISQRGEG 239

Query: 328 RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTE 387
           RSEHEASRRLKTELLIQMDGLT+++ELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ E
Sbjct: 240 RSEHEASRRLKTELLIQMDGLTRTEELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPE 299

Query: 388 ARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 447
           ARRAM+E LLP Q  E+ LPYDLLVERTEG+SGSDIRL+ KEAAMQPLRRLM LLE RQE
Sbjct: 300 ARRAMYEELLPPQPDEDKLPYDLLVERTEGFSGSDIRLLCKEAAMQPLRRLMALLEDRQE 359

Query: 448 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 496
           V PDDELP++GPI PED+E ALKNTRPSAHLHAHRYEKFNADYGS+ILQ
Sbjct: 360 VVPDDELPKVGPITPEDIETALKNTRPSAHLHAHRYEKFNADYGSQILQ 408

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483871|ref|XP_002276286.2| PREDICTED: katanin p60 ATPase-containing subunit A-like 2 [Vitis vinifera]

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/408 (80%), Positives = 362/408 (88%), Gaps = 9/408 (2%)

Query: 96  MADEPMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEITE---RPVSDGSS----LNSNGHV 148
           MADEP  TRW+FQDFKMFYD KFGRKK  EPEK +  E   +PVS+G+S     N  GHV
Sbjct: 1   MADEPFLTRWSFQDFKMFYDVKFGRKK--EPEKHDAAESSGKPVSNGNSSNGTANGGGHV 58

Query: 149 QNTSDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIR 208
           +NTSD+A+YEQYRTQ  GS   NGVL++  +E+ QK LLP+F+SA+ RAL ESL RDIIR
Sbjct: 59  KNTSDLAIYEQYRTQERGSANGNGVLSDRYDEKPQKSLLPSFESADMRALGESLSRDIIR 118

Query: 209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKA 268
           GSPDVKW+SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKA
Sbjct: 119 GSPDVKWDSIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKA 178

Query: 269 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 328
           VATECKTTFFNISASSVVSKWRGDSEKL+KVLFELARHHAPSTIFLDEIDA+ISQRGE R
Sbjct: 179 VATECKTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDALISQRGEGR 238

Query: 329 SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEA 388
           SEHEASRRLKTELL+QMDGLT++DELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ EA
Sbjct: 239 SEHEASRRLKTELLVQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEA 298

Query: 389 RRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEV 448
           RRAMFE LLPS  GEE LPYDL+VERTEGYSGSDIRL+ KEAAMQPLRRLM  LE + EV
Sbjct: 299 RRAMFEELLPSVPGEEKLPYDLMVERTEGYSGSDIRLLCKEAAMQPLRRLMAHLEDKAEV 358

Query: 449 APDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 496
            P++ELP++GPI+ +D+E ALKNTRPSAHLH HRY+KFN DYGS+ILQ
Sbjct: 359 VPEEELPKVGPIKHDDIETALKNTRPSAHLHVHRYDKFNTDYGSQILQ 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503432|gb|AFK39782.1| unknown [Lotus japonicus]

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/406 (79%), Positives = 358/406 (88%), Gaps = 7/406 (1%)

Query: 96  MADE-PMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEITERPVSDGSSL----NSNGHVQN 150
           MADE PMPTRW+FQDFK++YD+KFGRKK+ +   GE  ++ V +GSS+    N N H + 
Sbjct: 1   MADEEPMPTRWSFQDFKLYYDSKFGRKKVVQ--NGENADKAVGNGSSMSVVSNGNVHSKR 58

Query: 151 TSDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGS 210
           +SDMA+YEQ R+QG      N V  N ++ER QK LLP F+SAE R LAESL RDIIRGS
Sbjct: 59  SSDMAIYEQLRSQGQNGIHTNDVSPNNMDERPQKSLLPPFESAEMRTLAESLSRDIIRGS 118

Query: 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVA 270
           PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVA
Sbjct: 119 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVA 178

Query: 271 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 330
           TECKTTFFNISASSVVSKWRGDSEKL+KVLF+LARHHAPSTIFLDEIDAIISQRGEARSE
Sbjct: 179 TECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDAIISQRGEARSE 238

Query: 331 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARR 390
           HEASRRLKTELLIQMDGLT++DELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ EAR 
Sbjct: 239 HEASRRLKTELLIQMDGLTRTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARV 298

Query: 391 AMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAP 450
           AMFE LLP Q  EES+PYDLLV +TEGYSGSDIRL+ KE AMQPLRRLM  LE R+++ P
Sbjct: 299 AMFEELLPPQPDEESIPYDLLVNQTEGYSGSDIRLLCKEVAMQPLRRLMSQLEQREDLVP 358

Query: 451 DDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 496
           ++ELP++GPIRPED++ ALKNTRPSAHLHAH+Y+KFNADYGS+ILQ
Sbjct: 359 EEELPKVGPIRPEDIQAALKNTRPSAHLHAHKYDKFNADYGSQILQ 404

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512187|ref|XP_003524802.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 2-like [Glycine max]

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/405 (78%), Positives = 358/405 (88%), Gaps = 6/405 (1%)

Query: 96  MADEPMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEITERPVSDGSSLN----SNGHVQNT 151
           MAD+PMPTRW+FQDFK++YDAKFGRKK+ E      T++ VS+G+S+     SNG+ +  
Sbjct: 1   MADDPMPTRWSFQDFKLYYDAKFGRKKVAE-NGDTATDKAVSNGNSVTVTIVSNGN-KRA 58

Query: 152 SDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSP 211
           S+MAVYEQ+R +G      NG +  +++ER QK LLP F+SAE RALAESL RDIIRGSP
Sbjct: 59  SEMAVYEQFRGEGLNQIHTNGFVPTIVDERPQKSLLPPFESAEMRALAESLSRDIIRGSP 118

Query: 212 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT 271
           DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT
Sbjct: 119 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT 178

Query: 272 ECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEH 331
           ECKTTFFNISASSVVSKWRGDSEKL+KVLFELARHHAPSTIFLDEIDAIISQRGEARSEH
Sbjct: 179 ECKTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEH 238

Query: 332 EASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRA 391
           EASRRLKTELLIQMDGLT++DELVFVLAATNLPWELDAAMLRRLEKRILVPLP+  ARRA
Sbjct: 239 EASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPVARRA 298

Query: 392 MFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPD 451
           MFE LLP Q  EE +PYD+LV++TEGYSGSDIRL+ KE AMQPLRRLM  LE  Q+V P+
Sbjct: 299 MFEELLPQQPDEEPIPYDILVDKTEGYSGSDIRLLCKETAMQPLRRLMSQLEQSQDVVPE 358

Query: 452 DELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 496
           +ELP++GPI+ ED+E AL+NTRPSAHLHAH+Y+KFNADYGS+ILQ
Sbjct: 359 EELPKVGPIKSEDIETALRNTRPSAHLHAHKYDKFNADYGSQILQ 403

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524963|ref|XP_003531097.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 2-like [Glycine max]

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/407 (77%), Positives = 356/407 (87%), Gaps = 8/407 (1%)

Query: 96  MADEPMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEITERPVSDGS------SLNSNGHVQ 149
           MAD+PMPTRW+FQDFK+ YDAKFGRKK+ E    +   + VS+G+      ++ SNG+ +
Sbjct: 1   MADDPMPTRWSFQDFKLCYDAKFGRKKVAE-NGDDAAGKAVSNGNGNSVTVAIVSNGN-K 58

Query: 150 NTSDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRG 209
             S+MAVYEQ+R++G      NG +  + +ER QK LLP F+SAE RALAESL RDIIRG
Sbjct: 59  RASEMAVYEQFRSEGQNQIHTNGFVPTLTDERPQKSLLPPFESAEMRALAESLSRDIIRG 118

Query: 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV 269
           SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV
Sbjct: 119 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV 178

Query: 270 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 329
           ATEC TTFFNISASSVVSKWRGDSEKL+KVLFELARHHAPSTIFLDEIDAIISQRGEARS
Sbjct: 179 ATECNTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARS 238

Query: 330 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEAR 389
           EHEASRRLKTELLIQMDGLT++DELVFVLAATNLPWELDAAMLRRLEKRILVPLP+  AR
Sbjct: 239 EHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPVAR 298

Query: 390 RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA 449
           RAMFE LLP Q GEES+PYD+L ++TEGYSGSDIRL+ KE AMQPLRRLM  LE  Q+V 
Sbjct: 299 RAMFEELLPQQPGEESIPYDILEDKTEGYSGSDIRLLCKETAMQPLRRLMSQLEQNQDVV 358

Query: 450 PDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 496
           P++ELP++GPIR ED+E AL+NTRPSAHLHAH+Y+KFNADYGS+ILQ
Sbjct: 359 PEEELPKVGPIRSEDIETALRNTRPSAHLHAHKYDKFNADYGSQILQ 405

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740706|emb|CBI30888.3| unnamed protein product [Vitis vinifera]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/408 (78%), Positives = 354/408 (86%), Gaps = 18/408 (4%)

Query: 96  MADEPMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEITE---RPVSDGSS----LNSNGHV 148
           MADEP  TRW+FQ         FGRKK  EPEK +  E   +PVS+G+S     N  GHV
Sbjct: 1   MADEPFLTRWSFQ---------FGRKK--EPEKHDAAESSGKPVSNGNSSNGTANGGGHV 49

Query: 149 QNTSDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIR 208
           +NTSD+A+YEQYRTQ  GS   NGVL++  +E+ QK LLP+F+SA+ RAL ESL RDIIR
Sbjct: 50  KNTSDLAIYEQYRTQERGSANGNGVLSDRYDEKPQKSLLPSFESADMRALGESLSRDIIR 109

Query: 209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKA 268
           GSPDVKW+SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKA
Sbjct: 110 GSPDVKWDSIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKA 169

Query: 269 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 328
           VATECKTTFFNISASSVVSKWRGDSEKL+KVLFELARHHAPSTIFLDEIDA+ISQRGE R
Sbjct: 170 VATECKTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDALISQRGEGR 229

Query: 329 SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEA 388
           SEHEASRRLKTELL+QMDGLT++DELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ EA
Sbjct: 230 SEHEASRRLKTELLVQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEA 289

Query: 389 RRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEV 448
           RRAMFE LLPS  GEE LPYDL+VERTEGYSGSDIRL+ KEAAMQPLRRLM  LE + EV
Sbjct: 290 RRAMFEELLPSVPGEEKLPYDLMVERTEGYSGSDIRLLCKEAAMQPLRRLMAHLEDKAEV 349

Query: 449 APDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 496
            P++ELP++GPI+ +D+E ALKNTRPSAHLH HRY+KFN DYGS+ILQ
Sbjct: 350 VPEEELPKVGPIKHDDIETALKNTRPSAHLHVHRYDKFNTDYGSQILQ 397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078976|ref|XP_002305703.1| predicted protein [Populus trichocarpa] gi|222848667|gb|EEE86214.1| predicted protein [Populus trichocarpa]

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/407 (79%), Positives = 342/407 (84%), Gaps = 29/407 (7%)

Query: 96  MADEPMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEITERPVSDGS------SLNSNGHVQ 149
           MADEP  TRW+FQDFK FYD KFGRKK       E      S  +      + N NGHV 
Sbjct: 1   MADEPSVTRWSFQDFKTFYDGKFGRKKAAAAAAAEAEAASDSQQNGQTTVVASNGNGHVN 60

Query: 150 NTSDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRG 209
           N+SDMA+YEQ                       +K LLP FDSAETRALAESLCRDIIRG
Sbjct: 61  NSSDMAIYEQ-----------------------KKSLLPAFDSAETRALAESLCRDIIRG 97

Query: 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV 269
           SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV
Sbjct: 98  SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV 157

Query: 270 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 329
           ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS
Sbjct: 158 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 217

Query: 330 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEAR 389
           EHEASRRLKTELLIQMDGLT+++ELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ EAR
Sbjct: 218 EHEASRRLKTELLIQMDGLTRTNELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEAR 277

Query: 390 RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA 449
            AMFE LLPSQ  EE LPYDLLVERTEG+SGSDIRL+ KEAAMQPLRR+M LLE  +EV 
Sbjct: 278 AAMFEELLPSQPDEEKLPYDLLVERTEGFSGSDIRLLCKEAAMQPLRRIMTLLEDTEEVV 337

Query: 450 PDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 496
           P+DELP++GPIRPED+E ALKNTRPSAHLHAHRY+KFNADYGS+ILQ
Sbjct: 338 PEDELPKVGPIRPEDIETALKNTRPSAHLHAHRYDKFNADYGSQILQ 384

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476445|ref|XP_003608508.1| Katanin p60 ATPase-containing subunit A-like protein [Medicago truncatula] gi|355509563|gb|AES90705.1| Katanin p60 ATPase-containing subunit A-like protein [Medicago truncatula]

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 303/402 (75%), Positives = 344/402 (85%), Gaps = 1/402 (0%)

Query: 95  AMADEPMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEITERPVSDGSSLNSNGHVQNTSDM 154
           A  DEPMPTRW+F++FK +YD + GRKK+ E  +  ++    S G + N N H + TSD 
Sbjct: 2   AADDEPMPTRWSFEEFKKYYDVRLGRKKLVENGENAVSNG-NSSGIASNGNSHGKVTSDR 60

Query: 155 AVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVK 214
           A+Y+Q+++QG   T  NG   N ++E+ +K LLP F+SAE R LAESL RDIIRGSP+VK
Sbjct: 61  AIYDQFQSQGQNPTHTNGFGPNGVDEKPKKSLLPPFESAEMRTLAESLSRDIIRGSPNVK 120

Query: 215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 274
           WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 
Sbjct: 121 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECN 180

Query: 275 TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEAS 334
           TTFFNISASS+VSKWRGDSEKL+KVLFELARHHAP+TIFLDEIDAIISQRGE RSEHEAS
Sbjct: 181 TTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQRGEGRSEHEAS 240

Query: 335 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFE 394
           RRLKTELLIQMDGL ++DELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ EARRAMFE
Sbjct: 241 RRLKTELLIQMDGLARTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARRAMFE 300

Query: 395 SLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDEL 454
            LLP Q  EE +PYDLLV+RTEGYSGSDIRL+ KE AMQPLRRLM  LE   +V P++EL
Sbjct: 301 ELLPLQPDEEPMPYDLLVDRTEGYSGSDIRLLCKETAMQPLRRLMTQLEQEPDVVPEEEL 360

Query: 455 PQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 496
           P++GP+ PEDVE AL+NTRPSAHL AH+Y+ FNADYGS+ILQ
Sbjct: 361 PKVGPVVPEDVEAALRNTRPSAHLLAHKYDTFNADYGSQILQ 402

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|56201862|dbj|BAD73312.1| vacuolar protein sorting factor 4B-like [Oryza sativa Japonica Group] gi|56201915|dbj|BAD73365.1| vacuolar protein sorting factor 4B-like [Oryza sativa Japonica Group] gi|218188826|gb|EEC71253.1| hypothetical protein OsI_03229 [Oryza sativa Indica Group] gi|222619029|gb|EEE55161.1| hypothetical protein OsJ_02974 [Oryza sativa Japonica Group]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 298/411 (72%), Positives = 335/411 (81%), Gaps = 17/411 (4%)

Query: 97  ADEPMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEITERPV------------SDGSSLNS 144
           ADEP  TRWTF+DF+++Y+ + G ++  EP   E  +               S GS+  S
Sbjct: 4   ADEPSITRWTFEDFEVYYEVRLGIRR--EPGGDEDGDGDGGGGRGYAPLGSGSAGSTRPS 61

Query: 145 NGHVQNTSDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCR 204
             H    +D+AV+EQ+          NG +        QK LLP+F+SAE R LAE+L R
Sbjct: 62  AAHANGGADLAVFEQFERLERKVELRNGAIEAGPP---QKSLLPSFESAEMRNLAETLLR 118

Query: 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTM 264
           DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYF GLLSPWKGILLFGPPGTGKTM
Sbjct: 119 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFKGLLSPWKGILLFGPPGTGKTM 178

Query: 265 LAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 324
           LAKAVATECKTTFFNISASS+VSKWRGDSEKL+KVLFELARHHAPSTIFLDEIDAIISQR
Sbjct: 179 LAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQR 238

Query: 325 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 384
           GEARSEHEASRRLKTELLIQMDGLT++D+LVFVLAATNLPWELDAAMLRRLEKRILVPLP
Sbjct: 239 GEARSEHEASRRLKTELLIQMDGLTKTDDLVFVLAATNLPWELDAAMLRRLEKRILVPLP 298

Query: 385 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 444
           + EAR AMFE LLPS  G  ++PYD+LVE+TEGYSGSDIRLV KEAAMQPLRRLM +LEG
Sbjct: 299 EQEARHAMFEELLPSVPGTMNIPYDVLVEKTEGYSGSDIRLVCKEAAMQPLRRLMSVLEG 358

Query: 445 RQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEIL 495
           RQE  P+DELP++GP+  ED+E+AL+NTRPSAHLH HRYEKFN DYGS +L
Sbjct: 359 RQEEVPEDELPEVGPVTTEDIELALRNTRPSAHLHVHRYEKFNQDYGSHVL 409

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357135895|ref|XP_003569543.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 2-like [Brachypodium distachyon]

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 295/404 (73%), Positives = 332/404 (82%), Gaps = 6/404 (1%)

Query: 95  AMADEPMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEIT-ERPVSDGSSLNSNG--HVQNT 151
           A  DEP  TRW+F+DF+ +YDA+ G +   + +  ++  ERP+  GS+ +S    H    
Sbjct: 2   AAGDEPSITRWSFEDFERYYDARLGIRGEPKGDGNDVDDERPLGSGSAGSSPAAFHANGG 61

Query: 152 SDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSP 211
           +D+AV+EQ+          NG +       LQK LLP F+SAETR LAE+L RDII GSP
Sbjct: 62  ADLAVFEQFERLNRKVGLHNGAMEA---RPLQKSLLPPFESAETRNLAETLLRDIIHGSP 118

Query: 212 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT 271
           DVKWESIKGLE AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT
Sbjct: 119 DVKWESIKGLETAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT 178

Query: 272 ECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEH 331
           ECKTTFFNISASS+VSKWRGDSEKL+KVLFELARHHAPSTIFLDEIDAIISQRGEARSEH
Sbjct: 179 ECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEH 238

Query: 332 EASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRA 391
           EASRRLKTELLIQMDGLT++ ELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ EAR A
Sbjct: 239 EASRRLKTELLIQMDGLTKTRELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARHA 298

Query: 392 MFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPD 451
           MFE  LPS      +PYD+LVE TEGYSGSDIRLV KEAAMQPLRRLM +LEG QE  P+
Sbjct: 299 MFEEFLPSTPVTMGIPYDVLVENTEGYSGSDIRLVCKEAAMQPLRRLMAVLEGTQEEVPE 358

Query: 452 DELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEIL 495
           DELP++GPI  ED+E+AL+NTRPSAHLH H+YEKFN DYGS ++
Sbjct: 359 DELPEVGPIAAEDIELALRNTRPSAHLHTHKYEKFNQDYGSHVI 402

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
TAIR|locus:2062274	393	CCP1 "conserved in ciliated sp	0.782	0.987	0.740	2.2e-153
UNIPROTKB|Q8IYT4	538	KATNAL2 "Katanin p60 ATPase-co	0.633	0.583	0.590	3.9e-92
UNIPROTKB|E2RK60	535	KATNAL2 "Uncharacterized prote	0.629	0.583	0.586	6.3e-92
UNIPROTKB|J9P5W4	378	KATNAL2 "Uncharacterized prote	0.629	0.825	0.586	6.3e-92
UNIPROTKB|E1BAN2	534	KATNAL2 "Uncharacterized prote	0.629	0.584	0.583	1e-91
UNIPROTKB|E1BZ64	466	KATNAL2 "Uncharacterized prote	0.633	0.673	0.583	1.7e-91
UNIPROTKB|J9PBP3	598	KATNAL2 "Uncharacterized prote	0.610	0.506	0.6	4.5e-91
MGI|MGI:1924234	539	Katnal2 "katanin p60 subunit A	0.620	0.571	0.583	5.7e-91
RGD|1564708	522	Katnal2 "katanin p60 subunit A	0.625	0.593	0.583	1.2e-90
UNIPROTKB|J9NYM5	431	KATNAL2 "Uncharacterized prote	0.459	0.529	0.673	8.7e-79

TAIR|locus:2062274 CCP1 "conserved in ciliated species and in the land plants 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1496 (531.7 bits), Expect = 2.2e-153, P = 2.2e-153
 Identities = 297/401 (74%), Positives = 338/401 (84%)

Query:    98 DEPMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEITERPVSDGSSLNSNGHVQNTSDMAVY 157
             DEP  TRW+F +FK FYDAKFGRKK+ E +     ++P  DGSS  +NG V N S     
Sbjct:     4 DEPSQTRWSFLEFKTFYDAKFGRKKLPEEDVSN-KDQP-EDGSSNGNNGDVNNNSSPV-- 59

Query:   158 EQYRTQGSGSTCL-NGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWE 216
                 T   G+T L NG   NVI E+ +K + P F+SAETR LAESL RDIIRG+P++KWE
Sbjct:    60 ----TNQDGNTALANG---NVIREKPKKSMFPPFESAETRTLAESLSRDIIRGNPNIKWE 112

Query:   217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT 276
             SIKGLENAK+LLKEAVVMPIKYP YF GLL+PWKGILLFGPPGTGKTMLAKAVATEC TT
Sbjct:   113 SIKGLENAKKLLKEAVVMPIKYPTYFNGLLTPWKGILLFGPPGTGKTMLAKAVATECNTT 172

Query:   277 FFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG-EARSEHEASR 335
             FFNISASSVVSKWRGDSEKLI+VLF+LARHHAPSTIFLDEIDAIISQRG E RSEHEASR
Sbjct:   173 FFNISASSVVSKWRGDSEKLIRVLFDLARHHAPSTIFLDEIDAIISQRGGEGRSEHEASR 232

Query:   336 RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFES 395
             RLKTELLIQMDGL +++ELVFVLAATNLPWELDAAMLRRLEKRILVPLPD EARR MFE 
Sbjct:   233 RLKTELLIQMDGLQKTNELVFVLAATNLPWELDAAMLRRLEKRILVPLPDPEARRGMFEM 292

Query:   396 LLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP 455
             L+PSQ G+E LP+D+LVE++EGYSGSDIR++ KEAAMQPLRR + +LE R++V P+DELP
Sbjct:   293 LIPSQPGDEPLPHDVLVEKSEGYSGSDIRILCKEAAMQPLRRTLAILEDREDVVPEDELP 352

Query:   456 QIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 496
             +IGPI PED++ AL NTRPSAHLHAH Y+KFN DYGS+IL+
Sbjct:   353 KIGPILPEDIDRALSNTRPSAHLHAHLYDKFNDDYGSQILK 393

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0019538 "protein metabolic process" evidence=ISS

UNIPROTKB|Q8IYT4 KATNAL2 "Katanin p60 ATPase-containing subunit A-like 2" [Homo sapiens (taxid:9606)]

 Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
 Identities = 190/322 (59%), Positives = 240/322 (74%)

Query:   179 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 237
             +ERL KPL      ++E R LA  + RDI   +P++KW  I GL+ AK+L+KEAVV PI+
Sbjct:   216 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 275

Query:   238 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 297
             YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct:   276 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 335

Query:   298 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 356
             +VLFELAR+HAPSTIFLDE+++++SQRG A   EHE S R+KTELL+QMDGL +S++LVF
Sbjct:   336 RVLFELARYHAPSTIFLDELESVMSQRGTASGGEHEGSLRMKTELLVQMDGLARSEDLVF 395

Query:   357 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP----SQTGE--ESLPYDL 410
             VLAA+NLPWELD AMLRRLEKRILV LP  EAR+AM    LP    S+  E    L Y +
Sbjct:   396 VLAASNLPWELDCAMLRRLEKRILVDLPSREARQAMIYHWLPPVSKSRALELHTELEYSV 455

Query:   411 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 470
             L + TEGYSGSDI+LV +EAAM+P+R++   LE  Q  + D    Q+  +   D    L 
Sbjct:   456 LSQETEGYSGSDIKLVCREAAMRPVRKIFDALENHQSESSDLPRIQLDIVTTADFLDVLT 515

Query:   471 NTRPSAHLHAHRYEKFNADYGS 492
             +T+PSA   A RY  +  ++ S
Sbjct:   516 HTKPSAKNLAQRYSDWQREFES 537

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0008568 "microtubule-severing ATPase activity" evidence=IEA

UNIPROTKB|E2RK60 KATNAL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
 Identities = 190/324 (58%), Positives = 241/324 (74%)

Query:   179 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 237
             +ERL KPL      ++E R LA  + RDI   +P++KW+ I GL+ AK+L+KEAVV PI+
Sbjct:   213 SERLLKPLSAFIGMNSEMRELAAMVSRDIYLHNPNIKWDDIIGLDTAKQLVKEAVVYPIR 272

Query:   238 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 297
             YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct:   273 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 332

Query:   298 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 356
             +VLFELAR+HAPSTIFLDE+++++SQRG A   EHE S R+KTELL+QMDGL +S++LVF
Sbjct:   333 RVLFELARYHAPSTIFLDELESVMSQRGTAPGGEHEGSLRMKTELLVQMDGLARSEDLVF 392

Query:   357 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP----SQTGE--ESLPYDL 410
             VLAA+NLPWELD AMLRRLEKRILV LP  EARRAM    LP    S+  E    L Y +
Sbjct:   393 VLAASNLPWELDCAMLRRLEKRILVDLPSREARRAMIYHWLPPVSKSRALELRTELEYGV 452

Query:   411 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP--QIGPIRPEDVEIA 468
             L + TEGYSGSDI+LV +EAAM+P+R++   LE     +    LP  Q+  +   D    
Sbjct:   453 LSQETEGYSGSDIKLVCREAAMRPMRKIFSALENHP--SESSNLPGIQLDTVTTADFLDV 510

Query:   469 LKNTRPSAHLHAHRYEKFNADYGS 492
             L +T+PSA     RY  + +++ S
Sbjct:   511 LAHTKPSAKNLTQRYSAWQSEFES 534

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|J9P5W4 KATNAL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
 Identities = 190/324 (58%), Positives = 241/324 (74%)

Query:   179 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 237
             +ERL KPL      ++E R LA  + RDI   +P++KW+ I GL+ AK+L+KEAVV PI+
Sbjct:    56 SERLLKPLSAFIGMNSEMRELAAMVSRDIYLHNPNIKWDDIIGLDTAKQLVKEAVVYPIR 115

Query:   238 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 297
             YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct:   116 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 175

Query:   298 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 356
             +VLFELAR+HAPSTIFLDE+++++SQRG A   EHE S R+KTELL+QMDGL +S++LVF
Sbjct:   176 RVLFELARYHAPSTIFLDELESVMSQRGTAPGGEHEGSLRMKTELLVQMDGLARSEDLVF 235

Query:   357 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP----SQTGE--ESLPYDL 410
             VLAA+NLPWELD AMLRRLEKRILV LP  EARRAM    LP    S+  E    L Y +
Sbjct:   236 VLAASNLPWELDCAMLRRLEKRILVDLPSREARRAMIYHWLPPVSKSRALELRTELEYGV 295

Query:   411 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP--QIGPIRPEDVEIA 468
             L + TEGYSGSDI+LV +EAAM+P+R++   LE     +    LP  Q+  +   D    
Sbjct:   296 LSQETEGYSGSDIKLVCREAAMRPMRKIFSALENHP--SESSNLPGIQLDTVTTADFLDV 353

Query:   469 LKNTRPSAHLHAHRYEKFNADYGS 492
             L +T+PSA     RY  + +++ S
Sbjct:   354 LAHTKPSAKNLTQRYSAWQSEFES 377

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|E1BAN2 KATNAL2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
 Identities = 189/324 (58%), Positives = 239/324 (73%)

Query:   179 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 237
             +ERL KPL      ++E R LA  + RDI   +P++KW  I GL+ AK+L+KEAVV PI+
Sbjct:   212 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 271

Query:   238 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 297
             YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct:   272 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 331

Query:   298 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 356
             +VLFELAR+HAPSTIFLDE+++++SQRG A   EHE S R+KTELL+QMDGL +S++LVF
Sbjct:   332 RVLFELARYHAPSTIFLDELESVMSQRGTAPGGEHEGSLRMKTELLVQMDGLARSEDLVF 391

Query:   357 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP------YDL 410
             VLAA+NLPWELD AMLRRLEKRILV LP  EAR AM    LP+ +   +L       Y L
Sbjct:   392 VLAASNLPWELDCAMLRRLEKRILVDLPSQEAREAMIHHWLPAVSRSSALELRADLEYSL 451

Query:   411 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP--QIGPIRPEDVEIA 468
             L   TEGYSGSDI+LV +EAAM+P+R++   LE  Q  +    LP  Q+  +   D    
Sbjct:   452 LSRETEGYSGSDIKLVCREAAMRPVRKIFNALENHQ--SGSSNLPGIQLDTVTTADFLDV 509

Query:   469 LKNTRPSAHLHAHRYEKFNADYGS 492
             L +T+PSA     RY  + +++ S
Sbjct:   510 LAHTKPSAKSLTQRYAAWQSEFES 533

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|E1BZ64 KATNAL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
 Identities = 188/322 (58%), Positives = 239/322 (74%)

Query:   179 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 237
             +ERL KPL      + E R LA  + +DI   +P+VKW+ I GL+ AKRL+KEAVV PI+
Sbjct:   144 SERLLKPLSAFIGMNGEMRELATVVSKDIYLHNPNVKWDDIIGLDAAKRLVKEAVVYPIR 203

Query:   238 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 297
             YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATEC TTFFNISAS++VSKWRGDSEKL+
Sbjct:   204 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLV 263

Query:   298 KVLFELARHHAPSTIFLDEIDAIISQRGE-ARSEHEASRRLKTELLIQMDGLTQSDELVF 356
             +VLFELAR+HAPSTIFLDE+++++SQRG  +  EHE SRR+KTELL+QMDGL +SD+LVF
Sbjct:   264 RVLFELARYHAPSTIFLDELESVMSQRGTISGGEHEGSRRMKTELLVQMDGLARSDDLVF 323

Query:   357 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP--SQTG----EESLPYDL 410
             VLAA+NLPWELD+AMLRRLEKRILV LP+ EAR+AM    LP  S +G       L Y L
Sbjct:   324 VLAASNLPWELDSAMLRRLEKRILVDLPNQEARQAMIRHWLPPLSNSGGVELRTDLDYSL 383

Query:   411 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 470
             L   T+GYSGSDI+LV KEAAM+P+R++   LE  Q    +     +  I   D    + 
Sbjct:   384 LGRETDGYSGSDIKLVCKEAAMRPVRKVFDALENHQPGNSNLAAVHLDMITTADFLDVIA 443

Query:   471 NTRPSAHLHAHRYEKFNADYGS 492
             +T+PSA   + +Y  +  ++ S
Sbjct:   444 HTKPSAKKLSQKYTAWQREFES 465

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|J9PBP3 KATNAL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
 Identities = 189/315 (60%), Positives = 236/315 (74%)

Query:   179 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 237
             +ERL KPL      ++E R LA  + RDI   +P++KW+ I GL+ AK+L+KEAVV PI+
Sbjct:   216 SERLLKPLSAFIGMNSEMRELAAMVSRDIYLHNPNIKWDDIIGLDTAKQLVKEAVVYPIR 275

Query:   238 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 297
             YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct:   276 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 335

Query:   298 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 356
             +VLFELAR+HAPSTIFLDE+++++SQRG A   EHE S R+KTELL+QMDGL +S++LVF
Sbjct:   336 RVLFELARYHAPSTIFLDELESVMSQRGTAPGGEHEGSLRMKTELLVQMDGLARSEDLVF 395

Query:   357 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP----SQTGE--ESLPYDL 410
             VLAA+NLPWELD AMLRRLEKRILV LP  EARRAM    LP    S+  E    L Y +
Sbjct:   396 VLAASNLPWELDCAMLRRLEKRILVDLPSREARRAMIYHWLPPVSKSRALELRTELEYGV 455

Query:   411 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP--QIGPIRPEDVEIA 468
             L + TEGYSGSDI+LV +EAAM+P+R++   LE     +    LP  Q+  +   D    
Sbjct:   456 LSQETEGYSGSDIKLVCREAAMRPMRKIFSALENHP--SESSNLPGIQLDTVTTADFLDV 513

Query:   469 LKNTRPSAHLHAHRY 483
             L +T+PSA     RY
Sbjct:   514 LAHTKPSAKNLTQRY 528

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

MGI|MGI:1924234 Katnal2 "katanin p60 subunit A-like 2" [Mus musculus (taxid:10090)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 189/324 (58%), Positives = 241/324 (74%)

Query:   179 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 237
             +ERL KPL      ++E R LA  + RDI   +P++KW  I GL+ AK+L+KEAVV PI+
Sbjct:   217 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 276

Query:   238 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 297
             YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct:   277 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 336

Query:   298 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 356
             +VLFELAR+HAPSTIFLDE+++++SQRG     EHE S R+KTELL+QMDGL +S++LVF
Sbjct:   337 RVLFELARYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELLVQMDGLARSEDLVF 396

Query:   357 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP------YDL 410
             VLAA+NLPWELD AMLRRLEKRILV LP  EAR+AM    LP  +   +L       Y +
Sbjct:   397 VLAASNLPWELDCAMLRRLEKRILVDLPSQEARQAMIYHWLPPVSKNHALELHTQLEYSV 456

Query:   411 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP--QIGPIRPEDVEIA 468
             L + TEGYSGSDI+LV +EAAM+P+R++  +LE  Q  +  + LP  Q+  +  +D    
Sbjct:   457 LSQETEGYSGSDIKLVCREAAMRPVRKIFSVLENNQ--SESNNLPGIQLDTVTTQDFLDV 514

Query:   469 LKNTRPSAHLHAHRY----EKFNA 488
             L +T+PSA     RY    EKF +
Sbjct:   515 LAHTKPSAKNLTERYLAWQEKFES 538

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008568 "microtubule-severing ATPase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

RGD|1564708 Katnal2 "katanin p60 subunit A-like 2" [Rattus norvegicus (taxid:10116)]

 Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
 Identities = 188/322 (58%), Positives = 239/322 (74%)

Query:   179 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 237
             +ERL KPL      ++E R LA  + RDI   +P++KW  I GL+ AK+L+KEAVV PI+
Sbjct:   200 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 259

Query:   238 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 297
             YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct:   260 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 319

Query:   298 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 356
             +VLFELAR+HAPSTIFLDE+++++SQRG     EHE S R+KTELL+QMDGL +S++LVF
Sbjct:   320 RVLFELARYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELLVQMDGLARSEDLVF 379

Query:   357 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP------YDL 410
             VLAA+NLPWELD AMLRRLEKRILV LP  EAR+AM    LP  +   +L       Y +
Sbjct:   380 VLAASNLPWELDCAMLRRLEKRILVDLPSQEARQAMIYHWLPPVSKNHALELRTQLEYSV 439

Query:   411 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 470
             L + TEGYSGSDI+LV +EAAM+P+R++  +LE  Q  + +    Q+  +  ED    L 
Sbjct:   440 LSQETEGYSGSDIKLVCREAAMRPVRKIFNVLENHQSESSNLLGIQLDTVTTEDFLDVLA 499

Query:   471 NTRPSAHLHAHRY----EKFNA 488
             +T+PSA     RY    EKF +
Sbjct:   500 HTKPSAKNLTERYLAWQEKFES 521

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|J9NYM5 KATNAL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
 Identities = 155/230 (67%), Positives = 190/230 (82%)

Query:   179 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 237
             +ERL KPL      ++E R LA  + RDI   +P++KW+ I GL+ AK+L+KEAVV PI+
Sbjct:   188 SERLLKPLSAFIGMNSEMRELAAMVSRDIYLHNPNIKWDDIIGLDTAKQLVKEAVVYPIR 247

Query:   238 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 297
             YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct:   248 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 307

Query:   298 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 356
             +VLFELAR+HAPSTIFLDE+++++SQRG A   EHE S R+KTELL+QMDGL +S++LVF
Sbjct:   308 RVLFELARYHAPSTIFLDELESVMSQRGTAPGGEHEGSLRMKTELLVQMDGLARSEDLVF 367

Query:   357 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL 406
             VLAA+NLPWELD AMLRRLEKRILV LP  EARRAM    LP  +   +L
Sbjct:   368 VLAASNLPWELDCAMLRRLEKRILVDLPSREARRAMIYHWLPPVSKSRAL 417

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.3	0.914
3rd Layer	3.6.4	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028283001	SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (397 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00030693001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (228 aa)			•						0.437

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	496
COG0464	494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	1e-76
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	3e-66
COG1222	406	COG1222, RPT1, ATP-dependent 26S proteasome regula	5e-64
PRK03992	389	PRK03992, PRK03992, proteasome-activating nucleoti	5e-60
TIGR01242	364	TIGR01242, 26Sp45, 26S proteasome subunit P45 fami	8e-54
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	6e-53
pfam00004	131	pfam00004, AAA, ATPase family associated with vari	6e-52
PTZ00454	398	PTZ00454, PTZ00454, 26S protease regulatory subuni	4e-50
PTZ00361	438	PTZ00361, PTZ00361, 26 proteosome regulatory subun	2e-44
TIGR01241	495	TIGR01241, FtsH_fam, ATP-dependent metalloprotease	3e-43
COG1223	368	COG1223, COG1223, Predicted ATPase (AAA+ superfami	1e-38
CHL00176	638	CHL00176, ftsH, cell division protein; Validated	5e-37
COG0465	596	COG0465, HflB, ATP-dependent Zn proteases [Posttra	3e-34
PRK10733	644	PRK10733, hflB, ATP-dependent metalloprotease; Rev	4e-32
TIGR03689	512	TIGR03689, pup_AAA, proteasome ATPase	5e-30
COG0464	494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	4e-29
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	5e-23
smart00382	148	smart00382, AAA, ATPases associated with a variety	1e-15
CHL00195	489	CHL00195, ycf46, Ycf46; Provisional	1e-11
PRK13342	413	PRK13342, PRK13342, recombination factor protein R	3e-07
pfam07724	168	pfam07724, AAA_2, AAA domain (Cdc48 subfamily)	1e-05
COG0714	329	COG0714, COG0714, MoxR-like ATPases [General funct	3e-05
COG1224	450	COG1224, TIP49, DNA helicase TIP49, TBP-interactin	5e-05
COG2256	436	COG2256, MGS1, ATPase related to the helicase subu	8e-05
TIGR02639	730	TIGR02639, ClpA, ATP-dependent Clp protease ATP-bi	2e-04
pfam06068	395	pfam06068, TIP49, TIP49 C-terminus	2e-04
pfam13479	201	pfam13479, AAA_24, AAA domain	2e-04
pfam01078	207	pfam01078, Mg_chelatase, Magnesium chelatase, subu	5e-04
PRK00080	328	PRK00080, ruvB, Holliday junction DNA helicase Ruv	7e-04
COG2255	332	COG2255, RuvB, Holliday junction resolvasome, heli	8e-04
TIGR03922	557	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPas	8e-04
PRK11034	758	PRK11034, clpA, ATP-dependent Clp protease ATP-bin	0.001
COG0606	490	COG0606, COG0606, Predicted ATPase with chaperone	0.001
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	0.002
TIGR00635	305	TIGR00635, ruvB, Holliday junction DNA helicase, R	0.003

>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

 Score =  248 bits (635), Expect = 1e-76
 Identities = 122/281 (43%), Positives = 169/281 (60%), Gaps = 30/281 (10%)

Query: 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 269
            DV  + I GLE AK  LKEA+  P+K P+ F  L L P KG+LL+GPPGTGKT+LAKAV
Sbjct: 237 EDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAV 296

Query: 270 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 329
           A E ++ F ++  S ++SKW G+SEK I+ LFE AR  APS IF+DEID++ S RG   S
Sbjct: 297 ALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGP--S 354

Query: 330 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTE 387
           E  + RR+  +LL ++DG+ +++  V V+AATN P +LD A+LR  R ++ I VPLPD E
Sbjct: 355 EDGSGRRVVGQLLTELDGIEKAEG-VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413

Query: 388 ARRAMFESLLPSQ--TGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 445
            R  +F+  L  +     E +  + L E TEGYSG+DI  + +EAA++ LR         
Sbjct: 414 ERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALRE-------- 465

Query: 446 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKF 486
              A   E+        +D   ALK  +PS       YE++
Sbjct: 466 ---ARRREVTL------DDFLDALKKIKPSV-----TYEEW 492

Length = 494

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score =  226 bits (578), Expect = 3e-66
 Identities = 122/295 (41%), Positives = 173/295 (58%), Gaps = 6/295 (2%)

Query: 201 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPG 259
           S  R+++   P+V+W  I GLE  K+ L+EAV  P+K+P+ F  + + P KG+LLFGPPG
Sbjct: 438 SAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPG 497

Query: 260 TGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 319
           TGKT+LAKAVATE    F  +    ++SKW G+SEK I+ +F  AR  AP+ IF DEIDA
Sbjct: 498 TGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDA 557

Query: 320 IISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEK 377
           I   RG AR +   + R+  +LL +MDG+ +   +V V+AATN P  LD A+LR  R ++
Sbjct: 558 IAPARG-ARFDTSVTDRIVNQLLTEMDGIQELSNVV-VIAATNRPDILDPALLRPGRFDR 615

Query: 378 RILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 437
            ILVP PD EAR+ +F+    S    E +  + L E TEGY+G+DI  V +EAAM  LR 
Sbjct: 616 LILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRE 675

Query: 438 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS-AHLHAHRYEKFNADYG 491
            +      +    ++E  +   +       ALK  +PS +     RYE+   +  
Sbjct: 676 SIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELK 730

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

 Score =  212 bits (543), Expect = 5e-64
 Identities = 102/248 (41%), Positives = 148/248 (59%), Gaps = 13/248 (5%)

Query: 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKA 268
            PDV +E I GL+   + ++E V +P+K P+ F  L + P KG+LL+GPPGTGKT+LAKA
Sbjct: 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKA 204

Query: 269 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 328
           VA +   TF  +  S +V K+ G+  +L++ LFELAR  APS IF+DEIDAI ++R ++ 
Sbjct: 205 VANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSG 264

Query: 329 S--EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLP 384
           +  + E  R +  ELL Q+DG       V V+ ATN P  LD A+LR  R +++I  PLP
Sbjct: 265 TSGDREVQRTM-LELLNQLDGFDPRGN-VKVIMATNRPDILDPALLRPGRFDRKIEFPLP 322

Query: 385 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 444
           D E R  + +         + +  +LL   TEG+SG+D++ +  EA M  +R      E 
Sbjct: 323 DEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIR------ER 376

Query: 445 RQEVAPDD 452
           R EV  +D
Sbjct: 377 RDEVTMED 384

Length = 406

>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional

 Score =  201 bits (515), Expect = 5e-60
 Identities = 104/248 (41%), Positives = 149/248 (60%), Gaps = 13/248 (5%)

Query: 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKA 268
           SP+V +E I GLE   R ++EAV +P+K P+ F  + + P KG+LL+GPPGTGKT+LAKA
Sbjct: 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKA 184

Query: 269 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 328
           VA E   TF  +  S +V K+ G+  +L++ LFELAR  APS IF+DEIDAI ++R ++ 
Sbjct: 185 VAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSG 244

Query: 329 S--EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLP 384
           +  + E  R L  +LL +MDG       V ++AATN    LD A+LR  R ++ I VPLP
Sbjct: 245 TSGDREVQRTL-MQLLAEMDGFDPRGN-VKIIAATNRIDILDPAILRPGRFDRIIEVPLP 302

Query: 385 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 444
           D E R  + +         + +  + L E TEG SG+D++ +  EA M  +R      + 
Sbjct: 303 DEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIR------DD 356

Query: 445 RQEVAPDD 452
           R EV  +D
Sbjct: 357 RTEVTMED 364

Length = 389

>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family

 Score =  184 bits (469), Expect = 8e-54
 Identities = 102/247 (41%), Positives = 149/247 (60%), Gaps = 13/247 (5%)

Query: 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 269
           P+V +E I GLE   R ++EAV +P+K+P+ F  + + P KG+LL+GPPGTGKT+LAKAV
Sbjct: 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAV 176

Query: 270 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 329
           A E   TF  +  S +V K+ G+  +L++ +FELA+  APS IF+DEIDAI ++R ++ +
Sbjct: 177 AHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGT 236

Query: 330 --EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPD 385
             + E  R L  +LL ++DG       V V+AATN P  LD A+LR  R ++ I VPLPD
Sbjct: 237 SGDREVQRTL-MQLLAELDGFDPRGN-VKVIAATNRPDILDPALLRPGRFDRIIEVPLPD 294

Query: 386 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 445
            E R  + +         E +  + + + TEG SG+D++ +  EA M  +R      E R
Sbjct: 295 FEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIR------EER 348

Query: 446 QEVAPDD 452
             V  DD
Sbjct: 349 DYVTMDD 355

Many proteins may score above the trusted cutoff because an internal. Length = 364

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score =  190 bits (483), Expect = 6e-53
 Identities = 113/293 (38%), Positives = 171/293 (58%), Gaps = 13/293 (4%)

Query: 191 DSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPW 249
           ++ E     + +  +I R  P V +E I GL+ AK  ++E V +P+K+P+ F  L + P 
Sbjct: 153 EATEVEIREKPVREEIERKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPP 212

Query: 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAP 309
           KG+LL+GPPGTGKT+LAKAVA E    F +I+   ++SK+ G+SE+ ++ +F+ A  +AP
Sbjct: 213 KGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAP 272

Query: 310 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 369
           S IF+DEIDAI  +R E   E E  +R+  +LL  MDGL      V V+ ATN P  LD 
Sbjct: 273 SIIFIDEIDAIAPKREEVTGEVE--KRVVAQLLTLMDGLKGRGR-VIVIGATNRPDALDP 329

Query: 370 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVS 427
           A+ R  R ++ I++ +PD  AR+ + +    +    E +  D L E T G+ G+D+  ++
Sbjct: 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALA 389

Query: 428 KEAAMQPLRRLMVLLEGR----QEVAPDDELPQIGPIRPEDVEIALKNTRPSA 476
           KEAAM  LRR   + EG+     E  P + L ++  +  +D   ALK   PSA
Sbjct: 390 KEAAMAALRR--FIREGKINFEAEEIPAEVLKEL-KVTMKDFMEALKMVEPSA 439

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA)

 Score =  172 bits (437), Expect = 6e-52
 Identities = 68/133 (51%), Positives = 87/133 (65%), Gaps = 3/133 (2%)

Query: 252 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 311
           +LL+GPPGTGKT LAKAVA E    F  IS S +VSK+ G+SEK ++ LFE A+  AP  
Sbjct: 1   LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV 60

Query: 312 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAM 371
           IF+DEIDA+   RG        SRR+  +LL ++DG T S   V V+AATN P +LD A+
Sbjct: 61  IFIDEIDALAGSRG--SGGDSESRRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLDPAL 118

Query: 372 LR-RLEKRILVPL 383
           LR R ++ I  PL
Sbjct: 119 LRGRFDRIIEFPL 131

AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131

>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional

 Score =  176 bits (447), Expect = 4e-50
 Identities = 94/232 (40%), Positives = 144/232 (62%), Gaps = 7/232 (3%)

Query: 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 269
           PDV +  I GL+  K+ ++EAV +P+  P+ +  + + P +G+LL+GPPGTGKTMLAKAV
Sbjct: 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAV 199

Query: 270 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 329
           A     TF  +  S  V K+ G+  ++++ +F LAR +APS IF+DE+D+I ++R +A++
Sbjct: 200 AHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQT 259

Query: 330 --EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPD 385
             + E  R L  ELL QMDG  Q+   V V+ ATN    LD A+LR  RL+++I  PLPD
Sbjct: 260 GADREVQRIL-LELLNQMDGFDQTTN-VKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 317

Query: 386 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 437
              +R +F+++       E +  +  V R E  S +DI  + +EA MQ +R+
Sbjct: 318 RRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRK 369

Length = 398

>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional

 Score =  161 bits (410), Expect = 2e-44
 Identities = 91/233 (39%), Positives = 141/233 (60%), Gaps = 9/233 (3%)

Query: 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKA 268
           +P   +  I GLE   + +KEAV +P+ +P+ +  + + P KG++L+GPPGTGKT+LAKA
Sbjct: 177 APLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKA 236

Query: 269 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 328
           VA E   TF  +  S ++ K+ GD  KL++ LF +A  +APS +F+DEIDAI ++R +A 
Sbjct: 237 VANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDAT 296

Query: 329 S--EHEASRRLKTELLIQMDGL-TQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 383
           S  E E  R +  ELL Q+DG  ++ D  V V+ ATN    LD A++R  R++++I  P 
Sbjct: 297 SGGEKEIQRTM-LELLNQLDGFDSRGD--VKVIMATNRIESLDPALIRPGRIDRKIEFPN 353

Query: 384 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 436
           PD + +R +FE      T  E +  +  +   +  SG+DI+ +  EA +  LR
Sbjct: 354 PDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALR 406

Length = 438

>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH

 Score =  159 bits (404), Expect = 3e-43
 Identities = 91/254 (35%), Positives = 141/254 (55%), Gaps = 16/254 (6%)

Query: 189 NFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFT--GLL 246
           +F  ++ + L E          P V ++ + G++ AK  L E +V  +K P  FT  G  
Sbjct: 36  SFGKSKAKLLNE--------EKPKVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAK 86

Query: 247 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARH 306
            P KG+LL GPPGTGKT+LAKAVA E    FF+IS S  V  + G     ++ LFE A+ 
Sbjct: 87  IP-KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKK 145

Query: 307 HAPSTIFLDEIDAIISQRGE-ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 365
           +AP  IF+DEIDA+  QRG      ++   +   +LL++MDG   +  ++ V+AATN P 
Sbjct: 146 NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVI-VIAATNRPD 204

Query: 366 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDI 423
            LD A+LR  R +++++V LPD + R  + +    ++     +    +  RT G+SG+D+
Sbjct: 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADL 264

Query: 424 RLVSKEAAMQPLRR 437
             +  EAA+   R+
Sbjct: 265 ANLLNEAALLAARK 278

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495

>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]

 Score =  144 bits (364), Expect = 1e-38
 Identities = 89/267 (33%), Positives = 134/267 (50%), Gaps = 26/267 (9%)

Query: 211 PDVKWESIKGLENAKRLLKEAVVMP-IKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV 269
            D+  + + G E AKR  K  ++M  ++ P+ F G  +P K +L +GPPGTGKTM+AKA+
Sbjct: 116 SDITLDDVIGQEEAKR--KCRLIMEYLENPERF-GDWAP-KNVLFYGPPGTGKTMMAKAL 171

Query: 270 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 329
           A E K     + A+ ++ +  GD  + I  L+E AR  AP  +F+DE+DAI   R     
Sbjct: 172 ANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQEL 231

Query: 330 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEAR 389
             + S  +   LL ++DG+ +++ +V + AATN P  LD A+  R E+ I   LP+ E R
Sbjct: 232 RGDVSEIVNA-LLTELDGIKENEGVVTI-AATNRPELLDPAIRSRFEEEIEFKLPNDEER 289

Query: 390 RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQP-LRRLMVLLEGRQEV 448
             + E                L  +T+G SG DI    KE  ++  L R   + E R++V
Sbjct: 290 LEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDI----KEKVLKTALHR--AIAEDREKV 343

Query: 449 APDDELPQIGPIRPEDVEIALKNTRPS 475
                         ED+E ALK  R  
Sbjct: 344 ------------EREDIEKALKKERKR 358

Length = 368

>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated

 Score =  144 bits (364), Expect = 5e-37
 Identities = 86/230 (37%), Positives = 133/230 (57%), Gaps = 6/230 (2%)

Query: 212 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 270
            + +  I G+E AK   +E VV  +K P+ FT +     KG+LL GPPGTGKT+LAKA+A
Sbjct: 179 GITFRDIAGIEEAKEEFEE-VVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIA 237

Query: 271 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RS 329
            E +  FF+IS S  V  + G     ++ LF+ A+ ++P  +F+DEIDA+  QRG     
Sbjct: 238 GEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGG 297

Query: 330 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTE 387
            ++   +   +LL +MDG   +  ++ V+AATN    LDAA+LR  R +++I V LPD E
Sbjct: 298 GNDEREQTLNQLLTEMDGFKGNKGVI-VIAATNRVDILDAALLRPGRFDRQITVSLPDRE 356

Query: 388 ARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 437
            R  + +    ++     +  +L+  RT G+SG+D+  +  EAA+   RR
Sbjct: 357 GRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR 406

Length = 638

>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

 Score =  135 bits (342), Expect = 3e-34
 Identities = 89/228 (39%), Positives = 129/228 (56%), Gaps = 8/228 (3%)

Query: 209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLA 266
               V +  + G++ AK  L E +V  +K PK +  L    P KG+LL GPPGTGKT+LA
Sbjct: 143 DQVKVTFADVAGVDEAKEELSE-LVDFLKNPKKYQALGAKIP-KGVLLVGPPGTGKTLLA 200

Query: 267 KAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 326
           KAVA E    FF+IS S  V  + G     ++ LFE A+ +AP  IF+DEIDA+  QRG 
Sbjct: 201 KAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGA 260

Query: 327 AR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 383
                ++   +   +LL++MDG   + E V V+AATN P  LD A+LR  R +++ILV L
Sbjct: 261 GLGGGNDEREQTLNQLLVEMDGFGGN-EGVIVIAATNRPDVLDPALLRPGRFDRQILVEL 319

Query: 384 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAA 431
           PD + R  + +    ++   E +    +   T G+SG+D+  +  EAA
Sbjct: 320 PDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAA 367

Length = 596

>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed

 Score =  129 bits (326), Expect = 4e-32
 Identities = 85/248 (34%), Positives = 135/248 (54%), Gaps = 14/248 (5%)

Query: 189 NFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSP 248
           +F  ++ R L E    D I+ +    +  + G + AK  + E +V  ++ P  F  L   
Sbjct: 133 SFGKSKARMLTE----DQIKTT----FADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGK 183

Query: 249 W-KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHH 307
             KG+L+ GPPGTGKT+LAKA+A E K  FF IS S  V  + G     ++ +FE A+  
Sbjct: 184 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKA 243

Query: 308 APSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 366
           AP  IF+DEIDA+  QRG      H+   +   ++L++MDG  + +E + V+AATN P  
Sbjct: 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF-EGNEGIIVIAATNRPDV 302

Query: 367 LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIR 424
           LD A+LR  R +++++V LPD   R  + +  +        +   ++   T G+SG+D+ 
Sbjct: 303 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLA 362

Query: 425 LVSKEAAM 432
            +  EAA+
Sbjct: 363 NLVNEAAL 370

Length = 644

>gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase

 Score =  122 bits (308), Expect = 5e-30
 Identities = 73/232 (31%), Positives = 120/232 (51%), Gaps = 29/232 (12%)

Query: 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 269
           PDV +  I GL +    +++AV +P  +P+ +    L P KG+LL+GPPG GKT++AKAV
Sbjct: 177 PDVTYADIGGLGSQIEQIRDAVELPFLHPELYREYGLKPPKGVLLYGPPGCGKTLIAKAV 236

Query: 270 ATEC----------KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHA----PSTIFLD 315
           A             K+ F NI    +++K+ G++E+ I+++F+ AR  A    P  +F D
Sbjct: 237 ANSLAARIGAEGGGKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASEGRPVIVFFD 296

Query: 316 EIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR-- 373
           E+D++   RG   S  +    +  +LL ++DG+   D  V V+ A+N    +D A+LR  
Sbjct: 297 EMDSLFRTRGSGVSS-DVETTVVPQLLAEIDGVESLDN-VIVIGASNREDMIDPAILRPG 354

Query: 374 RLEKRILVPLPDTEARRAMF----------ESLLPSQTGEESLPYDLLVERT 415
           RL+ +I +  PD EA   +F             L +  G+       L++R 
Sbjct: 355 RLDVKIRIERPDAEAAADIFAKYLTDDLPLPEDLAAHDGDREATAAALIQRV 406

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 512

>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

 Score =  119 bits (300), Expect = 4e-29
 Identities = 93/243 (38%), Positives = 131/243 (53%), Gaps = 20/243 (8%)

Query: 234 MPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGD 292
           +P+K P+ F  L + P KG+LL GPPGTGKT+LA+A+A      F +I+   ++SK+ G+
Sbjct: 2   LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALA-NEGAEFLSINGPEILSKYVGE 60

Query: 293 SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 352
           SE  ++ LFE A   APS IF+DEIDA+  +R   + E E  RR+  +LL  MDGL +  
Sbjct: 61  SELRLRELFEEAEKLAPSIIFIDEIDALAPKRSSDQGEVE--RRVVAQLLALMDGLKRGQ 118

Query: 353 ELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARR------AMFESLLPSQTGEE 404
            +V    ATN P  LD A  R  R ++ I V LPD   R            L P  TG+ 
Sbjct: 119 VIVI--GATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKT 176

Query: 405 SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED 464
                 L  RT G SG+D+  ++KEAA++ LRR + L+     V  DD    +  + P  
Sbjct: 177 ------LAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPSR 230

Query: 465 VEI 467
             +
Sbjct: 231 GVL 233

Length = 494

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 94.9 bits (236), Expect = 5e-23
 Identities = 58/176 (32%), Positives = 82/176 (46%), Gaps = 36/176 (20%)

Query: 219 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KT 275
            G E A   L+EA+             L P K +LL+GPPGTGKT LA+A+A E      
Sbjct: 1   VGQEEAIEALREAL------------ELPPPKNLLLYGPPGTGKTTLARAIANELFRPGA 48

Query: 276 TFFNISASSVVSKWRGDSEK---LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHE 332
            F  ++AS ++            L+++LFELA    P  +F+DEID++            
Sbjct: 49  PFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL------------ 96

Query: 333 ASRRLKTELLIQMDGL---TQSDELVFVLAATNLPWELDAAM--LRRLEKRILVPL 383
            SR  +  LL  ++ L       E V V+ ATN P   D       RL+ RI++PL
Sbjct: 97  -SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 73.9 bits (181), Expect = 1e-15
 Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 26/156 (16%)

Query: 248 PWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISAS--------------SVVSKWR 290
           P + IL+ GPPG+GKT LA+A+A E          I                     K  
Sbjct: 1   PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60

Query: 291 GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ 350
           G  E  +++   LAR   P  + LDEI +++    EA         L     +++  L +
Sbjct: 61  GSGELRLRLALALARKLKPDVLILDEITSLLDAEQEA--------LLLLLEELRLLLLLK 112

Query: 351 SDELVFVLAATNLP-WELDAAMLRRLEKRILVPLPD 385
           S++ + V+  TN       A + RR ++RI++ L  
Sbjct: 113 SEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLIL 148

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 62/232 (26%), Positives = 107/232 (46%), Gaps = 24/232 (10%)

Query: 210 SPDVKWESIKGLENAKRLLKE-AVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKA 268
           S + K   I GL+N K  LK+ +     +   Y  GL +P +G+LL G  GTGK++ AKA
Sbjct: 222 SVNEKISDIGGLDNLKDWLKKRSTSFSKQASNY--GLPTP-RGLLLVGIQGTGKSLTAKA 278

Query: 269 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 328
           +A + +     +    +     G+SE  ++ +  +A   +P  +++DEID   S   E++
Sbjct: 279 IANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNS-ESK 337

Query: 329 SEHEASRRLKTELLIQMDGLTQSDELVFVLAATN----LPWELDAAMLR--RLEKRILVP 382
            +   + R+    +     L++    VFV+A  N    LP E    +LR  R ++   + 
Sbjct: 338 GDSGTTNRVLATFITW---LSEKKSPVFVVATANNIDLLPLE----ILRKGRFDEIFFLD 390

Query: 383 LPDTEARRAMFESLL----PSQTGEESLPYDLLVERTEGYSGSDIRLVSKEA 430
           LP  E R  +F+  L    P     +      L + +  +SG++I     EA
Sbjct: 391 LPSLEEREKIFKIHLQKFRPKSW--KKYDIKKLSKLSNKFSGAEIEQSIIEA 440

Length = 489

>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed

 Score = 52.4 bits (127), Expect = 3e-07
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 11/70 (15%)

Query: 252 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPS- 310
           ++L+GPPGTGKT LA+ +A      F  +SA +          K ++ + E AR    + 
Sbjct: 39  MILWGPPGTGKTTLARIIAGATDAPFEALSAVT-------SGVKDLREVIEEARQRRSAG 91

Query: 311 --TI-FLDEI 317
             TI F+DEI
Sbjct: 92  RRTILFIDEI 101

Length = 413

>gnl|CDD|219536 pfam07724, AAA_2, AAA domain (Cdc48 subfamily)

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 13/82 (15%)

Query: 252 ILLFGPPGTGKTMLAKAVA-----TECKTTFFNISA---SSVVSKWRGDSEKLIKV---- 299
            L  GP G GKT LAKA+A      E      ++S       VS+  G     +      
Sbjct: 6   FLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGG 65

Query: 300 -LFELARHHAPSTIFLDEIDAI 320
            L E  R    S + +DEI+  
Sbjct: 66  QLTEAVRRKPYSIVLIDEIEKA 87

This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 168

>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only]

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 45/178 (25%), Positives = 64/178 (35%), Gaps = 31/178 (17%)

Query: 252 ILLFGPPGTGKTMLAKAVATECKTTFFNIS------ASSVVSKWRGDSEKLIKVLFELAR 305
           +LL GPPG GKT+LA+A+A      F  I        S ++  +   +  L    F    
Sbjct: 46  VLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVP 105

Query: 306 ----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL---IQMDGLTQSD--ELVF 356
                     + LDEI+        A  E + +  L   L    + + GLT         
Sbjct: 106 GPLFAAVRVILLLDEIN-------RAPPEVQNA--LLEALEERQVTVPGLTTIRLPPPFI 156

Query: 357 VLAATNLPW-----ELDAAMLRRLEKRILV--PLPDTEARRAMFESLLPSQTGEESLP 407
           V+A  N         L  A+L R   RI V  P  + E R  +       +   ESL 
Sbjct: 157 VIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVGGVDELDLESLV 214

Length = 329

>gnl|CDD|224145 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein [Transcription]

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 250 KGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKWRGDSEKLIKVL 300
           +GIL+ GPPGTGKT LA  +A E      F  IS S + S     +E L + L
Sbjct: 66  RGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQAL 118

Length = 450

>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

 Score = 44.5 bits (106), Expect = 8e-05
 Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 11/68 (16%)

Query: 254 LFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARH---HAPS 310
           L+GPPGTGKT LA+ +A      F  +SA +          K ++ + E AR        
Sbjct: 53  LWGPPGTGKTTLARLIAGTTNAAFEALSAVT-------SGVKDLREIIEEARKNRLLGRR 105

Query: 311 TI-FLDEI 317
           TI FLDEI
Sbjct: 106 TILFLDEI 113

Length = 436

>gnl|CDD|233959 TIGR02639, ClpA, ATP-dependent Clp protease ATP-binding subunit clpA

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 29/165 (17%)

Query: 253 LLFGPPGTGKTMLAKAVATEC----------KTTFFNISASSVV--SKWRGDSEKLIK-V 299
           LL G PG GKT + + +A                 +++   +++  +K+RGD E+ +K V
Sbjct: 206 LLVGEPGVGKTAIVEGLALRIAEGKVPERLKNAKIYSLDMGTLLAGTKYRGDFEERLKAV 265

Query: 300 LFELARHHAPSTI-FLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 358
           + E+ +   P+ I F+DEI  I+     +    +AS  LK  L         S ++  + 
Sbjct: 266 VSEIEKE--PNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL--------SSGKIRCIG 315

Query: 359 AAT----NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 399
           + T       +E D A+ RR +K I V  P  E    + + L   
Sbjct: 316 STTYEEYKNHFEKDRALSRRFQK-IDVGEPSIEETVKILKGLKEQ 359

[Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 730

>gnl|CDD|147949 pfam06068, TIP49, TIP49 C-terminus

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 250 KGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVS 287
           + +L+ GPPGTGKT LA A++ E    T F  IS S V S
Sbjct: 51  RAVLIAGPPGTGKTALAIAISKELGEDTPFCPISGSEVYS 90

This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases. Length = 395

>gnl|CDD|222163 pfam13479, AAA_24, AAA domain

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 17/100 (17%)

Query: 247 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS------EKLIKVL 300
              K +L++GPPG GKT LAK      KT F ++ A +     RGD+      + L   L
Sbjct: 2   KNIK-VLIYGPPGIGKTSLAKT-LPP-KTLFLDLDAGTTKVLSRGDNVDIRSWQDLRDFL 58

Query: 301 FELARHHAP-STIFLDEIDAI-------ISQRGEARSEHE 332
            ELA   A   T+ +D I  +       I ++ + +SE  
Sbjct: 59  DELAEDLAEYDTLVIDTITKLERLCLAWIKKQNKKKSERT 98

This AAA domain is found in a wide variety of presumed phage proteins. Length = 201

>gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 20/57 (35%)

Query: 218 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKG---ILLFGPPGTGKTMLAKAVAT 271
           +KG E AKR L+ A                   G   +L+ GPPG+GKTMLAK +  
Sbjct: 5   VKGQEQAKRALEIAAA-----------------GGHNLLMIGPPGSGKTMLAKRLPG 44

Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa. Length = 207

>gnl|CDD|234619 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed

 Score = 41.3 bits (98), Expect = 7e-04
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 252 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 311
           +LL+GPPG GKT LA  +A E        S    + K  GD   L  +L  L        
Sbjct: 54  VLLYGPPGLGKTTLANIIANEMGVNIRITSG-PALEK-PGD---LAAILTNLEEG---DV 105

Query: 312 IFLDEI 317
           +F+DEI
Sbjct: 106 LFIDEI 111

Length = 328

>gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

 Score = 41.0 bits (97), Expect = 8e-04
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 252 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 311
           +LLFGPPG GKT LA  +A E        S  ++     GD   L  +L  L        
Sbjct: 55  VLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP--GD---LAAILTNLEEG---DV 106

Query: 312 IFLDEIDAI 320
           +F+DEI  +
Sbjct: 107 LFIDEIHRL 115

Length = 332

>gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA

 Score = 41.8 bits (98), Expect = 8e-04
 Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 17/150 (11%)

Query: 220 GLENAKR---LLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE-C-- 273
           GLE  KR    LK +  M +   +    +      +L  GPPGTGKT +A+ VA   C  
Sbjct: 280 GLERVKRQVAALKSSTAMALARAERGLPVAQTSNHMLFAGPPGTGKTTIARVVAKIYCGL 339

Query: 274 ----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 329
               K     +S + ++ ++ G+SE     + + A       +FLDE   ++      + 
Sbjct: 340 GVLRKPLVREVSRADLIGQYIGESEAKTNEIIDSALGGV---LFLDEAYTLVETGYGQKD 396

Query: 330 EHEASRRLKTELLIQMDGLTQSDELVFVLA 359
                      LL +M+     D LV + A
Sbjct: 397 PFGLE--AIDTLLARME--NDRDRLVVIGA 422

This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc [Protein fate, Protein and peptide secretion and trafficking]. Length = 557

>gnl|CDD|236828 PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 23/149 (15%)

Query: 253 LLFGPPGTGKTMLAKAVA------------TECKTTFFNISASSVVSKWRGDSEKLIKVL 300
           LL G  G GKT +A+ +A             +C     +I +    +K+RGD EK  K L
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270

Query: 301 FELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTEL---LIQMDGLTQSDELVFV 357
            +       S +F+DEI  II     +  + +A+  +K  L    I++ G T   E    
Sbjct: 271 LKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF--- 327

Query: 358 LAATNLPWELDAAMLRRLEK-RILVPLPD 385
              +N+ +E D A+ RR +K  I  P  +
Sbjct: 328 ---SNI-FEKDRALARRFQKIDITEPSIE 352

Length = 758

>gnl|CDD|223679 COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 14/50 (28%)

Query: 218 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAK 267
           +KG E AKR L+ A            G       +LL GPPGTGKTMLA 
Sbjct: 181 VKGQEQAKRALEIAA----------AG----GHNLLLVGPPGTGKTMLAS 216

Length = 490

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 27/125 (21%)

Query: 188 PNFDSAE-TRALAESLCRDII---RGSPDVKWE--SIKGLENAKRLLKEAVVMPIKY--- 238
             F++    +   + +  D I        V ++  S  G+              +K    
Sbjct: 1   EEFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTR 60

Query: 239 ----------PKYFT------GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 282
                      K F       GL+ P +  ++ G PG+G + L K +A    T  F+I  
Sbjct: 61  GFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIA--SNTDGFHIGV 118

Query: 283 SSVVS 287
             V++
Sbjct: 119 EGVIT 123

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|129721 TIGR00635, ruvB, Holliday junction DNA helicase, RuvB subunit

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 252 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 311
           +LL+GPPG GKT LA  +A E        S  ++     GD   L  +L  L        
Sbjct: 33  LLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP--GD---LAAILTNLEEG---DV 84

Query: 312 IFLDEIDAI 320
           +F+DEI  +
Sbjct: 85  LFIDEIHRL 93

All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions [DNA metabolism, DNA replication, recombination, and repair]. Length = 305

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	496
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	100.0
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	100.0
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	100.0
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	100.0
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	100.0
KOG0736	953	consensus Peroxisome assembly factor 2 containing	100.0
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	100.0
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	100.0
KOG0740	428	consensus AAA+-type ATPase [Posttranslational modi	100.0
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	100.0
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	100.0
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	100.0
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	100.0
KOG0728	404	consensus 26S proteasome regulatory complex, ATPas	100.0
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	100.0
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	100.0
KOG0726	440	consensus 26S proteasome regulatory complex, ATPas	100.0
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	100.0
KOG0652	424	consensus 26S proteasome regulatory complex, ATPas	100.0
CHL00195	489	ycf46 Ycf46; Provisional	100.0
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	100.0
PRK03992	389	proteasome-activating nucleotidase; Provisional	100.0
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	100.0
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	100.0
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	100.0
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	100.0
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.98
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	99.97
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	99.97
CHL00176	638	ftsH cell division protein; Validated	99.97
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	99.97
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.97
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	99.96
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	99.96
KOG0732	1080	consensus AAA+-type ATPase containing the bromodom	99.96
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.96
CHL00206	2281	ycf2 Ycf2; Provisional	99.95
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	99.94
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	99.94
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	99.87
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	99.86
CHL00181	287	cbbX CbbX; Provisional	99.86
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	99.85
KOG0742	630	consensus AAA+-type ATPase [Posttranslational modi	99.84
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	99.84
PF00004	132	AAA: ATPase family associated with various cellula	99.84
KOG0736	953	consensus Peroxisome assembly factor 2 containing	99.83
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	99.81
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	99.81
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.8
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.79
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	99.79
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.78
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.76
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	99.73
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.73
PRK10865	857	protein disaggregation chaperone; Provisional	99.72
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.72
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.71
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	99.69
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.69
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	99.69
CHL00095	821	clpC Clp protease ATP binding subunit	99.68
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	99.68
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	99.67
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	99.67
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	99.66
PRK13342	413	recombination factor protein RarA; Reviewed	99.66
PLN03025	319	replication factor C subunit; Provisional	99.65
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	99.65
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.64
KOG2028	554	consensus ATPase related to the helicase subunit o	99.63
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	99.63
PRK04195	482	replication factor C large subunit; Provisional	99.62
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	99.62
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	99.61
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	99.61
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	99.6
PRK12402	337	replication factor C small subunit 2; Reviewed	99.6
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	99.6
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	99.6
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	99.6
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	99.58
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	99.57
PRK13341	725	recombination factor protein RarA/unknown domain f	99.57
PHA02544	316	44 clamp loader, small subunit; Provisional	99.57
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	99.57
PRK07940	394	DNA polymerase III subunit delta'; Validated	99.56
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	99.56
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	99.56
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	99.56
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	99.56
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	99.56
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	99.55
COG2204	464	AtoC Response regulator containing CheY-like recei	99.55
COG3829	560	RocR Transcriptional regulator containing PAS, AAA	99.55
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	99.55
PTZ00112	1164	origin recognition complex 1 protein; Provisional	99.54
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	99.53
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	99.53
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	99.53
PRK06893	229	DNA replication initiation factor; Validated	99.52
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.52
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	99.52
PRK00149	450	dnaA chromosomal replication initiation protein; R	99.51
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	99.51
PRK00440	319	rfc replication factor C small subunit; Reviewed	99.5
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	99.5
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	99.49
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	99.49
PRK08084	235	DNA replication initiation factor; Provisional	99.49
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	99.49
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	99.48
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	99.48
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	99.48
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	99.48
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	99.48
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	99.48
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	99.47
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.47
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	99.46
PRK08903	227	DnaA regulatory inactivator Hda; Validated	99.45
PRK14088	440	dnaA chromosomal replication initiation protein; P	99.45
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	99.44
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	99.44
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	99.43
PRK08727	233	hypothetical protein; Validated	99.42
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	99.41
PRK12422	445	chromosomal replication initiation protein; Provis	99.41
PRK14086	617	dnaA chromosomal replication initiation protein; P	99.39
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.39
COG3604	550	FhlA Transcriptional regulator containing GAF, AAA	99.36
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	99.36
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	99.36
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	99.36
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	99.35
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.34
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	99.34
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	99.32
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	99.32
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	99.3
PRK15424	538	propionate catabolism operon regulatory protein Pr	99.29
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	99.29
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	99.29
PRK05642	234	DNA replication initiation factor; Validated	99.29
PRK05022	509	anaerobic nitric oxide reductase transcription reg	99.28
PRK11608	326	pspF phage shock protein operon transcriptional ac	99.28
PRK14087	450	dnaA chromosomal replication initiation protein; P	99.27
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	99.26
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	99.26
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	99.24
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	99.24
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	99.24
COG0593	408	DnaA ATPase involved in DNA replication initiation	99.23
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	99.22
PRK06620	214	hypothetical protein; Validated	99.22
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	99.21
PRK05564	313	DNA polymerase III subunit delta'; Validated	99.21
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	99.21
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	99.2
PRK09112	351	DNA polymerase III subunit delta'; Validated	99.2
PHA02244	383	ATPase-like protein	99.2
COG1221	403	PspF Transcriptional regulators containing an AAA-	99.18
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	99.18
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	99.17
COG0714	329	MoxR-like ATPases [General function prediction onl	99.16
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	99.16
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.16
KOG1969	877	consensus DNA replication checkpoint protein CHL12	99.15
PRK07471	365	DNA polymerase III subunit delta'; Validated	99.15
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	99.15
PRK09087	226	hypothetical protein; Validated	99.14
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	99.14
CHL00095	821	clpC Clp protease ATP binding subunit	99.13
TIGR02915	445	PEP_resp_reg putative PEP-CTERM system response re	99.13
PRK13531	498	regulatory ATPase RavA; Provisional	99.11
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	99.1
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.09
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	99.09
smart00382	148	AAA ATPases associated with a variety of cellular	99.08
PRK08058	329	DNA polymerase III subunit delta'; Validated	99.08
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	99.07
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	99.07
PRK10865	857	protein disaggregation chaperone; Provisional	99.06
PRK07399	314	DNA polymerase III subunit delta'; Validated	99.05
PRK15115	444	response regulator GlrR; Provisional	99.05
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	99.04
PRK05707	328	DNA polymerase III subunit delta'; Validated	99.02
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	99.01
KOG0990	360	consensus Replication factor C, subunit RFC5 [Repl	99.01
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	98.99
PRK04132	846	replication factor C small subunit; Provisional	98.98
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	98.97
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	98.95
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.95
COG1239	423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	98.93
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	98.92
KOG2035	351	consensus Replication factor C, subunit RFC3 [Cell	98.92
PRK11361	457	acetoacetate metabolism regulatory protein AtoC; P	98.91
PF07726	131	AAA_3: ATPase family associated with various cellu	98.91
smart00350	509	MCM minichromosome maintenance proteins.	98.9
KOG0745	564	consensus Putative ATP-dependent Clp-type protease	98.89
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	98.89
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	98.89
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	98.86
COG0606	490	Predicted ATPase with chaperone activity [Posttran	98.86
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.86
PRK06871	325	DNA polymerase III subunit delta'; Validated	98.86
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	98.83
COG3283	511	TyrR Transcriptional regulator of aromatic amino a	98.81
PRK07993	334	DNA polymerase III subunit delta'; Validated	98.81
PRK06964	342	DNA polymerase III subunit delta'; Validated	98.81
PRK10365	441	transcriptional regulatory protein ZraR; Provision	98.81
PRK08769	319	DNA polymerase III subunit delta'; Validated	98.78
PRK08181	269	transposase; Validated	98.78
PRK12377	248	putative replication protein; Provisional	98.77
PRK06090	319	DNA polymerase III subunit delta'; Validated	98.76
PRK08116	268	hypothetical protein; Validated	98.75
PRK09862	506	putative ATP-dependent protease; Provisional	98.74
PTZ00111	915	DNA replication licensing factor MCM4; Provisional	98.73
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	98.72
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	98.72
KOG1514	767	consensus Origin recognition complex, subunit 1, a	98.72
KOG1051	898	consensus Chaperone HSP104 and related ATP-depende	98.7
PRK07952	244	DNA replication protein DnaC; Validated	98.64
PRK08699	325	DNA polymerase III subunit delta'; Validated	98.64
PRK06835	329	DNA replication protein DnaC; Validated	98.61
PRK06526	254	transposase; Provisional	98.59
PRK13765	637	ATP-dependent protease Lon; Provisional	98.56
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	98.54
KOG1051	898	consensus Chaperone HSP104 and related ATP-depende	98.53
PF13173	128	AAA_14: AAA domain	98.53
PRK06921	266	hypothetical protein; Provisional	98.48
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.44
COG1484	254	DnaC DNA replication protein [DNA replication, rec	98.43
COG3284	606	AcoR Transcriptional activator of acetoin/glycerol	98.42
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	98.42
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	98.41
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	98.41
PRK09183	259	transposase/IS protein; Provisional	98.4
KOG0478	804	consensus DNA replication licensing factor, MCM4 c	98.35
PRK13406	584	bchD magnesium chelatase subunit D; Provisional	98.33
KOG0482	721	consensus DNA replication licensing factor, MCM7 c	98.31
KOG0480	764	consensus DNA replication licensing factor, MCM6 c	98.31
PF05729	166	NACHT: NACHT domain	98.28
PF00493	331	MCM: MCM2/3/5 family This family extends the MCM d	98.25
KOG2228	408	consensus Origin recognition complex, subunit 4 [R	98.21
PRK05917	290	DNA polymerase III subunit delta'; Validated	98.2
KOG2680	454	consensus DNA helicase TIP49, TBP-interacting prot	98.19
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	98.19
COG1241	682	MCM2 Predicted ATPase involved in replication cont	98.14
PRK08939	306	primosomal protein DnaI; Reviewed	98.13
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	98.13
PRK05818	261	DNA polymerase III subunit delta'; Validated	98.11
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.03
PRK07276	290	DNA polymerase III subunit delta'; Validated	98.01
PF12774	231	AAA_6: Hydrolytic ATP binding site of dynein motor	97.98
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	97.98
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.96
PRK07132	299	DNA polymerase III subunit delta'; Validated	97.95
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	97.93
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	97.91
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	97.91
PHA00729	226	NTP-binding motif containing protein	97.89
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.86
KOG0477	854	consensus DNA replication licensing factor, MCM2 c	97.85
PRK15455	644	PrkA family serine protein kinase; Provisional	97.8
COG4650	531	RtcR Sigma54-dependent transcription regulator con	97.76
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.73
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.72
PHA02624	647	large T antigen; Provisional	97.65
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.62
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.61
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	97.6
PRK08118	167	topology modulation protein; Reviewed	97.58
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.58
KOG2170	344	consensus ATPase of the AAA+ superfamily [General	97.57
KOG1942	456	consensus DNA helicase, TBP-interacting protein [R	97.57
KOG1968	871	consensus Replication factor C, subunit RFC1 (larg	97.56
PRK07261	171	topology modulation protein; Provisional	97.55
PRK11823	446	DNA repair protein RadA; Provisional	97.54
PRK14974	336	cell division protein FtsY; Provisional	97.53
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.53
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.52
PRK00131	175	aroK shikimate kinase; Reviewed	97.51
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	97.51
COG3854	308	SpoIIIAA ncharacterized protein conserved in bacte	97.4
COG1485	367	Predicted ATPase [General function prediction only	97.39
KOG0479	818	consensus DNA replication licensing factor, MCM3 c	97.39
PF09336	62	Vps4_C: Vps4 C terminal oligomerisation domain; In	97.37
PRK13947	171	shikimate kinase; Provisional	97.34
PRK06067	234	flagellar accessory protein FlaH; Validated	97.33
PRK03839	180	putative kinase; Provisional	97.3
cd01394	218	radB RadB. The archaeal protein radB shares simila	97.28
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.27
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	97.25
PRK09376	416	rho transcription termination factor Rho; Provisio	97.25
PF05707	193	Zot: Zonular occludens toxin (Zot); InterPro: IPR0	97.24
PRK00625	173	shikimate kinase; Provisional	97.24
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	97.24
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.23
PRK06762	166	hypothetical protein; Provisional	97.22
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	97.2
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.18
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	97.16
COG3267	269	ExeA Type II secretory pathway, component ExeA (pr	97.16
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	97.16
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.15
PRK13949	169	shikimate kinase; Provisional	97.15
KOG0481	729	consensus DNA replication licensing factor, MCM5 c	97.14
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.14
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.14
PRK14532	188	adenylate kinase; Provisional	97.14
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.13
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.13
TIGR02688	449	conserved hypothetical protein TIGR02688. Members	97.13
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	97.13
PHA02774	613	E1; Provisional	97.12
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.12
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	97.12
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.11
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.11
cd01128	249	rho_factor Transcription termination factor rho is	97.11
PRK04296	190	thymidine kinase; Provisional	97.09
PF14516	331	AAA_35: AAA-like domain	97.07
cd00983	325	recA RecA is a bacterial enzyme which has roles in	97.06
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.06
PRK06217	183	hypothetical protein; Validated	97.06
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	97.06
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	97.05
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	97.05
PRK13948	182	shikimate kinase; Provisional	97.05
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.04
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.04
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.04
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.03
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.02
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.01
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	97.01
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	97.0
PRK06581	263	DNA polymerase III subunit delta'; Validated	97.0
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	96.99
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	96.99
PRK14530	215	adenylate kinase; Provisional	96.99
PRK14531	183	adenylate kinase; Provisional	96.97
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	96.96
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	96.96
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.96
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	96.96
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	96.95
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	96.92
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	96.91
PRK13695	174	putative NTPase; Provisional	96.9
PRK13946	184	shikimate kinase; Provisional	96.9
PRK05057	172	aroK shikimate kinase I; Reviewed	96.88
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	96.88
PRK03731	171	aroL shikimate kinase II; Reviewed	96.87
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	96.87
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	96.87
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	96.85
PTZ00088	229	adenylate kinase 1; Provisional	96.84
PRK13764	602	ATPase; Provisional	96.81
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	96.81
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	96.8
PRK13833	323	conjugal transfer protein TrbB; Provisional	96.79
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	96.79
PRK06547	172	hypothetical protein; Provisional	96.79
PRK04841	903	transcriptional regulator MalT; Provisional	96.78
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	96.77
PRK14528	186	adenylate kinase; Provisional	96.77
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.75
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.75
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.75
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	96.73
PF13245	76	AAA_19: Part of AAA domain	96.72
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	96.72
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	96.71
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	96.71
PRK02496	184	adk adenylate kinase; Provisional	96.7
PRK04328	249	hypothetical protein; Provisional	96.7
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	96.7
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	96.68
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	96.67
PRK10416	318	signal recognition particle-docking protein FtsY;	96.67
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.67
PLN02674	244	adenylate kinase	96.67
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	96.66
cd03115	173	SRP The signal recognition particle (SRP) mediates	96.65
PLN02200	234	adenylate kinase family protein	96.64
TIGR00767	415	rho transcription termination factor Rho. Members	96.64
PRK00279	215	adk adenylate kinase; Reviewed	96.64
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	96.64
COG2804	500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	96.63
TIGR02533	486	type_II_gspE general secretory pathway protein E.	96.63
COG5245	3164	DYN1 Dynein, heavy chain [Cytoskeleton]	96.62
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	96.62
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	96.61
PRK14527	191	adenylate kinase; Provisional	96.6
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.6
PRK09354	349	recA recombinase A; Provisional	96.6
PRK04040	188	adenylate kinase; Provisional	96.6
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.59
COG1855	604	ATPase (PilT family) [General function prediction	96.53
KOG2383	467	consensus Predicted ATPase [General function predi	96.53
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.53
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	96.52
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.51
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.51
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	96.5
TIGR01448	720	recD_rel helicase, putative, RecD/TraA family. Thi	96.49
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	96.48
PRK04182	180	cytidylate kinase; Provisional	96.46
PRK01184	184	hypothetical protein; Provisional	96.44
PF09848	352	DUF2075: Uncharacterized conserved protein (DUF207	96.43
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.42
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.42
PF13479	213	AAA_24: AAA domain	96.4
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	96.39
PRK10436	462	hypothetical protein; Provisional	96.39
PRK08233	182	hypothetical protein; Provisional	96.39
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.38
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	96.37
PRK06696	223	uridine kinase; Validated	96.36
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	96.36
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	96.35
PF05272	198	VirE: Virulence-associated protein E; InterPro: IP	96.35
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	96.35
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.35
PRK13851	344	type IV secretion system protein VirB11; Provision	96.34
smart00487	201	DEXDc DEAD-like helicases superfamily.	96.33
PRK14529	223	adenylate kinase; Provisional	96.32
PLN02840	421	tRNA dimethylallyltransferase	96.32
PHA02530	300	pseT polynucleotide kinase; Provisional	96.31
PLN02165	334	adenylate isopentenyltransferase	96.31
PRK14737	186	gmk guanylate kinase; Provisional	96.31
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	96.3
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	96.29
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	96.28
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.28
PRK05541	176	adenylylsulfate kinase; Provisional	96.27
PRK04301	317	radA DNA repair and recombination protein RadA; Va	96.26
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	96.26
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	96.25
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	96.23
TIGR02538	564	type_IV_pilB type IV-A pilus assembly ATPase PilB.	96.23
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	96.23
PRK14526	211	adenylate kinase; Provisional	96.22
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	96.22
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	96.21
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	96.2
TIGR02236	310	recomb_radA DNA repair and recombination protein R	96.2
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	96.2
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	96.18
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	96.15
PRK10867	433	signal recognition particle protein; Provisional	96.14
PRK00889	175	adenylylsulfate kinase; Provisional	96.13
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	96.13
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	96.13
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	96.12
TIGR00959	428	ffh signal recognition particle protein. This mode	96.12
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	96.08
PLN02199	303	shikimate kinase	96.08
PLN02748	468	tRNA dimethylallyltransferase	96.06
PF12780	268	AAA_8: P-loop containing dynein motor region D4; I	96.05
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	96.03
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	96.01
TIGR01613	304	primase_Cterm phage/plasmid primase, P4 family, C-	96.0
PRK08099	399	bifunctional DNA-binding transcriptional repressor	96.0
PRK12608	380	transcription termination factor Rho; Provisional	95.99
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	95.99
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	95.98
PRK12339	197	2-phosphoglycerate kinase; Provisional	95.97
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	95.97
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	95.96
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	95.94
PTZ00035	337	Rad51 protein; Provisional	95.91
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	95.89
PRK04132	846	replication factor C small subunit; Provisional	95.89
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	95.87
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	95.85
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	95.85
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	95.85
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	95.83
TIGR02768	744	TraA_Ti Ti-type conjugative transfer relaxase TraA	95.83
PRK05480	209	uridine/cytidine kinase; Provisional	95.79
PRK12338	319	hypothetical protein; Provisional	95.78
PLN02459	261	probable adenylate kinase	95.76
COG2874	235	FlaH Predicted ATPases involved in biogenesis of a	95.74
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	95.73
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	95.72
PRK09302	509	circadian clock protein KaiC; Reviewed	95.71
PRK10875	615	recD exonuclease V subunit alpha; Provisional	95.69
PRK13975	196	thymidylate kinase; Provisional	95.69
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	95.68
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	95.68
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	95.67
PRK10263	1355	DNA translocase FtsK; Provisional	95.67
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	95.65
PRK10536	262	hypothetical protein; Provisional	95.63

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.5e-58  Score=460.56  Aligned_cols=381  Identities=47%  Similarity=0.751  Sum_probs=314.9

Q ss_pred             CCCCccccccchhhhhhhhcccccccCCCCCCCCCCcCCCC---CCCCCCCCcccCCchhHHHHHhhcCCCceecCCccc
Q 010975           99 EPMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEITERPVSDG---SSLNSNGHVQNTSDMAVYEQYRTQGSGSTCLNGVLA  175 (496)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (496)
                      .|.-.+|.....+.+|+..||+++...+..+ -...++..+   +..+..+......+...    ...|....       
T Consensus       103 ~p~~~r~~~~~~kt~~~~~~~~~~~~~~~~~-~~~r~~~~s~t~~~s~~~~~~~~~~~~~~----~~~~~~~~-------  170 (491)
T KOG0738|consen  103 KPVERRPAPASRKTRPSSPFGKKKAPTTAAS-PAGRPIGKSSTQNLSTDRADSSTARETNG----ESKGLGNS-------  170 (491)
T ss_pred             CccccCCCccccccccccccCCCCCCCCCCC-CCCCCCCCccccCCCCCcccccccccccc----cccccccc-------
Confidence            3445679999999999999999984221111 112223222   11112222111111100    00111111       


Q ss_pred             cccccccCCCCCCCCCcHHHH-HHHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeee
Q 010975          176 NVINERLQKPLLPNFDSAETR-ALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILL  254 (496)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL  254 (496)
                      +.....-.++..+.|++.... .+++.+.+++....|+++|+||.|++++|+.|+|.+..|+..|++|.++..||++||+
T Consensus       171 ~~~~~~~~~~~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm  250 (491)
T KOG0738|consen  171 NEQPHASLKGEDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLM  250 (491)
T ss_pred             cCCcccccccccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeee
Confidence            111111223445666666555 8899999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHh
Q 010975          255 FGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEAS  334 (496)
Q Consensus       255 ~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~  334 (496)
                      +||||||||+||+|+|.+++..|+.|+.+.+.++|.|++++.++-+|+.|+.+.|++|||||||+|+..|+.. .+|+.+
T Consensus       251 ~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s-~EHEaS  329 (491)
T KOG0738|consen  251 VGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS-SEHEAS  329 (491)
T ss_pred             eCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc-cchhHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999997765 789999


Q ss_pred             hhhhhhhhhhccCccccCcE---EEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCccee
Q 010975          335 RRLKTELLIQMDGLTQSDEL---VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLL  411 (496)
Q Consensus       335 ~~i~~~Ll~~ld~~~~~~~~---viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~l  411 (496)
                      +++.++||.+|||+......   |+|+|+||.||+||++++|||++.|++|+|+.+.|..+++..++......+++++.+
T Consensus       330 RRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~l  409 (491)
T KOG0738|consen  330 RRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDL  409 (491)
T ss_pred             HHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHH
Confidence            99999999999999766555   999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCcc-chhhhhhhhcccc
Q 010975          412 VERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH-LHAHRYEKFNADY  490 (496)
Q Consensus       412 a~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~-~~~~~~~~~~~~~  490 (496)
                      ++.++||||+||..+|++|++.++||.+..+..+.......+.++ .|++++||+.|+++++||++ .++.+|++|...|
T Consensus       410 ae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~-~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~ef  488 (491)
T KOG0738|consen  410 AERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPK-MPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEF  488 (491)
T ss_pred             HHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccc-cccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999887776655444444444 68999999999999999999 6799999999999


Q ss_pred             ccc
Q 010975          491 GSE  493 (496)
Q Consensus       491 g~~  493 (496)
                      ||.
T Consensus       489 GS~  491 (491)
T KOG0738|consen  489 GSC  491 (491)
T ss_pred             cCC
Confidence            984

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.1e-48  Score=408.16  Aligned_cols=270  Identities=43%  Similarity=0.665  Sum_probs=252.2

Q ss_pred             HHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          201 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       201 ~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      +..|+...+.|+++|+||+|++++|+.|++.+.+|.++|+.|.+. +.+++|||||||||||||++||++|++.+.+|+.
T Consensus       419 sa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFls  498 (693)
T KOG0730|consen  419 SALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLS  498 (693)
T ss_pred             hhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeee
Confidence            345666777899999999999999999999999999999999987 6999999999999999999999999999999999


Q ss_pred             eecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEe
Q 010975          280 ISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA  359 (496)
Q Consensus       280 v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIa  359 (496)
                      +.+.++.++|+|++|+.++.+|++|+...|+|||+||||.++..|++..  +++.++++++||..|||+... .+|+|||
T Consensus       499 vkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~--~~v~~RVlsqLLtEmDG~e~~-k~V~ViA  575 (693)
T KOG0730|consen  499 VKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS--SGVTDRVLSQLLTEMDGLEAL-KNVLVIA  575 (693)
T ss_pred             ccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc--cchHHHHHHHHHHHccccccc-CcEEEEe
Confidence            9999999999999999999999999999999999999999999987433  388899999999999999765 4599999


Q ss_pred             ccCCcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHH
Q 010975          360 ATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR  437 (496)
Q Consensus       360 tTn~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR  437 (496)
                      +||+|+.||++++|  ||++.|++|+|+.+.|.+|++.++++++...+++++.||+.|+||||+||..+|++|+..++++
T Consensus       576 ATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e  655 (693)
T KOG0730|consen  576 ATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRE  655 (693)
T ss_pred             ccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Confidence            99999999999999  9999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhccc
Q 010975          438 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNAD  489 (496)
Q Consensus       438 ~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~  489 (496)
                      .++                ...|+++||++|++.++|+.+. .++.|++|.+.
T Consensus       656 ~i~----------------a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~  692 (693)
T KOG0730|consen  656 SIE----------------ATEITWQHFEEALKAVRPSLTSELLEKYEDFAAR  692 (693)
T ss_pred             hcc----------------cccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence            654                1238999999999999999997 57999998765

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.8e-46  Score=363.03  Aligned_cols=298  Identities=49%  Similarity=0.841  Sum_probs=265.3

Q ss_pred             HHHHHHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          194 ETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +..++...+...++.+.|+++|+|+.|++.+|+.|+|.+..|.+.|.+|.....|++++||||||||||+.||+++|.+.
T Consensus       111 e~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA  190 (439)
T KOG0739|consen  111 EKKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA  190 (439)
T ss_pred             hHHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc
Confidence            34556666777888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCc
Q 010975          274 KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE  353 (496)
Q Consensus       274 ~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~  353 (496)
                      +..|+.|+.++++++|.|++++.++++|+.|+.++|+||||||||.+++.|.+.  +++.++++..+||.+|+|+-....
T Consensus       191 nSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en--EseasRRIKTEfLVQMqGVG~d~~  268 (439)
T KOG0739|consen  191 NSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN--ESEASRRIKTEFLVQMQGVGNDND  268 (439)
T ss_pred             CCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC--chHHHHHHHHHHHHhhhccccCCC
Confidence            999999999999999999999999999999999999999999999999887654  677889999999999999988888


Q ss_pred             EEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcchhhhc
Q 010975          354 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAM  432 (496)
Q Consensus       354 ~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~~~A~~  432 (496)
                      .|+|+++||-||.||.+++|||++.|++|+|+...|..+++.++...+.. .+.++.+|+++|+||+|+||.-+++.|.+
T Consensus       269 gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalm  348 (439)
T KOG0739|consen  269 GVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALM  348 (439)
T ss_pred             ceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhh
Confidence            99999999999999999999999999999999999999999999877665 46678999999999999999999999999


Q ss_pred             cHHHHHHHHhh-----cc------ccC----CCC--------------CCCCCCCCCCchhHHHHhhcCCCCccc-hhhh
Q 010975          433 QPLRRLMVLLE-----GR------QEV----APD--------------DELPQIGPIRPEDVEIALKNTRPSAHL-HAHR  482 (496)
Q Consensus       433 ~a~rR~~~~le-----~~------~~i----~~~--------------~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~  482 (496)
                      ..+|+.....-     +-      ...    .+.              +.+ -..+||+.||.+++..++|.... ++.+
T Consensus       349 ePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl-~eP~vt~~D~~k~l~~tkPTvn~~Dl~k  427 (439)
T KOG0739|consen  349 EPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKL-LEPPVTMRDFLKSLSRTKPTVNEDDLLK  427 (439)
T ss_pred             hhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhc-cCCCccHHHHHHHHhhcCCCCCHHHHHH
Confidence            99998754221     10      000    000              111 12369999999999999999986 6999


Q ss_pred             hhhhcccccccc
Q 010975          483 YEKFNADYGSEI  494 (496)
Q Consensus       483 ~~~~~~~~g~~~  494 (496)
                      .++|.++||.+.
T Consensus       428 ~~~Ft~dFGqEg  439 (439)
T KOG0739|consen  428 HEKFTEDFGQEG  439 (439)
T ss_pred             HHHHHHhhccCC
Confidence            999999999863

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.2e-47  Score=378.97  Aligned_cols=251  Identities=39%  Similarity=0.639  Sum_probs=230.8

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS  284 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~  284 (496)
                      ...+.|.++++||+|+++.+++|+|.+..|+++|++|... +.||+|||||||||||||+||||+|++.+..|+.+.+++
T Consensus       141 ~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE  220 (406)
T COG1222         141 EVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE  220 (406)
T ss_pred             eeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH
Confidence            4567899999999999999999999999999999999987 999999999999999999999999999999999999999


Q ss_pred             ccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc-hhHHhhhhhhhhhhhccCccccCcEEEEEeccCC
Q 010975          285 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNL  363 (496)
Q Consensus       285 l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~  363 (496)
                      ++.+|+|+..+.++.+|..|+..+||||||||||+++++|.+... .....++..-+||.+|||+..++ +|-||++||+
T Consensus       221 lVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~-nvKVI~ATNR  299 (406)
T COG1222         221 LVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG-NVKVIMATNR  299 (406)
T ss_pred             HHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC-CeEEEEecCC
Confidence            999999999999999999999999999999999999998864432 22334566778999999998755 4889999999


Q ss_pred             cccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHH
Q 010975          364 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL  441 (496)
Q Consensus       364 p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~  441 (496)
                      ++.|||||+|  ||++.|+||+|+.+.|.+|++.+.+++....+++++.+++.++|+||+||+++|.+|++.|+|+..  
T Consensus       300 ~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R--  377 (406)
T COG1222         300 PDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR--  377 (406)
T ss_pred             ccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc--
Confidence            9999999999  999999999999999999999999999999999999999999999999999999999999999621  


Q ss_pred             hhccccCCCCCCCCCCCCCCchhHHHHhhcCCCC
Q 010975          442 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS  475 (496)
Q Consensus       442 le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps  475 (496)
                                      ..+|++||.+|.+++...
T Consensus       378 ----------------~~Vt~~DF~~Av~KV~~~  395 (406)
T COG1222         378 ----------------DEVTMEDFLKAVEKVVKK  395 (406)
T ss_pred             ----------------CeecHHHHHHHHHHHHhc
Confidence                            238999999999887543

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5e-47  Score=396.08  Aligned_cols=291  Identities=33%  Similarity=0.573  Sum_probs=260.3

Q ss_pred             HHHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcc
Q 010975          197 ALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKT  275 (496)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~  275 (496)
                      .+..+..|+.....|+++|+||+|+++++.+|..++.+|.++|+.|..+ +..|.|||||||||||||.||+|+|++.|.
T Consensus       492 ~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~  571 (802)
T KOG0733|consen  492 KIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGA  571 (802)
T ss_pred             hcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccC
Confidence            3344567888888999999999999999999999999999999999987 888999999999999999999999999999


Q ss_pred             eeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEE
Q 010975          276 TFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV  355 (496)
Q Consensus       276 ~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~v  355 (496)
                      +|+.|.+.+|.++|+|++++.++.+|..|+...|||||+||+|.|.+.|+...  ...+.+++++||..|||+..+.+ |
T Consensus       572 NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~--s~~s~RvvNqLLtElDGl~~R~g-V  648 (802)
T KOG0733|consen  572 NFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG--SSVSSRVVNQLLTELDGLEERRG-V  648 (802)
T ss_pred             ceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC--chhHHHHHHHHHHHhcccccccc-e
Confidence            99999999999999999999999999999999999999999999999987654  56678999999999999987665 8


Q ss_pred             EEEeccCCcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCC--CCCCCCCCCcceeeeccc--CCcCCchhhcchh
Q 010975          356 FVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLP--SQTGEESLPYDLLVERTE--GYSGSDIRLVSKE  429 (496)
Q Consensus       356 iVIatTn~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~--~~~~~~~~~l~~la~~t~--g~s~~dI~~l~~~  429 (496)
                      .||++||+|+.+|+|++|  ||++.+++++|+.++|..|++.+.+  +.+...+++++++|+.+.  ||||+||..||++
T Consensus       649 ~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvre  728 (802)
T KOG0733|consen  649 YVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVRE  728 (802)
T ss_pred             EEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHH
Confidence            899999999999999999  9999999999999999999999998  677788999999998877  9999999999999


Q ss_pred             hhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhcccccc
Q 010975          430 AAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGS  492 (496)
Q Consensus       430 A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~~g~  492 (496)
                      |++.++++.+...+....-....  .....+|..||++|+++++||.++ +-..|+..++.||.
T Consensus       729 Asi~AL~~~~~~~~~~~~~~~~~--~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~L  790 (802)
T KOG0733|consen  729 ASILALRESLFEIDSSEDDVTVR--SSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRSL  790 (802)
T ss_pred             HHHHHHHHHHhhccccCccccee--eeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhcc
Confidence            99999998876443332211111  012347889999999999999996 57999999999884

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.9e-46  Score=395.24  Aligned_cols=283  Identities=32%  Similarity=0.552  Sum_probs=260.0

Q ss_pred             hCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc
Q 010975          208 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS  287 (496)
Q Consensus       208 ~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~  287 (496)
                      .+.|+++|+||+|++++|..|.+.+..|+++|++|..++.+..|||||||||||||.+|||+|.+++..|+.|.+.++..
T Consensus       664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN  743 (953)
T KOG0736|consen  664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN  743 (953)
T ss_pred             CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccc-cCcEEEEEeccCCccc
Q 010975          288 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVFVLAATNLPWE  366 (496)
Q Consensus       288 ~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-~~~~viVIatTn~p~~  366 (496)
                      .|+|++|+++|++|++|+..+|||||+||+|+++++|+..+....+.++++++||..||++.. ....|+||++||+|+.
T Consensus       744 MYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDL  823 (953)
T KOG0736|consen  744 MYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDL  823 (953)
T ss_pred             HHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccc
Confidence            999999999999999999999999999999999999998888889999999999999999986 6677999999999999


Q ss_pred             ccHHHHH--HhhhhhcccCC-CHHHHHHHHHhhCCCCCCCCCCCcceeeeccc-CCcCCchhhcchhhhccHHHHHHHHh
Q 010975          367 LDAAMLR--RLEKRILVPLP-DTEARRAMFESLLPSQTGEESLPYDLLVERTE-GYSGSDIRLVSKEAAMQPLRRLMVLL  442 (496)
Q Consensus       367 Ld~aL~r--Rf~~~I~~~~P-~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~-g~s~~dI~~l~~~A~~~a~rR~~~~l  442 (496)
                      ||++|+|  ||++.++++++ |.+.+..+++...++...+.++++.++|+.+. .|||+|+..+|..|++.|++|.++.+
T Consensus       824 LDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~i  903 (953)
T KOG0736|consen  824 LDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDI  903 (953)
T ss_pred             cChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999  99999999887 67778889999999999999999999999874 79999999999999999999999888


Q ss_pred             hccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhccccc
Q 010975          443 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYG  491 (496)
Q Consensus       443 e~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~~g  491 (496)
                      +....-. .+..+....|++|||.+++++.+||.++ ++.+|+...+.|.
T Consensus       904 e~g~~~~-~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs  952 (953)
T KOG0736|consen  904 ESGTISE-EEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS  952 (953)
T ss_pred             hhccccc-cccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence            7664322 2222344569999999999999999996 6899988877763

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-43  Score=369.54  Aligned_cols=282  Identities=35%  Similarity=0.532  Sum_probs=249.4

Q ss_pred             CCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc
Q 010975          209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS  287 (496)
Q Consensus       209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~  287 (496)
                      ..++++|+|++|+++...+|.+++.. +++|+.|..+ +.|++|||||||||||||+||+++|.+++.||+.+++.++++
T Consensus       183 ~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS  261 (802)
T KOG0733|consen  183 PESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS  261 (802)
T ss_pred             CCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc
Confidence            34588999999999999999999887 8999988876 899999999999999999999999999999999999999999


Q ss_pred             cccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcccc---CcEEEEEeccCCc
Q 010975          288 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS---DELVFVLAATNLP  364 (496)
Q Consensus       288 ~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~---~~~viVIatTn~p  364 (496)
                      .+.|+++++++.+|+.|..+.|||+||||||.+.++|...  ..+..++++.+|+..||++...   +..|+||++||+|
T Consensus       262 GvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a--qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP  339 (802)
T KOG0733|consen  262 GVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA--QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP  339 (802)
T ss_pred             ccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH--HHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence            9999999999999999999999999999999999998874  4556699999999999998654   5679999999999


Q ss_pred             ccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHh
Q 010975          365 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL  442 (496)
Q Consensus       365 ~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~l  442 (496)
                      +.||++|+|  ||++.|.+..|+..+|.+||+.+++......+.++..+|+.|.||.|+|+.+||.+|+..+++|.++..
T Consensus       340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~  419 (802)
T KOG0733|consen  340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQS  419 (802)
T ss_pred             cccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcc
Confidence            999999999  999999999999999999999999999999999999999999999999999999999999999988744


Q ss_pred             hccccCCC----------------------------------------CC----CCCCCCCCCchhHHHHhhcCCCCccc
Q 010975          443 EGRQEVAP----------------------------------------DD----ELPQIGPIRPEDVEIALKNTRPSAHL  478 (496)
Q Consensus       443 e~~~~i~~----------------------------------------~~----~~~~~~~It~eDf~~Al~~~~Ps~~~  478 (496)
                      +.-....+                                        .+    +......|+++||+.|+..+|||+.+
T Consensus       420 ~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakR  499 (802)
T KOG0733|consen  420 SSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKR  499 (802)
T ss_pred             cCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhc
Confidence            41000000                                        00    11123358999999999999999998


Q ss_pred             h---hhhhhhhccccccc
Q 010975          479 H---AHRYEKFNADYGSE  493 (496)
Q Consensus       479 ~---~~~~~~~~~~~g~~  493 (496)
                      +   ...-..|.+..|.+
T Consensus       500 EGF~tVPdVtW~dIGaL~  517 (802)
T KOG0733|consen  500 EGFATVPDVTWDDIGALE  517 (802)
T ss_pred             ccceecCCCChhhcccHH
Confidence            6   37788888877654

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.2e-42  Score=346.10  Aligned_cols=282  Identities=40%  Similarity=0.691  Sum_probs=252.1

Q ss_pred             CCCCCccchhhcchHHHHHHhhhhcccccCccccccc--cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975          209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV  286 (496)
Q Consensus       209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~--~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~  286 (496)
                      ..-.++|+||.|++.+++.+++.+..|+++|++|..+  ..+++|+||+||||||||++|+++|++.+.+|+.|+.+.+.
T Consensus        85 ~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt  164 (386)
T KOG0737|consen   85 SEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLT  164 (386)
T ss_pred             hhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccc
Confidence            3446789999999999999999999999999999654  78899999999999999999999999999999999999999


Q ss_pred             ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCc-EEEEEeccCCcc
Q 010975          287 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE-LVFVLAATNLPW  365 (496)
Q Consensus       287 ~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~-~viVIatTn~p~  365 (496)
                      ++|.|+.++.++.+|..|.+.+|+||||||+|.+.+.|  ...+|++.+.+.++|....||+....+ +|+|+++||+|.
T Consensus       165 ~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R--~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~  242 (386)
T KOG0737|consen  165 SKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR--RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPF  242 (386)
T ss_pred             hhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc--ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCc
Confidence            99999999999999999999999999999999999998  357899999999999999999976554 899999999999


Q ss_pred             cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhh--
Q 010975          366 ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE--  443 (496)
Q Consensus       366 ~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le--  443 (496)
                      ++|.++.||+...++++.|+.++|..|++-+++......++|+.++|..|+||||+||..+|+.|+..++|+.+..-.  
T Consensus       243 DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~  322 (386)
T KOG0737|consen  243 DLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGL  322 (386)
T ss_pred             cHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999887530  


Q ss_pred             -ccc-cCCCCCCCC------CCCCCCchhHHHHhhcCCCCccc---hhhhhhhhcccccc
Q 010975          444 -GRQ-EVAPDDELP------QIGPIRPEDVEIALKNTRPSAHL---HAHRYEKFNADYGS  492 (496)
Q Consensus       444 -~~~-~i~~~~~~~------~~~~It~eDf~~Al~~~~Ps~~~---~~~~~~~~~~~~g~  492 (496)
                       ... .+.+....+      ..++++++||.+|...+-++...   .....+.|++.||-
T Consensus       323 ~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e  382 (386)
T KOG0737|consen  323 LDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGE  382 (386)
T ss_pred             hhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcc
Confidence             011 111111111      15889999999999999988653   36889999998874

>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-39  Score=336.20  Aligned_cols=288  Identities=52%  Similarity=0.819  Sum_probs=258.6

Q ss_pred             HHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhccee
Q 010975          198 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF  277 (496)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~  277 (496)
                      ....+..++....+++.|+|+.|++.+|+.+.+++.+|..+++.|.....+.+++||.||||+|||+|+++||.+++..|
T Consensus       135 ~~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atf  214 (428)
T KOG0740|consen  135 LIEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATF  214 (428)
T ss_pred             hhHHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceE
Confidence            34456678888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcccc-CcEEE
Q 010975          278 FNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS-DELVF  356 (496)
Q Consensus       278 i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~-~~~vi  356 (496)
                      +.++++++.++|+|+.++.++.+|..|+..+|+|+||||+|+++..|  .+.+++.++++..+++..+++.... ..+|+
T Consensus       215 f~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R--s~~e~e~srr~ktefLiq~~~~~s~~~drvl  292 (428)
T KOG0740|consen  215 FNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR--SDNEHESSRRLKTEFLLQFDGKNSAPDDRVL  292 (428)
T ss_pred             eeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc--CCcccccchhhhhHHHhhhccccCCCCCeEE
Confidence            99999999999999999999999999999999999999999999998  3457778889999999998887544 45899


Q ss_pred             EEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcchhhhccHH
Q 010975          357 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPL  435 (496)
Q Consensus       357 VIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~  435 (496)
                      ||+|||.||.+|++++|||..++++|.|+.+.|..+|+.++.+.+.. .+.+++.+++.|+||+++||.++|++|++...
T Consensus       293 vigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~  372 (428)
T KOG0740|consen  293 VIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPL  372 (428)
T ss_pred             EEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCch
Confidence            99999999999999999999999999999999999999999888443 45678899999999999999999999999998


Q ss_pred             HHHHHH--hhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhcccccccc
Q 010975          436 RRLMVL--LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSEI  494 (496)
Q Consensus       436 rR~~~~--le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~~g~~~  494 (496)
                      +.....  ++   .+..    ...++++..||+.|++.++|+.+. .+.+|.+|+..||+.-
T Consensus       373 r~~~~~~~~~---~~~~----~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~~~  427 (428)
T KOG0740|consen  373 RELGGTTDLE---FIDA----DKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGSSE  427 (428)
T ss_pred             hhcccchhhh---hcch----hccCCCCcchHHHHHHhhccccCccccchhHHHhhhhcccc
Confidence            876552  22   1111    234679999999999999999997 5899999999999863

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=100.00  E-value=3e-39  Score=363.41  Aligned_cols=288  Identities=41%  Similarity=0.651  Sum_probs=250.4

Q ss_pred             hhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          203 CRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       203 ~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      .++.....|.++|+|++|++.+|+.|.+.+.+++.+++.+... ..+++++||+||||||||++|+++|++++.+|+.++
T Consensus       440 ~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~  519 (733)
T TIGR01243       440 IREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVR  519 (733)
T ss_pred             cchhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence            3455556789999999999999999999999999999988875 778899999999999999999999999999999999


Q ss_pred             cccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEecc
Q 010975          282 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT  361 (496)
Q Consensus       282 ~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatT  361 (496)
                      ++++.++|+|++++.++.+|..|+...|+||||||+|.+++.++... .....++++++|+..||++... ..++||+||
T Consensus       520 ~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~-~~~~~~~~~~~lL~~ldg~~~~-~~v~vI~aT  597 (733)
T TIGR01243       520 GPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF-DTSVTDRIVNQLLTEMDGIQEL-SNVVVIAAT  597 (733)
T ss_pred             hHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC-CccHHHHHHHHHHHHhhcccCC-CCEEEEEeC
Confidence            99999999999999999999999999999999999999998875432 3445678899999999998654 458899999


Q ss_pred             CCcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHH
Q 010975          362 NLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM  439 (496)
Q Consensus       362 n~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~  439 (496)
                      |+|+.+|++++|  ||++.+++++|+.++|.+||+.+..+.....+.+++.+|+.++||+|+||..+|++|++.++++..
T Consensus       598 n~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~  677 (733)
T TIGR01243       598 NRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESI  677 (733)
T ss_pred             CChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999999998  999999999999999999999999888888888999999999999999999999999999999876


Q ss_pred             HHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhcccccc
Q 010975          440 VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGS  492 (496)
Q Consensus       440 ~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~~g~  492 (496)
                      ...................+|+++||..|+++++||.++ ++..|++|.+.||.
T Consensus       678 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~~~  731 (733)
T TIGR01243       678 GSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKR  731 (733)
T ss_pred             hhccchhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence            533211110000111123469999999999999999997 58999999999974

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.1e-39  Score=332.40  Aligned_cols=241  Identities=35%  Similarity=0.568  Sum_probs=218.6

Q ss_pred             CCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccc
Q 010975          211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW  289 (496)
Q Consensus       211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~  289 (496)
                      .+++|+|+-|.|++|++|.|++.. ++.|.-|.++ ...|+||||+||||||||+||||+|.+.+.||+..+++++-..|
T Consensus       299 ~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~  377 (752)
T KOG0734|consen  299 KNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF  377 (752)
T ss_pred             cccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence            478899999999999999997754 6677777776 77889999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccH
Q 010975          290 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA  369 (496)
Q Consensus       290 ~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~  369 (496)
                      +|...++++.+|..|+...||||||||||.++++|.....  ...++.+++||..|||+.... .|+||++||.|+.||+
T Consensus       378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~--~y~kqTlNQLLvEmDGF~qNe-GiIvigATNfpe~LD~  454 (752)
T KOG0734|consen  378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQ--HYAKQTLNQLLVEMDGFKQNE-GIIVIGATNFPEALDK  454 (752)
T ss_pred             hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHH--HHHHHHHHHHHHHhcCcCcCC-ceEEEeccCChhhhhH
Confidence            9999999999999999999999999999999998765433  377999999999999997654 5889999999999999


Q ss_pred             HHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcccc
Q 010975          370 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE  447 (496)
Q Consensus       370 aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~  447 (496)
                      +|.|  ||+++|.+|.||..-|.+|++.|+.+.....++|..-+|+-|.||+|+|+.++++.|+..|...      +.  
T Consensus       455 AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d------ga--  526 (752)
T KOG0734|consen  455 ALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD------GA--  526 (752)
T ss_pred             HhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc------Cc--
Confidence            9999  9999999999999999999999999999999999999999999999999999999999887552      11  


Q ss_pred             CCCCCCCCCCCCCCchhHHHHhhcCC
Q 010975          448 VAPDDELPQIGPIRPEDVEIALKNTR  473 (496)
Q Consensus       448 i~~~~~~~~~~~It~eDf~~Al~~~~  473 (496)
                                ..+||.|++.|-.++-
T Consensus       527 ----------~~VtM~~LE~akDrIl  542 (752)
T KOG0734|consen  527 ----------EMVTMKHLEFAKDRIL  542 (752)
T ss_pred             ----------ccccHHHHhhhhhhee
Confidence                      2389999999887774

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=100.00  E-value=1.4e-37  Score=297.81  Aligned_cols=247  Identities=33%  Similarity=0.483  Sum_probs=210.6

Q ss_pred             CCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc
Q 010975          209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK  288 (496)
Q Consensus       209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~  288 (496)
                      ..++.+++|++|++++|+.-.-+ ...+.+|+.|..+.  |++||+|||||||||++|+++|++.+.|++.+.+.++.++
T Consensus       114 ~~~~it~ddViGqEeAK~kcrli-~~yLenPe~Fg~WA--PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe  190 (368)
T COG1223         114 IISDITLDDVIGQEEAKRKCRLI-MEYLENPERFGDWA--PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE  190 (368)
T ss_pred             hhccccHhhhhchHHHHHHHHHH-HHHhhChHHhcccC--cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence            45778899999999999875433 33456677776663  5899999999999999999999999999999999999999


Q ss_pred             ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccccc
Q 010975          289 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD  368 (496)
Q Consensus       289 ~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld  368 (496)
                      ++|...+.++++++.|+...|||+||||+|.++-+|+-.....+ ...++++||..|||+.. +..|+.||+||+|+.||
T Consensus       191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGD-VsEiVNALLTelDgi~e-neGVvtIaaTN~p~~LD  268 (368)
T COG1223         191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGD-VSEIVNALLTELDGIKE-NEGVVTIAATNRPELLD  268 (368)
T ss_pred             HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhccc-HHHHHHHHHHhccCccc-CCceEEEeecCChhhcC
Confidence            99999999999999999999999999999999988754333222 35678999999999984 45588999999999999


Q ss_pred             HHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhh-cchhhhccHHHHHHHHhhcccc
Q 010975          369 AAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRL-VSKEAAMQPLRRLMVLLEGRQE  447 (496)
Q Consensus       369 ~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~-l~~~A~~~a~rR~~~~le~~~~  447 (496)
                      +++++||+..|+|.+|+.+||.+|++.+++..+...+.+++.+++.+.|+||+||.. +++.|..+|+.+      ++  
T Consensus       269 ~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~e------d~--  340 (368)
T COG1223         269 PAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAE------DR--  340 (368)
T ss_pred             HHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHh------ch--
Confidence            999999999999999999999999999999999999999999999999999999976 445555555442      11  


Q ss_pred             CCCCCCCCCCCCCCchhHHHHhhcCCCCccc
Q 010975          448 VAPDDELPQIGPIRPEDVEIALKNTRPSAHL  478 (496)
Q Consensus       448 i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~  478 (496)
                                ..|+.+|++.|+++.++....
T Consensus       341 ----------e~v~~edie~al~k~r~~r~~  361 (368)
T COG1223         341 ----------EKVEREDIEKALKKERKRRAP  361 (368)
T ss_pred             ----------hhhhHHHHHHHHHhhccccCC
Confidence                      238999999999987766543

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.6e-37  Score=330.99  Aligned_cols=257  Identities=46%  Similarity=0.725  Sum_probs=233.6

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhcccccCcccccc-ccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTG-LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS  283 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~-~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s  283 (496)
                      +.....+.++|+|++|++.+|+.+.+.+..++.+++.+.. ++.+++++||+||||||||++|+++|.+++.+|+.+..+
T Consensus       231 ~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~  310 (494)
T COG0464         231 GVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS  310 (494)
T ss_pred             ccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence            3445678999999999999999999999999999998877 478888999999999999999999999999999999999


Q ss_pred             cccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCC
Q 010975          284 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL  363 (496)
Q Consensus       284 ~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~  363 (496)
                      ++.++|+|+++++++.+|..|+..+||||||||+|++.+.++.....  ...+++++++..++++....+ |+||++||.
T Consensus       311 ~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~--~~~r~~~~lL~~~d~~e~~~~-v~vi~aTN~  387 (494)
T COG0464         311 ELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG--SGRRVVGQLLTELDGIEKAEG-VLVIAATNR  387 (494)
T ss_pred             HHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch--HHHHHHHHHHHHhcCCCccCc-eEEEecCCC
Confidence            99999999999999999999999999999999999999987654332  226899999999999876554 889999999


Q ss_pred             cccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCC--CCCCCcceeeecccCCcCCchhhcchhhhccHHHHHH
Q 010975          364 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTG--EESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM  439 (496)
Q Consensus       364 p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~--~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~  439 (496)
                      |+.+|++++|  ||+..+++++|+.++|.+|++.++.....  ..+.++..+++.++||+++||..+|++|++.++++..
T Consensus       388 p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~  467 (494)
T COG0464         388 PDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR  467 (494)
T ss_pred             ccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999  99999999999999999999999986554  4678899999999999999999999999999998754


Q ss_pred             HHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccchhhhhhhh
Q 010975          440 VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKF  486 (496)
Q Consensus       440 ~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~~~~~~~~  486 (496)
                                       ..++|++||..|+++++|+..     |++|
T Consensus       468 -----------------~~~~~~~~~~~a~~~~~p~~~-----~~~~  492 (494)
T COG0464         468 -----------------RREVTLDDFLDALKKIKPSVT-----YEEW  492 (494)
T ss_pred             -----------------cCCccHHHHHHHHHhcCCCCC-----hhhc
Confidence                             135899999999999999987     8888

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-36  Score=289.66  Aligned_cols=253  Identities=37%  Similarity=0.586  Sum_probs=228.4

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS  283 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s  283 (496)
                      .+.++.|+.+++=++|++..++.++|.+..|.++|++|..+ +..|+|+|||||||||||.||+++|+...+.|++++++
T Consensus       136 MmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgs  215 (404)
T KOG0728|consen  136 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS  215 (404)
T ss_pred             HhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechH
Confidence            35667899999999999999999999999999999999987 88899999999999999999999999999999999999


Q ss_pred             cccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc--chhHHhhhhhhhhhhhccCccccCcEEEEEecc
Q 010975          284 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR--SEHEASRRLKTELLIQMDGLTQSDELVFVLAAT  361 (496)
Q Consensus       284 ~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatT  361 (496)
                      +++.+|+|+..+.++.+|-.|+...|+|||.||||++++.|.++.  ++++. ++..-+|++++||+.... ++-||++|
T Consensus       216 elvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsev-qrtmlellnqldgfeatk-nikvimat  293 (404)
T KOG0728|consen  216 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEV-QRTMLELLNQLDGFEATK-NIKVIMAT  293 (404)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHH-HHHHHHHHHhcccccccc-ceEEEEec
Confidence            999999999999999999999999999999999999998875433  33333 455567899999997654 47789999


Q ss_pred             CCcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHH
Q 010975          362 NLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM  439 (496)
Q Consensus       362 n~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~  439 (496)
                      |+.+-+|++|+|  |+++.|+||+|+.+.|.+|++.+-+++.....+++..+|+...|.+|+++..+|.+|.+.++|+..
T Consensus       294 nridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerr  373 (404)
T KOG0728|consen  294 NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERR  373 (404)
T ss_pred             cccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhh
Confidence            999999999999  999999999999999999999999999999999999999999999999999999999999998521


Q ss_pred             HHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCcc
Q 010975          440 VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH  477 (496)
Q Consensus       440 ~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~  477 (496)
                                        ..+|+|||+-|..++-...+
T Consensus       374 ------------------vhvtqedfemav~kvm~k~~  393 (404)
T KOG0728|consen  374 ------------------VHVTQEDFEMAVAKVMQKDS  393 (404)
T ss_pred             ------------------ccccHHHHHHHHHHHHhccc
Confidence                              35899999999988754443

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-36  Score=321.14  Aligned_cols=239  Identities=34%  Similarity=0.615  Sum_probs=220.6

Q ss_pred             Hhhhhhh-CCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          202 LCRDIIR-GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       202 ~~~~~~~-~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      .+|.+.. +.....|+|++|+.++|+.|.+.+.+|.+||.+|... ++.+.|+|||||||||||.||.++|..++.+|+.
T Consensus       652 aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fis  731 (952)
T KOG0735|consen  652 ALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFIS  731 (952)
T ss_pred             HhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEE
Confidence            4455443 3445899999999999999999999999999999886 7788899999999999999999999999999999


Q ss_pred             eecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEe
Q 010975          280 ISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA  359 (496)
Q Consensus       280 v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIa  359 (496)
                      +.+.++.++|+|++++.+|.+|.+|+..+|||||+||+|+++++|+.+  ..++.++++++||.+|||... -..|.|+|
T Consensus       732 vKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD--sTGVTDRVVNQlLTelDG~Eg-l~GV~i~a  808 (952)
T KOG0735|consen  732 VKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD--STGVTDRVVNQLLTELDGAEG-LDGVYILA  808 (952)
T ss_pred             ecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC--CCCchHHHHHHHHHhhccccc-cceEEEEE
Confidence            999999999999999999999999999999999999999999998754  456789999999999999987 45589999


Q ss_pred             ccCCcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHH
Q 010975          360 ATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR  437 (496)
Q Consensus       360 tTn~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR  437 (496)
                      +|.+|+.+||||+|  |+++.++.+.|+..+|.+|++.+........+++++.+|..|+||+|+|+..++-.|.+.++.+
T Consensus       809 aTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~  888 (952)
T KOG0735|consen  809 ATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE  888 (952)
T ss_pred             ecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence            99999999999999  9999999999999999999999999888999999999999999999999999999999999998


Q ss_pred             HHHHhh
Q 010975          438 LMVLLE  443 (496)
Q Consensus       438 ~~~~le  443 (496)
                      .+....
T Consensus       889 ~l~~~~  894 (952)
T KOG0735|consen  889 ILKRED  894 (952)
T ss_pred             HHHhcC
Confidence            876443

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.2e-36  Score=287.34  Aligned_cols=249  Identities=38%  Similarity=0.627  Sum_probs=225.5

Q ss_pred             hCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975          208 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV  286 (496)
Q Consensus       208 ~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~  286 (496)
                      .+.|.+++.|++|++-.|++++|.+..|+.+.+++.+. +.||+|||+|||||||||+||+++|+.....|+++.+++++
T Consensus       147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv  226 (408)
T KOG0727|consen  147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV  226 (408)
T ss_pred             CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence            35688999999999999999999999999999999886 89999999999999999999999999999999999999999


Q ss_pred             ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc-hhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc
Q 010975          287 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW  365 (496)
Q Consensus       287 ~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~  365 (496)
                      .+|.|+..+.++.+|..|+.+.|+||||||+|.++.+|-+.+. ......+++-+|+++|||+.... +|-||++||+.+
T Consensus       227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~-nvkvimatnrad  305 (408)
T KOG0727|consen  227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTT-NVKVIMATNRAD  305 (408)
T ss_pred             HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCccc-ceEEEEecCccc
Confidence            9999999999999999999999999999999999998754332 23345677888999999997544 588999999999


Q ss_pred             cccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhh
Q 010975          366 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE  443 (496)
Q Consensus       366 ~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le  443 (496)
                      .+||+|+|  |+++.|+||+|+..+++-++..+..++....+++++.+..+-+..+++||..+|++|.+.++|+.     
T Consensus       306 tldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n-----  380 (408)
T KOG0727|consen  306 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN-----  380 (408)
T ss_pred             ccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc-----
Confidence            99999999  99999999999999999999999999999999999999999999999999999999999999852     


Q ss_pred             ccccCCCCCCCCCCCCCCchhHHHHhhcCCCC
Q 010975          444 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPS  475 (496)
Q Consensus       444 ~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps  475 (496)
                       +            -.+...||+++-+.....
T Consensus       381 -r------------yvvl~kd~e~ay~~~vk~  399 (408)
T KOG0727|consen  381 -R------------YVVLQKDFEKAYKTVVKK  399 (408)
T ss_pred             -c------------eeeeHHHHHHHHHhhcCC
Confidence             1            237889999988766443

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2e-36  Score=293.71  Aligned_cols=248  Identities=36%  Similarity=0.611  Sum_probs=224.7

Q ss_pred             hhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975          207 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV  285 (496)
Q Consensus       207 ~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l  285 (496)
                      .++.|..++.|++|++..+++|+|.+..|+.+|+++... +.||+||+|||+||||||.||+|+|++....|+++.++++
T Consensus       176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseL  255 (440)
T KOG0726|consen  176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL  255 (440)
T ss_pred             cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHH
Confidence            456788899999999999999999999999999999876 8999999999999999999999999999999999999999


Q ss_pred             cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc--chhHHhhhhhhhhhhhccCccccCcEEEEEeccCC
Q 010975          286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR--SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL  363 (496)
Q Consensus       286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~  363 (496)
                      ..+|.|+..+.++++|..|..++|+|+||||||.+..+|-+..  ++.+ .++..-+||+++||+..++. |-||++||+
T Consensus       256 iQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerE-iQrtmLELLNQldGFdsrgD-vKvimATnr  333 (440)
T KOG0726|consen  256 IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGERE-IQRTMLELLNQLDGFDSRGD-VKVIMATNR  333 (440)
T ss_pred             HHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHH-HHHHHHHHHHhccCccccCC-eEEEEeccc
Confidence            9999999999999999999999999999999999998875432  3333 34444578999999988665 789999999


Q ss_pred             cccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHH
Q 010975          364 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL  441 (496)
Q Consensus       364 p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~  441 (496)
                      .+.|||+|.|  |+++.|.|+.|+...++.|+..+..++....+++++.+...-+.+||+||.++|.+|.+.|+|...  
T Consensus       334 ie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerR--  411 (440)
T KOG0726|consen  334 IETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERR--  411 (440)
T ss_pred             ccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHH--
Confidence            9999999999  999999999999999999999999999999999999999888999999999999999999998532  


Q ss_pred             hhccccCCCCCCCCCCCCCCchhHHHHhhcCCC
Q 010975          442 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP  474 (496)
Q Consensus       442 le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~P  474 (496)
                                      ..+|++||.+|.+++--
T Consensus       412 ----------------m~vt~~DF~ka~e~V~~  428 (440)
T KOG0726|consen  412 ----------------MKVTMEDFKKAKEKVLY  428 (440)
T ss_pred             ----------------hhccHHHHHHHHHHHHH
Confidence                            13899999999887643

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=100.00  E-value=3.9e-36  Score=314.40  Aligned_cols=251  Identities=39%  Similarity=0.640  Sum_probs=222.6

Q ss_pred             hhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975          207 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV  285 (496)
Q Consensus       207 ~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l  285 (496)
                      ..+.|+++|+||+|++.+|++|.+.+..|+.+++.+... +.+++++||+||||||||++|+++|++++.+++.+.++++
T Consensus       136 ~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l  215 (398)
T PTZ00454        136 MSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF  215 (398)
T ss_pred             ccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence            346799999999999999999999999999999998875 7889999999999999999999999999999999999999


Q ss_pred             cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc-hhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc
Q 010975          286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP  364 (496)
Q Consensus       286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p  364 (496)
                      ..+|.|+.+..++.+|..++...|+||||||+|.++..+.+... ......+++.+++..++++.... .+.||++||++
T Consensus       216 ~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~-~v~VI~aTN~~  294 (398)
T PTZ00454        216 VQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT-NVKVIMATNRA  294 (398)
T ss_pred             HHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC-CEEEEEecCCc
Confidence            99999999999999999999999999999999999877643221 12234566788889998876544 47789999999


Q ss_pred             ccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHh
Q 010975          365 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL  442 (496)
Q Consensus       365 ~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~l  442 (496)
                      +.+|++++|  ||+..|+++.|+.++|..|++.++.+.....++++..++..++||+|+||..+|++|++.++++-    
T Consensus       295 d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~----  370 (398)
T PTZ00454        295 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN----  370 (398)
T ss_pred             hhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC----
Confidence            999999998  99999999999999999999999998888888999999999999999999999999999998751    


Q ss_pred             hccccCCCCCCCCCCCCCCchhHHHHhhcCCCCc
Q 010975          443 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSA  476 (496)
Q Consensus       443 e~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~  476 (496)
                                    ...|+++||.+|++++....
T Consensus       371 --------------~~~i~~~df~~A~~~v~~~~  390 (398)
T PTZ00454        371 --------------RYVILPKDFEKGYKTVVRKT  390 (398)
T ss_pred             --------------CCccCHHHHHHHHHHHHhcc
Confidence                          12489999999999986653

>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.9e-36  Score=285.45  Aligned_cols=249  Identities=34%  Similarity=0.578  Sum_probs=225.2

Q ss_pred             hhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975          207 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV  285 (496)
Q Consensus       207 ~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l  285 (496)
                      ..+.|...++|++|+++.+++|.|.+..|+.+++.|..+ +.||+|+|+|||||||||.+||+.|.+.+..|..+.+..+
T Consensus       162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL  241 (424)
T KOG0652|consen  162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL  241 (424)
T ss_pred             eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH
Confidence            356688889999999999999999999999999999987 8999999999999999999999999999999999999999


Q ss_pred             cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc--chhHHhhhhhhhhhhhccCccccCcEEEEEeccCC
Q 010975          286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR--SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL  363 (496)
Q Consensus       286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~  363 (496)
                      +..|+|...+.++..|..|+...|+||||||+|.++.+|.+..  ++.+ .++..-+|++++||+... ..|-||++||+
T Consensus       242 VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDRE-VQRTMLELLNQLDGFss~-~~vKviAATNR  319 (424)
T KOG0652|consen  242 VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDRE-VQRTMLELLNQLDGFSSD-DRVKVIAATNR  319 (424)
T ss_pred             HhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHH-HHHHHHHHHHhhcCCCCc-cceEEEeeccc
Confidence            9999999999999999999999999999999999998875332  2333 344556788999999765 45889999999


Q ss_pred             cccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHH
Q 010975          364 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL  441 (496)
Q Consensus       364 p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~  441 (496)
                      .+-+||+|+|  |+++.|+||.|+.+.|.+|++.+.+++....+++++++++.|++|.|+...++|-+|.+.++||-.  
T Consensus       320 vDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~a--  397 (424)
T KOG0652|consen  320 VDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGA--  397 (424)
T ss_pred             ccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccc--
Confidence            9999999999  999999999999999999999999999999999999999999999999999999999999999721  


Q ss_pred             hhccccCCCCCCCCCCCCCCchhHHHHhhcCCCC
Q 010975          442 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS  475 (496)
Q Consensus       442 le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps  475 (496)
                                      ..++.+||...+.+++..
T Consensus       398 ----------------tev~heDfmegI~eVqak  415 (424)
T KOG0652|consen  398 ----------------TEVTHEDFMEGILEVQAK  415 (424)
T ss_pred             ----------------ccccHHHHHHHHHHHHHh
Confidence                            238999999998887644

>CHL00195 ycf46 Ycf46; Provisional

Probab=100.00  E-value=1.8e-35  Score=315.79  Aligned_cols=255  Identities=24%  Similarity=0.351  Sum_probs=216.6

Q ss_pred             CCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccc
Q 010975          210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW  289 (496)
Q Consensus       210 ~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~  289 (496)
                      .++.+|+||+|++.+|+.+.+.......  .....++.+++|+||+||||||||++|+++|++++.+++.++++.+.++|
T Consensus       222 ~~~~~~~dvgGl~~lK~~l~~~~~~~~~--~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~  299 (489)
T CHL00195        222 SVNEKISDIGGLDNLKDWLKKRSTSFSK--QASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI  299 (489)
T ss_pred             CCCCCHHHhcCHHHHHHHHHHHHHHhhH--HHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence            3578899999999999999875432211  11122467789999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccH
Q 010975          290 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA  369 (496)
Q Consensus       290 ~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~  369 (496)
                      +|+++.+++.+|..++..+||||||||||.+...++. ..+.....+++..++..|++   ....|+||+|||+++.+|+
T Consensus       300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~-~~d~~~~~rvl~~lL~~l~~---~~~~V~vIaTTN~~~~Ld~  375 (489)
T CHL00195        300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSES-KGDSGTTNRVLATFITWLSE---KKSPVFVVATANNIDLLPL  375 (489)
T ss_pred             cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccC-CCCchHHHHHHHHHHHHHhc---CCCceEEEEecCChhhCCH
Confidence            9999999999999999999999999999999875432 23345667888899988874   3456899999999999999


Q ss_pred             HHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCC--CCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcc
Q 010975          370 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGE--ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR  445 (496)
Q Consensus       370 aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~--~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~  445 (496)
                      +++|  ||+..++++.|+.++|.+|++.++.+....  .+.+++.+++.|+||||+||+.+|.+|+..+..+        
T Consensus       376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~--------  447 (489)
T CHL00195        376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYE--------  447 (489)
T ss_pred             HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc--------
Confidence            9998  999999999999999999999999876533  4677889999999999999999999998776542        


Q ss_pred             ccCCCCCCCCCCCCCCchhHHHHhhcCCCCcc---chhhhhhhhccc
Q 010975          446 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAH---LHAHRYEKFNAD  489 (496)
Q Consensus       446 ~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~---~~~~~~~~~~~~  489 (496)
                                 ..++|.+||..|++++.|++.   +++..+++|...
T Consensus       448 -----------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~  483 (489)
T CHL00195        448 -----------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASS  483 (489)
T ss_pred             -----------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHc
Confidence                       135899999999999999864   358999999874

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.2e-36  Score=324.51  Aligned_cols=245  Identities=38%  Similarity=0.604  Sum_probs=218.8

Q ss_pred             CCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc
Q 010975          209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS  287 (496)
Q Consensus       209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~  287 (496)
                      ..+.++|.|+.|.+++|++|.|++.. +++|+.|..+ ...|+|+||+||||||||.||+|+|.+.|.||+.+++++++.
T Consensus       304 ~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE  382 (774)
T KOG0731|consen  304 GNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE  382 (774)
T ss_pred             CCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence            34568999999999999999998765 5677766665 899999999999999999999999999999999999999999


Q ss_pred             cccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcC--CcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc
Q 010975          288 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE--ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW  365 (496)
Q Consensus       288 ~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~--~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~  365 (496)
                      .++|....+++.+|..|+.+.|||+||||||.++..|++  ....+......+++|+..|||.... ..|+|+++||+++
T Consensus       383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~-~~vi~~a~tnr~d  461 (774)
T KOG0731|consen  383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS-KGVIVLAATNRPD  461 (774)
T ss_pred             HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC-CcEEEEeccCCcc
Confidence            999999999999999999999999999999999998852  2234455577889999999999876 6699999999999


Q ss_pred             cccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHh
Q 010975          366 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL  442 (496)
Q Consensus       366 ~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~l  442 (496)
                      .+|++|+|  ||++.+.++.|+...|.+|++.+++..... .+.++..+|.+|.||+|+||.++|++|+..++|+-.   
T Consensus       462 ~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~---  538 (774)
T KOG0731|consen  462 ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL---  538 (774)
T ss_pred             ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc---
Confidence            99999999  999999999999999999999999988885 667787899999999999999999999999998622   


Q ss_pred             hccccCCCCCCCCCCCCCCchhHHHHhhcCC
Q 010975          443 EGRQEVAPDDELPQIGPIRPEDVEIALKNTR  473 (496)
Q Consensus       443 e~~~~i~~~~~~~~~~~It~eDf~~Al~~~~  473 (496)
                                     ..|+.+||+.|++.+.
T Consensus       539 ---------------~~i~~~~~~~a~~Rvi  554 (774)
T KOG0731|consen  539 ---------------REIGTKDLEYAIERVI  554 (774)
T ss_pred             ---------------CccchhhHHHHHHHHh
Confidence                           3489999999999443

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=100.00  E-value=2.3e-35  Score=309.04  Aligned_cols=255  Identities=40%  Similarity=0.605  Sum_probs=224.3

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS  284 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~  284 (496)
                      .....|.++|+||+|++++++.|.+.+..++.+++.+... +.+++++||+||||||||++|+++|++++.+++.+++++
T Consensus       121 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~  200 (389)
T PRK03992        121 EVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE  200 (389)
T ss_pred             eecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHH
Confidence            3456789999999999999999999999999999988776 788899999999999999999999999999999999999


Q ss_pred             ccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcch-hHHhhhhhhhhhhhccCccccCcEEEEEeccCC
Q 010975          285 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNL  363 (496)
Q Consensus       285 l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~-~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~  363 (496)
                      +...|.|+.+..++.+|..++...|+||||||+|.++..+...... .....+.+..++..+++..... .+.||+|||.
T Consensus       201 l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~-~v~VI~aTn~  279 (389)
T PRK03992        201 LVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG-NVKIIAATNR  279 (389)
T ss_pred             HhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC-CEEEEEecCC
Confidence            9999999999999999999999999999999999998776543221 1223445567777888765443 5889999999


Q ss_pred             cccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHH
Q 010975          364 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL  441 (496)
Q Consensus       364 p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~  441 (496)
                      ++.+|++++|  ||+..|.+++|+.++|.+|++.++.......+.++..++..|+||+++||+.+|++|++.++++.   
T Consensus       280 ~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~---  356 (389)
T PRK03992        280 IDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD---  356 (389)
T ss_pred             hhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC---
Confidence            9999999998  99999999999999999999999998888778899999999999999999999999999988751   


Q ss_pred             hhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccch
Q 010975          442 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH  479 (496)
Q Consensus       442 le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~  479 (496)
                                     ...|+.+||.+|++.++++...+
T Consensus       357 ---------------~~~i~~~d~~~A~~~~~~~~~~~  379 (389)
T PRK03992        357 ---------------RTEVTMEDFLKAIEKVMGKEEKD  379 (389)
T ss_pred             ---------------CCCcCHHHHHHHHHHHhcccccc
Confidence                           12489999999999999987654

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.9e-35  Score=282.60  Aligned_cols=265  Identities=35%  Similarity=0.568  Sum_probs=231.6

Q ss_pred             ccCCCCCCCCCcHHHHHHHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCC
Q 010975          181 RLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPG  259 (496)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpG  259 (496)
                      .++.|+.+..++.        +.-..+++.|.+++.|++|..+.++.|+|.+..|+.+|+.|..+ +.||+|+|+|||||
T Consensus       150 qi~lplppkidps--------vtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppg  221 (435)
T KOG0729|consen  150 QIQLPLPPKIDPS--------VTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPG  221 (435)
T ss_pred             eEeccCCCCCCCc--------eeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCC
Confidence            3555555555433        22234567899999999999999999999999999999998877 89999999999999


Q ss_pred             ChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCC--cchhHHhhhh
Q 010975          260 TGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA--RSEHEASRRL  337 (496)
Q Consensus       260 tGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~--~~~~~~~~~i  337 (496)
                      ||||.+||++|+..+..|+.+-+++++.+|+|+..+.++.+|+.|+..+.||||+||||.+.+.|-+.  +++.++ ++.
T Consensus       222 tgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnev-qrt  300 (435)
T KOG0729|consen  222 TGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEV-QRT  300 (435)
T ss_pred             CchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHH-HHH
Confidence            99999999999999999999999999999999999999999999999999999999999999887543  333443 445


Q ss_pred             hhhhhhhccCccccCcEEEEEeccCCcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecc
Q 010975          338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERT  415 (496)
Q Consensus       338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t  415 (496)
                      .-+|+.++||+..+++ +-|+++||+|+.|||+|+|  |+++.++|.+|+.+.|..|++.+.+.+....++.++-+++.+
T Consensus       301 mleli~qldgfdprgn-ikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlc  379 (435)
T KOG0729|consen  301 MLELINQLDGFDPRGN-IKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLC  379 (435)
T ss_pred             HHHHHHhccCCCCCCC-eEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhC
Confidence            5678899999987765 7788999999999999999  999999999999999999999999999999999999999999


Q ss_pred             cCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCC
Q 010975          416 EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR  473 (496)
Q Consensus       416 ~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~  473 (496)
                      ..-+|++|+.+|.+|.+.++|-..                  ...|..||..|+.++.
T Consensus       380 pnstgaeirsvcteagmfairarr------------------k~atekdfl~av~kvv  419 (435)
T KOG0729|consen  380 PNSTGAEIRSVCTEAGMFAIRARR------------------KVATEKDFLDAVNKVV  419 (435)
T ss_pred             CCCcchHHHHHHHHhhHHHHHHHh------------------hhhhHHHHHHHHHHHH
Confidence            999999999999999999987321                  1268889999988764

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=100.00  E-value=4.4e-34  Score=301.04  Aligned_cols=250  Identities=36%  Similarity=0.581  Sum_probs=219.6

Q ss_pred             hhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975          207 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV  285 (496)
Q Consensus       207 ~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l  285 (496)
                      ..+.|..+|+||+|+++.++.|.+.+..++.+++++... +.+++++||+||||||||++|+++|++++.+++.+.++++
T Consensus       174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL  253 (438)
T PTZ00361        174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL  253 (438)
T ss_pred             cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh
Confidence            457789999999999999999999999999999988876 7888999999999999999999999999999999999999


Q ss_pred             cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc-hhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc
Q 010975          286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP  364 (496)
Q Consensus       286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p  364 (496)
                      ...|.|+.+..++.+|..+....|+||||||||.+...+..... ......+.+..++..++++.... .+.||++||++
T Consensus       254 ~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~-~V~VI~ATNr~  332 (438)
T PTZ00361        254 IQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG-DVKVIMATNRI  332 (438)
T ss_pred             hhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC-CeEEEEecCCh
Confidence            99999999999999999999999999999999999887643221 11223445567888888775443 47889999999


Q ss_pred             ccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHh
Q 010975          365 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL  442 (496)
Q Consensus       365 ~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~l  442 (496)
                      +.+|++++|  ||+..|.|+.|+.++|.+|++.++.+.....+++++.++..++|++++||..+|++|++.|+++-    
T Consensus       333 d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~----  408 (438)
T PTZ00361        333 ESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER----  408 (438)
T ss_pred             HHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc----
Confidence            999999987  99999999999999999999999998888888899999999999999999999999999998852    


Q ss_pred             hccccCCCCCCCCCCCCCCchhHHHHhhcCCCC
Q 010975          443 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS  475 (496)
Q Consensus       443 e~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps  475 (496)
                        +            ..||.+||.+|++++...
T Consensus       409 --r------------~~Vt~~D~~~A~~~v~~~  427 (438)
T PTZ00361        409 --R------------MKVTQADFRKAKEKVLYR  427 (438)
T ss_pred             --C------------CccCHHHHHHHHHHHHhh
Confidence              1            238999999999997543

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-33  Score=303.48  Aligned_cols=245  Identities=38%  Similarity=0.572  Sum_probs=220.1

Q ss_pred             hCCCCCccchhhcchHHHHHHhhhhcccccCcccccc-ccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975          208 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTG-LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV  286 (496)
Q Consensus       208 ~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~-~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~  286 (496)
                      +....++|.|+.|.+++|+++.|.+.. ++.|..|.. +...|+|++|+||||||||+||+++|.+.+.||+.++.++++
T Consensus       142 ~~~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FV  220 (596)
T COG0465         142 EDQVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV  220 (596)
T ss_pred             ccccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhh
Confidence            336778999999999999999998755 455555544 478889999999999999999999999999999999999999


Q ss_pred             ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCC-cchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc
Q 010975          287 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW  365 (496)
Q Consensus       287 ~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~  365 (496)
                      ..++|....++|.+|.+|++++|||+||||||.+...|+.+ ++.++.-.+.+++||..|||.. .+..|+|+++||+|+
T Consensus       221 emfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~-~~~gviviaaTNRpd  299 (596)
T COG0465         221 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-GNEGVIVIAATNRPD  299 (596)
T ss_pred             hhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC-CCCceEEEecCCCcc
Confidence            99999999999999999999999999999999999888533 3455666789999999999998 445688999999999


Q ss_pred             cccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhh
Q 010975          366 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE  443 (496)
Q Consensus       366 ~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le  443 (496)
                      -+|++|+|  ||++.|.++.||...|.+|++.+++......++++..+|+.|.|++++|+..++++|+..+.|+-.    
T Consensus       300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~----  375 (596)
T COG0465         300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNK----  375 (596)
T ss_pred             cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcC----
Confidence            99999999  999999999999999999999999999999999999999999999999999999999999998621    


Q ss_pred             ccccCCCCCCCCCCCCCCchhHHHHhhcC
Q 010975          444 GRQEVAPDDELPQIGPIRPEDVEIALKNT  472 (496)
Q Consensus       444 ~~~~i~~~~~~~~~~~It~eDf~~Al~~~  472 (496)
                                    ..|++.||.+|..++
T Consensus       376 --------------~~i~~~~i~ea~drv  390 (596)
T COG0465         376 --------------KEITMRDIEEAIDRV  390 (596)
T ss_pred             --------------eeEeccchHHHHHHH
Confidence                          348899999998877

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=100.00  E-value=2.5e-33  Score=302.53  Aligned_cols=247  Identities=37%  Similarity=0.575  Sum_probs=213.9

Q ss_pred             hCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975          208 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV  286 (496)
Q Consensus       208 ~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~  286 (496)
                      ...|.++|+|++|++++|+++.+++.. +++++.+... ..+++++||+||||||||++|+++|++++.+++.++++++.
T Consensus        47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~  125 (495)
T TIGR01241        47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV  125 (495)
T ss_pred             CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence            446788999999999999999998765 5666665543 67789999999999999999999999999999999999999


Q ss_pred             ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc-chhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc
Q 010975          287 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW  365 (496)
Q Consensus       287 ~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~  365 (496)
                      +.+.|..++.++.+|+.++...|+||||||+|.+...++... ..+.....++++|+..||++.... .++||+|||+|+
T Consensus       126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~-~v~vI~aTn~~~  204 (495)
T TIGR01241       126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT-GVIVIAATNRPD  204 (495)
T ss_pred             HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC-CeEEEEecCChh
Confidence            999999999999999999999999999999999998765432 223344577889999999886544 488999999999


Q ss_pred             cccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhh
Q 010975          366 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE  443 (496)
Q Consensus       366 ~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le  443 (496)
                      .+|++++|  ||++.+.++.|+.++|.+|++.++.......+.++..++..+.||+++||+.++++|+..+.++.     
T Consensus       205 ~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~-----  279 (495)
T TIGR01241       205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN-----  279 (495)
T ss_pred             hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence            99999998  99999999999999999999999988776667788899999999999999999999988766531     


Q ss_pred             ccccCCCCCCCCCCCCCCchhHHHHhhcCCC
Q 010975          444 GRQEVAPDDELPQIGPIRPEDVEIALKNTRP  474 (496)
Q Consensus       444 ~~~~i~~~~~~~~~~~It~eDf~~Al~~~~P  474 (496)
                                   ..+|+.+||+.|+..+..
T Consensus       280 -------------~~~i~~~~l~~a~~~~~~  297 (495)
T TIGR01241       280 -------------KTEITMNDIEEAIDRVIA  297 (495)
T ss_pred             -------------CCCCCHHHHHHHHHHHhc
Confidence                         134899999999998754

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.98  E-value=1.4e-32  Score=285.99  Aligned_cols=247  Identities=39%  Similarity=0.638  Sum_probs=214.0

Q ss_pred             hhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975          207 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV  285 (496)
Q Consensus       207 ~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l  285 (496)
                      ....|.+.|+||+|+++++++|.+.+..++.+++.+... ..+++++||+||||||||++|+++|++++.+++.+.++++
T Consensus       113 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l  192 (364)
T TIGR01242       113 VEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL  192 (364)
T ss_pred             eccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH
Confidence            346789999999999999999999999999999888765 7788999999999999999999999999999999999999


Q ss_pred             cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcch-hHHhhhhhhhhhhhccCccccCcEEEEEeccCCc
Q 010975          286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNLP  364 (496)
Q Consensus       286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~-~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p  364 (496)
                      ...+.|+....++.+|..++...|+||||||+|.+...+...... .....+.+..++..+++.... ..+.||+|||.+
T Consensus       193 ~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~-~~v~vI~ttn~~  271 (364)
T TIGR01242       193 VRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR-GNVKVIAATNRP  271 (364)
T ss_pred             HHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC-CCEEEEEecCCh
Confidence            999999999999999999999999999999999998765432211 112234456677777766443 358899999999


Q ss_pred             ccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHh
Q 010975          365 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL  442 (496)
Q Consensus       365 ~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~l  442 (496)
                      +.+|+++++  ||+..+.++.|+.++|.+|++.++.......+.++..+++.++||+++||..++++|++.++++.    
T Consensus       272 ~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~----  347 (364)
T TIGR01242       272 DILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE----  347 (364)
T ss_pred             hhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC----
Confidence            999999997  99999999999999999999999988777777889999999999999999999999999998751    


Q ss_pred             hccccCCCCCCCCCCCCCCchhHHHHhhcC
Q 010975          443 EGRQEVAPDDELPQIGPIRPEDVEIALKNT  472 (496)
Q Consensus       443 e~~~~i~~~~~~~~~~~It~eDf~~Al~~~  472 (496)
                                    ...||.+||.+|++++
T Consensus       348 --------------~~~i~~~d~~~a~~~~  363 (364)
T TIGR01242       348 --------------RDYVTMDDFIKAVEKV  363 (364)
T ss_pred             --------------CCccCHHHHHHHHHHh
Confidence                          1248999999999875

Many proteins may score above the trusted cutoff because an internal

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=8.6e-32  Score=285.69  Aligned_cols=255  Identities=34%  Similarity=0.560  Sum_probs=232.8

Q ss_pred             CCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccc
Q 010975          211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW  289 (496)
Q Consensus       211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~  289 (496)
                      +++. .+++|.......+.+.+..++.++..+... ..+++++|+|||||||||.+++++|++.+..++.+++.++..++
T Consensus       180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~  258 (693)
T KOG0730|consen  180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF  258 (693)
T ss_pred             cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence            5666 799999999999999999999999998776 88999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHhhhcC-CcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccccc
Q 010975          290 RGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD  368 (496)
Q Consensus       290 ~G~~e~~l~~lf~~a~~~~-p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld  368 (496)
                      .|++++.++..|+++...+ |++|||||+|.+++++.....   ..+++..+++..+|+.... ..++|+++||+|+.||
T Consensus       259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~---~e~Rv~sqlltL~dg~~~~-~~vivl~atnrp~sld  334 (693)
T KOG0730|consen  259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD---VESRVVSQLLTLLDGLKPD-AKVIVLAATNRPDSLD  334 (693)
T ss_pred             ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch---HHHHHHHHHHHHHhhCcCc-CcEEEEEecCCccccC
Confidence            9999999999999999999 999999999999998765433   6788999999999988744 4588999999999999


Q ss_pred             HHHHH-HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcccc
Q 010975          369 AAMLR-RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE  447 (496)
Q Consensus       369 ~aL~r-Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~  447 (496)
                      ++++| ||+..+.+..|+..+|.+|++.+.+.+....+.++..++..+.||+|+|+..+|++|+..+.|+          
T Consensus       335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~----------  404 (693)
T KOG0730|consen  335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR----------  404 (693)
T ss_pred             hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------
Confidence            99998 9999999999999999999999999998887889999999999999999999999999999886          


Q ss_pred             CCCCCCCCCCCCCCchhHHHHhhcCCCCccch---hhhhhhhccccccc
Q 010975          448 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLH---AHRYEKFNADYGSE  493 (496)
Q Consensus       448 i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~---~~~~~~~~~~~g~~  493 (496)
                                   +++||..|+..++||+..+   -..-..|.+..|.+
T Consensus       405 -------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE  440 (693)
T KOG0730|consen  405 -------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLE  440 (693)
T ss_pred             -------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHH
Confidence                         6778999999999998864   25667788777765

>TIGR03689 pup_AAA proteasome ATPase

Probab=99.97  E-value=6.1e-31  Score=280.90  Aligned_cols=272  Identities=28%  Similarity=0.465  Sum_probs=217.8

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcce-------
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTT-------  276 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~-------  276 (496)
                      .+.+..|+++|+||+|+++.++++++.+..+..+++++... +.+++++|||||||||||++|+++|++++.+       
T Consensus       171 l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~  250 (512)
T TIGR03689       171 LVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGD  250 (512)
T ss_pred             ceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCC
Confidence            34567899999999999999999999999999999998775 7888999999999999999999999998654       


Q ss_pred             ---eeeeecccccccccCChHHHHHHHHHHhhhc----CCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc
Q 010975          277 ---FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT  349 (496)
Q Consensus       277 ---~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~----~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~  349 (496)
                         |+.+..+++.++|.|+.++.++.+|+.++..    .|+||||||+|.++..++... .++..+.++++|+..||++.
T Consensus       251 ~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~-s~d~e~~il~~LL~~LDgl~  329 (512)
T TIGR03689       251 KSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV-SSDVETTVVPQLLSELDGVE  329 (512)
T ss_pred             ceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc-cchHHHHHHHHHHHHhcccc
Confidence               6677778888999999999999999988763    689999999999998765432 23345678899999999987


Q ss_pred             ccCcEEEEEeccCCcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCC-CCCC---------CCC----------
Q 010975          350 QSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQ-TGEE---------SLP----------  407 (496)
Q Consensus       350 ~~~~~viVIatTn~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~-~~~~---------~~~----------  407 (496)
                      .. ..++||+|||+++.||++++|  ||+..|+|+.|+.++|.+|++.++... +...         ..+          
T Consensus       330 ~~-~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~  408 (512)
T TIGR03689       330 SL-DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVD  408 (512)
T ss_pred             cC-CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHH
Confidence            54 458899999999999999999  999999999999999999999988642 1100         000          


Q ss_pred             -------------------cceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHH
Q 010975          408 -------------------YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIA  468 (496)
Q Consensus       408 -------------------l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~A  468 (496)
                                         -.+....++.+||++|+.+|.+|...++++.+...              ...|+++|+..|
T Consensus       409 ~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~--------------~~~~~~~~l~~a  474 (512)
T TIGR03689       409 HLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGG--------------QVGLRIEHLLAA  474 (512)
T ss_pred             HHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcC--------------CcCcCHHHHHHH
Confidence                               01133457778899999999999999988866311              134899999999


Q ss_pred             hhcCCCCccc--hhhhhhhhcccccc
Q 010975          469 LKNTRPSAHL--HAHRYEKFNADYGS  492 (496)
Q Consensus       469 l~~~~Ps~~~--~~~~~~~~~~~~g~  492 (496)
                      +..-.....+  --..-++|....|-
T Consensus       475 ~~~e~~~~~~~~~~~~~~~w~~~~~~  500 (512)
T TIGR03689       475 VLDEFRESEDLPNTTNPDDWARISGK  500 (512)
T ss_pred             HHHhhcccccCCCCCCHHHHhhhhCC
Confidence            9876544322  23556678776554

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>CHL00176 ftsH cell division protein; Validated

Probab=99.97  E-value=2.5e-31  Score=291.97  Aligned_cols=243  Identities=36%  Similarity=0.581  Sum_probs=209.7

Q ss_pred             CCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc
Q 010975          210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK  288 (496)
Q Consensus       210 ~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~  288 (496)
                      .+.++|+|++|++++|+.+.+.+.. ++.++.+... ...++++||+||||||||++|+++|.+++.+++.++++++...
T Consensus       177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~  255 (638)
T CHL00176        177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM  255 (638)
T ss_pred             CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence            4567899999999999999998755 5566665544 6778899999999999999999999999999999999999888


Q ss_pred             ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCC-cchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccc
Q 010975          289 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL  367 (496)
Q Consensus       289 ~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~L  367 (496)
                      +.|.....++.+|..++...|+||||||+|.+...++.. ...+.....++++|+..+|++... ..++||++||+++.+
T Consensus       256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~-~~ViVIaaTN~~~~L  334 (638)
T CHL00176        256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN-KGVIVIAATNRVDIL  334 (638)
T ss_pred             hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC-CCeeEEEecCchHhh
Confidence            888888899999999999999999999999998776432 223344567788899999987654 458899999999999


Q ss_pred             cHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcc
Q 010975          368 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR  445 (496)
Q Consensus       368 d~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~  445 (496)
                      |++++|  ||++.+.++.|+.++|.+|++.+++......+.++..++..+.||+++||+.++++|+..+.++-       
T Consensus       335 D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~-------  407 (638)
T CHL00176        335 DAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK-------  407 (638)
T ss_pred             hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC-------
Confidence            999998  99999999999999999999999988777777888999999999999999999999988876541       


Q ss_pred             ccCCCCCCCCCCCCCCchhHHHHhhcC
Q 010975          446 QEVAPDDELPQIGPIRPEDVEIALKNT  472 (496)
Q Consensus       446 ~~i~~~~~~~~~~~It~eDf~~Al~~~  472 (496)
                                 ...||++||+.|+..+
T Consensus       408 -----------~~~It~~dl~~Ai~rv  423 (638)
T CHL00176        408 -----------KATITMKEIDTAIDRV  423 (638)
T ss_pred             -----------CCCcCHHHHHHHHHHH
Confidence                       1248999999999876

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.4e-31  Score=260.63  Aligned_cols=250  Identities=34%  Similarity=0.550  Sum_probs=218.0

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS  284 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~  284 (496)
                      ..+...+++|+.+.|.-.....+.+.+..|+..|+++... +.+|++++||||||+|||.+|+++|..++.+++.+..++
T Consensus       122 ~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~  201 (388)
T KOG0651|consen  122 SHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSA  201 (388)
T ss_pred             hhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhh
Confidence            3445567899999999999999999999999999999994 999999999999999999999999999999999999999


Q ss_pred             ccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc-chhHHhhhhhhhhhhhccCccccCcEEEEEeccCC
Q 010975          285 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL  363 (496)
Q Consensus       285 l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~  363 (496)
                      +.++|.|++.+.+++.|..|+...|||||+||||.+++.+.... ......++.+-.|+++|++... ..+|-+|+|||+
T Consensus       202 lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~-l~rVk~ImatNr  280 (388)
T KOG0651|consen  202 LVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT-LHRVKTIMATNR  280 (388)
T ss_pred             hhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh-cccccEEEecCC
Confidence            99999999999999999999999999999999999988764322 2222334445567777887754 445889999999


Q ss_pred             cccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHH
Q 010975          364 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL  441 (496)
Q Consensus       364 p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~  441 (496)
                      |+.|+++|+|  |+++.+++|.|+...|..|++.+..........+.+.+.+.++|+.++|++..|++|.+.+++...  
T Consensus       281 pdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~--  358 (388)
T KOG0651|consen  281 PDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEER--  358 (388)
T ss_pred             ccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhh--
Confidence            9999999999  999999999999999999999988888777888889999999999999999999999988877421  


Q ss_pred             hhccccCCCCCCCCCCCCCCchhHHHHhhcCCC
Q 010975          442 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP  474 (496)
Q Consensus       442 le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~P  474 (496)
                                      ..+-+|||.++++++.-
T Consensus       359 ----------------~~vl~Ed~~k~vrk~~~  375 (388)
T KOG0651|consen  359 ----------------DEVLHEDFMKLVRKQAD  375 (388)
T ss_pred             ----------------HHHhHHHHHHHHHHHHH
Confidence                            13678899888877643

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.97  E-value=1.1e-30  Score=293.98  Aligned_cols=278  Identities=38%  Similarity=0.589  Sum_probs=232.1

Q ss_pred             CCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc
Q 010975          210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK  288 (496)
Q Consensus       210 ~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~  288 (496)
                      .++++|+||+|++++++.+.+.+..++.+++.+..+ +.+++++||+||||||||++|+++|++++.+++.+++.++.++
T Consensus       172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~  251 (733)
T TIGR01243       172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK  251 (733)
T ss_pred             CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence            477899999999999999999999999999988776 7888999999999999999999999999999999999999999


Q ss_pred             ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccccc
Q 010975          289 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD  368 (496)
Q Consensus       289 ~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld  368 (496)
                      +.|..+..++.+|+.+....|+||||||+|.+.+.+....  .+..++++.+|+..++++... ..++||++||.++.+|
T Consensus       252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~--~~~~~~~~~~Ll~~ld~l~~~-~~vivI~atn~~~~ld  328 (733)
T TIGR01243       252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT--GEVEKRVVAQLLTLMDGLKGR-GRVIVIGATNRPDALD  328 (733)
T ss_pred             cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc--chHHHHHHHHHHHHhhccccC-CCEEEEeecCChhhcC
Confidence            9999999999999999999999999999999988765432  233467788999999987654 4578899999999999


Q ss_pred             HHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhc--
Q 010975          369 AAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG--  444 (496)
Q Consensus       369 ~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~--  444 (496)
                      +++++  ||+..+.++.|+.++|.+|++.+........+.+++.+++.+.||+++|+..++++|++.+++|....-..  
T Consensus       329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~  408 (733)
T TIGR01243       329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF  408 (733)
T ss_pred             HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            99998  99999999999999999999998888777778889999999999999999999999999999987652110  


Q ss_pred             cccCCCCCCCCCCCCCCchhHHHHhhcCCCCccchh---hhhhhhccccc
Q 010975          445 RQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA---HRYEKFNADYG  491 (496)
Q Consensus       445 ~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~~---~~~~~~~~~~g  491 (496)
                      .....+.+ ......++++||..|++.++|+...+.   ..-..|.+..|
T Consensus       409 ~~~~i~~~-~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g  457 (733)
T TIGR01243       409 EAEEIPAE-VLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGG  457 (733)
T ss_pred             ccccccch-hcccccccHHHHHHHHhhccccccchhhccccccchhhccc
Confidence            01111111 112245899999999999999975432   22345554444

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=8.2e-31  Score=280.50  Aligned_cols=297  Identities=21%  Similarity=0.187  Sum_probs=235.8

Q ss_pred             CcccCCchhHHHHHhhcCCCceecCCccccccccccCCCCCCCCCcHHHHHHHHHHhhhhhhCCCCCccchhhcchHHHH
Q 010975          147 HVQNTSDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKR  226 (496)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dliG~e~vk~  226 (496)
                      +.+..+++.++++|++++++++    +++||++|.++.||.+......+...++.++           -.|++|++++|+
T Consensus       269 k~k~~~El~kL~~m~~~SaE~~----ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iL-----------d~dHYGLekVKe  333 (782)
T COG0466         269 KEKAEKELKKLETMSPMSAEAT----VIRNYLDWLLDLPWGKRSKDKLDLKKAEKIL-----------DKDHYGLEKVKE  333 (782)
T ss_pred             HHHHHHHHHHHhcCCCCCchHH----HHHHHHHHHHhCCCccccchhhhHHHHHHHh-----------cccccCchhHHH
Confidence            3456788899999999998888    9999999999999999999988888888887           679999999999


Q ss_pred             HHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc---------ccCChHHHH
Q 010975          227 LLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK---------WRGDSEKLI  297 (496)
Q Consensus       227 ~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~---------~~G~~e~~l  297 (496)
                      ++.|+++.....++.      ...-+||+||||+|||+|+++||+.+|+.|++++.+.+.++         |+|++++++
T Consensus       334 RIlEyLAV~~l~~~~------kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrI  407 (782)
T COG0466         334 RILEYLAVQKLTKKL------KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKI  407 (782)
T ss_pred             HHHHHHHHHHHhccC------CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHH
Confidence            999999887765543      11348999999999999999999999999999998777653         899999999


Q ss_pred             HHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc------------CccccCcEEEEEeccCCcc
Q 010975          298 KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD------------GLTQSDELVFVLAATNLPW  365 (496)
Q Consensus       298 ~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld------------~~~~~~~~viVIatTn~p~  365 (496)
                      -+-+.++...+| +++|||||++..+.++++.         ++||+.+|            ++...-+.|++|||+|..+
T Consensus       408 iQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPa---------SALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~  477 (782)
T COG0466         408 IQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPA---------SALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD  477 (782)
T ss_pred             HHHHHHhCCcCC-eEEeechhhccCCCCCChH---------HHHHhhcCHhhcCchhhccccCccchhheEEEeecCccc
Confidence            999999999998 9999999999888666554         33444444            3445567899999999999


Q ss_pred             cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcc
Q 010975          366 ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR  445 (496)
Q Consensus       366 ~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~  445 (496)
                      .++.+|++|++. |.++.++.+|+.+|.+.++-......+.--..-...++...-.-|+.++++|..++++|.+..+.+.
T Consensus       478 tIP~PLlDRMEi-I~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK  556 (782)
T COG0466         478 TIPAPLLDRMEV-IRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRK  556 (782)
T ss_pred             cCChHHhcceee-eeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHH
Confidence            999999999965 9999999999999999998665544222111223444544556778899999999999988876554


Q ss_pred             cc--CCCCCCCCCCCCCCchhHHHHhhcCCCCc
Q 010975          446 QE--VAPDDELPQIGPIRPEDVEIALKNTRPSA  476 (496)
Q Consensus       446 ~~--i~~~~~~~~~~~It~eDf~~Al~~~~Ps~  476 (496)
                      ..  +..... .....++..++.+-|..-+-..
T Consensus       557 ~~~~i~~~~~-k~~~~i~~~~l~~yLG~~~f~~  588 (782)
T COG0466         557 AAKKILLKKE-KSIVKIDEKNLKKYLGVPVFRY  588 (782)
T ss_pred             HHHHHHhcCc-ccceeeCHHHHHHHhCCcccCc
Confidence            32  111111 1113578888888887665443

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=9.1e-31  Score=270.54  Aligned_cols=266  Identities=29%  Similarity=0.425  Sum_probs=221.4

Q ss_pred             CCCCccch--hhcchHHHHH-HhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcc-eeeeeeccc
Q 010975          210 SPDVKWES--IKGLENAKRL-LKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKT-TFFNISASS  284 (496)
Q Consensus       210 ~~~~~l~d--liG~e~vk~~-L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~-~~i~v~~s~  284 (496)
                      .|+-+|++  |+|++..-.. .++.++...-.|+...++ ...-+|+|||||||||||.+||.|...++. +=-.|++.+
T Consensus       213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe  292 (744)
T KOG0741|consen  213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE  292 (744)
T ss_pred             CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence            46666776  7888775544 455666666666766665 667789999999999999999999999964 345678999


Q ss_pred             ccccccCChHHHHHHHHHHhhhc--------CCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEE
Q 010975          285 VVSKWRGDSEKLIKVLFELARHH--------APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF  356 (496)
Q Consensus       285 l~~~~~G~~e~~l~~lf~~a~~~--------~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi  356 (496)
                      +.++|+|++|.++|.+|..|...        .-.||++||||.++..|++..+...+.+.++++||..|||+.. ..+++
T Consensus       293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeq-LNNIL  371 (744)
T KOG0741|consen  293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQ-LNNIL  371 (744)
T ss_pred             HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHh-hhcEE
Confidence            99999999999999999988641        2249999999999999998888888999999999999999975 45589


Q ss_pred             EEeccCCcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCC----CCCCCCcceeeecccCCcCCchhhcchhh
Q 010975          357 VLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQT----GEESLPYDLLVERTEGYSGSDIRLVSKEA  430 (496)
Q Consensus       357 VIatTn~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~----~~~~~~l~~la~~t~g~s~~dI~~l~~~A  430 (496)
                      ||+-||+.+.+|+||+|  ||+..+++.+||+..|.+|++.+.+++.    ...++|+.++|..|..|||++|+.+++.|
T Consensus       372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA  451 (744)
T KOG0741|consen  372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA  451 (744)
T ss_pred             EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence            99999999999999999  9999999999999999999998876654    34688999999999999999999999999


Q ss_pred             hccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccch
Q 010975          431 AMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH  479 (496)
Q Consensus       431 ~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~  479 (496)
                      ...|+.|.+..- ....+.+.+.  +...||++||..||.+++|++-..
T Consensus       452 ~S~A~nR~vk~~-~~~~~~~~~~--e~lkV~r~DFl~aL~dVkPAFG~s  497 (744)
T KOG0741|consen  452 QSFAMNRHVKAG-GKVEVDPVAI--ENLKVTRGDFLNALEDVKPAFGIS  497 (744)
T ss_pred             HHHHHHhhhccC-cceecCchhh--hheeecHHHHHHHHHhcCcccCCC
Confidence            999999877643 2233333322  234699999999999999997743

>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=4.4e-30  Score=286.21  Aligned_cols=266  Identities=34%  Similarity=0.589  Sum_probs=227.0

Q ss_pred             CCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeec
Q 010975          209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA  282 (496)
Q Consensus       209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~  282 (496)
                      ....+.|++++|++.++..|+|.+..|+.||+.|... +.|++|+|++||||||||..|+++|..+     +..|+.-.+
T Consensus       258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg  337 (1080)
T KOG0732|consen  258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG  337 (1080)
T ss_pred             hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence            3456789999999999999999999999999999987 8999999999999999999999999988     455777778


Q ss_pred             ccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccC
Q 010975          283 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN  362 (496)
Q Consensus       283 s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn  362 (496)
                      .+..++|+|+.++.++.+|++|+..+|+|+|+||||-|++.|...+.  .....++..||..|||+..++. |+||++||
T Consensus       338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqE--qih~SIvSTLLaLmdGldsRgq-VvvigATn  414 (1080)
T KOG0732|consen  338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQE--QIHASIVSTLLALMDGLDSRGQ-VVVIGATN  414 (1080)
T ss_pred             chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHH--HhhhhHHHHHHHhccCCCCCCc-eEEEcccC
Confidence            89999999999999999999999999999999999999998765433  2335688999999999987765 88999999


Q ss_pred             CcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCC-CCcceeeecccCCcCCchhhcchhhhccHHHHHH
Q 010975          363 LPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM  439 (496)
Q Consensus       363 ~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~-~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~  439 (496)
                      +|+.+|++++|  ||++.++|++|+.+.|..|+..+-.+-..... .-++.+|+.+.||.|+||+.+|.+|++.+++|..
T Consensus       415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~  494 (1080)
T KOG0732|consen  415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSF  494 (1080)
T ss_pred             CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence            99999999999  99999999999999999999998766553322 2256699999999999999999999999999876


Q ss_pred             HHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccch
Q 010975          440 VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH  479 (496)
Q Consensus       440 ~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~  479 (496)
                      ..+.........+.  +...++.+||..|+....|+.++.
T Consensus       495 Pq~y~s~~kl~~d~--~~ikV~~~~f~~A~~~i~ps~~R~  532 (1080)
T KOG0732|consen  495 PQIYSSSDKLLIDV--ALIKVEVRDFVEAMSRITPSSRRS  532 (1080)
T ss_pred             Ceeecccccccccc--hhhhhhhHhhhhhhhccCCCCCcc
Confidence            65554433222221  122389999999999999987763

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.96  E-value=2e-29  Score=279.24  Aligned_cols=245  Identities=33%  Similarity=0.511  Sum_probs=210.6

Q ss_pred             CCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccc
Q 010975          211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW  289 (496)
Q Consensus       211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~  289 (496)
                      ....|+|+.|.+..++++.+.+... ..++.+... ...+++++|+||||||||+++++++.+++.+|+.++++++...+
T Consensus       147 ~~~~~~di~g~~~~~~~l~~i~~~~-~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~  225 (644)
T PRK10733        147 IKTTFADVAGCDEAKEEVAELVEYL-REPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF  225 (644)
T ss_pred             hhCcHHHHcCHHHHHHHHHHHHHHh-hCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence            4567999999999999999988664 334433332 55678999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCC-cchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccccc
Q 010975          290 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD  368 (496)
Q Consensus       290 ~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld  368 (496)
                      .|.....++.+|..++...|+||||||+|.++..++.. ...+....+++++++..||++... ..++||+|||+|+.+|
T Consensus       226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~-~~vivIaaTN~p~~lD  304 (644)
T PRK10733        226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPDVLD  304 (644)
T ss_pred             hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC-CCeeEEEecCChhhcC
Confidence            99999999999999999999999999999998876542 223344567889999999988654 4588999999999999


Q ss_pred             HHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccc
Q 010975          369 AAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQ  446 (496)
Q Consensus       369 ~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~  446 (496)
                      ++++|  ||++.+.++.|+.++|.+|++.++.+.+...+.++..+++.+.||+++||..+|++|+..+.++-        
T Consensus       305 ~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~--------  376 (644)
T PRK10733        305 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN--------  376 (644)
T ss_pred             HHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC--------
Confidence            99998  99999999999999999999999999888888888899999999999999999999999887640        


Q ss_pred             cCCCCCCCCCCCCCCchhHHHHhhcCCCC
Q 010975          447 EVAPDDELPQIGPIRPEDVEIALKNTRPS  475 (496)
Q Consensus       447 ~i~~~~~~~~~~~It~eDf~~Al~~~~Ps  475 (496)
                                ...|+++||+.|+..+.+.
T Consensus       377 ----------~~~i~~~d~~~a~~~v~~g  395 (644)
T PRK10733        377 ----------KRVVSMVEFEKAKDKIMMG  395 (644)
T ss_pred             ----------CCcccHHHHHHHHHHHhcc
Confidence                      1248999999999877654

>CHL00206 ycf2 Ycf2; Provisional

Probab=99.95  E-value=9e-29  Score=285.70  Aligned_cols=202  Identities=22%  Similarity=0.280  Sum_probs=163.6

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccc----------cC------------------------
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW----------RG------------------------  291 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~----------~G------------------------  291 (496)
                      +.+++||||+||||||||+||+++|.+++.||+.++++++.+.+          .|                        
T Consensus      1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206       1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred             CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence            68889999999999999999999999999999999999988643          11                        


Q ss_pred             -------ChHH--HHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc--ccCcEEEEEec
Q 010975          292 -------DSEK--LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--QSDELVFVLAA  360 (496)
Q Consensus       292 -------~~e~--~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~~~~~viVIat  360 (496)
                             ..++  .++.+|+.|+.++||||||||||.++.+..        ....+.+|+..|++..  .....|+||||
T Consensus      1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds--------~~ltL~qLLneLDg~~~~~s~~~VIVIAA 1778 (2281)
T CHL00206       1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES--------NYLSLGLLVNSLSRDCERCSTRNILVIAS 1778 (2281)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc--------ceehHHHHHHHhccccccCCCCCEEEEEe
Confidence                   1222  378899999999999999999999975411        1223678889998763  23456999999


Q ss_pred             cCCcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCC--CCCCCC-CCCcceeeecccCCcCCchhhcchhhhccHH
Q 010975          361 TNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLP--SQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPL  435 (496)
Q Consensus       361 Tn~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~--~~~~~~-~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~  435 (496)
                      ||+|+.|||||+|  ||++.|.++.|+..+|.+++..++.  ...... ..+++.+|+.|.||+|+||+++|++|+..++
T Consensus      1779 TNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAi 1858 (2281)
T CHL00206       1779 THIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISI 1858 (2281)
T ss_pred             CCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999  9999999999999999998876543  223332 2468889999999999999999999999998


Q ss_pred             HHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCC
Q 010975          436 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR  473 (496)
Q Consensus       436 rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~  473 (496)
                      ++-.                  ..|+.+|++.|+..+.
T Consensus      1859 rq~k------------------s~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206       1859 TQKK------------------SIIDTNTIRSALHRQT 1878 (2281)
T ss_pred             HcCC------------------CccCHHHHHHHHHHHH
Confidence            8621                  1267777777776554

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=6.6e-28  Score=256.82  Aligned_cols=261  Identities=20%  Similarity=0.203  Sum_probs=207.8

Q ss_pred             CCchhHHHHHhhcCCCceecCCccccccccccCCCCCCCCCcHHHHHHHHHHhhhhhhCCCCCccchhhcchHHHHHHhh
Q 010975          151 TSDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKE  230 (496)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e  230 (496)
                      ..|+.+++.+.++.+++.    +.+||++|....||.+..........++.++           -+|++|++++|+++.|
T Consensus       361 ~eEl~kL~~le~~~sEfn----vtrNYLdwlt~LPWgk~S~En~dl~~Ak~iL-----------deDHYgm~dVKeRILE  425 (906)
T KOG2004|consen  361 DEELTKLKLLEPSSSEFN----VTRNYLDWLTSLPWGKSSTENLDLARAKEIL-----------DEDHYGMEDVKERILE  425 (906)
T ss_pred             HHHHHHHhccCccccchh----HHHHHHHHHHhCCCCCCChhhhhHHHHHHhh-----------cccccchHHHHHHHHH
Confidence            456777777778777777    9999999999999999998887777777776           6799999999999999


Q ss_pred             hhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc---------cccCChHHHHHHHH
Q 010975          231 AVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS---------KWRGDSEKLIKVLF  301 (496)
Q Consensus       231 ~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~---------~~~G~~e~~l~~lf  301 (496)
                      +++........      .++-++|+||||+|||+++++||..+|+.|++++.+.+.+         .|+|.+.+++-+.+
T Consensus       426 fiAV~kLrgs~------qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~L  499 (906)
T KOG2004|consen  426 FIAVGKLRGSV------QGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCL  499 (906)
T ss_pred             HHHHHhhcccC------CCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHH
Confidence            99876654432      2345899999999999999999999999999999876543         39999999999999


Q ss_pred             HHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc------------CccccCcEEEEEeccCCcccccH
Q 010975          302 ELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD------------GLTQSDELVFVLAATNLPWELDA  369 (496)
Q Consensus       302 ~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld------------~~~~~~~~viVIatTn~p~~Ld~  369 (496)
                      +.+...+| +++|||||+++...++++.         ++||+.+|            ++...-+.|++|||+|..+.|++
T Consensus       500 K~v~t~NP-liLiDEvDKlG~g~qGDPa---------sALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~  569 (906)
T KOG2004|consen  500 KKVKTENP-LILIDEVDKLGSGHQGDPA---------SALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPP  569 (906)
T ss_pred             HhhCCCCc-eEEeehhhhhCCCCCCChH---------HHHHHhcChhhccchhhhccccccchhheEEEEeccccccCCh
Confidence            99999998 9999999999854444433         33444444            33445577999999999999999


Q ss_pred             HHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhh
Q 010975          370 AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE  443 (496)
Q Consensus       370 aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le  443 (496)
                      +|++|++. |.++-+..+|+..|.+.||-........--.+-++..+...-+-|+.+|++|..+++.|.+..+.
T Consensus       570 pLlDRMEv-IelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~  642 (906)
T KOG2004|consen  570 PLLDRMEV-IELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKIC  642 (906)
T ss_pred             hhhhhhhe-eeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            99999966 99999999999999999996655432221222333344444467888999999999887665443

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=99.94  E-value=1.6e-27  Score=241.72  Aligned_cols=167  Identities=21%  Similarity=0.225  Sum_probs=138.5

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhh-----cCCcceehhhHHHH
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARH-----HAPSTIFLDEIDAI  320 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~-----~~p~ILfIDEID~L  320 (496)
                      +.+|++++||||||||||++|+++|+++|.+++.++++++.++|+|++++.++++|..|..     .+||||||||||.+
T Consensus       145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~  224 (413)
T PLN00020        145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG  224 (413)
T ss_pred             CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence            6788999999999999999999999999999999999999999999999999999999975     46999999999999


Q ss_pred             HhhhcCCcchhHHhhhh-hhhhhhhccCcc-----------ccCcEEEEEeccCCcccccHHHHH--HhhhhhcccCCCH
Q 010975          321 ISQRGEARSEHEASRRL-KTELLIQMDGLT-----------QSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDT  386 (496)
Q Consensus       321 ~~~r~~~~~~~~~~~~i-~~~Ll~~ld~~~-----------~~~~~viVIatTn~p~~Ld~aL~r--Rf~~~I~~~~P~~  386 (496)
                      ++.++..  .....+++ ..+|+..+|+..           .....|+||+|||+|+.||++|+|  ||++.+  ..|+.
T Consensus       225 ~g~r~~~--~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~  300 (413)
T PLN00020        225 AGRFGTT--QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTR  300 (413)
T ss_pred             CCCCCCC--CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCH
Confidence            9987633  23333444 478998888631           235569999999999999999999  999854  58999


Q ss_pred             HHHHHHHHhhCCCCCCCCCCCcceeeecccC
Q 010975          387 EARRAMFESLLPSQTGEESLPYDLLVERTEG  417 (496)
Q Consensus       387 eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g  417 (496)
                      ++|.+|++.+++..... ..++..+++.+.|
T Consensus       301 e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~g  330 (413)
T PLN00020        301 EDRIGVVHGIFRDDGVS-REDVVKLVDTFPG  330 (413)
T ss_pred             HHHHHHHHHHhccCCCC-HHHHHHHHHcCCC
Confidence            99999999999876544 3344444444433

>TIGR00763 lon ATP-dependent protease La

Probab=99.87  E-value=7.6e-23  Score=231.51  Aligned_cols=288  Identities=21%  Similarity=0.196  Sum_probs=188.9

Q ss_pred             CCchhHHHHHhhcCCCceecCCccccccccccCCCCCCCCCcHHHHHHHHHHhhhhhhCCCCCccchhhcchHHHHHHhh
Q 010975          151 TSDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKE  230 (496)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e  230 (496)
                      ..++.++++|++.+.++.    +.++|+++....||.+..........++..+           -++++|++++|+++.+
T Consensus       270 ~~e~~~~~~~~~~~~~~~----~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l-----------~~~~~G~~~~k~~i~~  334 (775)
T TIGR00763       270 EKELTKLSLLEPSSSEFT----VTRNYLDWLTDLPWGKYSKENLDLKRAKEIL-----------DEDHYGLKKVKERILE  334 (775)
T ss_pred             HHHHHHHHcCCCCCchHH----HHHHHHHHHHCCCCcccccchhhHHHHHHHh-----------hhhcCChHHHHHHHHH
Confidence            345566666666666555    9999999999999988766543333333332           3569999999999999


Q ss_pred             hhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc---------ccccCChHHHHHHHH
Q 010975          231 AVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV---------SKWRGDSEKLIKVLF  301 (496)
Q Consensus       231 ~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~---------~~~~G~~e~~l~~lf  301 (496)
                      ++........      ....++||+||||||||++|+++|+.++.+++.++++.+.         ..|.|...+.+.+.+
T Consensus       335 ~~~~~~~~~~------~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l  408 (775)
T TIGR00763       335 YLAVQKLRGK------MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGL  408 (775)
T ss_pred             HHHHHHhhcC------CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHH
Confidence            8876543322      1224799999999999999999999999999999875442         247788788888888


Q ss_pred             HHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC------------ccccCcEEEEEeccCCcccccH
Q 010975          302 ELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG------------LTQSDELVFVLAATNLPWELDA  369 (496)
Q Consensus       302 ~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~------------~~~~~~~viVIatTn~p~~Ld~  369 (496)
                      ..+...+| ||||||||++.+..++..         .+.|+..+|.            .....+++++|+|||.++.+++
T Consensus       409 ~~~~~~~~-villDEidk~~~~~~~~~---------~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~  478 (775)
T TIGR00763       409 KKAKTKNP-LFLLDEIDKIGSSFRGDP---------ASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPR  478 (775)
T ss_pred             HHhCcCCC-EEEEechhhcCCccCCCH---------HHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCH
Confidence            88876666 899999999975432211         1334444431            1122346889999999999999


Q ss_pred             HHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcccc-
Q 010975          370 AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE-  447 (496)
Q Consensus       370 aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~-  447 (496)
                      +|++||. ++.++.|+.+++.+|++.++...... ....-.. ...++..-...++.+++++..+.++|.+..+-.... 
T Consensus       479 ~L~~R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~-~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~~~  556 (775)
T TIGR00763       479 PLLDRME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDE-LKITDEALLLLIKYYTREAGVRNLERQIEKICRKAAV  556 (775)
T ss_pred             HHhCCee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcce-EEECHHHHHHHHHhcChhcCChHHHHHHHHHHHHHHH
Confidence            9999996 58999999999999998877322111 0110000 111111111223345556666666665543322111 


Q ss_pred             -CC-CCCCC---CCCCCCCchhHHHHhhc
Q 010975          448 -VA-PDDEL---PQIGPIRPEDVEIALKN  471 (496)
Q Consensus       448 -i~-~~~~~---~~~~~It~eDf~~Al~~  471 (496)
                       +. .....   .-...|+.++++..+..
T Consensus       557 ~~~~~~~~~~~~~~~v~i~~~~~~~~lg~  585 (775)
T TIGR00763       557 KLVEQGEKKKSEAESVVITPDNLKKYLGK  585 (775)
T ss_pred             HHHhccCcccCCcccccCCHHHHHHhcCc
Confidence             01 01100   11245888888888763

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=99.86  E-value=2.5e-22  Score=199.75  Aligned_cols=177  Identities=19%  Similarity=0.237  Sum_probs=134.8

Q ss_pred             cchhhcchHHHHHHhhhhcccccCcccccccc---CccceeeeeCCCCChhHHHHHHHHhhh-------cceeeeeeccc
Q 010975          215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLL---SPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASS  284 (496)
Q Consensus       215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~---~~~~~vLL~GPpGtGKT~LAralA~~l-------~~~~i~v~~s~  284 (496)
                      +++++|++++|++|.+++.+..........+.   +...+++|+||||||||++|+++|+.+       ..+++.+++++
T Consensus         5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~   84 (261)
T TIGR02881         5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD   84 (261)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence            67899999999999999877755433223332   234579999999999999999999875       34788899999


Q ss_pred             ccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc
Q 010975          285 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP  364 (496)
Q Consensus       285 l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p  364 (496)
                      +.+.++|+....++.+|+.+..   +||||||+|.|....     +.......++.|+..|+..   ...+++|+++...
T Consensus        85 l~~~~~g~~~~~~~~~~~~a~~---~VL~IDE~~~L~~~~-----~~~~~~~~i~~Ll~~~e~~---~~~~~vila~~~~  153 (261)
T TIGR02881        85 LVGEYIGHTAQKTREVIKKALG---GVLFIDEAYSLARGG-----EKDFGKEAIDTLVKGMEDN---RNEFVLILAGYSD  153 (261)
T ss_pred             hhhhhccchHHHHHHHHHhccC---CEEEEechhhhccCC-----ccchHHHHHHHHHHHHhcc---CCCEEEEecCCcc
Confidence            9999999999999999988753   799999999996321     1122345567788888743   2234444444322


Q ss_pred             -----ccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975          365 -----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG  402 (496)
Q Consensus       365 -----~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~  402 (496)
                           ..+++++++||...+.++.++.+++.+|++.++.....
T Consensus       154 ~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~  196 (261)
T TIGR02881       154 EMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREY  196 (261)
T ss_pred             hhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCC
Confidence                 23788999999888999999999999999999876544

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>CHL00181 cbbX CbbX; Provisional

Probab=99.86  E-value=3.3e-22  Score=201.48  Aligned_cols=215  Identities=19%  Similarity=0.237  Sum_probs=155.1

Q ss_pred             cchhhcchHHHHHHhhhhcccccCcccccc-cc---CccceeeeeCCCCChhHHHHHHHHhhh-------cceeeeeecc
Q 010975          215 WESIKGLENAKRLLKEAVVMPIKYPKYFTG-LL---SPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISAS  283 (496)
Q Consensus       215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~-~~---~~~~~vLL~GPpGtGKT~LAralA~~l-------~~~~i~v~~s  283 (496)
                      +++++|++++|++|.+++.+.. .++.... +.   .++.+++|+||||||||++|+++|+.+       +.+++.++.+
T Consensus        22 ~~~l~Gl~~vK~~i~e~~~~~~-~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~  100 (287)
T CHL00181         22 DEELVGLAPVKTRIREIAALLL-IDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD  100 (287)
T ss_pred             HHhcCCcHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence            4589999999999999886633 2232222 22   234469999999999999999999976       2368999999


Q ss_pred             cccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCC
Q 010975          284 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL  363 (496)
Q Consensus       284 ~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~  363 (496)
                      ++.+.|.|+++.....+++++..   +||||||+|.+...+.    .......++..|+..|+..   ...++||++++.
T Consensus       101 ~l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~----~~~~~~e~~~~L~~~me~~---~~~~~vI~ag~~  170 (287)
T CHL00181        101 DLVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDN----ERDYGSEAIEILLQVMENQ---RDDLVVIFAGYK  170 (287)
T ss_pred             HHHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCC----ccchHHHHHHHHHHHHhcC---CCCEEEEEeCCc
Confidence            99999999888888888887754   8999999999864322    1223466778888888743   233556666653


Q ss_pred             cc-----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCC-cceeeec------ccCCc-CCchhhcchhh
Q 010975          364 PW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVER------TEGYS-GSDIRLVSKEA  430 (496)
Q Consensus       364 p~-----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~-l~~la~~------t~g~s-~~dI~~l~~~A  430 (496)
                      ..     .++|++++||+.++.|++|+.+++.+|++.++.+.......+ ...+...      .+.+. +++++.++..+
T Consensus       171 ~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~  250 (287)
T CHL00181        171 DRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRA  250 (287)
T ss_pred             HHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence            21     346999999999999999999999999999997655432221 1112221      12333 57888888888


Q ss_pred             hccHHHHHHH
Q 010975          431 AMQPLRRLMV  440 (496)
Q Consensus       431 ~~~a~rR~~~  440 (496)
                      ..+...|+..
T Consensus       251 ~~~~~~r~~~  260 (287)
T CHL00181        251 RMRQANRIFE  260 (287)
T ss_pred             HHHHHHHHHc
Confidence            8887777665

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=99.85  E-value=4.8e-22  Score=223.74  Aligned_cols=289  Identities=19%  Similarity=0.188  Sum_probs=194.2

Q ss_pred             CCchhHHHHHhhcCCCceecCCccccccccccCCCCCCCCCcHHHHHHHHHHhhhhhhCCCCCccchhhcchHHHHHHhh
Q 010975          151 TSDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKE  230 (496)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e  230 (496)
                      ..++.++++|++.++++.    +.++|++|.+..||.+...+......++.++           -++++|++++|+++.+
T Consensus       272 ~~e~~~~~~~~~~~~e~~----~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l-----------~~~~~g~~~vK~~i~~  336 (784)
T PRK10787        272 EAELQKLKMMSPMSAEAT----VVRGYIDWMVQVPWNARSKVKKDLRQAQEIL-----------DTDHYGLERVKDRILE  336 (784)
T ss_pred             HHHHHHHHhCCCCCchHH----HHHHHHHHHHhCCCCCCCcccccHHHHHHHh-----------hhhccCHHHHHHHHHH
Confidence            355666666666666666    9999999999999999988777777676665           5679999999999999


Q ss_pred             hhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc---------cccCChHHHHHHHH
Q 010975          231 AVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS---------KWRGDSEKLIKVLF  301 (496)
Q Consensus       231 ~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~---------~~~G~~e~~l~~lf  301 (496)
                      ++........      .....++|+||||+|||++++.+|..++.+++.++.+...+         .|.|...+.+.+.+
T Consensus       337 ~l~~~~~~~~------~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l  410 (784)
T PRK10787        337 YLAVQSRVNK------IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKM  410 (784)
T ss_pred             HHHHHHhccc------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHH
Confidence            9876543221      12246999999999999999999999999999998765432         36777777777777


Q ss_pred             HHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC------------ccccCcEEEEEeccCCcccccH
Q 010975          302 ELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG------------LTQSDELVFVLAATNLPWELDA  369 (496)
Q Consensus       302 ~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~------------~~~~~~~viVIatTn~p~~Ld~  369 (496)
                      ..+...+| ||+|||+|++..+.++.         ..+.|+..+|.            +....+.+++|+|+|.. .+++
T Consensus       411 ~~~~~~~~-villDEidk~~~~~~g~---------~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~  479 (784)
T PRK10787        411 AKVGVKNP-LFLLDEIDKMSSDMRGD---------PASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPA  479 (784)
T ss_pred             HhcCCCCC-EEEEEChhhcccccCCC---------HHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCH
Confidence            77665565 89999999997653321         12445555542            12234678999999987 5999


Q ss_pred             HHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcccc--
Q 010975          370 AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE--  447 (496)
Q Consensus       370 aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~--  447 (496)
                      +|++||. ++.+..++.++..+|++.++..+..........-...++.....-++.+.+++..+.++|.+..+-....  
T Consensus       480 aLl~R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~  558 (784)
T PRK10787        480 PLLDRME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQ  558 (784)
T ss_pred             HHhccee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHH
Confidence            9999996 5999999999999999999853221100000000111111111111233445666666665554322111  


Q ss_pred             CCCCCCCCCCCCCCchhHHHHhhcCC
Q 010975          448 VAPDDELPQIGPIRPEDVEIALKNTR  473 (496)
Q Consensus       448 i~~~~~~~~~~~It~eDf~~Al~~~~  473 (496)
                      +..... .....|+.+++.+.|..-+
T Consensus       559 ~~~~~~-~~~v~v~~~~~~~~lg~~~  583 (784)
T PRK10787        559 LLLDKS-LKHIEINGDNLHDYLGVQR  583 (784)
T ss_pred             HHhcCC-CceeeecHHHHHHHhCCCc
Confidence            000111 1224589999999887543

>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=3.7e-21  Score=194.57  Aligned_cols=248  Identities=24%  Similarity=0.343  Sum_probs=176.5

Q ss_pred             CccccccccccCCCCCCCCCc------HHHHHHHHHHh--hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccc
Q 010975          172 GVLANVINERLQKPLLPNFDS------AETRALAESLC--RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFT  243 (496)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~  243 (496)
                      .|.+.|++.++.+|.+-.-.+      .........-.  .......++..|++||-....+++|..+...-. +.+.  
T Consensus       303 ~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTa-NTK~--  379 (630)
T KOG0742|consen  303 LVTWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPIQGSRSASSRGKDPLEGVILHPSLEKRIEDLAIATA-NTKK--  379 (630)
T ss_pred             hhHHHHHHHHcCCchhhhhhccccCCCcccHHHHhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhc-cccc--
Confidence            367777777777774322111      11111111111  112223455568999988888888887553322 1111  


Q ss_pred             cccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCc-ceehhhHHHHHh
Q 010975          244 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPS-TIFLDEIDAIIS  322 (496)
Q Consensus       244 ~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~-ILfIDEID~L~~  322 (496)
                       ...+-++||+|||||||||++|+.||...|..+..++++++..-.. +.-..++.+|+.++..+.+ +|||||+|.+..
T Consensus       380 -h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~-qaVTkiH~lFDWakkS~rGLllFIDEADAFLc  457 (630)
T KOG0742|consen  380 -HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGA-QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLC  457 (630)
T ss_pred             -ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccch-HHHHHHHHHHHHHhhcccceEEEehhhHHHHH
Confidence             1235579999999999999999999999999999999888754322 3456789999999876544 889999999998


Q ss_pred             hhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975          323 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG  402 (496)
Q Consensus       323 ~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~  402 (496)
                      .|... ..++..+..+++||..-.   .....++++.+||+|.++|.++-+|++..++||+|..+||..++..|+.++..
T Consensus       458 eRnkt-ymSEaqRsaLNAlLfRTG---dqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~  533 (630)
T KOG0742|consen  458 ERNKT-YMSEAQRSALNALLFRTG---DQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYIL  533 (630)
T ss_pred             Hhchh-hhcHHHHHHHHHHHHHhc---ccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhc
Confidence            86543 445666778888887665   23445667779999999999999999999999999999999999998866543


Q ss_pred             CCCC---------------------------CcceeeecccCCcCCchhhcch
Q 010975          403 EESL---------------------------PYDLLVERTEGYSGSDIRLVSK  428 (496)
Q Consensus       403 ~~~~---------------------------~l~~la~~t~g~s~~dI~~l~~  428 (496)
                      ..+.                           .+.+.|+.|+||||++|..|+.
T Consensus       534 ~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva  586 (630)
T KOG0742|consen  534 KPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVA  586 (630)
T ss_pred             CcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHH
Confidence            2110                           1234678899999999988775

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=99.84  E-value=1.8e-21  Score=196.02  Aligned_cols=235  Identities=19%  Similarity=0.226  Sum_probs=159.3

Q ss_pred             hhhcchHHHHHHhhhhcccccCcccccc-cc---CccceeeeeCCCCChhHHHHHHHHhhhc-------ceeeeeecccc
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTG-LL---SPWKGILLFGPPGTGKTMLAKAVATECK-------TTFFNISASSV  285 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~-~~---~~~~~vLL~GPpGtGKT~LAralA~~l~-------~~~i~v~~s~l  285 (496)
                      +++|++++|++|.+++.+. ..++.... ++   .+..+++|+||||||||++|+++|+.+.       .+++.+++.++
T Consensus        23 ~l~Gl~~vk~~i~e~~~~~-~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l  101 (284)
T TIGR02880        23 ELIGLKPVKTRIREIAALL-LVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL  101 (284)
T ss_pred             hccCHHHHHHHHHHHHHHH-HHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence            6999999999999988763 33333322 22   2445899999999999999999998772       37999999999


Q ss_pred             cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc-
Q 010975          286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-  364 (496)
Q Consensus       286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p-  364 (496)
                      .+.+.|+++..++.+|+++..   +||||||+|.+...+..    ......+++.|+..|+..   ...++||++++.. 
T Consensus       102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~----~~~~~~~~~~Ll~~le~~---~~~~~vI~a~~~~~  171 (284)
T TIGR02880       102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENQ---RDDLVVILAGYKDR  171 (284)
T ss_pred             hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc----cchHHHHHHHHHHHHhcC---CCCEEEEEeCCcHH
Confidence            999999988888888888754   89999999998643221    223355667788888732   2345566666543 


Q ss_pred             -c---cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCC-cceeeecc------cC-CcCCchhhcchhhhc
Q 010975          365 -W---ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERT------EG-YSGSDIRLVSKEAAM  432 (496)
Q Consensus       365 -~---~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~-l~~la~~t------~g-~s~~dI~~l~~~A~~  432 (496)
                       +   .+++++.+||...+.||.++.+++..|++.++.+.....+.+ ...+....      +. -..+++++++..+..
T Consensus       172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~  251 (284)
T TIGR02880       172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL  251 (284)
T ss_pred             HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence             2   258999999999999999999999999999998754332211 11122210      11 124566666666666


Q ss_pred             cHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHH
Q 010975          433 QPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIA  468 (496)
Q Consensus       433 ~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~A  468 (496)
                      +...|+.....   ...+.   .+...||.+|+..+
T Consensus       252 ~~~~r~~~~~~---~~~~~---~~~~~~~~~d~~~~  281 (284)
T TIGR02880       252 RQANRLFCDLD---RVLDK---SDLETIDPEDLLAS  281 (284)
T ss_pred             HHHHHHhcCcC---CCCCH---HHHhCCCHHHHhhc
Confidence            65555543211   11111   12245777887554

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=99.84  E-value=2.7e-21  Score=170.40  Aligned_cols=130  Identities=41%  Similarity=0.662  Sum_probs=115.7

Q ss_pred             eeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcC-CcceehhhHHHHHhhhcCCcch
Q 010975          252 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSE  330 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~-p~ILfIDEID~L~~~r~~~~~~  330 (496)
                      |||+||||||||++|+.+|+.++.+++.++++++.+.+.+.....+..+|.++.... |+||+|||+|.+.+..  ....
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~--~~~~   78 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS--QPSS   78 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC--STSS
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc--cccc
Confidence            689999999999999999999999999999999998899999999999999998887 9999999999998886  2234


Q ss_pred             hHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHH-HHhhhhhcccC
Q 010975          331 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAML-RRLEKRILVPL  383 (496)
Q Consensus       331 ~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~-rRf~~~I~~~~  383 (496)
                      ......+...|+..++........++||+|||.++.++++++ +||+..+++++
T Consensus        79 ~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~  132 (132)
T PF00004_consen   79 SSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL  132 (132)
T ss_dssp             SHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred             ccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence            455677888999999988777677999999999999999999 99999888763

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=8.6e-21  Score=204.15  Aligned_cols=241  Identities=22%  Similarity=0.268  Sum_probs=194.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS  329 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~  329 (496)
                      ..+||+|+||||||++++++|+++|.+++.++|.++.+...+..+.++..+|.+|+...|+|||+-++|.+..++.+ +.
T Consensus       432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-ge  510 (953)
T KOG0736|consen  432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-GE  510 (953)
T ss_pred             eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC-ch
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999855433 12


Q ss_pred             hhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcc
Q 010975          330 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYD  409 (496)
Q Consensus       330 ~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~  409 (496)
                      +..... ....++. .|....+...++||++|+..+.+++.+++-|-.+|.++.|+.++|.+|++.++.......++...
T Consensus       511 d~rl~~-~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k  588 (953)
T KOG0736|consen  511 DARLLK-VIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLK  588 (953)
T ss_pred             hHHHHH-HHHHHHh-cccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHH
Confidence            111111 2222222 44445566779999999999999999999999999999999999999999999999988888899


Q ss_pred             eeeecccCCcCCchhhcchhhhccHHHHHHHHhh--ccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccchh----hhh
Q 010975          410 LLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE--GRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA----HRY  483 (496)
Q Consensus       410 ~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le--~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~~----~~~  483 (496)
                      .++.++.||+.+++..++......+..|..+..-  .-++........+...++++||.+|+.+.|...+..+    ..-
T Consensus       589 ~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPn  668 (953)
T KOG0736|consen  589 QLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPN  668 (953)
T ss_pred             HHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCc
Confidence            9999999999999999999885555555544321  1112223333444567999999999999988877653    567


Q ss_pred             hhhccccccc
Q 010975          484 EKFNADYGSE  493 (496)
Q Consensus       484 ~~~~~~~g~~  493 (496)
                      ..|.+..|.+
T Consensus       669 V~WdDVGGLe  678 (953)
T KOG0736|consen  669 VSWDDVGGLE  678 (953)
T ss_pred             cchhcccCHH
Confidence            8888888865

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=2e-20  Score=193.06  Aligned_cols=225  Identities=23%  Similarity=0.337  Sum_probs=172.8

Q ss_pred             CccchhhcchHHHHHHhhhhcccccCccccccccCcc-ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccC
Q 010975          213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPW-KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRG  291 (496)
Q Consensus       213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~-~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G  291 (496)
                      .+|+.++=..+.|++|.+-+....+.++++.+...++ +|.|||||||||||+++.|+|+.++..++.+..+++...   
T Consensus       198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n---  274 (457)
T KOG0743|consen  198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD---  274 (457)
T ss_pred             CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc---
Confidence            6688889899999999999999999999999887776 689999999999999999999999999999998877432   


Q ss_pred             ChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc----hh-HHhhhhhhhhhhhccCccccC-cEEEEEeccCCcc
Q 010975          292 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS----EH-EASRRLKTELLIQMDGLTQSD-ELVFVLAATNLPW  365 (496)
Q Consensus       292 ~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~----~~-~~~~~i~~~Ll~~ld~~~~~~-~~viVIatTn~p~  365 (496)
                         .-++.++......  +||+|+|||.-..-+.....    .. ..++..++.||+.+||+...- .-.+||.|||..+
T Consensus       275 ---~dLr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E  349 (457)
T KOG0743|consen  275 ---SDLRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE  349 (457)
T ss_pred             ---HHHHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence               2277777655543  79999999987543221111    11 134567889999999996654 3456788999999


Q ss_pred             cccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccC--CcCCchhh-cch-h-hhccHHHHH
Q 010975          366 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG--YSGSDIRL-VSK-E-AAMQPLRRL  438 (496)
Q Consensus       366 ~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g--~s~~dI~~-l~~-~-A~~~a~rR~  438 (496)
                      .|||||+|  |++.+|+++..+.+.-+.++..++.-..  .+.-++++.+..++  .||+++.. +.. . .+..+++++
T Consensus       350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~L  427 (457)
T KOG0743|consen  350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGL  427 (457)
T ss_pred             hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHH
Confidence            99999999  9999999999999999999999997643  12223334334333  58888875 332 2 577778888


Q ss_pred             HHHhhcccc
Q 010975          439 MVLLEGRQE  447 (496)
Q Consensus       439 ~~~le~~~~  447 (496)
                      .+.++....
T Consensus       428 v~~l~~~~~  436 (457)
T KOG0743|consen  428 VEALESKKE  436 (457)
T ss_pred             HHHHHhhhh
Confidence            877765543

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=2.7e-20  Score=183.91  Aligned_cols=185  Identities=31%  Similarity=0.446  Sum_probs=151.2

Q ss_pred             cchhhcchHHHHHHhhhhcccccCcccc--ccccCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeecc
Q 010975          215 WESIKGLENAKRLLKEAVVMPIKYPKYF--TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISAS  283 (496)
Q Consensus       215 l~dliG~e~vk~~L~e~l~~~~~~~~~~--~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s  283 (496)
                      |+.++--..+|++|..+....++..+..  ..++.-.+-+||+||||||||+|++++|+.+         ...++++++.
T Consensus       141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh  220 (423)
T KOG0744|consen  141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH  220 (423)
T ss_pred             HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence            8899999999999999886655444322  2224444569999999999999999999988         3457899999


Q ss_pred             cccccccCChHHHHHHHHHHhhhc-----CCcceehhhHHHHHhhhcC--CcchhHHhhhhhhhhhhhccCccccCcEEE
Q 010975          284 SVVSKWRGDSEKLIKVLFELARHH-----APSTIFLDEIDAIISQRGE--ARSEHEASRRLKTELLIQMDGLTQSDELVF  356 (496)
Q Consensus       284 ~l~~~~~G~~e~~l~~lf~~a~~~-----~p~ILfIDEID~L~~~r~~--~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi  356 (496)
                      .++++|.+++.+.+..+|++....     .-..++|||+++++..|..  ...+....-++++++|.++|.+... .+|+
T Consensus       221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~-~Nvl  299 (423)
T KOG0744|consen  221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY-PNVL  299 (423)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC-CCEE
Confidence            999999999999999999887642     1235678999999988743  2334445568889999999988654 4588


Q ss_pred             EEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCC
Q 010975          357 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ  400 (496)
Q Consensus       357 VIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~  400 (496)
                      +++|+|-.+.+|.|+.+|-+...++++|+.+.+.+|++.++.+.
T Consensus       300 iL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL  343 (423)
T KOG0744|consen  300 ILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEEL  343 (423)
T ss_pred             EEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999887543

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.80  E-value=2.8e-19  Score=181.90  Aligned_cols=232  Identities=22%  Similarity=0.270  Sum_probs=160.2

Q ss_pred             CCCCCccchhhcchHHHH---HHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975          209 GSPDVKWESIKGLENAKR---LLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV  285 (496)
Q Consensus       209 ~~~~~~l~dliG~e~vk~---~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l  285 (496)
                      ..++.+++|++|+++..-   -|.+.+..            ....+++|||||||||||+|+.||+.++.+|..+++..-
T Consensus        17 rmRP~~lde~vGQ~HLlg~~~~lrr~v~~------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~   84 (436)
T COG2256          17 RLRPKSLDEVVGQEHLLGEGKPLRRAVEA------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS   84 (436)
T ss_pred             HhCCCCHHHhcChHhhhCCCchHHHHHhc------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc
Confidence            345778999999998763   23333322            122689999999999999999999999999999987542


Q ss_pred             cccccCChHHHHHHHHHHhhhcC----CcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEecc
Q 010975          286 VSKWRGDSEKLIKVLFELARHHA----PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT  361 (496)
Q Consensus       286 ~~~~~G~~e~~l~~lf~~a~~~~----p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatT  361 (496)
                             .-+.++.+++.++...    ..||||||||++...             .++.||-.++    .+..++|.+||
T Consensus        85 -------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~-------------QQD~lLp~vE----~G~iilIGATT  140 (436)
T COG2256          85 -------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA-------------QQDALLPHVE----NGTIILIGATT  140 (436)
T ss_pred             -------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh-------------hhhhhhhhhc----CCeEEEEeccC
Confidence                   4567888898885432    369999999998433             3355777665    45556666777


Q ss_pred             CCc-ccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHH
Q 010975          362 NLP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV  440 (496)
Q Consensus       362 n~p-~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~  440 (496)
                      .+| ..++++|++|+.. +.+.+.+.++...++++.+..........   ..     ....+...++...+.+..|+.++
T Consensus       141 ENPsF~ln~ALlSR~~v-f~lk~L~~~di~~~l~ra~~~~~rgl~~~---~~-----~i~~~a~~~l~~~s~GD~R~aLN  211 (436)
T COG2256         141 ENPSFELNPALLSRARV-FELKPLSSEDIKKLLKRALLDEERGLGGQ---II-----VLDEEALDYLVRLSNGDARRALN  211 (436)
T ss_pred             CCCCeeecHHHhhhhhe-eeeecCCHHHHHHHHHHHHhhhhcCCCcc---cc-----cCCHHHHHHHHHhcCchHHHHHH
Confidence            666 6899999999954 88899999999999888443222111100   00     01134555556666777888888


Q ss_pred             HhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccchhhhhhhhcccc
Q 010975          441 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADY  490 (496)
Q Consensus       441 ~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~~~~~~~~~~~~  490 (496)
                      .+|-.......+.     .++.+++++.+.+..+....+-..+.+....|
T Consensus       212 ~LE~~~~~~~~~~-----~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~  256 (436)
T COG2256         212 LLELAALSAEPDE-----VLILELLEEILQRRSARFDKDGDAHYDLISAL  256 (436)
T ss_pred             HHHHHHHhcCCCc-----ccCHHHHHHHHhhhhhccCCCcchHHHHHHHH
Confidence            8876655443333     35689999999988887666554444444443

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.79  E-value=3.8e-19  Score=200.46  Aligned_cols=200  Identities=23%  Similarity=0.335  Sum_probs=149.1

Q ss_pred             HHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-----
Q 010975          199 AESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----  273 (496)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-----  273 (496)
                      .++...++.+...+.++++++|+++..+++.+.+....            .++++|+||||||||++|+++|+.+     
T Consensus       165 l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~------------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~  232 (731)
T TIGR02639       165 LEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRK------------KNNPLLVGEPGVGKTAIAEGLALRIAEGKV  232 (731)
T ss_pred             HHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCC------------CCceEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence            34455667777778889999999999999888775432            2689999999999999999999987     


Q ss_pred             -----cceeeeeeccccc--ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc
Q 010975          274 -----KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD  346 (496)
Q Consensus       274 -----~~~~i~v~~s~l~--~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld  346 (496)
                           +.+++.++++.+.  .+|.|+.+..++.+++.+....++||||||+|.+.+......+..+..+    .|...+.
T Consensus       233 p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~----~L~~~l~  308 (731)
T TIGR02639       233 PENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASN----LLKPALS  308 (731)
T ss_pred             chhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHH----HHHHHHh
Confidence                 7889999998887  4789999999999999998777899999999999876432222222222    2322232


Q ss_pred             CccccCcEEEEEeccCCc-----ccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCC-----cceeeeccc
Q 010975          347 GLTQSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-----YDLLVERTE  416 (496)
Q Consensus       347 ~~~~~~~~viVIatTn~p-----~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~-----l~~la~~t~  416 (496)
                          ++ .+.+|++||..     ...|+++.|||+. +.++.|+.+++.+|++.....+...+++.     +..++..+.
T Consensus       309 ----~g-~i~~IgaTt~~e~~~~~~~d~al~rRf~~-i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~  382 (731)
T TIGR02639       309 ----SG-KLRCIGSTTYEEYKNHFEKDRALSRRFQK-IDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSA  382 (731)
T ss_pred             ----CC-CeEEEEecCHHHHHHHhhhhHHHHHhCce-EEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhh
Confidence                33 46677777753     3589999999974 99999999999999998776543333322     333455555


Q ss_pred             CCcC
Q 010975          417 GYSG  420 (496)
Q Consensus       417 g~s~  420 (496)
                      .|.+
T Consensus       383 ryi~  386 (731)
T TIGR02639       383 RYIN  386 (731)
T ss_pred             cccc
Confidence            5543

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=9.8e-20  Score=194.47  Aligned_cols=252  Identities=21%  Similarity=0.246  Sum_probs=192.7

Q ss_pred             chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeecccccccccC
Q 010975          216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSKWRG  291 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~s~l~~~~~G  291 (496)
                      .|++-...+|+...+....|          +..+.++||+||+|+|||.|++++++++    -.++..++|+.+.+....
T Consensus       408 ~d~i~~~s~kke~~n~~~sp----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e  477 (952)
T KOG0735|consen  408 HDFIQVPSYKKENANQELSP----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE  477 (952)
T ss_pred             Cceeecchhhhhhhhhhccc----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence            35555666666655544333          2334689999999999999999999988    466789999999887777


Q ss_pred             ChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc-hhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHH
Q 010975          292 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAA  370 (496)
Q Consensus       292 ~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~a  370 (496)
                      ...+.+..+|..+.+++|+||++|++|.+++......+ ......++...+.+.+..+..++..+.||++.+....+++.
T Consensus       478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~  557 (952)
T KOG0735|consen  478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPL  557 (952)
T ss_pred             HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChh
Confidence            78888999999999999999999999999984332222 23334444444445555556677778999999999999998


Q ss_pred             HHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcccc
Q 010975          371 MLR--RLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE  447 (496)
Q Consensus       371 L~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~  447 (496)
                      |.+  +|+.++.++.|+..+|.+|++..+.+.... ...+++-++..|+||...|+..++.+|...+..+.+.       
T Consensus       558 L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris-------  630 (952)
T KOG0735|consen  558 LVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS-------  630 (952)
T ss_pred             hcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc-------
Confidence            887  899999999999999999999999876632 3345566999999999999999999999888744332       


Q ss_pred             CCCCCCCCCCCCCCchhHHHHhhcCCCCccchhhh----hhhhccccc
Q 010975          448 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHR----YEKFNADYG  491 (496)
Q Consensus       448 i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~~~~----~~~~~~~~g  491 (496)
                        ...     .-+|.++|.++|+.+.|.+.+.++.    --.|.+..|
T Consensus       631 --~~~-----klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg  671 (952)
T KOG0735|consen  631 --NGP-----KLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGG  671 (952)
T ss_pred             --cCc-----ccchHHHHHHHHHhcChHHhhhccccccCCCCceeccc
Confidence              111     1389999999999999998875422    235555554

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.78  E-value=5.3e-20  Score=176.22  Aligned_cols=183  Identities=19%  Similarity=0.207  Sum_probs=115.7

Q ss_pred             hhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975          207 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV  286 (496)
Q Consensus       207 ~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~  286 (496)
                      ....++.+|+|++|+++++..+.-++.......       .+..|+|||||||+||||||+.||++++.++..+++..+.
T Consensus        15 ~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~-------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~   87 (233)
T PF05496_consen   15 AERLRPKSLDEFIGQEHLKGNLKILIRAAKKRG-------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE   87 (233)
T ss_dssp             HHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT-------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred             HHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcC-------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence            344567789999999999999887765543322       1235899999999999999999999999999988875442


Q ss_pred             ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc--------c-------c
Q 010975          287 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q-------S  351 (496)
Q Consensus       287 ~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~-------~  351 (496)
                      .      ...+..++....  ...||||||||++...             +++.|+..|++..        .       .
T Consensus        88 k------~~dl~~il~~l~--~~~ILFIDEIHRlnk~-------------~qe~LlpamEd~~idiiiG~g~~ar~~~~~  146 (233)
T PF05496_consen   88 K------AGDLAAILTNLK--EGDILFIDEIHRLNKA-------------QQEILLPAMEDGKIDIIIGKGPNARSIRIN  146 (233)
T ss_dssp             S------CHHHHHHHHT----TT-EEEECTCCC--HH-------------HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE
T ss_pred             h------HHHHHHHHHhcC--CCcEEEEechhhccHH-------------HHHHHHHHhccCeEEEEeccccccceeecc
Confidence            1      233444444433  2469999999998644             3344555554321        1       1


Q ss_pred             CcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCC-CCcceeeecccC
Q 010975          352 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG  417 (496)
Q Consensus       352 ~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~-~~l~~la~~t~g  417 (496)
                      ..+.-+|++|++...++++|++||..+..+..++.++...|++.........-+ ....++|+++.|
T Consensus       147 l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG  213 (233)
T PF05496_consen  147 LPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG  213 (233)
T ss_dssp             ----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT
T ss_pred             CCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC
Confidence            134667888888899999999999988899999999999999987765554422 223446666665

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.76  E-value=2.3e-18  Score=192.88  Aligned_cols=213  Identities=23%  Similarity=0.287  Sum_probs=157.6

Q ss_pred             HHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----
Q 010975          198 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----  273 (496)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----  273 (496)
                      ..++..+++.+.....+++.++|.++..+++.+++....            .+++||+||||||||++|+++|...    
T Consensus       168 ~l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~------------~~n~LLvGppGvGKT~lae~la~~i~~~~  235 (758)
T PRK11034        168 RMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRR------------KNNPLLVGESGVGKTAIAEGLAWRIVQGD  235 (758)
T ss_pred             HHHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhccC------------CCCeEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            455666778777788889999999999999999876531            2678999999999999999999875    


Q ss_pred             ------cceeeeeeccccc--ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhc
Q 010975          274 ------KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM  345 (496)
Q Consensus       274 ------~~~~i~v~~s~l~--~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~l  345 (496)
                            +..++.++.+.+.  .+|.|+.+.+++.++..+....++||||||||.+.+.........+..+.    |...+
T Consensus       236 vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nl----Lkp~L  311 (758)
T PRK11034        236 VPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANL----IKPLL  311 (758)
T ss_pred             CCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHH----HHHHH
Confidence                  5667777766665  36789999999999999888788999999999998765432222222221    21122


Q ss_pred             cCccccCcEEEEEeccCCcc-----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceee-----ecc
Q 010975          346 DGLTQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLV-----ERT  415 (496)
Q Consensus       346 d~~~~~~~~viVIatTn~p~-----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la-----~~t  415 (496)
                          .++ .+.+|++|+.++     ..|++|.|||+ .|.++.|+.+++..|++.+...+...+++.+.+.|     ..+
T Consensus       312 ----~~g-~i~vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls  385 (758)
T PRK11034        312 ----SSG-KIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELA  385 (758)
T ss_pred             ----hCC-CeEEEecCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHh
Confidence                233 467888888764     57999999997 49999999999999999988877777777665432     222


Q ss_pred             cC-----CcCCchhhcchhhhc
Q 010975          416 EG-----YSGSDIRLVSKEAAM  432 (496)
Q Consensus       416 ~g-----~s~~dI~~l~~~A~~  432 (496)
                      ..     +.|+..-.++.+|+.
T Consensus       386 ~ryi~~r~lPdKaidlldea~a  407 (758)
T PRK11034        386 VKYINDRHLPDKAIDVIDEAGA  407 (758)
T ss_pred             hccccCccChHHHHHHHHHHHH
Confidence            33     334445556666653

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=99.73  E-value=4.3e-18  Score=166.30  Aligned_cols=182  Identities=19%  Similarity=0.185  Sum_probs=136.1

Q ss_pred             CCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc
Q 010975          209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK  288 (496)
Q Consensus       209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~  288 (496)
                      .-++..|+|.+|++++|+.|.-++...+.+.+.       .-|+||+||||.||||||+.+|+++|..+-..++..+.  
T Consensus        19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~-------lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le--   89 (332)
T COG2255          19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEA-------LDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE--   89 (332)
T ss_pred             ccCcccHHHhcChHHHHHHHHHHHHHHHhcCCC-------cCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc--
Confidence            345677999999999999999998777665543       35899999999999999999999999998888776652  


Q ss_pred             ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccc---------------cCc
Q 010975          289 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ---------------SDE  353 (496)
Q Consensus       289 ~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~---------------~~~  353 (496)
                          -...+..++.....  ..||||||||.+.+.             +.+-|+..|+++.-               .-.
T Consensus        90 ----K~gDlaaiLt~Le~--~DVLFIDEIHrl~~~-------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp  150 (332)
T COG2255          90 ----KPGDLAAILTNLEE--GDVLFIDEIHRLSPA-------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP  150 (332)
T ss_pred             ----ChhhHHHHHhcCCc--CCeEEEehhhhcChh-------------HHHHhhhhhhheeEEEEEccCCccceEeccCC
Confidence                23444555554443  369999999998644             22334444543211               123


Q ss_pred             EEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCC-CcceeeecccCC
Q 010975          354 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGY  418 (496)
Q Consensus       354 ~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~-~l~~la~~t~g~  418 (496)
                      +.-+|++|.+...+..+|++||.....+..++.++..+|+.+........-+. ...++|+++.|.
T Consensus       151 pFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGT  216 (332)
T COG2255         151 PFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGT  216 (332)
T ss_pred             CeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCC
Confidence            45678888889999999999999999999999999999999887665554322 245577777764

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.73  E-value=1.3e-17  Score=189.82  Aligned_cols=199  Identities=21%  Similarity=0.329  Sum_probs=146.4

Q ss_pred             HHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-----
Q 010975          199 AESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----  273 (496)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-----  273 (496)
                      .++..+++.....+.++++++|+++..+++.+.+....            .++++|+||||||||++|+.+|+.+     
T Consensus       170 l~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~------------~~n~lLvG~pGvGKTal~~~La~~i~~~~v  237 (852)
T TIGR03345       170 LDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRR------------QNNPILTGEAGVGKTAVVEGLALRIAAGDV  237 (852)
T ss_pred             HHHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCC------------cCceeEECCCCCCHHHHHHHHHHHHhhCCC
Confidence            44556777777788899999999999999888775432            2689999999999999999999986     


Q ss_pred             -----cceeeeeecccccc--cccCChHHHHHHHHHHhhh-cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhc
Q 010975          274 -----KTTFFNISASSVVS--KWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM  345 (496)
Q Consensus       274 -----~~~~i~v~~s~l~~--~~~G~~e~~l~~lf~~a~~-~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~l  345 (496)
                           +.+++.++.+.+.+  .+.|+++..++.+++.+.. ..+.||||||+|.+.+.+.... ..+..+    .|...+
T Consensus       238 ~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~-~~d~~n----~Lkp~l  312 (852)
T TIGR03345       238 PPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG-QGDAAN----LLKPAL  312 (852)
T ss_pred             CccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc-cccHHH----HhhHHh
Confidence                 35678888887763  6889999999999998864 3568999999999987643211 111211    122222


Q ss_pred             cCccccCcEEEEEeccCCc-----ccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCC-----cceeeecc
Q 010975          346 DGLTQSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-----YDLLVERT  415 (496)
Q Consensus       346 d~~~~~~~~viVIatTn~p-----~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~-----l~~la~~t  415 (496)
                          .++. +.+|++|+..     ..+|++|.|||. .|.++.|+.+++..|++.+...+...+++.     +..++..+
T Consensus       313 ----~~G~-l~~IgaTT~~e~~~~~~~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls  386 (852)
T TIGR03345       313 ----ARGE-LRTIAATTWAEYKKYFEKDPALTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELS  386 (852)
T ss_pred             ----hCCC-eEEEEecCHHHHhhhhhccHHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHc
Confidence                2444 5566666653     358999999996 599999999999999887776554443333     34456666


Q ss_pred             cCCcC
Q 010975          416 EGYSG  420 (496)
Q Consensus       416 ~g~s~  420 (496)
                      .+|.+
T Consensus       387 ~ryi~  391 (852)
T TIGR03345       387 HRYIP  391 (852)
T ss_pred             ccccc
Confidence            66654

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.72  E-value=2e-17  Score=188.70  Aligned_cols=187  Identities=21%  Similarity=0.332  Sum_probs=144.1

Q ss_pred             HHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----
Q 010975          198 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----  273 (496)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----  273 (496)
                      ..++..+++.+...+.++++++|.++..+++.+++....            .++++|+||||||||++|+++|..+    
T Consensus       160 ~l~~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~------------~~n~lL~G~pGvGKT~l~~~la~~i~~~~  227 (857)
T PRK10865        160 ALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRT------------KNNPVLIGEPGVGKTAIVEGLAQRIINGE  227 (857)
T ss_pred             HHHHHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCC------------cCceEEECCCCCCHHHHHHHHHHHhhcCC
Confidence            445566777788888899999999999999999886532            2589999999999999999999988    


Q ss_pred             ------cceeeeeeccccc--ccccCChHHHHHHHHHHhhh-cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhh
Q 010975          274 ------KTTFFNISASSVV--SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ  344 (496)
Q Consensus       274 ------~~~~i~v~~s~l~--~~~~G~~e~~l~~lf~~a~~-~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~  344 (496)
                            +.+++.++.+.+.  .+|.|+.+..++.+++.+.. ..++||||||+|.+.+..... +..+..+.+..    .
T Consensus       228 vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-~~~d~~~~lkp----~  302 (857)
T PRK10865        228 VPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-GAMDAGNMLKP----A  302 (857)
T ss_pred             CchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-cchhHHHHhcc----h
Confidence                  7889999888876  46889999999999988654 467899999999998764322 22333333222    2


Q ss_pred             ccCccccCcEEEEEeccCCcc-----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCC
Q 010975          345 MDGLTQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP  407 (496)
Q Consensus       345 ld~~~~~~~~viVIatTn~p~-----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~  407 (496)
                      +    .++. +.+|++|+..+     .+|+++.|||+. |.++.|+.+++..|++.+...+...+++.
T Consensus       303 l----~~g~-l~~IgaTt~~e~r~~~~~d~al~rRf~~-i~v~eP~~~~~~~iL~~l~~~~e~~~~v~  364 (857)
T PRK10865        303 L----ARGE-LHCVGATTLDEYRQYIEKDAALERRFQK-VFVAEPSVEDTIAILRGLKERYELHHHVQ  364 (857)
T ss_pred             h----hcCC-CeEEEcCCCHHHHHHhhhcHHHHhhCCE-EEeCCCCHHHHHHHHHHHhhhhccCCCCC
Confidence            2    2444 56677776654     489999999975 88999999999999998877665555443

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.72  E-value=1.5e-17  Score=168.65  Aligned_cols=187  Identities=17%  Similarity=0.163  Sum_probs=125.7

Q ss_pred             ccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCCh
Q 010975          214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS  293 (496)
Q Consensus       214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~  293 (496)
                      +|++++|++++++.|..++......+       ..+.+++|+||||||||++|+++|++++.++..+.+.....      
T Consensus         2 ~~~~~iG~~~~~~~l~~~l~~~~~~~-------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------   68 (305)
T TIGR00635         2 LLAEFIGQEKVKEQLQLFIEAAKMRQ-------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------   68 (305)
T ss_pred             CHHHHcCHHHHHHHHHHHHHHHHhcC-------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence            58999999999999998885433221       23467999999999999999999999988876665443211      


Q ss_pred             HHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc---------------ccCcEEEEE
Q 010975          294 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDELVFVL  358 (496)
Q Consensus       294 e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~---------------~~~~~viVI  358 (496)
                      ...+...+...  ..+.+|||||+|.+.....             +.|+..+++..               .....+.+|
T Consensus        69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~~-------------e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li  133 (305)
T TIGR00635        69 PGDLAAILTNL--EEGDVLFIDEIHRLSPAVE-------------ELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLV  133 (305)
T ss_pred             chhHHHHHHhc--ccCCEEEEehHhhhCHHHH-------------HHhhHHHhhhheeeeeccCccccceeecCCCeEEE
Confidence            12222333322  2357999999999864321             11222222110               111236688


Q ss_pred             eccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCC-CCCcceeeecccCCcCCchhhcchh
Q 010975          359 AATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKE  429 (496)
Q Consensus       359 atTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~-~~~l~~la~~t~g~s~~dI~~l~~~  429 (496)
                      ++||.+..+++++++||...+.++.|+.++..++++..+....... +..++.+++.+.|+. +.+..++..
T Consensus       134 ~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~  204 (305)
T TIGR00635       134 GATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRR  204 (305)
T ss_pred             EecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHH
Confidence            8889999999999999988889999999999999998876543332 222455677666644 344444443

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.71  E-value=2.4e-17  Score=169.28  Aligned_cols=221  Identities=18%  Similarity=0.135  Sum_probs=144.9

Q ss_pred             hCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc
Q 010975          208 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS  287 (496)
Q Consensus       208 ~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~  287 (496)
                      .+..+.+|++++|+++.++.+...+......       ..++.+++|+||||||||++|+++|++++..+..++...+. 
T Consensus        17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~-   88 (328)
T PRK00080         17 RSLRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE-   88 (328)
T ss_pred             hhcCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc-
Confidence            3455678999999999999999887543221       12456899999999999999999999999888776654331 


Q ss_pred             cccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc----------c-----ccC
Q 010975          288 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL----------T-----QSD  352 (496)
Q Consensus       288 ~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~----------~-----~~~  352 (496)
                           ....+..++....  .++||||||||.+.....             +.+...+++.          .     ...
T Consensus        89 -----~~~~l~~~l~~l~--~~~vl~IDEi~~l~~~~~-------------e~l~~~~e~~~~~~~l~~~~~~~~~~~~l  148 (328)
T PRK00080         89 -----KPGDLAAILTNLE--EGDVLFIDEIHRLSPVVE-------------EILYPAMEDFRLDIMIGKGPAARSIRLDL  148 (328)
T ss_pred             -----ChHHHHHHHHhcc--cCCEEEEecHhhcchHHH-------------HHHHHHHHhcceeeeeccCccccceeecC
Confidence                 1233444444332  357999999999854311             1111222111          0     011


Q ss_pred             cEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCC-CCcceeeecccCCcCCchhhcchhhh
Q 010975          353 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAA  431 (496)
Q Consensus       353 ~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~-~~l~~la~~t~g~s~~dI~~l~~~A~  431 (496)
                      ..+.+|++|+.+..+++++++||...+.++.|+.+++.+|++..+.......+ ..++.+++.+.|.. +.+..+++.+.
T Consensus       149 ~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~  227 (328)
T PRK00080        149 PPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVR  227 (328)
T ss_pred             CCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHH
Confidence            23667888999999999999999888999999999999999988776544322 22455666666643 33333433322


Q ss_pred             ccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCC
Q 010975          432 MQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS  475 (496)
Q Consensus       432 ~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps  475 (496)
                      ..+..+                  ....|+.+++..++..+...
T Consensus       228 ~~a~~~------------------~~~~I~~~~v~~~l~~~~~~  253 (328)
T PRK00080        228 DFAQVK------------------GDGVITKEIADKALDMLGVD  253 (328)
T ss_pred             HHHHHc------------------CCCCCCHHHHHHHHHHhCCC
Confidence            111110                  01237888888888776544

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.69  E-value=9.3e-17  Score=170.18  Aligned_cols=209  Identities=15%  Similarity=0.192  Sum_probs=141.7

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------  276 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~---------  276 (496)
                      +.+++++.+|+|++|++++++.|...+....           .++.+||+||||||||++|+.+|+.++..         
T Consensus         8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~r-----------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg   76 (484)
T PRK14956          8 LSRKYRPQFFRDVIHQDLAIGALQNALKSGK-----------IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCN   76 (484)
T ss_pred             hHHHhCCCCHHHHhChHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccC
Confidence            5667889999999999999999998875422           22458999999999999999999998653         


Q ss_pred             ---------------eeeeecccccccccCChHHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975          277 ---------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRL  337 (496)
Q Consensus       277 ---------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i  337 (496)
                                     ++.+++..-      ..-..++.+.+.+.    .....|++|||+|.|..             ..
T Consensus        77 ~C~sC~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-------------~A  137 (484)
T PRK14956         77 ECTSCLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-------------QS  137 (484)
T ss_pred             CCcHHHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-------------HH
Confidence                           223322110      11233454444433    23346999999999842             24


Q ss_pred             hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccC
Q 010975          338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG  417 (496)
Q Consensus       338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g  417 (496)
                      .++|+..++   .....+++|.+|+.++.+.+++++||.. +.|..++.++....++..+......              
T Consensus       138 ~NALLKtLE---EPp~~viFILaTte~~kI~~TI~SRCq~-~~f~~ls~~~i~~~L~~i~~~Egi~--------------  199 (484)
T PRK14956        138 FNALLKTLE---EPPAHIVFILATTEFHKIPETILSRCQD-FIFKKVPLSVLQDYSEKLCKIENVQ--------------  199 (484)
T ss_pred             HHHHHHHhh---cCCCceEEEeecCChhhccHHHHhhhhe-eeecCCCHHHHHHHHHHHHHHcCCC--------------
Confidence            577888886   3445677778888899999999999965 8999999888888888877654322              


Q ss_pred             CcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhh
Q 010975          418 YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK  470 (496)
Q Consensus       418 ~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~  470 (496)
                      +.... -.++.+++.+.+|++++.++......  .     ..||.+++.+.+.
T Consensus       200 ~e~eA-L~~Ia~~S~Gd~RdAL~lLeq~i~~~--~-----~~it~~~V~~~lg  244 (484)
T PRK14956        200 YDQEG-LFWIAKKGDGSVRDMLSFMEQAIVFT--D-----SKLTGVKIRKMIG  244 (484)
T ss_pred             CCHHH-HHHHHHHcCChHHHHHHHHHHHHHhC--C-----CCcCHHHHHHHhC
Confidence            12222 23344555566777777766433211  0     1267777766663

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.69  E-value=9e-17  Score=183.85  Aligned_cols=199  Identities=20%  Similarity=0.326  Sum_probs=147.3

Q ss_pred             HHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----
Q 010975          198 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----  273 (496)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----  273 (496)
                      ..++..+++.....+.++++++|.++..+++.+++....            .++++|+||||||||++++++|..+    
T Consensus       155 ~l~~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~------------~~n~lL~G~pGvGKT~l~~~la~~i~~~~  222 (852)
T TIGR03346       155 ALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRT------------KNNPVLIGEPGVGKTAIVEGLAQRIVNGD  222 (852)
T ss_pred             HHHHHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCC------------CCceEEEcCCCCCHHHHHHHHHHHHhccC
Confidence            344556777777788889999999999999998875532            2679999999999999999999986    


Q ss_pred             ------cceeeeeeccccc--ccccCChHHHHHHHHHHhhhc-CCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhh
Q 010975          274 ------KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ  344 (496)
Q Consensus       274 ------~~~~i~v~~s~l~--~~~~G~~e~~l~~lf~~a~~~-~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~  344 (496)
                            +.+++.++.+.+.  .+|.|+.+..++.+++.+... .+.||||||+|.+.+..... +..+..    +.|...
T Consensus       223 ~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~-~~~d~~----~~Lk~~  297 (852)
T TIGR03346       223 VPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE-GAMDAG----NMLKPA  297 (852)
T ss_pred             CchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc-chhHHH----HHhchh
Confidence                  6788888888775  468899999999999988653 57899999999998643221 112222    222222


Q ss_pred             ccCccccCcEEEEEeccCCcc-----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCc-----ceeeec
Q 010975          345 MDGLTQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPY-----DLLVER  414 (496)
Q Consensus       345 ld~~~~~~~~viVIatTn~p~-----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l-----~~la~~  414 (496)
                      +    .++. +.+|++|+..+     .+|+++.|||.. +.++.|+.+++..|++.+...+...+++.+     ...+..
T Consensus       298 l----~~g~-i~~IgaTt~~e~r~~~~~d~al~rRf~~-i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~l  371 (852)
T TIGR03346       298 L----ARGE-LHCIGATTLDEYRKYIEKDAALERRFQP-VFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATL  371 (852)
T ss_pred             h----hcCc-eEEEEeCcHHHHHHHhhcCHHHHhcCCE-EEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHh
Confidence            2    2344 56666666552     479999999976 899999999999999998777666655433     234444


Q ss_pred             ccCCc
Q 010975          415 TEGYS  419 (496)
Q Consensus       415 t~g~s  419 (496)
                      +.+|.
T Consensus       372 s~~yi  376 (852)
T TIGR03346       372 SHRYI  376 (852)
T ss_pred             ccccc
Confidence            55544

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=99.69  E-value=6.6e-17  Score=175.91  Aligned_cols=224  Identities=21%  Similarity=0.260  Sum_probs=139.5

Q ss_pred             HhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh--------
Q 010975          202 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC--------  273 (496)
Q Consensus       202 ~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l--------  273 (496)
                      +...+.+++++.+|++++|++..++.+...+..+            .+.++||+||||||||++|+++++.+        
T Consensus        51 ~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~------------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~  118 (531)
T TIGR02902        51 LTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGP------------NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPF  118 (531)
T ss_pred             hcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCC------------CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCc
Confidence            4556778889999999999999999998654221            23689999999999999999998743        


Q ss_pred             --cceeeeeeccccc-------ccccCChHH----------------HHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc
Q 010975          274 --KTTFFNISASSVV-------SKWRGDSEK----------------LIKVLFELARHHAPSTIFLDEIDAIISQRGEAR  328 (496)
Q Consensus       274 --~~~~i~v~~s~l~-------~~~~G~~e~----------------~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~  328 (496)
                        +.+|+.++|....       ....|....                .....+..+   ..++|||||||.|....+   
T Consensus       119 ~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~~~~q---  192 (531)
T TIGR02902       119 KEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELHPVQM---  192 (531)
T ss_pred             CCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCCHHHH---
Confidence              3678999986421       111110000                000122222   237999999999865422   


Q ss_pred             chhHHhhhhhhhhhhhccCc--------------------------cccCcEEEEEeccCCcccccHHHHHHhhhhhccc
Q 010975          329 SEHEASRRLKTELLIQMDGL--------------------------TQSDELVFVLAATNLPWELDAAMLRRLEKRILVP  382 (496)
Q Consensus       329 ~~~~~~~~i~~~Ll~~ld~~--------------------------~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~  382 (496)
                                +.|+..++.-                          ....+..+|++||+.|+.+++++++|+.. +.++
T Consensus       193 ----------~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~-I~f~  261 (531)
T TIGR02902       193 ----------NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVE-IFFR  261 (531)
T ss_pred             ----------HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhhe-eeCC
Confidence                      2233322210                          01123355667788899999999999965 8899


Q ss_pred             CCCHHHHHHHHHhhCCCCCCCCC-CCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCC
Q 010975          383 LPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIR  461 (496)
Q Consensus       383 ~P~~eeR~~Il~~~l~~~~~~~~-~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It  461 (496)
                      .++.+++.+|++..+++.....+ ..++.++..+.  +++++.++++.|+..+..               +.   ...||
T Consensus       262 pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~---------------~~---~~~It  321 (531)
T TIGR02902       262 PLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALG---------------EG---RKRIL  321 (531)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhh---------------CC---CcEEc
Confidence            99999999999998876543211 11222222211  233444444433322211               10   13499


Q ss_pred             chhHHHHhhcCCC
Q 010975          462 PEDVEIALKNTRP  474 (496)
Q Consensus       462 ~eDf~~Al~~~~P  474 (496)
                      .+|++.++..-+-
T Consensus       322 ~~dI~~vl~~~~~  334 (531)
T TIGR02902       322 AEDIEWVAENGNY  334 (531)
T ss_pred             HHHHHHHhCCccc
Confidence            9999999985443

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.68  E-value=4.7e-17  Score=185.57  Aligned_cols=200  Identities=20%  Similarity=0.308  Sum_probs=146.7

Q ss_pred             HHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----
Q 010975          198 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----  273 (496)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----  273 (496)
                      ..++..+++.....+.++++++|.++.++++.+++...            ..++++|+||||||||++|+.+|..+    
T Consensus       161 ~l~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~------------~~~n~lL~G~pGvGKTal~~~la~~i~~~~  228 (821)
T CHL00095        161 TLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRR------------TKNNPILIGEPGVGKTAIAEGLAQRIVNRD  228 (821)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHccc------------ccCCeEEECCCCCCHHHHHHHHHHHHHhCC
Confidence            34455677777777788999999999999999988653            23689999999999999999999987    


Q ss_pred             ------cceeeeeeccccc--ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhc
Q 010975          274 ------KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM  345 (496)
Q Consensus       274 ------~~~~i~v~~s~l~--~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~l  345 (496)
                            +.+++.++++.+.  .+|.|+++.+++.+++.+....+.||||||+|.+.+..... +.....+.+.    ..+
T Consensus       229 vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~-g~~~~a~lLk----p~l  303 (821)
T CHL00095        229 VPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE-GAIDAANILK----PAL  303 (821)
T ss_pred             CChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC-CcccHHHHhH----HHH
Confidence                  4789999998876  47899999999999999988778999999999998764322 1122222222    222


Q ss_pred             cCccccCcEEEEEeccCCcc-----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCC-----CCCcceeeecc
Q 010975          346 DGLTQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-----SLPYDLLVERT  415 (496)
Q Consensus       346 d~~~~~~~~viVIatTn~p~-----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~-----~~~l~~la~~t  415 (496)
                          .++. +.+|++|+..+     ..|+++.+||.. +.++.|+.++...|++.....+...+     +..+..++..+
T Consensus       304 ----~rg~-l~~IgaTt~~ey~~~ie~D~aL~rRf~~-I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls  377 (821)
T CHL00095        304 ----ARGE-LQCIGATTLDEYRKHIEKDPALERRFQP-VYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLS  377 (821)
T ss_pred             ----hCCC-cEEEEeCCHHHHHHHHhcCHHHHhcceE-EecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence                2344 55666666552     478999999976 89999999999999887653322111     12234455666


Q ss_pred             cCCcC
Q 010975          416 EGYSG  420 (496)
Q Consensus       416 ~g~s~  420 (496)
                      .+|.+
T Consensus       378 ~~yi~  382 (821)
T CHL00095        378 DQYIA  382 (821)
T ss_pred             hccCc
Confidence            66654

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.68  E-value=9.2e-17  Score=171.91  Aligned_cols=213  Identities=19%  Similarity=0.218  Sum_probs=139.1

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc---------
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------  275 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~---------  275 (496)
                      .+.+++++.+|+|++|++++++.|...+....           .++++||+|||||||||+|+++|+.++.         
T Consensus         3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~-----------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc   71 (472)
T PRK14962          3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNS-----------ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPC   71 (472)
T ss_pred             hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCC
Confidence            45667889999999999999999988775432           2356899999999999999999998864         


Q ss_pred             ---------------eeeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhh
Q 010975          276 ---------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRR  336 (496)
Q Consensus       276 ---------------~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~  336 (496)
                                     .++.++++.-      ..-..++.+.+.+..    ....||+|||+|.+...             
T Consensus        72 ~~c~~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~-------------  132 (472)
T PRK14962         72 NECRACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE-------------  132 (472)
T ss_pred             cccHHHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH-------------
Confidence                           2444443211      112344555544432    23469999999998532             


Q ss_pred             hhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeeccc
Q 010975          337 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTE  416 (496)
Q Consensus       337 i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~  416 (496)
                      .++.|+..++.   .+..+++|++|+.+..+++++++|+. .+.+..++.++...+++..+......             
T Consensus       133 a~~~LLk~LE~---p~~~vv~Ilattn~~kl~~~L~SR~~-vv~f~~l~~~el~~~L~~i~~~egi~-------------  195 (472)
T PRK14962        133 AFNALLKTLEE---PPSHVVFVLATTNLEKVPPTIISRCQ-VIEFRNISDELIIKRLQEVAEAEGIE-------------  195 (472)
T ss_pred             HHHHHHHHHHh---CCCcEEEEEEeCChHhhhHHHhcCcE-EEEECCccHHHHHHHHHHHHHHcCCC-------------
Confidence            23557777763   33345566666678889999999996 59999999999999998887654332             


Q ss_pred             CCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCC
Q 010975          417 GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR  473 (496)
Q Consensus       417 g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~  473 (496)
                       ++...+..+++ .+.+.+|++++.++...... .      ..||.+|+.+++....
T Consensus       196 -i~~eal~~Ia~-~s~GdlR~aln~Le~l~~~~-~------~~It~e~V~~~l~~~~  243 (472)
T PRK14962        196 -IDREALSFIAK-RASGGLRDALTMLEQVWKFS-E------GKITLETVHEALGLIP  243 (472)
T ss_pred             -CCHHHHHHHHH-HhCCCHHHHHHHHHHHHHhc-C------CCCCHHHHHHHHcCCC
Confidence             11122222222 22234444555444322111 0      1278888888886654

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.67  E-value=1.6e-16  Score=172.28  Aligned_cols=162  Identities=18%  Similarity=0.241  Sum_probs=120.5

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc----------
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----------  275 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~----------  275 (496)
                      +.+++++.+|+||+|++++++.|...+....           .++.+||+||+|+|||++|+.+|+.+++          
T Consensus         6 LarKYRPqtFddVIGQe~vv~~L~~al~~gR-----------LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~   74 (700)
T PRK12323          6 LARKWRPRDFTTLVGQEHVVRALTHALEQQR-----------LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT   74 (700)
T ss_pred             HHHHhCCCcHHHHcCcHHHHHHHHHHHHhCC-----------CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC
Confidence            4567889999999999999999999885432           2356899999999999999999999865          


Q ss_pred             -------------------eeeeeecccccccccCChHHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCcchhH
Q 010975          276 -------------------TFFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHE  332 (496)
Q Consensus       276 -------------------~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~~~~~  332 (496)
                                         .+++++..+      ...-..++.+.+.+.    ..+..|++|||+|.|..          
T Consensus        75 ~~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~----------  138 (700)
T PRK12323         75 AQPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN----------  138 (700)
T ss_pred             CCCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH----------
Confidence                               122222221      012234555555443    23346999999999842          


Q ss_pred             HhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975          333 ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       333 ~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                         ...+.||+.|+   .....+.+|.+||+++.|.+.+++||.. +.|..++.++..+.++.++....
T Consensus       139 ---~AaNALLKTLE---EPP~~v~FILaTtep~kLlpTIrSRCq~-f~f~~ls~eei~~~L~~Il~~Eg  200 (700)
T PRK12323        139 ---HAFNAMLKTLE---EPPEHVKFILATTDPQKIPVTVLSRCLQ-FNLKQMPPGHIVSHLDAILGEEG  200 (700)
T ss_pred             ---HHHHHHHHhhc---cCCCCceEEEEeCChHhhhhHHHHHHHh-cccCCCChHHHHHHHHHHHHHcC
Confidence               23467888887   3445577888889999999999999955 99999999999998888776543

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=99.67  E-value=1.8e-16  Score=174.00  Aligned_cols=178  Identities=19%  Similarity=0.217  Sum_probs=126.0

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------  276 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~---------  276 (496)
                      +.+++++.+|++|+|++++++.|...+...           ..++.+||+||+|||||++++.+|+.+++.         
T Consensus         6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~~g-----------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG   74 (830)
T PRK07003          6 LARKWRPKDFASLVGQEHVVRALTHALDGG-----------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCG   74 (830)
T ss_pred             HHHHhCCCcHHHHcCcHHHHHHHHHHHhcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCc
Confidence            456788999999999999999999887532           123567999999999999999999988642         


Q ss_pred             ---------------eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975          277 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL  337 (496)
Q Consensus       277 ---------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i  337 (496)
                                     +++++..+      ...-..++.+++.+..    ....|+||||+|.|..             ..
T Consensus        75 ~C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-------------~A  135 (830)
T PRK07003         75 VCRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-------------HA  135 (830)
T ss_pred             ccHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-------------HH
Confidence                           23333221      1122345555555432    2346999999999842             23


Q ss_pred             hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCC-CCCcceeeeccc
Q 010975          338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTE  416 (496)
Q Consensus       338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~-~~~l~~la~~t~  416 (496)
                      .+.||+.|+.   ....+.||.+||+++.|.+.+++||.. +.|..++.++....++.++....... +..+..+++.++
T Consensus       136 ~NALLKtLEE---PP~~v~FILaTtd~~KIp~TIrSRCq~-f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~  211 (830)
T PRK07003        136 FNAMLKTLEE---PPPHVKFILATTDPQKIPVTVLSRCLQ-FNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQ  211 (830)
T ss_pred             HHHHHHHHHh---cCCCeEEEEEECChhhccchhhhheEE-EecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence            4668887763   344577888889999999999999955 99999999999999998886654432 122333444444


Q ss_pred             C
Q 010975          417 G  417 (496)
Q Consensus       417 g  417 (496)
                      |
T Consensus       212 G  212 (830)
T PRK07003        212 G  212 (830)
T ss_pred             C
Confidence            4

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=2.1e-16  Score=174.44  Aligned_cols=192  Identities=25%  Similarity=0.368  Sum_probs=155.6

Q ss_pred             HHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----
Q 010975          198 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----  273 (496)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----  273 (496)
                      ..++..+++.......+++.++|.++.++++.+++....+            ++.+|.|+||+|||.++..+|...    
T Consensus       152 ~L~~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~K------------NNPvLiGEpGVGKTAIvEGLA~rIv~g~  219 (786)
T COG0542         152 ALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTK------------NNPVLVGEPGVGKTAIVEGLAQRIVNGD  219 (786)
T ss_pred             hHHHHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCC------------CCCeEecCCCCCHHHHHHHHHHHHhcCC
Confidence            4455667888888889999999999999999999977543            689999999999999999999987    


Q ss_pred             ------cceeeeeecccccc--cccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhc
Q 010975          274 ------KTTFFNISASSVVS--KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM  345 (496)
Q Consensus       274 ------~~~~i~v~~s~l~~--~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~l  345 (496)
                            +..++.++.+.+..  +|.|+++.+++.++++.....+.||||||||.+.+.....+...++++-++..|    
T Consensus       220 VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL----  295 (786)
T COG0542         220 VPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL----  295 (786)
T ss_pred             CCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH----
Confidence                  67889999988875  799999999999999999888899999999999877433221244455554444    


Q ss_pred             cCccccCcEEEEEeccCCcc----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcce
Q 010975          346 DGLTQSDELVFVLAATNLPW----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDL  410 (496)
Q Consensus       346 d~~~~~~~~viVIatTn~p~----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~  410 (496)
                          .++.--+|.|||-..+    +-|+||-|||+. |.+..|+.++-..|++.+...+..++++.+.+
T Consensus       296 ----ARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~-V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D  359 (786)
T COG0542         296 ----ARGELRCIGATTLDEYRKYIEKDAALERRFQK-VLVDEPSVEDTIAILRGLKERYEAHHGVRITD  359 (786)
T ss_pred             ----hcCCeEEEEeccHHHHHHHhhhchHHHhcCce-eeCCCCCHHHHHHHHHHHHHHHHHccCceecH
Confidence                3566555666664432    478999999987 99999999999999999988888777765443

>PRK13342 recombination factor protein RarA; Reviewed

Probab=99.66  E-value=3.7e-16  Score=165.47  Aligned_cols=211  Identities=23%  Similarity=0.316  Sum_probs=139.7

Q ss_pred             hhhCCCCCccchhhcchHHHHH---HhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975          206 IIRGSPDVKWESIKGLENAKRL---LKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA  282 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~---L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~  282 (496)
                      +.+++++.+++|++|++++...   |.+.+...            ...+++|+||||||||++|+++|+.++.+++.+++
T Consensus         2 la~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~------------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a   69 (413)
T PRK13342          2 LAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAG------------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSA   69 (413)
T ss_pred             hhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcC------------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence            3456678889999999999766   77776432            12589999999999999999999999999999987


Q ss_pred             ccccccccCChHHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEE
Q 010975          283 SSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL  358 (496)
Q Consensus       283 s~l~~~~~G~~e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVI  358 (496)
                      ...       ....++.+++.+.    .....||||||+|.+...             ..+.|+..++.    ...+++.
T Consensus        70 ~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-------------~q~~LL~~le~----~~iilI~  125 (413)
T PRK13342         70 VTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-------------QQDALLPHVED----GTITLIG  125 (413)
T ss_pred             ccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-------------HHHHHHHHhhc----CcEEEEE
Confidence            542       1234455555443    224579999999988432             22445655542    3334444


Q ss_pred             eccCCc-ccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHH
Q 010975          359 AATNLP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR  437 (496)
Q Consensus       359 atTn~p-~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR  437 (496)
                      +||..+ ..+++++++|| ..+.++.++.++...+++..+......  .         -.++...+..+++.+ .+.+|+
T Consensus       126 att~n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~--~---------i~i~~~al~~l~~~s-~Gd~R~  192 (413)
T PRK13342        126 ATTENPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERG--L---------VELDDEALDALARLA-NGDARR  192 (413)
T ss_pred             eCCCChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcC--C---------CCCCHHHHHHHHHhC-CCCHHH
Confidence            444444 57999999999 559999999999999999877543111  0         012222233333332 455666


Q ss_pred             HHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCC
Q 010975          438 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR  473 (496)
Q Consensus       438 ~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~  473 (496)
                      +++.++.....        ...|+.+++..++....
T Consensus       193 aln~Le~~~~~--------~~~It~~~v~~~~~~~~  220 (413)
T PRK13342        193 ALNLLELAALG--------VDSITLELLEEALQKRA  220 (413)
T ss_pred             HHHHHHHHHHc--------cCCCCHHHHHHHHhhhh
Confidence            66655543322        12489999998887653

>PLN03025 replication factor C subunit; Provisional

Probab=99.65  E-value=5.5e-16  Score=158.73  Aligned_cols=163  Identities=18%  Similarity=0.182  Sum_probs=116.2

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc-----ceeeee
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNI  280 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~-----~~~i~v  280 (496)
                      |.+++++.+++|++|++++++.|..++...            ...++||+||||||||++|+++|+++.     ..++.+
T Consensus         3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el   70 (319)
T PLN03025          3 WVEKYRPTKLDDIVGNEDAVSRLQVIARDG------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL   70 (319)
T ss_pred             hhhhcCCCCHHHhcCcHHHHHHHHHHHhcC------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeee
Confidence            677889999999999999999998876432            124799999999999999999999973     235666


Q ss_pred             ecccccccccCChHHHHHHHHHHh---h----hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCc
Q 010975          281 SASSVVSKWRGDSEKLIKVLFELA---R----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE  353 (496)
Q Consensus       281 ~~s~l~~~~~G~~e~~l~~lf~~a---~----~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~  353 (496)
                      +.++..+.      ..++..+...   .    ...+.|++|||+|.+...             .++.|+..++..   ..
T Consensus        71 n~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~-------------aq~aL~~~lE~~---~~  128 (319)
T PLN03025         71 NASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG-------------AQQALRRTMEIY---SN  128 (319)
T ss_pred             cccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH-------------HHHHHHHHHhcc---cC
Confidence            66554221      1233322211   1    123469999999998533             124455666532   22


Q ss_pred             EEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC
Q 010975          354 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE  403 (496)
Q Consensus       354 ~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~  403 (496)
                      ...+|.+||.+..+.+++++|+. .+.|+.|+.++....++..+...+..
T Consensus       129 ~t~~il~~n~~~~i~~~L~SRc~-~i~f~~l~~~~l~~~L~~i~~~egi~  177 (319)
T PLN03025        129 TTRFALACNTSSKIIEPIQSRCA-IVRFSRLSDQEILGRLMKVVEAEKVP  177 (319)
T ss_pred             CceEEEEeCCccccchhHHHhhh-cccCCCCCHHHHHHHHHHHHHHcCCC
Confidence            23456678888889999999995 59999999999999999887665443

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.65  E-value=4.6e-16  Score=168.11  Aligned_cols=214  Identities=19%  Similarity=0.207  Sum_probs=140.8

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------  276 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~---------  276 (496)
                      +.+++++.+|+|++|++++++.|...+....           .++.+||+||||||||++|+++|+.+++.         
T Consensus         6 l~~kyRP~~f~divGq~~v~~~L~~~~~~~~-----------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg   74 (509)
T PRK14958          6 LARKWRPRCFQEVIGQAPVVRALSNALDQQY-----------LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCN   74 (509)
T ss_pred             HHHHHCCCCHHHhcCCHHHHHHHHHHHHhCC-----------CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCC
Confidence            5677889999999999999999999885421           23568999999999999999999998643         


Q ss_pred             ---------------eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975          277 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL  337 (496)
Q Consensus       277 ---------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i  337 (496)
                                     ++++++++-      ..-..++.+.+.+..    .+..|++|||+|.|...             .
T Consensus        75 ~C~~C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-------------a  135 (509)
T PRK14958         75 DCENCREIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-------------S  135 (509)
T ss_pred             CCHHHHHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-------------H
Confidence                           344443211      122345555554432    23469999999998432             3


Q ss_pred             hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccC
Q 010975          338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG  417 (496)
Q Consensus       338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g  417 (496)
                      .+.|+..++.   .+..+.+|.+|+++..+.+.+++|+.. +.+..++.++....++..+.......             
T Consensus       136 ~naLLk~LEe---pp~~~~fIlattd~~kl~~tI~SRc~~-~~f~~l~~~~i~~~l~~il~~egi~~-------------  198 (509)
T PRK14958        136 FNALLKTLEE---PPSHVKFILATTDHHKLPVTVLSRCLQ-FHLAQLPPLQIAAHCQHLLKEENVEF-------------  198 (509)
T ss_pred             HHHHHHHHhc---cCCCeEEEEEECChHhchHHHHHHhhh-hhcCCCCHHHHHHHHHHHHHHcCCCC-------------
Confidence            4678888873   334466667778888899999999955 89999998888888887776554331             


Q ss_pred             CcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCC
Q 010975          418 YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS  475 (496)
Q Consensus       418 ~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps  475 (496)
                       ....+..++ +++.+.+|++++.++.....  .     ...||.+|+...+....+.
T Consensus       199 -~~~al~~ia-~~s~GslR~al~lLdq~ia~--~-----~~~It~~~V~~~lg~~~~~  247 (509)
T PRK14958        199 -ENAALDLLA-RAANGSVRDALSLLDQSIAY--G-----NGKVLIADVKTMLGTIEPL  247 (509)
T ss_pred             -CHHHHHHHH-HHcCCcHHHHHHHHHHHHhc--C-----CCCcCHHHHHHHHCCCCHH
Confidence             112222222 22234455555544432211  1     1237777777776655443

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=4.6e-16  Score=168.33  Aligned_cols=238  Identities=39%  Similarity=0.558  Sum_probs=199.7

Q ss_pred             ccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceeh
Q 010975          236 IKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFL  314 (496)
Q Consensus       236 ~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfI  314 (496)
                      +.+++.+... ..++++++++||||+|||+++++++.. +..+..++..+...++.|..+...+.++..+....|+++++
T Consensus         4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~   82 (494)
T COG0464           4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI   82 (494)
T ss_pred             ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence            3444444443 677899999999999999999999999 76668888889999999999999999999999999999999


Q ss_pred             hhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHH--HhhhhhcccCCCHHHHHHH
Q 010975          315 DEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAM  392 (496)
Q Consensus       315 DEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~I  392 (496)
                      ||+|.+.+.+..  ......+.+..+++..+++.. +.. +++++.+|.+..+++++++  ||+..+.+..|+...+.++
T Consensus        83 d~~~~~~~~~~~--~~~~~~~~v~~~l~~~~d~~~-~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei  158 (494)
T COG0464          83 DEIDALAPKRSS--DQGEVERRVVAQLLALMDGLK-RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEI  158 (494)
T ss_pred             chhhhcccCccc--cccchhhHHHHHHHHhccccc-CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHH
Confidence            999999988766  344566788899999999998 777 8899999999999999988  9999999999999999999


Q ss_pred             HHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcC
Q 010975          393 FESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT  472 (496)
Q Consensus       393 l~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~  472 (496)
                      +...........+.+...++..+.|++++++..+++++...+++|..            ........++.+|+.++++++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~------------~~~~~~~~~~~~~~~~~l~~~  226 (494)
T COG0464         159 LQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI------------DLVGEYIGVTEDDFEEALKKV  226 (494)
T ss_pred             HHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh------------ccCcccccccHHHHHHHHHhc
Confidence            99988877777778888999999999999999999999999988864            111122348999999999999


Q ss_pred             CCCccc--hhhhhhhhccccc
Q 010975          473 RPSAHL--HAHRYEKFNADYG  491 (496)
Q Consensus       473 ~Ps~~~--~~~~~~~~~~~~g  491 (496)
                      .|+ ..  ....-..|.+..|
T Consensus       227 ~~~-~~~~~~~~~v~~~digg  246 (494)
T COG0464         227 LPS-RGVLFEDEDVTLDDIGG  246 (494)
T ss_pred             Ccc-cccccCCCCcceehhhc
Confidence            997 22  2344455655554

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=99.63  E-value=1e-15  Score=153.71  Aligned_cols=159  Identities=22%  Similarity=0.373  Sum_probs=110.6

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---eeeee
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNIS  281 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~---~i~v~  281 (496)
                      .+.+..++.+++|.+|+++..-+ .-.+...+...        .-.+++||||||||||+||+.|+.....+   |++++
T Consensus       127 PLaermRPktL~dyvGQ~hlv~q-~gllrs~ieq~--------~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelS  197 (554)
T KOG2028|consen  127 PLAERMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQN--------RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELS  197 (554)
T ss_pred             ChhhhcCcchHHHhcchhhhcCc-chHHHHHHHcC--------CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEe
Confidence            44556678889999999887654 22221111111        12579999999999999999999988655   77776


Q ss_pred             cccccccccCChHHHHHHHHHHhhhc-----CCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEE
Q 010975          282 ASSVVSKWRGDSEKLIKVLFELARHH-----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF  356 (496)
Q Consensus       282 ~s~l~~~~~G~~e~~l~~lf~~a~~~-----~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi  356 (496)
                      +..-       ....++.+|+.++..     +..|||||||+++...             .++.||-.++    .+..++
T Consensus       198 At~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks-------------QQD~fLP~VE----~G~I~l  253 (554)
T KOG2028|consen  198 ATNA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS-------------QQDTFLPHVE----NGDITL  253 (554)
T ss_pred             cccc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh-------------hhhcccceec----cCceEE
Confidence            6442       346678888887652     3469999999998533             2344555443    455566


Q ss_pred             EEeccCCc-ccccHHHHHHhhhhhcccCCCHHHHHHHHHhhC
Q 010975          357 VLAATNLP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLL  397 (496)
Q Consensus       357 VIatTn~p-~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l  397 (496)
                      |.|||.+| ..++.+|++||.. +.+...+.++...|+.+-.
T Consensus       254 IGATTENPSFqln~aLlSRC~V-fvLekL~~n~v~~iL~rai  294 (554)
T KOG2028|consen  254 IGATTENPSFQLNAALLSRCRV-FVLEKLPVNAVVTILMRAI  294 (554)
T ss_pred             EecccCCCccchhHHHHhccce-eEeccCCHHHHHHHHHHHH
Confidence            66777666 6799999999955 6667777777888877743

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.63  E-value=7.8e-16  Score=167.44  Aligned_cols=163  Identities=18%  Similarity=0.211  Sum_probs=119.5

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc----------
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----------  275 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~----------  275 (496)
                      +.+++++.+|++++|++.+++.|...+...           ..++.+||+||||+|||++|+++|+.+++          
T Consensus         5 LarKyRPktFddVIGQe~vv~~L~~aI~~g-----------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg   73 (702)
T PRK14960          5 LARKYRPRNFNELVGQNHVSRALSSALERG-----------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCE   73 (702)
T ss_pred             HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCc
Confidence            456788899999999999999999988532           12367899999999999999999999865          


Q ss_pred             --------------eeeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975          276 --------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL  337 (496)
Q Consensus       276 --------------~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i  337 (496)
                                    .++.+++++-      ..-..++.+...+..    .+..|++|||+|.|...             .
T Consensus        74 ~C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~-------------A  134 (702)
T PRK14960         74 VCATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH-------------S  134 (702)
T ss_pred             cCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-------------H
Confidence                          2333333211      122345555554432    23469999999988422             3


Q ss_pred             hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975          338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG  402 (496)
Q Consensus       338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~  402 (496)
                      .+.|+..++.   ....+.+|.+|+.+..+.+.+++|+.. +.|..++.++....++..+.....
T Consensus       135 ~NALLKtLEE---PP~~v~FILaTtd~~kIp~TIlSRCq~-feFkpLs~eEI~k~L~~Il~kEgI  195 (702)
T PRK14960        135 FNALLKTLEE---PPEHVKFLFATTDPQKLPITVISRCLQ-FTLRPLAVDEITKHLGAILEKEQI  195 (702)
T ss_pred             HHHHHHHHhc---CCCCcEEEEEECChHhhhHHHHHhhhe-eeccCCCHHHHHHHHHHHHHHcCC
Confidence            4567777773   334456677778888899999999965 999999999999999888866544

>PRK04195 replication factor C large subunit; Provisional

Probab=99.62  E-value=9.5e-16  Score=165.40  Aligned_cols=170  Identities=23%  Similarity=0.270  Sum_probs=123.8

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS  284 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~  284 (496)
                      .|.+++.+.++++++|++++++.|.+++.....        ..+++++||+||||||||++|+++|++++.+++.+++++
T Consensus         3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd   74 (482)
T PRK04195          3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD   74 (482)
T ss_pred             CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence            477889999999999999999999998854331        123578999999999999999999999999999999887


Q ss_pred             ccccccCChHHHHHHHHHHhhh------cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEE
Q 010975          285 VVSKWRGDSEKLIKVLFELARH------HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL  358 (496)
Q Consensus       285 l~~~~~G~~e~~l~~lf~~a~~------~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVI  358 (496)
                      ...      ...+..+...+..      ..+.||+|||+|.+.....         ......|+..++.   ..  ..+|
T Consensus        75 ~r~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d---------~~~~~aL~~~l~~---~~--~~iI  134 (482)
T PRK04195         75 QRT------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED---------RGGARAILELIKK---AK--QPII  134 (482)
T ss_pred             ccc------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc---------hhHHHHHHHHHHc---CC--CCEE
Confidence            542      2233333333322      2457999999999854211         1122445555541   11  2356


Q ss_pred             eccCCcccccH-HHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC
Q 010975          359 AATNLPWELDA-AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE  403 (496)
Q Consensus       359 atTn~p~~Ld~-aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~  403 (496)
                      +++|.++.+.. .+++|+. .+.|+.|+.++...+++.++......
T Consensus       135 li~n~~~~~~~k~Lrsr~~-~I~f~~~~~~~i~~~L~~i~~~egi~  179 (482)
T PRK04195        135 LTANDPYDPSLRELRNACL-MIEFKRLSTRSIVPVLKRICRKEGIE  179 (482)
T ss_pred             EeccCccccchhhHhccce-EEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            67888888877 6777774 49999999999999999988665443

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.62  E-value=1.5e-15  Score=158.23  Aligned_cols=162  Identities=15%  Similarity=0.193  Sum_probs=115.5

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------  276 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~---------  276 (496)
                      +.+++++.+|++++|++++++.+...+....           .++.+||+||||+|||++|+++|+.++..         
T Consensus         6 l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~-----------~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~   74 (363)
T PRK14961          6 LARKWRPQYFRDIIGQKHIVTAISNGLSLGR-----------IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCR   74 (363)
T ss_pred             HHHHhCCCchhhccChHHHHHHHHHHHHcCC-----------CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence            5567888999999999999999998775421           23568999999999999999999988642         


Q ss_pred             ---------------eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975          277 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL  337 (496)
Q Consensus       277 ---------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i  337 (496)
                                     ++.++++.      ...-..++.+.+.+..    ....|++|||+|.+..             ..
T Consensus        75 ~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-------------~a  135 (363)
T PRK14961         75 KCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-------------HS  135 (363)
T ss_pred             CCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-------------HH
Confidence                           11111110      0122345555555432    2235999999998842             22


Q ss_pred             hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975          338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                      .+.|+..++.   .+..+.+|.+|+.++.+.+++++|+.. +.+++|+.++...+++..+...+
T Consensus       136 ~naLLk~lEe---~~~~~~fIl~t~~~~~l~~tI~SRc~~-~~~~~l~~~el~~~L~~~~~~~g  195 (363)
T PRK14961        136 FNALLKTLEE---PPQHIKFILATTDVEKIPKTILSRCLQ-FKLKIISEEKIFNFLKYILIKES  195 (363)
T ss_pred             HHHHHHHHhc---CCCCeEEEEEcCChHhhhHHHHhhceE-EeCCCCCHHHHHHHHHHHHHHcC
Confidence            3557777763   333455666777788899999999954 99999999999999998776544

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=99.61  E-value=7.9e-16  Score=151.94  Aligned_cols=182  Identities=21%  Similarity=0.236  Sum_probs=130.1

Q ss_pred             hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc------ee
Q 010975          204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------TF  277 (496)
Q Consensus       204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~------~~  277 (496)
                      +.|.+++.+.+++++.|++.+++.|...+.. ..           ..++|||||||||||+.|+++|++++.      .+
T Consensus        24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~-~~-----------lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rv   91 (346)
T KOG0989|consen   24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLR-RI-----------LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRV   91 (346)
T ss_pred             cchHHHhCCCcHHhhcchHHHHHHHHHHHhh-cC-----------CceEEeeCCCCCcHhHHHHHHHHHhcCccccccch
Confidence            5678888999999999999999999998865 21           148999999999999999999999965      35


Q ss_pred             eeeecccccccccCChHHHHHHHHHHhhh---------cC-CcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC
Q 010975          278 FNISASSVVSKWRGDSEKLIKVLFELARH---------HA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG  347 (496)
Q Consensus       278 i~v~~s~l~~~~~G~~e~~l~~lf~~a~~---------~~-p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~  347 (496)
                      ...+.++-.+..++  ..++. -|++...         .+ +.|++|||.|.|..+             ...+|...|+.
T Consensus        92 l~lnaSderGisvv--r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd-------------aq~aLrr~mE~  155 (346)
T KOG0989|consen   92 LELNASDERGISVV--REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD-------------AQAALRRTMED  155 (346)
T ss_pred             hhhcccccccccch--hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhHH-------------HHHHHHHHHhc
Confidence            56666665554321  11111 1222211         11 259999999999754             33567777774


Q ss_pred             ccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCC-CcceeeecccC
Q 010975          348 LTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG  417 (496)
Q Consensus       348 ~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~-~l~~la~~t~g  417 (496)
                      .   ...+.+|..||.++.+...+.+|+.+ +.|+....+.....|+.+....+..-+. .++.++..++|
T Consensus       156 ~---s~~trFiLIcnylsrii~pi~SRC~K-frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G  222 (346)
T KOG0989|consen  156 F---SRTTRFILICNYLSRIIRPLVSRCQK-FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG  222 (346)
T ss_pred             c---ccceEEEEEcCChhhCChHHHhhHHH-hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence            3   33466777899999999999999988 8888888888888888888776665332 24445554443

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=99.61  E-value=2e-15  Score=165.93  Aligned_cols=162  Identities=22%  Similarity=0.264  Sum_probs=118.1

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------  276 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~---------  276 (496)
                      +.+++++.+|+|++|++.+++.|...+....           .++.+||+||+|+|||++|+.+|+.+++.         
T Consensus         6 La~KyRP~~f~divGQe~vv~~L~~~l~~~r-----------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg   74 (647)
T PRK07994          6 LARKWRPQTFAEVVGQEHVLTALANALDLGR-----------LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCG   74 (647)
T ss_pred             HHHHhCCCCHHHhcCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCC
Confidence            4566788999999999999999998885422           23457999999999999999999999663         


Q ss_pred             ---------------eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975          277 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL  337 (496)
Q Consensus       277 ---------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i  337 (496)
                                     ++.++..+      ...-..++.+.+.+..    ....|++|||+|.|..             ..
T Consensus        75 ~C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-------------~a  135 (647)
T PRK07994         75 ECDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-------------HS  135 (647)
T ss_pred             CCHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-------------HH
Confidence                           22222211      0112335555544332    2346999999998842             34


Q ss_pred             hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975          338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                      .+.||+.|+   ..+..+.+|.+|+++..+.+.+++|+ ..+.|..++.++....++..+....
T Consensus       136 ~NALLKtLE---EPp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~  195 (647)
T PRK07994        136 FNALLKTLE---EPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQ  195 (647)
T ss_pred             HHHHHHHHH---cCCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcC
Confidence            577888887   34445667777888889999999998 4599999999999998888875543

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.60  E-value=1.5e-15  Score=169.47  Aligned_cols=167  Identities=18%  Similarity=0.194  Sum_probs=116.5

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceee-e-eecc
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF-N-ISAS  283 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i-~-v~~s  283 (496)
                      +.+++++.+|++|+|++++++.|...+....           .++.+||+||||||||++|+++|+.+++.-. . ..|.
T Consensus         6 LaeKyRP~tFddIIGQe~Iv~~LknaI~~~r-----------l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg   74 (944)
T PRK14949          6 LARKWRPATFEQMVGQSHVLHALTNALTQQR-----------LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCG   74 (944)
T ss_pred             HHHHhCCCCHHHhcCcHHHHHHHHHHHHhCC-----------CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCC
Confidence            4567888999999999999999998875421           2345799999999999999999999965411 0 0000


Q ss_pred             ------cccc-------cccC---ChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhh
Q 010975          284 ------SVVS-------KWRG---DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI  343 (496)
Q Consensus       284 ------~l~~-------~~~G---~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~  343 (496)
                            .+..       .+.+   ..-..++.+.+.+..    ....|++|||+|.|.             ....+.|++
T Consensus        75 ~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-------------~eAqNALLK  141 (944)
T PRK14949         75 VCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-------------RSSFNALLK  141 (944)
T ss_pred             CchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-------------HHHHHHHHH
Confidence                  0000       0001   112334555544432    234699999999984             334577888


Q ss_pred             hccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCC
Q 010975          344 QMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ  400 (496)
Q Consensus       344 ~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~  400 (496)
                      .|+.   .+..+.+|.+|+.+..|.+.+++|+.. +.|..++.++....+++.+...
T Consensus       142 tLEE---PP~~vrFILaTTe~~kLl~TIlSRCq~-f~fkpLs~eEI~~~L~~il~~E  194 (944)
T PRK14949        142 TLEE---PPEHVKFLLATTDPQKLPVTVLSRCLQ-FNLKSLTQDEIGTQLNHILTQE  194 (944)
T ss_pred             HHhc---cCCCeEEEEECCCchhchHHHHHhheE-EeCCCCCHHHHHHHHHHHHHHc
Confidence            8873   344455666788888899999999955 9999999999999888877654

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=99.60  E-value=2.1e-15  Score=154.56  Aligned_cols=169  Identities=21%  Similarity=0.254  Sum_probs=114.7

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc-----ceeee
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFN  279 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~-----~~~i~  279 (496)
                      -|.+++.+.+|++++|++.+++.|...+....            ..+++|+||||||||++|+++++++.     .+++.
T Consensus         4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~------------~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~   71 (337)
T PRK12402          4 LWTEKYRPALLEDILGQDEVVERLSRAVDSPN------------LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTE   71 (337)
T ss_pred             chHHhhCCCcHHHhcCCHHHHHHHHHHHhCCC------------CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEE
Confidence            46778889999999999999999999875321            13799999999999999999999883     35678


Q ss_pred             eeccccccccc-------------CC-------hHHHHHHHHHHhhh-----cCCcceehhhHHHHHhhhcCCcchhHHh
Q 010975          280 ISASSVVSKWR-------------GD-------SEKLIKVLFELARH-----HAPSTIFLDEIDAIISQRGEARSEHEAS  334 (496)
Q Consensus       280 v~~s~l~~~~~-------------G~-------~e~~l~~lf~~a~~-----~~p~ILfIDEID~L~~~r~~~~~~~~~~  334 (496)
                      ++++++.....             +.       ....++.+......     ..+.+|+|||+|.+...           
T Consensus        72 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~-----------  140 (337)
T PRK12402         72 FNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED-----------  140 (337)
T ss_pred             echhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH-----------
Confidence            88766532210             00       11223333333222     22469999999987322           


Q ss_pred             hhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975          335 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG  402 (496)
Q Consensus       335 ~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~  402 (496)
                        ....|...++....  . ..+|.+++.+..+.+++.+|+. .+.+.+|+.++...+++..+.....
T Consensus       141 --~~~~L~~~le~~~~--~-~~~Il~~~~~~~~~~~L~sr~~-~v~~~~~~~~~~~~~l~~~~~~~~~  202 (337)
T PRK12402        141 --AQQALRRIMEQYSR--T-CRFIIATRQPSKLIPPIRSRCL-PLFFRAPTDDELVDVLESIAEAEGV  202 (337)
T ss_pred             --HHHHHHHHHHhccC--C-CeEEEEeCChhhCchhhcCCce-EEEecCCCHHHHHHHHHHHHHHcCC
Confidence              12334455543222  2 2344456666677788999985 4899999999999999988765543

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=99.60  E-value=3e-15  Score=164.14  Aligned_cols=163  Identities=20%  Similarity=0.231  Sum_probs=119.6

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhccee--------
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF--------  277 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~--------  277 (496)
                      +.+++++.+|+||+|++++++.|...+...           ..++++||+||+|+|||++|+++|+.++++-        
T Consensus         6 LarKYRP~tFddIIGQe~vv~~L~~ai~~~-----------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg   74 (709)
T PRK08691          6 LARKWRPKTFADLVGQEHVVKALQNALDEG-----------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCG   74 (709)
T ss_pred             HHHHhCCCCHHHHcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Confidence            456788999999999999999999987642           2346799999999999999999999885431        


Q ss_pred             ----------------eeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975          278 ----------------FNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL  337 (496)
Q Consensus       278 ----------------i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i  337 (496)
                                      +.++...      ......++.+++.+..    ....|++|||+|.|..             ..
T Consensus        75 ~C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-------------~A  135 (709)
T PRK08691         75 VCQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-------------SA  135 (709)
T ss_pred             ccHHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-------------HH
Confidence                            1222111      1223456666665432    2346999999987632             23


Q ss_pred             hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975          338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG  402 (496)
Q Consensus       338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~  402 (496)
                      .+.|++.|+.   ....+.+|.+|+.+..+...+++||.. +.|+.++.++....++..+.....
T Consensus       136 ~NALLKtLEE---Pp~~v~fILaTtd~~kL~~TIrSRC~~-f~f~~Ls~eeI~~~L~~Il~kEgi  196 (709)
T PRK08691        136 FNAMLKTLEE---PPEHVKFILATTDPHKVPVTVLSRCLQ-FVLRNMTAQQVADHLAHVLDSEKI  196 (709)
T ss_pred             HHHHHHHHHh---CCCCcEEEEEeCCccccchHHHHHHhh-hhcCCCCHHHHHHHHHHHHHHcCC
Confidence            4568888773   334466777788898999999999954 999999999999999988876543

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.60  E-value=3.1e-15  Score=159.98  Aligned_cols=164  Identities=19%  Similarity=0.211  Sum_probs=121.0

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc----------
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----------  275 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~----------  275 (496)
                      +.+++++.+|+|++|++.+++.|...+...           ..++++||+||||+|||++|+.+|+.+++          
T Consensus         3 la~KyRP~~f~dliGQe~vv~~L~~a~~~~-----------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg   71 (491)
T PRK14964          3 LALKYRPSSFKDLVGQDVLVRILRNAFTLN-----------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCG   71 (491)
T ss_pred             hhHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcc
Confidence            346788899999999999999998877542           23468999999999999999999997642          


Q ss_pred             --------------eeeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975          276 --------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL  337 (496)
Q Consensus       276 --------------~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i  337 (496)
                                    .++++++++-      ..-..++.+.+.+..    ....|++|||+|.|..             ..
T Consensus        72 ~C~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-------------~A  132 (491)
T PRK14964         72 TCHNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-------------SA  132 (491)
T ss_pred             ccHHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-------------HH
Confidence                          2344444321      123456666666543    2346999999988732             23


Q ss_pred             hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC
Q 010975          338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE  403 (496)
Q Consensus       338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~  403 (496)
                      .+.|+..++.   .+..+.+|.+|+.+..+.+.+++|+.. +.+..++.++....++..+...+..
T Consensus       133 ~NaLLK~LEe---Pp~~v~fIlatte~~Kl~~tI~SRc~~-~~f~~l~~~el~~~L~~ia~~Egi~  194 (491)
T PRK14964        133 FNALLKTLEE---PAPHVKFILATTEVKKIPVTIISRCQR-FDLQKIPTDKLVEHLVDIAKKENIE  194 (491)
T ss_pred             HHHHHHHHhC---CCCCeEEEEEeCChHHHHHHHHHhhee-eecccccHHHHHHHHHHHHHHcCCC
Confidence            4678888873   334466666778888899999999965 9999999999999999887765443

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=99.60  E-value=3.4e-15  Score=160.68  Aligned_cols=164  Identities=19%  Similarity=0.219  Sum_probs=120.2

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhccee-------
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF-------  277 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~-------  277 (496)
                      .+.+++++.+|+|++|++.+++.|...+...           ..+.++||+||||||||++|+++|+.+++.-       
T Consensus        10 ~la~kyRP~~f~dliGq~~vv~~L~~ai~~~-----------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~   78 (507)
T PRK06645         10 PFARKYRPSNFAELQGQEVLVKVLSYTILND-----------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTT   78 (507)
T ss_pred             chhhhhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcC
Confidence            4567789999999999999999998866432           1246899999999999999999999986521       


Q ss_pred             ---------------------eeeecccccccccCChHHHHHHHHHHhhhc----CCcceehhhHHHHHhhhcCCcchhH
Q 010975          278 ---------------------FNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHE  332 (496)
Q Consensus       278 ---------------------i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~----~p~ILfIDEID~L~~~r~~~~~~~~  332 (496)
                                           +++++.+      ......++.+++.+...    ...|++|||+|.+..          
T Consensus        79 ~~~C~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~----------  142 (507)
T PRK06645         79 IKTCEQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK----------  142 (507)
T ss_pred             cCCCCCChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH----------
Confidence                                 1111110      12335566777666532    345999999998842          


Q ss_pred             HhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975          333 ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG  402 (496)
Q Consensus       333 ~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~  402 (496)
                         ...+.|+..++   ..+..+++|.+|+.++.+.+++++|+.. +.+..++.++...+++..+.....
T Consensus       143 ---~a~naLLk~LE---epp~~~vfI~aTte~~kI~~tI~SRc~~-~ef~~ls~~el~~~L~~i~~~egi  205 (507)
T PRK06645        143 ---GAFNALLKTLE---EPPPHIIFIFATTEVQKIPATIISRCQR-YDLRRLSFEEIFKLLEYITKQENL  205 (507)
T ss_pred             ---HHHHHHHHHHh---hcCCCEEEEEEeCChHHhhHHHHhcceE-EEccCCCHHHHHHHHHHHHHHcCC
Confidence               23456777776   3344556666777888899999999954 899999999999999998876543

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.58  E-value=5.6e-15  Score=161.15  Aligned_cols=163  Identities=18%  Similarity=0.186  Sum_probs=116.2

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce--------
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------  276 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~--------  276 (496)
                      -+.+++++.+|+||+|++.+++.|...+....           ...++||+||||||||++|+.+|+.++..        
T Consensus         5 ~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~r-----------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pC   73 (624)
T PRK14959          5 SLTARYRPQTFAEVAGQETVKAILSRAAQENR-----------VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPC   73 (624)
T ss_pred             hHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCC-----------CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCC
Confidence            35677889999999999999999999885421           13579999999999999999999998653        


Q ss_pred             ----------------eeeeecccccccccCChHHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCcchhHHhhh
Q 010975          277 ----------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRR  336 (496)
Q Consensus       277 ----------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~  336 (496)
                                      ++.++...-      ..-..++.+.+.+.    .....||+|||+|.|..             .
T Consensus        74 g~C~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-------------~  134 (624)
T PRK14959         74 NTCEQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-------------E  134 (624)
T ss_pred             cccHHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH-------------H
Confidence                            233332110      11123333332222    22346999999999842             2


Q ss_pred             hhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975          337 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       337 i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                      ..+.|+..++.   ....+++|.+|+.+..+.+.+++|+.. +.|+.++.++...+++..+....
T Consensus       135 a~naLLk~LEE---P~~~~ifILaTt~~~kll~TI~SRcq~-i~F~pLs~~eL~~~L~~il~~eg  195 (624)
T PRK14959        135 AFNALLKTLEE---PPARVTFVLATTEPHKFPVTIVSRCQH-FTFTRLSEAGLEAHLTKVLGREG  195 (624)
T ss_pred             HHHHHHHHhhc---cCCCEEEEEecCChhhhhHHHHhhhhc-cccCCCCHHHHHHHHHHHHHHcC
Confidence            34667887763   233466777788888888899999965 89999999999998888775543

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.57  E-value=7e-15  Score=161.22  Aligned_cols=163  Identities=17%  Similarity=0.227  Sum_probs=117.8

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------  276 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~---------  276 (496)
                      +.+++++.+|+|++|++++++.|...+....           .++.+||+||+|+|||++|+++|+.+++.         
T Consensus         6 la~KyRP~~f~dviGQe~vv~~L~~~l~~~r-----------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~   74 (618)
T PRK14951          6 LARKYRPRSFSEMVGQEHVVQALTNALTQQR-----------LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT   74 (618)
T ss_pred             HHHHHCCCCHHHhcCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC
Confidence            4567888999999999999999999885432           23568999999999999999999988642         


Q ss_pred             --------------------eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhH
Q 010975          277 --------------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHE  332 (496)
Q Consensus       277 --------------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~  332 (496)
                                          ++.++..+      ...-..++.+.+.+..    ....|++|||+|.|...         
T Consensus        75 ~~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~---------  139 (618)
T PRK14951         75 ATPCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT---------  139 (618)
T ss_pred             CCCCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH---------
Confidence                                22222211      0112345666655432    22359999999998432         


Q ss_pred             HhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975          333 ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG  402 (496)
Q Consensus       333 ~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~  402 (496)
                          ..+.|+..++.   .+..+.+|.+|+++..+.+.+++|+.. +.|..++.++....++..+...+.
T Consensus       140 ----a~NaLLKtLEE---PP~~~~fIL~Ttd~~kil~TIlSRc~~-~~f~~Ls~eei~~~L~~i~~~egi  201 (618)
T PRK14951        140 ----AFNAMLKTLEE---PPEYLKFVLATTDPQKVPVTVLSRCLQ-FNLRPMAPETVLEHLTQVLAAENV  201 (618)
T ss_pred             ----HHHHHHHhccc---CCCCeEEEEEECCchhhhHHHHHhcee-eecCCCCHHHHHHHHHHHHHHcCC
Confidence                24667777763   344456666777888888899999954 999999999999988888765543

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=99.57  E-value=9.2e-15  Score=163.38  Aligned_cols=217  Identities=20%  Similarity=0.299  Sum_probs=135.1

Q ss_pred             hhhCCCCCccchhhcchHHHH---HHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975          206 IIRGSPDVKWESIKGLENAKR---LLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA  282 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~---~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~  282 (496)
                      +.+++++.+++|++|++++..   .|.+.+...            ...+++|+||||||||++|+++|+.++.+++.+++
T Consensus        18 Laek~RP~tldd~vGQe~ii~~~~~L~~~i~~~------------~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna   85 (725)
T PRK13341         18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKAD------------RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA   85 (725)
T ss_pred             hHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcC------------CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence            455667788999999999884   455555321            12579999999999999999999999999988887


Q ss_pred             ccccccccCChHHHHHHHHHHhh-----hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEE
Q 010975          283 SSVVSKWRGDSEKLIKVLFELAR-----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV  357 (496)
Q Consensus       283 s~l~~~~~G~~e~~l~~lf~~a~-----~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV  357 (496)
                      ....       ...++..+..+.     .....+|||||+|.+...             .++.|+..++    ... +++
T Consensus        86 ~~~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~-------------qQdaLL~~lE----~g~-IiL  140 (725)
T PRK13341         86 VLAG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA-------------QQDALLPWVE----NGT-ITL  140 (725)
T ss_pred             hhhh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-------------HHHHHHHHhc----Cce-EEE
Confidence            5311       122333333321     123469999999988432             1234555554    233 444


Q ss_pred             Ee-ccCCc-ccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC---CCCCCcceeeecccCCcCCchhhcchhhhc
Q 010975          358 LA-ATNLP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG---EESLPYDLLVERTEGYSGSDIRLVSKEAAM  432 (496)
Q Consensus       358 Ia-tTn~p-~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~---~~~~~l~~la~~t~g~s~~dI~~l~~~A~~  432 (496)
                      |+ ||..+ ..+++++++|+. .+.+++++.+++..+++..+.....   .....          ++...+..+++.+ .
T Consensus       141 I~aTTenp~~~l~~aL~SR~~-v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~----------I~deaL~~La~~s-~  208 (725)
T PRK13341        141 IGATTENPYFEVNKALVSRSR-LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVD----------LEPEAEKHLVDVA-N  208 (725)
T ss_pred             EEecCCChHhhhhhHhhcccc-ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccC----------CCHHHHHHHHHhC-C
Confidence            44 44444 568999999985 5999999999999999998763211   01111          2223333444333 5


Q ss_pred             cHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcC
Q 010975          433 QPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT  472 (496)
Q Consensus       433 ~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~  472 (496)
                      +.+|++++.++.......... .....||.+++++++.+.
T Consensus       209 GD~R~lln~Le~a~~~~~~~~-~~~i~It~~~~~e~l~~~  247 (725)
T PRK13341        209 GDARSLLNALELAVESTPPDE-DGLIDITLAIAEESIQQR  247 (725)
T ss_pred             CCHHHHHHHHHHHHHhcccCC-CCceeccHHHHHHHHHHh
Confidence            566666666654322111111 111237888888887663

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=99.57  E-value=6.2e-15  Score=150.27  Aligned_cols=163  Identities=17%  Similarity=0.122  Sum_probs=115.1

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS  284 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~  284 (496)
                      .|.+++++.++++++|++++++.+...+...           ..++.+||+||||+|||++|++++++.+.+++.+++++
T Consensus        10 ~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~   78 (316)
T PHA02544         10 MWEQKYRPSTIDECILPAADKETFKSIVKKG-----------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD   78 (316)
T ss_pred             cceeccCCCcHHHhcCcHHHHHHHHHHHhcC-----------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence            4677888999999999999999999887531           12345667999999999999999999999999998876


Q ss_pred             ccccccCChHHHHHHHHHHhh-hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCC
Q 010975          285 VVSKWRGDSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL  363 (496)
Q Consensus       285 l~~~~~G~~e~~l~~lf~~a~-~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~  363 (496)
                        +. .......+........ ...+.||+|||+|.+...            .....|...++..   ...+.+|++||.
T Consensus        79 --~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~------------~~~~~L~~~le~~---~~~~~~Ilt~n~  140 (316)
T PHA02544         79 --CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA------------DAQRHLRSFMEAY---SKNCSFIITANN  140 (316)
T ss_pred             --cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH------------HHHHHHHHHHHhc---CCCceEEEEcCC
Confidence              21 1111122222222111 124579999999987221            0112333344432   233567778999


Q ss_pred             cccccHHHHHHhhhhhcccCCCHHHHHHHHHhhC
Q 010975          364 PWELDAAMLRRLEKRILVPLPDTEARRAMFESLL  397 (496)
Q Consensus       364 p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l  397 (496)
                      +..+.+++++||.. +.++.|+.+++..+++.++
T Consensus       141 ~~~l~~~l~sR~~~-i~~~~p~~~~~~~il~~~~  173 (316)
T PHA02544        141 KNGIIEPLRSRCRV-IDFGVPTKEEQIEMMKQMI  173 (316)
T ss_pred             hhhchHHHHhhceE-EEeCCCCHHHHHHHHHHHH
Confidence            99999999999964 8999999999988877643

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.57  E-value=6.2e-15  Score=159.11  Aligned_cols=163  Identities=21%  Similarity=0.274  Sum_probs=117.4

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------  276 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~---------  276 (496)
                      +.+++++.+|+|++|++++++.|...+....           .++.+||+||||||||++|+++|+.+...         
T Consensus         4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~-----------l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~   72 (504)
T PRK14963          4 LYQRARPITFDEVVGQEHVKEVLLAALRQGR-----------LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGE   72 (504)
T ss_pred             HHHhhCCCCHHHhcChHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCc
Confidence            4567889999999999999999999886421           23457999999999999999999988531         


Q ss_pred             --------------eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhh
Q 010975          277 --------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK  338 (496)
Q Consensus       277 --------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~  338 (496)
                                    ++.++.++      ...-..++.+.+.+..    ..+.|++|||+|.+.             ....
T Consensus        73 C~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-------------~~a~  133 (504)
T PRK14963         73 CESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-------------KSAF  133 (504)
T ss_pred             ChhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-------------HHHH
Confidence                          33333321      1122345555444332    245699999998763             2234


Q ss_pred             hhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975          339 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG  402 (496)
Q Consensus       339 ~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~  402 (496)
                      +.|+..++.   ....+++|.+|+.+..+.+.+.+|+.. +.|..|+.++....++..+.....
T Consensus       134 naLLk~LEe---p~~~t~~Il~t~~~~kl~~~I~SRc~~-~~f~~ls~~el~~~L~~i~~~egi  193 (504)
T PRK14963        134 NALLKTLEE---PPEHVIFILATTEPEKMPPTILSRTQH-FRFRRLTEEEIAGKLRRLLEAEGR  193 (504)
T ss_pred             HHHHHHHHh---CCCCEEEEEEcCChhhCChHHhcceEE-EEecCCCHHHHHHHHHHHHHHcCC
Confidence            567777763   333455666778888999999999965 999999999999999988866543

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=99.56  E-value=4.2e-15  Score=155.81  Aligned_cols=187  Identities=16%  Similarity=0.188  Sum_probs=123.6

Q ss_pred             ccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhccee----------------
Q 010975          214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF----------------  277 (496)
Q Consensus       214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~----------------  277 (496)
                      .|++|+|++++++.|...+.....+...+.  ...++++||+||||+|||++|+++|+.+...-                
T Consensus         3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~--~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~   80 (394)
T PRK07940          3 VWDDLVGQEAVVAELRAAARAARADVAAAG--SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL   80 (394)
T ss_pred             hhhhccChHHHHHHHHHHHHhccccccccC--CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence            489999999999999999976554322221  22457899999999999999999999874431                


Q ss_pred             -------eeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc
Q 010975          278 -------FNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD  346 (496)
Q Consensus       278 -------i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld  346 (496)
                             ..+....     ..-.-..++.+++.+..    ....|++|||+|.|...             ..+.|++.|+
T Consensus        81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-------------aanaLLk~LE  142 (394)
T PRK07940         81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-------------AANALLKAVE  142 (394)
T ss_pred             cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-------------HHHHHHHHhh
Confidence                   1111100     01122346677766653    23459999999999432             2366888887


Q ss_pred             CccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhc
Q 010975          347 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLV  426 (496)
Q Consensus       347 ~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l  426 (496)
                      ..  ... +++|.+|++++.+.++++||+. .+.|+.|+.++...++....   ... ......++..+.|..+..++.+
T Consensus       143 ep--~~~-~~fIL~a~~~~~llpTIrSRc~-~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~l~  214 (394)
T PRK07940        143 EP--PPR-TVWLLCAPSPEDVLPTIRSRCR-HVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARRLA  214 (394)
T ss_pred             cC--CCC-CeEEEEECChHHChHHHHhhCe-EEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHHHh
Confidence            32  233 4445555668899999999995 59999999999888776321   111 2223456777777766555544


Q ss_pred             ch
Q 010975          427 SK  428 (496)
Q Consensus       427 ~~  428 (496)
                      ..
T Consensus       215 ~~  216 (394)
T PRK07940        215 TD  216 (394)
T ss_pred             cC
Confidence            43

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=99.56  E-value=6.8e-15  Score=160.95  Aligned_cols=163  Identities=21%  Similarity=0.257  Sum_probs=119.4

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------  276 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~---------  276 (496)
                      +.+++++.+|++++|++++++.|...+...           ..++.+||+||+|||||++|+.+|+.+++.         
T Consensus         6 l~~k~rP~~f~~viGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~   74 (559)
T PRK05563          6 LYRKWRPQTFEDVVGQEHITKTLKNAIKQG-----------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCN   74 (559)
T ss_pred             HHHHhCCCcHHhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence            557788999999999999999999987542           123568999999999999999999988532         


Q ss_pred             ---------------eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975          277 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL  337 (496)
Q Consensus       277 ---------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i  337 (496)
                                     ++.++++.      +..-..++.+.+.+..    ....|++|||+|.|..             ..
T Consensus        75 ~C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-------------~a  135 (559)
T PRK05563         75 ECEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-------------GA  135 (559)
T ss_pred             ccHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-------------HH
Confidence                           23333221      1223456666666543    2346999999998732             23


Q ss_pred             hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975          338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG  402 (496)
Q Consensus       338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~  402 (496)
                      .+.|+..++.   .+..+++|.+|+.++.+.+.+++|+.. +.|..|+.++....++..+...+.
T Consensus       136 ~naLLKtLEe---pp~~~ifIlatt~~~ki~~tI~SRc~~-~~f~~~~~~ei~~~L~~i~~~egi  196 (559)
T PRK05563        136 FNALLKTLEE---PPAHVIFILATTEPHKIPATILSRCQR-FDFKRISVEDIVERLKYILDKEGI  196 (559)
T ss_pred             HHHHHHHhcC---CCCCeEEEEEeCChhhCcHHHHhHheE-EecCCCCHHHHHHHHHHHHHHcCC
Confidence            4677777763   334455666677888999999999965 899999999999999888765543

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.56  E-value=9.4e-15  Score=159.60  Aligned_cols=163  Identities=18%  Similarity=0.171  Sum_probs=116.8

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------  276 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~---------  276 (496)
                      +.+++++.+|+|++|++++++.|...+....           .++.+||+||+|||||++|+++|+.+++.         
T Consensus         3 l~~kyRP~~f~eivGq~~i~~~L~~~i~~~r-----------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg   71 (584)
T PRK14952          3 LYRKYRPATFAEVVGQEHVTEPLSSALDAGR-----------INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCG   71 (584)
T ss_pred             HHHHhCCCcHHHhcCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccc
Confidence            3467889999999999999999999885421           23458999999999999999999988642         


Q ss_pred             -----------------eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhh
Q 010975          277 -----------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASR  335 (496)
Q Consensus       277 -----------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~  335 (496)
                                       ++.++++..      ..-..++.+.+.+..    ....|++|||+|.|..             
T Consensus        72 ~C~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-------------  132 (584)
T PRK14952         72 VCESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-------------  132 (584)
T ss_pred             ccHHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-------------
Confidence                             222222111      012334444444322    2345999999988842             


Q ss_pred             hhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975          336 RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG  402 (496)
Q Consensus       336 ~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~  402 (496)
                      ...+.|+..|+.   .+..+++|.+|+.+..+.+++++|+.. +.|..++.++....++.++.....
T Consensus       133 ~A~NALLK~LEE---pp~~~~fIL~tte~~kll~TI~SRc~~-~~F~~l~~~~i~~~L~~i~~~egi  195 (584)
T PRK14952        133 AGFNALLKIVEE---PPEHLIFIFATTEPEKVLPTIRSRTHH-YPFRLLPPRTMRALIARICEQEGV  195 (584)
T ss_pred             HHHHHHHHHHhc---CCCCeEEEEEeCChHhhHHHHHHhceE-EEeeCCCHHHHHHHHHHHHHHcCC
Confidence            245678888873   344566677778888999999999854 999999999999888888766543

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.56  E-value=1e-14  Score=158.08  Aligned_cols=162  Identities=17%  Similarity=0.210  Sum_probs=114.6

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc----------
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----------  275 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~----------  275 (496)
                      +.+++++.+|++++|++.+++.|...+....           .++.+||+||||+|||++|+.+|+.++.          
T Consensus         6 La~KyRP~~f~diiGq~~~v~~L~~~i~~~r-----------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg   74 (546)
T PRK14957          6 LARKYRPQSFAEVAGQQHALNSLVHALETQK-----------VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCN   74 (546)
T ss_pred             HHHHHCcCcHHHhcCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCc
Confidence            4567788999999999999999998875421           2346899999999999999999998854          


Q ss_pred             --------------eeeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975          276 --------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL  337 (496)
Q Consensus       276 --------------~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i  337 (496)
                                    .++.++...-    .  .-..++.+++.+..    ....|++|||+|.+..             ..
T Consensus        75 ~C~sC~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-------------~a  135 (546)
T PRK14957         75 KCENCVAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-------------QS  135 (546)
T ss_pred             ccHHHHHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-------------HH
Confidence                          2222222110    1  11234445444432    2346999999998842             23


Q ss_pred             hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975          338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                      .+.|+..++.   .+..+.+|.+|+++..+.+++++|+.. +.|..++.++....++..+....
T Consensus       136 ~naLLK~LEe---pp~~v~fIL~Ttd~~kil~tI~SRc~~-~~f~~Ls~~eI~~~L~~il~~eg  195 (546)
T PRK14957        136 FNALLKTLEE---PPEYVKFILATTDYHKIPVTILSRCIQ-LHLKHISQADIKDQLKIILAKEN  195 (546)
T ss_pred             HHHHHHHHhc---CCCCceEEEEECChhhhhhhHHHheee-EEeCCCCHHHHHHHHHHHHHHcC
Confidence            4678888873   334455666667788888889999954 99999999998888888776543

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=99.56  E-value=1.2e-14  Score=164.25  Aligned_cols=163  Identities=20%  Similarity=0.174  Sum_probs=116.6

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------  276 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~---------  276 (496)
                      +.+++++.+|++|+|++++++.|...+....           .++.+||+||+|||||++|+.+|+.+++.         
T Consensus         5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~r-----------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg   73 (824)
T PRK07764          5 LYRRYRPATFAEVIGQEHVTEPLSTALDSGR-----------INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCG   73 (824)
T ss_pred             HHHHhCCCCHHHhcCcHHHHHHHHHHHHhCC-----------CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCc
Confidence            4577889999999999999999999875421           22458999999999999999999999642         


Q ss_pred             -----------------eeeeecccccccccCChHHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCcchhHHhh
Q 010975          277 -----------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASR  335 (496)
Q Consensus       277 -----------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~~~~~~~~  335 (496)
                                       ++.++....      ..-..++.+.+.+.    .....|+||||+|.|..             
T Consensus        74 ~C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-------------  134 (824)
T PRK07764         74 ECDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-------------  134 (824)
T ss_pred             ccHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-------------
Confidence                             122222110      01233344333322    23456999999999843             


Q ss_pred             hhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975          336 RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG  402 (496)
Q Consensus       336 ~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~  402 (496)
                      ...+.||+.|+.   ....+++|.+|+.++.|.+.|++|+.. +.|..++.++...+++.++.....
T Consensus       135 ~a~NaLLK~LEE---pP~~~~fIl~tt~~~kLl~TIrSRc~~-v~F~~l~~~~l~~~L~~il~~EGv  197 (824)
T PRK07764        135 QGFNALLKIVEE---PPEHLKFIFATTEPDKVIGTIRSRTHH-YPFRLVPPEVMRGYLERICAQEGV  197 (824)
T ss_pred             HHHHHHHHHHhC---CCCCeEEEEEeCChhhhhHHHHhheeE-EEeeCCCHHHHHHHHHHHHHHcCC
Confidence            234678888874   334456666778888899999999955 999999999999999888765543

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.56  E-value=1.1e-14  Score=158.34  Aligned_cols=162  Identities=19%  Similarity=0.237  Sum_probs=116.6

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------  276 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~---------  276 (496)
                      +.+++++.+|+|++|++++++.|...+....           .++.+||+||||+|||++|+.+|+.++..         
T Consensus         6 l~~k~rP~~f~divGq~~v~~~L~~~i~~~~-----------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg   74 (527)
T PRK14969          6 LARKWRPKSFSELVGQEHVVRALTNALEQQR-----------LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCG   74 (527)
T ss_pred             HHHHhCCCcHHHhcCcHHHHHHHHHHHHcCC-----------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence            4567788899999999999999998875421           23568999999999999999999998652         


Q ss_pred             ---------------eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975          277 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL  337 (496)
Q Consensus       277 ---------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i  337 (496)
                                     ++.++++.      ......++.+.+.+..    ....|++|||+|.+..             ..
T Consensus        75 ~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-------------~a  135 (527)
T PRK14969         75 VCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-------------SA  135 (527)
T ss_pred             CCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-------------HH
Confidence                           11222110      1123445666665542    2245999999998742             23


Q ss_pred             hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975          338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                      .+.|++.++.   .+..+.+|.+|+++..+.+.+++|+. .+.|..++.++....++..+....
T Consensus       136 ~naLLK~LEe---pp~~~~fIL~t~d~~kil~tI~SRc~-~~~f~~l~~~~i~~~L~~il~~eg  195 (527)
T PRK14969        136 FNAMLKTLEE---PPEHVKFILATTDPQKIPVTVLSRCL-QFNLKQMPPPLIVSHLQHILEQEN  195 (527)
T ss_pred             HHHHHHHHhC---CCCCEEEEEEeCChhhCchhHHHHHH-HHhcCCCCHHHHHHHHHHHHHHcC
Confidence            4668888874   33445666677778888888999995 499999999999988888776543

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.55  E-value=1.3e-14  Score=159.47  Aligned_cols=163  Identities=18%  Similarity=0.212  Sum_probs=118.6

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------  276 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~---------  276 (496)
                      +.+++++.+|+||+|++++++.|...+...           ..++.+||+||+|+|||++|+++|+.++..         
T Consensus         6 l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~   74 (576)
T PRK14965          6 LARKYRPQTFSDLTGQEHVSRTLQNAIDTG-----------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCN   74 (576)
T ss_pred             HHHHhCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCC
Confidence            456788899999999999999999987542           123568999999999999999999998542         


Q ss_pred             ---------------eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975          277 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL  337 (496)
Q Consensus       277 ---------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i  337 (496)
                                     ++++++.+      ...-..++.+.+.+..    ....|++|||+|.|..             ..
T Consensus        75 ~c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-------------~a  135 (576)
T PRK14965         75 VCPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-------------NA  135 (576)
T ss_pred             ccHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-------------HH
Confidence                           22222211      1122345666655542    2235999999998842             23


Q ss_pred             hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975          338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG  402 (496)
Q Consensus       338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~  402 (496)
                      .+.|+..|+.   .+..+++|.+|+.++.+.+.+++|+.. +.|..++.++....++.++...+.
T Consensus       136 ~naLLk~LEe---pp~~~~fIl~t~~~~kl~~tI~SRc~~-~~f~~l~~~~i~~~L~~i~~~egi  196 (576)
T PRK14965        136 FNALLKTLEE---PPPHVKFIFATTEPHKVPITILSRCQR-FDFRRIPLQKIVDRLRYIADQEGI  196 (576)
T ss_pred             HHHHHHHHHc---CCCCeEEEEEeCChhhhhHHHHHhhhh-hhcCCCCHHHHHHHHHHHHHHhCC
Confidence            4678888873   344566777778889999999999965 999999999988888887765543

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=99.55  E-value=3e-15  Score=157.81  Aligned_cols=241  Identities=22%  Similarity=0.234  Sum_probs=163.1

Q ss_pred             CCCCCCcHHHHHHHHHHhhhhhh--C------CCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCC
Q 010975          186 LLPNFDSAETRALAESLCRDIIR--G------SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGP  257 (496)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GP  257 (496)
                      +.|+|+...+...++..+.....  +      .......+++|.....+++.+.+...-          .....|||+|+
T Consensus       103 l~KP~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S~am~~l~~~i~kvA----------~s~a~VLI~GE  172 (464)
T COG2204         103 LEKPFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGESPAMQQLRRLIAKVA----------PSDASVLITGE  172 (464)
T ss_pred             eeCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhccccccCCceecCHHHHHHHHHHHHHh----------CCCCCEEEECC
Confidence            34667766666666655443221  1      112356789999999999998774432          33467999999


Q ss_pred             CCChhHHHHHHHHhhh---cceeeeeeccccc---------ccccCChHHHHHH---HHHHhhhcCCcceehhhHHHHHh
Q 010975          258 PGTGKTMLAKAVATEC---KTTFFNISASSVV---------SKWRGDSEKLIKV---LFELARHHAPSTIFLDEIDAIIS  322 (496)
Q Consensus       258 pGtGKT~LAralA~~l---~~~~i~v~~s~l~---------~~~~G~~e~~l~~---lf~~a~~~~p~ILfIDEID~L~~  322 (496)
                      +||||..+||+|++..   +.||+.+||..+.         +...|.+.+....   .|+.|.+   ++||||||..|..
T Consensus       173 SGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~mpl  249 (464)
T COG2204         173 SGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEMPL  249 (464)
T ss_pred             CCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccCCH
Confidence            9999999999999988   5699999996543         3333444333332   5565555   8999999988754


Q ss_pred             hhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc--cc-----ccHHHHHHhhhhhcccCCCHHHHHH----
Q 010975          323 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP--WE-----LDAAMLRRLEKRILVPLPDTEARRA----  391 (496)
Q Consensus       323 ~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p--~~-----Ld~aL~rRf~~~I~~~~P~~eeR~~----  391 (496)
                      ..+     ....+.+++.-+..+.+.....-.|.||++||..  +.     +-+.|.-|+.. +.+..|...||.+    
T Consensus       250 ~~Q-----~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV-~~i~iPpLRER~EDIp~  323 (464)
T COG2204         250 ELQ-----VKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNV-VPLRLPPLRERKEDIPL  323 (464)
T ss_pred             HHH-----HHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhcc-ceecCCcccccchhHHH
Confidence            422     2233444444444444444445578999999987  22     44555568866 8999999999987    


Q ss_pred             HHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCC
Q 010975          392 MFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDD  452 (496)
Q Consensus       392 Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~  452 (496)
                      ++++++.+....       ......++++..+..+.++.|.+++|++.+.++...-.+..+
T Consensus       324 L~~hfl~~~~~~-------~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~~~~  377 (464)
T COG2204         324 LAEHFLKRFAAE-------LGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILSEGP  377 (464)
T ss_pred             HHHHHHHHHHHH-------cCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCcc
Confidence            555555443322       113356788899999999999999999999888766554443

>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]

Probab=99.55  E-value=9.2e-16  Score=161.81  Aligned_cols=232  Identities=24%  Similarity=0.300  Sum_probs=162.1

Q ss_pred             CCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccc
Q 010975          209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV  285 (496)
Q Consensus       209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l  285 (496)
                      .....+|++|+|......++.+.....-          ..+..|||.|.+||||..+|++|++.+   +.||+.+||..+
T Consensus       238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A----------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi  307 (560)
T COG3829         238 LKAKYTFDDIIGESPAMLRVLELAKRIA----------KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI  307 (560)
T ss_pred             cccccchhhhccCCHHHHHHHHHHHhhc----------CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence            4556789999999999988888764432          334689999999999999999999988   789999999654


Q ss_pred             ---------cccccCChHHHHH----HHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccC
Q 010975          286 ---------VSKWRGDSEKLIK----VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD  352 (496)
Q Consensus       286 ---------~~~~~G~~e~~l~----~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~  352 (496)
                               ++-..|++.+..+    .+|+.|..   +.||||||..|...     ......+.+++.-+..+.+.....
T Consensus       308 Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgempl~-----LQaKLLRVLQEkei~rvG~t~~~~  379 (560)
T COG3829         308 PETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMPLP-----LQAKLLRVLQEKEIERVGGTKPIP  379 (560)
T ss_pred             CHHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccCCHH-----HHHHHHHHHhhceEEecCCCCcee
Confidence                     3333444444433    36777766   79999999887433     223334445555555556666667


Q ss_pred             cEEEEEeccCCc--ccccHHHHH-----HhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccCCcCC
Q 010975          353 ELVFVLAATNLP--WELDAAMLR-----RLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYSGS  421 (496)
Q Consensus       353 ~~viVIatTn~p--~~Ld~aL~r-----Rf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g~s~~  421 (496)
                      -.|.||||||..  +.+...-+|     |... +.+..|...+|.+    +...++.+....       ..+...|.++.
T Consensus       380 vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV-~~i~iPPLReR~eDI~~L~~~Fl~k~s~~-------~~~~v~~ls~~  451 (560)
T COG3829         380 VDVRIIAATNRNLEKMIAEGTFREDLYYRLNV-IPITIPPLRERKEDIPLLAEYFLDKFSRR-------YGRNVKGLSPD  451 (560)
T ss_pred             eEEEEEeccCcCHHHHHhcCcchhhheeeece-eeecCCCcccCcchHHHHHHHHHHHHHHH-------cCCCcccCCHH
Confidence            789999999986  223322222     7765 8888898888876    334444432222       23446678889


Q ss_pred             chhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHH-HHhhc
Q 010975          422 DIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVE-IALKN  471 (496)
Q Consensus       422 dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~-~Al~~  471 (496)
                      .+..+.+..|.+++|++.+.+|+..-+...+..     |+.+|+- .++..
T Consensus       452 a~~~L~~y~WPGNVRELeNviER~v~~~~~~~~-----I~~~~lp~~~l~~  497 (560)
T COG3829         452 ALALLLRYDWPGNVRELENVIERAVNLVESDGL-----IDADDLPAFALEE  497 (560)
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHHhccCCcce-----eehhhcchhhhcc
Confidence            999999999999999999999877654444443     6666665 44444

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=99.55  E-value=1.9e-14  Score=156.44  Aligned_cols=163  Identities=17%  Similarity=0.225  Sum_probs=117.6

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc---------
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------  275 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~---------  275 (496)
                      .+.+++++.+|++++|++.+++.|...+...           ..++++||+||||+|||++|+++|+.+.+         
T Consensus         5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~-----------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~C   73 (605)
T PRK05896          5 TFYRKYRPHNFKQIIGQELIKKILVNAILNN-----------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCC   73 (605)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence            4667889999999999999999999877432           12367999999999999999999998843         


Q ss_pred             ---------------eeeeeecccccccccCChHHHHHHHHHHhhhc----CCcceehhhHHHHHhhhcCCcchhHHhhh
Q 010975          276 ---------------TFFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRR  336 (496)
Q Consensus       276 ---------------~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~----~p~ILfIDEID~L~~~r~~~~~~~~~~~~  336 (496)
                                     .++.++++..      ..-..++.+.+.+...    ...|++|||+|.|...             
T Consensus        74 g~C~sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~-------------  134 (605)
T PRK05896         74 NSCSVCESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS-------------  134 (605)
T ss_pred             cccHHHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHH-------------
Confidence                           1222222110      1223455555544432    2359999999988322             


Q ss_pred             hhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975          337 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       337 i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                      ..+.|+..++.   .+..+++|.+|+.+..+.+++++|+.. +.+..++.++....++..+...+
T Consensus       135 A~NaLLKtLEE---Pp~~tvfIL~Tt~~~KLl~TI~SRcq~-ieF~~Ls~~eL~~~L~~il~keg  195 (605)
T PRK05896        135 AWNALLKTLEE---PPKHVVFIFATTEFQKIPLTIISRCQR-YNFKKLNNSELQELLKSIAKKEK  195 (605)
T ss_pred             HHHHHHHHHHh---CCCcEEEEEECCChHhhhHHHHhhhhh-cccCCCCHHHHHHHHHHHHHHcC
Confidence            23568887773   333455666777888999999999965 99999999999998888776543

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=99.54  E-value=2.8e-14  Score=157.46  Aligned_cols=225  Identities=21%  Similarity=0.211  Sum_probs=144.4

Q ss_pred             CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----------cceeeee
Q 010975          211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNI  280 (496)
Q Consensus       211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----------~~~~i~v  280 (496)
                      +...-+.|.|.++..++|..++...+...       .+.+.++|+|+||||||++++.+.+++          ...+++|
T Consensus       750 ~DYVPD~LPhREeEIeeLasfL~paIkgs-------gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYI  822 (1164)
T PTZ00112        750 LDVVPKYLPCREKEIKEVHGFLESGIKQS-------GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEI  822 (1164)
T ss_pred             cccCCCcCCChHHHHHHHHHHHHHHHhcC-------CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEE
Confidence            33344689999999999999886554321       122345799999999999999998876          2567899


Q ss_pred             ecccccccc----------------cC-ChHHHHHHHHHHhhh--cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhh
Q 010975          281 SASSVVSKW----------------RG-DSEKLIKVLFELARH--HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTEL  341 (496)
Q Consensus       281 ~~s~l~~~~----------------~G-~~e~~l~~lf~~a~~--~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~L  341 (496)
                      +|..+...+                .| .....+..+|.....  ....||+|||||.|....          .   ..|
T Consensus       823 NCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~----------Q---DVL  889 (1164)
T PTZ00112        823 NGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT----------Q---KVL  889 (1164)
T ss_pred             eCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH----------H---HHH
Confidence            985543221                01 123455566665422  234699999999996431          1   223


Q ss_pred             hhhccCccccCcEEEEEeccCCc---ccccHHHHHHhhh-hhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccC
Q 010975          342 LIQMDGLTQSDELVFVLAATNLP---WELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG  417 (496)
Q Consensus       342 l~~ld~~~~~~~~viVIatTn~p---~~Ld~aL~rRf~~-~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g  417 (496)
                      +..++........+.||+++|..   +.+++.+++||.. .+.|++|+.+++.+|++..+....   .           -
T Consensus       890 YnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~---g-----------V  955 (1164)
T PTZ00112        890 FTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCK---E-----------I  955 (1164)
T ss_pred             HHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCC---C-----------C
Confidence            33333222345568889999864   5678889998864 488999999999999999886421   0           1


Q ss_pred             CcCCchhhcchhhh--ccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCC
Q 010975          418 YSGSDIRLVSKEAA--MQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS  475 (496)
Q Consensus       418 ~s~~dI~~l~~~A~--~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps  475 (496)
                      +....|..+++.++  .+.+|+++..++...++..      ...|+.+|+.+|+.++..+
T Consensus       956 LdDdAIELIArkVAq~SGDARKALDILRrAgEike------gskVT~eHVrkAleeiE~s 1009 (1164)
T PTZ00112        956 IDHTAIQLCARKVANVSGDIRKALQICRKAFENKR------GQKIVPRDITEATNQLFDS 1009 (1164)
T ss_pred             CCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcC------CCccCHHHHHHHHHHHHhh
Confidence            22222333333222  3566777766665544321      1258999999998876433

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=99.53  E-value=1.3e-14  Score=152.77  Aligned_cols=132  Identities=26%  Similarity=0.381  Sum_probs=89.4

Q ss_pred             hhhcchHHHHHHhhhhcccccCcccc----ccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc-cccC
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYF----TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG  291 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~----~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~-~~~G  291 (496)
                      .|+|++++|+.|...+..+.+.-...    .....+..++||+||||||||++|+++|..++.+|+.++++.+.. .|+|
T Consensus        72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG  151 (412)
T PRK05342         72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG  151 (412)
T ss_pred             HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence            38999999999987764332211110    011224478999999999999999999999999999999988764 5777


Q ss_pred             ChH-HHHHHHHHHh----hhcCCcceehhhHHHHHhhhcCCcchhHHh-hhhhhhhhhhccCc
Q 010975          292 DSE-KLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEAS-RRLKTELLIQMDGL  348 (496)
Q Consensus       292 ~~e-~~l~~lf~~a----~~~~p~ILfIDEID~L~~~r~~~~~~~~~~-~~i~~~Ll~~ld~~  348 (496)
                      ... ..+..++..+    ....++||||||||.+...........+.+ ..++..||..|++.
T Consensus       152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~  214 (412)
T PRK05342        152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGT  214 (412)
T ss_pred             chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcC
Confidence            643 3344444432    234568999999999986632211111111 24677888888753

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=99.53  E-value=3.2e-14  Score=147.04  Aligned_cols=163  Identities=21%  Similarity=0.268  Sum_probs=117.3

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------  276 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~---------  276 (496)
                      +.+++++.+|++++|++++++.|.+.+...           ..++.+||+||||+|||++|+++++.+...         
T Consensus         4 ~~~~~rp~~~~~iig~~~~~~~l~~~~~~~-----------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~   72 (355)
T TIGR02397         4 LARKYRPQTFEDVIGQEHIVQTLKNAIKNG-----------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCN   72 (355)
T ss_pred             HHHHhCCCcHhhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence            456778889999999999999999887532           123578999999999999999999987432         


Q ss_pred             ---------------eeeeecccccccccCChHHHHHHHHHHhhhc----CCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975          277 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRL  337 (496)
Q Consensus       277 ---------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~----~p~ILfIDEID~L~~~r~~~~~~~~~~~~i  337 (496)
                                     ++.++...      ......++.+++.+...    ...|++|||+|.+...             .
T Consensus        73 ~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~-------------~  133 (355)
T TIGR02397        73 ECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKS-------------A  133 (355)
T ss_pred             CCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHH-------------H
Confidence                           22222211      11233456666665432    2359999999987321             2


Q ss_pred             hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975          338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG  402 (496)
Q Consensus       338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~  402 (496)
                      .+.|+..++.   .+..+++|.+|++++.+.+++++|+.. +.++.|+.++...+++.++...+.
T Consensus       134 ~~~Ll~~le~---~~~~~~lIl~~~~~~~l~~~l~sr~~~-~~~~~~~~~~l~~~l~~~~~~~g~  194 (355)
T TIGR02397       134 FNALLKTLEE---PPEHVVFILATTEPHKIPATILSRCQR-FDFKRIPLEDIVERLKKILDKEGI  194 (355)
T ss_pred             HHHHHHHHhC---CccceeEEEEeCCHHHHHHHHHhheeE-EEcCCCCHHHHHHHHHHHHHHcCC
Confidence            3557777763   334466667778888888999999954 899999999999999988866543

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=99.53  E-value=3e-14  Score=157.58  Aligned_cols=170  Identities=18%  Similarity=0.230  Sum_probs=120.3

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeee---ee
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN---IS  281 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~---v~  281 (496)
                      -+.+++++.+|++++|++.+++.|...+...           ..++.+||+||+|+|||++|+++|+.+.+.-..   -.
T Consensus         7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p   75 (725)
T PRK07133          7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP   75 (725)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc
Confidence            3567889999999999999999999988542           123568999999999999999999988553110   01


Q ss_pred             cccc---cc---c---ccC---ChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhc
Q 010975          282 ASSV---VS---K---WRG---DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM  345 (496)
Q Consensus       282 ~s~l---~~---~---~~G---~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~l  345 (496)
                      |...   .+   .   ..+   .....++.+.+.+..    ....|++|||+|.|...             ..+.|+..|
T Consensus        76 C~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~-------------A~NALLKtL  142 (725)
T PRK07133         76 CQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS-------------AFNALLKTL  142 (725)
T ss_pred             hhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH-------------HHHHHHHHh
Confidence            1000   00   0   001   123446676666653    23459999999987422             346788888


Q ss_pred             cCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975          346 DGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG  402 (496)
Q Consensus       346 d~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~  402 (496)
                      +.   .+..+++|.+|+.++.+.+++++|+.. +.|..++.++....++..+...+.
T Consensus       143 EE---PP~~tifILaTte~~KLl~TI~SRcq~-ieF~~L~~eeI~~~L~~il~kegI  195 (725)
T PRK07133        143 EE---PPKHVIFILATTEVHKIPLTILSRVQR-FNFRRISEDEIVSRLEFILEKENI  195 (725)
T ss_pred             hc---CCCceEEEEEcCChhhhhHHHHhhcee-EEccCCCHHHHHHHHHHHHHHcCC
Confidence            73   344566666778888999999999964 999999999999988887765443

>PRK06893 DNA replication initiation factor; Validated

Probab=99.52  E-value=3.5e-14  Score=138.74  Aligned_cols=132  Identities=16%  Similarity=0.223  Sum_probs=86.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcC
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE  326 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~  326 (496)
                      ..++|+||||||||+|++++|+++   +....+++.....        .....+++...  +..+|+|||++.+.++.  
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~~--~~dlLilDDi~~~~~~~--  107 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENLE--QQDLVCLDDLQAVIGNE--  107 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhcc--cCCEEEEeChhhhcCCh--
Confidence            358999999999999999999987   3344444443211        11112333332  34799999999985431  


Q ss_pred             CcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccccc---HHHHHHhh--hhhcccCCCHHHHHHHHHhhCCCCC
Q 010975          327 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD---AAMLRRLE--KRILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       327 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld---~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                               .....++..++.....+..++|++++..|..++   +.+++|+.  ..+.++.|+.+++.+|++..+....
T Consensus       108 ---------~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~  178 (229)
T PRK06893        108 ---------EWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG  178 (229)
T ss_pred             ---------HHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence                     111234454544333444455666666676544   89999875  5688999999999999998876544


Q ss_pred             C
Q 010975          402 G  402 (496)
Q Consensus       402 ~  402 (496)
                      .
T Consensus       179 l  179 (229)
T PRK06893        179 I  179 (229)
T ss_pred             C
Confidence            3

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.52  E-value=6.6e-14  Score=145.40  Aligned_cols=170  Identities=22%  Similarity=0.251  Sum_probs=115.1

Q ss_pred             CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc---------ceeeeee
Q 010975          211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---------TTFFNIS  281 (496)
Q Consensus       211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~---------~~~i~v~  281 (496)
                      +....++++|.++.++.|...+......        ..+.+++|+||||||||++++.+++++.         ..+++++
T Consensus        10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~--------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in   81 (365)
T TIGR02928        10 PDYVPDRIVHRDEQIEELAKALRPILRG--------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN   81 (365)
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE
Confidence            3444568999999999999988543221        2235799999999999999999998763         5688888


Q ss_pred             ccccccc----------c---------cC-ChHHHHHHHHHHhhh-cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhh
Q 010975          282 ASSVVSK----------W---------RG-DSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE  340 (496)
Q Consensus       282 ~s~l~~~----------~---------~G-~~e~~l~~lf~~a~~-~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~  340 (496)
                      |....+.          .         .+ ........+++.... .++.||+|||+|.+....          ..++..
T Consensus        82 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~----------~~~L~~  151 (365)
T TIGR02928        82 CQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD----------DDLLYQ  151 (365)
T ss_pred             CCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC----------cHHHHh
Confidence            8654321          1         01 112233444444432 345799999999996221          112334


Q ss_pred             hhhhccCccccCcEEEEEeccCCcc---cccHHHHHHhh-hhhcccCCCHHHHHHHHHhhCC
Q 010975          341 LLIQMDGLTQSDELVFVLAATNLPW---ELDAAMLRRLE-KRILVPLPDTEARRAMFESLLP  398 (496)
Q Consensus       341 Ll~~ld~~~~~~~~viVIatTn~p~---~Ld~aL~rRf~-~~I~~~~P~~eeR~~Il~~~l~  398 (496)
                      |+...+........+.+|+++|.++   .+++.+.+||. ..+.+++++.++..+|++..+.
T Consensus       152 l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~  213 (365)
T TIGR02928       152 LSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE  213 (365)
T ss_pred             HhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence            4443221222335678888888885   57888888885 5689999999999999998875

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=99.52  E-value=4.2e-14  Score=154.49  Aligned_cols=162  Identities=18%  Similarity=0.190  Sum_probs=115.7

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------  276 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~---------  276 (496)
                      +.+++++.+|+|++|++.+++.|...+....           .++.+||+||||+|||++|+++|+.++..         
T Consensus         6 l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~-----------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~   74 (563)
T PRK06647          6 TATKRRPRDFNSLEGQDFVVETLKHSIESNK-----------IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG   74 (563)
T ss_pred             HHHHhCCCCHHHccCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc
Confidence            4567889999999999999999999885421           23569999999999999999999998642         


Q ss_pred             ---------------eeeeecccccccccCChHHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975          277 ---------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRL  337 (496)
Q Consensus       277 ---------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i  337 (496)
                                     ++.+++..      ...-..++.+.+.+.    .....|++|||+|.|..             ..
T Consensus        75 ~C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-------------~a  135 (563)
T PRK06647         75 ECSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-------------SA  135 (563)
T ss_pred             cchHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-------------HH
Confidence                           11111110      011234455544333    23346999999998832             23


Q ss_pred             hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975          338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                      .+.|+..++.   .+..+++|.+|+.+..+.+++++|+.. +.|..++.++...+++..+....
T Consensus       136 ~naLLK~LEe---pp~~~vfI~~tte~~kL~~tI~SRc~~-~~f~~l~~~el~~~L~~i~~~eg  195 (563)
T PRK06647        136 FNALLKTIEE---PPPYIVFIFATTEVHKLPATIKSRCQH-FNFRLLSLEKIYNMLKKVCLEDQ  195 (563)
T ss_pred             HHHHHHhhcc---CCCCEEEEEecCChHHhHHHHHHhceE-EEecCCCHHHHHHHHHHHHHHcC
Confidence            4667777773   334456666777788899999999975 89999999999988888775543

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=99.51  E-value=2.2e-14  Score=153.56  Aligned_cols=183  Identities=16%  Similarity=0.305  Sum_probs=114.2

Q ss_pred             CCCccch-hhcchH--HHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeec
Q 010975          211 PDVKWES-IKGLEN--AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA  282 (496)
Q Consensus       211 ~~~~l~d-liG~e~--vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~  282 (496)
                      +..+|++ ++|...  +...+.++...+-          ...+.++|+||||+|||+|++++++++     +..++++++
T Consensus       117 ~~~tfd~fv~g~~n~~a~~~~~~~~~~~~----------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~  186 (450)
T PRK00149        117 PKYTFDNFVVGKSNRLAHAAALAVAENPG----------KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS  186 (450)
T ss_pred             CCCcccccccCCCcHHHHHHHHHHHhCcC----------ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence            4556887 445332  4444444433221          123579999999999999999999988     566888888


Q ss_pred             ccccccccCChHH-HHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEecc
Q 010975          283 SSVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT  361 (496)
Q Consensus       283 s~l~~~~~G~~e~-~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatT  361 (496)
                      .++...+...... ....+.+..+  .+.+|+|||+|.+.++..           ....++..++.....+. .+|+++.
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~~-----------~~~~l~~~~n~l~~~~~-~iiits~  252 (450)
T PRK00149        187 EKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGKER-----------TQEEFFHTFNALHEAGK-QIVLTSD  252 (450)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCCHH-----------HHHHHHHHHHHHHHCCC-cEEEECC
Confidence            8776554332221 1112222222  457999999999854311           12334444444333333 3455555


Q ss_pred             CCccc---ccHHHHHHhh--hhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccC
Q 010975          362 NLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEG  417 (496)
Q Consensus       362 n~p~~---Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g  417 (496)
                      ..|..   +++++++||.  ..+.+..|+.++|..|++..+...... .+..++.+++...|
T Consensus       253 ~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~  314 (450)
T PRK00149        253 RPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS  314 (450)
T ss_pred             CCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC
Confidence            56544   7789999996  468899999999999999998764433 22224445555443

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=99.51  E-value=2.7e-14  Score=152.54  Aligned_cols=173  Identities=18%  Similarity=0.220  Sum_probs=129.3

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhccee--e----
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF--F----  278 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~--i----  278 (496)
                      .+.+++++.+|+|++|++.+.+.|...+....           ..++.||.||.|||||++||.+|+.+++.-  .    
T Consensus         5 ~L~rKyRP~~F~evvGQe~v~~~L~nal~~~r-----------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC   73 (515)
T COG2812           5 VLARKYRPKTFDDVVGQEHVVKTLSNALENGR-----------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPC   73 (515)
T ss_pred             HHHHHhCcccHHHhcccHHHHHHHHHHHHhCc-----------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcc
Confidence            45678899999999999999999999886533           235799999999999999999999996542  1    


Q ss_pred             -------eeecccccc--cccC---ChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhh
Q 010975          279 -------NISASSVVS--KWRG---DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL  342 (496)
Q Consensus       279 -------~v~~s~l~~--~~~G---~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll  342 (496)
                             .++.+...+  ++.+   ..-..+|.+.+++..    .++.|++|||+|.|.             ....++||
T Consensus        74 ~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-------------~~afNALL  140 (515)
T COG2812          74 GKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-------------KQAFNALL  140 (515)
T ss_pred             hhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-------------HHHHHHHh
Confidence                   111110100  0111   123445666666543    345699999998874             44668888


Q ss_pred             hhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCC
Q 010975          343 IQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES  405 (496)
Q Consensus       343 ~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~  405 (496)
                      +.++   ..+..|.+|.+|..+..++..+++|+.+ +.|..-+.++....+..++.+.....+
T Consensus       141 KTLE---EPP~hV~FIlATTe~~Kip~TIlSRcq~-f~fkri~~~~I~~~L~~i~~~E~I~~e  199 (515)
T COG2812         141 KTLE---EPPSHVKFILATTEPQKIPNTILSRCQR-FDFKRLDLEEIAKHLAAILDKEGINIE  199 (515)
T ss_pred             cccc---cCccCeEEEEecCCcCcCchhhhhcccc-ccccCCCHHHHHHHHHHHHHhcCCccC
Confidence            8887   5666788888999999999999999976 899899999999999999887766533

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=99.50  E-value=7.9e-14  Score=141.71  Aligned_cols=167  Identities=23%  Similarity=0.192  Sum_probs=111.3

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc-----ceeee
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFN  279 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~-----~~~i~  279 (496)
                      .|.+++.+.+|+|++|.+++++.+...+....            ..+++|+||||||||++++++++++.     ..++.
T Consensus         6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~------------~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~   73 (319)
T PRK00440          6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKEKN------------MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE   73 (319)
T ss_pred             ccchhhCCCcHHHhcCcHHHHHHHHHHHhCCC------------CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE
Confidence            36778888999999999999999998874321            13689999999999999999999873     23445


Q ss_pred             eecccccccccCChHHHHHHHHHHh-hh-cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEE
Q 010975          280 ISASSVVSKWRGDSEKLIKVLFELA-RH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV  357 (496)
Q Consensus       280 v~~s~l~~~~~G~~e~~l~~lf~~a-~~-~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV  357 (496)
                      +++++..+.  ......+....... .. ..+.+|+|||+|.+...             ..+.|+..++....   ...+
T Consensus        74 ~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-------------~~~~L~~~le~~~~---~~~l  135 (319)
T PRK00440         74 LNASDERGI--DVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD-------------AQQALRRTMEMYSQ---NTRF  135 (319)
T ss_pred             eccccccch--HHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH-------------HHHHHHHHHhcCCC---CCeE
Confidence            544332110  00111222221111 01 22459999999887422             12345555553322   2345


Q ss_pred             EeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975          358 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG  402 (496)
Q Consensus       358 IatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~  402 (496)
                      |.++|.+..+.+++.+|+.. +.++.++.++...+++.++.....
T Consensus       136 Il~~~~~~~l~~~l~sr~~~-~~~~~l~~~ei~~~l~~~~~~~~~  179 (319)
T PRK00440        136 ILSCNYSSKIIDPIQSRCAV-FRFSPLKKEAVAERLRYIAENEGI  179 (319)
T ss_pred             EEEeCCccccchhHHHHhhe-eeeCCCCHHHHHHHHHHHHHHcCC
Confidence            55677777788889999975 899999999999999988865543

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=99.50  E-value=2.8e-14  Score=148.56  Aligned_cols=245  Identities=25%  Similarity=0.350  Sum_probs=160.3

Q ss_pred             hhhcchHHHHHHhhhhcccccCccccccc--cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc-cccC-C
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG-D  292 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~--~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~-~~~G-~  292 (496)
                      .|+|++++|+.+...+....+...+....  -..++++||+||||||||++|+++|+.++.+|+.++++.+.. .|+| .
T Consensus        16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d   95 (443)
T PRK05201         16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD   95 (443)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence            49999999999998885532222221111  112478999999999999999999999999999999988775 6777 4


Q ss_pred             hHHHHHHHHHHhh-------------------------------------------------------------------
Q 010975          293 SEKLIKVLFELAR-------------------------------------------------------------------  305 (496)
Q Consensus       293 ~e~~l~~lf~~a~-------------------------------------------------------------------  305 (496)
                      .+..++.+++.|.                                                                   
T Consensus        96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei  175 (443)
T PRK05201         96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI  175 (443)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence            4555666555550                                                                   


Q ss_pred             -----------------------------------------------------------------------hcCCcceeh
Q 010975          306 -----------------------------------------------------------------------HHAPSTIFL  314 (496)
Q Consensus       306 -----------------------------------------------------------------------~~~p~ILfI  314 (496)
                                                                                             ..+.+|+||
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi  255 (443)
T PRK05201        176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI  255 (443)
T ss_pred             EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence                                                                                   013469999


Q ss_pred             hhHHHHHhhhcCCcchhHHhh-hhhhhhhhhccCccc-------cCcEEEEEecc----CCcccccHHHHHHhhhhhccc
Q 010975          315 DEIDAIISQRGEARSEHEASR-RLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLEKRILVP  382 (496)
Q Consensus       315 DEID~L~~~r~~~~~~~~~~~-~i~~~Ll~~ld~~~~-------~~~~viVIatT----n~p~~Ld~aL~rRf~~~I~~~  382 (496)
                      ||||+++...+..  ..+++. -++..||..++|-..       ...++++||+-    ..|.++-|.|..||..++.+.
T Consensus       256 DEiDKIa~~~~~~--~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~  333 (443)
T PRK05201        256 DEIDKIAARGGSS--GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELD  333 (443)
T ss_pred             EcchhhcccCCCC--CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECC
Confidence            9999998764321  223333 478889999987432       23457777764    456667889999999999999


Q ss_pred             CCCHHHHHHHHHh----hCCCCCC---CCCCCcceeeecccCCcCCchhhcchhhhcc-------HHHHHHHHhhcc---
Q 010975          383 LPDTEARRAMFES----LLPSQTG---EESLPYDLLVERTEGYSGSDIRLVSKEAAMQ-------PLRRLMVLLEGR---  445 (496)
Q Consensus       383 ~P~~eeR~~Il~~----~l~~~~~---~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~-------a~rR~~~~le~~---  445 (496)
                      .++.++..+||..    +++++..   ..++++.        |+...++.+++.|...       -.|++...+|..   
T Consensus       334 ~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~--------Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d  405 (443)
T PRK05201        334 ALTEEDFVRILTEPKASLIKQYQALLATEGVTLE--------FTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLED  405 (443)
T ss_pred             CCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEE--------EcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence            9999999998843    2222211   1122221        5666777777777642       235554444432   


Q ss_pred             -ccCCCCCCCCCCCCCCchhHHHHhhcC
Q 010975          446 -QEVAPDDELPQIGPIRPEDVEIALKNT  472 (496)
Q Consensus       446 -~~i~~~~~~~~~~~It~eDf~~Al~~~  472 (496)
                       ....+... .....|+.+-+...+..+
T Consensus       406 ~~Fe~p~~~-~~~v~I~~~~V~~~l~~l  432 (443)
T PRK05201        406 ISFEAPDMS-GETVTIDAAYVDEKLGDL  432 (443)
T ss_pred             HhccCCCCC-CCEEEECHHHHHHHHHHH
Confidence             22233322 122446777666555543

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=99.49  E-value=1e-13  Score=148.05  Aligned_cols=162  Identities=20%  Similarity=0.214  Sum_probs=114.1

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------  276 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~---------  276 (496)
                      +.+++++.+|+|++|++.+++.|...+...           ..++++||+||||+|||++|+++|+.+...         
T Consensus         7 ~~~kyRP~~~~diiGq~~~v~~L~~~i~~~-----------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c   75 (451)
T PRK06305          7 SSRKYRPQTFSEILGQDAVVAVLKNALRFN-----------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPC   75 (451)
T ss_pred             HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCC
Confidence            345678889999999999999999888542           123579999999999999999999988432         


Q ss_pred             ----------------eeeeecccccccccCChHHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCcchhHHhhh
Q 010975          277 ----------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRR  336 (496)
Q Consensus       277 ----------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~  336 (496)
                                      ++.+++..    ..  .-..++.+.+...    .....|++|||+|.+...             
T Consensus        76 ~~c~~C~~i~~~~~~d~~~i~g~~----~~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~-------------  136 (451)
T PRK06305         76 NQCASCKEISSGTSLDVLEIDGAS----HR--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE-------------  136 (451)
T ss_pred             cccHHHHHHhcCCCCceEEeeccc----cC--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH-------------
Confidence                            22222111    01  1123333333222    134579999999988422             


Q ss_pred             hhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975          337 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       337 i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                      ..+.|+..++.   .+..+++|.+|+.+..+.+++++|+.. +.+..++.++....++..+...+
T Consensus       137 ~~n~LLk~lEe---p~~~~~~Il~t~~~~kl~~tI~sRc~~-v~f~~l~~~el~~~L~~~~~~eg  197 (451)
T PRK06305        137 AFNSLLKTLEE---PPQHVKFFLATTEIHKIPGTILSRCQK-MHLKRIPEETIIDKLALIAKQEG  197 (451)
T ss_pred             HHHHHHHHhhc---CCCCceEEEEeCChHhcchHHHHhceE-EeCCCCCHHHHHHHHHHHHHHcC
Confidence            24567888874   233456666778888899999999965 99999999999988888776543

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=99.49  E-value=9.9e-14  Score=144.38  Aligned_cols=245  Identities=26%  Similarity=0.333  Sum_probs=159.8

Q ss_pred             hhhcchHHHHHHhhhhcccccCccccccc--cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc-cccC-C
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG-D  292 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~--~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~-~~~G-~  292 (496)
                      -++|++++|+.+...+....++..+...+  -.+++++||+||||||||++|+++|..++.+|+.++++.+.. .|.| .
T Consensus        13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d   92 (441)
T TIGR00390        13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD   92 (441)
T ss_pred             hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence            49999999999988886543322221111  224589999999999999999999999999999999987764 6777 4


Q ss_pred             hHHHHHHHHHHh--------------------------------------------------------------------
Q 010975          293 SEKLIKVLFELA--------------------------------------------------------------------  304 (496)
Q Consensus       293 ~e~~l~~lf~~a--------------------------------------------------------------------  304 (496)
                      .+..++.+++.+                                                                    
T Consensus        93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei  172 (441)
T TIGR00390        93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI  172 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence            556666555544                                                                    


Q ss_pred             -----------------------------------------------------------------------hhcCCccee
Q 010975          305 -----------------------------------------------------------------------RHHAPSTIF  313 (496)
Q Consensus       305 -----------------------------------------------------------------------~~~~p~ILf  313 (496)
                                                                                             ...+.+|+|
T Consensus       173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf  252 (441)
T TIGR00390       173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF  252 (441)
T ss_pred             eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence                                                                                   001346999


Q ss_pred             hhhHHHHHhhhcCCcchhHHhh-hhhhhhhhhccCccc-------cCcEEEEEecc----CCcccccHHHHHHhhhhhcc
Q 010975          314 LDEIDAIISQRGEARSEHEASR-RLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLEKRILV  381 (496)
Q Consensus       314 IDEID~L~~~r~~~~~~~~~~~-~i~~~Ll~~ld~~~~-------~~~~viVIatT----n~p~~Ld~aL~rRf~~~I~~  381 (496)
                      |||||+++.....  ...+++. -++..||..++|-..       ...++++||+.    ..|.++-|.|.-||..++.+
T Consensus       253 iDEiDKIa~~~~~--~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L  330 (441)
T TIGR00390       253 IDEIDKIAKKGES--SGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVEL  330 (441)
T ss_pred             EEchhhhcccCCC--CCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEEC
Confidence            9999999876421  1223333 478889999987432       23457777765    35666788999999999999


Q ss_pred             cCCCHHHHHHHHHh----hCCCCCC---CCCCCcceeeecccCCcCCchhhcchhhhc-------cHHHHHHHHhhcc--
Q 010975          382 PLPDTEARRAMFES----LLPSQTG---EESLPYDLLVERTEGYSGSDIRLVSKEAAM-------QPLRRLMVLLEGR--  445 (496)
Q Consensus       382 ~~P~~eeR~~Il~~----~l~~~~~---~~~~~l~~la~~t~g~s~~dI~~l~~~A~~-------~a~rR~~~~le~~--  445 (496)
                      ..++.++..+||..    +++++..   ..++++.        |+...++.+++.|..       .-+|++...++..  
T Consensus       331 ~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~--------Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~  402 (441)
T TIGR00390       331 QALTTDDFERILTEPKNSLIKQYKALMKTEGVNIE--------FSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLE  402 (441)
T ss_pred             CCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEE--------EeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence            99999999988742    2221110   1122221        555677777777764       1234544444322  


Q ss_pred             --ccCCCCCCCCCCCCCCchhHHHHhhcC
Q 010975          446 --QEVAPDDELPQIGPIRPEDVEIALKNT  472 (496)
Q Consensus       446 --~~i~~~~~~~~~~~It~eDf~~Al~~~  472 (496)
                        ....+... .....|+.+.+...+..+
T Consensus       403 d~~fe~p~~~-~~~v~I~~~~V~~~l~~~  430 (441)
T TIGR00390       403 DISFEAPDLS-GQNITIDADYVSKKLGAL  430 (441)
T ss_pred             HHHhcCCCCC-CCEEEECHHHHHhHHHHH
Confidence              22333322 223457777776666554

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK08084 DNA replication initiation factor; Provisional

Probab=99.49  E-value=1.3e-13  Score=135.16  Aligned_cols=157  Identities=14%  Similarity=0.161  Sum_probs=96.5

Q ss_pred             CCCccchhh-c-chHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc---ceeeeeecccc
Q 010975          211 PDVKWESIK-G-LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSV  285 (496)
Q Consensus       211 ~~~~l~dli-G-~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~s~l  285 (496)
                      +..+|++.+ | ...+...+.+....+            ...+++|+||||||||+|++++++++.   ..+.+++....
T Consensus        17 ~~~~fd~f~~~~n~~a~~~l~~~~~~~------------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~   84 (235)
T PRK08084         17 DDETFASFYPGDNDSLLAALQNALRQE------------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR   84 (235)
T ss_pred             CcCCccccccCccHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence            445577755 4 455666666554221            125799999999999999999999774   34555554432


Q ss_pred             cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc
Q 010975          286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW  365 (496)
Q Consensus       286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~  365 (496)
                      ..        ....+.+....  ..+|+|||++.+.++.           .....|+..++.....+...+++++++.|.
T Consensus        85 ~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~-----------~~~~~lf~l~n~~~e~g~~~li~ts~~~p~  143 (235)
T PRK08084         85 AW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE-----------LWEMAIFDLYNRILESGRTRLLITGDRPPR  143 (235)
T ss_pred             hh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH-----------HHHHHHHHHHHHHHHcCCCeEEEeCCCChH
Confidence            11        11122222222  2589999999985431           111223333332222333234555666665


Q ss_pred             c---ccHHHHHHhh--hhhcccCCCHHHHHHHHHhhCCCC
Q 010975          366 E---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQ  400 (496)
Q Consensus       366 ~---Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~~~  400 (496)
                      .   +.+.|++|+.  .++.+..|+.+++.++++..+...
T Consensus       144 ~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~  183 (235)
T PRK08084        144 QLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLR  183 (235)
T ss_pred             HcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHc
Confidence            4   6799999995  668899999999999998866544

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.49  E-value=1.4e-13  Score=144.99  Aligned_cols=167  Identities=18%  Similarity=0.203  Sum_probs=111.6

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceee-------
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF-------  278 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i-------  278 (496)
                      +.+++++.+|++++|++.+++.|...+...           ..++++||+||||+|||++|+++|+.+...-.       
T Consensus         6 l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~-----------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~   74 (397)
T PRK14955          6 IARKYRPKKFADITAQEHITRTIQNSLRMG-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYL   74 (397)
T ss_pred             HHHhcCCCcHhhccChHHHHHHHHHHHHhC-----------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccc
Confidence            456778899999999999999998877532           12356999999999999999999999865210       


Q ss_pred             ---eeeccc------cc-------ccccC---ChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhh
Q 010975          279 ---NISASS------VV-------SKWRG---DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASR  335 (496)
Q Consensus       279 ---~v~~s~------l~-------~~~~G---~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~  335 (496)
                         .-.|..      +.       ..+.+   .....++.+.+.+..    ....|++|||+|.+...            
T Consensus        75 ~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~------------  142 (397)
T PRK14955         75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA------------  142 (397)
T ss_pred             ccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH------------
Confidence               001100      00       00111   112445555554432    12359999999988422            


Q ss_pred             hhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCC
Q 010975          336 RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ  400 (496)
Q Consensus       336 ~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~  400 (496)
                       ..+.|+..++.   .+...++|.+|+.+..+.+++++|+. .+.+..++.++....++..+...
T Consensus       143 -~~~~LLk~LEe---p~~~t~~Il~t~~~~kl~~tl~sR~~-~v~f~~l~~~ei~~~l~~~~~~~  202 (397)
T PRK14955        143 -AFNAFLKTLEE---PPPHAIFIFATTELHKIPATIASRCQ-RFNFKRIPLEEIQQQLQGICEAE  202 (397)
T ss_pred             -HHHHHHHHHhc---CCCCeEEEEEeCChHHhHHHHHHHHH-HhhcCCCCHHHHHHHHHHHHHHc
Confidence             23456666662   22334445555667788899999996 49999999999888888877544

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=99.48  E-value=5.2e-14  Score=136.76  Aligned_cols=166  Identities=22%  Similarity=0.285  Sum_probs=121.2

Q ss_pred             CCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccc
Q 010975          209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV  285 (496)
Q Consensus       209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l  285 (496)
                      ....+.+++++|.+..|+.|.+.....+.        ..+.+++||+|++|||||++++++..++   |.++++|...++
T Consensus        20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L   91 (249)
T PF05673_consen   20 HPDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL   91 (249)
T ss_pred             CCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence            34567799999999999999988755443        2356899999999999999999999987   788999887776


Q ss_pred             cccccCChHHHHHHHHHHhhh-cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC-ccccCcEEEEEeccCC
Q 010975          286 VSKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-LTQSDELVFVLAATNL  363 (496)
Q Consensus       286 ~~~~~G~~e~~l~~lf~~a~~-~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~-~~~~~~~viVIatTn~  363 (496)
                      .         .+..+++..+. ..+-|||+|++. +    ...       ..-...|-..||| +...+.+|+|.||+|+
T Consensus        92 ~---------~l~~l~~~l~~~~~kFIlf~DDLs-F----e~~-------d~~yk~LKs~LeGgle~~P~NvliyATSNR  150 (249)
T PF05673_consen   92 G---------DLPELLDLLRDRPYKFILFCDDLS-F----EEG-------DTEYKALKSVLEGGLEARPDNVLIYATSNR  150 (249)
T ss_pred             c---------cHHHHHHHHhcCCCCEEEEecCCC-C----CCC-------cHHHHHHHHHhcCccccCCCcEEEEEecch
Confidence            3         23344444432 233599999873 1    111       1112345555554 4577889999999996


Q ss_pred             ccccc---------------------H--HHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC
Q 010975          364 PWELD---------------------A--AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE  403 (496)
Q Consensus       364 p~~Ld---------------------~--aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~  403 (496)
                      -..++                     +  +|.+||...+.|..|+.++-.+|+++++......
T Consensus       151 RHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~  213 (249)
T PF05673_consen  151 RHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLE  213 (249)
T ss_pred             hhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            53211                     1  4566999999999999999999999999776654

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=99.48  E-value=7.1e-14  Score=135.28  Aligned_cols=204  Identities=16%  Similarity=0.198  Sum_probs=121.9

Q ss_pred             Cccchhh--cchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccc
Q 010975          213 VKWESIK--GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS  287 (496)
Q Consensus       213 ~~l~dli--G~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~  287 (496)
                      .+|++++  +.+.+.+.+.+++..            ..+.+++|+||||||||++|+++++++   +.+++.+++..+..
T Consensus        12 ~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~   79 (226)
T TIGR03420        12 PTFDNFYAGGNAELLAALRQLAAG------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ   79 (226)
T ss_pred             hhhcCcCcCCcHHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence            4466665  456677777776531            123689999999999999999999987   46788888877753


Q ss_pred             cccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccc
Q 010975          288 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL  367 (496)
Q Consensus       288 ~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~L  367 (496)
                      ..        ..++....  .+.+|+|||+|.+....           .....+...++.....+. .+|++++..+..+
T Consensus        80 ~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~-----------~~~~~L~~~l~~~~~~~~-~iIits~~~~~~~  137 (226)
T TIGR03420        80 AD--------PEVLEGLE--QADLVCLDDVEAIAGQP-----------EWQEALFHLYNRVREAGG-RLLIAGRAAPAQL  137 (226)
T ss_pred             hH--------HHHHhhcc--cCCEEEEeChhhhcCCh-----------HHHHHHHHHHHHHHHcCC-eEEEECCCChHHC
Confidence            21        22333222  23699999999884321           011233333332222222 3344444444333


Q ss_pred             --c-HHHHHHhh--hhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHh
Q 010975          368 --D-AAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL  442 (496)
Q Consensus       368 --d-~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~l  442 (496)
                        . +.+.+|+.  ..+.+++|+.+++..+++.++......              ++...+..+.+ .+.++++.+.+.+
T Consensus       138 ~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~--------------~~~~~l~~L~~-~~~gn~r~L~~~l  202 (226)
T TIGR03420       138 PLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQ--------------LPDEVADYLLR-HGSRDMGSLMALL  202 (226)
T ss_pred             CcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCC--------------CCHHHHHHHHH-hccCCHHHHHHHH
Confidence              2 78888884  678899999999999998765433211              33344444444 4666666666555


Q ss_pred             hccccCCCCCCCCCCCCCCchhHHHHh
Q 010975          443 EGRQEVAPDDELPQIGPIRPEDVEIAL  469 (496)
Q Consensus       443 e~~~~i~~~~~~~~~~~It~eDf~~Al  469 (496)
                      +.....+..    ....||.+.+.+++
T Consensus       203 ~~~~~~~~~----~~~~i~~~~~~~~~  225 (226)
T TIGR03420       203 DALDRASLA----AKRKITIPFVKEVL  225 (226)
T ss_pred             HHHHHHHHH----hCCCCCHHHHHHHh
Confidence            433321111    11346776666654

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=99.48  E-value=6.9e-14  Score=150.95  Aligned_cols=163  Identities=18%  Similarity=0.194  Sum_probs=115.7

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc----------
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----------  275 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~----------  275 (496)
                      +.+++++.+|++++|++.+++.|...+...           ..++.+||+||+|+|||++|+++|+.+..          
T Consensus         4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~g-----------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~   72 (535)
T PRK08451          4 LALKYRPKHFDELIGQESVSKTLSLALDNN-----------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCD   72 (535)
T ss_pred             HHHHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCc
Confidence            456788999999999999999999987432           12356799999999999999999998732          


Q ss_pred             --------------eeeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975          276 --------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL  337 (496)
Q Consensus       276 --------------~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i  337 (496)
                                    .++.+++++-      ..-..++.+......    ....|++|||+|.|..             ..
T Consensus        73 ~C~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-------------~A  133 (535)
T PRK08451         73 TCIQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-------------EA  133 (535)
T ss_pred             ccHHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-------------HH
Confidence                          1222222110      012445555544321    1235999999988732             33


Q ss_pred             hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975          338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG  402 (496)
Q Consensus       338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~  402 (496)
                      .+.|+..++..   +..+.+|.+|+.+..+.+++++|+. .+.|..++.++....++..+...+.
T Consensus       134 ~NALLK~LEEp---p~~t~FIL~ttd~~kL~~tI~SRc~-~~~F~~Ls~~ei~~~L~~Il~~EGi  194 (535)
T PRK08451        134 FNALLKTLEEP---PSYVKFILATTDPLKLPATILSRTQ-HFRFKQIPQNSIISHLKTILEKEGV  194 (535)
T ss_pred             HHHHHHHHhhc---CCceEEEEEECChhhCchHHHhhce-eEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            46788888743   3345566666778899999999985 5999999999999888888766543

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.48  E-value=1e-13  Score=144.50  Aligned_cols=168  Identities=15%  Similarity=0.161  Sum_probs=115.7

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeec---
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA---  282 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~---  282 (496)
                      +.+++++.+|+|++|++.+++.+...+...           ..++++|||||||+|||++|+++++.++.+.....+   
T Consensus         7 ~~~k~rP~~~~~iig~~~~~~~l~~~i~~~-----------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~   75 (367)
T PRK14970          7 SARKYRPQTFDDVVGQSHITNTLLNAIENN-----------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDF   75 (367)
T ss_pred             HHHHHCCCcHHhcCCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence            456788999999999999999999988542           123689999999999999999999988542211110   


Q ss_pred             ----ccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcE
Q 010975          283 ----SSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL  354 (496)
Q Consensus       283 ----s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~  354 (496)
                          -++ ..........++.+++.+..    ..+.|++|||+|.+...             ..+.++..++.   .+..
T Consensus        76 ~~~~~~l-~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~-------------~~~~ll~~le~---~~~~  138 (367)
T PRK14970         76 SFNIFEL-DAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA-------------AFNAFLKTLEE---PPAH  138 (367)
T ss_pred             CcceEEe-ccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH-------------HHHHHHHHHhC---CCCc
Confidence                001 00011223556666665542    23469999999987422             23556666653   2233


Q ss_pred             EEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975          355 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG  402 (496)
Q Consensus       355 viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~  402 (496)
                      .++|.+++.+..+.+++.+|+.. +.++.|+.++...++...+...+.
T Consensus       139 ~~~Il~~~~~~kl~~~l~sr~~~-v~~~~~~~~~l~~~l~~~~~~~g~  185 (367)
T PRK14970        139 AIFILATTEKHKIIPTILSRCQI-FDFKRITIKDIKEHLAGIAVKEGI  185 (367)
T ss_pred             eEEEEEeCCcccCCHHHHhccee-EecCCccHHHHHHHHHHHHHHcCC
Confidence            44555667778889999999965 899999999999888887765544

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.48  E-value=1.3e-13  Score=148.39  Aligned_cols=164  Identities=19%  Similarity=0.250  Sum_probs=114.4

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce--------
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------  276 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~--------  276 (496)
                      .+.+++++.+|++++|++.+++.|...+...           ..++.+||+||||+|||++|+.+|+.++..        
T Consensus         5 ~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc   73 (486)
T PRK14953          5 PFARKYRPKFFKEVIGQEIVVRILKNAVKLQ-----------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPC   73 (486)
T ss_pred             HHHHhhCCCcHHHccChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCC
Confidence            3567788899999999999999999888542           123468899999999999999999988531        


Q ss_pred             ----------------eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhh
Q 010975          277 ----------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRR  336 (496)
Q Consensus       277 ----------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~  336 (496)
                                      ++.++++.      ...-..++.+.+.+..    ..+.|++|||+|.+...             
T Consensus        74 ~~c~nc~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~-------------  134 (486)
T PRK14953         74 GKCENCVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE-------------  134 (486)
T ss_pred             CccHHHHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHH-------------
Confidence                            11111110      0112334555444432    23469999999987422             


Q ss_pred             hhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975          337 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG  402 (496)
Q Consensus       337 i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~  402 (496)
                      ..+.|+..++..  ... +++|.+|+.++.+.+++.+|+.. +.+..++.++...+++.++...+.
T Consensus       135 a~naLLk~LEep--p~~-~v~Il~tt~~~kl~~tI~SRc~~-i~f~~ls~~el~~~L~~i~k~egi  196 (486)
T PRK14953        135 AFNALLKTLEEP--PPR-TIFILCTTEYDKIPPTILSRCQR-FIFSKPTKEQIKEYLKRICNEEKI  196 (486)
T ss_pred             HHHHHHHHHhcC--CCC-eEEEEEECCHHHHHHHHHHhceE-EEcCCCCHHHHHHHHHHHHHHcCC
Confidence            235677777632  233 44555566778888999999965 999999999999999988876543

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=99.48  E-value=9.2e-14  Score=153.67  Aligned_cols=171  Identities=20%  Similarity=0.253  Sum_probs=111.4

Q ss_pred             hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----------
Q 010975          204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------  273 (496)
Q Consensus       204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----------  273 (496)
                      +.+....++.+|++++|++...+.+...+..+            .+.+++|+||||||||++|+++++..          
T Consensus       142 ~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~  209 (615)
T TIGR02903       142 KSAQSLLRPRAFSEIVGQERAIKALLAKVASP------------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAE  209 (615)
T ss_pred             hHHhhhcCcCcHHhceeCcHHHHHHHHHHhcC------------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccC
Confidence            44455567888999999999999887766332            23579999999999999999998765          


Q ss_pred             cceeeeeecccccc-------cccCChHH----HHHHHHHH----------hhhcCCcceehhhHHHHHhhhcCCcchhH
Q 010975          274 KTTFFNISASSVVS-------KWRGDSEK----LIKVLFEL----------ARHHAPSTIFLDEIDAIISQRGEARSEHE  332 (496)
Q Consensus       274 ~~~~i~v~~s~l~~-------~~~G~~e~----~l~~lf~~----------a~~~~p~ILfIDEID~L~~~r~~~~~~~~  332 (496)
                      +.+|+.+++..+..       .+.|....    ..+..+..          ......++|||||++.|....+       
T Consensus       210 ~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q-------  282 (615)
T TIGR02903       210 DAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQ-------  282 (615)
T ss_pred             CCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHH-------
Confidence            35789998876521       11111100    01111111          0112347999999988744321       


Q ss_pred             HhhhhhhhhhhhccCc--------------------------cccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCH
Q 010975          333 ASRRLKTELLIQMDGL--------------------------TQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDT  386 (496)
Q Consensus       333 ~~~~i~~~Ll~~ld~~--------------------------~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~  386 (496)
                            ..|+..++.-                          ......+++.+||+.++.+++++++||.. +.+++++.
T Consensus       283 ------~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~-i~~~pls~  355 (615)
T TIGR02903       283 ------NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAE-VFFEPLTP  355 (615)
T ss_pred             ------HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeE-EEeCCCCH
Confidence                  1222222110                          01122355556677888899999999975 78899999


Q ss_pred             HHHHHHHHhhCCCC
Q 010975          387 EARRAMFESLLPSQ  400 (496)
Q Consensus       387 eeR~~Il~~~l~~~  400 (496)
                      ++...|++..+...
T Consensus       356 edi~~Il~~~a~~~  369 (615)
T TIGR02903       356 EDIALIVLNAAEKI  369 (615)
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999987653

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=99.47  E-value=4.9e-14  Score=148.91  Aligned_cols=155  Identities=19%  Similarity=0.329  Sum_probs=100.1

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeecccccccccCChHH-HHHHHHHHhhhcCCcceehhhHHHHHh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDAIIS  322 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~s~l~~~~~G~~e~-~l~~lf~~a~~~~p~ILfIDEID~L~~  322 (496)
                      .+.++|+||||+|||+|++++++++     +..++++++.++...+...... ....+.+..+  .+.+|+|||+|.+.+
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~  213 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG  213 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence            3579999999999999999999987     5678888887765443322111 1112222222  247999999999854


Q ss_pred             hhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccc---ccHHHHHHhhh--hhcccCCCHHHHHHHHHhhC
Q 010975          323 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLEK--RILVPLPDTEARRAMFESLL  397 (496)
Q Consensus       323 ~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~---Ld~aL~rRf~~--~I~~~~P~~eeR~~Il~~~l  397 (496)
                      ..           .....++..++.....+. .+|++++..|..   +++.+++||..  .+.++.|+.++|..|++..+
T Consensus       214 ~~-----------~~~~~l~~~~n~~~~~~~-~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~  281 (405)
T TIGR00362       214 KE-----------RTQEEFFHTFNALHENGK-QIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA  281 (405)
T ss_pred             CH-----------HHHHHHHHHHHHHHHCCC-CEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence            31           112334444443323333 345555555643   66889999964  68999999999999999998


Q ss_pred             CCCCCCC-CCCcceeeecccC
Q 010975          398 PSQTGEE-SLPYDLLVERTEG  417 (496)
Q Consensus       398 ~~~~~~~-~~~l~~la~~t~g  417 (496)
                      ....... +..++.+++...+
T Consensus       282 ~~~~~~l~~e~l~~ia~~~~~  302 (405)
T TIGR00362       282 EEEGLELPDEVLEFIAKNIRS  302 (405)
T ss_pred             HHcCCCCCHHHHHHHHHhcCC
Confidence            7755442 2224445655543

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.47  E-value=1.3e-13  Score=144.75  Aligned_cols=168  Identities=20%  Similarity=0.250  Sum_probs=112.5

Q ss_pred             CCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeeccccc
Q 010975          212 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVV  286 (496)
Q Consensus       212 ~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~s~l~  286 (496)
                      ....+.++|.++..++|...+......        ..+.+++|+||||||||++++.+++++     +..++++++....
T Consensus        26 ~~~P~~l~~Re~e~~~l~~~l~~~~~~--------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~   97 (394)
T PRK00411         26 DYVPENLPHREEQIEELAFALRPALRG--------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR   97 (394)
T ss_pred             CCcCCCCCCHHHHHHHHHHHHHHHhCC--------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence            334567999999999998887543221        123579999999999999999999987     4678888886432


Q ss_pred             cc----------cc-------C-ChHHHHHHHHHHhhh-cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC
Q 010975          287 SK----------WR-------G-DSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG  347 (496)
Q Consensus       287 ~~----------~~-------G-~~e~~l~~lf~~a~~-~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~  347 (496)
                      +.          ..       + .....+..+.+.... ..+.||+|||+|.+.....         ...+..|+..++.
T Consensus        98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~---------~~~l~~l~~~~~~  168 (394)
T PRK00411         98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG---------NDVLYSLLRAHEE  168 (394)
T ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC---------chHHHHHHHhhhc
Confidence            21          11       1 122333444443332 3457999999999972111         1233445554443


Q ss_pred             ccccCcEEEEEeccCCc---ccccHHHHHHhh-hhhcccCCCHHHHHHHHHhhCC
Q 010975          348 LTQSDELVFVLAATNLP---WELDAAMLRRLE-KRILVPLPDTEARRAMFESLLP  398 (496)
Q Consensus       348 ~~~~~~~viVIatTn~p---~~Ld~aL~rRf~-~~I~~~~P~~eeR~~Il~~~l~  398 (496)
                      ..  ..++.+|+++|.+   +.+++.+.+||. ..+.+++++.++..+|++..+.
T Consensus       169 ~~--~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~  221 (394)
T PRK00411        169 YP--GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVE  221 (394)
T ss_pred             cC--CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHH
Confidence            32  2357777777766   347788888874 4689999999999999998874

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=99.46  E-value=2.2e-13  Score=149.58  Aligned_cols=171  Identities=17%  Similarity=0.151  Sum_probs=119.5

Q ss_pred             hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeee--
Q 010975          204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS--  281 (496)
Q Consensus       204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~--  281 (496)
                      +-+.+++.+.+|+||+|++.+++.|...+...           ..++++||+||+|+|||++|+.+|+.+++.....+  
T Consensus        12 ~~la~KyRP~~f~dliGq~~~v~~L~~~~~~g-----------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~   80 (598)
T PRK09111         12 RVLARKYRPQTFDDLIGQEAMVRTLTNAFETG-----------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGG   80 (598)
T ss_pred             hhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCC
Confidence            34566788899999999999999999987542           23467999999999999999999999865321111  


Q ss_pred             -----------cc--------cccccc--cCChHHHHHHHHHHhhhc----CCcceehhhHHHHHhhhcCCcchhHHhhh
Q 010975          282 -----------AS--------SVVSKW--RGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRR  336 (496)
Q Consensus       282 -----------~s--------~l~~~~--~G~~e~~l~~lf~~a~~~----~p~ILfIDEID~L~~~r~~~~~~~~~~~~  336 (496)
                                 |.        ++..-.  ....-..++.+++.+...    ...|++|||+|.|..             .
T Consensus        81 ~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-------------~  147 (598)
T PRK09111         81 PTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-------------A  147 (598)
T ss_pred             CccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-------------H
Confidence                       00        000000  001234566666655432    346999999998842             2


Q ss_pred             hhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975          337 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG  402 (496)
Q Consensus       337 i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~  402 (496)
                      ..+.|++.|+.   .+..+.+|.+|+.++.+.+.+++|+.. +.|..++.++....++..+.....
T Consensus       148 a~naLLKtLEe---Pp~~~~fIl~tte~~kll~tI~SRcq~-~~f~~l~~~el~~~L~~i~~kegi  209 (598)
T PRK09111        148 AFNALLKTLEE---PPPHVKFIFATTEIRKVPVTVLSRCQR-FDLRRIEADVLAAHLSRIAAKEGV  209 (598)
T ss_pred             HHHHHHHHHHh---CCCCeEEEEEeCChhhhhHHHHhheeE-EEecCCCHHHHHHHHHHHHHHcCC
Confidence            34667777763   333455666677777888899999965 999999999999999988765543

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=99.45  E-value=1.6e-13  Score=133.58  Aligned_cols=203  Identities=14%  Similarity=0.162  Sum_probs=123.5

Q ss_pred             CCCccchhh--cchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccc
Q 010975          211 PDVKWESIK--GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV  285 (496)
Q Consensus       211 ~~~~l~dli--G~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l  285 (496)
                      ++.+|++++  +.+.+...+.++...           .....+++|+||||||||+||++++++.   +.+++.+++.++
T Consensus        13 ~~~~~d~f~~~~~~~~~~~l~~~~~~-----------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~   81 (227)
T PRK08903         13 PPPTFDNFVAGENAELVARLRELAAG-----------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP   81 (227)
T ss_pred             ChhhhcccccCCcHHHHHHHHHHHhc-----------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence            345688866  345566666665431           1233689999999999999999999976   667888887665


Q ss_pred             cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc-
Q 010975          286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-  364 (496)
Q Consensus       286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p-  364 (496)
                      ...            +.  ......+|+|||+|.+...             ....|+..++........+++++++..| 
T Consensus        82 ~~~------------~~--~~~~~~~liiDdi~~l~~~-------------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~  134 (227)
T PRK08903         82 LLA------------FD--FDPEAELYAVDDVERLDDA-------------QQIALFNLFNRVRAHGQGALLVAGPAAPL  134 (227)
T ss_pred             HHH------------Hh--hcccCCEEEEeChhhcCch-------------HHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence            321            11  1123479999999987321             1133444444333333334444444333 


Q ss_pred             -ccccHHHHHHhh--hhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHH
Q 010975          365 -WELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL  441 (496)
Q Consensus       365 -~~Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~  441 (496)
                       ..+.+.+.+||.  ..+.+++|+.+++..+++.+.......              ++.+.+..+.+ -+.++++.+.+.
T Consensus       135 ~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~--------------l~~~al~~L~~-~~~gn~~~l~~~  199 (227)
T PRK08903        135 ALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQ--------------LADEVPDYLLT-HFRRDMPSLMAL  199 (227)
T ss_pred             hCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCC--------------CCHHHHHHHHH-hccCCHHHHHHH
Confidence             235688898984  578999999998888888765443322              23333444444 566666665555


Q ss_pred             hhccccCCCCCCCCCCCCCCchhHHHHhh
Q 010975          442 LEGRQEVAPDDELPQIGPIRPEDVEIALK  470 (496)
Q Consensus       442 le~~~~i~~~~~~~~~~~It~eDf~~Al~  470 (496)
                      ++.-....    ....++||...+++++.
T Consensus       200 l~~l~~~~----~~~~~~i~~~~~~~~l~  224 (227)
T PRK08903        200 LDALDRYS----LEQKRPVTLPLLREMLA  224 (227)
T ss_pred             HHHHHHHH----HHhCCCCCHHHHHHHHh
Confidence            54322111    01124689888888876

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=99.45  E-value=9.6e-14  Score=148.01  Aligned_cols=154  Identities=18%  Similarity=0.359  Sum_probs=97.9

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeecccccccccCChH-HHHHHHHHHhhhcCCcceehhhHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAIISQ  323 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~s~l~~~~~G~~e-~~l~~lf~~a~~~~p~ILfIDEID~L~~~  323 (496)
                      ++++||||||+|||+|++++++++     +..++++++.++...+..... ..+.. |......++.+|+|||++.+.+.
T Consensus       131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~  209 (440)
T PRK14088        131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK  209 (440)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence            579999999999999999999986     457888888776654432111 11122 22222235689999999988543


Q ss_pred             hcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccc---ccHHHHHHhh--hhhcccCCCHHHHHHHHHhhCC
Q 010975          324 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLP  398 (496)
Q Consensus       324 r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~---Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~  398 (496)
                      ..           ....++..++.+...+. .+|+++.+.|..   +.+.+.+||.  ..+.+.+|+.++|..|++..+.
T Consensus       210 ~~-----------~q~elf~~~n~l~~~~k-~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~  277 (440)
T PRK14088        210 TG-----------VQTELFHTFNELHDSGK-QIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE  277 (440)
T ss_pred             HH-----------HHHHHHHHHHHHHHcCC-eEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence            11           11234444443333333 445555566654   6678889995  3567899999999999999887


Q ss_pred             CCCCCC-CCCcceeeeccc
Q 010975          399 SQTGEE-SLPYDLLVERTE  416 (496)
Q Consensus       399 ~~~~~~-~~~l~~la~~t~  416 (496)
                      ...... +..++.+++...
T Consensus       278 ~~~~~l~~ev~~~Ia~~~~  296 (440)
T PRK14088        278 IEHGELPEEVLNFVAENVD  296 (440)
T ss_pred             hcCCCCCHHHHHHHHhccc
Confidence            544332 122344555444

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=99.44  E-value=2.5e-13  Score=142.66  Aligned_cols=179  Identities=25%  Similarity=0.364  Sum_probs=117.6

Q ss_pred             hhhcchHHHHHHhhhhcccccCccc-----c-ccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc-cc
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKY-----F-TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KW  289 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~-----~-~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~-~~  289 (496)
                      -++|++++++.+...+....+.-..     . ........++||+||||||||++|+++|..++.+|..++++.+.. .|
T Consensus        78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy  157 (413)
T TIGR00382        78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY  157 (413)
T ss_pred             eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence            4899999999998776322221110     0 001122468999999999999999999999999999999888753 57


Q ss_pred             cCCh-HHHHHHHHHHh----hhcCCcceehhhHHHHHhhhcCCcchhHHh-hhhhhhhhhhccCccc----------cCc
Q 010975          290 RGDS-EKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEAS-RRLKTELLIQMDGLTQ----------SDE  353 (496)
Q Consensus       290 ~G~~-e~~l~~lf~~a----~~~~p~ILfIDEID~L~~~r~~~~~~~~~~-~~i~~~Ll~~ld~~~~----------~~~  353 (496)
                      +|.. +..+..++..+    ....++||||||+|++...+.......+++ ..+++.||+.|+|...          ...
T Consensus       158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~  237 (413)
T TIGR00382       158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ  237 (413)
T ss_pred             ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence            7764 44455544432    234568999999999987543222111111 2467778888875421          123


Q ss_pred             EEEEEeccCCcc--------------------------------------------------cccHHHHHHhhhhhcccC
Q 010975          354 LVFVLAATNLPW--------------------------------------------------ELDAAMLRRLEKRILVPL  383 (496)
Q Consensus       354 ~viVIatTn~p~--------------------------------------------------~Ld~aL~rRf~~~I~~~~  383 (496)
                      ..++|.|+|-..                                                  .+.|+++.|++.++.|.+
T Consensus       238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~p  317 (413)
T TIGR00382       238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEK  317 (413)
T ss_pred             CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCC
Confidence            456777777510                                                  023455557788788888


Q ss_pred             CCHHHHHHHHHh
Q 010975          384 PDTEARRAMFES  395 (496)
Q Consensus       384 P~~eeR~~Il~~  395 (496)
                      .+.++..+|+..
T Consensus       318 L~~~~L~~Il~~  329 (413)
T TIGR00382       318 LDEEALIAILTK  329 (413)
T ss_pred             CCHHHHHHHHHH
Confidence            888888888765

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.44  E-value=4.2e-13  Score=147.69  Aligned_cols=168  Identities=16%  Similarity=0.185  Sum_probs=113.3

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeee------
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN------  279 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~------  279 (496)
                      +.+++++.+|++++|++.+++.|...+...           ..++++||+||||||||++|+.+|+.+++.--.      
T Consensus         6 l~~kyRP~~f~eivGQe~i~~~L~~~i~~~-----------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~   74 (620)
T PRK14954          6 IARKYRPSKFADITAQEHITHTIQNSLRMD-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYL   74 (620)
T ss_pred             HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccc
Confidence            345678899999999999999999877432           123569999999999999999999999663100      


Q ss_pred             ----eeccc------c-----c--ccccCC---hHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhh
Q 010975          280 ----ISASS------V-----V--SKWRGD---SEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASR  335 (496)
Q Consensus       280 ----v~~s~------l-----~--~~~~G~---~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~  335 (496)
                          -.|..      +     .  ..+.+.   ....++.+.+.+..    ....|++|||+|.+...            
T Consensus        75 ~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~------------  142 (620)
T PRK14954         75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA------------  142 (620)
T ss_pred             cccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH------------
Confidence                01100      0     0  001111   13445555554421    22359999999988422            


Q ss_pred             hhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975          336 RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       336 ~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                       ..+.|+..++.   .+..+++|.+|+.+..+.+++++|+.. +.|..++.++....++..+....
T Consensus       143 -a~naLLK~LEe---Pp~~tv~IL~t~~~~kLl~TI~SRc~~-vef~~l~~~ei~~~L~~i~~~eg  203 (620)
T PRK14954        143 -AFNAFLKTLEE---PPPHAIFIFATTELHKIPATIASRCQR-FNFKRIPLDEIQSQLQMICRAEG  203 (620)
T ss_pred             -HHHHHHHHHhC---CCCCeEEEEEeCChhhhhHHHHhhceE-EecCCCCHHHHHHHHHHHHHHcC
Confidence             23568888773   223344555556678888999999965 99999999998888887776543

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.43  E-value=3.4e-13  Score=148.92  Aligned_cols=167  Identities=19%  Similarity=0.185  Sum_probs=117.2

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeee----ee
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN----IS  281 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~----v~  281 (496)
                      +..++++..|++++|++.+++.|...+....           ...++||+||||+|||++|+++|+.+++....    -.
T Consensus         6 l~~kyRP~~f~~liGq~~i~~~L~~~l~~~r-----------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~   74 (620)
T PRK14948          6 LHHKYRPQRFDELVGQEAIATTLKNALISNR-----------IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEP   74 (620)
T ss_pred             HHHHhCCCcHhhccChHHHHHHHHHHHHcCC-----------CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCC
Confidence            4567788899999999999999999886422           23579999999999999999999998653110    00


Q ss_pred             cc--------------ccc--ccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhh
Q 010975          282 AS--------------SVV--SKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTEL  341 (496)
Q Consensus       282 ~s--------------~l~--~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~L  341 (496)
                      |.              ++.  .......-..++.+++.+..    ....|++|||+|.|..             ...+.|
T Consensus        75 Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-------------~a~naL  141 (620)
T PRK14948         75 CGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-------------AAFNAL  141 (620)
T ss_pred             CcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-------------HHHHHH
Confidence            10              000  01112234567777766643    2235999999998832             234678


Q ss_pred             hhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCC
Q 010975          342 LIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ  400 (496)
Q Consensus       342 l~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~  400 (496)
                      +..++.   ....+++|++|+++..+.+++++|+.. +.|+.++.++....++.++.+.
T Consensus       142 LK~LEe---Pp~~tvfIL~t~~~~~llpTIrSRc~~-~~f~~l~~~ei~~~L~~ia~ke  196 (620)
T PRK14948        142 LKTLEE---PPPRVVFVLATTDPQRVLPTIISRCQR-FDFRRIPLEAMVQHLSEIAEKE  196 (620)
T ss_pred             HHHHhc---CCcCeEEEEEeCChhhhhHHHHhheeE-EEecCCCHHHHHHHHHHHHHHh
Confidence            888873   334455666777888899999999965 8898888888887777766554

>PRK08727 hypothetical protein; Validated

Probab=99.42  E-value=4.5e-13  Score=131.31  Aligned_cols=130  Identities=23%  Similarity=0.262  Sum_probs=84.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcC
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE  326 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~  326 (496)
                      ..++|+||+|||||+|++++++++   +..+.+++..++.        ..+...++...  +..+|+|||++.+..... 
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l~--~~dlLiIDDi~~l~~~~~-  110 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEALE--GRSLVALDGLESIAGQRE-  110 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHHh--cCCEEEEeCcccccCChH-
Confidence            459999999999999999998876   5556666654432        22333444333  346999999998754311 


Q ss_pred             CcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccc---ccHHHHHHh--hhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975          327 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRL--EKRILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       327 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~---Ld~aL~rRf--~~~I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                                ....++..++.....+.. +|+++...|..   +++++++||  ...+.++.|+.+++..+++..+....
T Consensus       111 ----------~~~~lf~l~n~~~~~~~~-vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~  179 (233)
T PRK08727        111 ----------DEVALFDFHNRARAAGIT-LLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG  179 (233)
T ss_pred             ----------HHHHHHHHHHHHHHcCCe-EEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC
Confidence                      112333444332222222 34434445554   478999997  45678999999999999998765443

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.41  E-value=6e-13  Score=146.74  Aligned_cols=162  Identities=18%  Similarity=0.216  Sum_probs=112.9

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhccee--------
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF--------  277 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~--------  277 (496)
                      +.+++.+.+|++++|++++++.|...+....           .++.+||+||||+|||++|+.+|+.+++..        
T Consensus         6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~-----------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c   74 (585)
T PRK14950          6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEGR-----------VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPC   74 (585)
T ss_pred             HHHHhCCCCHHHhcCCHHHHHHHHHHHHhCC-----------CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence            4577889999999999999999988775421           234689999999999999999999885321        


Q ss_pred             -----------------eeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhh
Q 010975          278 -----------------FNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRR  336 (496)
Q Consensus       278 -----------------i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~  336 (496)
                                       +.++.+.      ...-..++.+.+.+..    ....|++|||+|.|..             .
T Consensus        75 ~~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-------------~  135 (585)
T PRK14950         75 GTCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-------------A  135 (585)
T ss_pred             ccCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-------------H
Confidence                             1111110      1122334554443332    2345999999998742             2


Q ss_pred             hhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975          337 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       337 i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                      ..+.|+..++..   ...+++|.+++..+.+.+.+++|+.. +.|..++.++...+++..+....
T Consensus       136 a~naLLk~LEep---p~~tv~Il~t~~~~kll~tI~SR~~~-i~f~~l~~~el~~~L~~~a~~eg  196 (585)
T PRK14950        136 AFNALLKTLEEP---PPHAIFILATTEVHKVPATILSRCQR-FDFHRHSVADMAAHLRKIAAAEG  196 (585)
T ss_pred             HHHHHHHHHhcC---CCCeEEEEEeCChhhhhHHHHhccce-eeCCCCCHHHHHHHHHHHHHHcC
Confidence            245677777642   23345555667777788899999965 89999999999988888776544

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=99.41  E-value=1.4e-13  Score=146.63  Aligned_cols=140  Identities=18%  Similarity=0.286  Sum_probs=91.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcC
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE  326 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~  326 (496)
                      ++++||||||+|||+|++++++++   +.++++++..++...+.......-...|.... ..+.+|+|||++.+.+... 
T Consensus       142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~-  219 (445)
T PRK12422        142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA-  219 (445)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh-
Confidence            679999999999999999999987   67788888776654432211111111233222 2457999999999854311 


Q ss_pred             CcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc---cccHHHHHHhh--hhhcccCCCHHHHHHHHHhhCCCCC
Q 010975          327 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       327 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~---~Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                                ....++..++.+...+. .+|++++..|.   .+++++++||.  ..+.+..|+.++|..|++..+....
T Consensus       220 ----------~qeelf~l~N~l~~~~k-~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~  288 (445)
T PRK12422        220 ----------TQEEFFHTFNSLHTEGK-LIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS  288 (445)
T ss_pred             ----------hHHHHHHHHHHHHHCCC-cEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC
Confidence                      12233333332222222 44555545554   46789999995  6788888999999999999887654


Q ss_pred             C
Q 010975          402 G  402 (496)
Q Consensus       402 ~  402 (496)
                      .
T Consensus       289 ~  289 (445)
T PRK12422        289 I  289 (445)
T ss_pred             C
Confidence            3

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=99.39  E-value=4.6e-13  Score=145.72  Aligned_cols=153  Identities=17%  Similarity=0.266  Sum_probs=99.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR  324 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r  324 (496)
                      +.++|||++|+|||+|++++++++     +..++++++.++..++...........|.+. -..+.+|+||||+.+.++.
T Consensus       315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke  393 (617)
T PRK14086        315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE  393 (617)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH
Confidence            459999999999999999999987     4678899988877655432222111223221 1235799999999886432


Q ss_pred             cCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc-c---cccHHHHHHhh--hhhcccCCCHHHHHHHHHhhCC
Q 010975          325 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-W---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLP  398 (496)
Q Consensus       325 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p-~---~Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~  398 (496)
                                 .....|+..++.+...+..+ || |++.+ .   .+++.|++||.  .++.+..|+.+.|..|++..+.
T Consensus       394 -----------~tqeeLF~l~N~l~e~gk~I-II-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~  460 (617)
T PRK14086        394 -----------STQEEFFHTFNTLHNANKQI-VL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV  460 (617)
T ss_pred             -----------HHHHHHHHHHHHHHhcCCCE-EE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence                       11233445554443333333 44 55543 3   47889999995  4558888999999999999987


Q ss_pred             CCCCCCCC-Ccceeeeccc
Q 010975          399 SQTGEESL-PYDLLVERTE  416 (496)
Q Consensus       399 ~~~~~~~~-~l~~la~~t~  416 (496)
                      ........ .++.|+.+..
T Consensus       461 ~r~l~l~~eVi~yLa~r~~  479 (617)
T PRK14086        461 QEQLNAPPEVLEFIASRIS  479 (617)
T ss_pred             hcCCCCCHHHHHHHHHhcc
Confidence            76554322 2344555444

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.39  E-value=5.8e-13  Score=149.68  Aligned_cols=166  Identities=20%  Similarity=0.222  Sum_probs=115.4

Q ss_pred             hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc-----cccC
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-----KWRG  291 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~-----~~~G  291 (496)
                      .|+|++++++.|.+.+......-   .....|..++||+||||||||.+|+++|..++.+++.++++++..     ...|
T Consensus       459 ~ViGQ~~ai~~l~~~i~~~~~gl---~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG  535 (758)
T PRK11034        459 LVFGQDKAIEALTEAIKMSRAGL---GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG  535 (758)
T ss_pred             eEeCcHHHHHHHHHHHHHHhccc---cCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence            48999999999999886432100   000123357999999999999999999999999999999887643     2222


Q ss_pred             ChHHH-----HHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------cccCcEEEEE
Q 010975          292 DSEKL-----IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSDELVFVL  358 (496)
Q Consensus       292 ~~e~~-----l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~~~~viVI  358 (496)
                      ...+.     -..+.+..+....+||||||||++.+.             +.+.|+..+|+-        ...-.+++||
T Consensus       536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~-------------v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI  602 (758)
T PRK11034        536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPD-------------VFNLLLQVMDNGTLTDNNGRKADFRNVVLV  602 (758)
T ss_pred             CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHH-------------HHHHHHHHHhcCeeecCCCceecCCCcEEE
Confidence            21111     112233334455689999999998533             456677666532        1122457788


Q ss_pred             eccCCc-------------------------ccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCC
Q 010975          359 AATNLP-------------------------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLP  398 (496)
Q Consensus       359 atTn~p-------------------------~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~  398 (496)
                      +|||.-                         ..+.|.++.|++.++.|++.+.++..+|+...+.
T Consensus       603 ~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~  667 (758)
T PRK11034        603 MTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIV  667 (758)
T ss_pred             EeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHH
Confidence            999832                         1255788889999999999999999999887764

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]

Probab=99.36  E-value=2e-13  Score=142.62  Aligned_cols=208  Identities=24%  Similarity=0.254  Sum_probs=145.2

Q ss_pred             CCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccc---
Q 010975          212 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV---  285 (496)
Q Consensus       212 ~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l---  285 (496)
                      .....++||...+..++.+.+...-          .....|||.|.+||||..+||+|++.+   +.||+.+||..+   
T Consensus       219 ~~~~~~iIG~S~am~~ll~~i~~VA----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes  288 (550)
T COG3604         219 VLEVGGIIGRSPAMRQLLKEIEVVA----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES  288 (550)
T ss_pred             hcccccceecCHHHHHHHHHHHHHh----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence            4567789999999999988875533          233679999999999999999999988   678999999544   


Q ss_pred             ------cccccCChHHHHHH---HHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEE
Q 010975          286 ------VSKWRGDSEKLIKV---LFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF  356 (496)
Q Consensus       286 ------~~~~~G~~e~~l~~---lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi  356 (496)
                            ++...|.+.+.+..   -|+.|.+   +.||+|||..|...-     .....+.+++.-++.+.+-....-.|.
T Consensus       289 LlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGelPL~l-----QaKLLRvLQegEieRvG~~r~ikVDVR  360 (550)
T COG3604         289 LLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGELPLAL-----QAKLLRVLQEGEIERVGGDRTIKVDVR  360 (550)
T ss_pred             HHHHHHhcccccccccchhccCcceeecCC---CeEechhhccCCHHH-----HHHHHHHHhhcceeecCCCceeEEEEE
Confidence                  44444555444432   4555554   799999998775442     233445666666666665544455699


Q ss_pred             EEeccCCcccccHHHH---------HHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccCCcCCch
Q 010975          357 VLAATNLPWELDAAML---------RRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYSGSDI  423 (496)
Q Consensus       357 VIatTn~p~~Ld~aL~---------rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI  423 (496)
                      |||+||+.  |...++         =|+.. +.+..|...||.+    +.++++.+....       +......++++.+
T Consensus       361 iIAATNRD--L~~~V~~G~FRaDLYyRLsV-~Pl~lPPLRER~~DIplLA~~Fle~~~~~-------~gr~~l~ls~~Al  430 (550)
T COG3604         361 VIAATNRD--LEEMVRDGEFRADLYYRLSV-FPLELPPLRERPEDIPLLAGYFLEKFRRR-------LGRAILSLSAEAL  430 (550)
T ss_pred             EEeccchh--HHHHHHcCcchhhhhhcccc-cccCCCCcccCCccHHHHHHHHHHHHHHh-------cCCcccccCHHHH
Confidence            99999985  333333         36654 6777788887765    444444433222       2222445788889


Q ss_pred             hhcchhhhccHHHHHHHHhhcccc
Q 010975          424 RLVSKEAAMQPLRRLMVLLEGRQE  447 (496)
Q Consensus       424 ~~l~~~A~~~a~rR~~~~le~~~~  447 (496)
                      +.+.+..|.+++|++.+.+++..-
T Consensus       431 ~~L~~y~wPGNVRELen~veRavl  454 (550)
T COG3604         431 ELLSSYEWPGNVRELENVVERAVL  454 (550)
T ss_pred             HHHHcCCCCCcHHHHHHHHHHHHH
Confidence            999999999999999988876654

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=99.36  E-value=2.1e-12  Score=128.80  Aligned_cols=133  Identities=26%  Similarity=0.292  Sum_probs=89.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc------ccccccCChHHH-HHH-------------------HHHH
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASS------VVSKWRGDSEKL-IKV-------------------LFEL  303 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~------l~~~~~G~~e~~-l~~-------------------lf~~  303 (496)
                      .++||+||||||||++|+++|+.+|.+++.+++..      +.+.+.+..... ...                   .+..
T Consensus        22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~  101 (262)
T TIGR02640        22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL  101 (262)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence            68999999999999999999999999999997753      333332211111 111                   1111


Q ss_pred             hhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc-------------ccCcEEEEEeccCCcc-----
Q 010975          304 ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------------QSDELVFVLAATNLPW-----  365 (496)
Q Consensus       304 a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-------------~~~~~viVIatTn~p~-----  365 (496)
                      |.. .+.+|+|||++.+.++             +.+.|+..++.-.             .....+.||+|+|...     
T Consensus       102 A~~-~g~~lllDEi~r~~~~-------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~  167 (262)
T TIGR02640       102 AVR-EGFTLVYDEFTRSKPE-------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH  167 (262)
T ss_pred             HHH-cCCEEEEcchhhCCHH-------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccccee
Confidence            222 2369999999986433             2233444443210             0112466889999762     


Q ss_pred             cccHHHHHHhhhhhcccCCCHHHHHHHHHhhC
Q 010975          366 ELDAAMLRRLEKRILVPLPDTEARRAMFESLL  397 (496)
Q Consensus       366 ~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l  397 (496)
                      .+++++++||. .+.++.|+.++..+|++...
T Consensus       168 ~l~~aL~~R~~-~i~i~~P~~~~e~~Il~~~~  198 (262)
T TIGR02640       168 ETQDALLDRLI-TIFMDYPDIDTETAILRAKT  198 (262)
T ss_pred             cccHHHHhhcE-EEECCCCCHHHHHHHHHHhh
Confidence            57899999995 59999999999999998865

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=99.36  E-value=6.5e-13  Score=128.98  Aligned_cols=169  Identities=23%  Similarity=0.358  Sum_probs=103.2

Q ss_pred             CCCccchhh-cc--hHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeec
Q 010975          211 PDVKWESIK-GL--ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA  282 (496)
Q Consensus       211 ~~~~l~dli-G~--e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~  282 (496)
                      |+.+|++.+ |.  +.+...+..+...+.          ...+.++||||+|+|||+|.+++++++     +..++++++
T Consensus         3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~~----------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~   72 (219)
T PF00308_consen    3 PKYTFDNFVVGESNELAYAAAKAIAENPG----------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA   72 (219)
T ss_dssp             TT-SCCCS--TTTTHHHHHHHHHHHHSTT----------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred             CCCccccCCcCCcHHHHHHHHHHHHhcCC----------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence            567788864 53  333434443332211          122468999999999999999999876     567889988


Q ss_pred             ccccccccCChHH-HHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEecc
Q 010975          283 SSVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT  361 (496)
Q Consensus       283 s~l~~~~~G~~e~-~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatT  361 (496)
                      .++...+...... .+..+.+..+  ...+|+||+++.+.++           ..+...++..++.....+.. +|+++.
T Consensus        73 ~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~-----------~~~q~~lf~l~n~~~~~~k~-li~ts~  138 (219)
T PF00308_consen   73 EEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK-----------QRTQEELFHLFNRLIESGKQ-LILTSD  138 (219)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH-----------HHHHHHHHHHHHHHHHTTSE-EEEEES
T ss_pred             HHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc-----------hHHHHHHHHHHHHHHhhCCe-EEEEeC
Confidence            8776554322211 1222222222  3469999999988543           23445666666665555554 455555


Q ss_pred             CCcc---cccHHHHHHhhh--hhcccCCCHHHHHHHHHhhCCCCCCC
Q 010975          362 NLPW---ELDAAMLRRLEK--RILVPLPDTEARRAMFESLLPSQTGE  403 (496)
Q Consensus       362 n~p~---~Ld~aL~rRf~~--~I~~~~P~~eeR~~Il~~~l~~~~~~  403 (496)
                      ..|.   .+++.|.+||..  .+.+..|+.++|..|++..+......
T Consensus       139 ~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~  185 (219)
T PF00308_consen  139 RPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE  185 (219)
T ss_dssp             S-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--
T ss_pred             CCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence            5654   367899999964  67788899999999999998776655

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=99.36  E-value=2.6e-12  Score=113.29  Aligned_cols=138  Identities=41%  Similarity=0.647  Sum_probs=88.7

Q ss_pred             cchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCChHHH
Q 010975          220 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKL  296 (496)
Q Consensus       220 G~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~~e~~  296 (496)
                      |.+...+.+...+...            ..++++++||||+|||++++.+++.+   +.+++.+++..............
T Consensus         2 ~~~~~~~~i~~~~~~~------------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~   69 (151)
T cd00009           2 GQEEAIEALREALELP------------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG   69 (151)
T ss_pred             chHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhh
Confidence            5566666666665331            23689999999999999999999998   88899998877654332211111


Q ss_pred             ---HHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccc---cCcEEEEEeccCCcc--ccc
Q 010975          297 ---IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ---SDELVFVLAATNLPW--ELD  368 (496)
Q Consensus       297 ---l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~---~~~~viVIatTn~p~--~Ld  368 (496)
                         ............+.+|+|||++.+....             ...++..+.....   ....+.+|++++...  .++
T Consensus        70 ~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~-------------~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~  136 (151)
T cd00009          70 HFLVRLLFELAEKAKPGVLFIDEIDSLSRGA-------------QNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLD  136 (151)
T ss_pred             hhhHhHHHHhhccCCCeEEEEeChhhhhHHH-------------HHHHHHHHHhcCceeccCCCeEEEEecCccccCCcC
Confidence               1122233344567899999999873221             1223333332221   134467788888776  788


Q ss_pred             HHHHHHhhhhhccc
Q 010975          369 AAMLRRLEKRILVP  382 (496)
Q Consensus       369 ~aL~rRf~~~I~~~  382 (496)
                      +.+.+||+.++.++
T Consensus       137 ~~~~~r~~~~i~~~  150 (151)
T cd00009         137 RALYDRLDIRIVIP  150 (151)
T ss_pred             hhHHhhhccEeecC
Confidence            89999997666654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.35  E-value=3.5e-12  Score=140.86  Aligned_cols=163  Identities=19%  Similarity=0.207  Sum_probs=116.0

Q ss_pred             hhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce----------
Q 010975          207 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------  276 (496)
Q Consensus       207 ~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~----------  276 (496)
                      .+++++.+|++|+|++++++.|...+...           ..++.+||+||+|+|||++|+.+|+.+.+.          
T Consensus         8 ~~kyRP~~f~~viGq~~~~~~L~~~i~~~-----------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg   76 (614)
T PRK14971          8 ARKYRPSTFESVVGQEALTTTLKNAIATN-----------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACN   76 (614)
T ss_pred             HHHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence            45678899999999999999999988542           123569999999999999999999988532          


Q ss_pred             ---------------eeeeecccccccccCChHHHHHHHHHHhhhc----CCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975          277 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRL  337 (496)
Q Consensus       277 ---------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~----~p~ILfIDEID~L~~~r~~~~~~~~~~~~i  337 (496)
                                     ++.+++.+      ......++.+.+.+...    ...|++|||+|.|..             ..
T Consensus        77 ~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-------------~a  137 (614)
T PRK14971         77 ECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-------------AA  137 (614)
T ss_pred             cchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-------------HH
Confidence                           22222211      01134566666555432    235999999998832             23


Q ss_pred             hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC
Q 010975          338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE  403 (496)
Q Consensus       338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~  403 (496)
                      .+.|+..|+.   .+..+++|.+|+.+..+-+++++|+.. +.|..++.++....++..+...+..
T Consensus       138 ~naLLK~LEe---pp~~tifIL~tt~~~kIl~tI~SRc~i-v~f~~ls~~ei~~~L~~ia~~egi~  199 (614)
T PRK14971        138 FNAFLKTLEE---PPSYAIFILATTEKHKILPTILSRCQI-FDFNRIQVADIVNHLQYVASKEGIT  199 (614)
T ss_pred             HHHHHHHHhC---CCCCeEEEEEeCCchhchHHHHhhhhe-eecCCCCHHHHHHHHHHHHHHcCCC
Confidence            4678888874   223344555666677899999999965 9999999999998888877665543

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.34  E-value=1.6e-12  Score=146.95  Aligned_cols=166  Identities=23%  Similarity=0.244  Sum_probs=116.4

Q ss_pred             chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc-------
Q 010975          216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-------  288 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~-------  288 (496)
                      +.|+|++++++.+.+.+......   ......|..++||+||||||||++|+++|+.++.+++.++++++...       
T Consensus       454 ~~v~GQ~~ai~~l~~~i~~~~~g---~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~li  530 (731)
T TIGR02639       454 AKIFGQDEAIDSLVSSIKRSRAG---LGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLI  530 (731)
T ss_pred             cceeCcHHHHHHHHHHHHHHhcC---CCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHh
Confidence            35899999999998887542110   00011233458999999999999999999999999999998876432       


Q ss_pred             -----ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc--------ccCcEE
Q 010975          289 -----WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELV  355 (496)
Q Consensus       289 -----~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~v  355 (496)
                           |+|..+  ...+.+.++....+||+|||+|++.++             +.+.|++.+|+-.        ..-.++
T Consensus       531 g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka~~~-------------~~~~Ll~~ld~g~~~d~~g~~vd~~~~  595 (731)
T TIGR02639       531 GAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKAHPD-------------IYNILLQVMDYATLTDNNGRKADFRNV  595 (731)
T ss_pred             cCCCCCcccch--hhHHHHHHHhCCCeEEEEechhhcCHH-------------HHHHHHHhhccCeeecCCCcccCCCCC
Confidence                 223211  122344445556689999999987432             4456677666321        122457


Q ss_pred             EEEeccCCcc-------------------------cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCC
Q 010975          356 FVLAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS  399 (496)
Q Consensus       356 iVIatTn~p~-------------------------~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~  399 (496)
                      +||+|||...                         .+.|.++.|++.++.|.+.+.++..+|++..+.+
T Consensus       596 iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~  664 (731)
T TIGR02639       596 ILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDE  664 (731)
T ss_pred             EEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence            7888987641                         1567888899999999999999999999988753

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=99.34  E-value=1.8e-12  Score=133.29  Aligned_cols=196  Identities=21%  Similarity=0.216  Sum_probs=124.1

Q ss_pred             hhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccc-----
Q 010975          218 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW-----  289 (496)
Q Consensus       218 liG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~-----  289 (496)
                      ++|.....+.+.+.+....          .....|||+|++||||+++|++|+...   +.+|+.++|..+....     
T Consensus         1 liG~S~~m~~~~~~~~~~a----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l   70 (329)
T TIGR02974         1 LIGESNAFLEVLEQVSRLA----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL   70 (329)
T ss_pred             CCcCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence            4566666666666554332          223579999999999999999998866   4799999998764321     


Q ss_pred             cCChH-------HHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC--------ccccCcE
Q 010975          290 RGDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG--------LTQSDEL  354 (496)
Q Consensus       290 ~G~~e-------~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~--------~~~~~~~  354 (496)
                      .|...       ......++.+.   .++||||||+.|...             ++..|+..++.        .......
T Consensus        71 fG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~  134 (329)
T TIGR02974        71 FGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATASLL-------------VQEKLLRVIEYGEFERVGGSQTLQVD  134 (329)
T ss_pred             hccccccccCcccccCCchhhCC---CCEEEeCChHhCCHH-------------HHHHHHHHHHcCcEEecCCCceeccc
Confidence            11100       00111244443   389999999998543             22334444432        1122344


Q ss_pred             EEEEeccCCcc-------cccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecc-cCCcCCc
Q 010975          355 VFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERT-EGYSGSD  422 (496)
Q Consensus       355 viVIatTn~p~-------~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t-~g~s~~d  422 (496)
                      +.+|++|+..-       .+.+.|..|+.. +.+..|...+|.+    ++++++......       ..... .++++..
T Consensus       135 ~RiI~at~~~l~~~~~~g~fr~dL~~rl~~-~~i~lPpLReR~eDI~~L~~~fl~~~~~~-------~~~~~~~~ls~~a  206 (329)
T TIGR02974       135 VRLVCATNADLPALAAEGRFRADLLDRLAF-DVITLPPLRERQEDIMLLAEHFAIRMARE-------LGLPLFPGFTPQA  206 (329)
T ss_pred             eEEEEechhhHHHHhhcCchHHHHHHHhcc-hhcCCCchhhhhhhHHHHHHHHHHHHHHH-------hCCCCCCCcCHHH
Confidence            77888887641       355677778854 6777787777765    444444332111       11112 4678889


Q ss_pred             hhhcchhhhccHHHHHHHHhhcccc
Q 010975          423 IRLVSKEAAMQPLRRLMVLLEGRQE  447 (496)
Q Consensus       423 I~~l~~~A~~~a~rR~~~~le~~~~  447 (496)
                      +..|.++.|.++++++.+.++....
T Consensus       207 ~~~L~~y~WPGNvrEL~n~i~~~~~  231 (329)
T TIGR02974       207 REQLLEYHWPGNVRELKNVVERSVY  231 (329)
T ss_pred             HHHHHhCCCCchHHHHHHHHHHHHH
Confidence            9999999999999999888775543

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=99.32  E-value=1.5e-12  Score=124.44  Aligned_cols=159  Identities=18%  Similarity=0.165  Sum_probs=107.3

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-c----ceeeee
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-K----TTFFNI  280 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-~----~~~i~v  280 (496)
                      |++++.+..+.|++|.++..++|.-+....            .-.+++|.|||||||||-+.++|+++ |    --+.++
T Consensus        17 wVeKYrP~~l~dIVGNe~tv~rl~via~~g------------nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL   84 (333)
T KOG0991|consen   17 WVEKYRPSVLQDIVGNEDTVERLSVIAKEG------------NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL   84 (333)
T ss_pred             HHHhhCchHHHHhhCCHHHHHHHHHHHHcC------------CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence            888999999999999999999998766432            12589999999999999999999988 2    346778


Q ss_pred             ecccccccccCChHHHHHHHHHHhh-hcCC---cceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEE
Q 010975          281 SASSVVSKWRGDSEKLIKVLFELAR-HHAP---STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF  356 (496)
Q Consensus       281 ~~s~l~~~~~G~~e~~l~~lf~~a~-~~~p---~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi  356 (496)
                      ++++-.+-.+  ....+ ..|..-+ ...|   .|+++||+|++....+             .+|-..|+-+.+   ...
T Consensus        85 NASdeRGIDv--VRn~I-K~FAQ~kv~lp~grhKIiILDEADSMT~gAQ-------------QAlRRtMEiyS~---ttR  145 (333)
T KOG0991|consen   85 NASDERGIDV--VRNKI-KMFAQKKVTLPPGRHKIIILDEADSMTAGAQ-------------QALRRTMEIYSN---TTR  145 (333)
T ss_pred             cCccccccHH--HHHHH-HHHHHhhccCCCCceeEEEeeccchhhhHHH-------------HHHHHHHHHHcc---cch
Confidence            8776543211  12222 3343333 2223   4999999999964321             122233332222   234


Q ss_pred             EEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhh
Q 010975          357 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL  396 (496)
Q Consensus       357 VIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~  396 (496)
                      +..++|..+.+-+++.+|+.. +.+.-.+.++...-+...
T Consensus       146 FalaCN~s~KIiEPIQSRCAi-LRysklsd~qiL~Rl~~v  184 (333)
T KOG0991|consen  146 FALACNQSEKIIEPIQSRCAI-LRYSKLSDQQILKRLLEV  184 (333)
T ss_pred             hhhhhcchhhhhhhHHhhhHh-hhhcccCHHHHHHHHHHH
Confidence            667899999999999999966 677666655554433333

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=99.32  E-value=1.4e-12  Score=133.99  Aligned_cols=162  Identities=20%  Similarity=0.271  Sum_probs=100.7

Q ss_pred             CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-------ccee--eeee
Q 010975          211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTF--FNIS  281 (496)
Q Consensus       211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-------~~~~--i~v~  281 (496)
                      .+..|++++|++++++.+.-.+..+            ...|+||.|+||||||++|+++++.+       +.++  ..+.
T Consensus         3 ~~~~f~~i~Gq~~~~~~l~~~~~~~------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~   70 (334)
T PRK13407          3 KPFPFSAIVGQEEMKQAMVLTAIDP------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE   70 (334)
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHhcc------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence            3456999999999999888644321            12589999999999999999999988       2211  1110


Q ss_pred             cc---------cc---------------cccccCC--hHHHHH---HHHHHh--hhcCCcceehhhHHHHHhhhcCCcch
Q 010975          282 AS---------SV---------------VSKWRGD--SEKLIK---VLFELA--RHHAPSTIFLDEIDAIISQRGEARSE  330 (496)
Q Consensus       282 ~s---------~l---------------~~~~~G~--~e~~l~---~lf~~a--~~~~p~ILfIDEID~L~~~r~~~~~~  330 (496)
                      ..         .+               .+...|.  .+..+.   ..|..-  .....++||+||++.+...       
T Consensus        71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~-------  143 (334)
T PRK13407         71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDH-------  143 (334)
T ss_pred             CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHH-------
Confidence            00         00               0001111  000000   001100  0111269999999987433       


Q ss_pred             hHHhhhhhhhhhhhccCcc----------ccCcEEEEEeccCCcc-cccHHHHHHhhhhhcccCCCH-HHHHHHHHhhC
Q 010975          331 HEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLPDT-EARRAMFESLL  397 (496)
Q Consensus       331 ~~~~~~i~~~Ll~~ld~~~----------~~~~~viVIatTn~p~-~Ld~aL~rRf~~~I~~~~P~~-eeR~~Il~~~l  397 (496)
                            +++.|+..|+.-.          ..+.++++++|+|..+ .+++++++||...+.+++|.. ++|.++++...
T Consensus       144 ------~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~  216 (334)
T PRK13407        144 ------IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD  216 (334)
T ss_pred             ------HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence                  3344555554211          1234577888888654 589999999999899988866 99999998754

>TIGR01817 nifA Nif-specific regulatory protein

Probab=99.30  E-value=2.1e-12  Score=141.20  Aligned_cols=216  Identities=26%  Similarity=0.300  Sum_probs=137.7

Q ss_pred             CCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccc
Q 010975          210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV  286 (496)
Q Consensus       210 ~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~  286 (496)
                      .+..++++++|.+...+++.+.+.....          ....|||+|++||||+++|++|+...   +.+|+.++|..+.
T Consensus       190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~  259 (534)
T TIGR01817       190 RRSGKEDGIIGKSPAMRQVVDQARVVAR----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS  259 (534)
T ss_pred             cccCccCceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence            3446789999999999888887754332          23579999999999999999999876   5799999998763


Q ss_pred             ccc-----cCChH----HHH---HHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc-----
Q 010975          287 SKW-----RGDSE----KLI---KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-----  349 (496)
Q Consensus       287 ~~~-----~G~~e----~~l---~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-----  349 (496)
                      ...     .|...    ...   ...+..+   ..++|||||||.|...             ++..|+..++.-.     
T Consensus       260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~~  323 (534)
T TIGR01817       260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISPA-------------FQAKLLRVLQEGEFERVG  323 (534)
T ss_pred             HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCHH-------------HHHHHHHHHhcCcEEECC
Confidence            221     11100    000   0112222   2479999999998543             2334555443211     


Q ss_pred             ---ccCcEEEEEeccCCcc-------cccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecc
Q 010975          350 ---QSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERT  415 (496)
Q Consensus       350 ---~~~~~viVIatTn~p~-------~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t  415 (496)
                         .....+.+|++|+..-       .+.+.|..|+.. +.+..|...+|.+    ++++++.......       ... 
T Consensus       324 ~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~-~~i~lPpLreR~eDi~~L~~~~l~~~~~~~-------~~~-  394 (534)
T TIGR01817       324 GNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINV-VPIFLPPLRERREDIPLLAEAFLEKFNREN-------GRP-  394 (534)
T ss_pred             CCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcC-CeeeCCCcccccccHHHHHHHHHHHHHHHc-------CCC-
Confidence               1112466777776541       255677778854 6667776666643    5566654322111       111 


Q ss_pred             cCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHH
Q 010975          416 EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVE  466 (496)
Q Consensus       416 ~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~  466 (496)
                      .++++..+..|.++.|.++++++.+.++.........      .|+.+|+.
T Consensus       395 ~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~~~~------~I~~~~l~  439 (534)
T TIGR01817       395 LTITPSAIRVLMSCKWPGNVRELENCLERTATLSRSG------TITRSDFS  439 (534)
T ss_pred             CCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCC------cccHHHCc
Confidence            3578888999999999999999988887655433222      25666653

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=99.29  E-value=2e-12  Score=140.34  Aligned_cols=205  Identities=23%  Similarity=0.255  Sum_probs=128.6

Q ss_pred             CccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhh-----------hcceeeeee
Q 010975          213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE-----------CKTTFFNIS  281 (496)
Q Consensus       213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~-----------l~~~~i~v~  281 (496)
                      ..|++++|.....+++.+.+...-          ....+|||+|++||||+++|++|++.           .+.||+.+|
T Consensus       216 ~~f~~iiG~S~~m~~~~~~i~~~A----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in  285 (538)
T PRK15424        216 YVLGDLLGQSPQMEQVRQTILLYA----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN  285 (538)
T ss_pred             cchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence            358899999998888888774432          22357999999999999999999987           367999999


Q ss_pred             ccccccc-----ccCC----hHHH----HHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC-
Q 010975          282 ASSVVSK-----WRGD----SEKL----IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-  347 (496)
Q Consensus       282 ~s~l~~~-----~~G~----~e~~----l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~-  347 (496)
                      |+.+...     ..|.    +...    -..+|+.+..   ++||||||+.|...             ++..|+..++. 
T Consensus       286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~~-------------~Q~kLl~~L~e~  349 (538)
T PRK15424        286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMPLP-------------LQTRLLRVLEEK  349 (538)
T ss_pred             cccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCCHH-------------HHHHHHhhhhcC
Confidence            9876432     1111    1111    1124555543   79999999998544             23344444432 


Q ss_pred             -------ccccCcEEEEEeccCCcc-c------ccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcc
Q 010975          348 -------LTQSDELVFVLAATNLPW-E------LDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYD  409 (496)
Q Consensus       348 -------~~~~~~~viVIatTn~p~-~------Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~  409 (496)
                             .......+.+|++|+..- .      +.+.|.-|+.. +.+..|...+|.+    ++++++.+.....+..  
T Consensus       350 ~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~-~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~--  426 (538)
T PRK15424        350 EVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSI-LRLQLPPLRERVADILPLAESFLKQSLAALSAP--  426 (538)
T ss_pred             eEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcC-CeecCCChhhchhHHHHHHHHHHHHHHHHcCCC--
Confidence                   122223467888887652 1      33445557754 7888888888775    4555554321111111  


Q ss_pred             eeeecccCCcCCchhhcchhhhccHHHHHHHHhhcccc
Q 010975          410 LLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE  447 (496)
Q Consensus       410 ~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~  447 (496)
                       +....-++..+.+..|.++.|.+++|++.+.++....
T Consensus       427 -~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i  463 (538)
T PRK15424        427 -FSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLAL  463 (538)
T ss_pred             -CCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence             1111112223344678889999999999888876543

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=1.3e-11  Score=128.48  Aligned_cols=226  Identities=20%  Similarity=0.258  Sum_probs=140.1

Q ss_pred             cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce-----eeeeecccccccc
Q 010975          215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-----FFNISASSVVSKW  289 (496)
Q Consensus       215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~-----~i~v~~s~l~~~~  289 (496)
                      -+.+.+.+..++++...+...+..        ..|.+++++||||||||++++.+++++...     ++++||....+.+
T Consensus        16 P~~l~~Re~ei~~l~~~l~~~~~~--------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~   87 (366)
T COG1474          16 PEELPHREEEINQLASFLAPALRG--------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY   87 (366)
T ss_pred             cccccccHHHHHHHHHHHHHHhcC--------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence            345899999999999887554432        234569999999999999999999999444     8999996654332


Q ss_pred             c---------------CCh-HHHHHHHHHHhhh-cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccC
Q 010975          290 R---------------GDS-EKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD  352 (496)
Q Consensus       290 ~---------------G~~-e~~l~~lf~~a~~-~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~  352 (496)
                      .               |.. ......+++.... ...-|+++||+|.|....+          .++-.|+...+   ...
T Consensus        88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~----------~~LY~L~r~~~---~~~  154 (366)
T COG1474          88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG----------EVLYSLLRAPG---ENK  154 (366)
T ss_pred             HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc----------hHHHHHHhhcc---ccc
Confidence            1               221 1222233333322 3446999999999975522          23333433333   225


Q ss_pred             cEEEEEeccCCcc---cccHHHHHHhh-hhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcch
Q 010975          353 ELVFVLAATNLPW---ELDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSK  428 (496)
Q Consensus       353 ~~viVIatTn~p~---~Ld~aL~rRf~-~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~  428 (496)
                      .++.+|+.+|..+   .+++.+.+++. ..|.|++++.+|...|++......-....            ++ .++-.+|.
T Consensus       155 ~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~------------~~-~~vl~lia  221 (366)
T COG1474         155 VKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGV------------ID-DDVLKLIA  221 (366)
T ss_pred             eeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCC------------cC-ccHHHHHH
Confidence            6688999999884   58899999774 45789999999999999988764322111            11 11111111


Q ss_pred             ---hhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCcc
Q 010975          429 ---EAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH  477 (496)
Q Consensus       429 ---~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~  477 (496)
                         .+..+.+|+.+..+....+++..+..   ..++.+|+.+|...+.+...
T Consensus       222 ~~~a~~~GDAR~aidilr~A~eiAe~~~~---~~v~~~~v~~a~~~~~~~~~  270 (366)
T COG1474         222 ALVAAESGDARKAIDILRRAGEIAEREGS---RKVSEDHVREAQEEIERDVL  270 (366)
T ss_pred             HHHHHcCccHHHHHHHHHHHHHHHHhhCC---CCcCHHHHHHHHHHhhHHHH
Confidence               11112445555555444443332222   34788888888666554433

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.29  E-value=1.2e-11  Score=118.75  Aligned_cols=166  Identities=18%  Similarity=0.228  Sum_probs=120.3

Q ss_pred             CCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccc
Q 010975          209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV  285 (496)
Q Consensus       209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l  285 (496)
                      ..+.+.+.+|+|.+.+|+.|.+.......        ..|-++|||+|..|||||+|+||+.+++   +.++++|+..++
T Consensus        53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl  124 (287)
T COG2607          53 DPDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL  124 (287)
T ss_pred             CCCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence            34567899999999999999886644332        2345899999999999999999999988   677899988777


Q ss_pred             cccccCChHHHHHHHHHHhhhc-CCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc-CccccCcEEEEEeccCC
Q 010975          286 VSKWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD-GLTQSDELVFVLAATNL  363 (496)
Q Consensus       286 ~~~~~G~~e~~l~~lf~~a~~~-~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld-~~~~~~~~viVIatTn~  363 (496)
                      .         .+-.+++..+.. ..-|||+|++--     ..+       ..-...|-..++ ++..++.+|+|.||+|+
T Consensus       125 ~---------~Lp~l~~~Lr~~~~kFIlFcDDLSF-----e~g-------d~~yK~LKs~LeG~ve~rP~NVl~YATSNR  183 (287)
T COG2607         125 A---------TLPDLVELLRARPEKFILFCDDLSF-----EEG-------DDAYKALKSALEGGVEGRPANVLFYATSNR  183 (287)
T ss_pred             h---------hHHHHHHHHhcCCceEEEEecCCCC-----CCC-------chHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence            3         233344444432 235999998821     111       111123334444 45678889999999998


Q ss_pred             cccccH----------------------HHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC
Q 010975          364 PWELDA----------------------AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE  403 (496)
Q Consensus       364 p~~Ld~----------------------aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~  403 (496)
                      ...++.                      .+-+||...+.|.+++.++-..|+.++++.....
T Consensus       184 RHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~  245 (287)
T COG2607         184 RHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLD  245 (287)
T ss_pred             cccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCC
Confidence            754331                      3445999999999999999999999999776655

>PRK05642 DNA replication initiation factor; Validated

Probab=99.29  E-value=9.1e-12  Score=122.16  Aligned_cols=129  Identities=18%  Similarity=0.230  Sum_probs=87.2

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcC
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE  326 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~  326 (496)
                      +.++|+||+|+|||+|++++++++   +..+++++..++...        ...+.+....  ..+|+|||++.+.+..  
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~d~LiiDDi~~~~~~~--  113 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQ--YELVCLDDLDVIAGKA--  113 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhh--CCEEEEechhhhcCCh--
Confidence            579999999999999999999865   567888887776532        1122333332  2589999999875331  


Q ss_pred             CcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccc---ccHHHHHHhh--hhhcccCCCHHHHHHHHHhhCCCC
Q 010975          327 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQ  400 (496)
Q Consensus       327 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~---Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~~~  400 (496)
                               .....|+..++.....+. .++++++..|..   ..+.|++||.  ..+.+..|+.+++..+++..+...
T Consensus       114 ---------~~~~~Lf~l~n~~~~~g~-~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~  182 (234)
T PRK05642        114 ---------DWEEALFHLFNRLRDSGR-RLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRR  182 (234)
T ss_pred             ---------HHHHHHHHHHHHHHhcCC-EEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc
Confidence                     122345555554433333 456666655633   4689999994  556778999999999999655443

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=99.28  E-value=7.9e-12  Score=135.89  Aligned_cols=200  Identities=21%  Similarity=0.222  Sum_probs=132.2

Q ss_pred             ccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc--
Q 010975          214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--  288 (496)
Q Consensus       214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~--  288 (496)
                      ..++++|.....+++.+.+...-          ....+|||+|++||||+++|++|+...   +.+|+.++|..+...  
T Consensus       185 ~~~~iig~s~~~~~~~~~i~~~a----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~  254 (509)
T PRK05022        185 KEGEMIGQSPAMQQLKKEIEVVA----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA  254 (509)
T ss_pred             cCCceeecCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence            56789999999988888775532          233689999999999999999999876   579999999876432  


Q ss_pred             ---ccCChH----HH---HHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC--------ccc
Q 010975          289 ---WRGDSE----KL---IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG--------LTQ  350 (496)
Q Consensus       289 ---~~G~~e----~~---l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~--------~~~  350 (496)
                         ..|...    +.   ....++.+.   .++|||||||.|....             +..|+..++.        ...
T Consensus       255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~~~~-------------Q~~Ll~~l~~~~~~~~g~~~~  318 (509)
T PRK05022        255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELPLAL-------------QAKLLRVLQYGEIQRVGSDRS  318 (509)
T ss_pred             HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCCHHH-------------HHHHHHHHhcCCEeeCCCCcc
Confidence               111110    00   011344443   3799999999986442             2334444432        112


Q ss_pred             cCcEEEEEeccCCcc-------cccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccCCc
Q 010975          351 SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYS  419 (496)
Q Consensus       351 ~~~~viVIatTn~p~-------~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g~s  419 (496)
                      ....+.||++|+..-       .+.+.|..|+.. +.+..|...+|.+    ++++++.+....       ......+++
T Consensus       319 ~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~-~~i~lPpLreR~eDI~~L~~~fl~~~~~~-------~~~~~~~~s  390 (509)
T PRK05022        319 LRVDVRVIAATNRDLREEVRAGRFRADLYHRLSV-FPLSVPPLRERGDDVLLLAGYFLEQNRAR-------LGLRSLRLS  390 (509)
T ss_pred             eecceEEEEecCCCHHHHHHcCCccHHHHhcccc-cEeeCCCchhchhhHHHHHHHHHHHHHHH-------cCCCCCCCC
Confidence            223577888887652       255666667755 7788888888875    444444432111       111234688


Q ss_pred             CCchhhcchhhhccHHHHHHHHhhcccc
Q 010975          420 GSDIRLVSKEAAMQPLRRLMVLLEGRQE  447 (496)
Q Consensus       420 ~~dI~~l~~~A~~~a~rR~~~~le~~~~  447 (496)
                      +..+..|.++.|.++++++.+.++....
T Consensus       391 ~~a~~~L~~y~WPGNvrEL~~~i~ra~~  418 (509)
T PRK05022        391 PAAQAALLAYDWPGNVRELEHVISRAAL  418 (509)
T ss_pred             HHHHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence            8899999999999999999887775543

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=99.28  E-value=6.2e-12  Score=129.25  Aligned_cols=199  Identities=23%  Similarity=0.213  Sum_probs=130.3

Q ss_pred             cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc---
Q 010975          215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---  288 (496)
Q Consensus       215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~---  288 (496)
                      +++++|.+...+++.+.+.....          ....|||+|++||||+++|++++...   +.+|+.++|..+...   
T Consensus         5 ~~~liG~S~~~~~~~~~i~~~a~----------~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~   74 (326)
T PRK11608          5 KDNLLGEANSFLEVLEQVSRLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLD   74 (326)
T ss_pred             cCccEECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHH
Confidence            57899999988888887755432          23579999999999999999998766   468999999876321   


Q ss_pred             --ccCChH-------HHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------ccc
Q 010975          289 --WRGDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQS  351 (496)
Q Consensus       289 --~~G~~e-------~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~  351 (496)
                        ..|...       ......+..+.   .++|||||||.|...             ++..|+..++.-        ...
T Consensus        75 ~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~~~g~~~~~  138 (326)
T PRK11608         75 SELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAPML-------------VQEKLLRVIEYGELERVGGSQPL  138 (326)
T ss_pred             HHHccccccccCCcccccCCchhccC---CCeEEeCChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCcee
Confidence              111110       00012233333   379999999998543             223344444321        112


Q ss_pred             CcEEEEEeccCCc-------ccccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeec-ccCCc
Q 010975          352 DELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVER-TEGYS  419 (496)
Q Consensus       352 ~~~viVIatTn~p-------~~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~-t~g~s  419 (496)
                      ...+.||++|+..       ..+.+.|..||.. +.+..|...+|.+    ++++++......       .... ..+++
T Consensus       139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~-~~i~lPpLReR~eDI~~L~~~fl~~~~~~-------~~~~~~~~~s  210 (326)
T PRK11608        139 QVNVRLVCATNADLPAMVAEGKFRADLLDRLAF-DVVQLPPLRERQSDIMLMAEHFAIQMCRE-------LGLPLFPGFT  210 (326)
T ss_pred             eccEEEEEeCchhHHHHHHcCCchHHHHHhcCC-CEEECCChhhhhhhHHHHHHHHHHHHHHH-------hCCCCCCCCC
Confidence            2346778887664       2355777888855 6778888888765    444554332111       1111 24688


Q ss_pred             CCchhhcchhhhccHHHHHHHHhhcccc
Q 010975          420 GSDIRLVSKEAAMQPLRRLMVLLEGRQE  447 (496)
Q Consensus       420 ~~dI~~l~~~A~~~a~rR~~~~le~~~~  447 (496)
                      +..+..+.++.|.++++++.+.++....
T Consensus       211 ~~al~~L~~y~WPGNvrEL~~vl~~a~~  238 (326)
T PRK11608        211 ERARETLLNYRWPGNIRELKNVVERSVY  238 (326)
T ss_pred             HHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence            8899999999999999998887775543

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=99.27  E-value=1.3e-12  Score=139.52  Aligned_cols=138  Identities=15%  Similarity=0.256  Sum_probs=92.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeecccccccccCChHH---HHHHHHHHhhhcCCcceehhhHHHHH
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEK---LIKVLFELARHHAPSTIFLDEIDAII  321 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~s~l~~~~~G~~e~---~l~~lf~~a~~~~p~ILfIDEID~L~  321 (496)
                      ++++|+|++|+|||+|++++++++     +..++++++.++...+......   .+..+.+..  ..+.+|+|||++.+.
T Consensus       142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~  219 (450)
T PRK14087        142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLS  219 (450)
T ss_pred             CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEecccccc
Confidence            579999999999999999999965     4678889888876655433221   122222222  245699999999875


Q ss_pred             hhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc---cccHHHHHHhh--hhhcccCCCHHHHHHHHHhh
Q 010975          322 SQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW---ELDAAMLRRLE--KRILVPLPDTEARRAMFESL  396 (496)
Q Consensus       322 ~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~---~Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~  396 (496)
                      ++           ....+.|+..++.....+. .+|+++...|.   .+++.|.+||.  ..+.+..|+.++|.+|++..
T Consensus       220 ~k-----------~~~~e~lf~l~N~~~~~~k-~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~  287 (450)
T PRK14087        220 YK-----------EKTNEIFFTIFNNFIENDK-QLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE  287 (450)
T ss_pred             CC-----------HHHHHHHHHHHHHHHHcCC-cEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence            33           1123345555544433343 33444444453   36789999995  55678889999999999998


Q ss_pred             CCCCC
Q 010975          397 LPSQT  401 (496)
Q Consensus       397 l~~~~  401 (496)
                      +...+
T Consensus       288 ~~~~g  292 (450)
T PRK14087        288 IKNQN  292 (450)
T ss_pred             HHhcC
Confidence            87654

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=99.26  E-value=8.5e-12  Score=128.54  Aligned_cols=162  Identities=20%  Similarity=0.269  Sum_probs=103.6

Q ss_pred             CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc-------ceeeeee--
Q 010975          211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-------TTFFNIS--  281 (496)
Q Consensus       211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~-------~~~i~v~--  281 (496)
                      +...|++|+|++++|..|.-.+..|.            ..++||.||+|||||++||++++.+.       .+|..-.  
T Consensus        12 ~~~pf~~ivGq~~~k~al~~~~~~p~------------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~   79 (350)
T CHL00081         12 PVFPFTAIVGQEEMKLALILNVIDPK------------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD   79 (350)
T ss_pred             CCCCHHHHhChHHHHHHHHHhccCCC------------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence            45579999999999999998776643            26899999999999999999988762       1221000  


Q ss_pred             ----ccccccc---------------c----cCChHHH------HHHHHHHhh---------hcCCcceehhhHHHHHhh
Q 010975          282 ----ASSVVSK---------------W----RGDSEKL------IKVLFELAR---------HHAPSTIFLDEIDAIISQ  323 (496)
Q Consensus       282 ----~s~l~~~---------------~----~G~~e~~------l~~lf~~a~---------~~~p~ILfIDEID~L~~~  323 (496)
                          ++.+.+.               +    .|.++..      +...+....         ....++|||||++.+.+.
T Consensus        80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~  159 (350)
T CHL00081         80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDH  159 (350)
T ss_pred             hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHH
Confidence                0000000               0    0112221      111111110         112379999999998543


Q ss_pred             hcCCcchhHHhhhhhhhhhhhccC---------cc-ccCcEEEEEeccCCcc-cccHHHHHHhhhhhcccCCC-HHHHHH
Q 010975          324 RGEARSEHEASRRLKTELLIQMDG---------LT-QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLPD-TEARRA  391 (496)
Q Consensus       324 r~~~~~~~~~~~~i~~~Ll~~ld~---------~~-~~~~~viVIatTn~p~-~Ld~aL~rRf~~~I~~~~P~-~eeR~~  391 (496)
                                   ++..|+..|+.         .. ..+.++++|+|.|..+ .+.+++.+||...+.+..|+ .+++.+
T Consensus       160 -------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~  226 (350)
T CHL00081        160 -------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVK  226 (350)
T ss_pred             -------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHH
Confidence                         23345554432         11 1234577777777654 59999999999999999997 599999


Q ss_pred             HHHhhC
Q 010975          392 MFESLL  397 (496)
Q Consensus       392 Il~~~l  397 (496)
                      |++...
T Consensus       227 il~~~~  232 (350)
T CHL00081        227 IVEQRT  232 (350)
T ss_pred             HHHhhh
Confidence            998864

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=99.26  E-value=5e-12  Score=137.23  Aligned_cols=215  Identities=20%  Similarity=0.245  Sum_probs=135.5

Q ss_pred             CccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc-
Q 010975          213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK-  288 (496)
Q Consensus       213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~-  288 (496)
                      ..|++++|.....+++.+.+...-.          ...+|||+|++||||+++|++|++..   +.||+.++|..+... 
T Consensus       209 ~~f~~iiG~S~~m~~~~~~i~~~A~----------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l  278 (526)
T TIGR02329       209 YRLDDLLGASAPMEQVRALVRLYAR----------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL  278 (526)
T ss_pred             cchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence            5688999999988888887744322          23589999999999999999999865   679999999876432 


Q ss_pred             ----ccCC----hHH----HHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------
Q 010975          289 ----WRGD----SEK----LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------  348 (496)
Q Consensus       289 ----~~G~----~e~----~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------  348 (496)
                          ..|.    +..    ....+|+.+..   ++||||||+.|...             ++..|+..++.-        
T Consensus       279 leseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~~-------------~Q~~Ll~~L~~~~~~r~g~~  342 (526)
T TIGR02329       279 LEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMPLP-------------LQTRLLRVLEEREVVRVGGT  342 (526)
T ss_pred             HHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCCHH-------------HHHHHHHHHhcCcEEecCCC
Confidence                1111    111    11234444443   79999999998544             223344444321        


Q ss_pred             cccCcEEEEEeccCCcc--c-----ccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccC
Q 010975          349 TQSDELVFVLAATNLPW--E-----LDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEG  417 (496)
Q Consensus       349 ~~~~~~viVIatTn~p~--~-----Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g  417 (496)
                      ......+.+|++|+..-  .     +.+.|..|+.. +.+..|...+|.+    ++++++........          -+
T Consensus       343 ~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~-~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~----------~~  411 (526)
T TIGR02329       343 EPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSI-LRIALPPLRERPGDILPLAAEYLVQAAAALR----------LP  411 (526)
T ss_pred             ceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCC-cEEeCCCchhchhHHHHHHHHHHHHHHHHcC----------CC
Confidence            11223457888887662  1     33344446644 7778888888775    45555544321111          13


Q ss_pred             CcCCchhh-------cchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHH
Q 010975          418 YSGSDIRL-------VSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEI  467 (496)
Q Consensus       418 ~s~~dI~~-------l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~  467 (496)
                      +++..+..       |.++.|.+++|++.+.++..........   ...|+.+|+..
T Consensus       412 ~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~---~~~I~~~~l~~  465 (526)
T TIGR02329       412 DSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMP---AGALTPDVLRA  465 (526)
T ss_pred             CCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCC---CCccCHHHhhh
Confidence            55566666       9999999999999988876544322100   12367777643

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=99.24  E-value=9.7e-12  Score=135.43  Aligned_cols=204  Identities=20%  Similarity=0.224  Sum_probs=130.9

Q ss_pred             CCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccc
Q 010975          210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV  286 (496)
Q Consensus       210 ~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~  286 (496)
                      .....|++++|.....+++.+.+.....          ....|||+|++||||+++|++++...   +.+|+.++|..+.
T Consensus       198 ~~~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~  267 (520)
T PRK10820        198 NDDSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP  267 (520)
T ss_pred             cccccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence            4567899999999877777766643221          23579999999999999999998765   4689999998764


Q ss_pred             cc-----ccCChH-------HHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc------
Q 010975          287 SK-----WRGDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL------  348 (496)
Q Consensus       287 ~~-----~~G~~e-------~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~------  348 (496)
                      ..     ..|...       .....+|+.+..   ++|||||||.|....             +..|+..++.-      
T Consensus       268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~---GtL~LdeI~~L~~~~-------------Q~~Ll~~l~~~~~~~~g  331 (520)
T PRK10820        268 DDVVESELFGHAPGAYPNALEGKKGFFEQANG---GSVLLDEIGEMSPRM-------------QAKLLRFLNDGTFRRVG  331 (520)
T ss_pred             HHHHHHHhcCCCCCCcCCcccCCCChhhhcCC---CEEEEeChhhCCHHH-------------HHHHHHHHhcCCcccCC
Confidence            32     111110       001123444443   799999999985442             23344444321      


Q ss_pred             --cccCcEEEEEeccCCc-c------cccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecc
Q 010975          349 --TQSDELVFVLAATNLP-W------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERT  415 (496)
Q Consensus       349 --~~~~~~viVIatTn~p-~------~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t  415 (496)
                        ......+.||++|+.+ .      .+.+.|..|+.. +.+..|...+|.+    ++++++.......+       ...
T Consensus       332 ~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~-~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g-------~~~  403 (520)
T PRK10820        332 EDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNV-LTLNLPPLRDRPQDIMPLTELFVARFADEQG-------VPR  403 (520)
T ss_pred             CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCe-eEEeCCCcccChhHHHHHHHHHHHHHHHHcC-------CCC
Confidence              1122356788887665 2      245667778865 7788888877774    34444433211111       112


Q ss_pred             cCCcCCchhhcchhhhccHHHHHHHHhhcccc
Q 010975          416 EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE  447 (496)
Q Consensus       416 ~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~  447 (496)
                      .++++..+..|.++.|.++++++.+.++....
T Consensus       404 ~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~  435 (520)
T PRK10820        404 PKLAADLNTVLTRYGWPGNVRQLKNAIYRALT  435 (520)
T ss_pred             CCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            35777888899999999999998887765543

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=99.24  E-value=8.2e-12  Score=138.92  Aligned_cols=156  Identities=23%  Similarity=0.302  Sum_probs=104.1

Q ss_pred             ccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh--------------------
Q 010975          214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC--------------------  273 (496)
Q Consensus       214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l--------------------  273 (496)
                      .|.+|+|++.+|..|.-....+.            ..+|||.|+||||||++|+++++.+                    
T Consensus         2 pf~~ivGq~~~~~al~~~av~~~------------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~   69 (633)
T TIGR02442         2 PFTAIVGQEDLKLALLLNAVDPR------------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE   69 (633)
T ss_pred             CcchhcChHHHHHHHHHHhhCCC------------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence            37899999999988876665432            1579999999999999999999887                    


Q ss_pred             ---------------cceeeeeecccccccccCCh--HHHHH--------HHHHHhhhcCCcceehhhHHHHHhhhcCCc
Q 010975          274 ---------------KTTFFNISASSVVSKWRGDS--EKLIK--------VLFELARHHAPSTIFLDEIDAIISQRGEAR  328 (496)
Q Consensus       274 ---------------~~~~i~v~~s~l~~~~~G~~--e~~l~--------~lf~~a~~~~p~ILfIDEID~L~~~r~~~~  328 (496)
                                     ..+|+.+.++.......|..  +..+.        .++..+   ..+|||||||+.+...     
T Consensus        70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~~~-----  141 (633)
T TIGR02442        70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLDDH-----  141 (633)
T ss_pred             cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCCHH-----
Confidence                           24666665554333333321  11110        111122   2269999999998533     


Q ss_pred             chhHHhhhhhhhhhhhccCc----------cccCcEEEEEeccCCc-ccccHHHHHHhhhhhcccCC-CHHHHHHHHHhh
Q 010975          329 SEHEASRRLKTELLIQMDGL----------TQSDELVFVLAATNLP-WELDAAMLRRLEKRILVPLP-DTEARRAMFESL  396 (496)
Q Consensus       329 ~~~~~~~~i~~~Ll~~ld~~----------~~~~~~viVIatTn~p-~~Ld~aL~rRf~~~I~~~~P-~~eeR~~Il~~~  396 (496)
                              +++.|+..|+.-          ......+++|+|+|.. ..+.++|++||...+.++.+ +.+++.++++..
T Consensus       142 --------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~  213 (633)
T TIGR02442       142 --------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRR  213 (633)
T ss_pred             --------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHH
Confidence                    344555555421          1122357888888854 35889999999988888876 467788888764


Q ss_pred             C
Q 010975          397 L  397 (496)
Q Consensus       397 l  397 (496)
                      +
T Consensus       214 ~  214 (633)
T TIGR02442       214 L  214 (633)
T ss_pred             H
Confidence            4

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=1.3e-11  Score=136.91  Aligned_cols=168  Identities=23%  Similarity=0.269  Sum_probs=121.2

Q ss_pred             chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc---ceeeeeeccccccc----
Q 010975          216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSK----  288 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~s~l~~~----  288 (496)
                      +.|+|++++...+...+.....   -.....+|..++||.||+|+|||-||+++|..+.   ..++++++|++..+    
T Consensus       491 ~rViGQd~AV~avs~aIrraRa---GL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVS  567 (786)
T COG0542         491 KRVIGQDEAVEAVSDAIRRARA---GLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVS  567 (786)
T ss_pred             cceeChHHHHHHHHHHHHHHhc---CCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHH
Confidence            3589999999999988854321   1111123445789999999999999999999995   78999999988643    


Q ss_pred             -ccCChHHHH-----HHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------cccCcE
Q 010975          289 -WRGDSEKLI-----KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSDEL  354 (496)
Q Consensus       289 -~~G~~e~~l-----~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~~~~  354 (496)
                       .+|..++.+     ..+.+..+.++++||++|||++-.+             .+.+-||+.+|.-        .-.-.+
T Consensus       568 rLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHp-------------dV~nilLQVlDdGrLTD~~Gr~VdFrN  634 (786)
T COG0542         568 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHP-------------DVFNLLLQVLDDGRLTDGQGRTVDFRN  634 (786)
T ss_pred             HHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCH-------------HHHHHHHHHhcCCeeecCCCCEEecce
Confidence             223322222     2355666677779999999988643             4667788888732        122346


Q ss_pred             EEEEeccCCcc----------------------------cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCC
Q 010975          355 VFVLAATNLPW----------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS  399 (496)
Q Consensus       355 viVIatTn~p~----------------------------~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~  399 (496)
                      .+||+|||--.                            ...|.++.|++.+|.|.+.+.+...+|+...+..
T Consensus       635 tiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~  707 (786)
T COG0542         635 TIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR  707 (786)
T ss_pred             eEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence            88999997331                            0446777799999999999999999998887643

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=99.23  E-value=2.2e-11  Score=126.98  Aligned_cols=141  Identities=20%  Similarity=0.337  Sum_probs=98.8

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ  323 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~  323 (496)
                      .+.++||||+|.|||+|++|++++.     +..+++++...+..+++.+....-..-|++-.  +-.+++||||+.+.++
T Consensus       113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk  190 (408)
T COG0593         113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK  190 (408)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence            3679999999999999999999988     45688888777765554333222223344333  3369999999999765


Q ss_pred             hcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccc---ccHHHHHHhh--hhhcccCCCHHHHHHHHHhhCC
Q 010975          324 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLP  398 (496)
Q Consensus       324 r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~---Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~  398 (496)
                      .           +...+++..++.+...+. .+|+++...|.+   +.+.|++||.  .++.+.+|+.+.|..|++....
T Consensus       191 ~-----------~~qeefFh~FN~l~~~~k-qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~  258 (408)
T COG0593         191 E-----------RTQEEFFHTFNALLENGK-QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE  258 (408)
T ss_pred             h-----------hHHHHHHHHHHHHHhcCC-EEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence            2           234556665555544555 446656666654   5589999996  4567788999999999999766


Q ss_pred             CCCCC
Q 010975          399 SQTGE  403 (496)
Q Consensus       399 ~~~~~  403 (496)
                      .....
T Consensus       259 ~~~~~  263 (408)
T COG0593         259 DRGIE  263 (408)
T ss_pred             hcCCC
Confidence            55554

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=99.22  E-value=2.1e-12  Score=123.10  Aligned_cols=45  Identities=47%  Similarity=0.660  Sum_probs=37.8

Q ss_pred             cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      |+||+|++.+|+.|.-...-              ..|+||+||||||||++|+.+...+
T Consensus         2 f~dI~GQe~aKrAL~iAAaG--------------~h~lLl~GppGtGKTmlA~~l~~lL   46 (206)
T PF01078_consen    2 FSDIVGQEEAKRALEIAAAG--------------GHHLLLIGPPGTGKTMLARRLPSLL   46 (206)
T ss_dssp             TCCSSSTHHHHHHHHHHHHC--------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred             hhhhcCcHHHHHHHHHHHcC--------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence            78999999999999877643              2689999999999999999999977

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PRK06620 hypothetical protein; Validated

Probab=99.22  E-value=3.5e-11  Score=116.47  Aligned_cols=147  Identities=16%  Similarity=0.226  Sum_probs=89.3

Q ss_pred             CCCCccchhh-cc--hHHHHHHhhhhcccccCccccccccCc-cceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975          210 SPDVKWESIK-GL--ENAKRLLKEAVVMPIKYPKYFTGLLSP-WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV  285 (496)
Q Consensus       210 ~~~~~l~dli-G~--e~vk~~L~e~l~~~~~~~~~~~~~~~~-~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l  285 (496)
                      .+..+|++++ |.  +.+...+.++...+-         ..+ .+.++||||||+|||+|++++++..+..++.  ....
T Consensus        10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~~---------~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~   78 (214)
T PRK06620         10 SSKYHPDEFIVSSSNDQAYNIIKNWQCGFG---------VNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF   78 (214)
T ss_pred             CCCCCchhhEecccHHHHHHHHHHHHHccc---------cCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh
Confidence            3556688744 43  234455554432110         112 2679999999999999999999988753322  1110


Q ss_pred             cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc
Q 010975          286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW  365 (496)
Q Consensus       286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~  365 (496)
                                 ....+    . ...+|+|||||.+.             .   ..|+..++.+...+. .++++++..|.
T Consensus        79 -----------~~~~~----~-~~d~lliDdi~~~~-------------~---~~lf~l~N~~~e~g~-~ilits~~~p~  125 (214)
T PRK06620         79 -----------NEEIL----E-KYNAFIIEDIENWQ-------------E---PALLHIFNIINEKQK-YLLLTSSDKSR  125 (214)
T ss_pred             -----------chhHH----h-cCCEEEEeccccch-------------H---HHHHHHHHHHHhcCC-EEEEEcCCCcc
Confidence                       01111    1 22699999998541             0   123333333333444 45666665554


Q ss_pred             c--ccHHHHHHhhh--hhcccCCCHHHHHHHHHhhCCCCC
Q 010975          366 E--LDAAMLRRLEK--RILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       366 ~--Ld~aL~rRf~~--~I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                      .  + ++|++|+..  ++.+..|+.+++..+++..+....
T Consensus       126 ~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~  164 (214)
T PRK06620        126 NFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS  164 (214)
T ss_pred             ccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence            3  6 889999962  488899999999999988876543

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=99.21  E-value=1.9e-11  Score=137.51  Aligned_cols=200  Identities=23%  Similarity=0.302  Sum_probs=131.0

Q ss_pred             CCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc
Q 010975          212 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK  288 (496)
Q Consensus       212 ~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~  288 (496)
                      +..|++++|.....+.+.+.+.....          ...+|||+|++|||||++|++|+...   +.+|+.++|..+...
T Consensus       372 n~~~~~liG~S~~~~~~~~~~~~~a~----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~  441 (686)
T PRK15429        372 DSEFGEIIGRSEAMYSVLKQVEMVAQ----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG  441 (686)
T ss_pred             cccccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence            35678999999998888877754322          23579999999999999999999866   679999999876322


Q ss_pred             -----ccCC--------hHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC--------
Q 010975          289 -----WRGD--------SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG--------  347 (496)
Q Consensus       289 -----~~G~--------~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~--------  347 (496)
                           ..|.        ..... ..++.+.   .++||||||+.+...             ++..|+..++.        
T Consensus       442 ~~~~~lfg~~~~~~~g~~~~~~-g~le~a~---~GtL~Ldei~~L~~~-------------~Q~~L~~~l~~~~~~~~g~  504 (686)
T PRK15429        442 LLESDLFGHERGAFTGASAQRI-GRFELAD---KSSLFLDEVGDMPLE-------------LQPKLLRVLQEQEFERLGS  504 (686)
T ss_pred             HhhhhhcCcccccccccccchh-hHHHhcC---CCeEEEechhhCCHH-------------HHHHHHHHHHhCCEEeCCC
Confidence                 1121        11111 2344443   389999999998543             22334444432        


Q ss_pred             ccccCcEEEEEeccCCcc-------cccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeeccc
Q 010975          348 LTQSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTE  416 (496)
Q Consensus       348 ~~~~~~~viVIatTn~p~-------~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~  416 (496)
                      .......+.+|++|+..-       .+...+..|+.. +.+..|...+|.+    ++++++.+....       ..+...
T Consensus       505 ~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~-~~i~lPpLreR~~Di~~L~~~~l~~~~~~-------~~~~~~  576 (686)
T PRK15429        505 NKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV-FPIHLPPLRERPEDIPLLVKAFTFKIARR-------MGRNID  576 (686)
T ss_pred             CCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCe-eEEeCCChhhhHhHHHHHHHHHHHHHHHH-------cCCCCC
Confidence            112234577888887652       233445556644 6788898888876    445554432211       112234


Q ss_pred             CCcCCchhhcchhhhccHHHHHHHHhhccc
Q 010975          417 GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQ  446 (496)
Q Consensus       417 g~s~~dI~~l~~~A~~~a~rR~~~~le~~~  446 (496)
                      ++++..++.|.+..|.++++++.+.++...
T Consensus       577 ~~s~~al~~L~~y~WPGNvrEL~~~i~~a~  606 (686)
T PRK15429        577 SIPAETLRTLSNMEWPGNVRELENVIERAV  606 (686)
T ss_pred             CcCHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence            578888999999999999999888776554

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=99.21  E-value=2.6e-11  Score=123.91  Aligned_cols=152  Identities=15%  Similarity=0.184  Sum_probs=105.9

Q ss_pred             ccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce--------eeeeecccc
Q 010975          214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------FFNISASSV  285 (496)
Q Consensus       214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~--------~i~v~~s~l  285 (496)
                      +|++++|++.+++.|...+...           ..++.+||+||+|+|||++|+++|+.+.+.        +..+...  
T Consensus         2 ~~~~i~g~~~~~~~l~~~~~~~-----------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~--   68 (313)
T PRK05564          2 SFHTIIGHENIKNRIKNSIIKN-----------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI--   68 (313)
T ss_pred             ChhhccCcHHHHHHHHHHHHcC-----------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--
Confidence            4899999999999999887432           223568999999999999999999987332        2222211  


Q ss_pred             cccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEecc
Q 010975          286 VSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT  361 (496)
Q Consensus       286 ~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatT  361 (496)
                      .+..  -.-..++.+.+.+..    ....|++||++|.+..             ...+.|+..++.   .+..+++|.+|
T Consensus        69 ~~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~-------------~a~naLLK~LEe---pp~~t~~il~~  130 (313)
T PRK05564         69 NKKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE-------------QAQNAFLKTIEE---PPKGVFIILLC  130 (313)
T ss_pred             cCCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH-------------HHHHHHHHHhcC---CCCCeEEEEEe
Confidence            0111  122345665554332    2345999999998832             234678888873   33445555566


Q ss_pred             CCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhC
Q 010975          362 NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL  397 (496)
Q Consensus       362 n~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l  397 (496)
                      +.++.+.+++++|+. .+.++.|+.++....++...
T Consensus       131 ~~~~~ll~TI~SRc~-~~~~~~~~~~~~~~~l~~~~  165 (313)
T PRK05564        131 ENLEQILDTIKSRCQ-IYKLNRLSKEEIEKFISYKY  165 (313)
T ss_pred             CChHhCcHHHHhhce-eeeCCCcCHHHHHHHHHHHh
Confidence            788899999999996 59999999999888877654

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=99.21  E-value=1.6e-11  Score=137.17  Aligned_cols=218  Identities=19%  Similarity=0.197  Sum_probs=137.1

Q ss_pred             CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccc
Q 010975          211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS  287 (496)
Q Consensus       211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~  287 (496)
                      +...|++++|.+...+++.+.+.....          ....|||+|++||||+++|++|++..   +.+|+.++|..+..
T Consensus       320 ~~~~~~~l~g~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~  389 (638)
T PRK11388        320 VSHTFDHMPQDSPQMRRLIHFGRQAAK----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD  389 (638)
T ss_pred             ccccccceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence            345699999999888888776654332          23579999999999999999999876   47999999987632


Q ss_pred             -----cccCCh----HHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------cc
Q 010975          288 -----KWRGDS----EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQ  350 (496)
Q Consensus       288 -----~~~G~~----e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~  350 (496)
                           +..|..    .......|+.+   ..++||||||+.|...             ++..|+..++.-        ..
T Consensus       390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~~~~~~  453 (638)
T PRK11388        390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSPE-------------LQSALLQVLKTGVITRLDSRRL  453 (638)
T ss_pred             HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCce
Confidence                 122211    00000123333   2479999999998544             223344444321        11


Q ss_pred             cCcEEEEEeccCCcc-------cccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccCCc
Q 010975          351 SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYS  419 (496)
Q Consensus       351 ~~~~viVIatTn~p~-------~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g~s  419 (496)
                      ..-.+.+|+||+..-       .+.+.|.-|+.. +.+..|...+|.+    ++++++.......       ... -+++
T Consensus       454 ~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~-~~i~lPpLreR~~Di~~L~~~~l~~~~~~~-------~~~-~~~s  524 (638)
T PRK11388        454 IPVDVRVIATTTADLAMLVEQNRFSRQLYYALHA-FEITIPPLRMRREDIPALVNNKLRSLEKRF-------STR-LKID  524 (638)
T ss_pred             EEeeEEEEEeccCCHHHHHhcCCChHHHhhhhce-eEEeCCChhhhhhHHHHHHHHHHHHHHHHh-------CCC-CCcC
Confidence            122577888887652       244455557754 7788888888864    4445544321110       011 2477


Q ss_pred             CCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHh
Q 010975          420 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL  469 (496)
Q Consensus       420 ~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al  469 (496)
                      +..+..|.+..|.+++|++.+.++......+..      .|+.+|+...+
T Consensus       525 ~~a~~~L~~y~WPGNvreL~~~l~~~~~~~~~~------~i~~~~lp~~~  568 (638)
T PRK11388        525 DDALARLVSYRWPGNDFELRSVIENLALSSDNG------RIRLSDLPEHL  568 (638)
T ss_pred             HHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCC------eecHHHCchhh
Confidence            888999999999999999988887654332221      25555554443

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=99.20  E-value=1.6e-11  Score=124.82  Aligned_cols=142  Identities=16%  Similarity=0.169  Sum_probs=93.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc--ccCChHHH----------HHHHHHHhhhcCCcceehhhH
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK--WRGDSEKL----------IKVLFELARHHAPSTIFLDEI  317 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~--~~G~~e~~----------l~~lf~~a~~~~p~ILfIDEI  317 (496)
                      +++||.||||||||++++.+|..++.+++.++++.....  ..|...-.          ....+..|.. .+.+|++||+
T Consensus        65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEi  143 (327)
T TIGR01650        65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEY  143 (327)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechh
Confidence            689999999999999999999999999999988655443  34432110          1112333333 3478999999


Q ss_pred             HHHHhhhcCCcchhHHhhhhhhh--hhhhcc--CccccCcEEEEEeccCCcc------------cccHHHHHHhhhhhcc
Q 010975          318 DAIISQRGEARSEHEASRRLKTE--LLIQMD--GLTQSDELVFVLAATNLPW------------ELDAAMLRRLEKRILV  381 (496)
Q Consensus       318 D~L~~~r~~~~~~~~~~~~i~~~--Ll~~ld--~~~~~~~~viVIatTn~p~------------~Ld~aL~rRf~~~I~~  381 (496)
                      |...++-.      .....+++.  .+...+  ........+.||||+|...            .+++++++||...+.+
T Consensus       144 n~a~p~~~------~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~  217 (327)
T TIGR01650       144 DAGRPDVM------FVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTL  217 (327)
T ss_pred             hccCHHHH------HHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeC
Confidence            98743311      111111110  111111  1111223577899999753            3789999999877899


Q ss_pred             cCCCHHHHHHHHHhhCC
Q 010975          382 PLPDTEARRAMFESLLP  398 (496)
Q Consensus       382 ~~P~~eeR~~Il~~~l~  398 (496)
                      ++|+.++-.+|+.....
T Consensus       218 ~Yp~~e~E~~Il~~~~~  234 (327)
T TIGR01650       218 NYLEHDNEAAIVLAKAK  234 (327)
T ss_pred             CCCCHHHHHHHHHhhcc
Confidence            99999999999887643

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=99.20  E-value=3e-11  Score=125.17  Aligned_cols=159  Identities=14%  Similarity=0.134  Sum_probs=107.1

Q ss_pred             CCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce-------ee-eee
Q 010975          210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-------FF-NIS  281 (496)
Q Consensus       210 ~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~-------~i-~v~  281 (496)
                      ..+..+++++|++++++.|...+....           .++.+||+||+|+|||++|+.+|+.+...       .. ...
T Consensus        17 ~~P~~~~~l~Gh~~a~~~L~~a~~~gr-----------l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~   85 (351)
T PRK09112         17 PSPSENTRLFGHEEAEAFLAQAYREGK-----------LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP   85 (351)
T ss_pred             CCCCchhhccCcHHHHHHHHHHHHcCC-----------CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence            456678999999999999999885432           23569999999999999999999988441       10 001


Q ss_pred             c---c-----------ccc---cc--cc------CChHHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCcchhH
Q 010975          282 A---S-----------SVV---SK--WR------GDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHE  332 (496)
Q Consensus       282 ~---s-----------~l~---~~--~~------G~~e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~~~~~  332 (496)
                      +   .           ++.   ..  ..      .-.-..++.+.+...    .....|++|||+|.|...         
T Consensus        86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~---------  156 (351)
T PRK09112         86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN---------  156 (351)
T ss_pred             CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH---------
Confidence            1   0           000   00  00      001233444333322    234469999999998422         


Q ss_pred             HhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhh
Q 010975          333 ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL  396 (496)
Q Consensus       333 ~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~  396 (496)
                          ..+.|++.++..   +..+++|..|+.++.+.+.+++|+. .+.+++|+.++...+++..
T Consensus       157 ----aanaLLk~LEEp---p~~~~fiLit~~~~~llptIrSRc~-~i~l~pl~~~~~~~~L~~~  212 (351)
T PRK09112        157 ----AANAILKTLEEP---PARALFILISHSSGRLLPTIRSRCQ-PISLKPLDDDELKKALSHL  212 (351)
T ss_pred             ----HHHHHHHHHhcC---CCCceEEEEECChhhccHHHHhhcc-EEEecCCCHHHHHHHHHHh
Confidence                235688888742   2334455556778888899999995 6999999999999999874

>PHA02244 ATPase-like protein

Probab=99.20  E-value=3.1e-11  Score=124.21  Aligned_cols=133  Identities=22%  Similarity=0.242  Sum_probs=82.2

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc----cccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS----SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR  324 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s----~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r  324 (496)
                      ..++||+||||||||++|+++|..++.+++.++..    .+.+ +..........-+-.+. ...++|+|||++.+.+..
T Consensus       119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p~v  196 (383)
T PHA02244        119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAF-KKGGLFFIDEIDASIPEA  196 (383)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHh-hcCCEEEEeCcCcCCHHH
Confidence            35799999999999999999999999999998742    1111 11111011111122222 234799999999765432


Q ss_pred             cCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc-----------ccccHHHHHHhhhhhcccCCCHHHH
Q 010975          325 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-----------WELDAAMLRRLEKRILVPLPDTEAR  389 (496)
Q Consensus       325 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p-----------~~Ld~aL~rRf~~~I~~~~P~~eeR  389 (496)
                      ..     .....+...++...++.......+.+|+|+|.+           ..+++++++||. .+.+++|+..|.
T Consensus       197 q~-----~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv-~I~~dyp~~~E~  266 (383)
T PHA02244        197 LI-----IINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFA-PIEFDYDEKIEH  266 (383)
T ss_pred             HH-----HHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcE-EeeCCCCcHHHH
Confidence            11     111111122333444433334457889999974           358999999995 599999984443

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=99.18  E-value=1.2e-11  Score=128.75  Aligned_cols=208  Identities=22%  Similarity=0.269  Sum_probs=129.2

Q ss_pred             CccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeeccccccc
Q 010975          213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK  288 (496)
Q Consensus       213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~s~l~~~  288 (496)
                      ..+++++|.+...+++.+.+...          .+...+||++|++||||+.+|+.|+...    +.||+.+||+.+...
T Consensus        75 ~~~~~LIG~~~~~~~~~eqik~~----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en  144 (403)
T COG1221          75 EALDDLIGESPSLQELREQIKAY----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSEN  144 (403)
T ss_pred             hhhhhhhccCHHHHHHHHHHHhh----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcC
Confidence            34789999998888888877541          1334689999999999999999998644    568999999776542


Q ss_pred             cc---------CC---hHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEE
Q 010975          289 WR---------GD---SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF  356 (496)
Q Consensus       289 ~~---------G~---~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi  356 (496)
                      ..         |.   ....-..+|+.|..   ++||+|||+.|.+..+     ....+.+.+.-+..+.+-......|.
T Consensus       145 ~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~LP~~~Q-----~kLl~~le~g~~~rvG~~~~~~~dVR  216 (403)
T COG1221         145 LQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRLPPEGQ-----EKLLRVLEEGEYRRVGGSQPRPVDVR  216 (403)
T ss_pred             HHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhCCHhHH-----HHHHHHHHcCceEecCCCCCcCCCce
Confidence            11         11   11222346666665   7999999999864421     11112222222223333333455688


Q ss_pred             EEeccCCc--ccccH--HHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcch
Q 010975          357 VLAATNLP--WELDA--AMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSK  428 (496)
Q Consensus       357 VIatTn~p--~~Ld~--aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~  428 (496)
                      +|++|+..  +.+-.  .+.+|.. .+.+..|+.+||..    ++++++.......+.++       ...++..++.+..
T Consensus       217 li~AT~~~l~~~~~~g~dl~~rl~-~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~-------~~~~~~a~~~L~~  288 (403)
T COG1221         217 LICATTEDLEEAVLAGADLTRRLN-ILTITLPPLRERKEDILLLAEHFLKSEARRLGLPL-------SVDSPEALRALLA  288 (403)
T ss_pred             eeeccccCHHHHHHhhcchhhhhc-CceecCCChhhchhhHHHHHHHHHHHHHHHcCCCC-------CCCCHHHHHHHHh
Confidence            88888754  23333  5555442 26666777777654    55555544433322211       1122456788888


Q ss_pred             hhhccHHHHHHHHhhccc
Q 010975          429 EAAMQPLRRLMVLLEGRQ  446 (496)
Q Consensus       429 ~A~~~a~rR~~~~le~~~  446 (496)
                      +.+.+++|++.+.++..-
T Consensus       289 y~~pGNirELkN~Ve~~~  306 (403)
T COG1221         289 YDWPGNIRELKNLVERAV  306 (403)
T ss_pred             CCCCCcHHHHHHHHHHHH
Confidence            999999999888776553

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=99.18  E-value=4.4e-11  Score=123.06  Aligned_cols=156  Identities=21%  Similarity=0.290  Sum_probs=99.4

Q ss_pred             ccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-------cceee--------
Q 010975          214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFF--------  278 (496)
Q Consensus       214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-------~~~~i--------  278 (496)
                      .|..|+|++++|..|.-.+..|.            ..+++|.|+||+|||+++++++..+       +.++-        
T Consensus         2 pf~~ivgq~~~~~al~~~~~~~~------------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (337)
T TIGR02030         2 PFTAIVGQDEMKLALLLNVIDPK------------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM   69 (337)
T ss_pred             CccccccHHHHHHHHHHHhcCCC------------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence            37899999999999876665432            2689999999999999999999876       22221        


Q ss_pred             -------------------------eeecccccccccCCh--HHHHH--------HHHHHhhhcCCcceehhhHHHHHhh
Q 010975          279 -------------------------NISASSVVSKWRGDS--EKLIK--------VLFELARHHAPSTIFLDEIDAIISQ  323 (496)
Q Consensus       279 -------------------------~v~~s~l~~~~~G~~--e~~l~--------~lf~~a~~~~p~ILfIDEID~L~~~  323 (496)
                                               .+..+...+...|..  +..+.        .++.++   ..++|||||++.+...
T Consensus        70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L~~~  146 (337)
T TIGR02030        70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLLEDH  146 (337)
T ss_pred             cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhCCHH
Confidence                                     100000001112211  01000        111222   2379999999987433


Q ss_pred             hcCCcchhHHhhhhhhhhhhhccC---------cc-ccCcEEEEEeccCCcc-cccHHHHHHhhhhhcccCCCH-HHHHH
Q 010975          324 RGEARSEHEASRRLKTELLIQMDG---------LT-QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLPDT-EARRA  391 (496)
Q Consensus       324 r~~~~~~~~~~~~i~~~Ll~~ld~---------~~-~~~~~viVIatTn~p~-~Ld~aL~rRf~~~I~~~~P~~-eeR~~  391 (496)
                                   ++..|+..|+.         .. ..+.++++++|.|..+ .+++++++||...+.++.|+. ++|.+
T Consensus       147 -------------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~e  213 (337)
T TIGR02030       147 -------------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVE  213 (337)
T ss_pred             -------------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHH
Confidence                         33444444432         11 1234577888877654 699999999999999999875 88999


Q ss_pred             HHHhhC
Q 010975          392 MFESLL  397 (496)
Q Consensus       392 Il~~~l  397 (496)
                      |++...
T Consensus       214 IL~~~~  219 (337)
T TIGR02030       214 IVERRT  219 (337)
T ss_pred             HHHhhh
Confidence            998753

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=99.17  E-value=4e-11  Score=122.00  Aligned_cols=149  Identities=21%  Similarity=0.260  Sum_probs=104.6

Q ss_pred             hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc----------------------
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK----------------------  274 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~----------------------  274 (496)
                      +++|.+.+..++........+          .+..+||+||||+|||++|.++|+++.                      
T Consensus         2 ~~~~~~~~~~~l~~~~~~~~~----------~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~   71 (325)
T COG0470           2 ELVPWQEAVKRLLVQALESGR----------LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG   71 (325)
T ss_pred             CcccchhHHHHHHHHHHhcCC----------CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence            577888888887777653221          123599999999999999999999986                      


Q ss_pred             --ceeeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc
Q 010975          275 --TTFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL  348 (496)
Q Consensus       275 --~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~  348 (496)
                        -.++.++.++.....  .....++.+.+....    .+..|++|||+|.|..+             ..+.++..++  
T Consensus        72 ~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~-------------A~nallk~lE--  134 (325)
T COG0470          72 NHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED-------------AANALLKTLE--  134 (325)
T ss_pred             CCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH-------------HHHHHHHHhc--
Confidence              467777777654421  123445555444332    23469999999999653             2355667666  


Q ss_pred             cccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHH
Q 010975          349 TQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFE  394 (496)
Q Consensus       349 ~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~  394 (496)
                       ..+....+|.+||.++.+-+.+++|+.. +.|++|+........+
T Consensus       135 -ep~~~~~~il~~n~~~~il~tI~SRc~~-i~f~~~~~~~~i~~~e  178 (325)
T COG0470         135 -EPPKNTRFILITNDPSKILPTIRSRCQR-IRFKPPSRLEAIAWLE  178 (325)
T ss_pred             -cCCCCeEEEEEcCChhhccchhhhccee-eecCCchHHHHHHHhh
Confidence             3445566788899999999999999966 8888776665555444

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=99.16  E-value=4.3e-11  Score=123.12  Aligned_cols=154  Identities=27%  Similarity=0.353  Sum_probs=100.6

Q ss_pred             hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc--cccCChH
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS--KWRGDSE  294 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~--~~~G~~e  294 (496)
                      .++|.++++..+...+..              ..++||.||||||||++|+++|..++.+|+.+.+.....  +..|...
T Consensus        25 ~~~g~~~~~~~~l~a~~~--------------~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~   90 (329)
T COG0714          25 VVVGDEEVIELALLALLA--------------GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA   90 (329)
T ss_pred             eeeccHHHHHHHHHHHHc--------------CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence            478888888877665533              368999999999999999999999999999999864332  2222211


Q ss_pred             HHHH----HHHHHhhh--cCC--cceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc-------c--ccCcEEEE
Q 010975          295 KLIK----VLFELARH--HAP--STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-------T--QSDELVFV  357 (496)
Q Consensus       295 ~~l~----~lf~~a~~--~~p--~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~-------~--~~~~~viV  357 (496)
                      -...    ..+.....  ...  +|+++|||+...+             .+++.|+..|++.       .  .-....+|
T Consensus        91 ~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p-------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~v  157 (329)
T COG0714          91 YAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPP-------------EVQNALLEALEERQVTVPGLTTIRLPPPFIV  157 (329)
T ss_pred             HhhhhccCCeEEEecCCcccccceEEEEeccccCCH-------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEE
Confidence            1111    10110000  011  3999999987532             3445566666531       1  11245778


Q ss_pred             EeccCC-----cccccHHHHHHhhhhhcccCC-CHHHHHHHHHhhC
Q 010975          358 LAATNL-----PWELDAAMLRRLEKRILVPLP-DTEARRAMFESLL  397 (496)
Q Consensus       358 IatTn~-----p~~Ld~aL~rRf~~~I~~~~P-~~eeR~~Il~~~l  397 (496)
                      ++|+|.     ...+++++++||...+.+++| +.++...+.....
T Consensus       158 iaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~  203 (329)
T COG0714         158 IATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVG  203 (329)
T ss_pred             EEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCc
Confidence            888883     356899999999888999999 5555555555544

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=4.3e-11  Score=119.05  Aligned_cols=131  Identities=27%  Similarity=0.408  Sum_probs=91.2

Q ss_pred             hhcchHHHHHHhhhhcccccCcccccc---ccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc-cccCCh
Q 010975          218 IKGLENAKRLLKEAVVMPIKYPKYFTG---LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGDS  293 (496)
Q Consensus       218 liG~e~vk~~L~e~l~~~~~~~~~~~~---~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~-~~~G~~  293 (496)
                      ++|++.+|+.|.-.+..+-++-.....   .--...++||.||+|+|||.||+.+|+.++.||..-++..|.. .|+|+-
T Consensus        63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGED  142 (408)
T COG1219          63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGED  142 (408)
T ss_pred             eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchh
Confidence            899999999887655332211111001   1122357999999999999999999999999999999998876 688875


Q ss_pred             -HHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCcchhHHh-hhhhhhhhhhccCc
Q 010975          294 -EKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEAS-RRLKTELLIQMDGL  348 (496)
Q Consensus       294 -e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~~~~~~~-~~i~~~Ll~~ld~~  348 (496)
                       +..+.+++..+.    ....+|++|||||+++.+..+..-..+++ .-++.+||..++|.
T Consensus       143 VENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT  203 (408)
T COG1219         143 VENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT  203 (408)
T ss_pred             HHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence             444555655443    22348999999999988754333222222 34677899999864

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.16  E-value=5.6e-11  Score=135.93  Aligned_cols=165  Identities=23%  Similarity=0.226  Sum_probs=110.2

Q ss_pred             chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc----
Q 010975          216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----  288 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~----  288 (496)
                      +.|+|++.+++.+.+.+......-   .....|...+||+||||||||.+|+++|..+   ...++.++++++...    
T Consensus       566 ~~v~GQ~~Av~~v~~~i~~~~~gl---~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~  642 (852)
T TIGR03345       566 ERVIGQDHALEAIAERIRTARAGL---EDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVS  642 (852)
T ss_pred             CeEcChHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhc
Confidence            368999999999999885532100   0001222348999999999999999999998   457889998776432    


Q ss_pred             --------ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc--------ccC
Q 010975          289 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSD  352 (496)
Q Consensus       289 --------~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~  352 (496)
                              |+|..+.  ..+.+..+..+++||+|||||++.+             .+.+.|+..+|.-.        ..-
T Consensus       643 ~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~~-------------~v~~~Llq~ld~g~l~d~~Gr~vd~  707 (852)
T TIGR03345       643 RLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAHP-------------DVLELFYQVFDKGVMEDGEGREIDF  707 (852)
T ss_pred             cccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcCH-------------HHHHHHHHHhhcceeecCCCcEEec
Confidence                    3333221  1233444556779999999987632             23445666665221        112


Q ss_pred             cEEEEEeccCCcc-----------------------------cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCC
Q 010975          353 ELVFVLAATNLPW-----------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS  399 (496)
Q Consensus       353 ~~viVIatTn~p~-----------------------------~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~  399 (496)
                      .+.+||+|||...                             .+.|++++|++ ++.|.+.+.++...|+...+..
T Consensus       708 ~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~  782 (852)
T TIGR03345       708 KNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDR  782 (852)
T ss_pred             cccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHH
Confidence            4577888988521                             04466777886 6889999999999998887644

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.15  E-value=4e-11  Score=129.87  Aligned_cols=206  Identities=19%  Similarity=0.163  Sum_probs=127.4

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhccccc-----------------Cccccccc-----cCccceeeeeCCCCChh
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK-----------------YPKYFTGL-----LSPWKGILLFGPPGTGK  262 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~-----------------~~~~~~~~-----~~~~~~vLL~GPpGtGK  262 (496)
                      .|+.++.+.+|.|+.|.+.+-+.+..++...--                 ..+.+...     .++.+-+||+||||-||
T Consensus       260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK  339 (877)
T KOG1969|consen  260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK  339 (877)
T ss_pred             eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence            567778888899999999999988887733210                 00111111     12334589999999999


Q ss_pred             HHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHh----hhcCCcceehhhHHHHHhhhcCCcchhHHhhhhh
Q 010975          263 TMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLK  338 (496)
Q Consensus       263 T~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a----~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~  338 (496)
                      ||||+.+|++.|+.+++||+++-.+.-  ....++..+...-    ...+|..|+|||||--.             +..+
T Consensus       340 TTLAHViAkqaGYsVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-------------~~~V  404 (877)
T KOG1969|consen  340 TTLAHVIAKQAGYSVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-------------RAAV  404 (877)
T ss_pred             hHHHHHHHHhcCceEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEecccCCc-------------HHHH
Confidence            999999999999999999999864321  1222222222211    12568899999997432             1122


Q ss_pred             hhhhhhcc-------Cccc---------cC--cEEEEEeccCCcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCC
Q 010975          339 TELLIQMD-------GLTQ---------SD--ELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLP  398 (496)
Q Consensus       339 ~~Ll~~ld-------~~~~---------~~--~~viVIatTn~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~  398 (496)
                      +.++..+.       |-..         +.  -..-|||.||+.+  -|+|+.  -|..++.|..|...-..+=|+.++.
T Consensus       405 dvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~  482 (877)
T KOG1969|consen  405 DVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNEICH  482 (877)
T ss_pred             HHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHHHHHh
Confidence            22333222       1000         00  0134788899987  455554  6888899999988877777777776


Q ss_pred             CCCCCCC-CCcceeeecccCCcCCchhhcchhhh
Q 010975          399 SQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAA  431 (496)
Q Consensus       399 ~~~~~~~-~~l~~la~~t~g~s~~dI~~l~~~A~  431 (496)
                      ...+..+ ..+..|++.++    .||+..++...
T Consensus       483 rE~mr~d~~aL~~L~el~~----~DIRsCINtLQ  512 (877)
T KOG1969|consen  483 RENMRADSKALNALCELTQ----NDIRSCINTLQ  512 (877)
T ss_pred             hhcCCCCHHHHHHHHHHhc----chHHHHHHHHH
Confidence            6555422 12333444333    57777666443

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=99.15  E-value=8.5e-11  Score=122.44  Aligned_cols=160  Identities=16%  Similarity=0.123  Sum_probs=109.2

Q ss_pred             CCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceee-----------
Q 010975          210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF-----------  278 (496)
Q Consensus       210 ~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i-----------  278 (496)
                      ..+..+++|+|++.+++.|.+.+....           .+..+||+||+|+||+++|.++|+.+-+.--           
T Consensus        13 ~~P~~~~~iiGq~~~~~~L~~~~~~~r-----------l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~   81 (365)
T PRK07471         13 PHPRETTALFGHAAAEAALLDAYRSGR-----------LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT   81 (365)
T ss_pred             CCCCchhhccChHHHHHHHHHHHHcCC-----------CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence            356678999999999999999886532           3457999999999999999999998832100           


Q ss_pred             ----eeec-----------cccc--c-c--ccC------ChHHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCc
Q 010975          279 ----NISA-----------SSVV--S-K--WRG------DSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEAR  328 (496)
Q Consensus       279 ----~v~~-----------s~l~--~-~--~~G------~~e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~  328 (496)
                          .-.|           .++.  . .  ..+      -.-..++.+.+.+.    ...+.|++|||+|.+..      
T Consensus        82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------  155 (365)
T PRK07471         82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------  155 (365)
T ss_pred             cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH------
Confidence                0000           0000  0 0  000      01233444444333    24567999999998732      


Q ss_pred             chhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhC
Q 010975          329 SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL  397 (496)
Q Consensus       329 ~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l  397 (496)
                             ...+.|++.++.   ....+++|.+|+.++.+.+.+++|+.. +.++.|+.++..+++....
T Consensus       156 -------~aanaLLK~LEe---pp~~~~~IL~t~~~~~llpti~SRc~~-i~l~~l~~~~i~~~L~~~~  213 (365)
T PRK07471        156 -------NAANALLKVLEE---PPARSLFLLVSHAPARLLPTIRSRCRK-LRLRPLAPEDVIDALAAAG  213 (365)
T ss_pred             -------HHHHHHHHHHhc---CCCCeEEEEEECCchhchHHhhccceE-EECCCCCHHHHHHHHHHhc
Confidence                   234668888873   333455667888888899999999965 9999999999999888754

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=99.15  E-value=1.5e-10  Score=122.08  Aligned_cols=142  Identities=20%  Similarity=0.275  Sum_probs=87.6

Q ss_pred             cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce-------eeeeec----c
Q 010975          215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-------FFNISA----S  283 (496)
Q Consensus       215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~-------~i~v~~----s  283 (496)
                      ++++.+.+...+.+...+..              .++++|+||||||||++|+.+|..++..       .+.++.    .
T Consensus       174 l~d~~i~e~~le~l~~~L~~--------------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe  239 (459)
T PRK11331        174 LNDLFIPETTIETILKRLTI--------------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE  239 (459)
T ss_pred             hhcccCCHHHHHHHHHHHhc--------------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence            45677777777777666532              3689999999999999999999988431       222221    1


Q ss_pred             cccccc----cCC--hHHHHHHHHHHhhh--cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc---------
Q 010975          284 SVVSKW----RGD--SEKLIKVLFELARH--HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD---------  346 (496)
Q Consensus       284 ~l~~~~----~G~--~e~~l~~lf~~a~~--~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld---------  346 (496)
                      ++...+    .|-  ..+.+.++...|..  ..|.+|+||||+....++            +..+++..++         
T Consensus       240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k------------iFGel~~lLE~~~rg~~~~  307 (459)
T PRK11331        240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK------------VFGEVMMLMEHDKRGENWS  307 (459)
T ss_pred             HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH------------hhhhhhhhccccccccccc
Confidence            222111    110  11233445555554  357899999998754332            1111111111         


Q ss_pred             ----------CccccCcEEEEEeccCCcc----cccHHHHHHhhhhhcccC
Q 010975          347 ----------GLTQSDELVFVLAATNLPW----ELDAAMLRRLEKRILVPL  383 (496)
Q Consensus       347 ----------~~~~~~~~viVIatTn~p~----~Ld~aL~rRf~~~I~~~~  383 (496)
                                ..-.-+.++.||||+|..+    .+|.|++|||.. +.+.+
T Consensus       308 v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~f-i~i~p  357 (459)
T PRK11331        308 VPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSF-IDIEP  357 (459)
T ss_pred             eeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhhe-EEecC
Confidence                      0112356799999999987    699999999966 66654

>PRK09087 hypothetical protein; Validated

Probab=99.14  E-value=7.1e-11  Score=115.27  Aligned_cols=122  Identities=19%  Similarity=0.257  Sum_probs=80.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS  329 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~  329 (496)
                      +.++|+||+|+|||||++++++..+..++  +...+...           ++.....   .+|+|||++.+...      
T Consensus        45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~~~-----------~~~~~~~---~~l~iDDi~~~~~~------  102 (226)
T PRK09087         45 PVVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIGSD-----------AANAAAE---GPVLIEDIDAGGFD------  102 (226)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcchH-----------HHHhhhc---CeEEEECCCCCCCC------
Confidence            35999999999999999999988765533  33222211           1111111   58999999865211      


Q ss_pred             hhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc--c-ccHHHHHHhh--hhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975          330 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--E-LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTG  402 (496)
Q Consensus       330 ~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~--~-Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~~~~~  402 (496)
                              ..+|+..++.....+. .+|++++..|.  . ..+.+++|+.  ..+.+..|+.++|.++++..+.....
T Consensus       103 --------~~~lf~l~n~~~~~g~-~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~  171 (226)
T PRK09087        103 --------ETGLFHLINSVRQAGT-SLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQL  171 (226)
T ss_pred             --------HHHHHHHHHHHHhCCC-eEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCC
Confidence                    1235555544433343 44555555553  2 3688999994  66889999999999999999876543

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.14  E-value=2.2e-11  Score=109.20  Aligned_cols=111  Identities=27%  Similarity=0.337  Sum_probs=66.4

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc------cccCC--hHHHHHHHHHHhhhcCCcceehhhHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS------KWRGD--SEKLIKVLFELARHHAPSTIFLDEIDAIIS  322 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~------~~~G~--~e~~l~~lf~~a~~~~p~ILfIDEID~L~~  322 (496)
                      +|||+||||||||++|+.+|+.++.+++.++++....      .+.-.  ........+..+. ..+++++|||++...+
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a~~   79 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRAPP   79 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG--H
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccCCH
Confidence            5899999999999999999999999999888765332      22110  0000000000011 1357999999987643


Q ss_pred             hhcCCcchhHHhhhhhhhhhhhccCc----------cccCc------EEEEEeccCCcc----cccHHHHHHh
Q 010975          323 QRGEARSEHEASRRLKTELLIQMDGL----------TQSDE------LVFVLAATNLPW----ELDAAMLRRL  375 (496)
Q Consensus       323 ~r~~~~~~~~~~~~i~~~Ll~~ld~~----------~~~~~------~viVIatTn~p~----~Ld~aL~rRf  375 (496)
                      .             +...|+..++.-          .....      .+.+|+|+|...    .+++++++||
T Consensus        80 ~-------------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf  139 (139)
T PF07728_consen   80 E-------------VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF  139 (139)
T ss_dssp             H-------------HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred             H-------------HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence            2             222233333211          00111      378999999998    7999999998

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.13  E-value=7.4e-11  Score=135.03  Aligned_cols=166  Identities=23%  Similarity=0.273  Sum_probs=112.5

Q ss_pred             chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc----
Q 010975          216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----  288 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~----  288 (496)
                      +.|+|++++++.|.+.+......-   .....|...+||+||||||||++|+++|+.+   +.+++.++++++...    
T Consensus       509 ~~v~GQ~~ai~~l~~~i~~~~~gl---~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~  585 (821)
T CHL00095        509 KRIIGQDEAVVAVSKAIRRARVGL---KNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS  585 (821)
T ss_pred             CcCcChHHHHHHHHHHHHHHhhcc---cCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence            358999999999998885432100   0011233458999999999999999999987   467888888776421    


Q ss_pred             --------ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------cccC
Q 010975          289 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSD  352 (496)
Q Consensus       289 --------~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~~  352 (496)
                              |+|..+  ...+.+.++..+.+||+|||+|++.+             .+.+.|+..++.-        ....
T Consensus       586 ~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka~~-------------~v~~~Llq~le~g~~~d~~g~~v~~  650 (821)
T CHL00095        586 KLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKAHP-------------DIFNLLLQILDDGRLTDSKGRTIDF  650 (821)
T ss_pred             HhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhCCH-------------HHHHHHHHHhccCceecCCCcEEec
Confidence                    222211  12344555555568999999998743             2445666666632        1123


Q ss_pred             cEEEEEeccCCccc-------------------------------------ccHHHHHHhhhhhcccCCCHHHHHHHHHh
Q 010975          353 ELVFVLAATNLPWE-------------------------------------LDAAMLRRLEKRILVPLPDTEARRAMFES  395 (496)
Q Consensus       353 ~~viVIatTn~p~~-------------------------------------Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~  395 (496)
                      .+.+||+|||....                                     +.|.++.|++.++.|.+.+.++..+|++.
T Consensus       651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~  730 (821)
T CHL00095        651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEI  730 (821)
T ss_pred             CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHH
Confidence            45778889874311                                     23466778988899999999999999887


Q ss_pred             hCCC
Q 010975          396 LLPS  399 (496)
Q Consensus       396 ~l~~  399 (496)
                      .+..
T Consensus       731 ~l~~  734 (821)
T CHL00095        731 MLKN  734 (821)
T ss_pred             HHHH
Confidence            7753

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator

Probab=99.13  E-value=4.9e-11  Score=127.30  Aligned_cols=200  Identities=21%  Similarity=0.258  Sum_probs=127.9

Q ss_pred             ccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccc-
Q 010975          214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW-  289 (496)
Q Consensus       214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~-  289 (496)
                      .+.+++|.....+.+.+.+....          ....+++|+|++||||+++|++++...   +.+|+.++|..+.... 
T Consensus       137 ~~~~lig~s~~~~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~  206 (445)
T TIGR02915       137 ALRGLITSSPGMQKICRTIEKIA----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL  206 (445)
T ss_pred             cccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence            45678888887777777654321          223579999999999999999999876   4689999998763221 


Q ss_pred             ----cC----ChHHH---HHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC--------ccc
Q 010975          290 ----RG----DSEKL---IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG--------LTQ  350 (496)
Q Consensus       290 ----~G----~~e~~---l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~--------~~~  350 (496)
                          .|    ...+.   ....+..+   ..++||||||+.|...             ++..|+..++.        ...
T Consensus       207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~~-------------~q~~l~~~l~~~~~~~~~~~~~  270 (445)
T TIGR02915       207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDLPLN-------------LQAKLLRFLQERVIERLGGREE  270 (445)
T ss_pred             HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhCCHH-------------HHHHHHHHHhhCeEEeCCCCce
Confidence                11    00000   00112222   3479999999998544             22334444432        112


Q ss_pred             cCcEEEEEeccCCc-------ccccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccCCc
Q 010975          351 SDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYS  419 (496)
Q Consensus       351 ~~~~viVIatTn~p-------~~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g~s  419 (496)
                      ....+.+|++|+..       ..+.+.|..|+.. +.+..|...+|.+    ++++++......       ..+...+++
T Consensus       271 ~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~-~~i~lPpLr~R~~Di~~l~~~~l~~~~~~-------~~~~~~~~~  342 (445)
T TIGR02915       271 IPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAE-ISITIPPLRSRDGDAVLLANAFLERFARE-------LKRKTKGFT  342 (445)
T ss_pred             eeeceEEEEecCCCHHHHHHcCCccHHHHHHhcc-ceecCCCchhchhhHHHHHHHHHHHHHHH-------hCCCCCCCC
Confidence            22346778787765       2355667778855 7888888888876    445554432211       111234578


Q ss_pred             CCchhhcchhhhccHHHHHHHHhhcccc
Q 010975          420 GSDIRLVSKEAAMQPLRRLMVLLEGRQE  447 (496)
Q Consensus       420 ~~dI~~l~~~A~~~a~rR~~~~le~~~~  447 (496)
                      +..++.|.++.|.++++++.+.++....
T Consensus       343 ~~a~~~L~~~~wpgNvreL~~~i~~a~~  370 (445)
T TIGR02915       343 DDALRALEAHAWPGNVRELENKVKRAVI  370 (445)
T ss_pred             HHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence            8889999999999999999888876554

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).

>PRK13531 regulatory ATPase RavA; Provisional

Probab=99.11  E-value=1.3e-10  Score=123.38  Aligned_cols=154  Identities=19%  Similarity=0.225  Sum_probs=92.7

Q ss_pred             chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc--eeeeeecc-cccccccCC
Q 010975          216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISAS-SVVSKWRGD  292 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~--~~i~v~~s-~l~~~~~G~  292 (496)
                      ..++|.+++++.+...+..              ..++||.||||||||++|++++..++.  +|..+.+. ....+..|.
T Consensus        20 ~~i~gre~vI~lll~aala--------------g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~   85 (498)
T PRK13531         20 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP   85 (498)
T ss_pred             hhccCcHHHHHHHHHHHcc--------------CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence            4699999999998876632              368999999999999999999998743  34433322 111222222


Q ss_pred             h-HHHH--HHHHHHhh-hc--CCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc-------ccCcEEEEEe
Q 010975          293 S-EKLI--KVLFELAR-HH--APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------QSDELVFVLA  359 (496)
Q Consensus       293 ~-e~~l--~~lf~~a~-~~--~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-------~~~~~viVIa  359 (496)
                      . -...  ..-|.... +.  ...+||+|||+.+.             ..+++.|+..|+.-.       ..-...++++
T Consensus        86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras-------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~  152 (498)
T PRK13531         86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG-------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVT  152 (498)
T ss_pred             HHHhhhhhcCchhhhcCCccccccEEeecccccCC-------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEE
Confidence            1 0000  11121111 10  22489999997653             334566666663221       1222234455


Q ss_pred             ccCCccc---ccHHHHHHhhhhhcccCCC-HHHHHHHHHhh
Q 010975          360 ATNLPWE---LDAAMLRRLEKRILVPLPD-TEARRAMFESL  396 (496)
Q Consensus       360 tTn~p~~---Ld~aL~rRf~~~I~~~~P~-~eeR~~Il~~~  396 (496)
                      +||...+   ..+++.+||...+.+++|+ .++-.+++...
T Consensus       153 ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~  193 (498)
T PRK13531        153 ASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ  193 (498)
T ss_pred             ECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence            5574422   3359999998889999997 45557777654

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=99.10  E-value=3.2e-10  Score=107.14  Aligned_cols=126  Identities=17%  Similarity=0.220  Sum_probs=87.1

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcce------------------------eeeeecccccccccCChHHHHHHHHHHh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSVVSKWRGDSEKLIKVLFELA  304 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~------------------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a  304 (496)
                      +..+||+||+|+|||++|+.+++.+...                        +..+....   .  ......++.+.+.+
T Consensus        14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~~   88 (188)
T TIGR00678        14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEFL   88 (188)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHHH
Confidence            3579999999999999999999987432                        11111100   0  01224555555555


Q ss_pred             hh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhc
Q 010975          305 RH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRIL  380 (496)
Q Consensus       305 ~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~  380 (496)
                      ..    ....|++|||+|.+...             ..+.|+..++..   +....+|.+|+.+..+.+++++|+. .+.
T Consensus        89 ~~~~~~~~~kviiide~~~l~~~-------------~~~~Ll~~le~~---~~~~~~il~~~~~~~l~~~i~sr~~-~~~  151 (188)
T TIGR00678        89 SRTPQESGRRVVIIEDAERMNEA-------------AANALLKTLEEP---PPNTLFILITPSPEKLLPTIRSRCQ-VLP  151 (188)
T ss_pred             ccCcccCCeEEEEEechhhhCHH-------------HHHHHHHHhcCC---CCCeEEEEEECChHhChHHHHhhcE-Eee
Confidence            43    23469999999998432             235577777642   2334566667777899999999995 599


Q ss_pred             ccCCCHHHHHHHHHhh
Q 010975          381 VPLPDTEARRAMFESL  396 (496)
Q Consensus       381 ~~~P~~eeR~~Il~~~  396 (496)
                      +++|+.++...+++..
T Consensus       152 ~~~~~~~~~~~~l~~~  167 (188)
T TIGR00678       152 FPPLSEEALLQWLIRQ  167 (188)
T ss_pred             CCCCCHHHHHHHHHHc
Confidence            9999999998888775

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.09  E-value=1.6e-10  Score=132.84  Aligned_cols=167  Identities=22%  Similarity=0.262  Sum_probs=111.5

Q ss_pred             chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc----
Q 010975          216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----  288 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~----  288 (496)
                      ..|+|++.+++.+.+.+......   ......|...+||+||||||||++|+++|..+   +.+++.++++++...    
T Consensus       565 ~~v~GQ~~av~~v~~~i~~~~~g---l~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~  641 (852)
T TIGR03346       565 ERVVGQDEAVEAVSDAIRRSRAG---LSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA  641 (852)
T ss_pred             cccCCChHHHHHHHHHHHHHhcc---CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence            46999999999999988643210   00001233569999999999999999999987   568999998776432    


Q ss_pred             -ccCChHH-----HHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc--------ccCcE
Q 010975          289 -WRGDSEK-----LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDEL  354 (496)
Q Consensus       289 -~~G~~e~-----~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~  354 (496)
                       ..|...+     ....+....+....+||+||||+++.+             .+.+.|++.++.-.        ..-.+
T Consensus       642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~-------------~v~~~Ll~~l~~g~l~d~~g~~vd~rn  708 (852)
T TIGR03346       642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP-------------DVFNVLLQVLDDGRLTDGQGRTVDFRN  708 (852)
T ss_pred             HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH-------------HHHHHHHHHHhcCceecCCCeEEecCC
Confidence             1111111     012233344445557999999998743             24455666664221        11245


Q ss_pred             EEEEeccCCccc-------------------------ccHHHHHHhhhhhcccCCCHHHHHHHHHhhCC
Q 010975          355 VFVLAATNLPWE-------------------------LDAAMLRRLEKRILVPLPDTEARRAMFESLLP  398 (496)
Q Consensus       355 viVIatTn~p~~-------------------------Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~  398 (496)
                      .+||+|||....                         +.|.|+.|++.++.|.+++.++...|+...+.
T Consensus       709 ~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~  777 (852)
T TIGR03346       709 TVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLG  777 (852)
T ss_pred             cEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHH
Confidence            678899987311                         33567779999999999999999999887764

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=99.09  E-value=1.2e-10  Score=108.52  Aligned_cols=121  Identities=25%  Similarity=0.335  Sum_probs=75.1

Q ss_pred             hhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc-----c
Q 010975          218 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK-----W  289 (496)
Q Consensus       218 liG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~-----~  289 (496)
                      ++|.+...+++.+.+.....          .+.+|||+|++||||+.+|++|++..   +.||+.++|+.+..+     .
T Consensus         1 liG~s~~m~~~~~~~~~~a~----------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L   70 (168)
T PF00158_consen    1 LIGESPAMKRLREQAKRAAS----------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL   70 (168)
T ss_dssp             SS--SHHHHHHHHHHHHHTT----------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred             CEeCCHHHHHHHHHHHHHhC----------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence            46777777777776644332          23689999999999999999999977   579999999876432     1


Q ss_pred             cCCh-------HHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc--------CccccCcE
Q 010975          290 RGDS-------EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD--------GLTQSDEL  354 (496)
Q Consensus       290 ~G~~-------e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld--------~~~~~~~~  354 (496)
                      .|..       ......+++.|..   ++||||||+.|....             +..|+..++        +......+
T Consensus        71 FG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~~~~-------------Q~~Ll~~l~~~~~~~~g~~~~~~~~  134 (168)
T PF00158_consen   71 FGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLPPEL-------------QAKLLRVLEEGKFTRLGSDKPVPVD  134 (168)
T ss_dssp             HEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-HHH-------------HHHHHHHHHHSEEECCTSSSEEE--
T ss_pred             hccccccccccccccCCceeeccc---eEEeecchhhhHHHH-------------HHHHHHHHhhchhcccccccccccc
Confidence            1111       0111246666666   899999999986542             233444443        22223346


Q ss_pred             EEEEeccCCc
Q 010975          355 VFVLAATNLP  364 (496)
Q Consensus       355 viVIatTn~p  364 (496)
                      +.||++|+.+
T Consensus       135 ~RiI~st~~~  144 (168)
T PF00158_consen  135 VRIIASTSKD  144 (168)
T ss_dssp             EEEEEEESS-
T ss_pred             ceEEeecCcC
Confidence            8888888865

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=99.08  E-value=1.1e-10  Score=101.66  Aligned_cols=127  Identities=31%  Similarity=0.427  Sum_probs=79.2

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcce---eeeeeccccccc--------------ccCChHHHHHHHHHHhhhcCCcce
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSVVSK--------------WRGDSEKLIKVLFELARHHAPSTI  312 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~---~i~v~~s~l~~~--------------~~G~~e~~l~~lf~~a~~~~p~IL  312 (496)
                      .+++|+||||||||++++.+|..+...   ++.++++.....              .........+.+++.++...+.+|
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi   82 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL   82 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            679999999999999999999999765   788877654321              123345566778888888778999


Q ss_pred             ehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCC-cccccHHHHHHhhhhhcccCC
Q 010975          313 FLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-PWELDAAMLRRLEKRILVPLP  384 (496)
Q Consensus       313 fIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~-p~~Ld~aL~rRf~~~I~~~~P  384 (496)
                      +|||++.+..........    ..........    ........+|+++|. ....+..+.+|++..+.+..+
T Consensus        83 iiDei~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (148)
T smart00382       83 ILDEITSLLDAEQEALLL----LLEELRLLLL----LKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI  147 (148)
T ss_pred             EEECCcccCCHHHHHHHH----hhhhhHHHHH----HHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence            999999885442111000    0000000000    112233557778875 334555666677766665443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=99.08  E-value=3.5e-10  Score=116.43  Aligned_cols=149  Identities=14%  Similarity=0.147  Sum_probs=103.8

Q ss_pred             ccchhhc-chHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce----------------
Q 010975          214 KWESIKG-LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------------  276 (496)
Q Consensus       214 ~l~dliG-~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~----------------  276 (496)
                      .|++|+| ++.+++.|...+...           ..++.+||+||+|+||+++|+++|+.+..+                
T Consensus         3 ~~~~i~~~q~~~~~~L~~~~~~~-----------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~   71 (329)
T PRK08058          3 TWEQLTALQPVVVKMLQNSIAKN-----------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR   71 (329)
T ss_pred             cHHHHHhhHHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence            3788988 899999999887432           234568999999999999999999987322                


Q ss_pred             --------eeeeecccccccccCChHHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhh
Q 010975          277 --------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ  344 (496)
Q Consensus       277 --------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~  344 (496)
                              +..+...   +..  -.-..++.+.+.+.    .....|++|||+|.+..             ...+.|++.
T Consensus        72 ~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~-------------~a~NaLLK~  133 (329)
T PRK08058         72 IDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA-------------SAANSLLKF  133 (329)
T ss_pred             HhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH-------------HHHHHHHHH
Confidence                    1111110   000  11234555554433    12345999999998842             234678888


Q ss_pred             ccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHh
Q 010975          345 MDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFES  395 (496)
Q Consensus       345 ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~  395 (496)
                      ++.   .+..+++|.+|+.+..+.+++++|+.. +.++.|+.++....++.
T Consensus       134 LEE---Pp~~~~~Il~t~~~~~ll~TIrSRc~~-i~~~~~~~~~~~~~L~~  180 (329)
T PRK08058        134 LEE---PSGGTTAILLTENKHQILPTILSRCQV-VEFRPLPPESLIQRLQE  180 (329)
T ss_pred             hcC---CCCCceEEEEeCChHhCcHHHHhhcee-eeCCCCCHHHHHHHHHH
Confidence            873   344566667888888999999999965 99999999888777764

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=99.07  E-value=2.8e-10  Score=114.77  Aligned_cols=132  Identities=22%  Similarity=0.168  Sum_probs=78.0

Q ss_pred             CcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCC------------cccccHHHHHHhh
Q 010975          309 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL------------PWELDAAMLRRLE  376 (496)
Q Consensus       309 p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~------------p~~Ld~aL~rRf~  376 (496)
                      |+||||||+|.|--             ..++.|-..|+   ..-.++ ||.+||+            |+.++..|++|+ 
T Consensus       292 pGVLFIDEvHmLDI-------------E~FsFlnrAlE---se~aPI-ii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl-  353 (450)
T COG1224         292 PGVLFIDEVHMLDI-------------ECFSFLNRALE---SELAPI-IILATNRGMTKIRGTDIESPHGIPLDLLDRL-  353 (450)
T ss_pred             cceEEEechhhhhH-------------HHHHHHHHHhh---cccCcE-EEEEcCCceeeecccCCcCCCCCCHhhhhhe-
Confidence            78999999988721             12233333333   233334 4455653            456999999999 


Q ss_pred             hhhcccCCCHHHHHHHHHhhCCCCCCCCC-CCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCC
Q 010975          377 KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP  455 (496)
Q Consensus       377 ~~I~~~~P~~eeR~~Il~~~l~~~~~~~~-~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~  455 (496)
                      .+|...+++.++.++|++..+.......+ ..++.++.....-|-+.--+|+.-|...|.+|      +           
T Consensus       354 lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r------g-----------  416 (450)
T COG1224         354 LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR------G-----------  416 (450)
T ss_pred             eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh------C-----------
Confidence            55889999999999999998877665532 22444444333322222222222222222222      1           


Q ss_pred             CCCCCCchhHHHHhhcCCCCc
Q 010975          456 QIGPIRPEDVEIALKNTRPSA  476 (496)
Q Consensus       456 ~~~~It~eDf~~Al~~~~Ps~  476 (496)
                       ...|..+|+++|-.-+--+.
T Consensus       417 -~~~V~~~dVe~a~~lF~D~k  436 (450)
T COG1224         417 -SKRVEVEDVERAKELFLDVK  436 (450)
T ss_pred             -CCeeehhHHHHHHHHHhhHH
Confidence             12478999999987765443

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=99.07  E-value=2.1e-10  Score=123.32  Aligned_cols=216  Identities=22%  Similarity=0.224  Sum_probs=136.2

Q ss_pred             ccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccc-
Q 010975          214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW-  289 (496)
Q Consensus       214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~-  289 (496)
                      .+.+++|.....+.+.+.+....          .....++|.|++|||||++|++++...   +.+|+.++|..+.... 
T Consensus       136 ~~~~lig~s~~~~~l~~~~~~~~----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~  205 (469)
T PRK10923        136 PTTDIIGEAPAMQDVFRIIGRLS----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI  205 (469)
T ss_pred             ccccceecCHHHHHHHHHHHHHh----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence            45678998887777776654321          223579999999999999999999987   5789999998763221 


Q ss_pred             ----cCChHH-------HHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC--------ccc
Q 010975          290 ----RGDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG--------LTQ  350 (496)
Q Consensus       290 ----~G~~e~-------~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~--------~~~  350 (496)
                          .|...+       .....++.+   ..+.|||||+|.|....             +..|+..++.        ...
T Consensus       206 ~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~~~~-------------q~~L~~~l~~~~~~~~~~~~~  269 (469)
T PRK10923        206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMPLDV-------------QTRLLRVLADGQFYRVGGYAP  269 (469)
T ss_pred             HHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCCHHH-------------HHHHHHHHhcCcEEeCCCCCe
Confidence                111000       000112222   24799999999885442             2334444432        112


Q ss_pred             cCcEEEEEeccCCcc-------cccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccCCc
Q 010975          351 SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYS  419 (496)
Q Consensus       351 ~~~~viVIatTn~p~-------~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g~s  419 (496)
                      ....+.+|+||+..-       .+.+.|..|+.. +.+..|...+|.+    ++++++......       ......+++
T Consensus       270 ~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~-~~i~~PpLreR~~Di~~l~~~~l~~~~~~-------~~~~~~~~~  341 (469)
T PRK10923        270 VKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV-IRVHLPPLRERREDIPRLARHFLQVAARE-------LGVEAKLLH  341 (469)
T ss_pred             EEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcc-eeecCCCcccchhhHHHHHHHHHHHHHHH-------cCCCCCCcC
Confidence            223467888887652       356778888854 6777777766665    555665432211       112234678


Q ss_pred             CCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHh
Q 010975          420 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL  469 (496)
Q Consensus       420 ~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al  469 (496)
                      +..+..|.++.|.++++++.+.++.........      .|+.+|+...+
T Consensus       342 ~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~~~~------~i~~~~l~~~~  385 (469)
T PRK10923        342 PETEAALTRLAWPGNVRQLENTCRWLTVMAAGQ------EVLIQDLPGEL  385 (469)
T ss_pred             HHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCC------cccHHHCcHhh
Confidence            888999999999999999998887665443332      25666664333

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.06  E-value=2.8e-10  Score=130.50  Aligned_cols=163  Identities=23%  Similarity=0.301  Sum_probs=109.4

Q ss_pred             chhhcchHHHHHHhhhhcccc---cCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc-
Q 010975          216 ESIKGLENAKRLLKEAVVMPI---KYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK-  288 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~---~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~-  288 (496)
                      +.++|++.+++.+.+.+....   ..+      ..|...+||+||||||||++|+++|+.+   +.+++.++++++... 
T Consensus       568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~------~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~  641 (857)
T PRK10865        568 HRVIGQNEAVEAVSNAIRRSRAGLSDP------NRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKH  641 (857)
T ss_pred             CeEeCCHHHHHHHHHHHHHHHhcccCC------CCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhh
Confidence            358999999999988885432   111      1122468999999999999999999987   457888988776432 


Q ss_pred             -----------ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------c
Q 010975          289 -----------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------T  349 (496)
Q Consensus       289 -----------~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~  349 (496)
                                 |+|..+.  ..+....+....+||+|||++.+.+.             +.+.|+..++.-        .
T Consensus       642 ~~~~LiG~~pgy~g~~~~--g~l~~~v~~~p~~vLllDEieka~~~-------------v~~~Ll~ile~g~l~d~~gr~  706 (857)
T PRK10865        642 SVSRLVGAPPGYVGYEEG--GYLTEAVRRRPYSVILLDEVEKAHPD-------------VFNILLQVLDDGRLTDGQGRT  706 (857)
T ss_pred             hHHHHhCCCCcccccchh--HHHHHHHHhCCCCeEEEeehhhCCHH-------------HHHHHHHHHhhCceecCCceE
Confidence                       1121111  11223333444589999999876422             345566665421        1


Q ss_pred             ccCcEEEEEeccCCcc-------------------------cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCC
Q 010975          350 QSDELVFVLAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS  399 (496)
Q Consensus       350 ~~~~~viVIatTn~p~-------------------------~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~  399 (496)
                      ....+.+||+|||...                         .+.|+++.|++.++.|.+++.++...|++.++..
T Consensus       707 vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~  781 (857)
T PRK10865        707 VDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQR  781 (857)
T ss_pred             EeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHH
Confidence            1123456888998631                         1446888999988999999999999998887754

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=99.05  E-value=3.4e-10  Score=115.75  Aligned_cols=155  Identities=14%  Similarity=0.139  Sum_probs=106.7

Q ss_pred             ccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhccee----------eeeecc
Q 010975          214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF----------FNISAS  283 (496)
Q Consensus       214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~----------i~v~~s  283 (496)
                      .|++|+|++.+++.|.+.+....           .+.++||+||+|+||+++|.++|+.+...-          ...+-.
T Consensus         2 ~f~~iiGq~~~~~~L~~~i~~~r-----------l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP   70 (314)
T PRK07399          2 LFANLIGQPLAIELLTAAIKQNR-----------IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP   70 (314)
T ss_pred             cHHHhCCHHHHHHHHHHHHHhCC-----------CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence            48899999999999999885432           236899999999999999999999873211          011111


Q ss_pred             ccc---------cc--------ccC-------C-hHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHh
Q 010975          284 SVV---------SK--------WRG-------D-SEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEAS  334 (496)
Q Consensus       284 ~l~---------~~--------~~G-------~-~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~  334 (496)
                      ++.         ++        ..|       . .-..++.+.+.+..    ....|++||++|.|..            
T Consensus        71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~------------  138 (314)
T PRK07399         71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE------------  138 (314)
T ss_pred             CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH------------
Confidence            111         00        000       0 01234555444432    2346999999998842            


Q ss_pred             hhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhC
Q 010975          335 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL  397 (496)
Q Consensus       335 ~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l  397 (496)
                       ...+.|++.++...   . .++|..|+.++.+-+++++|+.. +.|+.++.++..++++...
T Consensus       139 -~aaNaLLK~LEEPp---~-~~fILi~~~~~~Ll~TI~SRcq~-i~f~~l~~~~~~~~L~~~~  195 (314)
T PRK07399        139 -AAANALLKTLEEPG---N-GTLILIAPSPESLLPTIVSRCQI-IPFYRLSDEQLEQVLKRLG  195 (314)
T ss_pred             -HHHHHHHHHHhCCC---C-CeEEEEECChHhCcHHHHhhceE-EecCCCCHHHHHHHHHHhh
Confidence             23467888887532   2 34566778889999999999965 9999999999999888764

>PRK15115 response regulator GlrR; Provisional

Probab=99.05  E-value=5.9e-10  Score=118.96  Aligned_cols=213  Identities=22%  Similarity=0.263  Sum_probs=128.6

Q ss_pred             hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccccc---
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR---  290 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~---  290 (496)
                      .++|......++.+.+....          .....++|+|++|||||++|++++...   +.+|+.++|..+.....   
T Consensus       135 ~lig~s~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~  204 (444)
T PRK15115        135 AIVTRSPLMLRLLEQARMVA----------QSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESE  204 (444)
T ss_pred             cccccCHHHHHHHHHHHhhc----------cCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHH
Confidence            46776665555554432221          122479999999999999999999876   57899999987633211   


Q ss_pred             --CChHH-------HHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC--------ccccCc
Q 010975          291 --GDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG--------LTQSDE  353 (496)
Q Consensus       291 --G~~e~-------~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~--------~~~~~~  353 (496)
                        |...+       ....++..+   ..++|||||||.|....             +..|+..++.        ......
T Consensus       205 lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~~~-------------q~~L~~~l~~~~~~~~g~~~~~~~  268 (444)
T PRK15115        205 LFGHARGAFTGAVSNREGLFQAA---EGGTLFLDEIGDMPAPL-------------QVKLLRVLQERKVRPLGSNRDIDI  268 (444)
T ss_pred             hcCCCcCCCCCCccCCCCcEEEC---CCCEEEEEccccCCHHH-------------HHHHHHHHhhCCEEeCCCCceeee
Confidence              10000       000112222   24799999999985442             2334444432        111223


Q ss_pred             EEEEEeccCCcc-------cccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccCCcCCc
Q 010975          354 LVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYSGSD  422 (496)
Q Consensus       354 ~viVIatTn~p~-------~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g~s~~d  422 (496)
                      .+.+|+||+.+-       .+.+.+..|+.. +.+..|...+|.+    ++++++......       ......++++..
T Consensus       269 ~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~-~~i~lPpLr~R~eDi~~l~~~~l~~~~~~-------~~~~~~~~~~~a  340 (444)
T PRK15115        269 DVRIISATHRDLPKAMARGEFREDLYYRLNV-VSLKIPALAERTEDIPLLANHLLRQAAER-------HKPFVRAFSTDA  340 (444)
T ss_pred             eEEEEEeCCCCHHHHHHcCCccHHHHHhhce-eeecCCChHhccccHHHHHHHHHHHHHHH-------hCCCCCCcCHHH
Confidence            577888887641       244555566654 7788898888875    445555432111       111234678889


Q ss_pred             hhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHh
Q 010975          423 IRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL  469 (496)
Q Consensus       423 I~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al  469 (496)
                      +..+.++.|.++++++.+.++......+..      .|+.+|+...+
T Consensus       341 ~~~L~~~~WpgNvreL~~~i~~~~~~~~~~------~i~~~~l~~~~  381 (444)
T PRK15115        341 MKRLMTASWPGNVRQLVNVIEQCVALTSSP------VISDALVEQAL  381 (444)
T ss_pred             HHHHHhCCCCChHHHHHHHHHHHHHhCCCC------ccChhhhhhhh
Confidence            999999999999999998887654433222      25566654433

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=5.9e-10  Score=117.10  Aligned_cols=144  Identities=24%  Similarity=0.314  Sum_probs=110.5

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc-cccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCC
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS-SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA  327 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s-~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~  327 (496)
                      -.++||+||||+|||+||-.+|...+.||+.+-.. ++.+-...+--..++.+|+.|.+..-+||++|+|+.|..   ..
T Consensus       538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD---~v  614 (744)
T KOG0741|consen  538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLD---YV  614 (744)
T ss_pred             ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhc---cc
Confidence            35799999999999999999999999999987543 333221112224578899999998889999999999963   22


Q ss_pred             cchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccH-HHHHHhhhhhcccCCCH-HHHHHHHHh
Q 010975          328 RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA-AMLRRLEKRILVPLPDT-EARRAMFES  395 (496)
Q Consensus       328 ~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~-aL~rRf~~~I~~~~P~~-eeR~~Il~~  395 (496)
                      +-....++.++.+|+..+....+.+.+.+|++||...+-+.. .+.+.|+..+.+|..+. ++..+++..
T Consensus       615 pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~  684 (744)
T KOG0741|consen  615 PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE  684 (744)
T ss_pred             ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH
Confidence            344567788888898888877777888999999988765543 57778998888887654 666666654

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=99.02  E-value=6.4e-10  Score=114.35  Aligned_cols=130  Identities=19%  Similarity=0.282  Sum_probs=92.0

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhhcce------------------------eeeeecccccccccCChHHHHHHHHHH
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSVVSKWRGDSEKLIKVLFEL  303 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l~~~------------------------~i~v~~s~l~~~~~G~~e~~l~~lf~~  303 (496)
                      .++.+||+||+|+|||++|+++|+.+...                        ++.+...+- ++  .-.-..++.+.+.
T Consensus        21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~~   97 (328)
T PRK05707         21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVSF   97 (328)
T ss_pred             cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHHH
Confidence            34679999999999999999999988432                        111211000 00  0123456665555


Q ss_pred             hhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhh
Q 010975          304 ARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRI  379 (496)
Q Consensus       304 a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I  379 (496)
                      +..    ....|++||++|.|..             ...+.|++.++.   .+..+++|.+|+.++.+.+.+++|+.. +
T Consensus        98 ~~~~~~~~~~kv~iI~~a~~m~~-------------~aaNaLLK~LEE---Pp~~~~fiL~t~~~~~ll~TI~SRc~~-~  160 (328)
T PRK05707         98 VVQTAQLGGRKVVLIEPAEAMNR-------------NAANALLKSLEE---PSGDTVLLLISHQPSRLLPTIKSRCQQ-Q  160 (328)
T ss_pred             HhhccccCCCeEEEECChhhCCH-------------HHHHHHHHHHhC---CCCCeEEEEEECChhhCcHHHHhhcee-e
Confidence            443    3346999999999843             344778888873   345577788999999999999999976 9


Q ss_pred             cccCCCHHHHHHHHHhhC
Q 010975          380 LVPLPDTEARRAMFESLL  397 (496)
Q Consensus       380 ~~~~P~~eeR~~Il~~~l  397 (496)
                      .|++|+.++....+....
T Consensus       161 ~~~~~~~~~~~~~L~~~~  178 (328)
T PRK05707        161 ACPLPSNEESLQWLQQAL  178 (328)
T ss_pred             eCCCcCHHHHHHHHHHhc
Confidence            999999999888877653

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.01  E-value=1.4e-10  Score=108.42  Aligned_cols=113  Identities=25%  Similarity=0.297  Sum_probs=74.0

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcc----eeeeeecccccccccCChHHHHHHHHHHh----hhcCCcceehhhHHHH
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKT----TFFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAI  320 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~----~~i~v~~s~l~~~~~G~~e~~l~~lf~~a----~~~~p~ILfIDEID~L  320 (496)
                      ..++||.||+|||||.+|+++|+.+..    +++.++++++....  ..+..+..++..+    .....+||||||||+.
T Consensus         3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa   80 (171)
T PF07724_consen    3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA   80 (171)
T ss_dssp             SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence            357999999999999999999999996    99999999887611  0111222222211    1112259999999999


Q ss_pred             HhhhcCCcchhHHhhhhhhhhhhhccCcc--------ccCcEEEEEeccCCcc
Q 010975          321 ISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLPW  365 (496)
Q Consensus       321 ~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~viVIatTn~p~  365 (496)
                      .+..  ..........+++.|+..+++-.        -.-.++++|+|+|--.
T Consensus        81 ~~~~--~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~  131 (171)
T PF07724_consen   81 HPSN--SGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA  131 (171)
T ss_dssp             SHTT--TTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred             cccc--cccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence            7641  12223333466778888876321        2234588999998764

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]

Probab=99.01  E-value=5.8e-10  Score=111.29  Aligned_cols=167  Identities=18%  Similarity=0.138  Sum_probs=114.2

Q ss_pred             hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce------e
Q 010975          204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------F  277 (496)
Q Consensus       204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~------~  277 (496)
                      -.|.+++++..++|+++.+++...+.++...+..            .|+|+|||||||||+...+.|..+-.+      +
T Consensus        29 ~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~l------------Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~   96 (360)
T KOG0990|consen   29 QPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGL------------PHLLFYGPPGTGKTSTILANARDFYSPHPTTSML   96 (360)
T ss_pred             CCCccCCCCchhhhHhcCCchhhHHHHhccCCCC------------CcccccCCCCCCCCCchhhhhhhhcCCCCchhHH
Confidence            3567788888899999999999999988544321            499999999999999999999988542      3


Q ss_pred             eeeecccccccccCChHHHHHHHHHHhhh-------cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccc
Q 010975          278 FNISASSVVSKWRGDSEKLIKVLFELARH-------HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ  350 (496)
Q Consensus       278 i~v~~s~l~~~~~G~~e~~l~~lf~~a~~-------~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~  350 (496)
                      ..+++++-.+..   ..+.-...|...+.       ..+..+++||+|.+..+.+             ++|-..++.   
T Consensus        97 lelnaSd~rgid---~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ-------------nALRRviek---  157 (360)
T KOG0990|consen   97 LELNASDDRGID---PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ-------------NALRRVIEK---  157 (360)
T ss_pred             HHhhccCccCCc---chHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHH-------------HHHHHHHHH---
Confidence            344444433321   11222233444442       2567999999999975532             233333332   


Q ss_pred             cCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975          351 SDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG  402 (496)
Q Consensus       351 ~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~  402 (496)
                      ...++.++..+|.+..+.+++++||.+ +.+.+.+...-...+.+++.....
T Consensus       158 ~t~n~rF~ii~n~~~ki~pa~qsRctr-frf~pl~~~~~~~r~shi~e~e~~  208 (360)
T KOG0990|consen  158 YTANTRFATISNPPQKIHPAQQSRCTR-FRFAPLTMAQQTERQSHIRESEQK  208 (360)
T ss_pred             hccceEEEEeccChhhcCchhhccccc-CCCCCCChhhhhhHHHHHHhcchh
Confidence            233355566789999999999999987 777777777777777777655443

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=1.9e-09  Score=108.25  Aligned_cols=85  Identities=22%  Similarity=0.373  Sum_probs=62.6

Q ss_pred             CcceehhhHHHHHhhhcCCcchhHHhh-hhhhhhhhhccCccc-------cCcEEEEEecc----CCcccccHHHHHHhh
Q 010975          309 PSTIFLDEIDAIISQRGEARSEHEASR-RLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLE  376 (496)
Q Consensus       309 p~ILfIDEID~L~~~r~~~~~~~~~~~-~i~~~Ll~~ld~~~~-------~~~~viVIatT----n~p~~Ld~aL~rRf~  376 (496)
                      .+|+||||||+++...+.+..  +.++ -++-.||-.++|-.-       +..++++||+.    ..|.+|-|.|.-||.
T Consensus       251 ~GIvFIDEIDKIa~~~~~g~~--dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfP  328 (444)
T COG1220         251 NGIVFIDEIDKIAKRGGSGGP--DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFP  328 (444)
T ss_pred             cCeEEEehhhHHHhcCCCCCC--CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCc
Confidence            469999999999877542221  3333 355667777776432       23568888775    567788899999999


Q ss_pred             hhhcccCCCHHHHHHHHHh
Q 010975          377 KRILVPLPDTEARRAMFES  395 (496)
Q Consensus       377 ~~I~~~~P~~eeR~~Il~~  395 (496)
                      ..+++...+.++-..||..
T Consensus       329 IRVEL~~Lt~~Df~rILte  347 (444)
T COG1220         329 IRVELDALTKEDFERILTE  347 (444)
T ss_pred             eEEEcccCCHHHHHHHHcC
Confidence            9999999999998887753

>PRK04132 replication factor C small subunit; Provisional

Probab=98.98  E-value=8.4e-10  Score=124.73  Aligned_cols=129  Identities=19%  Similarity=0.145  Sum_probs=98.5

Q ss_pred             ceeeeeC--CCCChhHHHHHHHHhhh-----cceeeeeecccccccccCChHHHHHHHHHHhhhc------CCcceehhh
Q 010975          250 KGILLFG--PPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHH------APSTIFLDE  316 (496)
Q Consensus       250 ~~vLL~G--PpGtGKT~LAralA~~l-----~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~------~p~ILfIDE  316 (496)
                      -+-+..|  |++.||||+|+++|+++     +.+++++|+++..+      -..++.++..+...      +..|++|||
T Consensus       565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDE  638 (846)
T PRK04132        565 YHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDE  638 (846)
T ss_pred             hhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEEC
Confidence            3556779  99999999999999998     56899999988532      23455555443322      235999999


Q ss_pred             HHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhh
Q 010975          317 IDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL  396 (496)
Q Consensus       317 ID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~  396 (496)
                      +|.|..             ..++.|+..|+.   .+..+.+|.+||++..+.+++++||.. +.|+.|+.++....++..
T Consensus       639 aD~Lt~-------------~AQnALLk~lEe---p~~~~~FILi~N~~~kIi~tIrSRC~~-i~F~~ls~~~i~~~L~~I  701 (846)
T PRK04132        639 ADALTQ-------------DAQQALRRTMEM---FSSNVRFILSCNYSSKIIEPIQSRCAI-FRFRPLRDEDIAKRLRYI  701 (846)
T ss_pred             cccCCH-------------HHHHHHHHHhhC---CCCCeEEEEEeCChhhCchHHhhhceE-EeCCCCCHHHHHHHHHHH
Confidence            999843             234668888873   344577888999999999999999955 999999999999888887


Q ss_pred             CCCCC
Q 010975          397 LPSQT  401 (496)
Q Consensus       397 l~~~~  401 (496)
                      +....
T Consensus       702 ~~~Eg  706 (846)
T PRK04132        702 AENEG  706 (846)
T ss_pred             HHhcC
Confidence            76543

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=98.97  E-value=1.3e-09  Score=120.27  Aligned_cols=132  Identities=19%  Similarity=0.243  Sum_probs=88.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcc--eeeeeecccccccccCChH--HHHH--------HHHHHhhhcCCcceehhhH
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKT--TFFNISASSVVSKWRGDSE--KLIK--------VLFELARHHAPSTIFLDEI  317 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~--~~i~v~~s~l~~~~~G~~e--~~l~--------~lf~~a~~~~p~ILfIDEI  317 (496)
                      .||||.|+||||||++|+++++.+..  +|+.+......+...|...  ..+.        ..+.++   ..++||||||
T Consensus        17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A---~~GvL~lDEi   93 (589)
T TIGR02031        17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA---PRGVLYVDMA   93 (589)
T ss_pred             ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC---CCCcEeccch
Confidence            68999999999999999999998854  5888875433333333320  0000        011112   2269999999


Q ss_pred             HHHHhhhcCCcchhHHhhhhhhhhhhhccCcc----------ccCcEEEEEeccCCcc---cccHHHHHHhhhhhcccC-
Q 010975          318 DAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPW---ELDAAMLRRLEKRILVPL-  383 (496)
Q Consensus       318 D~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~viVIatTn~p~---~Ld~aL~rRf~~~I~~~~-  383 (496)
                      +.+...             +++.|+..|+.-.          .....+.||+|+|..+   .+.+++++||...+.+.. 
T Consensus        94 ~rl~~~-------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~  160 (589)
T TIGR02031        94 NLLDDG-------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDV  160 (589)
T ss_pred             hhCCHH-------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCC
Confidence            998543             3445555554211          1123577888888765   699999999998776654 


Q ss_pred             CCHHHHHHHHHhhC
Q 010975          384 PDTEARRAMFESLL  397 (496)
Q Consensus       384 P~~eeR~~Il~~~l  397 (496)
                      |+.++|.+|++..+
T Consensus       161 ~~~~er~eil~~~~  174 (589)
T TIGR02031       161 ASQDLRVEIVRRER  174 (589)
T ss_pred             CCHHHHHHHHHHHH
Confidence            67888999998876

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>TIGR00368 Mg chelatase-related protein

Probab=98.95  E-value=6.4e-10  Score=120.10  Aligned_cols=145  Identities=28%  Similarity=0.355  Sum_probs=89.1

Q ss_pred             CccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----c--------------
Q 010975          213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----K--------------  274 (496)
Q Consensus       213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----~--------------  274 (496)
                      ..|+|+.|++.+++.+.-.+.              ...+++|.||||||||++++.++..+    +              
T Consensus       189 ~d~~dv~Gq~~~~~al~~aa~--------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g  254 (499)
T TIGR00368       189 LDLKDIKGQQHAKRALEIAAA--------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG  254 (499)
T ss_pred             CCHHHhcCcHHHHhhhhhhcc--------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence            368899999999887765542              23679999999999999999999754    1              


Q ss_pred             ----------ceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhh
Q 010975          275 ----------TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ  344 (496)
Q Consensus       275 ----------~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~  344 (496)
                                .||...+++.......|.....-...+..|..   ++|||||++.+..             .+++.|+..
T Consensus       255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~~~-------------~~~~~L~~~  318 (499)
T TIGR00368       255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEFKR-------------SVLDALREP  318 (499)
T ss_pred             hhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhCCH-------------HHHHHHHHH
Confidence                      12222221111111111110000112333333   7999999988743             233444444


Q ss_pred             ccCcc----------ccCcEEEEEeccCCc------c-----------------cccHHHHHHhhhhhcccCCCHH
Q 010975          345 MDGLT----------QSDELVFVLAATNLP------W-----------------ELDAAMLRRLEKRILVPLPDTE  387 (496)
Q Consensus       345 ld~~~----------~~~~~viVIatTn~p------~-----------------~Ld~aL~rRf~~~I~~~~P~~e  387 (496)
                      |+.-.          .....+.+|+++|.-      .                 .++.+|++||+..+.++.++.+
T Consensus       319 LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~  394 (499)
T TIGR00368       319 IEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE  394 (499)
T ss_pred             HHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence            43211          122457788888852      1                 4888999999999999887755

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.95  E-value=3.8e-09  Score=105.96  Aligned_cols=201  Identities=19%  Similarity=0.270  Sum_probs=114.2

Q ss_pred             cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeecccc
Q 010975          215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSV  285 (496)
Q Consensus       215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s~l  285 (496)
                      |=+.-....+.++|.+.+..|..         ....++||+|++|.|||++++.+...-         ..|++.+.+..-
T Consensus        36 WIgY~~A~~~L~~L~~Ll~~P~~---------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~  106 (302)
T PF05621_consen   36 WIGYPRAKEALDRLEELLEYPKR---------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPE  106 (302)
T ss_pred             eecCHHHHHHHHHHHHHHhCCcc---------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCC
Confidence            44444444555566666655532         123589999999999999999999754         245666654221


Q ss_pred             cc--------------ccc--CChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc
Q 010975          286 VS--------------KWR--GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT  349 (496)
Q Consensus       286 ~~--------------~~~--G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~  349 (496)
                      .+              .+.  ....+.-..+....+..++.+|+|||+|.+......      ..+.    +++.+..+.
T Consensus       107 p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~------~qr~----~Ln~LK~L~  176 (302)
T PF05621_consen  107 PDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYR------KQRE----FLNALKFLG  176 (302)
T ss_pred             CChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHH------HHHH----HHHHHHHHh
Confidence            11              111  112223333445556667789999999998644211      1122    233332222


Q ss_pred             ccCcEEEEEeccCCc---ccccHHHHHHhhhhhcccC-CCHHHHHHHHHhhCCCCCCCCCCCc------ceeeecccCCc
Q 010975          350 QSDELVFVLAATNLP---WELDAAMLRRLEKRILVPL-PDTEARRAMFESLLPSQTGEESLPY------DLLVERTEGYS  419 (496)
Q Consensus       350 ~~~~~viVIatTn~p---~~Ld~aL~rRf~~~I~~~~-P~~eeR~~Il~~~l~~~~~~~~~~l------~~la~~t~g~s  419 (496)
                      +....-+|.+.|...   -.-|+.+.+||+. +.+|. -..++...++..+-...+.....++      ..+-..++|.+
T Consensus       177 NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i  255 (302)
T PF05621_consen  177 NELQIPIVGVGTREAYRALRTDPQLASRFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI  255 (302)
T ss_pred             hccCCCeEEeccHHHHHHhccCHHHHhccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch
Confidence            222222233333222   2367889999976 55544 2445556666666554444432222      23456688877


Q ss_pred             CCchhhcchhhhccHHH
Q 010975          420 GSDIRLVSKEAAMQPLR  436 (496)
Q Consensus       420 ~~dI~~l~~~A~~~a~r  436 (496)
                      | ++..+++.|+..|++
T Consensus       256 G-~l~~ll~~aA~~AI~  271 (302)
T PF05621_consen  256 G-ELSRLLNAAAIAAIR  271 (302)
T ss_pred             H-HHHHHHHHHHHHHHh
Confidence            5 788999999988876

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]

Probab=98.93  E-value=2.6e-09  Score=110.64  Aligned_cols=161  Identities=25%  Similarity=0.320  Sum_probs=103.5

Q ss_pred             CccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeec----------
Q 010975          213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA----------  282 (496)
Q Consensus       213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~----------  282 (496)
                      ..|..++|++..|..|.-....|.            -.++||.|+.||||||++|+||.-+.---+...|          
T Consensus        14 ~pf~aivGqd~lk~aL~l~av~P~------------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~   81 (423)
T COG1239          14 LPFTAIVGQDPLKLALGLNAVDPQ------------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPE   81 (423)
T ss_pred             cchhhhcCchHHHHHHhhhhcccc------------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChh
Confidence            347889999999998776544432            2689999999999999999999987211110011          


Q ss_pred             ---c-------------------cccccccCChHHHH------HHHHH----------HhhhcCCcceehhhHHHHHhhh
Q 010975          283 ---S-------------------SVVSKWRGDSEKLI------KVLFE----------LARHHAPSTIFLDEIDAIISQR  324 (496)
Q Consensus       283 ---s-------------------~l~~~~~G~~e~~l------~~lf~----------~a~~~~p~ILfIDEID~L~~~r  324 (496)
                         .                   .+.+.-.|.++.++      .+..+          .++.+ .+||++||+..|..  
T Consensus        82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL~d--  158 (423)
T COG1239          82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLLDD--  158 (423)
T ss_pred             hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEeccccccH--
Confidence               0                   01111112333311      11111          01122 26999999987742  


Q ss_pred             cCCcchhHHhhhhhhhhhhhcc---------Ccc-ccCcEEEEEeccCCcc-cccHHHHHHhhhhhcccCC-CHHHHHHH
Q 010975          325 GEARSEHEASRRLKTELLIQMD---------GLT-QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLP-DTEARRAM  392 (496)
Q Consensus       325 ~~~~~~~~~~~~i~~~Ll~~ld---------~~~-~~~~~viVIatTn~p~-~Ld~aL~rRf~~~I~~~~P-~~eeR~~I  392 (496)
                                 .+++.||+.+.         |+. ..+.++++|+|+|..+ .|-+.|++||...+.+..| +.++|.+|
T Consensus       159 -----------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~I  227 (423)
T COG1239         159 -----------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEI  227 (423)
T ss_pred             -----------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHH
Confidence                       34455555443         332 2344688899988874 6999999999999988776 78899999


Q ss_pred             HHhhCCC
Q 010975          393 FESLLPS  399 (496)
Q Consensus       393 l~~~l~~  399 (496)
                      .++-+..
T Consensus       228 i~r~~~f  234 (423)
T COG1239         228 IRRRLAF  234 (423)
T ss_pred             HHHHHHh
Confidence            8877654

>TIGR00602 rad24 checkpoint protein rad24

Probab=98.92  E-value=3.1e-09  Score=117.34  Aligned_cols=176  Identities=11%  Similarity=0.107  Sum_probs=106.8

Q ss_pred             hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeee-eec
Q 010975          204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN-ISA  282 (496)
Q Consensus       204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~-v~~  282 (496)
                      ..|.+++.+.+++|++|+++.++.|..++......       ..+.+.++|+||||+|||++++.+|++++..+++ .+.
T Consensus        72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~-------~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~np  144 (637)
T TIGR00602        72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLE-------NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNP  144 (637)
T ss_pred             CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccc-------cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhh
Confidence            45788889999999999999999999887542211       1223459999999999999999999999876544 221


Q ss_pred             c---cccccc------------cCChHHHHHHHHHHhhh----------cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975          283 S---SVVSKW------------RGDSEKLIKVLFELARH----------HAPSTIFLDEIDAIISQRGEARSEHEASRRL  337 (496)
Q Consensus       283 s---~l~~~~------------~G~~e~~l~~lf~~a~~----------~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i  337 (496)
                      .   .....|            .......++.++..+..          ....||+|||++.+... .     .   . .
T Consensus       145 v~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~-----~---~-~  214 (637)
T TIGR00602       145 TLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D-----T---R-A  214 (637)
T ss_pred             hhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h-----H---H-H
Confidence            1   000000            01122334444444431          23469999999987532 1     1   1 1


Q ss_pred             hhhhhh-hccCccccCcEEEEEeccCCcc--------------cccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCC
Q 010975          338 KTELLI-QMDGLTQSDELVFVLAATNLPW--------------ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQ  400 (496)
Q Consensus       338 ~~~Ll~-~ld~~~~~~~~viVIatTn~p~--------------~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~  400 (496)
                      +..++. ...   ..+...+|+++|..+.              .+.+++++  |.. +|.|.+.+..+....|+.++...
T Consensus       215 lq~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E  290 (637)
T TIGR00602       215 LHEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIE  290 (637)
T ss_pred             HHHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhh
Confidence            222332 111   1222233444442221              14477876  554 48999999999888888877654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=98.92  E-value=8.4e-09  Score=101.21  Aligned_cols=169  Identities=17%  Similarity=0.221  Sum_probs=114.5

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-c--ceeeeeec
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-K--TTFFNISA  282 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-~--~~~i~v~~  282 (496)
                      |..++.+.+++.+.+.++....+..... .-.           -.|+++|||+|+||-|.+.++.+++ |  .+=..+..
T Consensus         3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~-~~d-----------~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~   70 (351)
T KOG2035|consen    3 WVDKYRPKSLDELIYHEELANLLKSLSS-TGD-----------FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIET   70 (351)
T ss_pred             chhhcCcchhhhcccHHHHHHHHHHhcc-cCC-----------CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeee
Confidence            4566777888999999999998887664 111           1589999999999999999999988 2  11011100


Q ss_pred             -------------cc--------ccccccCChHH-HHHHHHHHhhhcC---------CcceehhhHHHHHhhhcCCcchh
Q 010975          283 -------------SS--------VVSKWRGDSEK-LIKVLFELARHHA---------PSTIFLDEIDAIISQRGEARSEH  331 (496)
Q Consensus       283 -------------s~--------l~~~~~G~~e~-~l~~lf~~a~~~~---------p~ILfIDEID~L~~~r~~~~~~~  331 (496)
                                   +.        +.....|...+ .+..++++..+.+         ..|++|.|+|.|..+        
T Consensus        71 ~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~d--------  142 (351)
T KOG2035|consen   71 RTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRD--------  142 (351)
T ss_pred             EEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHH--------
Confidence                         00        11111232222 3444555544332         349999999999654        


Q ss_pred             HHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC
Q 010975          332 EASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE  403 (496)
Q Consensus       332 ~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~  403 (496)
                           .+.+|-..|+-   ..+.+.+|..+|....+-+++++|+- .+.+|.|+.++...++...+.+....
T Consensus       143 -----AQ~aLRRTMEk---Ys~~~RlIl~cns~SriIepIrSRCl-~iRvpaps~eeI~~vl~~v~~kE~l~  205 (351)
T KOG2035|consen  143 -----AQHALRRTMEK---YSSNCRLILVCNSTSRIIEPIRSRCL-FIRVPAPSDEEITSVLSKVLKKEGLQ  205 (351)
T ss_pred             -----HHHHHHHHHHH---HhcCceEEEEecCcccchhHHhhhee-EEeCCCCCHHHHHHHHHHHHHHhccc
Confidence                 22334444542   23345677788999899999999994 49999999999999999998877665

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional

Probab=98.91  E-value=1.7e-09  Score=115.74  Aligned_cols=199  Identities=22%  Similarity=0.257  Sum_probs=124.3

Q ss_pred             cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccc--
Q 010975          215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW--  289 (496)
Q Consensus       215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~--  289 (496)
                      +.+++|.......+.+.+....          .....++++|++||||+++|++++...   +.+|+.++|..+....  
T Consensus       142 ~~~ii~~S~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~  211 (457)
T PRK11361        142 WGHILTNSPAMMDICKDTAKIA----------LSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLE  211 (457)
T ss_pred             ccceecccHHHhHHHHHHHHHc----------CCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHH
Confidence            4567777666666555443322          123579999999999999999998865   5789999998764221  


Q ss_pred             ---cCChHH-------HHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------ccc
Q 010975          290 ---RGDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQS  351 (496)
Q Consensus       290 ---~G~~e~-------~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~  351 (496)
                         .|....       .....+..+   ..++|||||||.+....             +..|+..++..        ...
T Consensus       212 ~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l~~~~-------------q~~L~~~l~~~~~~~~~~~~~~  275 (457)
T PRK11361        212 SELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEMPLVL-------------QAKLLRILQEREFERIGGHQTI  275 (457)
T ss_pred             HHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhCCHHH-------------HHHHHHHHhcCcEEeCCCCcee
Confidence               111000       000122222   23799999999985442             23344444321        112


Q ss_pred             CcEEEEEeccCCcc-------cccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccCCcC
Q 010975          352 DELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYSG  420 (496)
Q Consensus       352 ~~~viVIatTn~p~-------~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g~s~  420 (496)
                      ...+.||+||+..-       .+.+.+..|+.. +.+..|...+|.+    ++..++.+....       ......++++
T Consensus       276 ~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~-~~i~~ppLreR~~di~~l~~~~l~~~~~~-------~~~~~~~~~~  347 (457)
T PRK11361        276 KVDIRIIAATNRDLQAMVKEGTFREDLFYRLNV-IHLILPPLRDRREDISLLANHFLQKFSSE-------NQRDIIDIDP  347 (457)
T ss_pred             eeceEEEEeCCCCHHHHHHcCCchHHHHHHhcc-ceecCCChhhchhhHHHHHHHHHHHHHHH-------cCCCCCCcCH
Confidence            23467888887652       355667778755 7888888888875    444444332111       1122346788


Q ss_pred             CchhhcchhhhccHHHHHHHHhhcccc
Q 010975          421 SDIRLVSKEAAMQPLRRLMVLLEGRQE  447 (496)
Q Consensus       421 ~dI~~l~~~A~~~a~rR~~~~le~~~~  447 (496)
                      ..+..+.+..|.++++++.+.++....
T Consensus       348 ~a~~~L~~~~wpgNv~eL~~~~~~~~~  374 (457)
T PRK11361        348 MAMSLLTAWSWPGNIRELSNVIERAVV  374 (457)
T ss_pred             HHHHHHHcCCCCCcHHHHHHHHHHHHH
Confidence            888999999999999998887776543

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=98.91  E-value=1.6e-10  Score=101.94  Aligned_cols=109  Identities=31%  Similarity=0.335  Sum_probs=57.2

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeeecc-cc-----cccccCChHHHHHHHHHHhhh-cCCcceehhhHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNISAS-SV-----VSKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQ  323 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s-~l-----~~~~~G~~e~~l~~lf~~a~~-~~p~ILfIDEID~L~~~  323 (496)
                      |+||+|+||+|||++|+++|+.++..|.+|.+. ++     .+..+-....   ..|+-.+. --..|+++|||++..++
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEiNrappk   77 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEINRAPPK   77 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETGGGS-HH
T ss_pred             CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeecccccCCHH
Confidence            689999999999999999999999999888663 22     2211100000   00000000 00149999999876544


Q ss_pred             hcCCcchhHHhhhhhhhhhhhccCc-------c-ccCcEEEEEeccCCcc-----cccHHHHHHh
Q 010975          324 RGEARSEHEASRRLKTELLIQMDGL-------T-QSDELVFVLAATNLPW-----ELDAAMLRRL  375 (496)
Q Consensus       324 r~~~~~~~~~~~~i~~~Ll~~ld~~-------~-~~~~~viVIatTn~p~-----~Ld~aL~rRf  375 (496)
                                   ++++|++.|.+.       . .-+...+||||-|..+     .+++++++||
T Consensus        78 -------------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF  129 (131)
T PF07726_consen   78 -------------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF  129 (131)
T ss_dssp             -------------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred             -------------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence                         445566665422       1 1234578899989774     5999999998

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>smart00350 MCM minichromosome maintenance proteins

Probab=98.90  E-value=8.3e-10  Score=120.09  Aligned_cols=166  Identities=24%  Similarity=0.239  Sum_probs=99.0

Q ss_pred             hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeee----ecccccccccCC
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI----SASSVVSKWRGD  292 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v----~~s~l~~~~~G~  292 (496)
                      ++.|++.+|..+.-.+.........-........+|||+|+||||||++|+++++.+....+..    ++..+.......
T Consensus       204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~  283 (509)
T smart00350      204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRD  283 (509)
T ss_pred             cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEc
Confidence            6899999988877665432111000001123335899999999999999999999875433221    222222111000


Q ss_pred             ---hHHHHH-HHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC---------cc-ccCcEEEEE
Q 010975          293 ---SEKLIK-VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG---------LT-QSDELVFVL  358 (496)
Q Consensus       293 ---~e~~l~-~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~---------~~-~~~~~viVI  358 (496)
                         .+..++ ..+..|   ..++++|||+|.+...             .+..|+..|+.         .. .-+.+..||
T Consensus       284 ~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~~~-------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~vi  347 (509)
T smart00350      284 PETREFTLEGGALVLA---DNGVCCIDEFDKMDDS-------------DRTAIHEAMEQQTISIAKAGITTTLNARCSVL  347 (509)
T ss_pred             cCcceEEecCccEEec---CCCEEEEechhhCCHH-------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEE
Confidence               000000 011112   2379999999998533             22334444432         11 112457789


Q ss_pred             eccCCcc-------------cccHHHHHHhhhhh-cccCCCHHHHHHHHHhhCC
Q 010975          359 AATNLPW-------------ELDAAMLRRLEKRI-LVPLPDTEARRAMFESLLP  398 (496)
Q Consensus       359 atTn~p~-------------~Ld~aL~rRf~~~I-~~~~P~~eeR~~Il~~~l~  398 (496)
                      ||+|..+             .+++++++||+.++ ..+.|+.+...+|+++.+.
T Consensus       348 Aa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~  401 (509)
T smart00350      348 AAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD  401 (509)
T ss_pred             EEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence            9998652             59999999998654 4478999999999998764

>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=3.2e-09  Score=109.55  Aligned_cols=134  Identities=26%  Similarity=0.461  Sum_probs=91.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc-cccCC-hHHHHHHHHHHhhh----cCCcceehhhHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD-SEKLIKVLFELARH----HAPSTIFLDEIDAIISQ  323 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~-~~~G~-~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~  323 (496)
                      .+|||.||+|+|||.||+.+|+-++.||...+|..+.. .|+|+ .+..+..++..|..    .+.+|+||||+|++...
T Consensus       227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~  306 (564)
T KOG0745|consen  227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK  306 (564)
T ss_pred             ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence            57999999999999999999999999999999999875 68886 45566666665542    34589999999999844


Q ss_pred             hcCCcchhHH-hhhhhhhhhhhccCcc-----------ccCcEEEEEeccCCc-------ccccHHHHHHhh-hhhcccC
Q 010975          324 RGEARSEHEA-SRRLKTELLIQMDGLT-----------QSDELVFVLAATNLP-------WELDAAMLRRLE-KRILVPL  383 (496)
Q Consensus       324 r~~~~~~~~~-~~~i~~~Ll~~ld~~~-----------~~~~~viVIatTn~p-------~~Ld~aL~rRf~-~~I~~~~  383 (496)
                      ..+-....++ ..-++..||..++|..           .+++ .+.|-|+|-.       ..||.-+.+|.+ .-+-|..
T Consensus       307 ~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd-~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~  385 (564)
T KOG0745|consen  307 AESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGD-TVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGA  385 (564)
T ss_pred             CccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCC-eEEEeccceEEEecccccchHHHHHHhhcchhcccCC
Confidence            2221111122 2346677888887531           1111 3334444433       358888888774 4455666


Q ss_pred             C
Q 010975          384 P  384 (496)
Q Consensus       384 P  384 (496)
                      |
T Consensus       386 ~  386 (564)
T KOG0745|consen  386 P  386 (564)
T ss_pred             C
Confidence            6

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=98.89  E-value=1.4e-09  Score=120.41  Aligned_cols=53  Identities=36%  Similarity=0.543  Sum_probs=44.4

Q ss_pred             CCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce
Q 010975          210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT  276 (496)
Q Consensus       210 ~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~  276 (496)
                      .|..-+++++|++++++.+...+..              .++++|+||||||||++++++++.++..
T Consensus        12 ~~~~~~~~viG~~~a~~~l~~a~~~--------------~~~~ll~G~pG~GKT~la~~la~~l~~~   64 (608)
T TIGR00764        12 VPERLIDQVIGQEEAVEIIKKAAKQ--------------KRNVLLIGEPGVGKSMLAKAMAELLPDE   64 (608)
T ss_pred             cchhhHhhccCHHHHHHHHHHHHHc--------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence            3445588999999999999887753              2489999999999999999999988543

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=98.89  E-value=9.3e-10  Score=118.02  Aligned_cols=215  Identities=21%  Similarity=0.214  Sum_probs=132.2

Q ss_pred             cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccc--
Q 010975          215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW--  289 (496)
Q Consensus       215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~--  289 (496)
                      ...++|.......+.+.+....          .....+++.|++||||+++|++++...   +.+|+.++|..+....  
T Consensus       133 ~~~lig~s~~~~~v~~~i~~~a----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~  202 (463)
T TIGR01818       133 SAELIGEAPAMQEVFRAIGRLS----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE  202 (463)
T ss_pred             ccceeecCHHHHHHHHHHHHHh----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence            3458888777777766553321          123579999999999999999999875   5789999998763321  


Q ss_pred             ---cCC----hHHHHH---HHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------ccc
Q 010975          290 ---RGD----SEKLIK---VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQS  351 (496)
Q Consensus       290 ---~G~----~e~~l~---~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~  351 (496)
                         .|.    ......   ..+..   ...++||||||+.|....             +..|+..++.-        ...
T Consensus       203 ~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~ei~~l~~~~-------------q~~ll~~l~~~~~~~~~~~~~~  266 (463)
T TIGR01818       203 SELFGHEKGAFTGANTRRQGRFEQ---ADGGTLFLDEIGDMPLDA-------------QTRLLRVLADGEFYRVGGRTPI  266 (463)
T ss_pred             HHhcCCCCCCCCCcccCCCCcEEE---CCCCeEEEEchhhCCHHH-------------HHHHHHHHhcCcEEECCCCcee
Confidence               111    000000   11222   234799999999985442             23344444321        112


Q ss_pred             CcEEEEEeccCCcc-------cccHHHHHHhhhhhcccCCCHHHHH----HHHHhhCCCCCCCCCCCcceeeecccCCcC
Q 010975          352 DELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARR----AMFESLLPSQTGEESLPYDLLVERTEGYSG  420 (496)
Q Consensus       352 ~~~viVIatTn~p~-------~Ld~aL~rRf~~~I~~~~P~~eeR~----~Il~~~l~~~~~~~~~~l~~la~~t~g~s~  420 (496)
                      ...+.||++|+..-       .+.+.|..|+.. +.+..|...+|.    .++++++......       ......++++
T Consensus       267 ~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~-~~i~lPpLr~R~~Di~~l~~~~l~~~~~~-------~~~~~~~~~~  338 (463)
T TIGR01818       267 KVDVRIVAATHQNLEALVRQGKFREDLFHRLNV-IRIHLPPLRERREDIPRLARHFLALAARE-------LDVEPKLLDP  338 (463)
T ss_pred             eeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCc-ceecCCCcccchhhHHHHHHHHHHHHHHH-------hCCCCCCcCH
Confidence            23466777776552       355677778754 566666655554    4555555433211       1112346888


Q ss_pred             CchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHh
Q 010975          421 SDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL  469 (496)
Q Consensus       421 ~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al  469 (496)
                      ..+..+.+.-|.+++|++.+.++.....+...      .|+.+|+...+
T Consensus       339 ~a~~~L~~~~wpgNvreL~~~~~~~~~~~~~~------~i~~~~l~~~~  381 (463)
T TIGR01818       339 EALERLKQLRWPGNVRQLENLCRWLTVMASGD------EVLVSDLPAEL  381 (463)
T ss_pred             HHHHHHHhCCCCChHHHHHHHHHHHHHhCCCC------cccHHhchHHH
Confidence            99999999999999999998887665443332      26777765444

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=98.86  E-value=3.2e-09  Score=98.35  Aligned_cols=133  Identities=23%  Similarity=0.292  Sum_probs=86.7

Q ss_pred             cchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce-----------------------
Q 010975          220 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-----------------------  276 (496)
Q Consensus       220 G~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~-----------------------  276 (496)
                      |++.+++.|.+.+...           ..+..+||+||+|+||+++|+++|+.+-..                       
T Consensus         1 gq~~~~~~L~~~~~~~-----------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d   69 (162)
T PF13177_consen    1 GQEEIIELLKNLIKSG-----------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD   69 (162)
T ss_dssp             S-HHHHHHHHHHHHCT-----------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred             CcHHHHHHHHHHHHcC-----------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence            7888889888877543           234569999999999999999999988221                       


Q ss_pred             eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccC
Q 010975          277 FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD  352 (496)
Q Consensus       277 ~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~  352 (496)
                      ++.++......   .-....++.+.+.+..    ....|++|||+|.|..             ...++|++.|+   ..+
T Consensus        70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~-------------~a~NaLLK~LE---epp  130 (162)
T PF13177_consen   70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE-------------EAQNALLKTLE---EPP  130 (162)
T ss_dssp             EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H-------------HHHHHHHHHHH---STT
T ss_pred             eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH-------------HHHHHHHHHhc---CCC
Confidence            12221111000   1123556666665543    2345999999998853             34578999987   344


Q ss_pred             cEEEEEeccCCcccccHHHHHHhhhhhcccC
Q 010975          353 ELVFVLAATNLPWELDAAMLRRLEKRILVPL  383 (496)
Q Consensus       353 ~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~  383 (496)
                      ..+.+|.+|+.++.+-+.+++|+.. +.++.
T Consensus       131 ~~~~fiL~t~~~~~il~TI~SRc~~-i~~~~  160 (162)
T PF13177_consen  131 ENTYFILITNNPSKILPTIRSRCQV-IRFRP  160 (162)
T ss_dssp             TTEEEEEEES-GGGS-HHHHTTSEE-EEE--
T ss_pred             CCEEEEEEECChHHChHHHHhhceE-EecCC
Confidence            5577888899999999999999955 66654

...

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=1e-09  Score=115.04  Aligned_cols=47  Identities=45%  Similarity=0.627  Sum_probs=41.0

Q ss_pred             CccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ..|.||+|++.+|+.+.....-              .+|+|++||||||||++|+.+...+
T Consensus       176 ~D~~DV~GQ~~AKrAleiAAAG--------------gHnLl~~GpPGtGKTmla~Rl~~lL  222 (490)
T COG0606         176 PDFKDVKGQEQAKRALEIAAAG--------------GHNLLLVGPPGTGKTMLASRLPGLL  222 (490)
T ss_pred             cchhhhcCcHHHHHHHHHHHhc--------------CCcEEEecCCCCchHHhhhhhcccC
Confidence            3588999999999999887643              3689999999999999999998866

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=98.86  E-value=9.1e-09  Score=102.19  Aligned_cols=191  Identities=16%  Similarity=0.182  Sum_probs=108.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcc-eee--ee-ec----cc----cccc----ccCCh-HH---HHHHHH-HHhhhcC
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKT-TFF--NI-SA----SS----VVSK----WRGDS-EK---LIKVLF-ELARHHA  308 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~-~~i--~v-~~----s~----l~~~----~~G~~-e~---~l~~lf-~~a~~~~  308 (496)
                      ..++|+||+|+|||++++.+++.+.. .+.  .+ +.    .+    +...    ..+.. ..   .+...+ .......
T Consensus        44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~  123 (269)
T TIGR03015        44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK  123 (269)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence            35889999999999999999998752 221  11 11    11    1000    11111 11   122212 2233445


Q ss_pred             CcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc---cc----cHHHHHHhhhhhcc
Q 010975          309 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW---EL----DAAMLRRLEKRILV  381 (496)
Q Consensus       309 p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~---~L----d~aL~rRf~~~I~~  381 (496)
                      +.+|+|||++.+....          ...+..+....   ......+.|+.+. .++   .+    ...+.+|+...+.+
T Consensus       124 ~~vliiDe~~~l~~~~----------~~~l~~l~~~~---~~~~~~~~vvl~g-~~~~~~~l~~~~~~~l~~r~~~~~~l  189 (269)
T TIGR03015       124 RALLVVDEAQNLTPEL----------LEELRMLSNFQ---TDNAKLLQIFLVG-QPEFRETLQSPQLQQLRQRIIASCHL  189 (269)
T ss_pred             CeEEEEECcccCCHHH----------HHHHHHHhCcc---cCCCCeEEEEEcC-CHHHHHHHcCchhHHHHhheeeeeeC
Confidence            6799999998873220          11111121111   1112223333333 221   12    13466788778899


Q ss_pred             cCCCHHHHHHHHHhhCCCCCCCC-----CCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCC
Q 010975          382 PLPDTEARRAMFESLLPSQTGEE-----SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQ  456 (496)
Q Consensus       382 ~~P~~eeR~~Il~~~l~~~~~~~-----~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~  456 (496)
                      +..+.++..+++...+.......     ...++.+.+.+.|.. ..|..++..+...+..+                  .
T Consensus       190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~------------------~  250 (269)
T TIGR03015       190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLE------------------E  250 (269)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHc------------------C
Confidence            99999999999988875443221     223455677788875 45888888777766553                  0


Q ss_pred             CCCCCchhHHHHhhcCC
Q 010975          457 IGPIRPEDVEIALKNTR  473 (496)
Q Consensus       457 ~~~It~eDf~~Al~~~~  473 (496)
                      ...|+.++++.++..++
T Consensus       251 ~~~i~~~~v~~~~~~~~  267 (269)
T TIGR03015       251 KREIGGEEVREVIAEID  267 (269)
T ss_pred             CCCCCHHHHHHHHHHhh
Confidence            12489999999998765

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=98.86  E-value=9.8e-09  Score=105.20  Aligned_cols=127  Identities=13%  Similarity=0.203  Sum_probs=90.2

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcce------------------------eeeeecccccccccCChHHHHHHHHHHh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSVVSKWRGDSEKLIKVLFELA  304 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~------------------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a  304 (496)
                      ++.+||+||+|+||+++|+++|+.+.+.                        ++.+...  .++.  -.-..++.+.+.+
T Consensus        24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~--~~~~--I~id~iR~l~~~~   99 (325)
T PRK06871         24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI--DNKD--IGVDQVREINEKV   99 (325)
T ss_pred             ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc--cCCC--CCHHHHHHHHHHH
Confidence            4679999999999999999999988331                        1111110  0011  1234555555444


Q ss_pred             hh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhc
Q 010975          305 RH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRIL  380 (496)
Q Consensus       305 ~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~  380 (496)
                      ..    ....|++||++|.|..             ...+.||+.++   .++..+++|.+|+.++.+.+.++||+.. +.
T Consensus       100 ~~~~~~g~~KV~iI~~a~~m~~-------------~AaNaLLKtLE---EPp~~~~fiL~t~~~~~llpTI~SRC~~-~~  162 (325)
T PRK06871        100 SQHAQQGGNKVVYIQGAERLTE-------------AAANALLKTLE---EPRPNTYFLLQADLSAALLPTIYSRCQT-WL  162 (325)
T ss_pred             hhccccCCceEEEEechhhhCH-------------HHHHHHHHHhc---CCCCCeEEEEEECChHhCchHHHhhceE-Ee
Confidence            32    3345999999999842             23477888887   3555677888899999999999999966 89


Q ss_pred             ccCCCHHHHHHHHHhh
Q 010975          381 VPLPDTEARRAMFESL  396 (496)
Q Consensus       381 ~~~P~~eeR~~Il~~~  396 (496)
                      +++|+.++..+.+...
T Consensus       163 ~~~~~~~~~~~~L~~~  178 (325)
T PRK06871        163 IHPPEEQQALDWLQAQ  178 (325)
T ss_pred             CCCCCHHHHHHHHHHH
Confidence            9999999888877764

>smart00763 AAA_PrkA PrkA AAA domain

Probab=98.83  E-value=1.4e-08  Score=104.66  Aligned_cols=62  Identities=18%  Similarity=0.249  Sum_probs=48.9

Q ss_pred             cc-hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc-------eeeeeec
Q 010975          215 WE-SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------TFFNISA  282 (496)
Q Consensus       215 l~-dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~-------~~i~v~~  282 (496)
                      |+ +++|++++++++.+++......      .....+.++|+||||+|||++|++|++.++.       +++.+..
T Consensus        49 F~~~~~G~~~~i~~lv~~l~~~a~g------~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~  118 (361)
T smart00763       49 FDHDFFGMEEAIERFVNYFKSAAQG------LEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW  118 (361)
T ss_pred             cchhccCcHHHHHHHHHHHHHHHhc------CCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence            45 8999999999999988654321      1123356899999999999999999999966       7777765

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]

Probab=98.81  E-value=2.4e-09  Score=108.20  Aligned_cols=207  Identities=21%  Similarity=0.234  Sum_probs=133.3

Q ss_pred             CCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccc
Q 010975          209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV  285 (496)
Q Consensus       209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l  285 (496)
                      ......|+.+++.....+.+.+.....          ......+||.|.+||||-.+|++-...+   ..+|+.+||..+
T Consensus       197 ~~~~~~F~~~v~~S~~mk~~v~qA~k~----------AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~l  266 (511)
T COG3283         197 AQDVSGFEQIVAVSPKMKHVVEQAQKL----------AMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASL  266 (511)
T ss_pred             cccccchHHHhhccHHHHHHHHHHHHh----------hccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCC
Confidence            345667889999887776665533211          1122469999999999999999998877   789999999776


Q ss_pred             ccc-----ccCChH--HHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc--------c
Q 010975          286 VSK-----WRGDSE--KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q  350 (496)
Q Consensus       286 ~~~-----~~G~~e--~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~  350 (496)
                      -..     ..|..+  +--..+|+.|.+   +.+|+|||..+.+.             ++..|+..+.+-.        .
T Consensus       267 Pe~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEmSp~-------------lQaKLLRFL~DGtFRRVGee~E  330 (511)
T COG3283         267 PEDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEMSPR-------------LQAKLLRFLNDGTFRRVGEDHE  330 (511)
T ss_pred             chhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhcCHH-------------HHHHHHHHhcCCceeecCCcce
Confidence            543     122221  223457777766   79999999877543             4445555554322        1


Q ss_pred             cCcEEEEEeccCCc--cc-----ccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccCCc
Q 010975          351 SDELVFVLAATNLP--WE-----LDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYS  419 (496)
Q Consensus       351 ~~~~viVIatTn~p--~~-----Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g~s  419 (496)
                      -.-.|.||+||..+  +.     .-+.|.-|... +.+..|...||..    +.+.++.+....       +.-....++
T Consensus       331 v~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNV-Ltl~~PpLRer~~di~pL~e~Fv~q~s~e-------lg~p~pkl~  402 (511)
T COG3283         331 VHVDVRVICATQVNLVELVQKGKFREDLFYRLNV-LTLNLPPLRERPQDIMPLAELFVQQFSDE-------LGVPRPKLA  402 (511)
T ss_pred             EEEEEEEEecccccHHHHHhcCchHHHHHHHhhe-eeecCCccccCcccchHHHHHHHHHHHHH-------hCCCCCccC
Confidence            22358899999776  22     33445558865 7888888777764    333333222111       222233455


Q ss_pred             CCchhhcchhhhccHHHHHHHHhhccccCC
Q 010975          420 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVA  449 (496)
Q Consensus       420 ~~dI~~l~~~A~~~a~rR~~~~le~~~~i~  449 (496)
                      +.-+..+.++.|.+++|++.+.+.+.-...
T Consensus       403 ~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~  432 (511)
T COG3283         403 ADLLTVLTRYAWPGNVRQLKNAIYRALTLL  432 (511)
T ss_pred             HHHHHHHHHcCCCccHHHHHHHHHHHHHHh
Confidence            666778899999999999888776654433

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=98.81  E-value=1.3e-08  Score=104.91  Aligned_cols=128  Identities=13%  Similarity=0.183  Sum_probs=89.7

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhhcce------------------------eeeeecccccccccCChHHHHHHHHHH
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSVVSKWRGDSEKLIKVLFEL  303 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l~~~------------------------~i~v~~s~l~~~~~G~~e~~l~~lf~~  303 (496)
                      .+..+||+||+|+||+++|.++|+.+-+.                        ++.+....- ..  .-.-..++.+.+.
T Consensus        23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~--~I~idqiR~l~~~   99 (334)
T PRK07993         23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KS--SLGVDAVREVTEK   99 (334)
T ss_pred             cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-cc--cCCHHHHHHHHHH
Confidence            34679999999999999999999988321                        111111000 00  0123345555544


Q ss_pred             hh----hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhh
Q 010975          304 AR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRI  379 (496)
Q Consensus       304 a~----~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I  379 (496)
                      +.    .....|++||++|.|..             ...+.||+.++   .++..+++|.+|+.++.+.+.++||+.. +
T Consensus       100 ~~~~~~~g~~kV~iI~~ae~m~~-------------~AaNaLLKtLE---EPp~~t~fiL~t~~~~~lLpTIrSRCq~-~  162 (334)
T PRK07993        100 LYEHARLGGAKVVWLPDAALLTD-------------AAANALLKTLE---EPPENTWFFLACREPARLLATLRSRCRL-H  162 (334)
T ss_pred             HhhccccCCceEEEEcchHhhCH-------------HHHHHHHHHhc---CCCCCeEEEEEECChhhChHHHHhcccc-c
Confidence            43    23446999999999843             24477889887   3455677888899999999999999976 8


Q ss_pred             cccCCCHHHHHHHHHh
Q 010975          380 LVPLPDTEARRAMFES  395 (496)
Q Consensus       380 ~~~~P~~eeR~~Il~~  395 (496)
                      .++.|+.++....+..
T Consensus       163 ~~~~~~~~~~~~~L~~  178 (334)
T PRK07993        163 YLAPPPEQYALTWLSR  178 (334)
T ss_pred             cCCCCCHHHHHHHHHH
Confidence            9999998888877754

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=98.81  E-value=7.7e-09  Score=106.68  Aligned_cols=132  Identities=17%  Similarity=0.178  Sum_probs=89.5

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhhccee-------------------------eeeeccccc----------------
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATECKTTF-------------------------FNISASSVV----------------  286 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l~~~~-------------------------i~v~~s~l~----------------  286 (496)
                      .++++||+||+|+||+++|+++|+.+.+.-                         +.+......                
T Consensus        20 l~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~   99 (342)
T PRK06964         20 LPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADAD   99 (342)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhh
Confidence            346899999999999999999999884421                         111110000                


Q ss_pred             --cc----c-cCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEE
Q 010975          287 --SK----W-RGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV  355 (496)
Q Consensus       287 --~~----~-~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~v  355 (496)
                        ++    . ..-.-..++.+.+.+..    ....|++||++|.|..             ...+.||+.++   ..+..+
T Consensus       100 ~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-------------~AaNaLLKtLE---EPp~~t  163 (342)
T PRK06964        100 EGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV-------------AAANALLKTLE---EPPPGT  163 (342)
T ss_pred             cccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH-------------HHHHHHHHHhc---CCCcCc
Confidence              00    0 00112344555444332    2234888999988842             23477888887   455567


Q ss_pred             EEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhh
Q 010975          356 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL  396 (496)
Q Consensus       356 iVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~  396 (496)
                      ++|.+|++++.+.+.++||+.. +.|++|+.++..+.+...
T Consensus       164 ~fiL~t~~~~~LLpTI~SRcq~-i~~~~~~~~~~~~~L~~~  203 (342)
T PRK06964        164 VFLLVSARIDRLLPTILSRCRQ-FPMTVPAPEAAAAWLAAQ  203 (342)
T ss_pred             EEEEEECChhhCcHHHHhcCEE-EEecCCCHHHHHHHHHHc
Confidence            7888999999999999999955 999999999999888763

>PRK10365 transcriptional regulatory protein ZraR; Provisional

Probab=98.81  E-value=2.2e-09  Score=114.34  Aligned_cols=213  Identities=18%  Similarity=0.237  Sum_probs=126.6

Q ss_pred             hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccccc---
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR---  290 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~---  290 (496)
                      .++|.......+.+.+....          .....++++|++||||+++|+++....   +.+|+.++|..+.....   
T Consensus       140 ~lig~s~~~~~~~~~i~~~~----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~  209 (441)
T PRK10365        140 GMVGKSPAMQHLLSEIALVA----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE  209 (441)
T ss_pred             ceEecCHHHHHHHHHHhhcc----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence            46676666665554442221          223579999999999999999998765   57899999987632211   


Q ss_pred             --CC----hHHHH---HHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------cccCc
Q 010975          291 --GD----SEKLI---KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSDE  353 (496)
Q Consensus       291 --G~----~e~~l---~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~~~  353 (496)
                        |.    ..+..   ...+..   ...++|||||||.|....+             ..|+..++.-        .....
T Consensus       210 lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ldei~~l~~~~q-------------~~l~~~l~~~~~~~~~~~~~~~~  273 (441)
T PRK10365        210 LFGHEKGAFTGADKRREGRFVE---ADGGTLFLDEIGDISPMMQ-------------VRLLRAIQEREVQRVGSNQTISV  273 (441)
T ss_pred             hcCCCCCCcCCCCcCCCCceeE---CCCCEEEEeccccCCHHHH-------------HHHHHHHccCcEEeCCCCceeee
Confidence              10    00000   001122   2357999999999865422             2333333321        11122


Q ss_pred             EEEEEeccCCc-c------cccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccCCcCCc
Q 010975          354 LVFVLAATNLP-W------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYSGSD  422 (496)
Q Consensus       354 ~viVIatTn~p-~------~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g~s~~d  422 (496)
                      .+.+|++|+.+ .      .+.+.|..|+.. +.+..|...+|.+    ++++++......       ..+...++++..
T Consensus       274 ~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~-~~i~~ppLreR~~Di~~l~~~~l~~~~~~-------~~~~~~~~~~~a  345 (441)
T PRK10365        274 DVRLIAATHRDLAAEVNAGRFRQDLYYRLNV-VAIEVPSLRQRREDIPLLAGHFLQRFAER-------NRKAVKGFTPQA  345 (441)
T ss_pred             ceEEEEeCCCCHHHHHHcCCchHHHHHHhcc-ceecCCChhhcchhHHHHHHHHHHHHHHH-------hCCCCCCcCHHH
Confidence            35567666554 2      244555556754 7778888887765    455554432111       112234578889


Q ss_pred             hhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHh
Q 010975          423 IRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL  469 (496)
Q Consensus       423 I~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al  469 (496)
                      +..+.+..|.++++++.+.++......+.      ..|+.+|+...+
T Consensus       346 ~~~L~~~~wpgN~reL~~~~~~~~~~~~~------~~i~~~~l~~~~  386 (441)
T PRK10365        346 MDLLIHYDWPGNIRELENAVERAVVLLTG------EYISERELPLAI  386 (441)
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHhCCC------CccchHhCchhh
Confidence            99999999999999999888765443222      225666664433

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=98.78  E-value=2e-08  Score=102.81  Aligned_cols=144  Identities=19%  Similarity=0.211  Sum_probs=95.4

Q ss_pred             chHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------------------eee
Q 010975          221 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------------------FFN  279 (496)
Q Consensus       221 ~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~---------------------~i~  279 (496)
                      ++.+.+.+...+...           ..+..+||+||+|+||+++|.++|+.+.+.                     ++.
T Consensus         9 ~~~~~~~l~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~   77 (319)
T PRK08769          9 QQRAYDQTVAALDAG-----------RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL   77 (319)
T ss_pred             HHHHHHHHHHHHHcC-----------CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE
Confidence            344566666655322           234579999999999999999999977321                     111


Q ss_pred             eecccccccccC------ChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc
Q 010975          280 ISASSVVSKWRG------DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT  349 (496)
Q Consensus       280 v~~s~l~~~~~G------~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~  349 (496)
                      +..   .....|      -.-..++.+.+.+..    ....|++||++|.|..             ...+.||+.++.  
T Consensus        78 i~~---~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~-------------~AaNaLLKtLEE--  139 (319)
T PRK08769         78 VSF---IPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINR-------------AACNALLKTLEE--  139 (319)
T ss_pred             Eec---CCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCH-------------HHHHHHHHHhhC--
Confidence            100   000001      123345555554433    2235999999999842             234778888873  


Q ss_pred             ccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHh
Q 010975          350 QSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFES  395 (496)
Q Consensus       350 ~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~  395 (496)
                       .+..+++|.+|+.++.+.+.++||+.. +.|+.|+.++....+..
T Consensus       140 -Pp~~~~fiL~~~~~~~lLpTIrSRCq~-i~~~~~~~~~~~~~L~~  183 (319)
T PRK08769        140 -PSPGRYLWLISAQPARLPATIRSRCQR-LEFKLPPAHEALAWLLA  183 (319)
T ss_pred             -CCCCCeEEEEECChhhCchHHHhhheE-eeCCCcCHHHHHHHHHH
Confidence             444566777889999999999999966 89999999888877764

>PRK08181 transposase; Validated

Probab=98.78  E-value=5e-09  Score=104.78  Aligned_cols=126  Identities=21%  Similarity=0.290  Sum_probs=74.6

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCC-hHHHHHHHHHHhhhcCCcceehhhHHHHHhhh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD-SEKLIKVLFELARHHAPSTIFLDEIDAIISQR  324 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~-~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r  324 (496)
                      ..+++|+||||||||+|+.++++++   |..++.++..++....... ........+....  ++.+|+|||++.+... 
T Consensus       106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~~-  182 (269)
T PRK08181        106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTKD-  182 (269)
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccCC-
Confidence            3689999999999999999999866   6778888887776643211 1112223333332  3579999999775322 


Q ss_pred             cCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc-c---------ccHHHHHHhh---hhhcccCCCHHHHH
Q 010975          325 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW-E---------LDAAMLRRLE---KRILVPLPDTEARR  390 (496)
Q Consensus       325 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~-~---------Ld~aL~rRf~---~~I~~~~P~~eeR~  390 (496)
                                ......|+..++......   -+|.|||.+. .         +..++.+|+-   ..+.+...+...+.
T Consensus       183 ----------~~~~~~Lf~lin~R~~~~---s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s~R~~~  248 (269)
T PRK08181        183 ----------QAETSVLFELISARYERR---SILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYRRRT  248 (269)
T ss_pred             ----------HHHHHHHHHHHHHHHhCC---CEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCccchhHH
Confidence                      111233455554322222   2556788762 1         3356677762   33555555544433

>PRK12377 putative replication protein; Provisional

Probab=98.77  E-value=4.7e-09  Score=103.76  Aligned_cols=111  Identities=23%  Similarity=0.257  Sum_probs=65.2

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCChH--HHHHHHHHHhhhcCCcceehhhHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSE--KLIKVLFELARHHAPSTIFLDEIDAIISQR  324 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~~e--~~l~~lf~~a~~~~p~ILfIDEID~L~~~r  324 (496)
                      .+++|+||||||||+||.++++++   +..++.++..++.........  .....+++..  ....+|+|||++..... 
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s-  178 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRET-  178 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCCC-
Confidence            589999999999999999999988   566777777776653321100  0111233333  23479999999553211 


Q ss_pred             cCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc-----cccHHHHHHh
Q 010975          325 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW-----ELDAAMLRRL  375 (496)
Q Consensus       325 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~-----~Ld~aL~rRf  375 (496)
                                ......|...++.......  -+|.|||...     .+..++.+|+
T Consensus       179 ----------~~~~~~l~~ii~~R~~~~~--ptiitSNl~~~~l~~~~~~ri~dRl  222 (248)
T PRK12377        179 ----------KNEQVVLNQIIDRRTASMR--SVGMLTNLNHEAMSTLLGERVMDRM  222 (248)
T ss_pred             ----------HHHHHHHHHHHHHHHhcCC--CEEEEcCCCHHHHHHHhhHHHHHHH
Confidence                      1112345555553322222  2455788762     2455566665

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=98.76  E-value=3.1e-08  Score=101.32  Aligned_cols=144  Identities=16%  Similarity=0.132  Sum_probs=96.6

Q ss_pred             chHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce-----------------------e
Q 010975          221 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-----------------------F  277 (496)
Q Consensus       221 ~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~-----------------------~  277 (496)
                      +....+++...+...           ..+..+||+||.|+||+++|+++|+.+...                       +
T Consensus         8 l~~~~~~l~~~~~~~-----------rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~   76 (319)
T PRK06090          8 LVPVWQNWKAGLDAG-----------RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL   76 (319)
T ss_pred             HHHHHHHHHHHHHcC-----------CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE
Confidence            344556666554322           234679999999999999999999987321                       1


Q ss_pred             eeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCc
Q 010975          278 FNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE  353 (496)
Q Consensus       278 i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~  353 (496)
                      +.+.... .++.  -.-..++.+.+.+..    ....|++||++|.|..             ...+.||+.++   ..+.
T Consensus        77 ~~i~p~~-~~~~--I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-------------~AaNaLLKtLE---EPp~  137 (319)
T PRK06090         77 HVIKPEK-EGKS--ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNE-------------SASNALLKTLE---EPAP  137 (319)
T ss_pred             EEEecCc-CCCc--CCHHHHHHHHHHHhhCcccCCceEEEecchhhhCH-------------HHHHHHHHHhc---CCCC
Confidence            1221110 0000  122344554444332    2346999999999842             23477888887   3455


Q ss_pred             EEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHh
Q 010975          354 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFES  395 (496)
Q Consensus       354 ~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~  395 (496)
                      ++++|..|+.++.+-+.++||+.. +.++.|+.++..+.+..
T Consensus       138 ~t~fiL~t~~~~~lLpTI~SRCq~-~~~~~~~~~~~~~~L~~  178 (319)
T PRK06090        138 NCLFLLVTHNQKRLLPTIVSRCQQ-WVVTPPSTAQAMQWLKG  178 (319)
T ss_pred             CeEEEEEECChhhChHHHHhccee-EeCCCCCHHHHHHHHHH
Confidence            577888889999999999999965 99999999988887765

>PRK08116 hypothetical protein; Validated

Probab=98.75  E-value=5.9e-09  Score=104.35  Aligned_cols=123  Identities=18%  Similarity=0.223  Sum_probs=72.9

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccC----ChHHHHHHHHHHhhhcCCcceehhhHHHHH
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRG----DSEKLIKVLFELARHHAPSTIFLDEIDAII  321 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G----~~e~~l~~lf~~a~~~~p~ILfIDEID~L~  321 (496)
                      ..+++|+|+||||||+||.++++++   +.+++.++..++...+..    ........+++...  ...+|+|||+....
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~  191 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER  191 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence            3579999999999999999999987   678888888776554321    11111223333333  23699999994310


Q ss_pred             hhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc-cc----ccHHHHHHhh---hhhcccCCCH
Q 010975          322 SQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE----LDAAMLRRLE---KRILVPLPDT  386 (496)
Q Consensus       322 ~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p-~~----Ld~aL~rRf~---~~I~~~~P~~  386 (496)
                            .     +......|+..++.......  .+|.|||.+ ..    ++.++.+|+-   ..+.+..++.
T Consensus       192 ------~-----t~~~~~~l~~iin~r~~~~~--~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~  251 (268)
T PRK08116        192 ------D-----TEWAREKVYNIIDSRYRKGL--PTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY  251 (268)
T ss_pred             ------C-----CHHHHHHHHHHHHHHHHCCC--CEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence                  0     11223445555654322222  245577765 33    5667888852   2344555553

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.74  E-value=9.2e-09  Score=110.91  Aligned_cols=144  Identities=26%  Similarity=0.315  Sum_probs=88.4

Q ss_pred             ccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc----ceeeeeec------c
Q 010975          214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISA------S  283 (496)
Q Consensus       214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~----~~~i~v~~------s  283 (496)
                      .+.++.|++.+++.+.-.+              ....+++|+||||+|||++++.++..+.    ...+++..      .
T Consensus       189 d~~~v~Gq~~~~~al~laa--------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~  254 (506)
T PRK09862        189 DLSDVIGQEQGKRGLEITA--------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNA  254 (506)
T ss_pred             CeEEEECcHHHHhhhheec--------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhcc
Confidence            5778999988887754322              2336899999999999999999998662    11222111      0


Q ss_pred             -----cc-----cc--------cccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhc
Q 010975          284 -----SV-----VS--------KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM  345 (496)
Q Consensus       284 -----~l-----~~--------~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~l  345 (496)
                           .+     ..        ..+|.....-...+..|..   ++|||||++.+..             .++..|++.|
T Consensus       255 ~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~~~-------------~~~~~L~~~L  318 (506)
T PRK09862        255 ESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEFER-------------RTLDALREPI  318 (506)
T ss_pred             ccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhCCH-------------HHHHHHHHHH
Confidence                 00     00        0111111011123444544   7999999987632             3344455544


Q ss_pred             cCcc----------ccCcEEEEEeccCCcc---------------------cccHHHHHHhhhhhcccCCCHH
Q 010975          346 DGLT----------QSDELVFVLAATNLPW---------------------ELDAAMLRRLEKRILVPLPDTE  387 (496)
Q Consensus       346 d~~~----------~~~~~viVIatTn~p~---------------------~Ld~aL~rRf~~~I~~~~P~~e  387 (496)
                      +.-.          ..+.++.+|+|+|...                     .++.++++||+..+.++.|+.+
T Consensus       319 E~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~  391 (506)
T PRK09862        319 ESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG  391 (506)
T ss_pred             HcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence            3211          1234578899998752                     3778999999999999988654

>PTZ00111 DNA replication licensing factor MCM4; Provisional

Probab=98.73  E-value=1e-08  Score=115.81  Aligned_cols=165  Identities=18%  Similarity=0.187  Sum_probs=95.9

Q ss_pred             hhhcchHHHHHHhhhhcccccCccccc---------cccCccceeeeeCCCCChhHHHHHHHHhhhc-------ceeeee
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFT---------GLLSPWKGILLFGPPGTGKTMLAKAVATECK-------TTFFNI  280 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~---------~~~~~~~~vLL~GPpGtGKT~LAralA~~l~-------~~~i~v  280 (496)
                      .|.|.+.+|+.|.-.+...........         ...+...+|||+|+||||||.+|+++++...       .++..+
T Consensus       451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v  530 (915)
T PTZ00111        451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV  530 (915)
T ss_pred             eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence            589999999987655533221100000         1133445899999999999999999998653       233333


Q ss_pred             ecccccccccCChHH--HHH-HHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc---------
Q 010975          281 SASSVVSKWRGDSEK--LIK-VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL---------  348 (496)
Q Consensus       281 ~~s~l~~~~~G~~e~--~l~-~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~---------  348 (496)
                      .+..... +.+...+  .++ ..+..|   ..++++|||+|.+...             .+..|+..|+.-         
T Consensus       531 gLTa~~~-~~d~~tG~~~le~GaLvlA---dgGtL~IDEidkms~~-------------~Q~aLlEaMEqqtIsI~KaGi  593 (915)
T PTZ00111        531 GLTASIK-FNESDNGRAMIQPGAVVLA---NGGVCCIDELDKCHNE-------------SRLSLYEVMEQQTVTIAKAGI  593 (915)
T ss_pred             cccchhh-hcccccCcccccCCcEEEc---CCCeEEecchhhCCHH-------------HHHHHHHHHhCCEEEEecCCc
Confidence            3332211 0000000  000 011122   2379999999998533             223344444321         


Q ss_pred             -cccCcEEEEEeccCCcc-------------cccHHHHHHhhhhh-cccCCCHHHHHHHHHhhCC
Q 010975          349 -TQSDELVFVLAATNLPW-------------ELDAAMLRRLEKRI-LVPLPDTEARRAMFESLLP  398 (496)
Q Consensus       349 -~~~~~~viVIatTn~p~-------------~Ld~aL~rRf~~~I-~~~~P~~eeR~~Il~~~l~  398 (496)
                       ..-..++.||||+|..+             .++++|++||+.+. .++.|+.+.=..|.++++.
T Consensus       594 ~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~  658 (915)
T PTZ00111        594 VATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK  658 (915)
T ss_pred             ceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHH
Confidence             11234578999998752             38899999998654 4466777776677666654

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=98.72  E-value=9.2e-08  Score=99.92  Aligned_cols=235  Identities=18%  Similarity=0.221  Sum_probs=144.6

Q ss_pred             chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeeccccccc--
Q 010975          216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSK--  288 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~s~l~~~--  288 (496)
                      ..+.|.+..+..+.+++..++...        .+.++.+.|-||||||.+..-+...+     +...++++|.++...  
T Consensus       150 ~~l~gRe~e~~~v~~F~~~hle~~--------t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a  221 (529)
T KOG2227|consen  150 GTLKGRELEMDIVREFFSLHLELN--------TSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA  221 (529)
T ss_pred             CCccchHHHHHHHHHHHHhhhhcc--------cCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence            459999999999999997766432        34679999999999999988776655     224578888764321  


Q ss_pred             --------c----c-CChHHHHHHHHH-Hhhhc-CCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCc
Q 010975          289 --------W----R-GDSEKLIKVLFE-LARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE  353 (496)
Q Consensus       289 --------~----~-G~~e~~l~~lf~-~a~~~-~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~  353 (496)
                              +    . +.........|. ..... .+-|+++||+|.|....+          .   .|+...+.-.....
T Consensus       222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~----------~---vLy~lFewp~lp~s  288 (529)
T KOG2227|consen  222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ----------T---VLYTLFEWPKLPNS  288 (529)
T ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc----------c---eeeeehhcccCCcc
Confidence                    1    1 111222222222 22222 356899999999984422          1   23333333344566


Q ss_pred             EEEEEeccCCcccccHHHHH---Hh---hhhhcccCCCHHHHHHHHHhhCCCCCCCCCC--CcceeeecccCCcCCchhh
Q 010975          354 LVFVLAATNLPWELDAAMLR---RL---EKRILVPLPDTEARRAMFESLLPSQTGEESL--PYDLLVERTEGYSGSDIRL  425 (496)
Q Consensus       354 ~viVIatTn~p~~Ld~aL~r---Rf---~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~--~l~~la~~t~g~s~~dI~~  425 (496)
                      ++++|+.+|..+.-|..|-+   |.   ...+.|++|+.++..+|+...+.........  .++-+|+...|.|| |++.
T Consensus       289 r~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRk  367 (529)
T KOG2227|consen  289 RIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRK  367 (529)
T ss_pred             eeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHH
Confidence            78888899988765544443   21   4568899999999999999999877655332  35557777787775 7765


Q ss_pred             cchhhhccHHHHHHHHhhcc--c----cCCCCCCCCCCCCCCchhHHHHhhcCCCCcc
Q 010975          426 VSKEAAMQPLRRLMVLLEGR--Q----EVAPDDELPQIGPIRPEDVEIALKNTRPSAH  477 (496)
Q Consensus       426 l~~~A~~~a~rR~~~~le~~--~----~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~  477 (496)
                      +.+-     .|+++...|..  .    ...+.+...+...|..+++-.++.++--+..
T Consensus       368 aLdv-----~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~  420 (529)
T KOG2227|consen  368 ALDV-----CRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPS  420 (529)
T ss_pred             HHHH-----HHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccChh
Confidence            4432     22222222211  1    1112222122245778888888888765443

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=98.72  E-value=7.3e-09  Score=93.13  Aligned_cols=126  Identities=26%  Similarity=0.387  Sum_probs=73.9

Q ss_pred             cchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc---ceeeeeecccccccccCChHHH
Q 010975          220 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSKWRGDSEKL  296 (496)
Q Consensus       220 G~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~s~l~~~~~G~~e~~  296 (496)
                      |.....+++.+.+....          .....|+|+|+|||||+++|++++...+   .+++.+++..+.          
T Consensus         2 G~S~~~~~l~~~l~~~a----------~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~----------   61 (138)
T PF14532_consen    2 GKSPAMRRLRRQLERLA----------KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP----------   61 (138)
T ss_dssp             -SCHHHHHHHHHHHHHH----------CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC----------
T ss_pred             CCCHHHHHHHHHHHHHh----------CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc----------
Confidence            44555555555553322          2235799999999999999999999875   366777766542          


Q ss_pred             HHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc-c------cccH
Q 010975          297 IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-W------ELDA  369 (496)
Q Consensus       297 l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p-~------~Ld~  369 (496)
                       ..+++.+   ..++|+|+|+|.+...             .+..|+..++......  +.+|+++..+ .      .+++
T Consensus        62 -~~~l~~a---~~gtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~~--~RlI~ss~~~l~~l~~~~~~~~  122 (138)
T PF14532_consen   62 -AELLEQA---KGGTLYLKNIDRLSPE-------------AQRRLLDLLKRQERSN--VRLIASSSQDLEELVEEGRFSP  122 (138)
T ss_dssp             -HHHHHHC---TTSEEEEECGCCS-HH-------------HHHHHHHHHHHCTTTT--SEEEEEECC-CCCHHHHSTHHH
T ss_pred             -HHHHHHc---CCCEEEECChHHCCHH-------------HHHHHHHHHHhcCCCC--eEEEEEeCCCHHHHhhccchhH
Confidence             3455555   4489999999988543             2334555554322222  3344455433 2      3667


Q ss_pred             HHHHHhhhhhcccCCC
Q 010975          370 AMLRRLEKRILVPLPD  385 (496)
Q Consensus       370 aL~rRf~~~I~~~~P~  385 (496)
                      .|..|+.. +.+..|+
T Consensus       123 ~L~~~l~~-~~i~lPp  137 (138)
T PF14532_consen  123 DLYYRLSQ-LEIHLPP  137 (138)
T ss_dssp             HHHHHCST-CEEEE--
T ss_pred             HHHHHhCC-CEEeCCC
Confidence            77778754 4555553

>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]

Probab=98.72  E-value=3.2e-08  Score=107.52  Aligned_cols=230  Identities=20%  Similarity=0.225  Sum_probs=142.5

Q ss_pred             chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----------cceeeeeecccc
Q 010975          216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISASSV  285 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----------~~~~i~v~~s~l  285 (496)
                      +.|.+.+.....|..++...+...       .....+.+.|-||||||.+++.+-.++          ...++.||+..+
T Consensus       396 ~sLpcRe~E~~~I~~f~~~~i~~~-------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l  468 (767)
T KOG1514|consen  396 ESLPCRENEFSEIEDFLRSFISDQ-------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL  468 (767)
T ss_pred             ccccchhHHHHHHHHHHHhhcCCC-------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence            457888888888888776654321       112469999999999999999999977          356888888766


Q ss_pred             ccc----------ccCCh------HHHHHHHHHHh-hhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc
Q 010975          286 VSK----------WRGDS------EKLIKVLFELA-RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL  348 (496)
Q Consensus       286 ~~~----------~~G~~------e~~l~~lf~~a-~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~  348 (496)
                      .+.          +.|+.      -..+..-|... ....++||+|||+|.|....+             +-|.+.+|..
T Consensus       469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q-------------dVlYn~fdWp  535 (767)
T KOG1514|consen  469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ-------------DVLYNIFDWP  535 (767)
T ss_pred             cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH-------------HHHHHHhcCC
Confidence            542          11221      12222233311 224568999999999986532             3366667766


Q ss_pred             cccCcEEEEEeccCCccc----ccHHHHHHhh-hhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCch
Q 010975          349 TQSDELVFVLAATNLPWE----LDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDI  423 (496)
Q Consensus       349 ~~~~~~viVIatTn~p~~----Ld~aL~rRf~-~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI  423 (496)
                      ...+..++||+.+|..+.    +...+-+|++ ..+.|.+++.++..+|+...+.....-.+..++-+++.....||+  
T Consensus       536 t~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGD--  613 (767)
T KOG1514|consen  536 TLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGD--  613 (767)
T ss_pred             cCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhcccc--
Confidence            677777888888877652    2333344653 448899999999999999998765222222233334444444432  


Q ss_pred             hhcchhhhccHHHHHHHHhhccccCCCCC----CCCCCCCCCchhHHHHhhcCCCCccc
Q 010975          424 RLVSKEAAMQPLRRLMVLLEGRQEVAPDD----ELPQIGPIRPEDVEIALKNTRPSAHL  478 (496)
Q Consensus       424 ~~l~~~A~~~a~rR~~~~le~~~~i~~~~----~~~~~~~It~eDf~~Al~~~~Ps~~~  478 (496)
                                 .||++...++..+++...    .......|++-|+.+|++.+..+...
T Consensus       614 -----------aRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~~~  661 (767)
T KOG1514|consen  614 -----------ARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASPYI  661 (767)
T ss_pred             -----------HHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhhHH
Confidence                       233333222222222111    11122458999999999999776543

>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=3.6e-08  Score=111.20  Aligned_cols=178  Identities=23%  Similarity=0.359  Sum_probs=124.9

Q ss_pred             hhhCCCCCccchhhcc-hHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----------c
Q 010975          206 IIRGSPDVKWESIKGL-ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------K  274 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~-e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----------~  274 (496)
                      ........+++.++|. ++-.+++.+++....+            ++.+|.|.||+|||.++.-+|+..          +
T Consensus       176 l~p~a~~gkldPvigr~deeirRvi~iL~Rrtk------------~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~  243 (898)
T KOG1051|consen  176 LTPRARQGKLDPVIGRHDEEIRRVIEILSRKTK------------NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKD  243 (898)
T ss_pred             cChhhhccCCCCccCCchHHHHHHHHHHhccCC------------CCceEEecCCCCchhHHHHHHHHhhcCCCCccccc
Confidence            3333334557889998 8888888888865432            688999999999999999999977          4


Q ss_pred             ceeeeeecccccc--cccCChHHHHHHHHHHhhh-cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcccc
Q 010975          275 TTFFNISASSVVS--KWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS  351 (496)
Q Consensus       275 ~~~i~v~~s~l~~--~~~G~~e~~l~~lf~~a~~-~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~  351 (496)
                      ..++.++...+..  ++.|+.+.+++.+.+++.. ....||||||++-+.+..... +..+..+.+...|        .+
T Consensus       244 ~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~-~~~d~~nlLkp~L--------~r  314 (898)
T KOG1051|consen  244 KKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNY-GAIDAANLLKPLL--------AR  314 (898)
T ss_pred             cceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcc-hHHHHHHhhHHHH--------hc
Confidence            5567777765543  6789999999999998884 455699999999997764331 1112222222111        23


Q ss_pred             CcEEEEEeccC-Ccc----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCC
Q 010975          352 DELVFVLAATN-LPW----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL  406 (496)
Q Consensus       352 ~~~viVIatTn-~p~----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~  406 (496)
                      +. +.+|+||. ..+    +-+|++-+||+. +.++.|+.+....|++.....+..+++.
T Consensus       315 g~-l~~IGatT~e~Y~k~iekdPalErrw~l-~~v~~pS~~~~~~iL~~l~~~~e~~hg~  372 (898)
T KOG1051|consen  315 GG-LWCIGATTLETYRKCIEKDPALERRWQL-VLVPIPSVENLSLILPGLSERYEVHHGV  372 (898)
T ss_pred             CC-eEEEecccHHHHHHHHhhCcchhhCcce-eEeccCcccchhhhhhhhhhhhccccCC
Confidence            33 55666554 332    478999999987 8999999888788888777665544433

>PRK07952 DNA replication protein DnaC; Validated

Probab=98.64  E-value=2.6e-08  Score=98.31  Aligned_cols=69  Identities=25%  Similarity=0.365  Sum_probs=49.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCCh---HHHHHHHHHHhhhcCCcceehhhHHHH
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS---EKLIKVLFELARHHAPSTIFLDEIDAI  320 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~~---e~~l~~lf~~a~~~~p~ILfIDEID~L  320 (496)
                      .+++|+|+||||||+|+.++|+++   +..++.++..++........   ......+++...  ...+|+|||++..
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~  174 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ  174 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence            589999999999999999999988   77888888877765432211   111223444333  3579999999664

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=98.64  E-value=6.4e-08  Score=99.47  Aligned_cols=130  Identities=18%  Similarity=0.216  Sum_probs=87.2

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhhcc-------------------------eeeeeecccccccccC-----ChHHHH
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATECKT-------------------------TFFNISASSVVSKWRG-----DSEKLI  297 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l~~-------------------------~~i~v~~s~l~~~~~G-----~~e~~l  297 (496)
                      .+..+||+||+|+|||++|+.+|+.+..                         .++.++...-. +..|     -.-..+
T Consensus        20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~i   98 (325)
T PRK08699         20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDAV   98 (325)
T ss_pred             cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHHH
Confidence            3467999999999999999999998732                         12333221100 0001     123456


Q ss_pred             HHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHH
Q 010975          298 KVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR  373 (496)
Q Consensus       298 ~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~r  373 (496)
                      +.+.+.+..    ....|++||+++.|..             ...+.+++.++...   ..+.+|.+|++++.+.+.+++
T Consensus        99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~-------------~a~naLLk~LEep~---~~~~~Ilvth~~~~ll~ti~S  162 (325)
T PRK08699         99 REIIDNVYLTSVRGGLRVILIHPAESMNL-------------QAANSLLKVLEEPP---PQVVFLLVSHAADKVLPTIKS  162 (325)
T ss_pred             HHHHHHHhhCcccCCceEEEEechhhCCH-------------HHHHHHHHHHHhCc---CCCEEEEEeCChHhChHHHHH
Confidence            666665543    2345999999988732             23356777776542   224466688888899999999


Q ss_pred             HhhhhhcccCCCHHHHHHHHHh
Q 010975          374 RLEKRILVPLPDTEARRAMFES  395 (496)
Q Consensus       374 Rf~~~I~~~~P~~eeR~~Il~~  395 (496)
                      |+.. +.|+.|+.++....++.
T Consensus       163 Rc~~-~~~~~~~~~~~~~~L~~  183 (325)
T PRK08699        163 RCRK-MVLPAPSHEEALAYLRE  183 (325)
T ss_pred             Hhhh-hcCCCCCHHHHHHHHHh
Confidence            9965 99999999988877754

>PRK06835 DNA replication protein DnaC; Validated

Probab=98.61  E-value=2.6e-08  Score=102.36  Aligned_cols=112  Identities=21%  Similarity=0.329  Sum_probs=67.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCC---hHHHHHHHHHHhhhcCCcceehhhHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD---SEKLIKVLFELARHHAPSTIFLDEIDAIISQ  323 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~---~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~  323 (496)
                      .+++|+||||||||+|+.++|+++   |..++.++..++.......   ........++...  ...+|+|||+......
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~~t  261 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEKIT  261 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCCCC
Confidence            689999999999999999999988   7788888888776543210   0011111122222  3469999999654211


Q ss_pred             hcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc-cc----ccHHHHHHhh
Q 010975          324 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE----LDAAMLRRLE  376 (496)
Q Consensus       324 r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p-~~----Ld~aL~rRf~  376 (496)
                                 ......|+..++........  +|.|||.+ ..    +++++.+|+.
T Consensus       262 -----------~~~~~~Lf~iin~R~~~~k~--tIiTSNl~~~el~~~~~eri~SRL~  306 (329)
T PRK06835        262 -----------EFSKSELFNLINKRLLRQKK--MIISTNLSLEELLKTYSERISSRLL  306 (329)
T ss_pred             -----------HHHHHHHHHHHHHHHHCCCC--EEEECCCCHHHHHHHHhHHHHHHHH
Confidence                       12224455555533222222  44567754 33    4567777763

>PRK06526 transposase; Provisional

Probab=98.59  E-value=2.6e-08  Score=98.91  Aligned_cols=71  Identities=21%  Similarity=0.320  Sum_probs=47.0

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCC-hHHHHHHHHHHhhhcCCcceehhhHHHH
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD-SEKLIKVLFELARHHAPSTIFLDEIDAI  320 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~-~e~~l~~lf~~a~~~~p~ILfIDEID~L  320 (496)
                      ...+++|+||||||||+||.+++.++   |..+..++..++....... ..+.+...+...  ..+.+|+|||++.+
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~  171 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYI  171 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccC
Confidence            34689999999999999999999876   6666666666655432110 011122222222  33579999999865

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=98.56  E-value=5.1e-08  Score=108.03  Aligned_cols=52  Identities=35%  Similarity=0.551  Sum_probs=44.1

Q ss_pred             CCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      ..|+..|++++|++++++.|...+..              .++++|+||||||||++++++++.+.
T Consensus        24 ~~~~~~~~~vigq~~a~~~L~~~~~~--------------~~~~l~~G~~G~GKttla~~l~~~l~   75 (637)
T PRK13765         24 EVPERLIDQVIGQEHAVEVIKKAAKQ--------------RRHVMMIGSPGTGKSMLAKAMAELLP   75 (637)
T ss_pred             ccCcccHHHcCChHHHHHHHHHHHHh--------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence            34667799999999999999886643              14799999999999999999999773

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=98.54  E-value=2.2e-08  Score=94.23  Aligned_cols=69  Identities=29%  Similarity=0.507  Sum_probs=45.8

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCCh-HHHHHHHHHHhhhcCCcceehhhHH
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEID  318 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~~-e~~l~~lf~~a~~~~p~ILfIDEID  318 (496)
                      ...+++|+||||||||+||.++++++   |.++..++..++........ .......+....  ...+|+|||+.
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG  118 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLG  118 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCT
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccc
Confidence            34789999999999999999999977   78888888887766432211 111223333333  24699999994

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=1.9e-07  Score=105.53  Aligned_cols=129  Identities=22%  Similarity=0.267  Sum_probs=91.2

Q ss_pred             hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccc-------
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV-------  286 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~-------  286 (496)
                      .|+|++++...|.+.+.....-.  .. . .+...++|.||.|+|||-||+++|..+   .-.++.++++++.       
T Consensus       563 ~V~gQ~eAv~aIa~AI~~sr~gl--~~-~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsklig  638 (898)
T KOG1051|consen  563 RVIGQDEAVAAIAAAIRRSRAGL--KD-P-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIG  638 (898)
T ss_pred             hccchHHHHHHHHHHHHhhhccc--CC-C-CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccC
Confidence            59999999999999886543211  01 0 355679999999999999999999988   4568999998522       


Q ss_pred             --ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------cccCcEEE
Q 010975          287 --SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSDELVF  356 (496)
Q Consensus       287 --~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~~~~vi  356 (496)
                        ..|+|..+.  ..+.+..+....+||+|||||+-.+             .+++.|++.+|.-        .-.-.+++
T Consensus       639 sp~gyvG~e~g--g~LteavrrrP~sVVLfdeIEkAh~-------------~v~n~llq~lD~GrltDs~Gr~Vd~kN~I  703 (898)
T KOG1051|consen  639 SPPGYVGKEEG--GQLTEAVKRRPYSVVLFEEIEKAHP-------------DVLNILLQLLDRGRLTDSHGREVDFKNAI  703 (898)
T ss_pred             CCcccccchhH--HHHHHHHhcCCceEEEEechhhcCH-------------HHHHHHHHHHhcCccccCCCcEeeccceE
Confidence              235665443  3667777777779999999988532             2345555666532        22335688


Q ss_pred             EEeccCCc
Q 010975          357 VLAATNLP  364 (496)
Q Consensus       357 VIatTn~p  364 (496)
                      ||+|+|.-
T Consensus       704 ~IMTsn~~  711 (898)
T KOG1051|consen  704 FIMTSNVG  711 (898)
T ss_pred             EEEecccc
Confidence            99998763

>PF13173 AAA_14: AAA domain

Probab=98.53  E-value=6.7e-08  Score=85.73  Aligned_cols=69  Identities=29%  Similarity=0.385  Sum_probs=47.2

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc--ceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHH
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAI  320 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~--~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L  320 (496)
                      +.++|+||+|||||++++.+++.+.  .+++.+++.+..........  +...+.......+.+|||||++.+
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~   73 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL   73 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence            4689999999999999999999886  78888887765432111101  222222222224579999999887

>PRK06921 hypothetical protein; Provisional

Probab=98.48  E-value=9.8e-08  Score=95.50  Aligned_cols=68  Identities=24%  Similarity=0.358  Sum_probs=45.2

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh----cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHH
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA  319 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~  319 (496)
                      ..+++|+||||+|||+|+.++|+++    +..++.++..++........ ......++..  ....+|+|||++.
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~  188 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK  188 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence            3689999999999999999999987    56677777666544322111 1111222222  2347999999943

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.44  E-value=6.7e-07  Score=78.62  Aligned_cols=72  Identities=24%  Similarity=0.431  Sum_probs=47.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh--------cceeeeeeccccccc--------------cc--CChHHHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISASSVVSK--------------WR--GDSEKLIKVLFELAR  305 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l--------~~~~i~v~~s~l~~~--------------~~--G~~e~~l~~lf~~a~  305 (496)
                      +.++++||||+|||++++.+++.+        ..+++.+++......              ..  .........+.+...
T Consensus         5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~   84 (131)
T PF13401_consen    5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD   84 (131)
T ss_dssp             --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred             cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence            579999999999999999999988        677777776543310              01  122333444445555


Q ss_pred             hcCCcceehhhHHHHH
Q 010975          306 HHAPSTIFLDEIDAII  321 (496)
Q Consensus       306 ~~~p~ILfIDEID~L~  321 (496)
                      .....+|+|||+|.+.
T Consensus        85 ~~~~~~lviDe~~~l~  100 (131)
T PF13401_consen   85 RRRVVLLVIDEADHLF  100 (131)
T ss_dssp             HCTEEEEEEETTHHHH
T ss_pred             hcCCeEEEEeChHhcC
Confidence            5444599999999985

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=98.43  E-value=1.3e-07  Score=94.00  Aligned_cols=68  Identities=28%  Similarity=0.426  Sum_probs=49.5

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccC-----ChHHHHHHHHHHhhhcCCcceehhhHHH
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRG-----DSEKLIKVLFELARHHAPSTIFLDEIDA  319 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G-----~~e~~l~~lf~~a~~~~p~ILfIDEID~  319 (496)
                      ...+++|+||||||||+||-||++++   |.++..++..+++.+...     ..+..+...   ..  +..+|+|||+..
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~---l~--~~dlLIiDDlG~  178 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE---LK--KVDLLIIDDIGY  178 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH---hh--cCCEEEEecccC
Confidence            34789999999999999999999988   788888888888765332     222222221   22  236999999965


Q ss_pred             H
Q 010975          320 I  320 (496)
Q Consensus       320 L  320 (496)
                      .
T Consensus       179 ~  179 (254)
T COG1484         179 E  179 (254)
T ss_pred             c
Confidence            4

>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]

Probab=98.42  E-value=1.9e-07  Score=101.08  Aligned_cols=181  Identities=22%  Similarity=0.274  Sum_probs=114.9

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh--cceeeeeeccccccc---------ccCChH----HHHHHHHHHhhhcCCcceeh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSK---------WRGDSE----KLIKVLFELARHHAPSTIFL  314 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l--~~~~i~v~~s~l~~~---------~~G~~e----~~l~~lf~~a~~~~p~ILfI  314 (496)
                      -.+++.|.|||||-.++|++.+..  ..+|+.++|..+...         ..|.+.    +-.+..++.+..   +.||+
T Consensus       337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~g---GtlFl  413 (606)
T COG3284         337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADG---GTLFL  413 (606)
T ss_pred             CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCC---CccHH
Confidence            479999999999999999999877  568999999654332         223322    222223334433   79999


Q ss_pred             hhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc--c-----ccHHHHHHhhhhhcccCCCHH
Q 010975          315 DEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--E-----LDAAMLRRLEKRILVPLPDTE  387 (496)
Q Consensus       315 DEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~--~-----Ld~aL~rRf~~~I~~~~P~~e  387 (496)
                      |||..|.-..+     ....+.+.+.-+.-+++.. ..-.|.||++|+.+-  .     +-+.|.=|... ..+.+|...
T Consensus       414 deIgd~p~~~Q-----s~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~-~~i~lP~lr  486 (606)
T COG3284         414 DEIGDMPLALQ-----SRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNA-FVITLPPLR  486 (606)
T ss_pred             HHhhhchHHHH-----HHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcC-eeeccCchh
Confidence            99988864422     2223344444444455555 555688999998872  1     23333336644 677788777


Q ss_pred             HHHH---HHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCC
Q 010975          388 ARRA---MFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPD  451 (496)
Q Consensus       388 eR~~---Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~  451 (496)
                      +|..   ++.+++.++.. ...          ..+++.+..+....|.+++|++.+.++.....+++
T Consensus       487 ~R~d~~~~l~~~~~~~~~-~~~----------~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~  542 (606)
T COG3284         487 ERSDRIPLLDRILKREND-WRL----------QLDDDALARLLAYRWPGNIRELDNVIERLAALSDG  542 (606)
T ss_pred             cccccHHHHHHHHHHccC-CCc----------cCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCC
Confidence            7764   55555544332 111          13445667789999999999999888766554433

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=98.42  E-value=4.1e-08  Score=94.21  Aligned_cols=178  Identities=21%  Similarity=0.285  Sum_probs=91.7

Q ss_pred             hcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc---eeeeeec-ccc---------
Q 010975          219 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---TFFNISA-SSV---------  285 (496)
Q Consensus       219 iG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~---~~i~v~~-s~l---------  285 (496)
                      +|.+...+.|.+.+...            +...++|+||+|+|||+|++.+.+....   ..+.+.. ...         
T Consensus         2 ~gR~~el~~l~~~l~~~------------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~   69 (234)
T PF01637_consen    2 FGREKELEKLKELLESG------------PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI   69 (234)
T ss_dssp             -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhh------------cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence            67788888888876431            2367999999999999999999998822   2222211 000         


Q ss_pred             ------------ccc-------------ccCChHHHHHHHHHHhhhcC-CcceehhhHHHHH-hhhcCCcchhHHhhhhh
Q 010975          286 ------------VSK-------------WRGDSEKLIKVLFELARHHA-PSTIFLDEIDAII-SQRGEARSEHEASRRLK  338 (496)
Q Consensus       286 ------------~~~-------------~~G~~e~~l~~lf~~a~~~~-p~ILfIDEID~L~-~~r~~~~~~~~~~~~i~  338 (496)
                                  ...             ........+..+++...... ..||+|||++.+. ...        ....+.
T Consensus        70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~--------~~~~~~  141 (234)
T PF01637_consen   70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE--------EDKDFL  141 (234)
T ss_dssp             HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT--------TTHHHH
T ss_pred             HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc--------chHHHH
Confidence                        000             00112344555666555432 3799999999986 111        012333


Q ss_pred             hhhhhhccCccccCcEEEEEeccCCcc-----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC---CCCCcce
Q 010975          339 TELLIQMDGLTQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE---ESLPYDL  410 (496)
Q Consensus       339 ~~Ll~~ld~~~~~~~~viVIatTn~p~-----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~---~~~~l~~  410 (496)
                      ..+...++.........+|++++....     .-..++..|+.. +.+++.+.++..++++..+... ..   .+.+++.
T Consensus       142 ~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~  219 (234)
T PF01637_consen  142 KSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEE  219 (234)
T ss_dssp             HHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC-------HHHHHH
T ss_pred             HHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHH
Confidence            445555554333444444555554221     112234558877 9999999999999999876554 21   2333444


Q ss_pred             eeecccCC
Q 010975          411 LVERTEGY  418 (496)
Q Consensus       411 la~~t~g~  418 (496)
                      +...+.|.
T Consensus       220 i~~~~gG~  227 (234)
T PF01637_consen  220 IYSLTGGN  227 (234)
T ss_dssp             HHHHHTT-
T ss_pred             HHHHhCCC
Confidence            55555554

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=98.41  E-value=2.5e-07  Score=100.52  Aligned_cols=70  Identities=19%  Similarity=0.155  Sum_probs=55.3

Q ss_pred             hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      ..|++++.+.+.+||.-..+-.++++.++......       ..+.+-+||+||||||||++++.+|++++..+.+-
T Consensus         7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~-------~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew   76 (519)
T PF03215_consen    7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSG-------SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW   76 (519)
T ss_pred             CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhcc-------CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence            56788899999999999988888888887543221       11234688999999999999999999998877653

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=98.41  E-value=1.6e-07  Score=94.30  Aligned_cols=143  Identities=24%  Similarity=0.325  Sum_probs=76.0

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcce---eeeeecccccccccCChHHHHHHHHHHh----h-------hcCCcceeh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSVVSKWRGDSEKLIKVLFELA----R-------HHAPSTIFL  314 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~---~i~v~~s~l~~~~~G~~e~~l~~lf~~a----~-------~~~p~ILfI  314 (496)
                      .+++||+||+|||||++++..-+.+...   ...++++...      +...+..+++..    +       ..+..|+||
T Consensus        33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi  106 (272)
T PF12775_consen   33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI  106 (272)
T ss_dssp             TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred             CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence            4789999999999999999988766332   2233333221      222233222211    1       122359999


Q ss_pred             hhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC--c-cccCcEEEEEeccCCcc---cccHHHHHHhhhhhcccCCCHHH
Q 010975          315 DEIDAIISQRGEARSEHEASRRLKTELLIQMDG--L-TQSDELVFVLAATNLPW---ELDAAMLRRLEKRILVPLPDTEA  388 (496)
Q Consensus       315 DEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~--~-~~~~~~viVIatTn~p~---~Ld~aL~rRf~~~I~~~~P~~ee  388 (496)
                      ||++.-..+.-+.....+..+++.+.- -..|.  . ...-..+.+||+++.+.   .+++++.|.|. ++.++.|+.++
T Consensus       107 DDlN~p~~d~ygtq~~iElLRQ~i~~~-g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~-i~~~~~p~~~s  184 (272)
T PF12775_consen  107 DDLNMPQPDKYGTQPPIELLRQLIDYG-GFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFN-ILNIPYPSDES  184 (272)
T ss_dssp             ETTT-S---TTS--HHHHHHHHHHHCS-EEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEE-EEE----TCCH
T ss_pred             cccCCCCCCCCCCcCHHHHHHHHHHhc-CcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheE-EEEecCCChHH
Confidence            999876655433322222222222110 00110  0 01123467788887542   48888888885 49999999999


Q ss_pred             HHHHHHhhCCC
Q 010975          389 RRAMFESLLPS  399 (496)
Q Consensus       389 R~~Il~~~l~~  399 (496)
                      ...|+..++..
T Consensus       185 l~~If~~il~~  195 (272)
T PF12775_consen  185 LNTIFSSILQS  195 (272)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99988777653

>PRK09183 transposase/IS protein; Provisional

Probab=98.40  E-value=1.2e-07  Score=94.51  Aligned_cols=72  Identities=26%  Similarity=0.355  Sum_probs=48.0

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCC-hHHHHHHHHHHhhhcCCcceehhhHHHH
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD-SEKLIKVLFELARHHAPSTIFLDEIDAI  320 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~-~e~~l~~lf~~a~~~~p~ILfIDEID~L  320 (496)
                      ...+++|+||||||||+|+.+++...   |..+..++..++...+... ....+..++... ...+.+++|||++..
T Consensus       101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~  176 (259)
T PRK09183        101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL  176 (259)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence            34689999999999999999998765   6677777776665432211 111233344332 234579999999764

>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]

Probab=98.35  E-value=5.7e-07  Score=97.51  Aligned_cols=176  Identities=21%  Similarity=0.204  Sum_probs=90.4

Q ss_pred             hhhcchHHHHHHhhhhcccccCcccccc-ccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeee-cccccc--cccCC
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTG-LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS-ASSVVS--KWRGD  292 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~-~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~-~s~l~~--~~~G~  292 (496)
                      +|+|+|++|+-|.-.+.--.. .+.... .....-++||+|.||||||.+.+.+++.+.+-.+.-- ++.-++  .|+-.
T Consensus       430 sIye~edvKkglLLqLfGGt~-k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtr  508 (804)
T KOG0478|consen  430 SIYELEDVKKGLLLQLFGGTR-KEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTK  508 (804)
T ss_pred             hhhcccchhhhHHHHHhcCCc-ccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEe
Confidence            689999999987655533222 111111 1333468999999999999999999998844433211 010000  00000


Q ss_pred             hHHHHHHHHHHhh---hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc----
Q 010975          293 SEKLIKVLFELAR---HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW----  365 (496)
Q Consensus       293 ~e~~l~~lf~~a~---~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~----  365 (496)
                       ....+++.-+..   ....+|-.|||+|+|....+...-+.+..+.+.-+..-.+-.+   +.+.-|+|++|...    
T Consensus       509 -d~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sL---NAR~SVLAaANP~~skyn  584 (804)
T KOG0478|consen  509 -DPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASL---NARCSVLAAANPIRSKYN  584 (804)
T ss_pred             -cCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeec---cccceeeeeeccccccCC
Confidence             000011111110   1223799999999995432221111111111111111111112   22344888888542    


Q ss_pred             ---------cccHHHHHHhhhhhcc-cCCCHHHHHHHHHhhC
Q 010975          366 ---------ELDAAMLRRLEKRILV-PLPDTEARRAMFESLL  397 (496)
Q Consensus       366 ---------~Ld~aL~rRf~~~I~~-~~P~~eeR~~Il~~~l  397 (496)
                               .|++.|++||+.++.+ ..||+..-+.|..++.
T Consensus       585 p~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hiv  626 (804)
T KOG0478|consen  585 PNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIV  626 (804)
T ss_pred             CCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHH
Confidence                     2889999999975443 5566654445555443

>PRK13406 bchD magnesium chelatase subunit D; Provisional

Probab=98.33  E-value=4.4e-07  Score=99.85  Aligned_cols=124  Identities=13%  Similarity=0.060  Sum_probs=84.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc--ceeeeeecccccccccCCh--HHHHH--------HHHHHhhhcCCcceehhhH
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGDS--EKLIK--------VLFELARHHAPSTIFLDEI  317 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~--~~~i~v~~s~l~~~~~G~~--e~~l~--------~lf~~a~~~~p~ILfIDEI  317 (496)
                      .||+|.|++|||||+++++++..+.  .+|+.+..+.-....+|..  +..++        .++..|..   +||||||+
T Consensus        26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~  102 (584)
T PRK13406         26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA  102 (584)
T ss_pred             ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence            6899999999999999999999884  4888777655444444432  12111        12233322   79999999


Q ss_pred             HHHHhhhcCCcchhHHhhhhhhhhhhhccCc---------c-ccCcEEEEEeccCCc---ccccHHHHHHhhhhhcccCC
Q 010975          318 DAIISQRGEARSEHEASRRLKTELLIQMDGL---------T-QSDELVFVLAATNLP---WELDAAMLRRLEKRILVPLP  384 (496)
Q Consensus       318 D~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~---------~-~~~~~viVIatTn~p---~~Ld~aL~rRf~~~I~~~~P  384 (496)
                      ..+.             ..+++.|++.|+.-         . ..+..+++|+|-|..   +.+++++++||...+.++.|
T Consensus       103 n~~~-------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~  169 (584)
T PRK13406        103 ERLE-------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGL  169 (584)
T ss_pred             ccCC-------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCC
Confidence            7763             34556677766532         1 123457778874432   34999999999999999988


Q ss_pred             CHHHH
Q 010975          385 DTEAR  389 (496)
Q Consensus       385 ~~eeR  389 (496)
                      +..+.
T Consensus       170 ~~~~~  174 (584)
T PRK13406        170 ALRDA  174 (584)
T ss_pred             ChHHh
Confidence            76543

>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]

Probab=98.31  E-value=5.7e-07  Score=94.54  Aligned_cols=208  Identities=19%  Similarity=0.202  Sum_probs=115.6

Q ss_pred             hhhcchHHHHHHhhhhcccccCccccccc--cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChH
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSE  294 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~--~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e  294 (496)
                      +|+|.+++|+.|.-.+.-.....  ...+  ++..-+|+|.|.||+.||-|.+.+.+-.-+..+..-.++   ..+|-+.
T Consensus       343 EIyGheDVKKaLLLlLVGgvd~~--~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS---SGVGLTA  417 (721)
T KOG0482|consen  343 EIYGHEDVKKALLLLLVGGVDKS--PGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS---SGVGLTA  417 (721)
T ss_pred             hhccchHHHHHHHHHhhCCCCCC--CCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC---Cccccch
Confidence            69999999999887665432211  1111  334457999999999999999999987755555432211   1222222


Q ss_pred             HHHHHHH-HHh-------hhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc-ccCcEEEEEeccCCcc
Q 010975          295 KLIKVLF-ELA-------RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-QSDELVFVLAATNLPW  365 (496)
Q Consensus       295 ~~l~~lf-~~a-------~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-~~~~~viVIatTn~p~  365 (496)
                      ..++.-. .+.       --...+|-.|||+|++...-.  ..-|++..+..-.+-  -.|+. .-+.+..|+|++|..+
T Consensus       418 AVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DR--tAIHEVMEQQTISIa--KAGI~TtLNAR~sILaAANPay  493 (721)
T KOG0482|consen  418 AVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDR--TAIHEVMEQQTISIA--KAGINTTLNARTSILAAANPAY  493 (721)
T ss_pred             hhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhh--HHHHHHHHhhhhhhh--hhccccchhhhHHhhhhcCccc
Confidence            2222100 000       001236899999999964321  122222221110000  01111 1123456888888664


Q ss_pred             -------------cccHHHHHHhhhhhcc-cCCCHHHHHHHHHhhCCCCCC--CCCCCcc-----------eeeecccCC
Q 010975          366 -------------ELDAAMLRRLEKRILV-PLPDTEARRAMFESLLPSQTG--EESLPYD-----------LLVERTEGY  418 (496)
Q Consensus       366 -------------~Ld~aL~rRf~~~I~~-~~P~~eeR~~Il~~~l~~~~~--~~~~~l~-----------~la~~t~g~  418 (496)
                                   .|+.+|++||+..+.+ ..|+.+.-..+.++..--+..  ....+++           .+++...-+
T Consensus       494 GRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~  573 (721)
T KOG0482|consen  494 GRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPV  573 (721)
T ss_pred             cccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCC
Confidence                         3889999999976655 568888777777776532222  1221111           144555556


Q ss_pred             cCCchhhcchhhhcc
Q 010975          419 SGSDIRLVSKEAAMQ  433 (496)
Q Consensus       419 s~~dI~~l~~~A~~~  433 (496)
                      .+.++...+..|-..
T Consensus       574 vp~~l~dyi~~AYv~  588 (721)
T KOG0482|consen  574 VPEALADYITGAYVE  588 (721)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            667777666555444

>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]

Probab=98.31  E-value=4.2e-07  Score=97.83  Aligned_cols=197  Identities=20%  Similarity=0.170  Sum_probs=111.1

Q ss_pred             cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeee----ccccccccc
Q 010975          215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS----ASSVVSKWR  290 (496)
Q Consensus       215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~----~s~l~~~~~  290 (496)
                      +-.|+|.+.+|.-|.-.+.--......-.-.++..-+|++.|.||+|||-+.++++.-+-+.++.--    .+.|....+
T Consensus       344 ~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVv  423 (764)
T KOG0480|consen  344 FPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVV  423 (764)
T ss_pred             CccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEE
Confidence            4578999999998765443222111110111444568999999999999999999998865544321    111211111


Q ss_pred             CChHHHHHHHHHHhh---hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC---------ccc-cCcEEEE
Q 010975          291 GDSEKLIKVLFELAR---HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG---------LTQ-SDELVFV  357 (496)
Q Consensus       291 G~~e~~l~~lf~~a~---~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~---------~~~-~~~~viV  357 (496)
                      ...+.  ....-+|.   -...+|-.|||+|+|-...+             .++.+.|+.         +.. -+.+.-|
T Consensus       424 kD~es--gdf~iEAGALmLADnGICCIDEFDKMd~~dq-------------vAihEAMEQQtISIaKAGv~aTLnARtSI  488 (764)
T KOG0480|consen  424 KDEES--GDFTIEAGALMLADNGICCIDEFDKMDVKDQ-------------VAIHEAMEQQTISIAKAGVVATLNARTSI  488 (764)
T ss_pred             ecCCC--CceeeecCcEEEccCceEEechhcccChHhH-------------HHHHHHHHhheehheecceEEeecchhhh
Confidence            00000  00000111   01237999999999843211             223333331         110 1123447


Q ss_pred             EeccCCcc-------------cccHHHHHHhhh-hhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCch
Q 010975          358 LAATNLPW-------------ELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDI  423 (496)
Q Consensus       358 IatTn~p~-------------~Ld~aL~rRf~~-~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI  423 (496)
                      +|++|+..             .+++++.+||+. .|.+..|++..-..|.++++..+..-     ++.......|+-.++
T Consensus       489 lAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i-----~~~~~~~~~~~~e~v  563 (764)
T KOG0480|consen  489 LAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGI-----DDATERVCVYTLEQV  563 (764)
T ss_pred             hhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccc-----cccccccccccHHHH
Confidence            88888762             288999999985 45668899988888888887654322     222223345666666


Q ss_pred             hhcchhhh
Q 010975          424 RLVSKEAA  431 (496)
Q Consensus       424 ~~l~~~A~  431 (496)
                      +.+++.|.
T Consensus       564 rkYi~yAR  571 (764)
T KOG0480|consen  564 RKYIRYAR  571 (764)
T ss_pred             HHHHHHHH
Confidence            66665443

>PF05729 NACHT: NACHT domain

Probab=98.28  E-value=3e-06  Score=77.03  Aligned_cols=140  Identities=18%  Similarity=0.219  Sum_probs=72.3

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcc--------e-eeeeecccccccc------------cCChHHHHHH-HHHHhhhcC
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKT--------T-FFNISASSVVSKW------------RGDSEKLIKV-LFELARHHA  308 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~--------~-~i~v~~s~l~~~~------------~G~~e~~l~~-lf~~a~~~~  308 (496)
                      -++|+|+||+|||++++.++..+..        . .+.+.+.+....-            .......... +........
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK   81 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence            4789999999999999999987711        1 2233332222110            0001111111 112223344


Q ss_pred             CcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhh--hhcccCCCH
Q 010975          309 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEK--RILVPLPDT  386 (496)
Q Consensus       309 p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~--~I~~~~P~~  386 (496)
                      ..+|+||.+|.+......     .........+...+.......-.  ++.|++.. .... +.+++..  .+.+...+.
T Consensus        82 ~~llilDglDE~~~~~~~-----~~~~~~~~~l~~l~~~~~~~~~~--liit~r~~-~~~~-~~~~~~~~~~~~l~~~~~  152 (166)
T PF05729_consen   82 RVLLILDGLDELEEQDQS-----QERQRLLDLLSQLLPQALPPGVK--LIITSRPR-AFPD-LRRRLKQAQILELEPFSE  152 (166)
T ss_pred             ceEEEEechHhcccchhh-----hHHHHHHHHHHHHhhhccCCCCe--EEEEEcCC-hHHH-HHHhcCCCcEEEECCCCH
Confidence            578999999999654221     01112222232333321122222  33343322 2221 4444433  378888899


Q ss_pred             HHHHHHHHhhCCC
Q 010975          387 EARRAMFESLLPS  399 (496)
Q Consensus       387 eeR~~Il~~~l~~  399 (496)
                      ++..++++.+++.
T Consensus       153 ~~~~~~~~~~f~~  165 (166)
T PF05729_consen  153 EDIKQYLRKYFSN  165 (166)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999988754

>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite

Probab=98.25  E-value=7.4e-08  Score=99.34  Aligned_cols=168  Identities=25%  Similarity=0.303  Sum_probs=85.0

Q ss_pred             hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeec-----ccccccccC
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA-----SSVVSKWRG  291 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~-----s~l~~~~~G  291 (496)
                      .|+|.+.+|..|.-.+.........-....+..-|+||.|.||||||.|.+.+++.....++ +++     ..+.....-
T Consensus        25 ~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~-~~g~~~s~~gLta~~~~  103 (331)
T PF00493_consen   25 SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVY-TSGKGSSAAGLTASVSR  103 (331)
T ss_dssp             TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEE-EECCGSTCCCCCEEECC
T ss_pred             cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEE-ECCCCcccCCccceecc
Confidence            58999999998776554433221111111334458999999999999999998876644443 221     122111100


Q ss_pred             ---ChHHHHH-HHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC---------cc-ccCcEEEE
Q 010975          292 ---DSEKLIK-VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG---------LT-QSDELVFV  357 (496)
Q Consensus       292 ---~~e~~l~-~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~---------~~-~~~~~viV  357 (496)
                         ..+..+. ..+-.|..   +|++|||+|.+....             ...|++.|+.         +. .-+.+.-|
T Consensus       104 d~~~~~~~leaGalvlad~---GiccIDe~dk~~~~~-------------~~~l~eaMEqq~isi~kagi~~~l~ar~sv  167 (331)
T PF00493_consen  104 DPVTGEWVLEAGALVLADG---GICCIDEFDKMKEDD-------------RDALHEAMEQQTISIAKAGIVTTLNARCSV  167 (331)
T ss_dssp             CGGTSSECEEE-HHHHCTT---SEEEECTTTT--CHH-------------HHHHHHHHHCSCEEECTSSSEEEEE---EE
T ss_pred             ccccceeEEeCCchhcccC---ceeeecccccccchH-------------HHHHHHHHHcCeeccchhhhcccccchhhh
Confidence               0000011 12222333   899999999985421             1334444431         11 11234668


Q ss_pred             EeccCCcc-------------cccHHHHHHhhhhhcc-cCCCHHHHHHHHHhhCCCCC
Q 010975          358 LAATNLPW-------------ELDAAMLRRLEKRILV-PLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       358 IatTn~p~-------------~Ld~aL~rRf~~~I~~-~~P~~eeR~~Il~~~l~~~~  401 (496)
                      +|++|...             .++++|++||+.++.+ ..|+.+.-..+.++.+....
T Consensus       168 laa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~  225 (331)
T PF00493_consen  168 LAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHR  225 (331)
T ss_dssp             EEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT-
T ss_pred             HHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEeccc
Confidence            88988664             3778999999987655 66776666677777765543

; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.

>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]

Probab=98.21  E-value=2.2e-06  Score=86.57  Aligned_cols=162  Identities=19%  Similarity=0.260  Sum_probs=101.8

Q ss_pred             chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHh---hhcceeeeeeccccc------
Q 010975          216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT---ECKTTFFNISASSVV------  286 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~---~l~~~~i~v~~s~l~------  286 (496)
                      ..+.|..+..+.+.+++..-....        ..++|++.||.|+|||++......   +.|-+++.+......      
T Consensus        24 ~~l~g~~~~~~~l~~~lkqt~~~g--------EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a   95 (408)
T KOG2228|consen   24 INLFGVQDEQKHLSELLKQTILHG--------ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA   95 (408)
T ss_pred             cceeehHHHHHHHHHHHHHHHHhc--------CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence            357888887777877775544333        347899999999999987655533   556666655432211      


Q ss_pred             ---------------ccccCChHHHHHHHHHHhhh-----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc
Q 010975          287 ---------------SKWRGDSEKLIKVLFELARH-----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD  346 (496)
Q Consensus       287 ---------------~~~~G~~e~~l~~lf~~a~~-----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld  346 (496)
                                     .+..|.+...+..++...+.     ..+.|.++||+|..++...          +  ..+++.+|
T Consensus        96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~r----------Q--tllYnlfD  163 (408)
T KOG2228|consen   96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSR----------Q--TLLYNLFD  163 (408)
T ss_pred             HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchh----------h--HHHHHHHH
Confidence                           12334555555555544432     1223455589998865421          1  22445555


Q ss_pred             CccccCcEEEEEeccCCc---ccccHHHHHHhhhh-hcccC-CCHHHHHHHHHhhC
Q 010975          347 GLTQSDELVFVLAATNLP---WELDAAMLRRLEKR-ILVPL-PDTEARRAMFESLL  397 (496)
Q Consensus       347 ~~~~~~~~viVIatTn~p---~~Ld~aL~rRf~~~-I~~~~-P~~eeR~~Il~~~l  397 (496)
                      -......+++||+.|.+.   +.+...+.+||... |.+++ ...++-..+++..+
T Consensus       164 isqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll  219 (408)
T KOG2228|consen  164 ISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL  219 (408)
T ss_pred             HHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence            444445567788777666   45778899999766 55443 37888888988887

>PRK05917 DNA polymerase III subunit delta'; Validated

Probab=98.20  E-value=2.3e-06  Score=86.20  Aligned_cols=119  Identities=13%  Similarity=0.130  Sum_probs=78.0

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceeeeeec--------ccc---cccccC--ChHHHHHHHHHHhhh----cCCcc
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISA--------SSV---VSKWRG--DSEKLIKVLFELARH----HAPST  311 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~--------s~l---~~~~~G--~~e~~l~~lf~~a~~----~~p~I  311 (496)
                      ++.+||+||+|+||+.+|.++|+.+-+.--.-.|        .++   .....+  -.-..++.+.+.+..    ....|
T Consensus        19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv   98 (290)
T PRK05917         19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYKI   98 (290)
T ss_pred             CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCceE
Confidence            4679999999999999999999988432000001        111   101000  123345555554432    23359


Q ss_pred             eehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCC
Q 010975          312 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP  384 (496)
Q Consensus       312 LfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P  384 (496)
                      ++||++|.|...             ..+.||+.++   .++..+++|..|+.++.+.+.++||+.. +.|+.+
T Consensus        99 ~ii~~ad~mt~~-------------AaNaLLK~LE---EPp~~~~fiL~~~~~~~ll~TI~SRcq~-~~~~~~  154 (290)
T PRK05917         99 YIIHEADRMTLD-------------AISAFLKVLE---DPPQHGVIILTSAKPQRLPPTIRSRSLS-IHIPME  154 (290)
T ss_pred             EEEechhhcCHH-------------HHHHHHHHhh---cCCCCeEEEEEeCChhhCcHHHHhcceE-EEccch
Confidence            999999998532             3477888887   3455577778888899999999999966 777654

>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=98.19  E-value=4.2e-06  Score=83.31  Aligned_cols=95  Identities=17%  Similarity=0.099  Sum_probs=59.7

Q ss_pred             cccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCC-cceeeecccCCcCCchhhcchhhhccHHHHHHHHh
Q 010975          364 PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL  442 (496)
Q Consensus       364 p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~-l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~l  442 (496)
                      |..++-.+++|+ .+|...+++.++.+.||+..+.+.....+.+ ++.+......-+-+.--.|+..|.+.+.+|.    
T Consensus       339 phGiP~D~lDR~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk----  413 (454)
T KOG2680|consen  339 PHGIPIDLLDRM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRK----  413 (454)
T ss_pred             CCCCcHHHhhhh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc----
Confidence            356899999999 5588888999999999999987766553332 2323333332222222334455555555541    


Q ss_pred             hccccCCCCCCCCCCCCCCchhHHHHhhcCCCCcc
Q 010975          443 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH  477 (496)
Q Consensus       443 e~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~  477 (496)
                                    ...++.+|++++-+.+--...
T Consensus       414 --------------~~~v~~~di~r~y~LFlD~~R  434 (454)
T KOG2680|consen  414 --------------GKVVEVDDIERVYRLFLDEKR  434 (454)
T ss_pred             --------------CceeehhHHHHHHHHHhhhhh
Confidence                          123778899988877654433

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=98.19  E-value=2.1e-06  Score=88.30  Aligned_cols=81  Identities=33%  Similarity=0.383  Sum_probs=55.3

Q ss_pred             cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc--ceeeeeecccccccccCC
Q 010975          215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGD  292 (496)
Q Consensus       215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~--~~~i~v~~s~l~~~~~G~  292 (496)
                      -+.++|+.++++..--++.+-.. .      --..+++||.||||||||.||-++|+++|  .||+.++++++.+.....
T Consensus        23 ~~GlVGQ~~AReAagiiv~mIk~-~------K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kK   95 (398)
T PF06068_consen   23 ADGLVGQEKAREAAGIIVDMIKE-G------KIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKK   95 (398)
T ss_dssp             ETTEES-HHHHHHHHHHHHHHHT-T--------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-H
T ss_pred             cccccChHHHHHHHHHHHHHHhc-c------cccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCc
Confidence            46799999999987655543221 1      12347899999999999999999999996  899999999998765544


Q ss_pred             hHHHHHHHHHH
Q 010975          293 SEKLIKVLFEL  303 (496)
Q Consensus       293 ~e~~l~~lf~~  303 (496)
                      ++ .+.+.|++
T Consensus        96 TE-~L~qa~Rr  105 (398)
T PF06068_consen   96 TE-ALTQAFRR  105 (398)
T ss_dssp             HH-HHHHHHHC
T ss_pred             hH-HHHHHHHH
Confidence            44 34444543

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

Probab=98.14  E-value=7.9e-07  Score=98.40  Aligned_cols=169  Identities=25%  Similarity=0.288  Sum_probs=96.1

Q ss_pred             chhhcchHHHHHHhhhhcccccCcccccc--ccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeee-cc---cccccc
Q 010975          216 ESIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS-AS---SVVSKW  289 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~--~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~-~s---~l~~~~  289 (496)
                      -.+.|.+.+|+.|.-.+.....  +....  .++..-|+||.|.||||||.|.+.+++.+-+.++.-- ++   .|....
T Consensus       286 PsIyG~e~VKkAilLqLfgGv~--k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav  363 (682)
T COG1241         286 PSIYGHEDVKKAILLQLFGGVK--KNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAV  363 (682)
T ss_pred             ccccCcHHHHHHHHHHhcCCCc--ccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEE
Confidence            3699999999987755533221  11111  1334468999999999999999999998855443221 11   111111


Q ss_pred             cCChHHHHHHHHHHhh---hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc---------Ccc-ccCcEEE
Q 010975          290 RGDSEKLIKVLFELAR---HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD---------GLT-QSDELVF  356 (496)
Q Consensus       290 ~G~~e~~l~~lf~~a~---~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld---------~~~-~~~~~vi  356 (496)
                      .....  ...+.-++.   ...++|.+|||+|++...-             ...+...|+         |+. .-+.+.-
T Consensus       364 ~rd~~--tge~~LeaGALVlAD~Gv~cIDEfdKm~~~d-------------r~aihEaMEQQtIsIaKAGI~atLnARcs  428 (682)
T COG1241         364 VRDKV--TGEWVLEAGALVLADGGVCCIDEFDKMNEED-------------RVAIHEAMEQQTISIAKAGITATLNARCS  428 (682)
T ss_pred             EEccC--CCeEEEeCCEEEEecCCEEEEEeccCCChHH-------------HHHHHHHHHhcEeeecccceeeecchhhh
Confidence            00000  000110111   1235899999999873221             122333332         111 1123455


Q ss_pred             EEeccCCcc-------------cccHHHHHHhhhhhcc-cCCCHHHHHHHHHhhCCCCC
Q 010975          357 VLAATNLPW-------------ELDAAMLRRLEKRILV-PLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       357 VIatTn~p~-------------~Ld~aL~rRf~~~I~~-~~P~~eeR~~Il~~~l~~~~  401 (496)
                      |+|++|...             .++++|++||+.++.+ ..|+.+.-..+.++.+..+.
T Consensus       429 vLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~  487 (682)
T COG1241         429 VLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHR  487 (682)
T ss_pred             hhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHh
Confidence            788888774             2889999999976555 45777666667776665443

>PRK08939 primosomal protein DnaI; Reviewed

Probab=98.13  E-value=1.8e-06  Score=88.07  Aligned_cols=69  Identities=23%  Similarity=0.390  Sum_probs=47.3

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCCh-HHHHHHHHHHhhhcCCcceehhhHHH
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDA  319 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~~-e~~l~~lf~~a~~~~p~ILfIDEID~  319 (496)
                      .+|++|+||+|||||+|+.++|+++   |.++..+...++........ .......++...  ...+|+|||+..
T Consensus       156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~  228 (306)
T PRK08939        156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGA  228 (306)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCC
Confidence            4799999999999999999999998   67777777766654432111 011223333333  346999999954

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=98.13  E-value=1e-05  Score=86.31  Aligned_cols=72  Identities=19%  Similarity=0.158  Sum_probs=52.9

Q ss_pred             hhhhhCCCCCccchhhcchHHHHHHhhhhcccc-cCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPI-KYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~-~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      ..|.+++.+.+.++|.-..+-+.++++++.... ..+.      ...+-+||+||+||||||.++.+++++|..+++-.
T Consensus        70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~------l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~  142 (634)
T KOG1970|consen   70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPK------LGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS  142 (634)
T ss_pred             chhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccC------CCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence            457788888889998887777777777665110 0111      12245899999999999999999999998887544

>PRK05818 DNA polymerase III subunit delta'; Validated

Probab=98.11  E-value=7.3e-06  Score=81.18  Aligned_cols=121  Identities=11%  Similarity=0.022  Sum_probs=78.1

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhhcceeeeeec--------------cccccccc---CChHHHHHHHHHHhhh---
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA--------------SSVVSKWR---GDSEKLIKVLFELARH---  306 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~--------------s~l~~~~~---G~~e~~l~~lf~~a~~---  306 (496)
                      .++..+||+||+|+||..+|.++|+.+-+.--.-.|              .++.--+.   .-....++.+.+....   
T Consensus         5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~   84 (261)
T PRK05818          5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV   84 (261)
T ss_pred             CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence            345789999999999999999999977221000001              11110000   1122334444443321   


Q ss_pred             --cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCC
Q 010975          307 --HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP  384 (496)
Q Consensus       307 --~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P  384 (496)
                        ....|++||++|.|..             ...+.||+.++   .++..+++|.+|+.++.+.+.++||+.. +.++.+
T Consensus        85 e~~~~KV~II~~ae~m~~-------------~AaNaLLK~LE---EPp~~t~fiLit~~~~~lLpTI~SRCq~-~~~~~~  147 (261)
T PRK05818         85 ESNGKKIYIIYGIEKLNK-------------QSANSLLKLIE---EPPKNTYGIFTTRNENNILNTILSRCVQ-YVVLSK  147 (261)
T ss_pred             hcCCCEEEEeccHhhhCH-------------HHHHHHHHhhc---CCCCCeEEEEEECChHhCchHhhhheee-eecCCh
Confidence              2346999999999843             23477888887   4555677888899999999999999966 666665

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.03  E-value=1.3e-05  Score=72.20  Aligned_cols=72  Identities=25%  Similarity=0.397  Sum_probs=47.0

Q ss_pred             eeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc----------------------cc--CChHHHHHHHHHHh
Q 010975          252 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------------WR--GDSEKLIKVLFELA  304 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~----------------------~~--G~~e~~l~~lf~~a  304 (496)
                      ++|+||||+|||+++..++...   +.+++.++.......                      ..  .............+
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR   81 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence            6899999999999999999887   456666654322210                      00  11111122234445


Q ss_pred             hhcCCcceehhhHHHHHhh
Q 010975          305 RHHAPSTIFLDEIDAIISQ  323 (496)
Q Consensus       305 ~~~~p~ILfIDEID~L~~~  323 (496)
                      ....|.+++|||+..+...
T Consensus        82 ~~~~~~~lviDe~~~~~~~  100 (165)
T cd01120          82 ERGGDDLIILDELTRLVRA  100 (165)
T ss_pred             hCCCCEEEEEEcHHHHHHH
Confidence            5667889999999998754

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK07276 DNA polymerase III subunit delta'; Validated

Probab=98.01  E-value=1.8e-05  Score=80.04  Aligned_cols=143  Identities=12%  Similarity=0.097  Sum_probs=87.9

Q ss_pred             chHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceee--eeec--------------cc
Q 010975          221 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF--NISA--------------SS  284 (496)
Q Consensus       221 ~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i--~v~~--------------s~  284 (496)
                      +..+++.+...+...           ..+..+||+||  +||+++|+.+|+.+.+.--  .-.|              .+
T Consensus         7 q~~~~~~L~~~~~~~-----------rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD   73 (290)
T PRK07276          7 QPKVFQRFQTILEQD-----------RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSD   73 (290)
T ss_pred             HHHHHHHHHHHHHcC-----------CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence            345566666655432           23467999996  6899999999997732100  0000              11


Q ss_pred             ccccc-cCC--hHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEE
Q 010975          285 VVSKW-RGD--SEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV  357 (496)
Q Consensus       285 l~~~~-~G~--~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV  357 (496)
                      +.--. .|.  .-..++.+...+..    ....|++||++|.|...             ..+.||+.++   .++..+++
T Consensus        74 ~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~-------------AaNaLLKtLE---EPp~~t~~  137 (290)
T PRK07276         74 VTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVN-------------AANSLLKVIE---EPQSEIYI  137 (290)
T ss_pred             eeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHH-------------HHHHHHHHhc---CCCCCeEE
Confidence            10000 011  23455555554432    23359999999998432             3477888887   34455667


Q ss_pred             EeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHH
Q 010975          358 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFE  394 (496)
Q Consensus       358 IatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~  394 (496)
                      |.+|+.++.+-+.++||+.. +.|+. +.++..+++.
T Consensus       138 iL~t~~~~~lLpTI~SRcq~-i~f~~-~~~~~~~~L~  172 (290)
T PRK07276        138 FLLTNDENKVLPTIKSRTQI-FHFPK-NEAYLIQLLE  172 (290)
T ss_pred             EEEECChhhCchHHHHccee-eeCCC-cHHHHHHHHH
Confidence            77888899999999999966 88865 5555555554

>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A

Probab=97.98  E-value=7.5e-06  Score=80.26  Aligned_cols=132  Identities=16%  Similarity=0.182  Sum_probs=71.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS  329 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~  329 (496)
                      .+-.++||+|||||.+++.+|+.+|..++.++|++..+      ...+.+++.-+.... +.+++||++.+....-..  
T Consensus        33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~G-aW~cfdefnrl~~~vLS~--  103 (231)
T PF12774_consen   33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQSG-AWLCFDEFNRLSEEVLSV--  103 (231)
T ss_dssp             TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHHT--EEEEETCCCSSHHHHHH--
T ss_pred             CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhcC-chhhhhhhhhhhHHHHHH--
Confidence            46778999999999999999999999999999988643      355666666555544 799999998873321000  


Q ss_pred             hhHHhhhhhhhhhhhcc-----C--ccccCcEEEEEeccCCc----ccccHHHHHHhhhhhcccCCCHHHHHHH
Q 010975          330 EHEASRRLKTELLIQMD-----G--LTQSDELVFVLAATNLP----WELDAAMLRRLEKRILVPLPDTEARRAM  392 (496)
Q Consensus       330 ~~~~~~~i~~~Ll~~ld-----~--~~~~~~~viVIatTn~p----~~Ld~aL~rRf~~~I~~~~P~~eeR~~I  392 (496)
                      -.+..+.+...+...-.     +  +.-.. ..-+..|.|..    ..+++.++.-| +.+.+..||.+.-.++
T Consensus       104 i~~~i~~i~~al~~~~~~~~~~g~~i~l~~-~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei  175 (231)
T PF12774_consen  104 ISQQIQSIQDALRAKQKSFTLEGQEIKLNP-NCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEI  175 (231)
T ss_dssp             HHHHHHHHHHHHHCTSSEEEETTCEEE--T-T-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHH
T ss_pred             HHHHHHHHHHhhcccccccccCCCEEEEcc-ceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHH
Confidence            00001111111111100     0  00111 12344455643    46888888777 5588889996655554

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=97.98  E-value=4.5e-06  Score=71.82  Aligned_cols=26  Identities=42%  Similarity=0.814  Sum_probs=22.4

Q ss_pred             eeeeCCCCChhHHHHHHHHhhhccee
Q 010975          252 ILLFGPPGTGKTMLAKAVATECKTTF  277 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l~~~~  277 (496)
                      |.|+||||+|||++|+.++..+...+
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~~~~   26 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLLKHI   26 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            57999999999999999999885433

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.96  E-value=6.7e-06  Score=79.90  Aligned_cols=111  Identities=21%  Similarity=0.264  Sum_probs=58.4

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc--cc--------ccccCChHHHHHHHHHHhh--hcCCcceehhh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS--VV--------SKWRGDSEKLIKVLFELAR--HHAPSTIFLDE  316 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~--l~--------~~~~G~~e~~l~~lf~~a~--~~~p~ILfIDE  316 (496)
                      +..+||||+||+|||++|+.++..  .-++..+.+.  +.        .......-..+...+..+.  ...+.+|+||.
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs   89 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN   89 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence            356999999999999999999742  2222222211  00        0001112223333333332  23467999999


Q ss_pred             HHHHHh------hhcCCc--chhHHhhhhhhhhhhhccCccccCcEEEEEecc
Q 010975          317 IDAIIS------QRGEAR--SEHEASRRLKTELLIQMDGLTQSDELVFVLAAT  361 (496)
Q Consensus       317 ID~L~~------~r~~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatT  361 (496)
                      ++.+..      .+....  .+......+...++..+..+...+.+|++++-.
T Consensus        90 I~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~~g~nII~tAhe  142 (220)
T TIGR01618        90 ISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKESNKNIYATAWE  142 (220)
T ss_pred             HHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEEee
Confidence            999865      221111  111222334455666665555556666666544

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=97.95  E-value=2.9e-05  Score=78.94  Aligned_cols=124  Identities=13%  Similarity=0.049  Sum_probs=83.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcce-------------eeeeecccccccccCChHHHHHHHHHHhhh-----cCCcc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTT-------------FFNISASSVVSKWRGDSEKLIKVLFELARH-----HAPST  311 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~-------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~-----~~p~I  311 (496)
                      +.+||+|+.|.||+.+|+.+++.+.+.             +..++..   +..  -.-..++.+.+....     ....|
T Consensus        19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~--i~vd~Ir~l~~~~~~~~~~~~~~Kv   93 (299)
T PRK07132         19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKD--LSKSEFLSAINKLYFSSFVQSQKKI   93 (299)
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCc--CCHHHHHHHHHHhccCCcccCCceE
Confidence            568899999999999999999987221             1112100   010  112345555554432     24469


Q ss_pred             eehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHH
Q 010975          312 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRA  391 (496)
Q Consensus       312 LfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~  391 (496)
                      ++||++|.+..             ...+.|+..++.   .+..+++|.+|+.++.+-+++++|+.. +.+.+++.++...
T Consensus        94 vII~~~e~m~~-------------~a~NaLLK~LEE---Pp~~t~~il~~~~~~kll~TI~SRc~~-~~f~~l~~~~l~~  156 (299)
T PRK07132         94 LIIKNIEKTSN-------------SLLNALLKTIEE---PPKDTYFLLTTKNINKVLPTIVSRCQV-FNVKEPDQQKILA  156 (299)
T ss_pred             EEEecccccCH-------------HHHHHHHHHhhC---CCCCeEEEEEeCChHhChHHHHhCeEE-EECCCCCHHHHHH
Confidence            99999987732             234678888873   444456666677888899999999966 9999999888877


Q ss_pred             HHHh
Q 010975          392 MFES  395 (496)
Q Consensus       392 Il~~  395 (496)
                      .+..
T Consensus       157 ~l~~  160 (299)
T PRK07132        157 KLLS  160 (299)
T ss_pred             HHHH
Confidence            6654

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=97.93  E-value=1.1e-05  Score=80.72  Aligned_cols=166  Identities=22%  Similarity=0.139  Sum_probs=82.9

Q ss_pred             hHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhh--hcce---eeeeecccccc---------
Q 010975          222 ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE--CKTT---FFNISASSVVS---------  287 (496)
Q Consensus       222 e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~--l~~~---~i~v~~s~l~~---------  287 (496)
                      |..+++|.+.+....          ...+.+.|+|++|+|||+||+.+++.  ....   ++.++.+.-..         
T Consensus         2 e~~~~~l~~~L~~~~----------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~   71 (287)
T PF00931_consen    2 EKEIEKLKDWLLDNS----------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQIL   71 (287)
T ss_dssp             HHHHHHHHHHHHTTT----------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCC----------CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccc
Confidence            445566666554321          12357999999999999999999988  3222   23333322110         


Q ss_pred             -----c-----ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEE
Q 010975          288 -----K-----WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV  357 (496)
Q Consensus       288 -----~-----~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV  357 (496)
                           .     .....+.....+.+... ..+++|+||+++...               ....+...+.   .......|
T Consensus        72 ~~l~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~---------------~~~~l~~~~~---~~~~~~ki  132 (287)
T PF00931_consen   72 RQLGEPDSSISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEE---------------DLEELREPLP---SFSSGSKI  132 (287)
T ss_dssp             HHHTCC-STSSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHH---------------HH-------H---CHHSS-EE
T ss_pred             ccccccccccccccccccccccchhhhc-cccceeeeeeecccc---------------cccccccccc---cccccccc
Confidence                 0     01122333333433333 347899999986542               1111221111   11112335


Q ss_pred             EeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC----CCCCcceeeecccCC
Q 010975          358 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE----ESLPYDLLVERTEGY  418 (496)
Q Consensus       358 IatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~----~~~~l~~la~~t~g~  418 (496)
                      |.||....... ..... ...+.++..+.++-.+++..........    .......+++.+.|.
T Consensus       133 lvTTR~~~v~~-~~~~~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl  195 (287)
T PF00931_consen  133 LVTTRDRSVAG-SLGGT-DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL  195 (287)
T ss_dssp             EEEESCGGGGT-THHSC-EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-
T ss_pred             ccccccccccc-ccccc-ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            55776653221 11111 3558888899999999999887554411    111233456666654

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=97.91  E-value=1.8e-05  Score=92.39  Aligned_cols=146  Identities=22%  Similarity=0.215  Sum_probs=89.5

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc------ccc-c----CChHHHHHHHHHHhhhcCCcceehhhH
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV------SKW-R----GDSEKLIKVLFELARHHAPSTIFLDEI  317 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~------~~~-~----G~~e~~l~~lf~~a~~~~p~ILfIDEI  317 (496)
                      .+++||.|.||+|||+|+.++|+..|..+++++.++-.      +.+ .    |+..-.-.-++...+.  ..-+++||+
T Consensus      1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~--G~WVlLDEi 1620 (4600)
T COG5271        1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD--GGWVLLDEI 1620 (4600)
T ss_pred             CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc--CCEEEeehh
Confidence            36799999999999999999999999999999986532      222 1    2111111112222222  368999999


Q ss_pred             HHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc------cccHHHHHHhhhhhcccCCCHHHHHH
Q 010975          318 DAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW------ELDAAMLRRLEKRILVPLPDTEARRA  391 (496)
Q Consensus       318 D~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~------~Ld~aL~rRf~~~I~~~~P~~eeR~~  391 (496)
                      .......-++....-  ..-..+.+-.+|-.-.-..+..|.||-|..+      .++..+..||.+ +.+...+.++...
T Consensus      1621 NLaSQSVlEGLNacL--DhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsv-V~~d~lt~dDi~~ 1697 (4600)
T COG5271        1621 NLASQSVLEGLNACL--DHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSV-VKMDGLTTDDITH 1697 (4600)
T ss_pred             hhhHHHHHHHHHHHH--hhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhhe-EEecccccchHHH
Confidence            764322111100000  0000122222332222234466777766554      499999999966 9999999999999


Q ss_pred             HHHhhCCC
Q 010975          392 MFESLLPS  399 (496)
Q Consensus       392 Il~~~l~~  399 (496)
                      |+......
T Consensus      1698 Ia~~~yp~ 1705 (4600)
T COG5271        1698 IANKMYPQ 1705 (4600)
T ss_pred             HHHhhCCc
Confidence            88887653

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=97.91  E-value=8.3e-06  Score=85.06  Aligned_cols=101  Identities=21%  Similarity=0.310  Sum_probs=55.4

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhhcc-eeeeeeccccccc-------ccCChHHHHHHHHHHhhhcCCcceehhhHH
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATECKT-TFFNISASSVVSK-------WRGDSEKLIKVLFELARHHAPSTIFLDEID  318 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l~~-~~i~v~~s~l~~~-------~~G~~e~~l~~lf~~a~~~~p~ILfIDEID  318 (496)
                      .+++|++||||+|+|||+|.-.+.+.+.. .-.++.-.+++..       +.|. ..-+..+.+..... ..+|++||++
T Consensus        60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~-~~~l~~va~~l~~~-~~lLcfDEF~  137 (362)
T PF03969_consen   60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQ-DDPLPQVADELAKE-SRLLCFDEFQ  137 (362)
T ss_pred             CCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCC-CccHHHHHHHHHhc-CCEEEEeeee
Confidence            46799999999999999999999887743 1111111111111       1111 11122222222222 2499999996


Q ss_pred             HHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc
Q 010975          319 AIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP  364 (496)
Q Consensus       319 ~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p  364 (496)
                      .-      +.++.+    ++..|+..+-     ...+++|+|+|.+
T Consensus       138 V~------DiaDAm----il~rLf~~l~-----~~gvvlVaTSN~~  168 (362)
T PF03969_consen  138 VT------DIADAM----ILKRLFEALF-----KRGVVLVATSNRP  168 (362)
T ss_pred             cc------chhHHH----HHHHHHHHHH-----HCCCEEEecCCCC
Confidence            42      122333    3333444331     2337789999987

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>PHA00729 NTP-binding motif containing protein

Probab=97.89  E-value=1.8e-05  Score=76.99  Aligned_cols=27  Identities=33%  Similarity=0.453  Sum_probs=24.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcce
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTT  276 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~  276 (496)
                      .+++|+|+||||||++|.+++.+++..
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~l~~~   44 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARDVFWK   44 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            479999999999999999999988633

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.88  E-value=2.7e-05  Score=71.35  Aligned_cols=24  Identities=38%  Similarity=0.589  Sum_probs=22.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ..+.++|+||+||||++.-++..+
T Consensus         6 mki~ITG~PGvGKtTl~~ki~e~L   29 (179)
T COG1618           6 MKIFITGRPGVGKTTLVLKIAEKL   29 (179)
T ss_pred             eEEEEeCCCCccHHHHHHHHHHHH
Confidence            468999999999999999999877

>PLN03210 Resistant to P

Probab=97.86  E-value=4.2e-05  Score=91.28  Aligned_cols=57  Identities=19%  Similarity=0.371  Sum_probs=44.4

Q ss_pred             CCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce
Q 010975          210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT  276 (496)
Q Consensus       210 ~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~  276 (496)
                      .+...+++++|++...+++.+.+....          ...+-+-|+|++|+||||||+++++.+..+
T Consensus       178 ~~~~~~~~~vG~~~~l~~l~~lL~l~~----------~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~  234 (1153)
T PLN03210        178 TPSNDFEDFVGIEDHIAKMSSLLHLES----------EEVRMVGIWGSSGIGKTTIARALFSRLSRQ  234 (1153)
T ss_pred             ccCcccccccchHHHHHHHHHHHcccc----------CceEEEEEEcCCCCchHHHHHHHHHHHhhc
Confidence            355668899999999999988774321          123568899999999999999998877443

syringae 6; Provisional

>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]

Probab=97.85  E-value=1.4e-05  Score=86.14  Aligned_cols=157  Identities=23%  Similarity=0.248  Sum_probs=87.0

Q ss_pred             hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc----ccccccCC
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS----VVSKWRGD  292 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~----l~~~~~G~  292 (496)
                      .|+|.+.+|..+.-.+........-....++...+|||+|.||||||-+.|.+++...+.++..--+.    +.......
T Consensus       450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~Kd  529 (854)
T KOG0477|consen  450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKD  529 (854)
T ss_pred             hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeC
Confidence            58999999999887664433221111122444467999999999999999999998876665442211    11000000


Q ss_pred             hHHHHHHHHHHhhh---cCCcceehhhHHHHHhhhcCCcchhHHhhhh-----hhhhhhhccCccccCcEEEEEeccCCc
Q 010975          293 SEKLIKVLFELARH---HAPSTIFLDEIDAIISQRGEARSEHEASRRL-----KTELLIQMDGLTQSDELVFVLAATNLP  364 (496)
Q Consensus       293 ~e~~l~~lf~~a~~---~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i-----~~~Ll~~ld~~~~~~~~viVIatTn~p  364 (496)
                        ...+.+.-++..   ...+|-+|||+|++...-.  ..-|++..+.     +..+...+      ..+..|||++|..
T Consensus       530 --PvtrEWTLEaGALVLADkGvClIDEFDKMndqDR--tSIHEAMEQQSISISKAGIVtsL------qArctvIAAanPi  599 (854)
T KOG0477|consen  530 --PVTREWTLEAGALVLADKGVCLIDEFDKMNDQDR--TSIHEAMEQQSISISKAGIVTSL------QARCTVIAAANPI  599 (854)
T ss_pred             --CccceeeeccCeEEEccCceEEeehhhhhccccc--chHHHHHHhcchhhhhhhHHHHH------HhhhhhheecCCC
Confidence              001111111110   1237999999999954321  1223222111     01122222      2335688888873


Q ss_pred             ---c----------cccHHHHHHhhhhhcccC
Q 010975          365 ---W----------ELDAAMLRRLEKRILVPL  383 (496)
Q Consensus       365 ---~----------~Ld~aL~rRf~~~I~~~~  383 (496)
                         +          .+..++++||+....+..
T Consensus       600 gGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD  631 (854)
T KOG0477|consen  600 GGRYNPSLTFAQNVDLTEPILSRFDILCVVKD  631 (854)
T ss_pred             CCccCCccchhhccccccchhhhcceeeeeec
Confidence               2          377899999987555543

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.80  E-value=2e-05  Score=85.66  Aligned_cols=62  Identities=23%  Similarity=0.331  Sum_probs=46.5

Q ss_pred             cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-cceeeeeec
Q 010975          215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISA  282 (496)
Q Consensus       215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-~~~~i~v~~  282 (496)
                      |+|++|++++++++.+++......      +....+-++|.||||+|||+||++|++.+ ..+++.+.+
T Consensus        75 F~d~yGlee~ieriv~~l~~Aa~g------l~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg  137 (644)
T PRK15455         75 FEEFYGMEEAIEQIVSYFRHAAQG------LEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA  137 (644)
T ss_pred             hhcccCcHHHHHHHHHHHHHHHHh------cCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence            779999999999999988332211      11233568999999999999999999977 345555543

>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=97.76  E-value=2.1e-05  Score=78.21  Aligned_cols=74  Identities=27%  Similarity=0.383  Sum_probs=48.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHh------hhcceeeeeecccccccccC-ChHHHHHHHHHHh--------hhcCCcceeh
Q 010975          250 KGILLFGPPGTGKTMLAKAVAT------ECKTTFFNISASSVVSKWRG-DSEKLIKVLFELA--------RHHAPSTIFL  314 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~------~l~~~~i~v~~s~l~~~~~G-~~e~~l~~lf~~a--------~~~~p~ILfI  314 (496)
                      ..+||.||+|.||+.||+.|-.      ++..+|++++|..+.+...- ..-+.++..|.-+        +....++||+
T Consensus       209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfl  288 (531)
T COG4650         209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFL  288 (531)
T ss_pred             CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEeh
Confidence            4699999999999999998864      55789999999888754110 0001111112111        1122479999


Q ss_pred             hhHHHHHhh
Q 010975          315 DEIDAIISQ  323 (496)
Q Consensus       315 DEID~L~~~  323 (496)
                      |||..+..+
T Consensus       289 deigelgad  297 (531)
T COG4650         289 DEIGELGAD  297 (531)
T ss_pred             HhhhhcCcc
Confidence            999888544

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.73  E-value=6.2e-05  Score=72.08  Aligned_cols=80  Identities=18%  Similarity=0.325  Sum_probs=52.2

Q ss_pred             cccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc-cc----------------------CChHHHH
Q 010975          244 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK-WR----------------------GDSEKLI  297 (496)
Q Consensus       244 ~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~-~~----------------------G~~e~~l  297 (496)
                      .+++...-++++||||+|||+++..++...   +.+.++++..++... ..                      .+....+
T Consensus         7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   86 (209)
T TIGR02237         7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI   86 (209)
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence            345666779999999999999999998755   567787777542110 00                      0011123


Q ss_pred             HHHHHHhhhcCCcceehhhHHHHHhh
Q 010975          298 KVLFELARHHAPSTIFLDEIDAIISQ  323 (496)
Q Consensus       298 ~~lf~~a~~~~p~ILfIDEID~L~~~  323 (496)
                      ..+.+.+....+.+|+||-+..+...
T Consensus        87 ~~l~~~~~~~~~~lvVIDSis~l~~~  112 (209)
T TIGR02237        87 QKTSKFIDRDSASLVVVDSFTALYRL  112 (209)
T ss_pred             HHHHHHHhhcCccEEEEeCcHHHhHH
Confidence            33444444557889999999998643

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.72  E-value=2.3e-05  Score=68.02  Aligned_cols=31  Identities=35%  Similarity=0.662  Sum_probs=27.8

Q ss_pred             eeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975          252 ILLFGPPGTGKTMLAKAVATECKTTFFNISA  282 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l~~~~i~v~~  282 (496)
                      ++|.||||+||||+|+.+|+.+|.+++.++.
T Consensus         2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~   32 (121)
T PF13207_consen    2 IIISGPPGSGKSTLAKELAERLGFPVISMDD   32 (121)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence            6899999999999999999999988776654

...

>PHA02624 large T antigen; Provisional

Probab=97.65  E-value=3.4e-05  Score=84.14  Aligned_cols=39  Identities=28%  Similarity=0.424  Sum_probs=32.9

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS  284 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~  284 (496)
                      ++..+.++|+||||||||+++.+|++.++...+.++++.
T Consensus       428 iPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt  466 (647)
T PHA02624        428 VPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP  466 (647)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc
Confidence            455568999999999999999999999977777787543

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.62  E-value=0.00027  Score=74.40  Aligned_cols=113  Identities=15%  Similarity=0.155  Sum_probs=62.1

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh-------cceeeeeecccccc----------c------ccCChHHHHHHHHHHhh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASSVVS----------K------WRGDSEKLIKVLFELAR  305 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l-------~~~~i~v~~s~l~~----------~------~~G~~e~~l~~lf~~a~  305 (496)
                      ++.++|+||+|+||||++..+|..+       +..+..+++.....          .      ........+...+... 
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-  252 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-  252 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence            4679999999999999999999865       23444443322110          0      1112223344444443 


Q ss_pred             hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHh
Q 010975          306 HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRL  375 (496)
Q Consensus       306 ~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf  375 (496)
                       ....+|+||.+.....+       .    ..+..+...++........++|+.+|.....+. .+..+|
T Consensus       253 -~~~DlVLIDTaGr~~~~-------~----~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~  309 (388)
T PRK12723        253 -KDFDLVLVDTIGKSPKD-------F----MKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQF  309 (388)
T ss_pred             -CCCCEEEEcCCCCCccC-------H----HHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHh
Confidence             23469999998654211       1    112333333333333335677887777766665 344454

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.61  E-value=0.0002  Score=74.83  Aligned_cols=115  Identities=17%  Similarity=0.243  Sum_probs=62.2

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh----c-ceeeeeecccccc----------cccC------ChHHHHHHHHHHhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC----K-TTFFNISASSVVS----------KWRG------DSEKLIKVLFELAR  305 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l----~-~~~i~v~~s~l~~----------~~~G------~~e~~l~~lf~~a~  305 (496)
                      .....++|.||+|+||||++..||..+    | ..+..++......          +..|      .....+...+... 
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-  213 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-  213 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-
Confidence            444679999999999999999999864    3 2444444333210          0000      1111222223322 


Q ss_pred             hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhh
Q 010975          306 HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLE  376 (496)
Q Consensus       306 ~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~  376 (496)
                       ....+|+||......       .     +......+..+.+.......++|+.+|+..+.+... ..+|.
T Consensus       214 -~~~DlVLIDTaG~~~-------~-----d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev-i~~f~  270 (374)
T PRK14722        214 -RNKHMVLIDTIGMSQ-------R-----DRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV-VQAYR  270 (374)
T ss_pred             -cCCCEEEEcCCCCCc-------c-----cHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH-HHHHH
Confidence             234799999884321       1     111222333343333444567888888887776654 34453

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=97.60  E-value=0.00014  Score=64.35  Aligned_cols=53  Identities=19%  Similarity=0.224  Sum_probs=41.3

Q ss_pred             chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.|.|++-+++.+...+...+..+..     ..|--+-|+|+||||||.+++.||+.+
T Consensus        25 ~~l~GQhla~~~v~~ai~~~l~~~~p-----~KpLVlSfHG~tGtGKn~v~~liA~~l   77 (127)
T PF06309_consen   25 RNLFGQHLAVEVVVNAIKGHLANPNP-----RKPLVLSFHGWTGTGKNFVSRLIAEHL   77 (127)
T ss_pred             HHccCcHHHHHHHHHHHHHHHcCCCC-----CCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence            46999999999999888776654321     122345599999999999999999986

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PRK08118 topology modulation protein; Reviewed

Probab=97.58  E-value=0.00011  Score=68.47  Aligned_cols=32  Identities=28%  Similarity=0.552  Sum_probs=29.8

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNISA  282 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~  282 (496)
                      .++++||||+||||+|+.|++.++.+++.++.
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~   34 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA   34 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence            58999999999999999999999999888874

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.58  E-value=0.00011  Score=68.52  Aligned_cols=31  Identities=32%  Similarity=0.354  Sum_probs=24.7

Q ss_pred             eeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975          252 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      ++++||||||||+++..++.+.   |.+++.++.
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~   35 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL   35 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence            6899999999999999887755   556665554

A related protein is found in archaea.

>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]

Probab=97.57  E-value=0.00013  Score=72.94  Aligned_cols=98  Identities=19%  Similarity=0.258  Sum_probs=61.5

Q ss_pred             hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeec-------cc
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA-------SS  284 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~-------s~  284 (496)
                      .+.|+.-+++.+...+......+..     ..|-.+=|+|+|||||..+++.||+.+     ..+++..-.       ..
T Consensus        83 ~lfGQHla~~~Vv~alk~~~~n~~p-----~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~  157 (344)
T KOG2170|consen   83 ALFGQHLAKQLVVNALKSHWANPNP-----RKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS  157 (344)
T ss_pred             HhhchHHHHHHHHHHHHHHhcCCCC-----CCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence            4899999999988888766655431     122345589999999999999999987     222221100       11


Q ss_pred             ccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHh
Q 010975          285 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS  322 (496)
Q Consensus       285 l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~  322 (496)
                      -...|..+....+   ...++..+.+++++||+|+|.+
T Consensus       158 ~ie~Yk~eL~~~v---~~~v~~C~rslFIFDE~DKmp~  192 (344)
T KOG2170|consen  158 KIEDYKEELKNRV---RGTVQACQRSLFIFDEVDKLPP  192 (344)
T ss_pred             HHHHHHHHHHHHH---HHHHHhcCCceEEechhhhcCH
Confidence            1122332333333   3334445558999999999853

>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]

Probab=97.57  E-value=8.2e-05  Score=74.07  Aligned_cols=74  Identities=35%  Similarity=0.377  Sum_probs=53.4

Q ss_pred             cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh--cceeeeeecccccccccCC
Q 010975          215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKWRGD  292 (496)
Q Consensus       215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l--~~~~i~v~~s~l~~~~~G~  292 (496)
                      -..++|++++++.---++.+- +..      ....+.+||.||||||||.||-++++++  +.||+.+.++++.+..+..
T Consensus        37 ~~g~vGQ~~AReAagiivdli-k~K------kmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKK  109 (456)
T KOG1942|consen   37 AAGFVGQENAREAAGIIVDLI-KSK------KMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKK  109 (456)
T ss_pred             ccccccchhhhhhhhHHHHHH-Hhh------hccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhH
Confidence            456899998887643332211 111      1234789999999999999999999999  5789999999988765544


Q ss_pred             hHH
Q 010975          293 SEK  295 (496)
Q Consensus       293 ~e~  295 (496)
                      ++-
T Consensus       110 TEv  112 (456)
T KOG1942|consen  110 TEV  112 (456)
T ss_pred             HHH
Confidence            443

>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]

Probab=97.56  E-value=2.1e-05  Score=89.69  Aligned_cols=206  Identities=20%  Similarity=0.163  Sum_probs=121.9

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhcccccCc-cccccc--cCccc-eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYP-KYFTGL--LSPWK-GILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~-~~~~~~--~~~~~-~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      .+...+.+....++.|.......+.+.+......+ ..+...  ..... .++++||||+|||+.+..+|.++|..+++.
T Consensus       309 ~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~  388 (871)
T KOG1968|consen  309 GWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEK  388 (871)
T ss_pred             ccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeec
Confidence            34455556666778777776667777665442221 112211  11112 379999999999999999999999999999


Q ss_pred             ecccccccccC-----C--hHHHHHHHH---HHhh-hcCC-cceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc
Q 010975          281 SASSVVSKWRG-----D--SEKLIKVLF---ELAR-HHAP-STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL  348 (496)
Q Consensus       281 ~~s~l~~~~~G-----~--~e~~l~~lf---~~a~-~~~p-~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~  348 (496)
                      |.++.++++..     .  ....+...+   .... .+.. .||++||+|.+...  .        +-....+...+.  
T Consensus       389 Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~--d--------Rg~v~~l~~l~~--  456 (871)
T KOG1968|consen  389 NASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE--D--------RGGVSKLSSLCK--  456 (871)
T ss_pred             CccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch--h--------hhhHHHHHHHHH--
Confidence            99988765331     1  111122222   0000 0112 38999999998652  1        111222222222  


Q ss_pred             cccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcc
Q 010975          349 TQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVS  427 (496)
Q Consensus       349 ~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~  427 (496)
                         ...+-+|+++|...-.......|....+.|+.|+.++...-+..++...... .+..++++.+.+    ++||++..
T Consensus       457 ---ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~~i  529 (871)
T KOG1968|consen  457 ---KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQII  529 (871)
T ss_pred             ---hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHHHH
Confidence               1113367788887655555556655679999999998887666666544443 233345555544    56777655


Q ss_pred             hh
Q 010975          428 KE  429 (496)
Q Consensus       428 ~~  429 (496)
                      ..
T Consensus       530 ~~  531 (871)
T KOG1968|consen  530 MQ  531 (871)
T ss_pred             HH
Confidence            43

>PRK07261 topology modulation protein; Provisional

Probab=97.55  E-value=0.00013  Score=68.07  Aligned_cols=35  Identities=20%  Similarity=0.431  Sum_probs=30.2

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSV  285 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l  285 (496)
                      .++++|+||+||||+|+.++..++.+++.++.-..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~   36 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF   36 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence            47899999999999999999999998887765433

>PRK11823 DNA repair protein RadA; Provisional

Probab=97.54  E-value=0.00019  Score=77.09  Aligned_cols=78  Identities=24%  Similarity=0.372  Sum_probs=54.2

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccc------cCC--------hHHHHHHHHHHhhhcC
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW------RGD--------SEKLIKVLFELARHHA  308 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~------~G~--------~e~~l~~lf~~a~~~~  308 (496)
                      +.+..-++|+|+||+|||+++..++...   +.++++++..+-....      .|.        .+..+..+++.....+
T Consensus        77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~  156 (446)
T PRK11823         77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEK  156 (446)
T ss_pred             ccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhC
Confidence            4455678999999999999999998866   5677777764432211      010        1123445666666678


Q ss_pred             CcceehhhHHHHHhh
Q 010975          309 PSTIFLDEIDAIISQ  323 (496)
Q Consensus       309 p~ILfIDEID~L~~~  323 (496)
                      |.+|+||++..+...
T Consensus       157 ~~lVVIDSIq~l~~~  171 (446)
T PRK11823        157 PDLVVIDSIQTMYSP  171 (446)
T ss_pred             CCEEEEechhhhccc
Confidence            899999999988653

>PRK14974 cell division protein FtsY; Provisional

Probab=97.53  E-value=0.00048  Score=71.18  Aligned_cols=34  Identities=24%  Similarity=0.141  Sum_probs=26.4

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      +.-++|+||||+||||++..+|..+   +.++..+++
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~  176 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG  176 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence            4679999999999999999888876   445544544

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.53  E-value=0.00016  Score=70.21  Aligned_cols=39  Identities=26%  Similarity=0.408  Sum_probs=31.3

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecc
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS  283 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s  283 (496)
                      +++...-++++||||+|||+++..+|.+.   +.++++++..
T Consensus        19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e   60 (225)
T PRK09361         19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE   60 (225)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            34555668999999999999999999755   6777777765

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.52  E-value=0.0001  Score=68.34  Aligned_cols=59  Identities=22%  Similarity=0.326  Sum_probs=39.4

Q ss_pred             hhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---eeeeecccc
Q 010975          218 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSV  285 (496)
Q Consensus       218 liG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~---~i~v~~s~l  285 (496)
                      ++|.++..++|...+. ...        ...++.++|+|++|+|||++++.+...+..+   ++.+++...
T Consensus         2 fvgR~~e~~~l~~~l~-~~~--------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~   63 (185)
T PF13191_consen    2 FVGREEEIERLRDLLD-AAQ--------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS   63 (185)
T ss_dssp             -TT-HHHHHHHHHTTG-GTS--------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred             CCCHHHHHHHHHHHHH-HHH--------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence            6899999999999885 211        1234789999999999999999999988554   666666544

>PRK00131 aroK shikimate kinase; Reviewed

Probab=97.51  E-value=7.9e-05  Score=68.59  Aligned_cols=34  Identities=24%  Similarity=0.387  Sum_probs=29.8

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      ++..++|+|+||+|||++|+.+|+.++.+++..+
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d   36 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD   36 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence            3468999999999999999999999998888543

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=97.51  E-value=0.00025  Score=74.33  Aligned_cols=78  Identities=24%  Similarity=0.341  Sum_probs=52.8

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccc------cC--------ChHHHHHHHHHHhhhcC
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW------RG--------DSEKLIKVLFELARHHA  308 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~------~G--------~~e~~l~~lf~~a~~~~  308 (496)
                      +.+..-++|+|+||+|||+++..+|...   +.++++++..+-....      .|        ..+..+..+++.+...+
T Consensus        79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~  158 (372)
T cd01121          79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELK  158 (372)
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcC
Confidence            3445668999999999999999998766   3567777654322110      01        01223455666666778


Q ss_pred             CcceehhhHHHHHhh
Q 010975          309 PSTIFLDEIDAIISQ  323 (496)
Q Consensus       309 p~ILfIDEID~L~~~  323 (496)
                      |.+|+||++..+...
T Consensus       159 ~~lVVIDSIq~l~~~  173 (372)
T cd01121         159 PDLVIIDSIQTVYSS  173 (372)
T ss_pred             CcEEEEcchHHhhcc
Confidence            899999999998643

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]

Probab=97.40  E-value=0.00023  Score=68.83  Aligned_cols=72  Identities=26%  Similarity=0.383  Sum_probs=48.4

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh--------cceeeeeec-ccccccccCC-------------hHHHHHHHHHHhhh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISA-SSVVSKWRGD-------------SEKLIKVLFELARH  306 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l--------~~~~i~v~~-s~l~~~~~G~-------------~e~~l~~lf~~a~~  306 (496)
                      +.+.|+.|||||||||+.|-+|+-+        ...+..++- +++.+-..|.             ..-+-..++...+.
T Consensus       137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs  216 (308)
T COG3854         137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS  216 (308)
T ss_pred             ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence            3578999999999999999999876        234455543 2333322221             11223346677788


Q ss_pred             cCCcceehhhHHHH
Q 010975          307 HAPSTIFLDEIDAI  320 (496)
Q Consensus       307 ~~p~ILfIDEID~L  320 (496)
                      +.|.|+++|||...
T Consensus       217 m~PEViIvDEIGt~  230 (308)
T COG3854         217 MSPEVIIVDEIGTE  230 (308)
T ss_pred             cCCcEEEEeccccH
Confidence            99999999999543

>COG1485 Predicted ATPase [General function prediction only]

Probab=97.39  E-value=0.00051  Score=70.32  Aligned_cols=102  Identities=19%  Similarity=0.271  Sum_probs=56.0

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhhccee-eeeecccccc-------cccCChHHHHHHHHHHhhhcCCcceehhhH
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATECKTTF-FNISASSVVS-------KWRGDSEKLIKVLFELARHHAPSTIFLDEI  317 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~-i~v~~s~l~~-------~~~G~~e~~l~~lf~~a~~~~p~ILfIDEI  317 (496)
                      ..+++|+.|||+-|.|||+|.-..-..+..+- ..+.-..++.       ...|+. .-+..+-+.... ...||++||+
T Consensus        62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~~~-~~~vLCfDEF  139 (367)
T COG1485          62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADELAA-ETRVLCFDEF  139 (367)
T ss_pred             CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHHHh-cCCEEEeeee
Confidence            45779999999999999999999988773321 1111111110       011222 111111111111 2259999999


Q ss_pred             HHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc
Q 010975          318 DAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP  364 (496)
Q Consensus       318 D~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p  364 (496)
                      +.      ++..+.+...++.++|+         ...|.+|+|+|.+
T Consensus       140 ~V------tDI~DAMiL~rL~~~Lf---------~~GV~lvaTSN~~  171 (367)
T COG1485         140 EV------TDIADAMILGRLLEALF---------ARGVVLVATSNTA  171 (367)
T ss_pred             ee------cChHHHHHHHHHHHHHH---------HCCcEEEEeCCCC
Confidence            53      22334444444444443         2247788999976

>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]

Probab=97.39  E-value=0.00013  Score=78.28  Aligned_cols=241  Identities=20%  Similarity=0.228  Sum_probs=116.9

Q ss_pred             CCCCcCCCCCCCCCCCCcccCCchhHHHHHhhcCC-CceecCCccccccc----cccCCCCCCCCCcHHHHHHHHHH-hh
Q 010975          131 ITERPVSDGSSLNSNGHVQNTSDMAVYEQYRTQGS-GSTCLNGVLANVIN----ERLQKPLLPNFDSAETRALAESL-CR  204 (496)
Q Consensus       131 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~  204 (496)
                      +++++++=......--..|.......+-.|+..+. ...+.++..+..+-    ..+.+...+.+.........+-. .+
T Consensus       210 QLPRSVDvilddDLVD~~KPGDRV~ivG~yr~Lp~k~~g~tsg~FRTvliaNni~~l~ke~~~~~t~~Di~~i~klsk~k  289 (818)
T KOG0479|consen  210 QLPRSVDVILDDDLVDRVKPGDRVNIVGIYRSLPGKSNGNTSGTFRTVLIANNIELLSKEAAPDFTDEDIRNIKKLSKKK  289 (818)
T ss_pred             CCCcceeEEecccccccCCCCCeeEEEEEEeeccCccCCcccceeEEEEEeccHHhhcccccccCChhhHHHHHHHHhcC
Confidence            67777654433332233455555555555543332 22222333333321    12233334555555444332211 11


Q ss_pred             hhhhCCCCCcc-chhhcchHHHHHHhhhhcccccCccccccc--cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          205 DIIRGSPDVKW-ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       205 ~~~~~~~~~~l-~dliG~e~vk~~L~e~l~~~~~~~~~~~~~--~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      ++...- ..++ -.|.|.+.+|+.|.-.+.-..  .....++  ++..-+||+.|.|.|.||-|.|.+.+....-+-..-
T Consensus       290 diFdlL-a~SLAPSI~GH~~vKkAillLLlGGv--Ek~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTG  366 (818)
T KOG0479|consen  290 DIFDLL-ARSLAPSIYGHDYVKKAILLLLLGGV--EKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTG  366 (818)
T ss_pred             CHHHHH-hhccCcccccHHHHHHHHHHHHhccc--eeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccC
Confidence            111110 0112 258999999999987764322  1112222  344457999999999999999999886632221110


Q ss_pred             c-c---ccc---ccccCChHHHHHH-HHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccc-cC
Q 010975          282 A-S---SVV---SKWRGDSEKLIKV-LFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SD  352 (496)
Q Consensus       282 ~-s---~l~---~~~~G~~e~~l~~-lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-~~  352 (496)
                      . +   .|.   .......++++.. .+-.|.   .+|++|||+|++...-  ...-|++..+-.-++.  -.|+.. -+
T Consensus       367 RGSSGVGLTAAVTtD~eTGERRLEAGAMVLAD---RGVVCIDEFDKMsDiD--RvAIHEVMEQqtVTIa--KAGIHasLN  439 (818)
T KOG0479|consen  367 RGSSGVGLTAAVTTDQETGERRLEAGAMVLAD---RGVVCIDEFDKMSDID--RVAIHEVMEQQTVTIA--KAGIHASLN  439 (818)
T ss_pred             CCCCCccceeEEeeccccchhhhhcCceEEcc---CceEEehhcccccchh--HHHHHHHHhcceEEeE--eccchhhhc
Confidence            0 0   000   0011123344322 111122   3799999999985321  1112222111111110  012221 23


Q ss_pred             cEEEEEeccCCccc-------------ccHHHHHHhhhhhcc
Q 010975          353 ELVFVLAATNLPWE-------------LDAAMLRRLEKRILV  381 (496)
Q Consensus       353 ~~viVIatTn~p~~-------------Ld~aL~rRf~~~I~~  381 (496)
                      .+.-|+|++|..+.             |+..|++||+..+.+
T Consensus       440 ARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~  481 (818)
T KOG0479|consen  440 ARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVV  481 (818)
T ss_pred             cceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEEEEE
Confidence            45778999997742             888999999874433

>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting

Probab=97.37  E-value=5e-05  Score=58.89  Aligned_cols=33  Identities=39%  Similarity=0.734  Sum_probs=30.4

Q ss_pred             CCCchhHHHHhhcCCCCccc-hhhhhhhhccccc
Q 010975          459 PIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYG  491 (496)
Q Consensus       459 ~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~~g  491 (496)
                      +||++||+.||++++||++. ++.+|++|++.||
T Consensus        29 ~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG   62 (62)
T PF09336_consen   29 PITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG   62 (62)
T ss_dssp             HBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence            59999999999999999996 6999999999998

It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....

>PRK13947 shikimate kinase; Provisional

Probab=97.34  E-value=0.00015  Score=66.94  Aligned_cols=31  Identities=42%  Similarity=0.548  Sum_probs=28.8

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      +++|.|+||+|||++++.+|+.++.+++..+
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d   33 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD   33 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence            6999999999999999999999999997755

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.33  E-value=0.00055  Score=66.90  Aligned_cols=77  Identities=18%  Similarity=0.311  Sum_probs=49.7

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc--------------c------------------
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--------------W------------------  289 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~--------------~------------------  289 (496)
                      +++.+..++++|+||+|||+++..++.+.   +.++++++..+-...              +                  
T Consensus        21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~  100 (234)
T PRK06067         21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEW  100 (234)
T ss_pred             CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEecccccccc
Confidence            35566779999999999999999997653   566666654221110              0                  


Q ss_pred             -cCChHHHHHHHHHHhhhcCCcceehhhHHHHH
Q 010975          290 -RGDSEKLIKVLFELARHHAPSTIFLDEIDAII  321 (496)
Q Consensus       290 -~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~  321 (496)
                       .......+..+.+.....+|.+++||++..+.
T Consensus       101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~  133 (234)
T PRK06067        101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFA  133 (234)
T ss_pred             CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence             00113334444445555678899999998764

>PRK03839 putative kinase; Provisional

Probab=97.30  E-value=0.00017  Score=67.51  Aligned_cols=31  Identities=29%  Similarity=0.525  Sum_probs=28.2

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      .++|.|+||+||||+++.+|+.++.+++.++
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d   32 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT   32 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence            3899999999999999999999999887765

>cd01394 radB RadB

Probab=97.28  E-value=0.00051  Score=66.23  Aligned_cols=39  Identities=31%  Similarity=0.396  Sum_probs=30.4

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecc
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS  283 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s  283 (496)
                      ++....-++++|+||+|||+++..+|.+.   +.++++++..
T Consensus        15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e   56 (218)
T cd01394          15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE   56 (218)
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            34555669999999999999999999766   5667667553

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.27  E-value=0.00017  Score=64.31  Aligned_cols=27  Identities=44%  Similarity=0.783  Sum_probs=23.7

Q ss_pred             eeeeCCCCChhHHHHHHHHhhhcceee
Q 010975          252 ILLFGPPGTGKTMLAKAVATECKTTFF  278 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l~~~~i  278 (496)
                      ++++||||+||||+|+.++..++..++
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~~~~~i   28 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRLGAVVI   28 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHSTEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCEEE
Confidence            689999999999999999999984443

...

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=97.25  E-value=0.0003  Score=67.20  Aligned_cols=34  Identities=35%  Similarity=0.521  Sum_probs=25.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS  283 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s  283 (496)
                      +..++.||||||||++++.+...+   +.+++.+..+
T Consensus        19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT   55 (196)
T PF13604_consen   19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT   55 (196)
T ss_dssp             SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred             eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence            457889999999999999988766   4566655543

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=97.25  E-value=0.00061  Score=71.34  Aligned_cols=74  Identities=24%  Similarity=0.382  Sum_probs=45.5

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcc-----e-eeeeeccc---------------ccccccCChHHHHH---HHHHHhhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKT-----T-FFNISASS---------------VVSKWRGDSEKLIK---VLFELARH  306 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~-----~-~i~v~~s~---------------l~~~~~G~~e~~l~---~lf~~a~~  306 (496)
                      -.+|.||||+|||+|++.|++....     . ++.+....               +.+.+.......++   .+++.|+.
T Consensus       171 R~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~  250 (416)
T PRK09376        171 RGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKR  250 (416)
T ss_pred             eEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999997743     2 22221111               12222233333333   33444432


Q ss_pred             ----cCCcceehhhHHHHHhhh
Q 010975          307 ----HAPSTIFLDEIDAIISQR  324 (496)
Q Consensus       307 ----~~p~ILfIDEID~L~~~r  324 (496)
                          ....+||||||+++....
T Consensus       251 ~~e~G~dVlL~iDsItR~arAq  272 (416)
T PRK09376        251 LVEHGKDVVILLDSITRLARAY  272 (416)
T ss_pred             HHHcCCCEEEEEEChHHHHHHH
Confidence                245699999999997764

>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot)

Probab=97.24  E-value=0.00017  Score=68.60  Aligned_cols=122  Identities=14%  Similarity=0.103  Sum_probs=53.8

Q ss_pred             eeeeCCCCChhHHHHHHH-Hhhh---cceeeeeeccccccccc----CC-hHH------------HHHHHHHHhhhcCCc
Q 010975          252 ILLFGPPGTGKTMLAKAV-ATEC---KTTFFNISASSVVSKWR----GD-SEK------------LIKVLFELARHHAPS  310 (496)
Q Consensus       252 vLL~GPpGtGKT~LAral-A~~l---~~~~i~v~~s~l~~~~~----G~-~e~------------~l~~lf~~a~~~~p~  310 (496)
                      .+++|.||+|||+.|-.. ....   |++++. +..++.-+..    +. ...            ..............+
T Consensus         3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (193)
T PF05707_consen    3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS   81 (193)
T ss_dssp             EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred             EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence            578999999999877554 3322   666554 4432221110    00 000            001111111111457


Q ss_pred             ceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccC
Q 010975          311 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPL  383 (496)
Q Consensus       311 ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~  383 (496)
                      +|+|||++.+.+.+......   .....    ..+......+  .-|+.+|..+..+|+.+++..+..+.+.-
T Consensus        82 liviDEa~~~~~~r~~~~~~---~~~~~----~~l~~hRh~g--~diiliTQ~~~~id~~ir~lve~~~~~~k  145 (193)
T PF05707_consen   82 LIVIDEAQNFFPSRSWKGKK---VPEII----EFLAQHRHYG--WDIILITQSPSQIDKFIRDLVEYHYHCRK  145 (193)
T ss_dssp             EEEETTGGGTSB---T-T-------HHH----HGGGGCCCTT---EEEEEES-GGGB-HHHHCCEEEEEEEEE
T ss_pred             EEEEECChhhcCCCcccccc---chHHH----HHHHHhCcCC--cEEEEEeCCHHHHhHHHHHHHheEEEEEe
Confidence            99999999988776542110   11222    2222112222  34566899999999999887666555543

Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.

>PRK00625 shikimate kinase; Provisional

Probab=97.24  E-value=0.00022  Score=66.84  Aligned_cols=31  Identities=39%  Similarity=0.559  Sum_probs=28.8

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      +++|+|.||+||||+++.+|+.++.+++.++
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D   32 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD   32 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence            5899999999999999999999999988775

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=97.24  E-value=0.00025  Score=70.83  Aligned_cols=95  Identities=22%  Similarity=0.292  Sum_probs=56.8

Q ss_pred             CccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc---ceeeeeec-cccccc
Q 010975          213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSVVSK  288 (496)
Q Consensus       213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~-s~l~~~  288 (496)
                      .+++++.-.....+.+.+.+....+          ...++++.||+|+||||+++++...+.   ..++.+.. .++.-.
T Consensus       101 ~sle~l~~~~~~~~~~~~~l~~~v~----------~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~  170 (270)
T PF00437_consen  101 FSLEDLGESGSIPEEIAEFLRSAVR----------GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLP  170 (270)
T ss_dssp             -CHCCCCHTHHCHHHHHHHHHHCHH----------TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--S
T ss_pred             ccHhhccCchhhHHHHHHHHhhccc----------cceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeec
Confidence            3466666555555566655544321          236799999999999999999999873   34443321 111110


Q ss_pred             ------cc-CChHHHHHHHHHHhhhcCCcceehhhH
Q 010975          289 ------WR-GDSEKLIKVLFELARHHAPSTIFLDEI  317 (496)
Q Consensus       289 ------~~-G~~e~~l~~lf~~a~~~~p~ILfIDEI  317 (496)
                            .. .........++..+-...|.+|+++|+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEi  206 (270)
T PF00437_consen  171 GPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEI  206 (270)
T ss_dssp             CSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE
T ss_pred             ccceEEEEeecCcccHHHHHHHHhcCCCCccccccc
Confidence                  00 112234556667777788999999999

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.23  E-value=0.00039  Score=66.48  Aligned_cols=67  Identities=21%  Similarity=0.305  Sum_probs=41.4

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhc----ceeeeeec-ccccc---------cccCChHHHHHHHHHHhhhcCCcceehhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATECK----TTFFNISA-SSVVS---------KWRGDSEKLIKVLFELARHHAPSTIFLDE  316 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~----~~~i~v~~-s~l~~---------~~~G~~e~~l~~lf~~a~~~~p~ILfIDE  316 (496)
                      -+++.||+|+||||++++++..+.    ..++.+.. .++..         ...|.........+..+-...|.++++||
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE   82 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE   82 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence            478999999999999999988774    22232211 11110         01122122344455555666799999999


Q ss_pred             H
Q 010975          317 I  317 (496)
Q Consensus       317 I  317 (496)
                      +
T Consensus        83 i   83 (198)
T cd01131          83 M   83 (198)
T ss_pred             C
Confidence            8

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK06762 hypothetical protein; Provisional

Probab=97.22  E-value=0.00053  Score=63.13  Aligned_cols=37  Identities=27%  Similarity=0.335  Sum_probs=29.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV  286 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~  286 (496)
                      .-++|+|+||+||||+|+.+++.++..++.++...+.
T Consensus         3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r   39 (166)
T PRK06762          3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR   39 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence            4688999999999999999999986556666654443

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=97.20  E-value=0.00027  Score=63.84  Aligned_cols=31  Identities=29%  Similarity=0.525  Sum_probs=27.8

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      +++|+|+||+|||++|+.+|..++.+++..+
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d   31 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD   31 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence            4789999999999999999999998887554

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.18  E-value=0.00025  Score=64.17  Aligned_cols=32  Identities=41%  Similarity=0.667  Sum_probs=29.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      .++|++|-|||||||++..+|..++.+++.++
T Consensus         8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is   39 (176)
T KOG3347|consen    8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS   39 (176)
T ss_pred             CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence            58999999999999999999999999888764

>TIGR02012 tigrfam_recA protein RecA

Probab=97.16  E-value=0.001  Score=68.20  Aligned_cols=79  Identities=25%  Similarity=0.311  Sum_probs=51.6

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccc----------------cccCChHHHHHHHHHHhh
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----------------KWRGDSEKLIKVLFELAR  305 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~----------------~~~G~~e~~l~~lf~~a~  305 (496)
                      +++..+-++|+||||+|||+|+..++.+.   +.+++.++..+..+                ......+..+..+....+
T Consensus        51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~  130 (321)
T TIGR02012        51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR  130 (321)
T ss_pred             CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence            34555679999999999999988877655   56666666533211                111223334444434445


Q ss_pred             hcCCcceehhhHHHHHhh
Q 010975          306 HHAPSTIFLDEIDAIISQ  323 (496)
Q Consensus       306 ~~~p~ILfIDEID~L~~~  323 (496)
                      ...+.+|+||-+..+.+.
T Consensus       131 ~~~~~lIVIDSv~al~~~  148 (321)
T TIGR02012       131 SGAVDIIVVDSVAALVPK  148 (321)
T ss_pred             ccCCcEEEEcchhhhccc
Confidence            567889999999998753

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]

Probab=97.16  E-value=0.00086  Score=65.91  Aligned_cols=173  Identities=18%  Similarity=0.183  Sum_probs=90.1

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcc---eeeeeeccccccc---------ccC--------ChHHHHHHHHHHhhh-cCC
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKT---TFFNISASSVVSK---------WRG--------DSEKLIKVLFELARH-HAP  309 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~---~~i~v~~s~l~~~---------~~G--------~~e~~l~~lf~~a~~-~~p  309 (496)
                      -+.++|+.|+|||++.|++...++.   -.+.++...+...         ...        ..+..-+.+.+..++ ..|
T Consensus        53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~  132 (269)
T COG3267          53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP  132 (269)
T ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence            4779999999999999977766632   2233433222111         111        111222233333333 445


Q ss_pred             cceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccc-cH---HHHHHhhhhhcccCCC
Q 010975          310 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL-DA---AMLRRLEKRILVPLPD  385 (496)
Q Consensus       310 ~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~L-d~---aL~rRf~~~I~~~~P~  385 (496)
                      .++++||++.+..+.      -+..+.    |.+.-++.... -.++.++-..--..+ -+   .+..|+...+.+++.+
T Consensus       133 v~l~vdEah~L~~~~------le~Lrl----l~nl~~~~~~~-l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~  201 (269)
T COG3267         133 VVLMVDEAHDLNDSA------LEALRL----LTNLEEDSSKL-LSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT  201 (269)
T ss_pred             eEEeehhHhhhChhH------HHHHHH----HHhhcccccCc-eeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence            799999999885431      111111    11111111111 123333322111111 11   2233887668889999


Q ss_pred             HHHHHHHHHhhCCCCCCCC----CCCcceeeecccCCcCCchhhcchhhhccHH
Q 010975          386 TEARRAMFESLLPSQTGEE----SLPYDLLVERTEGYSGSDIRLVSKEAAMQPL  435 (496)
Q Consensus       386 ~eeR~~Il~~~l~~~~~~~----~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~  435 (496)
                      .++....+++.++......    +..+..+...+.| .|.-|..++..|...+.
T Consensus       202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~  254 (269)
T COG3267         202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAY  254 (269)
T ss_pred             hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHH
Confidence            9988888888887664432    2234445666666 44566666665555443

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=97.16  E-value=0.00067  Score=67.92  Aligned_cols=92  Identities=16%  Similarity=0.217  Sum_probs=56.7

Q ss_pred             ccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc---ceeeeee-cccccc--
Q 010975          214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS-ASSVVS--  287 (496)
Q Consensus       214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~-~s~l~~--  287 (496)
                      ++++++-.+...+.|.+.+...             ...+++.||+|+||||+++++...+.   ..++.+. ..++.-  
T Consensus        58 ~l~~lg~~~~~~~~l~~~~~~~-------------~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~  124 (264)
T cd01129          58 DLEKLGLKPENLEIFRKLLEKP-------------HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPG  124 (264)
T ss_pred             CHHHcCCCHHHHHHHHHHHhcC-------------CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCC
Confidence            4667765666666666655321             13589999999999999999987763   3344442 111110  


Q ss_pred             ----cccCChHHHHHHHHHHhhhcCCcceehhhHH
Q 010975          288 ----KWRGDSEKLIKVLFELARHHAPSTIFLDEID  318 (496)
Q Consensus       288 ----~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID  318 (496)
                          .............+..+....|.+|+++|+.
T Consensus       125 ~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR  159 (264)
T cd01129         125 INQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR  159 (264)
T ss_pred             ceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence                0111111234455666667889999999993

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.15  E-value=0.00096  Score=63.91  Aligned_cols=68  Identities=24%  Similarity=0.352  Sum_probs=40.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh-----cceee-------------eeecccccccccCC---hHHHHHHHHHHhhhcC
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC-----KTTFF-------------NISASSVVSKWRGD---SEKLIKVLFELARHHA  308 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l-----~~~~i-------------~v~~s~l~~~~~G~---~e~~l~~lf~~a~~~~  308 (496)
                      +-++|+||+|+||||+.+.++...     |.++-             .++..+-.....+.   ....+..+++.+....
T Consensus        26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~  105 (199)
T cd03283          26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE  105 (199)
T ss_pred             cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence            568999999999999999998533     43221             11111100000001   1134556666665457


Q ss_pred             CcceehhhH
Q 010975          309 PSTIFLDEI  317 (496)
Q Consensus       309 p~ILfIDEI  317 (496)
                      |.++++||.
T Consensus       106 p~llllDEp  114 (199)
T cd03283         106 PVLFLLDEI  114 (199)
T ss_pred             CeEEEEecc
Confidence            899999997

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK13949 shikimate kinase; Provisional

Probab=97.15  E-value=0.00031  Score=65.54  Aligned_cols=32  Identities=41%  Similarity=0.599  Sum_probs=29.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      +.++|+|+||+|||++++.+|+.++.+++..+
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D   33 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD   33 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence            36899999999999999999999999888766

>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]

Probab=97.14  E-value=0.00066  Score=72.12  Aligned_cols=173  Identities=21%  Similarity=0.259  Sum_probs=90.5

Q ss_pred             hhhcchHHHHHHhhhhcccccCccccccc--cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeec----cccccccc
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA----SSVVSKWR  290 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~--~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~----s~l~~~~~  290 (496)
                      .+.|.+++|+.+...+-...+  +....+  +...-+|||.|.|||.|+-|.+-+-+-.-.-++.---    ..|.....
T Consensus       332 SIfG~~DiKkAiaClLFgGsr--K~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~  409 (729)
T KOG0481|consen  332 SIFGHEDIKKAIACLLFGGSR--KRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVI  409 (729)
T ss_pred             hhcCchhHHHHHHHHhhcCcc--ccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEE
Confidence            699999999999987743321  111112  3334579999999999999999887766444432211    11111100


Q ss_pred             CChHHHHHHHHHH---hhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc-ccCcEEEEEeccCCcc-
Q 010975          291 GDSEKLIKVLFEL---ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-QSDELVFVLAATNLPW-  365 (496)
Q Consensus       291 G~~e~~l~~lf~~---a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-~~~~~viVIatTn~p~-  365 (496)
                      ....  .+..+-+   .-....+|++|||+|++-.+-  ...-|++..+..-.+  .-.|+. .-+.+.-|+|++|.+. 
T Consensus       410 RD~~--tReFylEGGAMVLADgGVvCIDEFDKMre~D--RVAIHEAMEQQTISI--AKAGITT~LNSRtSVLAAANpvfG  483 (729)
T KOG0481|consen  410 RDPS--TREFYLEGGAMVLADGGVVCIDEFDKMREDD--RVAIHEAMEQQTISI--AKAGITTTLNSRTSVLAAANPVFG  483 (729)
T ss_pred             ecCC--cceEEEecceEEEecCCEEEeehhhccCchh--hhHHHHHHHhhhHHH--hhhcceeeecchhhhhhhcCCccc
Confidence            0000  0000000   000123799999999984321  112222221111000  001111 1123455888888762 


Q ss_pred             ----------c--ccHHHHHHhhhhhcccCCCHHHHHH-HHHhhC
Q 010975          366 ----------E--LDAAMLRRLEKRILVPLPDTEARRA-MFESLL  397 (496)
Q Consensus       366 ----------~--Ld~aL~rRf~~~I~~~~P~~eeR~~-Il~~~l  397 (496)
                                .  +-+.+++||+.++.+..--.++|-. |.++.+
T Consensus       484 RyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI  528 (729)
T KOG0481|consen  484 RYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVI  528 (729)
T ss_pred             cccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhh
Confidence                      1  4478999999987776654444443 444443

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.14  E-value=0.00055  Score=67.05  Aligned_cols=76  Identities=22%  Similarity=0.357  Sum_probs=46.7

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc-----------------------------ccC--
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK-----------------------------WRG--  291 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~-----------------------------~~G--  291 (496)
                      +++..-+++.||||||||+++..++...   |.+.++++..+-...                             ..+  
T Consensus        21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~  100 (230)
T PRK08533         21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNS  100 (230)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChH
Confidence            4455679999999999999986665544   455555543211100                             000  


Q ss_pred             ChHHHHHHHHHHhhhcCCcceehhhHHHHH
Q 010975          292 DSEKLIKVLFELARHHAPSTIFLDEIDAII  321 (496)
Q Consensus       292 ~~e~~l~~lf~~a~~~~p~ILfIDEID~L~  321 (496)
                      .....+..+.......+|.+++|||+-.+.
T Consensus       101 ~~~~~l~~il~~~~~~~~~~lVIDe~t~~l  130 (230)
T PRK08533        101 EKRKFLKKLMNTRRFYEKDVIIIDSLSSLI  130 (230)
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence            012334445555555678899999998764

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.14  E-value=0.0034  Score=67.16  Aligned_cols=36  Identities=28%  Similarity=0.253  Sum_probs=28.8

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecc
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS  283 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s  283 (496)
                      ++..++++|++|+||||++..+|..+   |.++..+++.
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D  132 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD  132 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence            46779999999999999999999877   4555555553

>PRK14532 adenylate kinase; Provisional

Probab=97.14  E-value=0.00035  Score=65.76  Aligned_cols=34  Identities=29%  Similarity=0.570  Sum_probs=27.9

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV  286 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~  286 (496)
                      +++|.||||+||||+++.+|+.+|..++.  .+++.
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is--~~d~l   35 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGMVQLS--TGDML   35 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEe--CcHHH
Confidence            48999999999999999999999876654  44443

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.13  E-value=0.0013  Score=62.95  Aligned_cols=25  Identities=40%  Similarity=0.470  Sum_probs=21.7

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      |+-++|.||+|+||||.+--+|..+
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~   25 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARL   25 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHH
Confidence            3568999999999999888888866

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.13  E-value=0.00088  Score=64.76  Aligned_cols=40  Identities=25%  Similarity=0.286  Sum_probs=30.0

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh---c------ceeeeeeccc
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---K------TTFFNISASS  284 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~------~~~i~v~~s~  284 (496)
                      ++....-+.|+||||+|||+++..+|...   +      ..+++++..+
T Consensus        15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~   63 (226)
T cd01393          15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG   63 (226)
T ss_pred             CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence            34555668999999999999999998754   3      5666666543

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>TIGR02688 conserved hypothetical protein TIGR02688

Probab=97.13  E-value=0.00041  Score=73.13  Aligned_cols=62  Identities=18%  Similarity=0.279  Sum_probs=38.8

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHH
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAII  321 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~  321 (496)
                      ...++++.||||||||+++.+++...    |   -.++...++....       ...+...  ....+|+|||+..+.
T Consensus       208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~-------~~~lg~v--~~~DlLI~DEvgylp  273 (449)
T TIGR02688       208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS-------TRQIGLV--GRWDVVAFDEVATLK  273 (449)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH-------HHHHhhh--ccCCEEEEEcCCCCc
Confidence            34689999999999999999988762    3   2223333322111       1122221  234799999997753

Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=97.13  E-value=0.00029  Score=65.65  Aligned_cols=32  Identities=28%  Similarity=0.511  Sum_probs=30.0

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      .+++|.|++|+||||+.+++|+.++.+|+..+
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D   34 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD   34 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence            57999999999999999999999999998776

>PHA02774 E1; Provisional

Probab=97.12  E-value=0.00056  Score=74.60  Aligned_cols=35  Identities=23%  Similarity=0.519  Sum_probs=28.4

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhhcceeee-eec
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATECKTTFFN-ISA  282 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~-v~~  282 (496)
                      ..++++|+||||||||++|.+|++.++..++. +|.
T Consensus       433 Kknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~  468 (613)
T PHA02774        433 KKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS  468 (613)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence            34689999999999999999999998655443 553

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.12  E-value=0.00036  Score=65.21  Aligned_cols=33  Identities=24%  Similarity=0.519  Sum_probs=27.0

Q ss_pred             eeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975          252 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV  286 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~  286 (496)
                      ++++||||+||||+|+.+|+.++..  .++.+++.
T Consensus         2 i~i~G~pGsGKst~a~~la~~~~~~--~is~~d~l   34 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENFGFT--HLSAGDLL   34 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCe--EEECChHH
Confidence            6899999999999999999999854  45555544

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=97.12  E-value=0.0011  Score=78.23  Aligned_cols=132  Identities=20%  Similarity=0.220  Sum_probs=86.8

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc--cccCC--------hHHHHHHHHHHhhhcCCcceehhhHHHH
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS--KWRGD--------SEKLIKVLFELARHHAPSTIFLDEIDAI  320 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~--~~~G~--------~e~~l~~lf~~a~~~~p~ILfIDEID~L  320 (496)
                      .+||.||+.+|||+++..+|++.|..|++++-.+...  +|.|.        ..-+-..+.+ |-++. --|++||+...
T Consensus       890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVe-AlR~G-yWIVLDELNLA  967 (4600)
T COG5271         890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVE-ALRRG-YWIVLDELNLA  967 (4600)
T ss_pred             cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHH-HHhcC-cEEEeeccccC
Confidence            5999999999999999999999999999998754432  23321        1111112222 22223 37999999654


Q ss_pred             HhhhcCCcchhHHhhhhhhhhhhhcc-----------CccccCcEEEEEeccCCcc------cccHHHHHHhhhhhcccC
Q 010975          321 ISQRGEARSEHEASRRLKTELLIQMD-----------GLTQSDELVFVLAATNLPW------ELDAAMLRRLEKRILVPL  383 (496)
Q Consensus       321 ~~~r~~~~~~~~~~~~i~~~Ll~~ld-----------~~~~~~~~viVIatTn~p~------~Ld~aL~rRf~~~I~~~~  383 (496)
                      ..+             ++++|-..+|           .+..+....++.||-|.|.      -+..|++.||-. ++|..
T Consensus       968 pTD-------------VLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE-~hFdd 1033 (4600)
T COG5271         968 PTD-------------VLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLE-MHFDD 1033 (4600)
T ss_pred             cHH-------------HHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHh-hhccc
Confidence            322             2222322333           2222334566777878773      388899999955 88888


Q ss_pred             CCHHHHHHHHHhhCC
Q 010975          384 PDTEARRAMFESLLP  398 (496)
Q Consensus       384 P~~eeR~~Il~~~l~  398 (496)
                      -..+|...|++..++
T Consensus      1034 ipedEle~ILh~rc~ 1048 (4600)
T COG5271        1034 IPEDELEEILHGRCE 1048 (4600)
T ss_pred             CcHHHHHHHHhccCc
Confidence            888999999887664

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.11  E-value=0.001  Score=64.76  Aligned_cols=40  Identities=23%  Similarity=0.249  Sum_probs=30.0

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeeccc
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS  284 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s~  284 (496)
                      +++...-+.|+||||+|||+++..++...         +..+++++..+
T Consensus        15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~   63 (235)
T cd01123          15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG   63 (235)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence            34555668999999999999999998543         25667776544

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.11  E-value=0.0023  Score=62.88  Aligned_cols=39  Identities=23%  Similarity=0.340  Sum_probs=29.4

Q ss_pred             cccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975          244 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       244 ~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      .++++...+|++||||+|||+++..++.+.   |.+.++++.
T Consensus        16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~   57 (237)
T TIGR03877        16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL   57 (237)
T ss_pred             CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence            446667789999999999999998876543   556655553

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=97.11  E-value=0.0013  Score=65.36  Aligned_cols=27  Identities=30%  Similarity=0.449  Sum_probs=23.6

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcc
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKT  275 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~  275 (496)
                      +..++|.||+|+|||++++.+++....
T Consensus        16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~   42 (249)
T cd01128          16 GQRGLIVAPPKAGKTTLLQSIANAITK   42 (249)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence            346999999999999999999998744

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK04296 thymidine kinase; Provisional

Probab=97.09  E-value=0.0013  Score=62.38  Aligned_cols=31  Identities=13%  Similarity=0.130  Sum_probs=24.7

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhh---cceeeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATEC---KTTFFNIS  281 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~  281 (496)
                      -.+++||||+|||+++..++.++   +..++.+.
T Consensus         4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k   37 (190)
T PRK04296          4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK   37 (190)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence            47899999999999999988876   55555553

>PF14516 AAA_35: AAA-like domain

Probab=97.07  E-value=0.00087  Score=69.26  Aligned_cols=161  Identities=17%  Similarity=0.125  Sum_probs=84.5

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCC-------------------------------hH
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD-------------------------------SE  294 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~-------------------------------~e  294 (496)
                      +..+.+.||..+|||++...+.+.+   |...+.+++..+.......                               ..
T Consensus        31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~  110 (331)
T PF14516_consen   31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK  110 (331)
T ss_pred             CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence            4678999999999999999988766   6777888776543211100                               11


Q ss_pred             HHHHHHHHHh---hhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc--cc-CcEEEEEeccCCccccc
Q 010975          295 KLIKVLFELA---RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--QS-DELVFVLAATNLPWELD  368 (496)
Q Consensus       295 ~~l~~lf~~a---~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~~-~~~viVIatTn~p~~Ld  368 (496)
                      ......|++.   ...+|-||+|||+|.+....       .....+...|-...+...  .. ..-+++++.+..+....
T Consensus       111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~-------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~  183 (331)
T PF14516_consen  111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP-------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIIL  183 (331)
T ss_pred             hhHHHHHHHHHHhcCCCCEEEEEechhhhccCc-------chHHHHHHHHHHHHHhcccCcccceEEEEEecCccccccc
Confidence            1122223321   12457899999999996431       111222222222222111  11 12234444443332211


Q ss_pred             HHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCc
Q 010975          369 AAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS  419 (496)
Q Consensus       369 ~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s  419 (496)
                      ..-.+  .+...+.++.-+.+|-..+++.+-...  . ...++.+-..+.|..
T Consensus       184 ~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~--~-~~~~~~l~~~tgGhP  233 (331)
T PF14516_consen  184 DINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF--S-QEQLEQLMDWTGGHP  233 (331)
T ss_pred             CCCCCCcccccceeCCCCCHHHHHHHHHhhhccC--C-HHHHHHHHHHHCCCH
Confidence            10011  234456677779999888888763221  1 112555666666643

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.06  E-value=0.0015  Score=67.10  Aligned_cols=78  Identities=24%  Similarity=0.299  Sum_probs=50.9

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccc----------------cccCChHHHHHHHHHHhh
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----------------KWRGDSEKLIKVLFELAR  305 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~----------------~~~G~~e~~l~~lf~~a~  305 (496)
                      +++..+-+.++||||+|||+|+-.++.+.   +...+.++..+-..                ......+..+..+-..++
T Consensus        51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~  130 (325)
T cd00983          51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR  130 (325)
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence            34555668999999999999999987654   66677776532111                011123333333333345


Q ss_pred             hcCCcceehhhHHHHHh
Q 010975          306 HHAPSTIFLDEIDAIIS  322 (496)
Q Consensus       306 ~~~p~ILfIDEID~L~~  322 (496)
                      ...+.+|+||-+-.+.+
T Consensus       131 s~~~~lIVIDSvaal~~  147 (325)
T cd00983         131 SGAVDLIVVDSVAALVP  147 (325)
T ss_pred             ccCCCEEEEcchHhhcc
Confidence            56788999999999875

RecA couples ATP hydrolysis to DNA strand exchange.

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.06  E-value=0.0017  Score=60.61  Aligned_cols=70  Identities=14%  Similarity=0.225  Sum_probs=47.0

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHH--------------------HHHHHHHHhhhcCCc
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEK--------------------LIKVLFELARHHAPS  310 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~--------------------~l~~lf~~a~~~~p~  310 (496)
                      .+++.|+||+|||++|..++..++.+++++........   ++.+                    .+..++... ..++.
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~   78 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR   78 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence            47999999999999999999998877777665443221   1112                    233333321 12356


Q ss_pred             ceehhhHHHHHhhh
Q 010975          311 TIFLDEIDAIISQR  324 (496)
Q Consensus       311 ILfIDEID~L~~~r  324 (496)
                      +++||-+..+..+.
T Consensus        79 ~VlID~Lt~~~~n~   92 (170)
T PRK05800         79 CVLVDCLTTWVTNL   92 (170)
T ss_pred             EEEehhHHHHHHHH
Confidence            89999999987653

>PRK06217 hypothetical protein; Validated

Probab=97.06  E-value=0.00044  Score=65.08  Aligned_cols=31  Identities=26%  Similarity=0.423  Sum_probs=28.3

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      .|+|.|+||+||||+++.|++.++.+++.++
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D   33 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLDIPHLDTD   33 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence            5899999999999999999999998877665

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=97.06  E-value=0.00046  Score=62.36  Aligned_cols=28  Identities=32%  Similarity=0.642  Sum_probs=24.9

Q ss_pred             eeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          252 ILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      ++|+|+||+||||+|+.+++.++..++.
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~~~~~i~   29 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERLGAPFID   29 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence            6899999999999999999998876654

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=97.05  E-value=0.0017  Score=60.70  Aligned_cols=72  Identities=14%  Similarity=0.184  Sum_probs=47.6

Q ss_pred             eeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc-c----------------cCChHHHHHHHHHHhhhcCCcceeh
Q 010975          252 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-W----------------RGDSEKLIKVLFELARHHAPSTIFL  314 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~-~----------------~G~~e~~l~~lf~~a~~~~p~ILfI  314 (496)
                      +|+.|++|+|||++|..++...+.+.+++....-.+. +                ..+....+...+....  .+.+++|
T Consensus         2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI   79 (169)
T cd00544           2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI   79 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence            5899999999999999999887777777755433221 0                0122233334433222  4579999


Q ss_pred             hhHHHHHhhhc
Q 010975          315 DEIDAIISQRG  325 (496)
Q Consensus       315 DEID~L~~~r~  325 (496)
                      |-+..+..+.-
T Consensus        80 Dclt~~~~n~l   90 (169)
T cd00544          80 DCLTLWVTNLL   90 (169)
T ss_pred             EcHhHHHHHhC
Confidence            99999877643

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=97.05  E-value=0.00053  Score=69.86  Aligned_cols=68  Identities=26%  Similarity=0.371  Sum_probs=45.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeec-cccc-------ccccCChHHHHHHHHHHhhhcCCcceehhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA-SSVV-------SKWRGDSEKLIKVLFELARHHAPSTIFLDE  316 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~-s~l~-------~~~~G~~e~~l~~lf~~a~~~~p~ILfIDE  316 (496)
                      .++++.||+|+||||+++++...+     +.+++.+.- .++.       .-..+........++..+-...|..|++.|
T Consensus       133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE  212 (299)
T TIGR02782       133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE  212 (299)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence            689999999999999999999876     233433321 1111       000111111456677777788999999999


Q ss_pred             H
Q 010975          317 I  317 (496)
Q Consensus       317 I  317 (496)
                      +
T Consensus       213 i  213 (299)
T TIGR02782       213 V  213 (299)
T ss_pred             c
Confidence            9

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PRK13948 shikimate kinase; Provisional

Probab=97.05  E-value=0.00053  Score=64.83  Aligned_cols=35  Identities=23%  Similarity=0.303  Sum_probs=31.4

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      .++..++|.|.+|+||||+++.+|+.++.+|+..+
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D   42 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD   42 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence            34578999999999999999999999999998665

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.04  E-value=0.0028  Score=67.73  Aligned_cols=36  Identities=28%  Similarity=0.336  Sum_probs=27.1

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeeccc
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASS  284 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~s~  284 (496)
                      .+.++|.||+|+||||++..+|..+     +..+..+++..
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~  261 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT  261 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence            4578999999999999988887754     34566665543

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.04  E-value=0.0024  Score=64.53  Aligned_cols=37  Identities=27%  Similarity=0.308  Sum_probs=28.4

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh----c-ceeeeeeccc
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC----K-TTFFNISASS  284 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l----~-~~~i~v~~s~  284 (496)
                      .++.++|.||+|+||||++..+|..+    + ..+..++...
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~  234 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT  234 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence            44678999999999999999998866    3 4555565543

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.04  E-value=0.0005  Score=68.99  Aligned_cols=68  Identities=25%  Similarity=0.312  Sum_probs=43.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc----------ceeeeee-ccccccccc-------CC------hHHHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK----------TTFFNIS-ASSVVSKWR-------GD------SEKLIKVLFELAR  305 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~----------~~~i~v~-~s~l~~~~~-------G~------~e~~l~~lf~~a~  305 (496)
                      .+++|.||||+||||+.+.++..+.          .++..++ ..++...+.       |.      ...+...++..++
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~  191 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR  191 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence            5899999999999999999999873          2333222 122211111       10      0112334556666


Q ss_pred             hcCCcceehhhH
Q 010975          306 HHAPSTIFLDEI  317 (496)
Q Consensus       306 ~~~p~ILfIDEI  317 (496)
                      ...|.+|++||+
T Consensus       192 ~~~P~villDE~  203 (270)
T TIGR02858       192 SMSPDVIVVDEI  203 (270)
T ss_pred             hCCCCEEEEeCC
Confidence            678999999996

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.03  E-value=0.0046  Score=65.01  Aligned_cols=58  Identities=26%  Similarity=0.271  Sum_probs=36.3

Q ss_pred             hHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975          222 ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       222 e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      +.+++.+.+.+...+..+..+   ...++.++|.||+|+||||++..||..+   +..+..+++
T Consensus       217 ~~~~~~l~~~l~~~l~~~~~~---~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a  277 (436)
T PRK11889        217 EEVIEYILEDMRSHFNTENVF---EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT  277 (436)
T ss_pred             HHHHHHHHHHHHHHhcccccc---ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence            445555555553333222111   1234679999999999999999999877   344544444

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.02  E-value=0.00052  Score=64.53  Aligned_cols=29  Identities=38%  Similarity=0.659  Sum_probs=25.7

Q ss_pred             eeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          252 ILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      |+|+||||+||||+++.||+.+|..++.+
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~~~~i~~   30 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYGLPHIST   30 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence            78999999999999999999998766543

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.01  E-value=0.00068  Score=64.01  Aligned_cols=69  Identities=26%  Similarity=0.346  Sum_probs=43.5

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhc--ceeeeeec-cccccc-------------ccCChHHHHHHHHHHhhhcCCcce
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECK--TTFFNISA-SSVVSK-------------WRGDSEKLIKVLFELARHHAPSTI  312 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~--~~~i~v~~-s~l~~~-------------~~G~~e~~l~~lf~~a~~~~p~IL  312 (496)
                      ...++|.||+|+||||++++++..+.  ...+.+.. .++...             ..+........++..+....|.++
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i  104 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI  104 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence            46799999999999999999998762  12222211 111100             001112334556666667789999


Q ss_pred             ehhhH
Q 010975          313 FLDEI  317 (496)
Q Consensus       313 fIDEI  317 (496)
                      +++|+
T Consensus       105 ~igEi  109 (186)
T cd01130         105 IVGEV  109 (186)
T ss_pred             EEEcc
Confidence            99999

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=97.01  E-value=0.002  Score=62.33  Aligned_cols=22  Identities=32%  Similarity=0.529  Sum_probs=20.2

Q ss_pred             ceeeeeCCCCChhHHHHHHHHh
Q 010975          250 KGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~  271 (496)
                      +.++|+||.|+|||++.+.++.
T Consensus        30 ~~~~itGpNg~GKStlLk~i~~   51 (213)
T cd03281          30 SIMVITGPNSSGKSVYLKQVAL   51 (213)
T ss_pred             eEEEEECCCCCChHHHHHHHHH
Confidence            6699999999999999999984

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=97.00  E-value=0.00048  Score=64.25  Aligned_cols=34  Identities=21%  Similarity=0.399  Sum_probs=29.0

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS  283 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s  283 (496)
                      +-++|.|+||+||||+|+.++..++.+++.++..
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D   36 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD   36 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence            4689999999999999999999998777765543

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK06581 DNA polymerase III subunit delta'; Validated

Probab=97.00  E-value=0.0024  Score=62.69  Aligned_cols=135  Identities=10%  Similarity=0.058  Sum_probs=90.7

Q ss_pred             ceeeeeCCCC-ChhHHHHHHHHhhhcce---------eeeeecccccccc-cCChHHHHHHHHHHhh----hcCCcceeh
Q 010975          250 KGILLFGPPG-TGKTMLAKAVATECKTT---------FFNISASSVVSKW-RGDSEKLIKVLFELAR----HHAPSTIFL  314 (496)
Q Consensus       250 ~~vLL~GPpG-tGKT~LAralA~~l~~~---------~i~v~~s~l~~~~-~G~~e~~l~~lf~~a~----~~~p~ILfI  314 (496)
                      +..||.|..+ +||..++.-++..+...         ++.+....-..+. ..-.-..+|.+.+.+.    .....|++|
T Consensus        16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViII   95 (263)
T PRK06581         16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAII   95 (263)
T ss_pred             heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEEE
Confidence            5799999998 99999998888876322         2333221100000 0012344555554443    233469999


Q ss_pred             hhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHH
Q 010975          315 DEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFE  394 (496)
Q Consensus       315 DEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~  394 (496)
                      +++|.|..             ...+.||+.+++   ++..+++|..|..+..+.+.+++|+.. +.++.|+...-.++..
T Consensus        96 ~~ae~mt~-------------~AANALLKtLEE---PP~~t~fILit~~~~~LLpTIrSRCq~-i~~~~p~~~~~~e~~~  158 (263)
T PRK06581         96 YSAELMNL-------------NAANSCLKILED---APKNSYIFLITSRAASIISTIRSRCFK-INVRSSILHAYNELYS  158 (263)
T ss_pred             echHHhCH-------------HHHHHHHHhhcC---CCCCeEEEEEeCChhhCchhHhhceEE-EeCCCCCHHHHHHHHH
Confidence            99999843             234778888873   445566777788888999999999966 9999999988888877


Q ss_pred             hhCCCCC
Q 010975          395 SLLPSQT  401 (496)
Q Consensus       395 ~~l~~~~  401 (496)
                      ..+....
T Consensus       159 ~~~~p~~  165 (263)
T PRK06581        159 QFIQPIA  165 (263)
T ss_pred             Hhccccc
Confidence            7765543

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=96.99  E-value=0.00055  Score=62.81  Aligned_cols=28  Identities=32%  Similarity=0.611  Sum_probs=24.6

Q ss_pred             eeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          252 ILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      ++|.||||+||||+++.+++.++..++.
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~   28 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIE   28 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence            5789999999999999999999866653

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=96.99  E-value=0.00054  Score=61.17  Aligned_cols=30  Identities=30%  Similarity=0.572  Sum_probs=27.7

Q ss_pred             eeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          252 ILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      +.+.|+||+|||++|+.+|..++.+++..+
T Consensus         2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~   31 (147)
T cd02020           2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG   31 (147)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence            579999999999999999999999988776

>PRK14530 adenylate kinase; Provisional

Probab=96.99  E-value=0.00062  Score=65.73  Aligned_cols=31  Identities=32%  Similarity=0.507  Sum_probs=27.2

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      ..++|.||||+||||+++.||+.++.+++.+
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~   34 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT   34 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence            4689999999999999999999998776644

>PRK14531 adenylate kinase; Provisional

Probab=96.97  E-value=0.00064  Score=64.00  Aligned_cols=30  Identities=27%  Similarity=0.556  Sum_probs=26.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      +.++++||||+||||+++.+|+.+|.+.+.
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is   32 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS   32 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence            469999999999999999999999876554

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=96.96  E-value=0.0027  Score=65.64  Aligned_cols=60  Identities=18%  Similarity=0.173  Sum_probs=46.9

Q ss_pred             hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV  285 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l  285 (496)
                      .+.+.+...+.+...+...-         -.-|.++.|+|..|||||.+++.+.+.++.+.+.+++-+.
T Consensus         7 ~v~~Re~qi~~L~~Llg~~~---------~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ec   66 (438)
T KOG2543|consen    7 NVPCRESQIRRLKSLLGNNS---------CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVEC   66 (438)
T ss_pred             CccchHHHHHHHHHHhCCCC---------cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHh
Confidence            46677888888888763311         1234678999999999999999999999999998887543

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=96.96  E-value=0.0024  Score=61.94  Aligned_cols=77  Identities=25%  Similarity=0.368  Sum_probs=50.1

Q ss_pred             cccCccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeecccccc-----------------------------cc-
Q 010975          244 GLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVS-----------------------------KW-  289 (496)
Q Consensus       244 ~~~~~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~s~l~~-----------------------------~~-  289 (496)
                      .+++++..+|+.||||+|||+++..++.+.    |.+.+.++..+-..                             .. 
T Consensus        14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~   93 (226)
T PF06745_consen   14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI   93 (226)
T ss_dssp             TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred             CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence            345666779999999999999999877543    56666665321110                             00 


Q ss_pred             ---cCChHHHHHHHHHHhhhcCCcceehhhHHHH
Q 010975          290 ---RGDSEKLIKVLFELARHHAPSTIFLDEIDAI  320 (496)
Q Consensus       290 ---~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L  320 (496)
                         .......+..+.+..+..++.+++||-+..+
T Consensus        94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l  127 (226)
T PF06745_consen   94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL  127 (226)
T ss_dssp             T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred             cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence               1123444555556666677799999999998

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.96  E-value=0.0043  Score=62.39  Aligned_cols=36  Identities=22%  Similarity=0.248  Sum_probs=27.7

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecc
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS  283 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s  283 (496)
                      +++-++|+||+|+||||++..+|..+   |..+.-+++.
T Consensus        71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D  109 (272)
T TIGR00064        71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD  109 (272)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            34678889999999999999998877   5555555543

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=96.96  E-value=0.0021  Score=61.42  Aligned_cols=22  Identities=23%  Similarity=0.455  Sum_probs=20.2

Q ss_pred             ceeeeeCCCCChhHHHHHHHHh
Q 010975          250 KGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~  271 (496)
                      .-++|+||.|+||||+.+.++.
T Consensus        30 ~~~~l~G~Ng~GKStll~~i~~   51 (202)
T cd03243          30 RLLLITGPNMGGKSTYLRSIGL   51 (202)
T ss_pred             eEEEEECCCCCccHHHHHHHHH
Confidence            4699999999999999999993

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=96.95  E-value=0.00097  Score=57.54  Aligned_cols=24  Identities=38%  Similarity=0.544  Sum_probs=20.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ++++++||+|+|||+++-.++.+.
T Consensus         1 ~~~~i~~~~G~GKT~~~~~~~~~~   24 (144)
T cd00046           1 RDVLLAAPTGSGKTLAALLPILEL   24 (144)
T ss_pred             CCEEEECCCCCchhHHHHHHHHHH
Confidence            368999999999999888887766

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=96.92  E-value=0.00094  Score=62.91  Aligned_cols=34  Identities=35%  Similarity=0.715  Sum_probs=27.3

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV  286 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~  286 (496)
                      .++|.||||+||||+|+.|++.  .++..++..++.
T Consensus         2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~   35 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDIL   35 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHh
Confidence            4899999999999999999999  455566654443

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=96.91  E-value=0.0013  Score=69.68  Aligned_cols=120  Identities=20%  Similarity=0.165  Sum_probs=68.4

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcch
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE  330 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~  330 (496)
                      -++|+||.+|||||+++.+........+.++..+....... ..... ..+..+.......+|||||+.+-.        
T Consensus        39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~-l~d~~-~~~~~~~~~~~~yifLDEIq~v~~--------  108 (398)
T COG1373          39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIE-LLDLL-RAYIELKEREKSYIFLDEIQNVPD--------  108 (398)
T ss_pred             EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhh-HHHHH-HHHHHhhccCCceEEEecccCchh--------
Confidence            78999999999999999999888665666665555433221 11112 222222222346999999977621        


Q ss_pred             hHHhhhhhhhhhhhccCccccCcEEEEEeccCCc---ccccHHHHHHhhhhhcccCCCHHHHHH
Q 010975          331 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLP---WELDAAMLRRLEKRILVPLPDTEARRA  391 (496)
Q Consensus       331 ~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p---~~Ld~aL~rRf~~~I~~~~P~~eeR~~  391 (496)
                            +...+-...|....   .+++. +++..   ..+.+.+..|. ..+.+.+.+..|...
T Consensus       109 ------W~~~lk~l~d~~~~---~v~it-gsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~  161 (398)
T COG1373         109 ------WERALKYLYDRGNL---DVLIT-GSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK  161 (398)
T ss_pred             ------HHHHHHHHHccccc---eEEEE-CCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence                  22222222331111   34443 44433   23445566685 447777888888865

>PRK13695 putative NTPase; Provisional

Probab=96.90  E-value=0.0018  Score=60.27  Aligned_cols=23  Identities=43%  Similarity=0.608  Sum_probs=20.6

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .++|+|++|+||||+++.+++.+
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l   24 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELL   24 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999988765

>PRK13946 shikimate kinase; Provisional

Probab=96.90  E-value=0.00072  Score=63.73  Aligned_cols=32  Identities=25%  Similarity=0.486  Sum_probs=29.9

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      +.|+|.|+||+|||++++.+|+.+|.+++..+
T Consensus        11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D   42 (184)
T PRK13946         11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD   42 (184)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence            67999999999999999999999999998766

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=96.88  E-value=0.00084  Score=62.70  Aligned_cols=33  Identities=27%  Similarity=0.667  Sum_probs=29.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA  282 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~  282 (496)
                      ..++|.||+|+|||++++.+|..++.+++..+.
T Consensus         5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~   37 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ   37 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence            579999999999999999999999988877654

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=96.88  E-value=0.0012  Score=68.60  Aligned_cols=68  Identities=21%  Similarity=0.270  Sum_probs=43.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc----ceeeeeec-cccc---------ccccCChHHHHHHHHHHhhhcCCcceehh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK----TTFFNISA-SSVV---------SKWRGDSEKLIKVLFELARHHAPSTIFLD  315 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~----~~~i~v~~-s~l~---------~~~~G~~e~~l~~lf~~a~~~~p~ILfID  315 (496)
                      ..+++.||+|+||||+++++...+.    ..++.+.- .++.         ....|.........++.+-...|.+|++|
T Consensus       123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg  202 (343)
T TIGR01420       123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG  202 (343)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence            4689999999999999999998764    23333311 1111         11122212234455666667889999999


Q ss_pred             hH
Q 010975          316 EI  317 (496)
Q Consensus       316 EI  317 (496)
                      |+
T Consensus       203 Ei  204 (343)
T TIGR01420       203 EM  204 (343)
T ss_pred             CC
Confidence            99

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=96.87  E-value=0.00084  Score=62.11  Aligned_cols=32  Identities=28%  Similarity=0.465  Sum_probs=28.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      ..++|+|+||+|||++++.+|+.+|.+++..+
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D   34 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD   34 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence            46899999999999999999999999988654

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.87  E-value=0.0064  Score=63.64  Aligned_cols=60  Identities=22%  Similarity=0.211  Sum_probs=41.3

Q ss_pred             chHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975          221 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       221 ~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      .+.+.+.+.+.+...+..+..+.  ..+++.++|.||+|+||||++..+|..+   +.++..+++
T Consensus       180 ~~~v~~~~~~~L~~~l~~~~~~~--~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIta  242 (407)
T PRK12726        180 LDDITDWFVPYLSGKLAVEDSFD--LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITT  242 (407)
T ss_pred             HHHHHHHHHHHhcCcEeeCCCce--ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            46677777777765544433222  2345678999999999999999999866   445555554

>TIGR00416 sms DNA repair protein RadA

Probab=96.87  E-value=0.002  Score=69.34  Aligned_cols=77  Identities=25%  Similarity=0.333  Sum_probs=51.7

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccc------cCC--------hHHHHHHHHHHhhhcC
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW------RGD--------SEKLIKVLFELARHHA  308 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~------~G~--------~e~~l~~lf~~a~~~~  308 (496)
                      +.+..-++|.|+||+|||+++..++...   +.++++++..+-....      .|.        .+..+..+...+...+
T Consensus        91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~  170 (454)
T TIGR00416        91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEEN  170 (454)
T ss_pred             ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcC
Confidence            4455679999999999999999998766   3567777654322110      010        0122345555666678


Q ss_pred             CcceehhhHHHHHh
Q 010975          309 PSTIFLDEIDAIIS  322 (496)
Q Consensus       309 p~ILfIDEID~L~~  322 (496)
                      |.+++||.|..+..
T Consensus       171 ~~~vVIDSIq~l~~  184 (454)
T TIGR00416       171 PQACVIDSIQTLYS  184 (454)
T ss_pred             CcEEEEecchhhcc
Confidence            89999999998854

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=96.85  E-value=0.0059  Score=60.77  Aligned_cols=37  Identities=27%  Similarity=0.233  Sum_probs=28.4

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeec
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA  282 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~  282 (496)
                      +.+..-++|.||||+|||+++..++...    +.+++.++.
T Consensus        27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~   67 (271)
T cd01122          27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL   67 (271)
T ss_pred             EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence            4455678999999999999999887764    556665554

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PTZ00088 adenylate kinase 1; Provisional

Probab=96.84  E-value=0.001  Score=65.26  Aligned_cols=31  Identities=32%  Similarity=0.598  Sum_probs=27.2

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      ..++|.||||+||||+|+.+|+.++.+++.+
T Consensus         7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~   37 (229)
T PTZ00088          7 LKIVLFGAPGVGKGTFAEILSKKENLKHINM   37 (229)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence            3599999999999999999999998766654

>PRK13764 ATPase; Provisional

Probab=96.81  E-value=0.002  Score=71.32  Aligned_cols=68  Identities=22%  Similarity=0.369  Sum_probs=40.8

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhc---ceeeeee-cccc-----cccccCChHHHHHHHHHHhhhcCCcceehhhH
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS-ASSV-----VSKWRGDSEKLIKVLFELARHHAPSTIFLDEI  317 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~-~s~l-----~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEI  317 (496)
                      ..++|++||||+||||++++++..+.   ..+..+. ..++     ...+.. ...........+-...|.++++||+
T Consensus       257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEi  333 (602)
T PRK13764        257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEM  333 (602)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCC
Confidence            36899999999999999999998874   2232221 1111     112210 0011122223334567999999998

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=96.81  E-value=0.00088  Score=61.57  Aligned_cols=28  Identities=32%  Similarity=0.536  Sum_probs=25.8

Q ss_pred             eeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          252 ILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      +-+.|||||||||+++.+|..+|.+++.
T Consensus         3 ItIsG~pGsG~TTva~~lAe~~gl~~vs   30 (179)
T COG1102           3 ITISGLPGSGKTTVARELAEHLGLKLVS   30 (179)
T ss_pred             EEeccCCCCChhHHHHHHHHHhCCceee
Confidence            5688999999999999999999999875

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=96.80  E-value=0.002  Score=66.68  Aligned_cols=69  Identities=26%  Similarity=0.367  Sum_probs=46.7

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhc--ceeeeee-cccccc------------c-ccCChHHHHHHHHHHhhhcCCcce
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECK--TTFFNIS-ASSVVS------------K-WRGDSEKLIKVLFELARHHAPSTI  312 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~--~~~i~v~-~s~l~~------------~-~~G~~e~~l~~lf~~a~~~~p~IL  312 (496)
                      ..+++++|++|+||||+++++...+.  .+++.+. ..++.-            . ..|...-....+++.+....|..|
T Consensus       160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I  239 (332)
T PRK13900        160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI  239 (332)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence            36899999999999999999999873  2333331 111110            0 012222245667788888999999


Q ss_pred             ehhhH
Q 010975          313 FLDEI  317 (496)
Q Consensus       313 fIDEI  317 (496)
                      ++.|+
T Consensus       240 ivGEi  244 (332)
T PRK13900        240 IVGEL  244 (332)
T ss_pred             EEEec
Confidence            99999

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=96.79  E-value=0.0011  Score=68.03  Aligned_cols=68  Identities=22%  Similarity=0.337  Sum_probs=45.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh-----cceeeeee-ccccccc------ccCChHHHHHHHHHHhhhcCCcceehhhH
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS-ASSVVSK------WRGDSEKLIKVLFELARHHAPSTIFLDEI  317 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~-~s~l~~~------~~G~~e~~l~~lf~~a~~~~p~ILfIDEI  317 (496)
                      .++++.|++|+||||++++++...     +.+++.+. ..++.-.      ......-....++..+-...|..|++.|+
T Consensus       145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi  224 (323)
T PRK13833        145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV  224 (323)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence            689999999999999999999876     23344332 1122110      11111223556777777889999999999

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.79  E-value=0.0036  Score=59.85  Aligned_cols=24  Identities=50%  Similarity=0.719  Sum_probs=22.1

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhc
Q 010975          251 GILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      -++|+|+||+|||++|+.+|+++.
T Consensus         3 LiIlTGyPgsGKTtfakeLak~L~   26 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAKELR   26 (261)
T ss_pred             eEEEecCCCCCchHHHHHHHHHHH
Confidence            378999999999999999999994

>PRK06547 hypothetical protein; Provisional

Probab=96.79  E-value=0.0011  Score=62.14  Aligned_cols=33  Identities=30%  Similarity=0.433  Sum_probs=28.0

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      +.-|++.|++|+|||++++.+++.++.+++.++
T Consensus        15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d   47 (172)
T PRK06547         15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHLD   47 (172)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence            356888999999999999999999887766543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.78  E-value=0.0049  Score=71.60  Aligned_cols=52  Identities=23%  Similarity=0.142  Sum_probs=35.9

Q ss_pred             cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975          215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA  282 (496)
Q Consensus       215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~  282 (496)
                      -.+++-.....+.|.+..               ..+-++++||+|.||||++...+...+ ++..++.
T Consensus        13 ~~~~~~R~rl~~~l~~~~---------------~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l   64 (903)
T PRK04841         13 LHNTVVRERLLAKLSGAN---------------NYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL   64 (903)
T ss_pred             ccccCcchHHHHHHhccc---------------CCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence            345666666666554422               124589999999999999999988776 6555544

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.77  E-value=0.0075  Score=63.96  Aligned_cols=35  Identities=23%  Similarity=0.364  Sum_probs=26.3

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh----cceeeeeecc
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISAS  283 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~s  283 (496)
                      +.-++|.||+|+||||++..+|...    |..+..+++.
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D  261 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD  261 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc
Confidence            3458899999999999999999755    3445555443

>PRK14528 adenylate kinase; Provisional

Probab=96.77  E-value=0.0011  Score=62.74  Aligned_cols=31  Identities=32%  Similarity=0.578  Sum_probs=26.9

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      +.+++.||||+||||+++.+++.++.+.+.+
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~   32 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST   32 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence            3589999999999999999999998776543

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.75  E-value=0.0011  Score=61.93  Aligned_cols=29  Identities=28%  Similarity=0.472  Sum_probs=25.0

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFF  278 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i  278 (496)
                      .-+++.||||+||||+++.+++.+|...+
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~   32 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHL   32 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            35889999999999999999999876544

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.75  E-value=0.00087  Score=58.15  Aligned_cols=22  Identities=45%  Similarity=0.643  Sum_probs=20.9

Q ss_pred             eeeeCCCCChhHHHHHHHHhhh
Q 010975          252 ILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l  273 (496)
                      |+|.|+|||||||+|+.|++++
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999997

...

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.75  E-value=0.0025  Score=59.94  Aligned_cols=72  Identities=21%  Similarity=0.170  Sum_probs=41.6

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhhcc--eeeeeecccc--ccccc-CChHHHHHHHHHHhhhcCCcceehhhHH
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISASSV--VSKWR-GDSEKLIKVLFELARHHAPSTIFLDEID  318 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l~~--~~i~v~~s~l--~~~~~-G~~e~~l~~lf~~a~~~~p~ILfIDEID  318 (496)
                      .+..-+.|.||.|+|||||++.++.....  --+.++...+  ..... =....+-+-.+..+-...|.++++||--
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPt   99 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPS   99 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence            34456889999999999999999986511  1122222111  11110 0111222334445555678999999984

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=96.73  E-value=0.0049  Score=58.17  Aligned_cols=20  Identities=25%  Similarity=0.497  Sum_probs=18.6

Q ss_pred             eeeeCCCCChhHHHHHHHHh
Q 010975          252 ILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~  271 (496)
                      ++|+||.|+|||++.|.++.
T Consensus         2 ~~ltG~N~~GKst~l~~i~~   21 (185)
T smart00534        2 VIITGPNMGGKSTYLRQVGL   21 (185)
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            68999999999999999994

>PF13245 AAA_19: Part of AAA domain

Probab=96.72  E-value=0.0018  Score=52.28  Aligned_cols=23  Identities=48%  Similarity=0.677  Sum_probs=17.5

Q ss_pred             eeeeeCCCCChhH-HHHHHHHhhh
Q 010975          251 GILLFGPPGTGKT-MLAKAVATEC  273 (496)
Q Consensus       251 ~vLL~GPpGtGKT-~LAralA~~l  273 (496)
                      -+++.|||||||| ++++.++...
T Consensus        12 ~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   12 LFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH
Confidence            4566999999999 6666666655

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=96.72  E-value=0.0014  Score=68.76  Aligned_cols=68  Identities=24%  Similarity=0.297  Sum_probs=43.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc-----ceeeeeecc-ccc-----------ccccCChHHHHHHHHHHhhhcCCcce
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK-----TTFFNISAS-SVV-----------SKWRGDSEKLIKVLFELARHHAPSTI  312 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~-----~~~i~v~~s-~l~-----------~~~~G~~e~~l~~lf~~a~~~~p~IL  312 (496)
                      ..+|++||+|+||||+++++.+.+.     .+++.+.-. ++.           ...+|.........+..+-...|.+|
T Consensus       150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I  229 (372)
T TIGR02525       150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII  229 (372)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence            4589999999999999999988762     344444211 111           01112111234455566667789999


Q ss_pred             ehhhH
Q 010975          313 FLDEI  317 (496)
Q Consensus       313 fIDEI  317 (496)
                      +++|+
T Consensus       230 ~vGEi  234 (372)
T TIGR02525       230 GVGEI  234 (372)
T ss_pred             eeCCC
Confidence            99999

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=96.71  E-value=0.001  Score=61.80  Aligned_cols=30  Identities=30%  Similarity=0.468  Sum_probs=26.9

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      .++++|.|||||||+++.++ .+|...+.++
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~   31 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN   31 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence            47899999999999999999 8998887765

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=96.71  E-value=0.0029  Score=65.32  Aligned_cols=59  Identities=20%  Similarity=0.290  Sum_probs=44.0

Q ss_pred             chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-cceeeee
Q 010975          216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNI  280 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-~~~~i~v  280 (496)
                      +++.|++++++++.+++...-+..      ....+-++|.||+|+|||++++.+-+-+ ..+++.+
T Consensus        61 ~~~~G~~~~i~~lV~~fk~AA~g~------~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l  120 (358)
T PF08298_consen   61 DEFYGMEETIERLVNYFKSAAQGL------EERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTL  120 (358)
T ss_pred             ccccCcHHHHHHHHHHHHHHHhcc------CccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEe
Confidence            379999999999999885543211      2223568899999999999999999877 3344444

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>PRK02496 adk adenylate kinase; Provisional

Probab=96.70  E-value=0.0012  Score=62.06  Aligned_cols=30  Identities=27%  Similarity=0.547  Sum_probs=26.1

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      .+++.||||+||||+++.++..++.+.+.+
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~   32 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST   32 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence            489999999999999999999998765543

>PRK04328 hypothetical protein; Provisional

Probab=96.70  E-value=0.0071  Score=59.92  Aligned_cols=37  Identities=22%  Similarity=0.302  Sum_probs=27.2

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeee
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS  281 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~  281 (496)
                      ++++...+|++||||+|||+++..++.+.   |.+.++++
T Consensus        19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis   58 (249)
T PRK04328         19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA   58 (249)
T ss_pred             CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence            35566779999999999999998876542   44554444

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=96.70  E-value=0.0023  Score=63.23  Aligned_cols=34  Identities=26%  Similarity=0.510  Sum_probs=27.4

Q ss_pred             eeeeCCCCChhHHHHHHHHhhh---cceeeeeecccc
Q 010975          252 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV  285 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l  285 (496)
                      |+|+|+||+||||+|+.++..+   +..++.++...+
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l   38 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI   38 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence            6899999999999999999988   455666655434

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=96.68  E-value=0.0016  Score=66.89  Aligned_cols=69  Identities=23%  Similarity=0.445  Sum_probs=45.3

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh-----cceeeeee-cccccc------cccCChHHHHHHHHHHhhhcCCcceehhh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS-ASSVVS------KWRGDSEKLIKVLFELARHHAPSTIFLDE  316 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~-~s~l~~------~~~G~~e~~l~~lf~~a~~~~p~ILfIDE  316 (496)
                      ..++++.|++|+||||++++++...     ..+++.+. ..++.-      .+..........++..+-...|..|++.|
T Consensus       148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE  227 (319)
T PRK13894        148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE  227 (319)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence            3689999999999999999999864     22333221 112210      11111122356677777889999999999


Q ss_pred             H
Q 010975          317 I  317 (496)
Q Consensus       317 I  317 (496)
                      +
T Consensus       228 i  228 (319)
T PRK13894        228 V  228 (319)
T ss_pred             c
Confidence            9

>TIGR01351 adk adenylate kinases

Probab=96.67  E-value=0.0012  Score=63.40  Aligned_cols=33  Identities=30%  Similarity=0.634  Sum_probs=27.0

Q ss_pred             eeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975          252 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV  286 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~  286 (496)
                      +++.||||+||||+|+.+|+.+|...+.  .+++.
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdll   34 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLL   34 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHH
Confidence            7899999999999999999998866554  44443

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.67  E-value=0.01  Score=60.97  Aligned_cols=35  Identities=23%  Similarity=0.191  Sum_probs=27.3

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      .+.-++|.||+|+||||++..+|..+   +..+.-+++
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~  150 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG  150 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence            34568899999999999999999877   445554444

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.67  E-value=0.0032  Score=61.99  Aligned_cols=133  Identities=12%  Similarity=0.215  Sum_probs=72.6

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhhccee---eeeeccccccc---c-----cC------ChHHHHH-------HHHH
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATECKTTF---FNISASSVVSK---W-----RG------DSEKLIK-------VLFE  302 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l~~~~---i~v~~s~l~~~---~-----~G------~~e~~l~-------~lf~  302 (496)
                      ..+-.+++.|++|||||+++..+...+...+   +.+.. .....   +     +.      +.+..+.       +...
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~-~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~   89 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP-EYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIK   89 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec-CCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhh
Confidence            3445799999999999999999988774322   22221 11111   1     00      0111111       1111


Q ss_pred             Hhhh---cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhh
Q 010975          303 LARH---HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRI  379 (496)
Q Consensus       303 ~a~~---~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I  379 (496)
                      ....   ..+.+|++|++..   .    .    .-......++.     ..+.-++.+|..+.....+++.++.-.+.++
T Consensus        90 k~~~~k~~~~~LiIlDD~~~---~----~----~k~~~l~~~~~-----~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i  153 (241)
T PF04665_consen   90 KSPQKKNNPRFLIILDDLGD---K----K----LKSKILRQFFN-----NGRHYNISIIFLSQSYFHLPPNIRSNIDYFI  153 (241)
T ss_pred             hhcccCCCCCeEEEEeCCCC---c----h----hhhHHHHHHHh-----cccccceEEEEEeeecccCCHHHhhcceEEE
Confidence            1111   2256889999732   0    0    01122233332     1233346677778888889999988777766


Q ss_pred             cccCCCHHHHHHHHHhhC
Q 010975          380 LVPLPDTEARRAMFESLL  397 (496)
Q Consensus       380 ~~~~P~~eeR~~Il~~~l  397 (496)
                      .+. .+..+...|++.+.
T Consensus       154 ~~~-~s~~dl~~i~~~~~  170 (241)
T PF04665_consen  154 IFN-NSKRDLENIYRNMN  170 (241)
T ss_pred             Eec-CcHHHHHHHHHhcc
Confidence            665 46677776766654

This is thought to be an ATPase involved in viral DNA packaging [].

>PLN02674 adenylate kinase

Probab=96.67  E-value=0.0017  Score=64.20  Aligned_cols=36  Identities=25%  Similarity=0.553  Sum_probs=29.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS  287 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~  287 (496)
                      ..++|.||||+||+|+++.+|+.++.  ..++.+++..
T Consensus        32 ~~i~l~G~PGsGKgT~a~~La~~~~~--~his~GdllR   67 (244)
T PLN02674         32 KRLILIGPPGSGKGTQSPIIKDEYCL--CHLATGDMLR   67 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHcCC--cEEchhHHHH
Confidence            56999999999999999999999985  4555555543

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=96.66  E-value=0.0017  Score=66.42  Aligned_cols=36  Identities=25%  Similarity=0.456  Sum_probs=31.7

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      ..+...++|+|+||+|||++++.+|..+|.+++.++
T Consensus       130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D  165 (309)
T PRK08154        130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN  165 (309)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence            455678999999999999999999999999999544

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=96.65  E-value=0.0042  Score=57.54  Aligned_cols=32  Identities=34%  Similarity=0.405  Sum_probs=26.2

Q ss_pred             eeeeCCCCChhHHHHHHHHhhh---cceeeeeecc
Q 010975          252 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS  283 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s  283 (496)
                      +++.||||+|||++++.++..+   +.++..+++.
T Consensus         3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D   37 (173)
T cd03115           3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD   37 (173)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence            6889999999999999999876   5566666654

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PLN02200 adenylate kinase family protein

Probab=96.64  E-value=0.0017  Score=63.80  Aligned_cols=37  Identities=19%  Similarity=0.297  Sum_probs=30.1

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS  287 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~  287 (496)
                      +.-+++.||||+||||+++.+|+.+|..  .++.+++..
T Consensus        43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR   79 (234)
T PLN02200         43 PFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR   79 (234)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence            3568999999999999999999999864  466666653

>TIGR00767 rho transcription termination factor Rho

Probab=96.64  E-value=0.0044  Score=65.20  Aligned_cols=27  Identities=30%  Similarity=0.443  Sum_probs=23.4

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      ++..++|.||||+|||++++.+++.+.
T Consensus       167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~  193 (415)
T TIGR00767       167 KGQRGLIVAPPKAGKTVLLQKIAQAIT  193 (415)
T ss_pred             CCCEEEEECCCCCChhHHHHHHHHhhc
Confidence            345699999999999999999999763

Members of this family differ in the specificity of RNA binding.

>PRK00279 adk adenylate kinase; Reviewed

Probab=96.64  E-value=0.0015  Score=63.13  Aligned_cols=34  Identities=29%  Similarity=0.595  Sum_probs=27.7

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV  286 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~  286 (496)
                      .|+++||||+||||+++.+|..++...+.  .+++.
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is--~~dl~   35 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS--TGDML   35 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEE--CCccH
Confidence            38999999999999999999999865554  44443

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=96.64  E-value=0.0059  Score=58.28  Aligned_cols=21  Identities=29%  Similarity=0.553  Sum_probs=19.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHH
Q 010975          250 KGILLFGPPGTGKTMLAKAVA  270 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA  270 (496)
                      +.++|+||.|+||||+.+.++
T Consensus        29 ~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          29 RVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             eEEEEECCCCCChHHHHHHHH
Confidence            459999999999999999998

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.63  E-value=0.0028  Score=67.94  Aligned_cols=89  Identities=25%  Similarity=0.234  Sum_probs=54.0

Q ss_pred             CccchhhcchHHHHHHhhhhcccccCccccccccCccce-eeeeCCCCChhHHHHHHHHhhhcceeeeee-cccccc---
Q 010975          213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKG-ILLFGPPGTGKTMLAKAVATECKTTFFNIS-ASSVVS---  287 (496)
Q Consensus       213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~-vLL~GPpGtGKT~LAralA~~l~~~~i~v~-~s~l~~---  287 (496)
                      .++++++......+.+.+.+..              +.| +|++||+|+||||...++.++++.+...+- ..+-..   
T Consensus       235 l~l~~Lg~~~~~~~~~~~~~~~--------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~  300 (500)
T COG2804         235 LDLEKLGMSPFQLARLLRLLNR--------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQL  300 (500)
T ss_pred             CCHHHhCCCHHHHHHHHHHHhC--------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeec
Confidence            3455555555566666655533              355 778899999999999999999865543221 111110   


Q ss_pred             c---------ccC-ChHHHHHHHHHHhhhcCCcceehhhHHH
Q 010975          288 K---------WRG-DSEKLIKVLFELARHHAPSTIFLDEIDA  319 (496)
Q Consensus       288 ~---------~~G-~~e~~l~~lf~~a~~~~p~ILfIDEID~  319 (496)
                      .         -.| .++.    .++..-...|.||++.||-.
T Consensus       301 ~gI~Q~qVN~k~gltfa~----~LRa~LRqDPDvImVGEIRD  338 (500)
T COG2804         301 PGINQVQVNPKIGLTFAR----ALRAILRQDPDVIMVGEIRD  338 (500)
T ss_pred             CCcceeecccccCCCHHH----HHHHHhccCCCeEEEeccCC
Confidence            1         011 1233    33444457899999999943

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=96.63  E-value=0.0027  Score=68.96  Aligned_cols=94  Identities=18%  Similarity=0.241  Sum_probs=58.1

Q ss_pred             CCCccchhhcchHHHHHHhhhhcccccCccccccccCccce-eeeeCCCCChhHHHHHHHHhhhc---ceeeeeec-ccc
Q 010975          211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKG-ILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSV  285 (496)
Q Consensus       211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~-vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~-s~l  285 (496)
                      ...+++++.-.++..+.+.+.+..+              .| ++++||+|+||||+..++.++++   ..++.+.- -+.
T Consensus       217 ~~~~l~~Lg~~~~~~~~l~~~~~~~--------------~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~  282 (486)
T TIGR02533       217 VRLDLETLGMSPELLSRFERLIRRP--------------HGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY  282 (486)
T ss_pred             CCCCHHHcCCCHHHHHHHHHHHhcC--------------CCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence            3456778776777777777766332              44 78999999999999998888774   33443321 111


Q ss_pred             cccccC------ChHHHHHHHHHHhhhcCCcceehhhHH
Q 010975          286 VSKWRG------DSEKLIKVLFELARHHAPSTIFLDEID  318 (496)
Q Consensus       286 ~~~~~G------~~e~~l~~lf~~a~~~~p~ILfIDEID  318 (496)
                      .-...+      .........+..+-...|.||++.|+-
T Consensus       283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR  321 (486)
T TIGR02533       283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR  321 (486)
T ss_pred             ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence            100011      111123344555566889999999983

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]

Probab=96.62  E-value=0.0018  Score=75.99  Aligned_cols=145  Identities=18%  Similarity=0.193  Sum_probs=80.3

Q ss_pred             CccceeeeeCCCCChhHHH-HHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhc--------------CCcc
Q 010975          247 SPWKGILLFGPPGTGKTML-AKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHH--------------APST  311 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~L-AralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~--------------~p~I  311 (496)
                      ...++++++||||+|||++ .-++-+++-..++.+|-+.-..     ++..+..+-+....+              +-.|
T Consensus      1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lV 1566 (3164)
T COG5245        1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPKPVVKDLV 1566 (3164)
T ss_pred             hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccCcchhheE
Confidence            4457999999999999985 5667777777788777654321     222332222211111              1139


Q ss_pred             eehhhHHHHHhhhcC-CcchhHHhhhhhhh--hhhhccCccccCcEEEEEeccCCccc-----ccHHHHHHhhhhhcccC
Q 010975          312 IFLDEIDAIISQRGE-ARSEHEASRRLKTE--LLIQMDGLTQSDELVFVLAATNLPWE-----LDAAMLRRLEKRILVPL  383 (496)
Q Consensus       312 LfIDEID~L~~~r~~-~~~~~~~~~~i~~~--Ll~~ld~~~~~~~~viVIatTn~p~~-----Ld~aL~rRf~~~I~~~~  383 (496)
                      ||.|||+ |...+.- .+..--..+.+...  +...+..-...-.++++.+++|.+.+     ....+.||- ..+.+.+
T Consensus      1567 LFcDeIn-Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~vf~~y 1644 (3164)
T COG5245        1567 LFCDEIN-LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKP-VFVFCCY 1644 (3164)
T ss_pred             EEeeccC-CccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCc-eEEEecC
Confidence            9999998 4322211 11100011111111  11111111122346888999998854     334444443 5578889


Q ss_pred             CCHHHHHHHHHhhCC
Q 010975          384 PDTEARRAMFESLLP  398 (496)
Q Consensus       384 P~~eeR~~Il~~~l~  398 (496)
                      |.......|.+.++.
T Consensus      1645 pe~~SL~~Iyea~l~ 1659 (3164)
T COG5245        1645 PELASLRNIYEAVLM 1659 (3164)
T ss_pred             cchhhHHHHHHHHHH
Confidence            999888888887664

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=96.62  E-value=0.0054  Score=61.15  Aligned_cols=38  Identities=16%  Similarity=0.270  Sum_probs=29.0

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      ++++...++++||||+|||+++..++.+.   |.+.++++.
T Consensus        32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~   72 (259)
T TIGR03878        32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV   72 (259)
T ss_pred             CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence            45666779999999999999999887643   556655554

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=96.61  E-value=0.0025  Score=65.18  Aligned_cols=71  Identities=24%  Similarity=0.345  Sum_probs=45.3

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhhc--ceeeeee-ccccccc------------ccCChHHHHHHHHHHhhhcCCcce
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFNIS-ASSVVSK------------WRGDSEKLIKVLFELARHHAPSTI  312 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l~--~~~i~v~-~s~l~~~------------~~G~~e~~l~~lf~~a~~~~p~IL  312 (496)
                      ...++++.||+|+||||++++++..+.  ...+.+. ..++.-.            ..+...-....++..+....|.+|
T Consensus       143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~i  222 (308)
T TIGR02788       143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRI  222 (308)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeE
Confidence            346899999999999999999998773  2222221 1111100            001112234556677777889999


Q ss_pred             ehhhHH
Q 010975          313 FLDEID  318 (496)
Q Consensus       313 fIDEID  318 (496)
                      ++||+-
T Consensus       223 i~gE~r  228 (308)
T TIGR02788       223 ILGELR  228 (308)
T ss_pred             EEeccC
Confidence            999993

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK14527 adenylate kinase; Provisional

Probab=96.60  E-value=0.0015  Score=61.86  Aligned_cols=31  Identities=32%  Similarity=0.520  Sum_probs=26.3

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      +.-+++.||||+||||+|+.+++.++...+.
T Consensus         6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is   36 (191)
T PRK14527          6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLS   36 (191)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence            3569999999999999999999998765443

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.60  E-value=0.0023  Score=50.49  Aligned_cols=22  Identities=36%  Similarity=0.590  Sum_probs=20.5

Q ss_pred             eeeeCCCCChhHHHHHHHHhhh
Q 010975          252 ILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.+.|+||+|||++++.+++.+
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999986

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK09354 recA recombinase A; Provisional

Probab=96.60  E-value=0.006  Score=63.28  Aligned_cols=78  Identities=24%  Similarity=0.296  Sum_probs=50.2

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc----------------ccCChHHHHHHHHHHhh
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELAR  305 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~----------------~~G~~e~~l~~lf~~a~  305 (496)
                      +++..+-++|+||||||||+|+-.++.+.   |...++++..+-...                -....+..+..+-...+
T Consensus        56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~  135 (349)
T PRK09354         56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR  135 (349)
T ss_pred             CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence            35555678999999999999999887654   666676665331110                11122333333333344


Q ss_pred             hcCCcceehhhHHHHHh
Q 010975          306 HHAPSTIFLDEIDAIIS  322 (496)
Q Consensus       306 ~~~p~ILfIDEID~L~~  322 (496)
                      ...+.+|+||-+-.+.+
T Consensus       136 s~~~~lIVIDSvaaL~~  152 (349)
T PRK09354        136 SGAVDLIVVDSVAALVP  152 (349)
T ss_pred             cCCCCEEEEeChhhhcc
Confidence            56788999999998875

>PRK04040 adenylate kinase; Provisional

Probab=96.60  E-value=0.0018  Score=61.44  Aligned_cols=29  Identities=24%  Similarity=0.397  Sum_probs=25.2

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh--cceee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC--KTTFF  278 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l--~~~~i  278 (496)
                      .-++++|+||+||||+++.+++.+  +..++
T Consensus         3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~   33 (188)
T PRK04040          3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV   33 (188)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence            568999999999999999999999  55543

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.59  E-value=0.0029  Score=58.39  Aligned_cols=73  Identities=19%  Similarity=0.126  Sum_probs=43.2

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhhc--ceeeeeeccccc--------cc---ccC--ChHHHHHHHHHHhhhcCCc
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVV--------SK---WRG--DSEKLIKVLFELARHHAPS  310 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l~--~~~i~v~~s~l~--------~~---~~G--~~e~~l~~lf~~a~~~~p~  310 (496)
                      +.+...+.|.||+|+|||||.+.++....  .--+.++...+.        ..   |..  ....+-+-.+..+-...|.
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~  102 (163)
T cd03216          23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR  102 (163)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence            34556799999999999999999998761  111222221111        00   110  0112223345555567789


Q ss_pred             ceehhhHH
Q 010975          311 TIFLDEID  318 (496)
Q Consensus       311 ILfIDEID  318 (496)
                      +|++||-.
T Consensus       103 illlDEP~  110 (163)
T cd03216         103 LLILDEPT  110 (163)
T ss_pred             EEEEECCC
Confidence            99999984

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=96.53  E-value=0.002  Score=67.84  Aligned_cols=44  Identities=34%  Similarity=0.499  Sum_probs=37.1

Q ss_pred             CccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+++|..-.++++++|.+--                 .|+|+.||||.||||+|+++|.-+
T Consensus       244 ~~ledY~L~dkl~eRL~era-----------------eGILIAG~PGaGKsTFaqAlAefy  287 (604)
T COG1855         244 LSLEDYGLSDKLKERLEERA-----------------EGILIAGAPGAGKSTFAQALAEFY  287 (604)
T ss_pred             echhhcCCCHHHHHHHHhhh-----------------cceEEecCCCCChhHHHHHHHHHH
Confidence            45667777788888888743                 699999999999999999999976

>KOG2383 consensus Predicted ATPase [General function prediction only]

Probab=96.53  E-value=0.016  Score=60.34  Aligned_cols=28  Identities=39%  Similarity=0.587  Sum_probs=24.1

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      -.+|+|+.|||.-|||||+|.-..-..+
T Consensus       111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~  138 (467)
T KOG2383|consen  111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL  138 (467)
T ss_pred             CCCCceEEEecccCcchhHHHHHHhhcC
Confidence            3568999999999999999998887655

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.53  E-value=0.0019  Score=59.34  Aligned_cols=26  Identities=38%  Similarity=0.551  Sum_probs=21.1

Q ss_pred             eeeeCCCCChhHHHHHHHHhhhcceee
Q 010975          252 ILLFGPPGTGKTMLAKAVATECKTTFF  278 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l~~~~i  278 (496)
                      |.|+|+||||||||++.|++. |.+++
T Consensus         2 I~i~G~~stGKTTL~~~L~~~-g~~~v   27 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR-GYPVV   27 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred             EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence            789999999999999999998 87766

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=96.52  E-value=0.0017  Score=58.99  Aligned_cols=32  Identities=34%  Similarity=0.623  Sum_probs=25.5

Q ss_pred             eeCCCCChhHHHHHHHHhhhcceeeeeecccccc
Q 010975          254 LFGPPGTGKTMLAKAVATECKTTFFNISASSVVS  287 (496)
Q Consensus       254 L~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~  287 (496)
                      |.||||+||||+++.||+.+|..  .++.+++..
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~--~is~~~llr   32 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLV--HISVGDLLR   32 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSE--EEEHHHHHH
T ss_pred             CcCCCCCChHHHHHHHHHhcCcc--eechHHHHH
Confidence            58999999999999999998764  555555543

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=96.51  E-value=0.0026  Score=60.74  Aligned_cols=22  Identities=41%  Similarity=0.720  Sum_probs=17.1

Q ss_pred             eeeeCCCCChhHHHHHHHHhhh
Q 010975          252 ILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .++.||||||||+++..++..+
T Consensus        20 ~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   20 TLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             EEEE-STTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHh
Confidence            7899999999997666666655

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.51  E-value=0.0057  Score=55.30  Aligned_cols=72  Identities=22%  Similarity=0.346  Sum_probs=42.3

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhhcc--eeeeeecc---cccccccCChHHHHHHHHHHhhhcCCcceehhhHHH
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISAS---SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA  319 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l~~--~~i~v~~s---~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~  319 (496)
                      +.+...+.|.||+|+|||||++.++.....  --+.++..   .+...+.+  ...-+-.+..+-..+|.++++||-..
T Consensus        23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~--G~~~rv~laral~~~p~illlDEP~~   99 (144)
T cd03221          23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSG--GEKMRLALAKLLLENPNLLLLDEPTN   99 (144)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            345567899999999999999999997621  11111111   00011111  12222234455556788999999843

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=96.50  E-value=0.0058  Score=58.25  Aligned_cols=41  Identities=27%  Similarity=0.331  Sum_probs=31.7

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh-cceeeeeeccccccc
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSVVSK  288 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l-~~~~i~v~~s~l~~~  288 (496)
                      .|.-+++.|+||+|||++++.+...+ +..++.++..++...
T Consensus        14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~   55 (199)
T PF06414_consen   14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF   55 (199)
T ss_dssp             S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred             CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence            44678999999999999999999988 788888888777654

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>TIGR01448 recD_rel helicase, putative, RecD/TraA family

Probab=96.49  E-value=0.005  Score=70.09  Aligned_cols=71  Identities=21%  Similarity=0.263  Sum_probs=41.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh---c--ceeeeeeccccc----ccccCChHHHHHHHHHHhh----------hcCCc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC---K--TTFFNISASSVV----SKWRGDSEKLIKVLFELAR----------HHAPS  310 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l---~--~~~i~v~~s~l~----~~~~G~~e~~l~~lf~~a~----------~~~p~  310 (496)
                      +-++|.|+||||||++++++...+   +  .+++-+..+.-.    .+..|.....+++++....          .....
T Consensus       339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~  418 (720)
T TIGR01448       339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD  418 (720)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence            468999999999999999997766   3  344433322111    1112222233444443211          12346


Q ss_pred             ceehhhHHHH
Q 010975          311 TIFLDEIDAI  320 (496)
Q Consensus       311 ILfIDEID~L  320 (496)
                      +|+|||+..+
T Consensus       419 llIvDEaSMv  428 (720)
T TIGR01448       419 LLIVDESSMM  428 (720)
T ss_pred             EEEEeccccC
Confidence            9999999554

This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.48  E-value=0.0021  Score=64.67  Aligned_cols=72  Identities=22%  Similarity=0.361  Sum_probs=47.6

Q ss_pred             ccce-eeeeCCCCChhHHHHHHHHhhhcce----eeeee---------cccccc-cccCChHHHHHHHHHHhhhcCCcce
Q 010975          248 PWKG-ILLFGPPGTGKTMLAKAVATECKTT----FFNIS---------ASSVVS-KWRGDSEKLIKVLFELARHHAPSTI  312 (496)
Q Consensus       248 ~~~~-vLL~GPpGtGKT~LAralA~~l~~~----~i~v~---------~s~l~~-~~~G~~e~~l~~lf~~a~~~~p~IL  312 (496)
                      .++| ||++||+|+||||...++-..+|.+    ++.+.         -..+.. ..+|.-.......++.|-...|.||
T Consensus       123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVI  202 (353)
T COG2805         123 SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVI  202 (353)
T ss_pred             CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEE
Confidence            3456 7888999999999999999888543    33331         112211 2334444445556667777889999


Q ss_pred             ehhhHHH
Q 010975          313 FLDEIDA  319 (496)
Q Consensus       313 fIDEID~  319 (496)
                      ++-|+-.
T Consensus       203 lvGEmRD  209 (353)
T COG2805         203 LVGEMRD  209 (353)
T ss_pred             EEecccc
Confidence            9988843

>PRK04182 cytidylate kinase; Provisional

Probab=96.46  E-value=0.0022  Score=59.33  Aligned_cols=29  Identities=34%  Similarity=0.551  Sum_probs=26.5

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      .++|.|+||+|||++++.+|+.++.+++.
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg~~~id   30 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLGLKHVS   30 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence            37899999999999999999999988765

>PRK01184 hypothetical protein; Provisional

Probab=96.44  E-value=0.0022  Score=60.13  Aligned_cols=29  Identities=31%  Similarity=0.424  Sum_probs=24.6

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      -++|+||||+||||+++ +++++|.+++..
T Consensus         3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~   31 (184)
T PRK01184          3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM   31 (184)
T ss_pred             EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence            47899999999999998 788888777654

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function

Probab=96.43  E-value=0.0027  Score=66.07  Aligned_cols=23  Identities=52%  Similarity=0.638  Sum_probs=21.5

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      -+++.|.||||||.||-.++.++
T Consensus         3 v~~I~G~aGTGKTvla~~l~~~l   25 (352)
T PF09848_consen    3 VILITGGAGTGKTVLALNLAKEL   25 (352)
T ss_pred             EEEEEecCCcCHHHHHHHHHHHh
Confidence            47899999999999999999988

It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.42  E-value=0.0025  Score=62.54  Aligned_cols=26  Identities=27%  Similarity=0.416  Sum_probs=22.5

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.--+.|.||+|||||||.+.+|.-.
T Consensus        28 ~GEfvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          28 KGEFVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33458999999999999999999855

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.42  E-value=0.0062  Score=66.25  Aligned_cols=78  Identities=19%  Similarity=0.218  Sum_probs=54.5

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc--------------c--------------cCCh
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--------------W--------------RGDS  293 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~--------------~--------------~G~~  293 (496)
                      ++.+...+|+.||||+|||+++-.++.+.   |-+.++++..+-...              +              ....
T Consensus       259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~  338 (484)
T TIGR02655       259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL  338 (484)
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence            45666779999999999999999998866   555666654222111              0              0112


Q ss_pred             HHHHHHHHHHhhhcCCcceehhhHHHHHh
Q 010975          294 EKLIKVLFELARHHAPSTIFLDEIDAIIS  322 (496)
Q Consensus       294 e~~l~~lf~~a~~~~p~ILfIDEID~L~~  322 (496)
                      +..+..+.+.+...+|.+++||-+..+..
T Consensus       339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~  367 (484)
T TIGR02655       339 EDHLQIIKSEIADFKPARIAIDSLSALAR  367 (484)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence            45666777777777889999999988754

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PF13479 AAA_24: AAA domain

Probab=96.40  E-value=0.0067  Score=58.63  Aligned_cols=68  Identities=26%  Similarity=0.332  Sum_probs=38.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc-------ccccCChHHHHHHHHHHh--hhcCCcceehhhHHHH
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV-------SKWRGDSEKLIKVLFELA--RHHAPSTIFLDEIDAI  320 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~-------~~~~G~~e~~l~~lf~~a--~~~~p~ILfIDEID~L  320 (496)
                      -.++|||+||+|||++|..+-+-+   ++.+..+...       ..+.-.+-..+...+..+  ......+|+||-++.+
T Consensus         4 ~~~lIyG~~G~GKTt~a~~~~k~l---~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~   80 (213)
T PF13479_consen    4 IKILIYGPPGSGKTTLAASLPKPL---FIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWL   80 (213)
T ss_pred             eEEEEECCCCCCHHHHHHhCCCeE---EEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHH
Confidence            469999999999999999982211   2233222110       001111233344444433  2334579999988776

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=96.39  E-value=0.012  Score=56.99  Aligned_cols=38  Identities=24%  Similarity=0.199  Sum_probs=29.2

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      ++++...+++.|+||+|||+++..++...   +.+.++++.
T Consensus        12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~   52 (224)
T TIGR03880        12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL   52 (224)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            34556679999999999999999887643   666666654

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>PRK10436 hypothetical protein; Provisional

Probab=96.39  E-value=0.0036  Score=67.51  Aligned_cols=93  Identities=16%  Similarity=0.223  Sum_probs=57.9

Q ss_pred             CCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc---ceeeeeec-ccccc
Q 010975          212 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSVVS  287 (496)
Q Consensus       212 ~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~-s~l~~  287 (496)
                      ..++++++-.+...+.+.+.+..+             ..-+|++||+|+||||+..++..+++   .+++.+-- -+..-
T Consensus       194 ~~~L~~LG~~~~~~~~l~~~~~~~-------------~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l  260 (462)
T PRK10436        194 ALDLETLGMTPAQLAQFRQALQQP-------------QGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL  260 (462)
T ss_pred             CCCHHHcCcCHHHHHHHHHHHHhc-------------CCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC
Confidence            446788877777777777766432             23488999999999999988777763   33333321 11110


Q ss_pred             c-----ccC-ChHHHHHHHHHHhhhcCCcceehhhH
Q 010975          288 K-----WRG-DSEKLIKVLFELARHHAPSTIFLDEI  317 (496)
Q Consensus       288 ~-----~~G-~~e~~l~~lf~~a~~~~p~ILfIDEI  317 (496)
                      .     .++ .........+..+-...|.||++.||
T Consensus       261 ~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEI  296 (462)
T PRK10436        261 AGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEI  296 (462)
T ss_pred             CCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCC
Confidence            0     011 11122444555666688999999998

>PRK08233 hypothetical protein; Provisional

Probab=96.39  E-value=0.0029  Score=58.75  Aligned_cols=31  Identities=23%  Similarity=0.288  Sum_probs=25.0

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhc-ceeeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECK-TTFFNIS  281 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~-~~~i~v~  281 (496)
                      -|.+.|+||+||||+|+.|+..++ .+++..+
T Consensus         5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d   36 (182)
T PRK08233          5 IITIAAVSGGGKTTLTERLTHKLKNSKALYFD   36 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence            477889999999999999999985 4444443

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.38  E-value=0.0066  Score=57.07  Aligned_cols=26  Identities=19%  Similarity=0.235  Sum_probs=21.7

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~  271 (496)
                      +.+..-+.|.||+|+|||||.+.++.
T Consensus        18 i~~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          18 IPLNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence            34445689999999999999999964

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.0063  Score=63.65  Aligned_cols=98  Identities=23%  Similarity=0.348  Sum_probs=65.7

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh--cceeeeeecccccccc------cC--------ChHHHHHHHHHHhhhcCC
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKW------RG--------DSEKLIKVLFELARHHAP  309 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l--~~~~i~v~~s~l~~~~------~G--------~~e~~l~~lf~~a~~~~p  309 (496)
                      +-+..-+||-|.||.|||||.-.++..+  ..++.++++.+-....      .|        -.+..+..+.+.+...+|
T Consensus        90 ~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p  169 (456)
T COG1066          90 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKP  169 (456)
T ss_pred             cccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCC
Confidence            3444568899999999999998888877  3378888875533221      11        245567778888888999


Q ss_pred             cceehhhHHHHHhhh-cCCcchhHHhhhhhhhhhh
Q 010975          310 STIFLDEIDAIISQR-GEARSEHEASRRLKTELLI  343 (496)
Q Consensus       310 ~ILfIDEID~L~~~r-~~~~~~~~~~~~i~~~Ll~  343 (496)
                      .+++||-|..+.... ++.++.-...+....+|..
T Consensus       170 ~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~  204 (456)
T COG1066         170 DLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMR  204 (456)
T ss_pred             CEEEEeccceeecccccCCCCcHHHHHHHHHHHHH
Confidence            999999999987653 2333333333444444443

>PRK06696 uridine kinase; Validated

Probab=96.36  E-value=0.0031  Score=61.29  Aligned_cols=37  Identities=22%  Similarity=0.239  Sum_probs=30.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV  286 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~  286 (496)
                      .-|.+.|++|+||||+|+.|+..+   |.+++.++..++.
T Consensus        23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~   62 (223)
T PRK06696         23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH   62 (223)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence            458899999999999999999999   5677776665553

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.36  E-value=0.0033  Score=57.91  Aligned_cols=39  Identities=26%  Similarity=0.337  Sum_probs=32.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK  288 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~  288 (496)
                      .-++|+|.||+||||+|+++.+.+   +.+++.+++..+...
T Consensus         3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~   44 (156)
T PF01583_consen    3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG   44 (156)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc
Confidence            458899999999999999999988   788999988776643

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=96.35  E-value=0.0017  Score=65.75  Aligned_cols=36  Identities=22%  Similarity=0.495  Sum_probs=31.0

Q ss_pred             eeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc
Q 010975          252 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS  287 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~  287 (496)
                      +++.||+|+|||++|..+|++++..++.++.-.+..
T Consensus         2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~   37 (287)
T TIGR00174         2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYK   37 (287)
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCcEEEechhheee
Confidence            689999999999999999999999888887655543

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins

Probab=96.35  E-value=0.0064  Score=58.28  Aligned_cols=111  Identities=20%  Similarity=0.224  Sum_probs=56.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS  329 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~  329 (496)
                      ..++|.|+-|+|||++.+.|+.+    ++.-+.....      .......    ....  -|+.+||++.+...      
T Consensus        53 ~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~~------~kd~~~~----l~~~--~iveldEl~~~~k~------  110 (198)
T PF05272_consen   53 TVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDFD------DKDFLEQ----LQGK--WIVELDELDGLSKK------  110 (198)
T ss_pred             eeeeEecCCcccHHHHHHHHhHH----hccCccccCC------CcHHHHH----HHHh--HheeHHHHhhcchh------
Confidence            46889999999999999999665    2211111110      0111111    1111  48999999987522      


Q ss_pred             hhHHhhhhhhhhhhhcc-----CccccCcEEEEEeccCCcccc-cHHHHHHhhhhhcccC
Q 010975          330 EHEASRRLKTELLIQMD-----GLTQSDELVFVLAATNLPWEL-DAAMLRRLEKRILVPL  383 (496)
Q Consensus       330 ~~~~~~~i~~~Ll~~ld-----~~~~~~~~viVIatTn~p~~L-d~aL~rRf~~~I~~~~  383 (496)
                      +.+..+.+++.--..+.     .....+...++|+|||..+-| |+.=-|||-. +.+..
T Consensus       111 ~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~-v~v~~  169 (198)
T PF05272_consen  111 DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWP-VEVSK  169 (198)
T ss_pred             hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEE-EEEcC
Confidence            11112222211111111     111234456789999988643 3334468733 44433

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=96.35  E-value=0.0028  Score=58.19  Aligned_cols=29  Identities=38%  Similarity=0.652  Sum_probs=26.2

Q ss_pred             eeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          252 ILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      |.++|++|+|||++|+.+++.++.+++..
T Consensus         3 I~i~G~~GSGKstia~~la~~lg~~~~~~   31 (171)
T TIGR02173         3 ITISGPPGSGKTTVAKILAEKLSLKLISA   31 (171)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence            78999999999999999999999887654

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.35  E-value=0.0025  Score=57.19  Aligned_cols=29  Identities=28%  Similarity=0.254  Sum_probs=25.4

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhhcce
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATECKTT  276 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l~~~  276 (496)
                      +..-++|.|+.|+|||++++.+++.++..
T Consensus        21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150        21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            34568999999999999999999999754

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=96.34  E-value=0.0031  Score=65.45  Aligned_cols=70  Identities=24%  Similarity=0.395  Sum_probs=45.5

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhhcc--eeeeeec-ccccc--------cc----cCChHHHHHHHHHHhhhcCCcce
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISA-SSVVS--------KW----RGDSEKLIKVLFELARHHAPSTI  312 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l~~--~~i~v~~-s~l~~--------~~----~G~~e~~l~~lf~~a~~~~p~IL  312 (496)
                      ...++++.||+|+||||++++++..+..  +++.+.- .++.-        .+    .+...-....++..+....|..|
T Consensus       161 ~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~I  240 (344)
T PRK13851        161 GRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRI  240 (344)
T ss_pred             cCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeE
Confidence            3468999999999999999999998732  3332211 11110        00    11112234567777777899999


Q ss_pred             ehhhH
Q 010975          313 FLDEI  317 (496)
Q Consensus       313 fIDEI  317 (496)
                      ++.|+
T Consensus       241 ivGEi  245 (344)
T PRK13851        241 LLGEM  245 (344)
T ss_pred             EEEee
Confidence            99999

>smart00487 DEXDc DEAD-like helicases superfamily

Probab=96.33  E-value=0.011  Score=54.14  Aligned_cols=24  Identities=25%  Similarity=0.486  Sum_probs=18.6

Q ss_pred             ceeeeeCCCCChhHH-HHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTM-LAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~-LAralA~~l  273 (496)
                      +++++.||+|+|||+ ++..+...+
T Consensus        25 ~~~~i~~~~GsGKT~~~~~~~~~~~   49 (201)
T smart00487       25 RDVILAAPTGSGKTLAALLPALEAL   49 (201)
T ss_pred             CcEEEECCCCCchhHHHHHHHHHHh
Confidence            478999999999999 555555544

>PRK14529 adenylate kinase; Provisional

Probab=96.32  E-value=0.0046  Score=60.35  Aligned_cols=36  Identities=25%  Similarity=0.524  Sum_probs=28.7

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK  288 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~  288 (496)
                      .++|.||||+||||+++.|++.++.+.+  +.+++...
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdllr~   37 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIFRE   37 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhhhh
Confidence            4789999999999999999999986654  44555443

>PLN02840 tRNA dimethylallyltransferase

Probab=96.32  E-value=0.0017  Score=68.77  Aligned_cols=37  Identities=30%  Similarity=0.443  Sum_probs=31.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV  286 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~  286 (496)
                      .-++|.||+|+|||+++..||..++.+++..+...+.
T Consensus        22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvY   58 (421)
T PLN02840         22 KVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVY   58 (421)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHCCCCeEecccccee
Confidence            3588999999999999999999999888877764443

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=96.31  E-value=0.0032  Score=63.67  Aligned_cols=30  Identities=40%  Similarity=0.536  Sum_probs=24.9

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh-cceeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC-KTTFFN  279 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l-~~~~i~  279 (496)
                      .-+++.|+||+||||+|+.+++.+ +..++.
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~   33 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVN   33 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEe
Confidence            458899999999999999999998 544443

>PLN02165 adenylate isopentenyltransferase

Probab=96.31  E-value=0.0019  Score=66.46  Aligned_cols=34  Identities=26%  Similarity=0.460  Sum_probs=29.2

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS  283 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s  283 (496)
                      ..++|.||+|+|||+|+..||..++..++..+.-
T Consensus        44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~   77 (334)
T PLN02165         44 KVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM   77 (334)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence            4689999999999999999999998877766543

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.31  E-value=0.0045  Score=58.68  Aligned_cols=25  Identities=24%  Similarity=0.287  Sum_probs=22.4

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ++-++|.||+|+|||+|++.+.+..
T Consensus         4 ~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          4 PKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhcC
Confidence            4568999999999999999998876

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=96.30  E-value=0.0033  Score=57.25  Aligned_cols=32  Identities=25%  Similarity=0.484  Sum_probs=26.4

Q ss_pred             eeeeCCCCChhHHHHHHHHhhh---cceeeeeecc
Q 010975          252 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS  283 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s  283 (496)
                      ++++|+||+|||++|+.++..+   +...+.++..
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d   36 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGD   36 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCH
Confidence            6899999999999999999988   5555666543

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=96.29  E-value=0.0096  Score=58.10  Aligned_cols=37  Identities=27%  Similarity=0.336  Sum_probs=28.7

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeec
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA  282 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~  282 (496)
                      +.+..-++|.|+||+|||+++..++...    +.+++.++.
T Consensus        10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~   50 (242)
T cd00984          10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL   50 (242)
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence            4455679999999999999999887755    667666653

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=96.28  E-value=0.015  Score=53.76  Aligned_cols=22  Identities=32%  Similarity=0.418  Sum_probs=19.5

Q ss_pred             eeeeCCCCChhHHHHHHHHhhh
Q 010975          252 ILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.+|+++|.|||++|-++|-+.
T Consensus         5 i~vy~g~G~Gkt~~a~g~~~ra   26 (159)
T cd00561           5 IQVYTGNGKGKTTAALGLALRA   26 (159)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6788999999999999998766

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.28  E-value=0.0037  Score=58.87  Aligned_cols=29  Identities=38%  Similarity=0.578  Sum_probs=25.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFF  278 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i  278 (496)
                      ..++|.||+|+||||+++.++...+.+++
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~   31 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQREQTQLL   31 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence            46889999999999999999998876544

>PRK05541 adenylylsulfate kinase; Provisional

Probab=96.27  E-value=0.004  Score=57.97  Aligned_cols=27  Identities=37%  Similarity=0.377  Sum_probs=24.1

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      ++.-++|.|+||+||||+++.++..+.
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~~l~   32 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYERLK   32 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            345789999999999999999999885

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=96.26  E-value=0.0085  Score=61.49  Aligned_cols=40  Identities=18%  Similarity=0.236  Sum_probs=30.4

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeeccc
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS  284 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s~  284 (496)
                      +++...-++|+||||+|||+++..++...         +..+++++..+
T Consensus        98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~  146 (317)
T PRK04301         98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG  146 (317)
T ss_pred             CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence            35555668999999999999999998653         34677776544

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=96.26  E-value=0.0076  Score=56.56  Aligned_cols=26  Identities=42%  Similarity=0.575  Sum_probs=22.1

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ...-++|+||||+|||+++..++..+
T Consensus        31 ~g~l~~i~g~~g~GKT~~~~~l~~~~   56 (193)
T PF13481_consen   31 RGELTLIAGPPGSGKTTLALQLAAAL   56 (193)
T ss_dssp             TTSEEEEEECSTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34458999999999999999988866

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=96.25  E-value=0.0022  Score=65.54  Aligned_cols=36  Identities=31%  Similarity=0.459  Sum_probs=30.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV  285 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l  285 (496)
                      +-+++.||+|+|||++|..+|++++..++..+.-.+
T Consensus         5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qv   40 (307)
T PRK00091          5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSMQV   40 (307)
T ss_pred             eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccce
Confidence            468999999999999999999999988777765433

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=96.23  E-value=0.0089  Score=61.33  Aligned_cols=40  Identities=18%  Similarity=0.185  Sum_probs=29.4

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeeccc
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS  284 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s~  284 (496)
                      ++....-+.|+||||+|||+++..++-..         +..+++++..+
T Consensus        92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~  140 (313)
T TIGR02238        92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG  140 (313)
T ss_pred             CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence            35555668899999999999999877422         45677776543

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB

Probab=96.23  E-value=0.0047  Score=68.42  Aligned_cols=94  Identities=18%  Similarity=0.191  Sum_probs=57.9

Q ss_pred             CCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc---eeeeeecc-cc--
Q 010975          212 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---TFFNISAS-SV--  285 (496)
Q Consensus       212 ~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~---~~i~v~~s-~l--  285 (496)
                      ..+++++.-.+...+.+.+.+..+             ...+|++||+|+||||+..++.+.++.   +++.+--. +.  
T Consensus       292 ~~~l~~lg~~~~~~~~l~~~~~~~-------------~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~  358 (564)
T TIGR02538       292 QLDIDKLGFEPDQKALFLEAIHKP-------------QGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINL  358 (564)
T ss_pred             cCCHHHcCCCHHHHHHHHHHHHhc-------------CCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecC
Confidence            345777777777777777766432             134789999999999999888887742   33332111 11  


Q ss_pred             ---ccccc-CChHHHHHHHHHHhhhcCCcceehhhHH
Q 010975          286 ---VSKWR-GDSEKLIKVLFELARHHAPSTIFLDEID  318 (496)
Q Consensus       286 ---~~~~~-G~~e~~l~~lf~~a~~~~p~ILfIDEID  318 (496)
                         ....+ ..........+..+-...|.||++.|+-
T Consensus       359 ~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR  395 (564)
T TIGR02538       359 PGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR  395 (564)
T ss_pred             CCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence               00000 1111224455666667889999999993

This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.23  E-value=0.0089  Score=66.41  Aligned_cols=28  Identities=29%  Similarity=0.520  Sum_probs=24.6

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ++|+..+-|.||+|.||||+|..+-+-.
T Consensus       491 i~pGe~vALVGPSGsGKSTiasLL~rfY  518 (716)
T KOG0058|consen  491 IRPGEVVALVGPSGSGKSTIASLLLRFY  518 (716)
T ss_pred             eCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            5677789999999999999999998855

>PRK14526 adenylate kinase; Provisional

Probab=96.22  E-value=0.0038  Score=60.45  Aligned_cols=34  Identities=32%  Similarity=0.639  Sum_probs=27.3

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV  286 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~  286 (496)
                      .++|.||||+||||+++.+|..++.+.  ++.+++.
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~~~~~--is~G~ll   35 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNELNYYH--ISTGDLF   35 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCce--eecChHH
Confidence            478999999999999999999987655  4444443

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=96.22  E-value=0.005  Score=63.52  Aligned_cols=34  Identities=29%  Similarity=0.278  Sum_probs=29.0

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS  283 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s  283 (496)
                      +.++|.|+||+|||||++.++..++.+++.-.+.
T Consensus       163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R  196 (325)
T TIGR01526       163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAR  196 (325)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhH
Confidence            4689999999999999999999998887654443

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=96.21  E-value=0.0036  Score=58.43  Aligned_cols=23  Identities=52%  Similarity=0.804  Sum_probs=20.6

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +++|+|+||+||||+++.+.+.+
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHh
Confidence            58999999999999999999988

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=96.20  E-value=0.01  Score=61.63  Aligned_cols=39  Identities=21%  Similarity=0.148  Sum_probs=28.5

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeecc
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISAS  283 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s  283 (496)
                      ++....-..|+||||||||+++..++-..         +..+++++..
T Consensus       122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE  169 (344)
T PLN03187        122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTE  169 (344)
T ss_pred             CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcC
Confidence            34555568899999999999999887422         3466777653

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=96.20  E-value=0.011  Score=60.26  Aligned_cols=40  Identities=20%  Similarity=0.231  Sum_probs=30.4

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeeccc
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS  284 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s~  284 (496)
                      +++...-++++||||+|||+++-.+|...         +...++++..+
T Consensus        91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~  139 (310)
T TIGR02236        91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN  139 (310)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence            34555668999999999999999998653         33677777654

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=96.20  E-value=0.0047  Score=62.01  Aligned_cols=70  Identities=27%  Similarity=0.302  Sum_probs=37.7

Q ss_pred             eeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccc---ccc-cCChHHHHHHHH----HHhhhcCCcceehhhHHHH
Q 010975          252 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV---SKW-RGDSEKLIKVLF----ELARHHAPSTIFLDEIDAI  320 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~---~~~-~G~~e~~l~~lf----~~a~~~~p~ILfIDEID~L  320 (496)
                      ++|+|-||+|||++|+.|+..+   +..++.++...+.   ..| ....++..+..+    ..+-.. ..|+++|+...+
T Consensus         4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~-~~iVI~Dd~nYi   82 (270)
T PF08433_consen    4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSK-DTIVILDDNNYI   82 (270)
T ss_dssp             EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT--SEEEE-S---S
T ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhcc-CeEEEEeCCchH
Confidence            7899999999999999999976   4566666644333   112 123355555433    332222 369999988776


Q ss_pred             Hh
Q 010975          321 IS  322 (496)
Q Consensus       321 ~~  322 (496)
                      -+
T Consensus        83 Kg   84 (270)
T PF08433_consen   83 KG   84 (270)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.18  E-value=0.03  Score=61.04  Aligned_cols=27  Identities=33%  Similarity=0.395  Sum_probs=22.9

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .....+.|+||+|+||||++..|+..+
T Consensus       348 ~~G~vIaLVGPtGvGKTTtaakLAa~l  374 (559)
T PRK12727        348 ERGGVIALVGPTGAGKTTTIAKLAQRF  374 (559)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            344678999999999999999998765

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=96.15  E-value=0.031  Score=51.74  Aligned_cols=133  Identities=17%  Similarity=0.187  Sum_probs=68.3

Q ss_pred             eCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHh
Q 010975          255 FGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEAS  334 (496)
Q Consensus       255 ~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~  334 (496)
                      .+.+||||||++.+|++-++- +-.+.-.++.++   ...+.++.+++........++|.|==......|          
T Consensus         5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~~reR----------   70 (168)
T PF08303_consen    5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQKRER----------   70 (168)
T ss_pred             ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCchHHHH----------
Confidence            578999999999999999873 333333344333   244555566666643444688888443333222          


Q ss_pred             hhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHH--------Hhhhh--hcccCCCHHHHHHHHHhhCCCCC
Q 010975          335 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--------RLEKR--ILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       335 ~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~r--------Rf~~~--I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                      +++.+.+-.....+......+-+||-.-..+.-.+.+.+        |=+.+  |.....+...-..|++.++....
T Consensus        71 ~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rfe  147 (168)
T PF08303_consen   71 KQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRFE  147 (168)
T ss_pred             HHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhcC
Confidence            122222222111111122235555554333322223333        22222  33333456677778888876554

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>PRK10867 signal recognition particle protein; Provisional

Probab=96.14  E-value=0.018  Score=61.68  Aligned_cols=70  Identities=23%  Similarity=0.309  Sum_probs=43.2

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeeccccccc----------------c---c-CChHHHHHHHHHH
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK----------------W---R-GDSEKLIKVLFEL  303 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~s~l~~~----------------~---~-G~~e~~l~~lf~~  303 (496)
                      ++.-++++||+|+||||++..+|..+    |..+..+++......                +   . ..........+..
T Consensus        99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~  178 (433)
T PRK10867         99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE  178 (433)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence            45678999999999999888887755    455666665422211                0   0 1223333445555


Q ss_pred             hhhcCCcceehhhH
Q 010975          304 ARHHAPSTIFLDEI  317 (496)
Q Consensus       304 a~~~~p~ILfIDEI  317 (496)
                      ++.....+++||=.
T Consensus       179 a~~~~~DvVIIDTa  192 (433)
T PRK10867        179 AKENGYDVVIVDTA  192 (433)
T ss_pred             HHhcCCCEEEEeCC
Confidence            55555678888855

>PRK00889 adenylylsulfate kinase; Provisional

Probab=96.13  E-value=0.0058  Score=56.80  Aligned_cols=35  Identities=23%  Similarity=0.273  Sum_probs=27.6

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecc
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS  283 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s  283 (496)
                      +.-++|.|+||+||||+++.++..+   +..+..++..
T Consensus         4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D   41 (175)
T PRK00889          4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD   41 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence            3568999999999999999999988   3345555543

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=96.13  E-value=0.044  Score=58.47  Aligned_cols=35  Identities=23%  Similarity=0.190  Sum_probs=28.2

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      ++.-++|+|++|+||||++..+|..+   |..+.-+++
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~  136 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA  136 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence            34678999999999999999999877   556666655

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=96.13  E-value=0.013  Score=56.48  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=19.9

Q ss_pred             ceeeeeCCCCChhHHHHHHHHh
Q 010975          250 KGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~  271 (496)
                      +-++|+||.|+|||++.+.++.
T Consensus        30 ~~~~l~G~n~~GKstll~~i~~   51 (204)
T cd03282          30 RFHIITGPNMSGKSTYLKQIAL   51 (204)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999974

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.12  E-value=0.012  Score=53.65  Aligned_cols=27  Identities=33%  Similarity=0.485  Sum_probs=23.9

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+...+.|.||+|+|||+++++++..+
T Consensus        23 ~~g~~~~i~G~nGsGKStll~~l~g~~   49 (157)
T cd00267          23 KAGEIVALVGPNGSGKSTLLRAIAGLL   49 (157)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            445679999999999999999999976

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00959 ffh signal recognition particle protein

Probab=96.12  E-value=0.043  Score=58.70  Aligned_cols=36  Identities=25%  Similarity=0.311  Sum_probs=28.2

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeecc
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISAS  283 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~s  283 (496)
                      ++.-+++.|++|+||||++..+|..+    |.++..+++.
T Consensus        98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D  137 (428)
T TIGR00959        98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD  137 (428)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence            35679999999999999988888764    4566666664

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=96.08  E-value=0.016  Score=53.43  Aligned_cols=24  Identities=25%  Similarity=0.499  Sum_probs=20.9

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +..+++||.|+|||++.++++-.+
T Consensus        22 ~~~~i~G~NgsGKS~~l~~i~~~~   45 (162)
T cd03227          22 SLTIITGPNGSGKSTILDAIGLAL   45 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            578999999999999999986544

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>PLN02199 shikimate kinase

Probab=96.08  E-value=0.0048  Score=62.43  Aligned_cols=32  Identities=31%  Similarity=0.523  Sum_probs=29.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      ++|+|.|.+|+|||++++.+|+.+|.+|+..+
T Consensus       103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD  134 (303)
T PLN02199        103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD  134 (303)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence            68999999999999999999999999998765

>PLN02748 tRNA dimethylallyltransferase

Probab=96.06  E-value=0.0027  Score=68.33  Aligned_cols=37  Identities=30%  Similarity=0.516  Sum_probs=31.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV  286 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~  286 (496)
                      .-++|.||+|+|||+||..+|..++..++..+...+.
T Consensus        23 ~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVY   59 (468)
T PLN02748         23 KVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVY   59 (468)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheee
Confidence            3589999999999999999999999888877754443

>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=96.05  E-value=0.009  Score=59.96  Aligned_cols=86  Identities=22%  Similarity=0.266  Sum_probs=51.7

Q ss_pred             hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHH
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKL  296 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~  296 (496)
                      +++=-+++.+.+..+.....          .+..|+||.|.+|+||+++++..|...+..++.+..+.-.+  ..+....
T Consensus         9 ~lVlf~~ai~hi~ri~RvL~----------~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~d   76 (268)
T PF12780_consen    9 NLVLFDEAIEHIARISRVLS----------QPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKED   76 (268)
T ss_dssp             -----HHHHHHHHHHHHHHC----------STTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHH
T ss_pred             ceeeHHHHHHHHHHHHHHHc----------CCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHH
Confidence            34555555655555432211          23468999999999999999999999999999887643211  2234556


Q ss_pred             HHHHHHHhhh-cCCcceeh
Q 010975          297 IKVLFELARH-HAPSTIFL  314 (496)
Q Consensus       297 l~~lf~~a~~-~~p~ILfI  314 (496)
                      ++.++.+|.. .+|.++++
T Consensus        77 Lk~~~~~ag~~~~~~vfll   95 (268)
T PF12780_consen   77 LKKALQKAGIKGKPTVFLL   95 (268)
T ss_dssp             HHHHHHHHHCS-S-EEEEE
T ss_pred             HHHHHHHHhccCCCeEEEe
Confidence            7777666653 44555554

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=96.03  E-value=0.024  Score=55.57  Aligned_cols=21  Identities=38%  Similarity=0.482  Sum_probs=18.9

Q ss_pred             eeeeCCCCChhHHHHHHHHhh
Q 010975          252 ILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~  272 (496)
                      -+|.||||+|||+|+..+|..
T Consensus         4 ~ll~g~~G~GKS~lal~la~~   24 (239)
T cd01125           4 SALVAPGGTGKSSLLLVLALA   24 (239)
T ss_pred             eEEEcCCCCCHHHHHHHHHHH
Confidence            589999999999999999864

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=96.01  E-value=0.003  Score=64.22  Aligned_cols=39  Identities=31%  Similarity=0.409  Sum_probs=34.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK  288 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~  288 (496)
                      +-++|+||+++|||.+|-.+|+++|.+++.++...+...
T Consensus         4 ~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~   42 (308)
T COG0324           4 KLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRG   42 (308)
T ss_pred             cEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCC
Confidence            568999999999999999999999999999987665443

>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain

Probab=96.00  E-value=0.0053  Score=62.59  Aligned_cols=55  Identities=13%  Similarity=0.134  Sum_probs=40.1

Q ss_pred             chHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          221 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       221 ~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      .++.++.+.+++...+...      ....+-++|+|+.|+|||++.+.+...+|.....+.
T Consensus        54 d~~~~~~l~~~lg~~L~~~------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~  108 (304)
T TIGR01613        54 DNELIEYLQRVIGYSLTGN------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAV  108 (304)
T ss_pred             CHHHHHHHHHHHhHHhcCC------CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCC
Confidence            4457888888876655432      123357999999999999999999998886654433

This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=96.00  E-value=0.0074  Score=63.96  Aligned_cols=29  Identities=24%  Similarity=0.367  Sum_probs=26.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFF  278 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i  278 (496)
                      +.|+|.|++|||||||+++||..+|...+
T Consensus       220 ~~IvI~G~~gsGKTTL~~~La~~~g~~~v  248 (399)
T PRK08099        220 RTVAILGGESSGKSTLVNKLANIFNTTSA  248 (399)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence            57999999999999999999999887654

>PRK12608 transcription termination factor Rho; Provisional

Probab=95.99  E-value=0.011  Score=61.69  Aligned_cols=24  Identities=33%  Similarity=0.588  Sum_probs=22.0

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ...+|+||||||||++++.+++.+
T Consensus       134 QR~LIvG~pGtGKTTLl~~la~~i  157 (380)
T PRK12608        134 QRGLIVAPPRAGKTVLLQQIAAAV  157 (380)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH
Confidence            458999999999999999999977

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=95.99  E-value=0.0081  Score=57.87  Aligned_cols=38  Identities=32%  Similarity=0.463  Sum_probs=29.1

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK  288 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~  288 (496)
                      -++|+||+|||||.+|-++|+.+|.+++..+.-....+
T Consensus         3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~   40 (233)
T PF01745_consen    3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPE   40 (233)
T ss_dssp             EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GG
T ss_pred             EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccc
Confidence            46899999999999999999999999999987665544

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=95.98  E-value=0.0071  Score=60.09  Aligned_cols=41  Identities=32%  Similarity=0.415  Sum_probs=33.0

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccc
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV  285 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l  285 (496)
                      +++..+.+|++|+||||||+++..++.+.   |.+++.++..+.
T Consensus        19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~   62 (260)
T COG0467          19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES   62 (260)
T ss_pred             CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence            35566789999999999999999998866   677888876543

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=95.97  E-value=0.0065  Score=58.16  Aligned_cols=28  Identities=25%  Similarity=0.313  Sum_probs=25.2

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhccee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTF  277 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~  277 (496)
                      .-+++.|+||+||||+|+.+|.+++..+
T Consensus         4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~   31 (197)
T PRK12339          4 TIHFIGGIPGVGKTSISGYIARHRAIDI   31 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence            4689999999999999999999988754

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=95.97  E-value=0.0048  Score=57.46  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=21.8

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhc
Q 010975          251 GILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      -++|.||||+||||++++|+..++
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            478999999999999999999874

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=95.96  E-value=0.018  Score=62.70  Aligned_cols=39  Identities=23%  Similarity=0.252  Sum_probs=29.4

Q ss_pred             cccCccceeeeeCCCCChhHHHHHHHHhh----hcceeeeeec
Q 010975          244 GLLSPWKGILLFGPPGTGKTMLAKAVATE----CKTTFFNISA  282 (496)
Q Consensus       244 ~~~~~~~~vLL~GPpGtGKT~LAralA~~----l~~~~i~v~~  282 (496)
                      .++++.+.+|+.||||||||++|..++.+    .|.+.++++.
T Consensus        16 GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~   58 (484)
T TIGR02655        16 GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF   58 (484)
T ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence            34566788999999999999999998553    2456665554

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=95.94  E-value=0.022  Score=55.50  Aligned_cols=23  Identities=26%  Similarity=0.265  Sum_probs=20.8

Q ss_pred             cceeeeeCCCCChhHHHHHHHHh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~  271 (496)
                      ...++|.||.|+|||++.+.++.
T Consensus        31 g~~~~itG~N~~GKStll~~i~~   53 (222)
T cd03287          31 GYCQIITGPNMGGKSSYIRQVAL   53 (222)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999988

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PTZ00035 Rad51 protein; Provisional

Probab=95.91  E-value=0.018  Score=59.71  Aligned_cols=39  Identities=26%  Similarity=0.331  Sum_probs=28.3

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeecc
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISAS  283 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s  283 (496)
                      ++....-+.|+||||+|||+++..++...         +..+++++..
T Consensus       114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE  161 (337)
T PTZ00035        114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTE  161 (337)
T ss_pred             CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEcc
Confidence            34555668899999999999999987532         3455666654

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.89  E-value=0.033  Score=60.32  Aligned_cols=25  Identities=36%  Similarity=0.598  Sum_probs=22.1

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.-++|.||+|+||||++..||..+
T Consensus       256 g~Vi~LvGpnGvGKTTTiaKLA~~~  280 (484)
T PRK06995        256 GGVFALMGPTGVGKTTTTAKLAARC  280 (484)
T ss_pred             CcEEEEECCCCccHHHHHHHHHHHH
Confidence            3568899999999999999999866

>PRK04132 replication factor C small subunit; Provisional

Probab=95.89  E-value=0.0047  Score=70.81  Aligned_cols=49  Identities=27%  Similarity=0.397  Sum_probs=41.1

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHH
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTML  265 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~L  265 (496)
                      .+.+++++.+|+|++|++.+++.|+..+...            ...|++|+||||+||+..
T Consensus         8 ~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~------------~i~h~l~~g~~g~~~cl~   56 (846)
T PRK04132          8 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG------------SMPHLLFAGPPGVGKCLT   56 (846)
T ss_pred             cHHHhhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEECCCCCCcccc
Confidence            5778889999999999999999999988642            224688999999999743

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=95.87  E-value=0.01  Score=55.11  Aligned_cols=28  Identities=29%  Similarity=0.557  Sum_probs=24.3

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.+...+.|.||+|+|||||.+.++...
T Consensus        25 i~~G~~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            3455679999999999999999999976

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.85  E-value=0.035  Score=63.03  Aligned_cols=25  Identities=36%  Similarity=0.602  Sum_probs=21.9

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.-++|.||+|+||||++..||..+
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~~~  209 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAARC  209 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHhhH
Confidence            4568999999999999999999766

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=95.85  E-value=0.015  Score=59.68  Aligned_cols=40  Identities=25%  Similarity=0.312  Sum_probs=29.0

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeeccc
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS  284 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s~  284 (496)
                      ++.+..-+.++||||+|||+++..++...         +...++++..+
T Consensus        92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~  140 (316)
T TIGR02239        92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG  140 (316)
T ss_pred             CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence            34555668899999999999999987522         13556666544

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=95.85  E-value=0.0087  Score=55.94  Aligned_cols=38  Identities=21%  Similarity=0.301  Sum_probs=33.0

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccc
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV  286 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~  286 (496)
                      +..+.|+|.+|+||||+|.++.+.+   |...+.+++..+.
T Consensus        23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR   63 (197)
T COG0529          23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR   63 (197)
T ss_pred             CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh
Confidence            3468899999999999999999988   8889999886654

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.83  E-value=0.046  Score=58.24  Aligned_cols=26  Identities=31%  Similarity=0.402  Sum_probs=22.3

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+.-+.|.||+|+||||++..||..+
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~~  215 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAARA  215 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            44569999999999999999998754

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA

Probab=95.83  E-value=0.0075  Score=68.94  Aligned_cols=71  Identities=18%  Similarity=0.204  Sum_probs=41.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccc----cccCChHHHHHHHHHH-hh----hcCCcceehhhH
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----KWRGDSEKLIKVLFEL-AR----HHAPSTIFLDEI  317 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~----~~~G~~e~~l~~lf~~-a~----~~~p~ILfIDEI  317 (496)
                      +-++|.|+||||||++++++...+   |..++-+..+....    ...|.....+..+... ..    .....+|+|||+
T Consensus       369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa  448 (744)
T TIGR02768       369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA  448 (744)
T ss_pred             CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence            457899999999999999997655   55666554433221    1112222223333211 11    123469999999


Q ss_pred             HHH
Q 010975          318 DAI  320 (496)
Q Consensus       318 D~L  320 (496)
                      -.+
T Consensus       449 sMv  451 (744)
T TIGR02768       449 GMV  451 (744)
T ss_pred             ccC
Confidence            544

This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=95.79  E-value=0.01  Score=56.85  Aligned_cols=34  Identities=26%  Similarity=0.276  Sum_probs=26.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc-ceeeeeecc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK-TTFFNISAS  283 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~-~~~i~v~~s  283 (496)
                      .-|.|.|++|+|||||++.|+..++ ..+..++..
T Consensus         7 ~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D   41 (209)
T PRK05480          7 IIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQD   41 (209)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCC
Confidence            4688999999999999999999983 334444443

>PRK12338 hypothetical protein; Provisional

Probab=95.78  E-value=0.0083  Score=61.48  Aligned_cols=30  Identities=23%  Similarity=0.256  Sum_probs=26.4

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFF  278 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i  278 (496)
                      |.-+++.|+||+||||+|+.+|..+|...+
T Consensus         4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~   33 (319)
T PRK12338          4 PYVILIGSASGIGKSTIASELARTLNIKHL   33 (319)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence            356899999999999999999999987654

>PLN02459 probable adenylate kinase

Probab=95.76  E-value=0.0084  Score=59.77  Aligned_cols=34  Identities=24%  Similarity=0.408  Sum_probs=27.4

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV  286 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~  286 (496)
                      .++|.||||+||||+++.+|+.++...  ++.+++.
T Consensus        31 ~ii~~G~PGsGK~T~a~~la~~~~~~~--is~gdll   64 (261)
T PLN02459         31 NWVFLGCPGVGKGTYASRLSKLLGVPH--IATGDLV   64 (261)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcE--EeCcHHH
Confidence            488899999999999999999987544  4445543

>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=95.74  E-value=0.026  Score=54.35  Aligned_cols=118  Identities=23%  Similarity=0.315  Sum_probs=69.6

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec----------------------------------cccccc
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA----------------------------------SSVVSK  288 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~----------------------------------s~l~~~  288 (496)
                      ++.+.=+++.|+.|||||.|.+.++.-+   +....+++.                                  ..+. .
T Consensus        25 iP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~-~  103 (235)
T COG2874          25 IPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVN-W  103 (235)
T ss_pred             CccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccc-c
Confidence            4444558899999999999999998744   333333221                                  1000 0


Q ss_pred             ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccccc
Q 010975          289 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD  368 (496)
Q Consensus       289 ~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld  368 (496)
                      ..+...+.+..+++..+.....|++||-+..+....     +    ......++..+..+...+. +++  -|-+|..++
T Consensus       104 ~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-----~----~~~vl~fm~~~r~l~d~gK-vIi--lTvhp~~l~  171 (235)
T COG2874         104 GRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-----S----EDAVLNFMTFLRKLSDLGK-VII--LTVHPSALD  171 (235)
T ss_pred             ChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-----c----HHHHHHHHHHHHHHHhCCC-EEE--EEeChhhcC
Confidence            112344556666766676777899999998876441     1    1112233344433333443 433  356677889


Q ss_pred             HHHHHHhh
Q 010975          369 AAMLRRLE  376 (496)
Q Consensus       369 ~aL~rRf~  376 (496)
                      +++.-|+.
T Consensus       172 e~~~~rir  179 (235)
T COG2874         172 EDVLTRIR  179 (235)
T ss_pred             HHHHHHHH
Confidence            88887764

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=95.73  E-value=0.014  Score=54.99  Aligned_cols=24  Identities=42%  Similarity=0.585  Sum_probs=21.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .-++|.||+|+||||+++++-...
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            458899999999999999998877

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=95.72  E-value=0.015  Score=62.68  Aligned_cols=69  Identities=19%  Similarity=0.351  Sum_probs=43.3

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh--------cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLD  315 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l--------~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfID  315 (496)
                      .+||--+-+.||||||||||++++.+.+        ..|+..+++..-.-.+. +....+.++++.|+-..-.+|+||
T Consensus        66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTfl-Ecp~Dl~~miDvaKIaDLVlLlId  142 (1077)
T COG5192          66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFL-ECPSDLHQMIDVAKIADLVLLLID  142 (1077)
T ss_pred             CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEE-eChHHHHHHHhHHHhhheeEEEec
Confidence            3455556689999999999999998876        23333333321111111 344667777777776555577777

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=95.71  E-value=0.03  Score=61.25  Aligned_cols=113  Identities=23%  Similarity=0.216  Sum_probs=0.0

Q ss_pred             cccccccCccceeeeeCCCCChhHHHHHHHHhhhcce------------------------------------eeeeecc
Q 010975          240 KYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------------------------------FFNISAS  283 (496)
Q Consensus       240 ~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~------------------------------------~i~v~~s  283 (496)
                      +....++++...+||+|+||+|||+++..++.+.-..                                    ++.++..
T Consensus        22 ~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~  101 (509)
T PRK09302         22 DITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDAS  101 (509)
T ss_pred             HhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecC


Q ss_pred             cccccccC----ChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEe
Q 010975          284 SVVSKWRG----DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA  359 (496)
Q Consensus       284 ~l~~~~~G----~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIa  359 (496)
                      .....+..    ..+..+..+.+.+...++..++||-+..+.......       ..+...+...+..+...+-.++++.
T Consensus       102 ~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d~~-------~~~r~~l~~L~~~Lk~~g~TvLlt~  174 (509)
T PRK09302        102 PDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSNE-------AVVRRELRRLFAWLKQKGVTAVITG  174 (509)
T ss_pred             cccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhccCH-------HHHHHHHHHHHHHHHhCCCEEEEEE

>PRK10875 recD exonuclease V subunit alpha; Provisional

Probab=95.69  E-value=0.025  Score=63.15  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=20.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +-.+|.|+|||||||+++.+...+
T Consensus       168 ~~~vItGgpGTGKTt~v~~ll~~l  191 (615)
T PRK10875        168 RISVISGGPGTGKTTTVAKLLAAL  191 (615)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHH
Confidence            458999999999999998887655

>PRK13975 thymidylate kinase; Provisional

Probab=95.69  E-value=0.0084  Score=56.56  Aligned_cols=28  Identities=36%  Similarity=0.411  Sum_probs=24.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhccee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTF  277 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~  277 (496)
                      .-++|.|++|+||||+++.+++.++..+
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~~   30 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLNAFW   30 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            3588999999999999999999998543

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=95.68  E-value=0.022  Score=59.16  Aligned_cols=39  Identities=21%  Similarity=0.322  Sum_probs=28.4

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeeccc
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS  284 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s~  284 (496)
                      +.+..-+.++|+||+|||+++..+|...         +.++++++..+
T Consensus       120 ~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~  167 (342)
T PLN03186        120 IETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEG  167 (342)
T ss_pred             CcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCC
Confidence            4555568899999999999999887432         23577776544

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=95.68  E-value=0.0095  Score=56.00  Aligned_cols=35  Identities=29%  Similarity=0.413  Sum_probs=27.6

Q ss_pred             eeeeCCCCChhHHHHHHHHhhhc---ceeeeeeccccc
Q 010975          252 ILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVV  286 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~s~l~  286 (496)
                      |.+.|+||+||||+|+.++..++   .++..++..++.
T Consensus         2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~   39 (179)
T cd02028           2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY   39 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence            57899999999999999999873   455666555543

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=95.67  E-value=0.009  Score=56.73  Aligned_cols=30  Identities=23%  Similarity=0.263  Sum_probs=24.3

Q ss_pred             eeeeCCCCChhHHHHHHHHhhh-cceeeeee
Q 010975          252 ILLFGPPGTGKTMLAKAVATEC-KTTFFNIS  281 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l-~~~~i~v~  281 (496)
                      |.+.|+||+||||+|+.++..+ +..++.++
T Consensus         2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~D   32 (187)
T cd02024           2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQD   32 (187)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeEEccc
Confidence            5688999999999999999998 45454443

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK10263 DNA translocase FtsK; Provisional

Probab=95.67  E-value=0.041  Score=65.16  Aligned_cols=75  Identities=15%  Similarity=0.325  Sum_probs=48.4

Q ss_pred             cceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc--cccHHHHHHhhhhhcccCCCHH
Q 010975          310 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRILVPLPDTE  387 (496)
Q Consensus       310 ~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~--~Ld~aL~rRf~~~I~~~~P~~e  387 (496)
                      -||+|||+..|.....         +.+ ..++..|-. ..+.-.|.+|.+|.+|.  .+...++.-|..+|.+..-+..
T Consensus      1142 IVVIIDE~AdLm~~~~---------kev-E~lI~rLAq-kGRAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~ 1210 (1355)
T PRK10263       1142 IVVLVDEFADLMMTVG---------KKV-EELIARLAQ-KARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKI 1210 (1355)
T ss_pred             EEEEEcChHHHHhhhh---------HHH-HHHHHHHHH-HhhhcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHH
Confidence            3899999988864311         111 122222211 12334467778888885  5777788889888999999888


Q ss_pred             HHHHHHHh
Q 010975          388 ARRAMFES  395 (496)
Q Consensus       388 eR~~Il~~  395 (496)
                      +-+.||-.
T Consensus      1211 DSrtILd~ 1218 (1355)
T PRK10263       1211 DSRTILDQ 1218 (1355)
T ss_pred             HHHHhcCC
Confidence            88877754

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=95.65  E-value=0.0048  Score=59.68  Aligned_cols=22  Identities=36%  Similarity=0.696  Sum_probs=20.1

Q ss_pred             eeeeCCCCChhHHHHHHHHhhh
Q 010975          252 ILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ++++|+||+|||++++.++...
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~~   22 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKDR   22 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHhc
Confidence            4789999999999999999985

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>PRK10536 hypothetical protein; Provisional

Probab=95.63  E-value=0.032  Score=55.48  Aligned_cols=73  Identities=21%  Similarity=0.186  Sum_probs=43.7

Q ss_pred             cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhh-h-c--ceeeeeec-----ccc
Q 010975          215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE-C-K--TTFFNISA-----SSV  285 (496)
Q Consensus       215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~-l-~--~~~i~v~~-----s~l  285 (496)
                      +..+.+.......+...+..              ..-+++.||+|||||+||.+++.+ + +  ...+.+.-     .+.
T Consensus        54 ~~~i~p~n~~Q~~~l~al~~--------------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~  119 (262)
T PRK10536         54 TSPILARNEAQAHYLKAIES--------------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADED  119 (262)
T ss_pred             CccccCCCHHHHHHHHHHhc--------------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhh
Confidence            33455555555555554421              136899999999999999999985 3 2  23333332     333


Q ss_pred             cccccCChHHHHHHHH
Q 010975          286 VSKWRGDSEKLIKVLF  301 (496)
Q Consensus       286 ~~~~~G~~e~~l~~lf  301 (496)
                      .+-..|..++++.-++
T Consensus       120 LGfLPG~~~eK~~p~~  135 (262)
T PRK10536        120 LGFLPGDIAEKFAPYF  135 (262)
T ss_pred             hCcCCCCHHHHHHHHH
Confidence            4445666666555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	496
2qp9_X	355	Crystal Structure Of S.Cerevisiae Vps4 Length = 355		3e-74
3eih_A	340	Crystal Structure Of S.Cerevisiae Vps4 In The Prese		4e-73
2rko_A	331	Crystal Structure Of The Vps4p-Dimer Length = 331		1e-72
3eie_A	322	Crystal Structure Of S.Cerevisiae Vps4 In The So4-B		2e-72
2zam_A	444	Crystal Structure Of Mouse Skd1VPS4B APO-Form Lengt		3e-70
1xwi_A	322	Crystal Structure Of Vps4b Length = 322		6e-70
3d8b_A	357	Crystal Structure Of Human Fidgetin-Like Protein 1		5e-62
3b9p_A	297	Spastin Length = 297		2e-61
3vfd_A	389	Human Spastin Aaa Domain Length = 389		1e-57
3cf1_A	806	Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len		4e-41
1r7r_A	816	The Crystal Structure Of Murine P97VCP AT 3.6A Leng		5e-41
3cf0_A	301	Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH		6e-41
3h4m_A	285	Aaa Atpase Domain Of The Proteasome- Activating Nuc		2e-40
4b4t_L	437	Near-Atomic Resolution Structural Model Of The Yeas		2e-37
3hu2_A	489	Structure Of P97 N-D1 R86a Mutant In Complex With A		2e-37
3hu3_A	489	Structure Of P97 N-D1 R155h Mutant In Complex With		2e-37
3hu1_A	489	Structure Of P97 N-D1 R95g Mutant In Complex With A		2e-37
4b4t_K	428	Near-Atomic Resolution Structural Model Of The Yeas		4e-37
1e32_A	458	Structure Of The N-Terminal Domain And The D1 Aaa D		5e-36
2x8a_A	274	Human Nuclear Valosin Containing Protein Like (Nvl)		9e-36
4b4t_J	405	Near-Atomic Resolution Structural Model Of The Yeas		1e-35
4b4t_M	434	Near-Atomic Resolution Structural Model Of The Yeas		3e-34
2ce7_A	476	Edta Treated Length = 476		3e-34
4b4t_I	437	Near-Atomic Resolution Structural Model Of The Yeas		5e-34
4b4t_H	467	Near-Atomic Resolution Structural Model Of The Yeas		8e-34
3kds_E	465	Apo-ftsh Crystal Structure Length = 465		1e-33
2r62_A	268	Crystal Structure Of Helicobacter Pylori Atp Depend		3e-32
1lv7_A	257	Crystal Structure Of The Aaa Domain Of Ftsh Length		5e-31
2qz4_A	262	Human Paraplegin, Aaa Domain In Complex With Adp Le		4e-30
1iy2_A	278	Crystal Structure Of The Ftsh Atpase Domain From Th		1e-27
1ixz_A	254	Crystal Structure Of The Ftsh Atpase Domain From Th		2e-27
2dhr_A	499	Whole Cytosolic Region Of Atp-Dependent Metalloprot		4e-27
4eiw_A	508	Whole Cytosolic Region Of Atp-Dependent Metalloprot		5e-27
3mhv_C	117	Crystal Structure Of Vps4 And Vta1 Length = 117		1e-06
1ksf_X	758	Crystal Structure Of Clpa, An Hsp100 Chaperone And		9e-06
3pvs_A	447	Structure And Biochemical Activities Of Escherichia		6e-04
3qmz_A	2486	Crystal Structure Of The Cytoplasmic Dynein Heavy C		7e-04
1jbk_A	195	Crystal Structure Of The First Nucelotide Binding D		7e-04
4ai6_A	2695	Dynein Motor Domain - Adp Complex Length = 2695		8e-04

>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4 Length = 355

Iteration: 1
 Score =  275 bits (704), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 152/351 (43%), Positives = 212/351 (60%), Gaps = 33/351 (9%)
Query: 172 GVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEA 231
           G  +N  N+++ +    +    + + L  +L   I+   P+VKWE + GLE AK  LKEA
Sbjct: 7   GSGSNGGNKKISQEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEA 66
Query: 232 VVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRG 291
           V++P+K+P  F G   P  GILL+GPPGTGK+ LAKAVATE  +TFF++S+S +VSKW G
Sbjct: 67  VILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG 126
Query: 292 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 351
           +SEKL+K LF +AR + PS IF+D++DA+   RGE   E EASRR+KTELL+QM+G+   
Sbjct: 127 ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGND 184
Query: 352 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFE---SLLPSQTGEESLPY 408
            + V VL ATN+PW+LD+A+ RR E+RI +PLPD  AR  MFE      PS   +E   Y
Sbjct: 185 SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKED--Y 242
Query: 409 DLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED---V 465
             L   TEGYSGSDI +V K+A MQP+R++      +     DDE  ++ P  P D   +
Sbjct: 243 RTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAI 302
Query: 466 EI----------------------ALKNTRPSAHLHA-HRYEKFNADYGSE 493
           E+                      A+K+TRP+ +     + E+F  D+G E
Sbjct: 303 EMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 353

>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Atpgammas Length = 340

Iteration: 1
 Score =  272 bits (695), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 148/329 (44%), Positives = 202/329 (61%), Gaps = 33/329 (10%)
Query: 194 ETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGIL 253
           + + L  +L   I+   P+VKWE + GLE AK  LKEAV++P+K+P  F G   P  GIL
Sbjct: 14  DNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGIL 73
Query: 254 LFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIF 313
           L+GPPGTGK+ LAKAVATE  +TFF++S+S +VSKW G+SEKL+K LF +AR + PS IF
Sbjct: 74  LYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIF 133
Query: 314 LDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR 373
           +D++DA+   RGE   E EASRR+KTELL+QM+G+    + V VL ATN+PW+LD+A+ R
Sbjct: 134 IDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR 191
Query: 374 RLEKRILVPLPDTEARRAMFE---SLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEA 430
           R E+RI +PLPD  AR  MFE      P    +E   Y  L   TEGYSGSDI +V K+A
Sbjct: 192 RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKED--YRTLGAMTEGYSGSDIAVVVKDA 249
Query: 431 AMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED---VEI-------------------- 467
            MQP+R++      +     DDE  ++ P  P D   +E+                    
Sbjct: 250 LMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDF 309
Query: 468 --ALKNTRPSAHLHA-HRYEKFNADYGSE 493
             A+K+TRP+ +     + E+F  D+G E
Sbjct: 310 LKAIKSTRPTVNEDDLLKQEQFTRDFGQE 338

>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer Length = 331

Iteration: 1
 Score =  270 bits (690), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 149/319 (46%), Positives = 198/319 (62%), Gaps = 37/319 (11%)
Query: 208 RGS----PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKT 263
           RGS    P+VKWE + GLE AK  LKEAV++P+K+P  F G   P  GILL+GPPGTGK+
Sbjct: 15  RGSLSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKS 74
Query: 264 MLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 323
            LAKAVATE  +TFF++S+S +VSKW G+SEKL+K LF +AR + PS IF+DE+DA+   
Sbjct: 75  YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGT 134
Query: 324 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPL 383
           RGE   E EASRR+KTELL+QM+G+    + V VL ATN+PW+LD+A+ RR E+RI +PL
Sbjct: 135 RGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPL 192
Query: 384 PDTEARRAMFE---SLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 440
           PD  AR  MFE      P    +E   Y  L   TEGYSGSDI +V K+A MQP+R++  
Sbjct: 193 PDLAARTTMFEINVGDTPCVLTKED--YRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQS 250
Query: 441 LLEGRQEVAPDDELPQIGPIRPED---VEI----------------------ALKNTRPS 475
               +     DDE  ++ P  P D   +E+                      A+K+TRP+
Sbjct: 251 ATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPT 310
Query: 476 AHLHA-HRYEKFNADYGSE 493
            +     + E+F  D+G E
Sbjct: 311 VNEDDLLKQEQFTRDFGQE 329

>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound State Length = 322

Iteration: 1
 Score =  269 bits (688), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 146/317 (46%), Positives = 198/317 (62%), Gaps = 33/317 (10%)
Query: 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTML 265
           I+   P+VKWE + GLE AK  LKEAV++P+K+P  F G   P  GILL+GPPGTGK+ L
Sbjct: 8   ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYL 67
Query: 266 AKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG 325
           AKAVATE  +TFF++S+S +VSKW G+SEKL+K LF +AR + PS IF+D++DA+   RG
Sbjct: 68  AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG 127
Query: 326 EARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPD 385
           E   E EASRR+KTELL+QM+G+    + V VL ATN+PW+LD+A+ RR E+RI +PLPD
Sbjct: 128 EG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPD 185
Query: 386 TEARRAMFESLL---PSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 442
             AR  MFE  +   P    +E   Y  L   TEGYSGSDI +V K+A MQP+R++    
Sbjct: 186 LAARTTMFEINVGDTPCVLTKED--YRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT 243
Query: 443 EGRQEVAPDDELPQIGPIRPED---VEI----------------------ALKNTRPSAH 477
             +     DDE  ++ P  P D   +E+                      A+K+TRP+ +
Sbjct: 244 HFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 303
Query: 478 LHA-HRYEKFNADYGSE 493
                + E+F  D+G E
Sbjct: 304 EDDLLKQEQFTRDFGQE 320

>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form Length = 444

Iteration: 1
 Score =  262 bits (670), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 131/250 (52%), Positives = 176/250 (70%), Gaps = 4/250 (1%)
Query: 191 DSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWK 250
           D  E + L   L   I+   P+VKW  + GLE AK  LKEAV++PIK+P  FTG  +PW+
Sbjct: 109 DDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWR 168
Query: 251 GILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAP 309
           GILLFGPPGTGK+ LAKAVATE   +TFF+IS+S +VSKW G+SEKL+K LF+LAR + P
Sbjct: 169 GILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKP 228
Query: 310 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 369
           S IF+DEID++   R E  +E EA+RR+KTE L+QM G+   ++ + VL ATN+PW LD+
Sbjct: 229 SIIFIDEIDSLCGSRSE--NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDS 286
Query: 370 AMLRRLEKRILVPLPDTEARRAMFESLLPS-QTGEESLPYDLLVERTEGYSGSDIRLVSK 428
           A+ RR EKRI +PLP+  AR AMF   L S Q       +  L  +T+GYSG+DI ++ +
Sbjct: 287 AIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVR 346
Query: 429 EAAMQPLRRL 438
           +A MQP+R++
Sbjct: 347 DALMQPVRKV 356

>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b Length = 322

Iteration: 1
 Score =  261 bits (667), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 143/322 (44%), Positives = 200/322 (62%), Gaps = 36/322 (11%)
Query: 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTML 265
           I+   P+VKW  + GLE AK  LKEAV++PIK+P  FTG  +PW+GILLFGPPGTGK+ L
Sbjct: 2   IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 61
Query: 266 AKAVATEC-KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 324
           AKAVATE   +TFF+IS+S +VSKW G+SEKL+K LF+LAR + PS IF+DEID++   R
Sbjct: 62  AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 121
Query: 325 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 384
            E  +E EA+RR+KTE L+QM G+   ++ + VL ATN+PW LD+A+ RR EKRI +PLP
Sbjct: 122 SE--NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLP 179
Query: 385 DTEARRAMFE-SLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 443
           +  AR AMF+  L  +Q       +  L  +T+GYSG+DI ++ ++A MQP+R++     
Sbjct: 180 EPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATH 239
Query: 444 GRQEVAP---------DDELPQIGPIRPEDVEI----------------------ALKNT 472
            ++   P         DD L    P  P  +E+                      +L NT
Sbjct: 240 FKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNT 299
Query: 473 RPSAHLH-AHRYEKFNADYGSE 493
           +P+ + H   + +KF  D+G E
Sbjct: 300 KPTVNEHDLLKLKKFTEDFGQE 321

>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In Complex With Adp Length = 357

Iteration: 1
 Score =  235 bits (599), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 135/322 (41%), Positives = 198/322 (61%), Gaps = 24/322 (7%)
Query: 175 ANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVM 234
           A+ ++ERL K L P         + E +  +I+   P V WE I G+E AK  +KE VV 
Sbjct: 52  AHPVDERL-KNLEPK--------MIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVW 102
Query: 235 PIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSE 294
           P+  P  FTGL  P KGILLFGPPGTGKT++ K +A++   TFF+ISASS+ SKW G+ E
Sbjct: 103 PMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGE 162
Query: 295 KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE- 353
           K+++ LF +AR   P+ IF+DEID+++SQRG+   EHE+SRR+KTE L+Q+DG T S E 
Sbjct: 163 KMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG--EHESSRRIKTEFLVQLDGATTSSED 220
Query: 354 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT---GEESLPYDL 410
            + V+ ATN P E+D A  RRL KR+ +PLP+  AR+ +  +L+  +     EE +  + 
Sbjct: 221 RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEI--EQ 278
Query: 411 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 470
           +V++++ +SG+D+  + +EA++ P+R L         + PD    Q+ PI   D E A +
Sbjct: 279 IVQQSDAFSGADMTQLCREASLGPIRSLQT--ADIATITPD----QVRPIAYIDFENAFR 332
Query: 471 NTRPSAH-LHAHRYEKFNADYG 491
             RPS        YE +N  +G
Sbjct: 333 TVRPSVSPKDLELYENWNKTFG 354

>pdb|3B9P|A Chain A, Spastin Length = 297

Iteration: 1
 Score =  233 bits (593), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 137/302 (45%), Positives = 189/302 (62%), Gaps = 20/302 (6%)
Query: 198 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGP 257
           L + +  +I+ G   V+W  I G + AK+ L+E V++P   P+ FTGL +P KG+LLFGP
Sbjct: 3   LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGP 62
Query: 258 PGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEI 317
           PG GKT+LA+AVATEC  TF NISA+S+ SK+ GD EKL++ LF +ARH  PS IF+DE+
Sbjct: 63  PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEV 122
Query: 318 DAIISQRGEARSEHEASRRLKTELLIQMDGL--TQSDELVFVLAATNLPWELDAAMLRRL 375
           D+++S+   + SEHEASRRLKTE L++ DGL      + + VLAATN P ELD A LRR 
Sbjct: 123 DSLLSE--RSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRF 180
Query: 376 EKRILVPLPDTEARRAMFESLLPSQTGEESLPYDL-----LVERTEGYSGSDIRLVSKEA 430
            KR+ V LPD + R  +   LL  Q      P D      L + T+GYSGSD+  ++K+A
Sbjct: 181 TKRVYVSLPDEQTRELLLNRLLQKQGS----PLDTEALRRLAKITDGYSGSDLTALAKDA 236
Query: 431 AMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS-AHLHAHRYEKFNAD 489
           A++P+R L V      E     ++  +  I  +D   +LK  R S A    + YEK++ D
Sbjct: 237 ALEPIRELNV------EQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQD 290
Query: 490 YG 491
           YG
Sbjct: 291 YG 292

>pdb|3VFD|A Chain A, Human Spastin Aaa Domain Length = 389

Iteration: 1
 Score =  220 bits (561), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 133/313 (42%), Positives = 194/313 (61%), Gaps = 14/313 (4%)
Query: 183 QKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYF 242
           +K  L NF + ++  LA  +  +I+     VK++ I G + AK+ L+E V++P   P+ F
Sbjct: 83  KKKDLKNFRNVDSN-LANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELF 141
Query: 243 TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFE 302
           TGL +P +G+LLFGPPG GKTMLAKAVA E   TFFNISA+S+ SK+ G+ EKL++ LF 
Sbjct: 142 TGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFA 201
Query: 303 LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-TQSDELVFVLAAT 361
           +AR   PS IF+D++D+++ +R E   EH+ASRRLKTE LI+ DG+ +  D+ V V+ AT
Sbjct: 202 VARELQPSIIFIDQVDSLLCERREG--EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGAT 259
Query: 362 NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDL--LVERTEGYS 419
           N P ELD A+LRR  KR+ V LP+ E R  + ++LL  Q G      +L  L   T+GYS
Sbjct: 260 NRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQ-GSPLTQKELAQLARMTDGYS 318
Query: 420 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 479
           GSD+  ++K+AA+ P+R L      + E   +    ++  IR  D   +LK  + S    
Sbjct: 319 GSDLTALAKDAALGPIREL------KPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQ 372
Query: 480 A-HRYEKFNADYG 491
               Y ++N D+G
Sbjct: 373 TLEAYIRWNKDFG 385

>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806

Iteration: 1
 Score =  165 bits (418), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 87/235 (37%), Positives = 143/235 (60%), Gaps = 5/235 (2%)
Query: 201 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPG 259
           S  R+ +   P V WE I GLE+ KR L+E V  P+++P  F    ++P KG+L +GPPG
Sbjct: 462 SALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPG 521
Query: 260 TGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 319
            GKT+LAKA+A EC+  F +I    +++ W G+SE  ++ +F+ AR  AP  +F DE+D+
Sbjct: 522 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS 581
Query: 320 IISQR-GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLE 376
           I   R G       A+ R+  ++L +MDG++ + + VF++ ATN P  +D A+LR  RL+
Sbjct: 582 IAKARGGNIGDGGGAADRVINQILTEMDGMS-TKKNVFIIGATNRPDIIDPAILRPGRLD 640
Query: 377 KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAA 431
           + I +PLPD ++R A+ ++ L      + +  + L + T G+SG+D+  + + A 
Sbjct: 641 QLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 695

>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816

Iteration: 1
 Score =  165 bits (418), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 87/234 (37%), Positives = 143/234 (61%), Gaps = 5/234 (2%)
Query: 201 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPG 259
           S  R+ +   P V WE I GLE+ KR L+E V  P+++P  F    ++P KG+L +GPPG
Sbjct: 462 SALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPG 521
Query: 260 TGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 319
            GKT+LAKA+A EC+  F +I    +++ W G+SE  ++ +F+ AR  AP  +F DE+D+
Sbjct: 522 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS 581
Query: 320 IISQR-GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLE 376
           I   R G       A+ R+  ++L +MDG++ + + VF++ ATN P  +D A+LR  RL+
Sbjct: 582 IAKARGGNIGDGGGAADRVINQILTEMDGMS-TKKNVFIIGATNRPDIIDPAILRPGRLD 640
Query: 377 KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEA 430
           + I +PLPD ++R A+ ++ L      + +  + L + T G+SG+D+  + + A
Sbjct: 641 QLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694

>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP Length = 301

Iteration: 1
 Score =  165 bits (417), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 86/232 (37%), Positives = 142/232 (61%), Gaps = 5/232 (2%)
Query: 204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGK 262
           R+ +   P V WE I GLE+ KR L+E V  P+++P  F    ++P KG+L +GPPG GK
Sbjct: 3   RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 62
Query: 263 TMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 322
           T+LAKA+A EC+  F +I    +++ W G+SE  ++ +F+ AR  AP  +F DE+D+I  
Sbjct: 63  TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 122
Query: 323 QR-GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRI 379
            R G       A+ R+  ++L +MDG++ + + VF++ ATN P  +D A+LR  RL++ I
Sbjct: 123 ARGGNIGDGGGAADRVINQILTEMDGMS-TKKNVFIIGATNRPDIIDPAILRPGRLDQLI 181
Query: 380 LVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAA 431
            +PLPD ++R A+ ++ L      + +  + L + T G+SG+D+  + + A 
Sbjct: 182 YIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 233

>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase Length = 285

Iteration: 1
 Score =  163 bits (413), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/233 (40%), Positives = 143/233 (61%), Gaps = 7/233 (3%)
Query: 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 269
           P+V++E I GLE   + ++E V +P+K+P+ F  + + P KGILL+GPPGTGKT+LAKAV
Sbjct: 12  PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAV 71
Query: 270 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 329
           ATE   TF  +  S +V K+ G+   L+K +F+LA+  APS IF+DEIDAI ++R +A +
Sbjct: 72  ATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALT 131
Query: 330 --EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPD 385
             + E  R L  +LL +MDG     + V ++ ATN P  LD A+LR  R ++ I VP PD
Sbjct: 132 GGDREVQRTL-MQLLAEMDGFDARGD-VKIIGATNRPDILDPAILRPGRFDRIIEVPAPD 189
Query: 386 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 438
            + R  + +         E +  + + + TEG  G++++ +  EA M  +R L
Sbjct: 190 EKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL 242

>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437

Iteration: 1
 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/247 (36%), Positives = 143/247 (57%), Gaps = 15/247 (6%)
Query: 212 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 270
           ++ ++ I GL    R L+E + +P+K P+ F  + + P KG+LL+GPPGTGKT+LAKAVA
Sbjct: 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVA 236
Query: 271 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR-GEARS 329
                 F    AS +V K+ G+S ++I+ +F  A+ H P  IF+DE+DAI  +R  E  S
Sbjct: 237 ATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS 296
Query: 330 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTE 387
                +R   ELL QMDG     +   ++ ATN P  LD A+LR  RL++++ +PLP+  
Sbjct: 297 ADREIQRTLMELLTQMDGFDNLGQTKIIM-ATNRPDTLDPALLRPGRLDRKVEIPLPNEA 355
Query: 388 ARRAMFE--SLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 445
            R  +F+  +    +TGE    ++  V+ ++G++G+DIR  + EA    +R      + R
Sbjct: 356 GRLEIFKIHTAKVKKTGE--FDFEAAVKMSDGFNGADIRNCATEAGFFAIR------DDR 407
Query: 446 QEVAPDD 452
             + PDD
Sbjct: 408 DHINPDD 414

>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/268 (34%), Positives = 151/268 (56%), Gaps = 7/268 (2%)
Query: 212 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 270
           +V ++ I G       +KE V +P+++P  F  + + P +GILL+GPPGTGKT++A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 271 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 330
            E    FF I+   ++SK  G+SE  ++  FE A  +AP+ IF+DE+DAI  +R   ++ 
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTH 317
Query: 331 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEA 388
            E  RR+ ++LL  MDGL Q    V V+AATN P  +D A+ R  R ++ + + +PD   
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 389 RRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEV 448
           R  + +    +    + +  + +   T G+ G+D+  +  EAA+Q +R+ M L++   E 
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436
Query: 449 APDDELPQIGPIRPEDVEIALKNTRPSA 476
             D E+     +  +D   AL  + PSA
Sbjct: 437 I-DAEVMNSLAVTMDDFRWALSQSNPSA 463

>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/268 (34%), Positives = 151/268 (56%), Gaps = 7/268 (2%)
Query: 212 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 270
           +V ++ I G       +KE V +P+++P  F  + + P +GILL+GPPGTGKT++A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 271 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 330
            E    FF I+   ++SK  G+SE  ++  FE A  +AP+ IF+DE+DAI  +R   ++ 
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTH 317
Query: 331 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEA 388
            E  RR+ ++LL  MDGL Q    V V+AATN P  +D A+ R  R ++ + + +PD   
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 389 RRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEV 448
           R  + +    +    + +  + +   T G+ G+D+  +  EAA+Q +R+ M L++   E 
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436
Query: 449 APDDELPQIGPIRPEDVEIALKNTRPSA 476
             D E+     +  +D   AL  + PSA
Sbjct: 437 I-DAEVMNSLAVTMDDFRWALSQSNPSA 463

>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score =  153 bits (386), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/268 (34%), Positives = 151/268 (56%), Gaps = 7/268 (2%)
Query: 212 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 270
           +V ++ I G       +KE V +P+++P  F  + + P +GILL+GPPGTGKT++A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 271 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 330
            E    FF I+   ++SK  G+SE  ++  FE A  +AP+ IF+DE+DAI  +R   ++ 
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTH 317
Query: 331 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEA 388
            E  RR+ ++LL  MDGL Q    V V+AATN P  +D A+ R  R ++ + + +PD   
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 389 RRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEV 448
           R  + +    +    + +  + +   T G+ G+D+  +  EAA+Q +R+ M L++   E 
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436
Query: 449 APDDELPQIGPIRPEDVEIALKNTRPSA 476
             D E+     +  +D   AL  + PSA
Sbjct: 437 I-DAEVMNSLAVTMDDFRWALSQSNPSA 463

>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 428

Iteration: 1
 Score =  152 bits (384), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 90/233 (38%), Positives = 140/233 (60%), Gaps = 8/233 (3%)
Query: 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 269
           PDV +  + GL+  K+ ++EAV +P+     +  + + P +G+LL+GPPGTGKTML KAV
Sbjct: 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAV 226
Query: 270 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR- 328
           A   K  F  ++ S  V K+ G+  ++++ +F LAR +APS IF+DE+D+I ++R +A+ 
Sbjct: 227 ANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQT 286
Query: 329 -SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVP-LP 384
            S+ E  R L  ELL QMDG  QS   V V+ ATN    LD A+LR  RL+++I  P L 
Sbjct: 287 GSDREVQRIL-IELLTQMDGFDQSTN-VKVIMATNRADTLDPALLRPGRLDRKIEFPSLR 344
Query: 385 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 437
           D   RR +F ++    +       D L+ R +  SG+ I  + +EA ++ +R+
Sbjct: 345 DRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 397

>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of Membrane Fusion Atpase P97 Length = 458

Iteration: 1
 Score =  149 bits (375), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 82/235 (34%), Positives = 138/235 (58%), Gaps = 6/235 (2%)
Query: 212 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 270
           +V ++ + G       +KE V +P+++P  F  + + P +GILL+GPPGTGKT++A+AVA
Sbjct: 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 271 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 330
            E    FF I+   ++SK  G+SE  ++  FE A  +AP+ IF+DE+DAI  +R   ++ 
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTH 317
Query: 331 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEA 388
            E  RR+ ++LL  MDGL Q    V V+AATN P  +D A+ R  R ++ + + +PD   
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 389 RRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 443
           R  + +    +    + +  + +   T G+ G+D+  +  EAA+Q +R+ M L++
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLID 431

>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C- Terminal Aaa-Atpase Domain Length = 274

Iteration: 1
 Score =  147 bits (372), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 145/241 (60%), Gaps = 19/241 (7%)
Query: 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFT--GLLSPWKGILLFGPPGTGKTMLAKA 268
           P+V W  I  LE+ +  L  A++ P++ P  F   GL++P  G+LL GPPG GKT+LAKA
Sbjct: 5   PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTP-AGVLLAGPPGCGKTLLAKA 63
Query: 269 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 328
           VA E    F ++    +++ + G+SE+ ++ +F+ A++ AP  IF DE+DA+  +R +  
Sbjct: 64  VANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD-- 121
Query: 329 SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDT 386
            E  AS R+  +LL +MDGL ++ + VF++AATN P  +D A+LR  RL+K + V LP  
Sbjct: 122 RETGASVRVVNQLLTEMDGL-EARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPP 180
Query: 387 EARRAMFESL--------LPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 438
             R A+ +++        L +    E++  DL   R + Y+G+D+  + +EA++  LR+ 
Sbjct: 181 ADRLAILKTITKNGTKPPLDADVNLEAIAGDL---RCDCYTGADLSALVREASICALRQE 237
Query: 439 M 439
           M
Sbjct: 238 M 238

>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 405

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/266 (34%), Positives = 147/266 (55%), Gaps = 17/266 (6%)
Query: 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 269
           PD  ++ + GL    + +KE + +P+K+P+ F  L ++  KG++L+GPPGTGKT+LA+AV
Sbjct: 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAV 202
Query: 270 A--TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR--G 325
           A  T+CK  F  +S + +V K+ G+  ++++ LF +AR HAPS IF+DEID+I S R  G
Sbjct: 203 AHHTDCK--FIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEG 260
Query: 326 EARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 383
               + E  R +  ELL Q+DG   S  +  ++A   L   LD A+LR  R++++I  P 
Sbjct: 261 SGGGDSEVQRTM-LELLNQLDGFETSKNIKIIMATNRLDI-LDPALLRPGRIDRKIEFPP 318
Query: 384 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 443
           P   AR  +             +    + E+  G SG+D++ V  EA M  LR      E
Sbjct: 319 PSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALR------E 372
Query: 444 GRQEVAPDDELPQIGPIRPEDVEIAL 469
            R  V  +D    +G +  ++ E A+
Sbjct: 373 RRIHVTQEDFELAVGKVMNKNQETAI 398

>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 434

Iteration: 1
 Score =  143 bits (360), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 86/231 (37%), Positives = 138/231 (59%), Gaps = 7/231 (3%)
Query: 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFT--GLLSPWKGILLFGPPGTGKTMLAKA 268
           P   +  + GL+     L EA+V+P+K    F   G+ +P KG L++GPPGTGKT+LA+A
Sbjct: 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAP-KGALMYGPPGTGKTLLARA 234
Query: 269 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA- 327
            A +   TF  ++A  +V  + G+  KL++  F LA+  AP+ IF+DE+DAI ++R ++ 
Sbjct: 235 CAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE 294
Query: 328 RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPD 385
           +S     +R   ELL Q+DG + SD+ V VLAATN    LD A+LR  RL+++I  PLP 
Sbjct: 295 KSGDREVQRTMLELLNQLDGFS-SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPS 353
Query: 386 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 436
            ++R  + +      T ++ + +  L   T+ ++G+ ++ V+ EA M  LR
Sbjct: 354 EDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALR 404

>pdb|2CE7|A Chain A, Edta Treated Length = 476

Iteration: 1
 Score =  143 bits (360), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/249 (38%), Positives = 138/249 (55%), Gaps = 14/249 (5%)
Query: 209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFT--GLLSPWKGILLFGPPGTGKTMLA 266
           G+  V ++ + G E A   LKE VV  +K P  F   G   P KGILL GPPGTGKT+LA
Sbjct: 9   GNKRVTFKDVGGAEEAIEELKE-VVEFLKDPSKFNRIGARMP-KGILLVGPPGTGKTLLA 66
Query: 267 KAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 326
           +AVA E    FF+IS S  V  + G     ++ LF  A+ HAP  +F+DEIDA+   RG 
Sbjct: 67  RAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA 126
Query: 327 A-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 383
                H+   +   +LL++MDG   S E + V+AATN P  LD A+LR  R +K+I+V  
Sbjct: 127 GLGGGHDEREQTLNQLLVEMDGF-DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDP 185
Query: 384 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 443
           PD   R+ + E    ++   E +  +++ +RT G+ G+D+  +  EAA+   R      E
Sbjct: 186 PDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAR------E 239
Query: 444 GRQEVAPDD 452
           GR ++   D
Sbjct: 240 GRDKITMKD 248

>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437

Iteration: 1
 Score =  142 bits (358), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 87/247 (35%), Positives = 141/247 (57%), Gaps = 11/247 (4%)
Query: 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKA 268
           SP   +  I GLE+  + +KE+V +P+ +P+ +  + + P KG++L+G PGTGKT+LAKA
Sbjct: 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKA 235
Query: 269 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 328
           VA +   TF  I  S ++ K+ GD  +L + +F++A  +APS +F+DEIDAI ++R ++ 
Sbjct: 236 VANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSN 295
Query: 329 SEHEAS-RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPD 385
           S  E   +R   ELL Q+DG     + V V+ ATN    LD A++R  R++++IL   PD
Sbjct: 296 SGGEREIQRTMLELLNQLDGFDDRGD-VKVIMATNKIETLDPALIRPGRIDRKILFENPD 354
Query: 386 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 445
              ++ +           E +  + LV   +  SG+DI+ +  EA +  LR      E R
Sbjct: 355 LSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALR------ERR 408
Query: 446 QEVAPDD 452
            +V  +D
Sbjct: 409 MQVTAED 415

>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 467

Iteration: 1
 Score =  141 bits (356), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 89/260 (34%), Positives = 139/260 (53%), Gaps = 15/260 (5%)
Query: 182 LQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKY 241
           ++ PL P  D + T    E          PDV +  + G ++    L+E V +P+  P+ 
Sbjct: 183 IELPLPPRIDPSVTMMTVEE--------KPDVTYSDVGGCKDQIEKLREVVELPLLSPER 234
Query: 242 FTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVL 300
           F  L + P KGILL+GPPGTGKT+ A+AVA     TF  +  S +V K+ G+  ++++ L
Sbjct: 235 FATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVREL 294
Query: 301 FELARHHAPSTIFLDEIDAIISQRGE--ARSEHEASRRLKTELLIQMDGLTQSDELVFVL 358
           FE+AR      IF DEIDA+   R +  A  ++E  R +  EL+ Q+DG       + V+
Sbjct: 295 FEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTM-LELITQLDGFDPRGN-IKVM 352
Query: 359 AATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTE 416
            ATN P  LD A+LR  R+++++   LPD E R  +F     S + E  + ++L+     
Sbjct: 353 FATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCP 412
Query: 417 GYSGSDIRLVSKEAAMQPLR 436
             +G+++R V  EA M  +R
Sbjct: 413 NSTGAELRSVCTEAGMFAIR 432

>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465

Iteration: 1
 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/249 (38%), Positives = 137/249 (55%), Gaps = 14/249 (5%)
Query: 209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFT--GLLSPWKGILLFGPPGTGKTMLA 266
           G+  V ++ + G E A   LKE VV  +K P  F   G   P KGILL GPPGTG T+LA
Sbjct: 9   GNKRVTFKDVGGAEEAIEELKE-VVEFLKDPSKFNRIGARMP-KGILLVGPPGTGATLLA 66
Query: 267 KAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 326
           +AVA E    FF+IS S  V  + G     ++ LF  A+ HAP  +F+DEIDA+   RG 
Sbjct: 67  RAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA 126
Query: 327 A-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 383
                H+   +   +LL++MDG   S E + V+AATN P  LD A+LR  R +K+I+V  
Sbjct: 127 GLGGGHDEREQTLNQLLVEMDGF-DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDP 185
Query: 384 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 443
           PD   R+ + E    ++   E +  +++ +RT G+ G+D+  +  EAA+   R      E
Sbjct: 186 PDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAR------E 239
Query: 444 GRQEVAPDD 452
           GR ++   D
Sbjct: 240 GRDKITMKD 248

>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Length = 268

Iteration: 1
 Score =  136 bits (342), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 128/227 (56%), Gaps = 6/227 (2%)
Query: 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPW-KGILLFGPPGTGKTMLAKAV 269
           P+V+++ + G E AK  + E +V  +KYP+ +  L +   KG+LL GPPGTGKT+LAKAV
Sbjct: 6   PNVRFKDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAV 64
Query: 270 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR--GEA 327
           A E    FF++  SS +  + G     ++ LFE A+  APS IF+DEIDAI   R  G  
Sbjct: 65  AGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGV 124
Query: 328 RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPD 385
            S ++   +   +LL +MDG    +  V VLAATN P  LD A++R  R ++++LV  PD
Sbjct: 125 VSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPD 184
Query: 386 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAM 432
              R  + +  +        +    + + T G +G+D+  +  EAA+
Sbjct: 185 FNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAAL 231

>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh Length = 257

Iteration: 1
 Score =  132 bits (331), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 124/222 (55%), Gaps = 6/222 (2%)
Query: 215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPW-KGILLFGPPGTGKTMLAKAVATEC 273
           +  + G + AK  + E +V  ++ P  F  L     KG+L+ GPPGTGKT+LAKA+A E 
Sbjct: 11  FADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 274 KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHE 332
           K  FF IS S  V  + G     ++ +FE A+  AP  IF+DEIDA+  QRG      H+
Sbjct: 70  KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD 129
Query: 333 ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARR 390
              +   ++L++MDG  + +E + V+AATN P  LD A+LR  R +++++V LPD   R 
Sbjct: 130 EREQTLNQMLVEMDGF-EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGRE 188
Query: 391 AMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAM 432
            + +  +        +   ++   T G+SG+D+  +  EAA+
Sbjct: 189 QILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAAL 230

>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp Length = 262

Iteration: 1
 Score =  129 bits (324), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/231 (36%), Positives = 129/231 (55%), Gaps = 9/231 (3%)
Query: 213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPW-KGILLFGPPGTGKTMLAKAVAT 271
           V ++ + G+  AK  ++E  V  +K P+ F  L +   KG LL GPPG GKT+LAKAVAT
Sbjct: 3   VSFKDVAGMHEAKLEVRE-FVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 272 ECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEH 331
           E +  F  ++ +  V    G     ++ LF+ AR  AP  +++DEIDA+  +R    S  
Sbjct: 62  EAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF 121
Query: 332 EASRRLKT--ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTE 387
             +   +T  +LL++MDG+  +D  V VLA+TN    LD A++R  RL++ + + LP  +
Sbjct: 122 SNTEEEQTLNQLLVEMDGMGTTDH-VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQ 180
Query: 388 ARRAMFESLLPSQTGEESLPY--DLLVERTEGYSGSDIRLVSKEAAMQPLR 436
            RR +FE  L S    +S  +    L E T G+SG+DI  +  EAA+   R
Sbjct: 181 ERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAR 231

>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 278

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/218 (36%), Positives = 117/218 (53%), Gaps = 8/218 (3%)
Query: 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYF--TGLLSPWKGILLFGPPGTGKTMLAK 267
           +P V ++ + G E AK    + +V  +K P  F   G   P KG+LL GPPG GKT LA+
Sbjct: 34  APKVTFKDVAGAEEAK-EELKEIVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLAR 91
Query: 268 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 327
           AVA E +  F   S S  V  + G     ++ LFE A+ HAP  +F+DEIDA+  +RG  
Sbjct: 92  AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 151
Query: 328 RSEHEASR-RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLP 384
                  R +   +LL++MDG  + D  + V+AATN P  LD A+LR  R +++I +  P
Sbjct: 152 VGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 210
Query: 385 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSD 422
           D + R  +       +   E +   LL +RT G+ G+D
Sbjct: 211 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248

>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 254

Iteration: 1
 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/218 (36%), Positives = 117/218 (53%), Gaps = 8/218 (3%)
Query: 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYF--TGLLSPWKGILLFGPPGTGKTMLAK 267
           +P V ++ + G E AK    + +V  +K P  F   G   P KG+LL GPPG GKT LA+
Sbjct: 10  APKVTFKDVAGAEEAK-EELKEIVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLAR 67
Query: 268 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 327
           AVA E +  F   S S  V  + G     ++ LFE A+ HAP  +F+DEIDA+  +RG  
Sbjct: 68  AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 127
Query: 328 RSEHEASR-RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLP 384
                  R +   +LL++MDG  + D  + V+AATN P  LD A+LR  R +++I +  P
Sbjct: 128 VGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 186
Query: 385 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSD 422
           D + R  +       +   E +   LL +RT G+ G+D
Sbjct: 187 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 224

>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/218 (36%), Positives = 117/218 (53%), Gaps = 8/218 (3%)
Query: 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYF--TGLLSPWKGILLFGPPGTGKTMLAK 267
           +P V ++ + G E AK    + +V  +K P  F   G   P KG+LL GPPG GKT LA+
Sbjct: 25  APKVTFKDVAGAEEAK-EELKEIVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLAR 82
Query: 268 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 327
           AVA E +  F   S S  V  + G     ++ LFE A+ HAP  +F+DEIDA+  +RG  
Sbjct: 83  AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 142
Query: 328 RSEHEASR-RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLP 384
                  R +   +LL++MDG  + D  + V+AATN P  LD A+LR  R +++I +  P
Sbjct: 143 VGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 201
Query: 385 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSD 422
           D + R  +       +   E +   LL +RT G+ G+D
Sbjct: 202 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 239

>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508

Iteration: 1
 Score =  119 bits (297), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/218 (36%), Positives = 117/218 (53%), Gaps = 8/218 (3%)
Query: 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYF--TGLLSPWKGILLFGPPGTGKTMLAK 267
           +P V ++ + G E AK    + +V  +K P  F   G   P KG+LL GPPG GKT LA+
Sbjct: 34  APKVTFKDVAGAEEAK-EELKEIVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLAR 91
Query: 268 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 327
           AVA E +  F   S S  V  + G     ++ LFE A+ HAP  +F+DEIDA+  +RG  
Sbjct: 92  AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 151
Query: 328 RSEHEASR-RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLP 384
                  R +   +LL++MDG  + D  + V+AATN P  LD A+LR  R +++I +  P
Sbjct: 152 VGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 210
Query: 385 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSD 422
           D + R  +       +   E +   LL +RT G+ G+D
Sbjct: 211 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248

>pdb|3MHV|C Chain C, Crystal Structure Of Vps4 And Vta1 Length = 117

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 384 PDTEARRAMFE---SLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 440
           PD  AR  MFE      P    +E   Y  L   TEGYSGSDI +V K+A MQP+R++  
Sbjct: 3   PDLAARTTMFEINVGDTPCVLTKED--YRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQS 60
Query: 441 LLEGRQEVAPDDELPQIGPIRPED 464
               +     DDE  ++ P  P D
Sbjct: 61  ATHFKDVSTEDDETRKLTPCSPGD 84

>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And Regulator Of Clpap Protease: Structural Basis Of Differences In Function Of The Two Aaa+ Atpase Domains Length = 758

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 23/171 (13%)
Query: 253 LLFGPPGTGKTMLAKAVA------------TECKTTFFNISASSVVSKWRGDSEKLIKVL 300
           LL G  G GKT +A+ +A             +C     +I +    +K+RGD EK  K L
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 301 FELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTEL---LIQMDGLTQSDELVFV 357
            +       S +F+DEI  II     +  + +A+  +K  L    I++ G T   E    
Sbjct: 271 LKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF--- 327
Query: 358 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPY 408
              +N+ +E D A+ RR +K I +  P  E    +   L P       + Y
Sbjct: 328 ---SNI-FEKDRALARRFQK-IDITEPSIEETVQIINGLKPKYEAHHDVRY 373

>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli Mgsa Length = 447

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 44/179 (24%)
Query: 252 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAP-- 309
           ++L+GPPGTGKT LA+ +A         ISA +          K I+   E AR +    
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVT-------SGVKEIREAIERARQNRNAG 105
Query: 310 --STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE 366
             + +F+DE+             H  ++  +   L  ++  T    + F+ A T  P +E
Sbjct: 106 RRTILFVDEV-------------HRFNKSQQDAFLPHIEDGT----ITFIGATTENPSFE 148
Query: 367 LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRL 425
           L++A+L R             AR  + +SL  S    E +    + ++T GY G DI L
Sbjct: 149 LNSALLSR-------------ARVYLLKSL--STEDIEQVLTQAMEDKTRGYGGQDIVL 192

>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain Motor Domain Length = 2486

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
Query: 224  AKRLLKEAVVMP----IKYPKYFTGLLSPWKGILLFGPPGTGKTML 265
            A  +++  +V+P    IK+ K F  LL+  +GI+L GPPG+GKTM+
Sbjct: 1019 AHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMI 1064

>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain Of Clpb Length = 195

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 25/151 (16%)
Query: 253 LLFGPPGTGKTMLAKAVATEC------------KTTFFNISASSVVSKWRGD-SEKLIKV 299
           +L G PG GKT + + +A               +    ++ A    +K+RG+  E+L  V
Sbjct: 47  VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106
Query: 300 LFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL---IQMDGLTQSDELVF 356
           L +LA+      +F+DE+  ++   G+A    +A   LK  L    +   G T  DE   
Sbjct: 107 LNDLAKQEGNVILFIDELHTMVGA-GKADGAMDAGNMLKPALARGELHCVGATTLDEYRQ 165
Query: 357 VLAATNLPWELDAAMLRRLEKRILVPLPDTE 387
            +       E DAA+ RR +K + V  P  E
Sbjct: 166 YI-------EKDAALERRFQK-VFVAEPSVE 188

>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex Length = 2695

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
Query: 224  AKRLLKEAVVMP----IKYPKYFTGLLSPWKGILLFGPPGTGKTML 265
            A  +++  +V+P    IK+ K F  LL+  +GI+L GPPG+GKTM+
Sbjct: 1238 AHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMI 1283

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	496
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	1e-151
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	1e-151
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	1e-149
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	1e-148
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	1e-148
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	1e-144
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	1e-139
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	1e-85
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	5e-84
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	2e-71
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	5e-83
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	1e-81
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	3e-78
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	9e-55
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	2e-45
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	8e-45
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	2e-43
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	2e-43
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	2e-43
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	1e-39
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	1e-35
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	2e-35
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	2e-13
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	1e-10
3pvs_A	447	Replication-associated recombination protein A; ma	1e-07
2krk_A	86	26S protease regulatory subunit 8; structural geno	4e-07
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	4e-06
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	4e-06
3aji_B	83	S6C, proteasome (prosome, macropain) 26S subunit,	5e-06
3kw6_A	78	26S protease regulatory subunit 8; structural geno	8e-06
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	9e-05
2dzn_B	82	26S protease regulatory subunit 6B homolog; ankyri	2e-04
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	6e-04

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297

 Score =  433 bits (1116), Expect = e-151
 Identities = 135/305 (44%), Positives = 190/305 (62%), Gaps = 12/305 (3%)

Query: 196 RALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLF 255
           + L + +  +I+ G   V+W  I G + AK+ L+E V++P   P+ FTGL +P KG+LLF
Sbjct: 1   QKLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLF 60

Query: 256 GPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLD 315
           GPPG GKT+LA+AVATEC  TF NISA+S+ SK+ GD EKL++ LF +ARH  PS IF+D
Sbjct: 61  GPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFID 120

Query: 316 EIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS--DELVFVLAATNLPWELDAAMLR 373
           E+D+++S+R    SEHEASRRLKTE L++ DGL  +   + + VLAATN P ELD A LR
Sbjct: 121 EVDSLLSERSS--SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR 178

Query: 374 RLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAM 432
           R  KR+ V LPD + R  +   LL  Q           L + T+GYSGSD+  ++K+AA+
Sbjct: 179 RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAAL 238

Query: 433 QPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS-AHLHAHRYEKFNADYG 491
           +P+R L        E     ++  +  I  +D   +LK  R S A    + YEK++ DYG
Sbjct: 239 EPIRELN------VEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYG 292

Query: 492 SEILQ 496
              ++
Sbjct: 293 DITIK 297

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322

 Score =  432 bits (1113), Expect = e-151
 Identities = 141/317 (44%), Positives = 191/317 (60%), Gaps = 29/317 (9%)

Query: 204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKT 263
             I+   P+VKWE + GLE AK  LKEAV++P+K+P  F G   P  GILL+GPPGTGK+
Sbjct: 6   TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKS 65

Query: 264 MLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 323
            LAKAVATE  +TFF++S+S +VSKW G+SEKL+K LF +AR + PS IF+D++DA+   
Sbjct: 66  YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT 125

Query: 324 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPL 383
           RGE   E EASRR+KTELL+QM+G+    + V VL ATN+PW+LD+A+ RR E+RI +PL
Sbjct: 126 RGE--GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPL 183

Query: 384 PDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 442
           PD  AR  MFE  +           Y  L   TEGYSGSDI +V K+A MQP+R++    
Sbjct: 184 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT 243

Query: 443 EGRQEVAPDDELPQIG-------------------------PIRPEDVEIALKNTRPS-A 476
             +     DDE  ++                           +  +D   A+K+TRP+  
Sbjct: 244 HFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 303

Query: 477 HLHAHRYEKFNADYGSE 493
                + E+F  D+G E
Sbjct: 304 EDDLLKQEQFTRDFGQE 320

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322

 Score =  428 bits (1103), Expect = e-149
 Identities = 138/322 (42%), Positives = 196/322 (60%), Gaps = 36/322 (11%)

Query: 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTML 265
           I+   P+VKW  + GLE AK  LKEAV++PIK+P  FTG  +PW+GILLFGPPGTGK+ L
Sbjct: 2   IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 61

Query: 266 AKAVATECK-TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 324
           AKAVATE   +TFF+IS+S +VSKW G+SEKL+K LF+LAR + PS IF+DEID++   R
Sbjct: 62  AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 121

Query: 325 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 384
            E  +E EA+RR+KTE L+QM G+   ++ + VL ATN+PW LD+A+ RR EKRI +PLP
Sbjct: 122 SE--NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLP 179

Query: 385 DTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 443
           +  AR AMF+  L +     +   +  L  +T+GYSG+DI ++ ++A MQP+R++     
Sbjct: 180 EPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATH 239

Query: 444 GRQEVAPDDELPQIG-------------------------------PIRPEDVEIALKNT 472
            ++   P    P                                   +   D+  +L NT
Sbjct: 240 FKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNT 299

Query: 473 RPSAHLH-AHRYEKFNADYGSE 493
           +P+ + H   + +KF  D+G E
Sbjct: 300 KPTVNEHDLLKLKKFTEDFGQE 321

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389

 Score =  429 bits (1105), Expect = e-148
 Identities = 131/314 (41%), Positives = 191/314 (60%), Gaps = 12/314 (3%)

Query: 183 QKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYF 242
           +K  L NF + ++  LA  +  +I+     VK++ I G + AK+ L+E V++P   P+ F
Sbjct: 83  KKKDLKNFRNVDSN-LANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELF 141

Query: 243 TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFE 302
           TGL +P +G+LLFGPPG GKTMLAKAVA E   TFFNISA+S+ SK+ G+ EKL++ LF 
Sbjct: 142 TGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFA 201

Query: 303 LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-TQSDELVFVLAAT 361
           +AR   PS IF+D++D+++ +R E   EH+ASRRLKTE LI+ DG+ +  D+ V V+ AT
Sbjct: 202 VARELQPSIIFIDQVDSLLCERRE--GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGAT 259

Query: 362 NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSG 420
           N P ELD A+LRR  KR+ V LP+ E R  + ++LL  Q    +      L   T+GYSG
Sbjct: 260 NRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSG 319

Query: 421 SDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA 480
           SD+  ++K+AA+ P+R L        E   +    ++  IR  D   +LK  + S     
Sbjct: 320 SDLTALAKDAALGPIRELK------PEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQT 373

Query: 481 -HRYEKFNADYGSE 493
              Y ++N D+G  
Sbjct: 374 LEAYIRWNKDFGDT 387

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357

 Score =  426 bits (1096), Expect = e-148
 Identities = 126/298 (42%), Positives = 188/298 (63%), Gaps = 11/298 (3%)

Query: 198 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGP 257
           + E +  +I+   P V WE I G+E AK  +KE VV P+  P  FTGL  P KGILLFGP
Sbjct: 66  MIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGP 125

Query: 258 PGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEI 317
           PGTGKT++ K +A++   TFF+ISASS+ SKW G+ EK+++ LF +AR   P+ IF+DEI
Sbjct: 126 PGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEI 185

Query: 318 DAIISQRGEARSEHEASRRLKTELLIQMDGL-TQSDELVFVLAATNLPWELDAAMLRRLE 376
           D+++SQRG+   EHE+SRR+KTE L+Q+DG  T S++ + V+ ATN P E+D A  RRL 
Sbjct: 186 DSLLSQRGD--GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLV 243

Query: 377 KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPL 435
           KR+ +PLP+  AR+ +  +L+  +    S    + +V++++ +SG+D+  + +EA++ P+
Sbjct: 244 KRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPI 303

Query: 436 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS-AHLHAHRYEKFNADYGS 492
           R L         + PD    Q+ PI   D E A +  RPS +      YE +N  +G 
Sbjct: 304 RSLQT--ADIATITPD----QVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGC 355

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355

 Score =  416 bits (1071), Expect = e-144
 Identities = 144/342 (42%), Positives = 203/342 (59%), Gaps = 29/342 (8%)

Query: 179 NERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKY 238
           N+++ +    +    + + L  +L   I+   P+VKWE + GLE AK  LKEAV++P+K+
Sbjct: 14  NKKISQEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKF 73

Query: 239 PKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIK 298
           P  F G   P  GILL+GPPGTGK+ LAKAVATE  +TFF++S+S +VSKW G+SEKL+K
Sbjct: 74  PHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVK 133

Query: 299 VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 358
            LF +AR + PS IF+D++DA+   RGE   E EASRR+KTELL+QM+G+    + V VL
Sbjct: 134 QLFAMARENKPSIIFIDQVDALTGTRGE--GESEASRRIKTELLVQMNGVGNDSQGVLVL 191

Query: 359 AATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 417
            ATN+PW+LD+A+ RR E+RI +PLPD  AR  MFE  +       +   Y  L   TEG
Sbjct: 192 GATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEG 251

Query: 418 YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIG------------------- 458
           YSGSDI +V K+A MQP+R++      +     DDE  ++                    
Sbjct: 252 YSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEA 311

Query: 459 ------PIRPEDVEIALKNTRPS-AHLHAHRYEKFNADYGSE 493
                  +  +D   A+K+TRP+       + E+F  D+G E
Sbjct: 312 DELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 353

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444

 Score =  407 bits (1048), Expect = e-139
 Identities = 146/418 (34%), Positives = 213/418 (50%), Gaps = 39/418 (9%)

Query: 110 FKMFYDAKFGRKKIKEPEKGEITERPVSDGSSLNSNGHVQNTSDMAVYEQYRTQGSGSTC 169
            +++  A      +    K E                ++     +  Y + + +      
Sbjct: 31  LQLYQHAVQYFLHVV---KYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKKEKKPQKPV 87

Query: 170 LNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLK 229
                  V  +          D  E + L   L   I+   P+VKW  + GLE AK  LK
Sbjct: 88  KEEQSGPVDEKGNDSDGEAESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALK 147

Query: 230 EAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-TTFFNISASSVVSK 288
           EAV++PIK+P  FTG  +PW+GILLFGPPGTGK+ LAKAVATE   +TFF+IS+S +VSK
Sbjct: 148 EAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207

Query: 289 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 348
           W G+SEKL+K LF+LAR + PS IF+DEID++   R E  +E EA+RR+KTE L+QM G+
Sbjct: 208 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE--NESEAARRIKTEFLVQMQGV 265

Query: 349 TQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ-TGEESLP 407
              ++ + VL ATN+PW LD+A+ RR EKRI +PLP+  AR AMF   L S         
Sbjct: 266 GVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEAD 325

Query: 408 YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIG--------- 458
           +  L  +T+GYSG+DI ++ ++A MQP+R++      ++   P    P            
Sbjct: 326 FQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCS 385

Query: 459 ----------------------PIRPEDVEIALKNTRPS-AHLHAHRYEKFNADYGSE 493
                                  +   D+  +L +T+P+       + +KF  D+G E
Sbjct: 386 PGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQE 443

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301

 Score =  264 bits (678), Expect = 1e-85
 Identities = 94/283 (33%), Positives = 157/283 (55%), Gaps = 12/283 (4%)

Query: 204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGK 262
           R+ +   P V WE I GLE+ KR L+E V  P+++P  F    ++P KG+L +GPPG GK
Sbjct: 3   RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 62

Query: 263 TMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 322
           T+LAKA+A EC+  F +I    +++ W G+SE  ++ +F+ AR  AP  +F DE+D+I  
Sbjct: 63  TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 122

Query: 323 QRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRI 379
            RG    +   A+ R+  ++L +MDG++     VF++ ATN P  +D A+LR  RL++ I
Sbjct: 123 ARGGNIGDGGGAADRVINQILTEMDGMSTKKN-VFIIGATNRPDIIDPAILRPGRLDQLI 181

Query: 380 LVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 439
            +PLPD ++R A+ ++ L      + +  + L + T G+SG+D+  + + A    +R  +
Sbjct: 182 YIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 241

Query: 440 -------VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 475
                     +        +E   +  IR +  E A++  R S
Sbjct: 242 ESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 284

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274

 Score =  257 bits (658), Expect = 5e-83
 Identities = 89/274 (32%), Positives = 146/274 (53%), Gaps = 18/274 (6%)

Query: 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 269
           P+V W  I  LE+ +  L  A++ P++ P  F  L L    G+LL GPPG GKT+LAKAV
Sbjct: 5   PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAV 64

Query: 270 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 329
           A E    F ++    +++ + G+SE+ ++ +F+ A++ AP  IF DE+DA+  +R +   
Sbjct: 65  ANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD--R 122

Query: 330 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTE 387
           E  AS R+  +LL +MDGL    + VF++AATN P  +D A+LR  RL+K + V LP   
Sbjct: 123 ETGASVRVVNQLLTEMDGLEARQQ-VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA 181

Query: 388 ARRAMFESLLPSQTG---EESLPYDLLVE--RTEGYSGSDIRLVSKEAAMQPLRRLMVLL 442
            R A+ +++  + T    +  +  + +    R + Y+G+D+  + +EA++  LR+ M   
Sbjct: 182 DRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM--- 238

Query: 443 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSA 476
                            +  +  E A K  R S 
Sbjct: 239 ----ARQKSGNEKGELKVSHKHFEEAFKKVRSSI 268

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489

 Score =  260 bits (667), Expect = 1e-81
 Identities = 92/276 (33%), Positives = 152/276 (55%), Gaps = 7/276 (2%)

Query: 204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGK 262
            D      +V ++ I G       +KE V +P+++P  F  + + P +GILL+GPPGTGK
Sbjct: 192 EDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251

Query: 263 TMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 322
           T++A+AVA E    FF I+   ++SK  G+SE  ++  FE A  +AP+ IF+DE+DAI  
Sbjct: 252 TLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAP 311

Query: 323 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRIL 380
           +R +   E E  RR+ ++LL  MDGL Q    V V+AATN P  +D A+ R  R ++ + 
Sbjct: 312 KREKTHGEVE--RRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVD 368

Query: 381 VPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 440
           + +PD   R  + +    +    + +  + +   T G+ G+D+  +  EAA+Q +R+ M 
Sbjct: 369 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428

Query: 441 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSA 476
           L++   E    + +  +  +  +D   AL  + PSA
Sbjct: 429 LIDLEDETIDAEVMNSLA-VTMDDFRWALSQSNPSA 463

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285

 Score =  245 bits (627), Expect = 3e-78
 Identities = 95/247 (38%), Positives = 145/247 (58%), Gaps = 11/247 (4%)

Query: 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKA 268
            P+V++E I GLE   + ++E V +P+K+P+ F  + + P KGILL+GPPGTGKT+LAKA
Sbjct: 11  RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKA 70

Query: 269 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 328
           VATE   TF  +  S +V K+ G+   L+K +F+LA+  APS IF+DEIDAI ++R +A 
Sbjct: 71  VATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDAL 130

Query: 329 SEHEA-SRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPD 385
           +  +   +R   +LL +MDG     + V ++ ATN P  LD A+LR  R ++ I VP PD
Sbjct: 131 TGGDREVQRTLMQLLAEMDGFDARGD-VKIIGATNRPDILDPAILRPGRFDRIIEVPAPD 189

Query: 386 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 445
            + R  + +         E +  + + + TEG  G++++ +  EA M  +R        R
Sbjct: 190 EKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE------LR 243

Query: 446 QEVAPDD 452
             V  DD
Sbjct: 244 DYVTMDD 250

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293

 Score =  184 bits (469), Expect = 9e-55
 Identities = 47/272 (17%), Positives = 97/272 (35%), Gaps = 29/272 (10%)

Query: 218 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF 277
           + G   A   + + VV   K       +  P   + ++G  G GK+   + V  +     
Sbjct: 6   LDGFYIAPAFMDKLVVHITKNFLKLPNIKVP-LILGIWGGKGQGKSFQCELVFRKMGINP 64

Query: 278 FNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEA 333
             +SA  + S   G+  KLI+  +  A    R      +F++++DA   + G        
Sbjct: 65  IMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVN 124

Query: 334 SR---RLKTELL-----IQMDGLTQSDEL--VFVLAATNLPWELDAAMLR--RLEKRILV 381
           ++        +      +Q+ G+    E   V ++   N    L A ++R  R+EK    
Sbjct: 125 NQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 184

Query: 382 PLPDTEAR--RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 439
           P  +        +F +        +++P + +V+  + + G  I       A      + 
Sbjct: 185 PTREDRIGVCTGIFRT--------DNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVR 236

Query: 440 --VLLEGRQEVAPDDELPQIGPIRPEDVEIAL 469
             V   G +++         GP   E  ++ +
Sbjct: 237 KWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTI 268

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262

 Score =  158 bits (402), Expect = 2e-45
 Identities = 83/233 (35%), Positives = 129/233 (55%), Gaps = 11/233 (4%)

Query: 213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTGKTMLAKAVA 270
           V ++ + G+  AK  ++E  V  +K P+ F  L +  P KG LL GPPG GKT+LAKAVA
Sbjct: 3   VSFKDVAGMHEAKLEVRE-FVDYLKSPERFLQLGAKVP-KGALLLGPPGCGKTLLAKAVA 60

Query: 271 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 330
           TE +  F  ++ +  V    G     ++ LF+ AR  AP  +++DEIDA+  +R    S 
Sbjct: 61  TEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSG 120

Query: 331 HEASRRLKT--ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDT 386
              +   +T  +LL++MDG+  + + V VLA+TN    LD A++R  RL++ + + LP  
Sbjct: 121 FSNTEEEQTLNQLLVEMDGMG-TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTL 179

Query: 387 EARRAMFE-SLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 437
           + RR +FE  L   +  +  +     L E T G+SG+DI  +  EAA+   R 
Sbjct: 180 QERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE 232

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268

 Score =  157 bits (399), Expect = 8e-45
 Identities = 86/234 (36%), Positives = 128/234 (54%), Gaps = 8/234 (3%)

Query: 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTGKTMLAK 267
            P+V+++ + G E AK  + E +V  +KYP+ +  L +  P KG+LL GPPGTGKT+LAK
Sbjct: 5   KPNVRFKDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIP-KGVLLVGPPGTGKTLLAK 62

Query: 268 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 327
           AVA E    FF++  SS +  + G     ++ LFE A+  APS IF+DEIDAI   R   
Sbjct: 63  AVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAG 122

Query: 328 RSEHEASRRLKT--ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 383
                   R +T  +LL +MDG    +  V VLAATN P  LD A++R  R ++++LV  
Sbjct: 123 GVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDK 182

Query: 384 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 437
           PD   R  + +  +        +    + + T G +G+D+  +  EAA+   R 
Sbjct: 183 PDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRN 236

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278

 Score =  154 bits (390), Expect = 2e-43
 Identities = 85/233 (36%), Positives = 128/233 (54%), Gaps = 8/233 (3%)

Query: 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTGKTMLAK 267
           +P V ++ + G E AK  LKE +V  +K P  F  + +  P KG+LL GPPG GKT LA+
Sbjct: 34  APKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLAR 91

Query: 268 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 327
           AVA E +  F   S S  V  + G     ++ LFE A+ HAP  +F+DEIDA+  +RG  
Sbjct: 92  AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 151

Query: 328 RS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLP 384
               ++   +   +LL++MDG  + D  + V+AATN P  LD A+LR  R +++I +  P
Sbjct: 152 VGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 210

Query: 385 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 437
           D + R  +       +   E +   LL +RT G+ G+D+  +  EAA+   R 
Sbjct: 211 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 263

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254

 Score =  153 bits (388), Expect = 2e-43
 Identities = 85/239 (35%), Positives = 130/239 (54%), Gaps = 8/239 (3%)

Query: 204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTG 261
             ++  +P V ++ + G E AK  LKE +V  +K P  F  + +  P KG+LL GPPG G
Sbjct: 4   GSVLTEAPKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIP-KGVLLVGPPGVG 61

Query: 262 KTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAII 321
           KT LA+AVA E +  F   S S  V  + G     ++ LFE A+ HAP  +F+DEIDA+ 
Sbjct: 62  KTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 121

Query: 322 SQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKR 378
            +RG      ++   +   +LL++MDG  + D  + V+AATN P  LD A+LR  R +++
Sbjct: 122 RKRGSGVGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQ 180

Query: 379 ILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 437
           I +  PD + R  +       +   E +   LL +RT G+ G+D+  +  EAA+   R 
Sbjct: 181 IAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 239

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257

 Score =  153 bits (388), Expect = 2e-43
 Identities = 81/234 (34%), Positives = 126/234 (53%), Gaps = 8/234 (3%)

Query: 209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTGKTMLA 266
                 +  + G + AK  + E +V  ++ P  F  L    P KG+L+ GPPGTGKT+LA
Sbjct: 5   DQIKTTFADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIP-KGVLMVGPPGTGKTLLA 62

Query: 267 KAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 326
           KA+A E K  FF IS S  V  + G     ++ +FE A+  AP  IF+DEIDA+  QRG 
Sbjct: 63  KAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGA 122

Query: 327 ARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 383
                H+   +   ++L++MDG  + +E + V+AATN P  LD A+LR  R +++++V L
Sbjct: 123 GLGGGHDEREQTLNQMLVEMDGF-EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL 181

Query: 384 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 437
           PD   R  + +  +        +   ++   T G+SG+D+  +  EAA+   R 
Sbjct: 182 PDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 235

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272

 Score =  143 bits (362), Expect = 1e-39
 Identities = 44/249 (17%), Positives = 90/249 (36%), Gaps = 15/249 (6%)

Query: 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVA 270
                  I    +    + +   + ++  K      +P   +LL GPP +GKT LA  +A
Sbjct: 28  ASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDR--TPLVSVLLEGPPHSGKTALAAKIA 85

Query: 271 TECKTTFFNISASSVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 329
            E    F  I +   +  +   ++ + +K +F+ A     S + +D+I+ ++        
Sbjct: 86  EESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-- 143

Query: 330 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAA-MLRRLEKRILVPLPDTEA 388
               S  +   LL+ +         + ++  T+    L    ML      I V  P+   
Sbjct: 144 -PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHV--PNIAT 200

Query: 389 RRAMFESLLPSQTGEESLPYDLLVERTEGYS---GSDIRLVSKEAAMQ--PLRRLMVLLE 443
              + E+L      ++      + ++ +G     G    L+  E ++Q  P  R+   L 
Sbjct: 201 GEQLLEALELLGNFKDK-ERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLA 259

Query: 444 GRQEVAPDD 452
             +E     
Sbjct: 260 LLREEGASP 268

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476

 Score =  137 bits (347), Expect = 1e-35
 Identities = 94/250 (37%), Positives = 133/250 (53%), Gaps = 40/250 (16%)

Query: 209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTGKTMLA 266
           G+  V ++ + G E A   LKE VV  +K P  F  + +  P KGILL GPPGTGKT+LA
Sbjct: 9   GNKRVTFKDVGGAEEAIEELKE-VVEFLKDPSKFNRIGARMP-KGILLVGPPGTGKTLLA 66

Query: 267 KAVATECKTTFFNISASSVVSKWRGDSEKLIKV-------LFELARHHAPSTIFLDEIDA 319
           +AVA E    FF+IS S  V       E  + V       LF  A+ HAP  +F+DEIDA
Sbjct: 67  RAVAGEANVPFFHISGSDFV-------ELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDA 119

Query: 320 IISQRG--------EARSEHEASRRLKT--ELLIQMDGLTQSDELVFVLAATNLPWELDA 369
           +   RG        E         R +T  +LL++MDG   S E + V+AATN P  LD 
Sbjct: 120 VGRHRGAGLGGGHDE---------REQTLNQLLVEMDGF-DSKEGIIVMAATNRPDILDP 169

Query: 370 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVS 427
           A+LR  R +K+I+V  PD   R+ + E    ++   E +  +++ +RT G+ G+D+  + 
Sbjct: 170 ALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLV 229

Query: 428 KEAAMQPLRR 437
            EAA+   R 
Sbjct: 230 NEAALLAARE 239

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499

 Score =  137 bits (347), Expect = 2e-35
 Identities = 89/249 (35%), Positives = 128/249 (51%), Gaps = 40/249 (16%)

Query: 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTGKTMLAK 267
           +P V ++ + G E AK  LKE +V  +K P  F  + +  P KG+LL GPPG GKT LA+
Sbjct: 25  APKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLAR 82

Query: 268 AVATECKTTFFNISASSVVSKWRGDSEKLIKV-------LFELARHHAPSTIFLDEIDAI 320
           AVA E +  F   S S  V       E  + V       LFE A+ HAP  +F+DEIDA+
Sbjct: 83  AVAGEARVPFITASGSDFV-------EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV 135

Query: 321 ISQRG--------EARSEHEASRRLKT--ELLIQMDGLTQSDELVFVLAATNLPWELDAA 370
             +RG        E         R +T  +LL++MDG  + D  + V+AATN P  LD A
Sbjct: 136 GRKRGSGVGGGNDE---------REQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPA 185

Query: 371 MLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSK 428
           +LR  R +++I +  PD + R  +       +   E +   LL +RT G+ G+D+  +  
Sbjct: 186 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 245

Query: 429 EAAMQPLRR 437
           EAA+   R 
Sbjct: 246 EAALLAARE 254

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 75.3 bits (184), Expect = 2e-14
 Identities = 66/419 (15%), Positives = 126/419 (30%), Gaps = 115/419 (27%)

Query: 108 QDFKMFYDAK----FGRKKIKEPEKGEITERPVSDGSS------LNSNGHVQNTSDMAVY 157
             F   +D K      +  + + E   I     +   +      L S    +      V 
Sbjct: 27  DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ--EEMVQKFVE 84

Query: 158 EQYRTQGSGSTCLN-GVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSP-DVKW 215
           E  R         N   L + I    ++P +      E R   + L  D    +  +V  
Sbjct: 85  EVLRI--------NYKFLMSPIKTEQRQPSMMTRMYIEQR---DRLYNDNQVFAKYNVS- 132

Query: 216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT 275
             ++     ++ L E               L P K +L+ G  G+GKT +A  V    K 
Sbjct: 133 -RLQPYLKLRQALLE---------------LRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 276 T---FFNISASSVVSKW-----RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 327
                F I        W         E ++++L +L     P+  +    D   + +   
Sbjct: 177 QCKMDFKIF-------WLNLKNCNSPETVLEMLQKLLYQIDPN--WTSRSDHSSNIKLRI 227

Query: 328 RSEHEASRRL------KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILV 381
            S     RRL      +  LL+ +  +   +               +A  L     +IL+
Sbjct: 228 HSIQAELRRLLKSKPYENCLLV-LLNV--QN-----------AKAWNAFNLS---CKILL 270

Query: 382 PLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIR-LVSKEAAMQPLRRLMV 440
               T   + + + L  + T   S     L   +   +  +++ L+ K    +P      
Sbjct: 271 ----TTRFKQVTDFLSAATTTHIS-----LDHHSMTLTPDEVKSLLLKYLDCRP------ 315

Query: 441 LLEGRQEVAPDDELP-QIGPIRPEDVEI--ALKNTRPSAHLHAHRYEKFNADYGSEILQ 496
                       +LP ++    P  + I         +       ++  N D  + I++
Sbjct: 316 -----------QDLPREVLTTNPRRLSIIAESIRDGLA---TWDNWKHVNCDKLTTIIE 360

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 33/212 (15%), Positives = 60/212 (28%), Gaps = 80/212 (37%)

Query: 7   VHNLDFDIRALTKCLKEG-----IITSRFIISKFI---IGPPHAFFYSFGSPPFQFSLAI 58
           + ++  +++   K   E      I+    I   F    + PP+   Y             
Sbjct: 428 IPSIYLELKV--KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY------------- 472

Query: 59  QLAGCCSVETERERFFFFLIFILSAISLLLRLSNLSAMADEPMPTRWTFQDFKMFY-DAK 117
                         F+  +   L  I             +           F+M + D +
Sbjct: 473 --------------FYSHIGHHLKNIE----------HPER-------MTLFRMVFLDFR 501

Query: 118 FGRKKIKEPEKGEITERPVSDGSSLNSNGHVQNT-SDMAVYEQYRTQGSGSTCLNGVLAN 176
           F  +KI+             D ++ N++G + NT   +  Y+ Y                
Sbjct: 502 FLEQKIR------------HDSTAWNASGSILNTLQQLKFYKPYICDNDP---------- 539

Query: 177 VINERLQKPLLPNFDSAETRALAESLCRDIIR 208
              ERL   +L      E   L  S   D++R
Sbjct: 540 -KYERLVNAILDFLPKIEEN-LICSKYTDLLR 569

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309

 Score = 70.2 bits (171), Expect = 2e-13
 Identities = 54/306 (17%), Positives = 98/306 (32%), Gaps = 51/306 (16%)

Query: 186 LLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL 245
           L   ++ +  + + E L R++I            GL+  K  ++E   + +   +    L
Sbjct: 13  LRAEYEGSGAKEVLEELDRELI------------GLKPVKDRIRETAAL-LLVERARQKL 59

Query: 246 ----LSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASSVVSKWRGDSE 294
                +P   +   G PGTGKT +A  +A          K    +++   +V ++ G + 
Sbjct: 60  GLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTA 119

Query: 295 KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 354
              K + + A       +F+DE   +     E     EA   L   +          D+L
Sbjct: 120 PKTKEVLKRAM---GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVM------ENNRDDL 170

Query: 355 VFVLAA----TNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ-------TGE 403
           V +LA         ++ +     R+   I  P    E    +   +L  Q          
Sbjct: 171 VVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAET 230

Query: 404 ESLPYDLLVERTEGYS-GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRP 462
               Y  L      ++    IR     A ++   RL               L     I  
Sbjct: 231 ALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLF---TASSGPLDARALST---IAE 284

Query: 463 EDVEIA 468
           ED+  +
Sbjct: 285 EDIRAS 290

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456

 Score = 62.7 bits (152), Expect = 1e-10
 Identities = 41/197 (20%), Positives = 69/197 (35%), Gaps = 33/197 (16%)

Query: 220 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE--CKTTF 277
           G ENA+      V + IK  K         + +LL GPPGTGKT LA A+A E   K  F
Sbjct: 41  GQENAREACGVIVEL-IKSKKM------AGRAVLLAGPPGTGKTALALAIAQELGSKVPF 93

Query: 278 FNISASSVVSKWRGDSEKLIKVLFE--LARHHAPSTIFLDEIDAIISQRGEAR------- 328
             +  S V S     +E L++        R      ++  E+  +     E         
Sbjct: 94  CPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKT 153

Query: 329 ----------SEHEASRRLKTELLIQMDGLT-QSDELVFVLAATNLPWELDAAMLRR--- 374
                     ++     +L   +   +     ++ +++++ A +                
Sbjct: 154 ISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEF 213

Query: 375 -LEKRILVPLPDTEARR 390
            LE    VPLP  +  +
Sbjct: 214 DLEAEEYVPLPKGDVHK 230

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Length = 447

 Score = 52.9 bits (128), Expect = 1e-07
 Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 15/72 (20%)

Query: 252 ILLFGPPGTGKTMLAKAVATECKTTFFNISA--SSVVSKWRGDSEKLIKVLFELARHHAP 309
           ++L+GPPGTGKT LA+ +A         ISA  S V         K I+   E AR +  
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGV---------KEIREAIERARQNRN 103

Query: 310 ---STI-FLDEI 317
               TI F+DE+
Sbjct: 104 AGRRTILFVDEV 115

>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} Length = 86

 Score = 46.7 bits (112), Expect = 4e-07
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 379 ILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 438
                P+ EAR  + +           +    + E   G SG++++ V  EA M  LR  
Sbjct: 6   HHHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR-- 63

Query: 439 MVLLEGRQEVAPDD 452
               E R  V  +D
Sbjct: 64  ----ERRVHVTQED 73

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 18/86 (20%)

Query: 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS-----SVVSK----------WRGDSE 294
           +  +L+GPPG GKT  A  VA E        +AS     ++++             G  +
Sbjct: 78  RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFK 137

Query: 295 KLIKVLFELARHHAPSTIFLDEIDAI 320
              +      +H     I +DE+D +
Sbjct: 138 HNEEAQNLNGKHFV---IIMDEVDGM 160

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384

 Score = 47.8 bits (113), Expect = 4e-06
 Identities = 34/233 (14%), Positives = 68/233 (29%), Gaps = 50/233 (21%)

Query: 252 ILLFGPPGTGKTMLAKAVATECKTT-----------FFNISASSVVSKWRGDSEKLIKVL 300
            L  G  GTGKT ++K +  E +                ++   V    +     L   L
Sbjct: 48  NLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKL 107

Query: 301 FELARHHA------------------PSTIFLDEIDAIISQRGEARSEHEASRRLKTELL 342
              +                       + I+LDE+D ++ +RG     ++  R      +
Sbjct: 108 TGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISV 167

Query: 343 IQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 402
           I             +    N+   ++  +L  L   ++    D E  + +          
Sbjct: 168 I------------MISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLI 215

Query: 403 EESLPYD---LLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDD 452
           + +   +    +   +    G D R      A+  L R   L  G   +  + 
Sbjct: 216 KGTYDDEILSYIAAISAKEHG-DAR-----KAVNLLFRAAQLASGGGIIRKEH 262

>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* Length = 83

 Score = 43.4 bits (103), Expect = 5e-06
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 385 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 444
           D   +R +F ++       E +  +  V R +  SG+DI  + +E+ M  +R      E 
Sbjct: 2   DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVR------EN 55

Query: 445 RQEVAPDD 452
           R  V   D
Sbjct: 56  RYIVLAKD 63

>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} Length = 78

 Score = 42.9 bits (102), Expect = 8e-06
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 382 PLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 441
           P P+ EAR  + +           +    + E   G SG++++ V  EA M  LR     
Sbjct: 1   PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR----- 55

Query: 442 LEGRQEVAPDD 452
            E R  V  +D
Sbjct: 56  -ERRVHVTQED 65

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Length = 350

 Score = 43.6 bits (103), Expect = 9e-05
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 12/53 (22%)

Query: 218 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVA 270
           I G E+ K  L    V P        G+     G+L+FG  GTGK+   +A+A
Sbjct: 26  IVGQEDMKLALLLTAVDP--------GI----GGVLVFGDRGTGKSTAVRALA 66

>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B Length = 82

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 408 YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDD 452
            D L+ R +  SG+ I  + +EA ++ +R      + R  +   D
Sbjct: 22  LDSLIIRNDSLSGAVIAAIMQEAGLRAVR------KNRYVILQSD 60

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Length = 180

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 6/38 (15%)

Query: 250 KGILLFGPPGTGKTMLAKAVATEC------KTTFFNIS 281
           KG+   G PG GKT LA A           +  FF+  
Sbjct: 39  KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	496
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	100.0
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	100.0
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	100.0
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	100.0
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	100.0
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	100.0
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	100.0
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	100.0
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	100.0
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	100.0
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	100.0
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	100.0
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	100.0
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	100.0
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	100.0
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	100.0
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	100.0
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	100.0
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	100.0
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	99.98
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	99.97
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.97
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.97
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.96
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.95
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.95
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.94
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.94
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	99.92
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	99.84
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	99.84
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	99.81
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	99.79
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	99.78
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	99.77
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	99.75
3pvs_A	447	Replication-associated recombination protein A; ma	99.73
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	99.73
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	99.72
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	99.71
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	99.71
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	99.71
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.71
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	99.7
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.69
2chq_A	319	Replication factor C small subunit; DNA-binding pr	99.67
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.67
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.66
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	99.66
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.65
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	99.65
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	99.65
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.64
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	99.64
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	99.64
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	99.63
3bos_A	242	Putative DNA replication factor; P-loop containing	99.62
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	99.62
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.61
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	99.6
2r44_A	331	Uncharacterized protein; putative ATPase, structur	99.59
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	99.58
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.58
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	99.57
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	99.56
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	99.56
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.54
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	99.54
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	99.54
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.52
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.52
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	99.52
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.51
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.51
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	99.48
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	99.48
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	99.46
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.45
3co5_A	143	Putative two-component system transcriptional RES	99.44
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	99.26
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	99.22
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	99.21
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.21
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	99.21
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	99.19
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	99.08
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	99.01
3vlf_B	88	26S protease regulatory subunit 7 homolog; heat re	98.97
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.95
3aji_B	83	S6C, proteasome (prosome, macropain) 26S subunit,	98.91
2krk_A	86	26S protease regulatory subunit 8; structural geno	98.9
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.89
3kw6_A	78	26S protease regulatory subunit 8; structural geno	98.82
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.77
2fna_A	357	Conserved hypothetical protein; structural genomic	98.68
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	98.62
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	98.58
2dzn_B	82	26S protease regulatory subunit 6B homolog; ankyri	98.52
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	98.51
2qgz_A	308	Helicase loader, putative primosome component; str	98.48
3f8t_A	506	Predicted ATPase involved in replication control,	98.45
1tue_A	212	Replication protein E1; helicase, replication, E1E	98.39
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.37
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	98.22
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	98.03
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	98.01
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.95
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	97.77
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.76
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.58
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	97.56
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.52
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.48
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.41
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.4
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.39
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	97.38
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.36
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.36
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.33
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.29
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.28
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.27
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.26
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.24
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.23
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.22
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.2
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.19
1via_A	175	Shikimate kinase; structural genomics, transferase	97.18
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.18
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.16
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.14
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.13
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.13
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.13
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.1
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.08
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.06
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.04
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.04
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.03
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.03
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.02
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.01
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.01
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.0
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.99
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.99
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.98
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.98
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.97
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.96
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.96
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.93
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.93
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.93
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.92
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.89
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.89
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.88
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.88
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.87
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.87
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.86
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.86
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.85
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.85
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.85
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.83
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.83
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.82
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.81
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.81
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.8
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.79
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.78
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.72
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.72
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.71
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	96.71
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	96.67
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	96.65
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.63
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.63
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.63
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.61
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.61
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.6
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	96.6
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.6
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.6
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.58
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.57
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.57
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.55
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.54
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.5
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.48
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.46
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.45
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.45
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.44
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.44
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.39
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.36
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.35
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.34
3io5_A	333	Recombination and repair protein; storage dimer, i	96.34
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.32
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.3
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.3
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.3
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.27
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.27
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.22
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.18
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.18
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.17
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.16
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.15
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.13
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.12
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.09
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	96.08
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.04
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.0
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.99
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.99
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	95.98
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.94
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.91
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.91
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.88
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	95.87
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.86
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	95.85
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.85
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	95.81
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	95.8
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	95.77
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.75
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	95.69
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	95.69
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.62
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	95.62
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	95.54
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	95.52
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.42
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.4
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	95.39
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.35
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	95.32
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	95.31
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	95.27
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	95.26
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	95.25
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	95.25
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	95.17
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	95.15
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	95.07
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	95.05
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	95.0
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	94.95
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	94.94
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	94.93
3b6e_A	216	Interferon-induced helicase C domain-containing P;	94.9
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	94.89
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	94.83
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	94.82
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	94.79
3fe2_A	242	Probable ATP-dependent RNA helicase DDX5; DEAD, AD	94.76
2xxa_A	433	Signal recognition particle protein; protein trans	94.72
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	94.66
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	94.63
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	94.6
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	94.59
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	94.58
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	94.57
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	94.53
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	94.48
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	94.45
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	94.43
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	94.37
3iuy_A	228	Probable ATP-dependent RNA helicase DDX53; REC-A-l	94.37
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.35
2og2_A	359	Putative signal recognition particle receptor; nuc	94.35
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	94.26
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	94.25
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	94.13
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	94.07
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	94.04
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	94.02
3oiy_A	414	Reverse gyrase helicase domain; topoisomerase, DNA	94.02
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	93.97
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	93.96
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	93.94
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	93.87
1p9r_A	418	General secretion pathway protein E; bacterial typ	93.82
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	93.81
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	93.77
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	93.77
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	93.76
2ged_A	193	SR-beta, signal recognition particle receptor beta	93.75
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	93.73
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	93.72
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	93.72
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	93.6
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	93.56
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	93.5
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	93.46
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	93.45
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	93.42
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	93.41
1b0u_A	262	Histidine permease; ABC transporter, transport pro	93.39
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	93.26
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	93.23
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	93.19
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	93.17
3kta_A	182	Chromosome segregation protein SMC; structural mai	93.16
1g6h_A	257	High-affinity branched-chain amino acid transport	93.15
2ghi_A	260	Transport protein; multidrug resistance protein, M	93.14
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	93.12
3ice_A	422	Transcription termination factor RHO; transcriptio	93.12
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	93.11
1sgw_A	214	Putative ABC transporter; structural genomics, P p	93.11
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	93.07
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	93.06
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	93.04
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	93.04
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	93.03
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	93.03
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	93.03
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	93.02
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	93.02
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	93.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	92.98
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	92.96
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	92.96
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	92.93
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	92.89
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	92.89
1nrj_B	218	SR-beta, signal recognition particle receptor beta	92.87
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	92.84
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	92.81
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	92.8
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	92.79
2wji_A	165	Ferrous iron transport protein B homolog; membrane	92.73
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	92.69
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	92.67
3dkp_A	245	Probable ATP-dependent RNA helicase DDX52; DEAD, A	92.66
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	92.65
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	92.64
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	92.63
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	92.59
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	92.58
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	92.57
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	92.57
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	92.54
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	92.53
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	92.49
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	92.46
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	92.44
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	92.43
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	92.42
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	92.38
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	92.33
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	92.32
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	92.3
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	92.3
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	92.3
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	92.27
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	92.27
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	92.27
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	92.22
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	92.21
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	92.21
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	92.21
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	92.2
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	92.18
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	92.18
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	92.18
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	92.17
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	92.14
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	92.13
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	92.09
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	92.04
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	92.04
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	92.03
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	92.01
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	91.99
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	91.98
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	91.97
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	91.96
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	91.95
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	91.9
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	91.89
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	91.87
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	91.84
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	91.81
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	91.77
2j0s_A	410	ATP-dependent RNA helicase DDX48; mRNA processing,	91.75
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	91.71
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	91.71
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	91.71
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	91.7
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	91.7
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	91.69
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	91.67
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	91.6
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	91.48
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	91.43
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	91.42
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	91.42
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	91.39
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	91.37
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	91.33
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	91.32
2hf9_A	226	Probable hydrogenase nickel incorporation protein	91.31
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	91.3
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	91.29
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	91.27
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	91.26
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	91.26
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	91.25
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	91.24
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	91.23
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	91.23
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	91.18
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	91.16
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	91.06
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	91.05
2db3_A	434	ATP-dependent RNA helicase VASA; DEAD-BOX, protein	91.02
4ddu_A	1104	Reverse gyrase; topoisomerase, DNA supercoiling, a	91.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	90.99
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	90.95
3fmp_B	479	ATP-dependent RNA helicase DDX19B; nuclear porin,	90.94
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	90.94
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	90.92
3fmo_B	300	ATP-dependent RNA helicase DDX19B; nuclear porin,	90.87
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	90.84
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	90.82
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	90.72
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	90.69
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	90.68
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	90.64
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	90.63
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	90.61
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	90.6
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	90.6
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	90.59
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	90.58
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	90.57
2xzl_A	802	ATP-dependent helicase NAM7; hydrolase-RNA complex	90.56
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	90.54
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	90.53
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	90.45
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	90.45
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	90.44
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	90.44
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	90.41
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	90.41
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	90.36
3eiq_A	414	Eukaryotic initiation factor 4A-I; PDCD4, anti-onc	90.34
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	90.33
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	90.32
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	90.28
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	90.27
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	90.26
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	90.25
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	90.25
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	90.23
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	90.22
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	90.2
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	90.18
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	90.15
3tbk_A	555	RIG-I helicase domain; DECH helicase, ATP binding,	90.14
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	90.05
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	90.02
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	89.99
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	89.92
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	89.91
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	89.83
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	89.82
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	89.8
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	89.79
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	89.79
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	89.75
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	89.74
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	89.73
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	89.7
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	89.68
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	89.67
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	89.67
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	89.59
2fh5_B	214	SR-beta, signal recognition particle receptor beta	89.53
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	89.51
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	89.51
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	89.51
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	89.49

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-46  Score=388.17  Aligned_cols=256  Identities=34%  Similarity=0.553  Sum_probs=232.6

Q ss_pred             hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975          204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA  282 (496)
Q Consensus       204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~  282 (496)
                      +....+.|+++|+||+|++++|+.|++.+.+|+++|+.|... +.+++|+|||||||||||++|+++|++++.+|+.+++
T Consensus       136 ~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~  215 (405)
T 4b4t_J          136 LMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSG  215 (405)
T ss_dssp             SCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred             hccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEh
Confidence            455678899999999999999999999999999999999875 8889999999999999999999999999999999999


Q ss_pred             ccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc-chhHHhhhhhhhhhhhccCccccCcEEEEEecc
Q 010975          283 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAAT  361 (496)
Q Consensus       283 s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatT  361 (496)
                      +++.++|+|++++.++.+|..|+..+||||||||+|.+++.+.... ......++++++||..||++... ..|+||+||
T Consensus       216 s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-~~V~vIaAT  294 (405)
T 4b4t_J          216 AELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS-KNIKIIMAT  294 (405)
T ss_dssp             GGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC-CCEEEEEEE
T ss_pred             HHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC-CCeEEEecc
Confidence            9999999999999999999999999999999999999998875433 23345567889999999998754 458899999


Q ss_pred             CCcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHH
Q 010975          362 NLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM  439 (496)
Q Consensus       362 n~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~  439 (496)
                      |+|+.||++++|  ||++.|++++|+.++|.+||+.++++.....+++++.+|+.|+||||+||..+|++|++.++++  
T Consensus       295 Nrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~--  372 (405)
T 4b4t_J          295 NRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE--  372 (405)
T ss_dssp             SCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT--
T ss_pred             CChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc--
Confidence            999999999999  9999999999999999999999999988888899999999999999999999999999999874  


Q ss_pred             HHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc
Q 010975          440 VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL  478 (496)
Q Consensus       440 ~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~  478 (496)
                          +            ...||++||+.|++++.+...+
T Consensus       373 ----~------------~~~vt~~Df~~Al~~v~~~~~~  395 (405)
T 4b4t_J          373 ----R------------RIHVTQEDFELAVGKVMNKNQE  395 (405)
T ss_dssp             ----T------------CSBCCHHHHHHHHHHHHHHHTC
T ss_pred             ----C------------CCCcCHHHHHHHHHHHhCcccc
Confidence                1            1248999999999998776544

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=100.00  E-value=7.3e-45  Score=406.88  Aligned_cols=288  Identities=34%  Similarity=0.614  Sum_probs=198.2

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS  283 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s  283 (496)
                      +.....|+++|+|++|++++|+.|.+.+.+|+++++.|... ..+++++|||||||||||++|+++|.+++.+|+.++++
T Consensus       466 ~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~  545 (806)
T 3cf2_A          466 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP  545 (806)
T ss_dssp             CCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHH
T ss_pred             cccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccc
Confidence            33445789999999999999999999999999999999876 78899999999999999999999999999999999999


Q ss_pred             cccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCC-cchhHHhhhhhhhhhhhccCccccCcEEEEEeccC
Q 010975          284 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN  362 (496)
Q Consensus       284 ~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn  362 (496)
                      ++.++|+|++++.++.+|+.|+...||||||||||.+++.|+.. ...+...++++++||..||++.... .|+||+|||
T Consensus       546 ~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~-~V~vi~aTN  624 (806)
T 3cf2_A          546 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK-NVFIIGATN  624 (806)
T ss_dssp             HHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS-SEEEECC-C
T ss_pred             hhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC-CEEEEEeCC
Confidence            99999999999999999999999999999999999999887643 3345677899999999999997654 589999999


Q ss_pred             CcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHH
Q 010975          363 LPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV  440 (496)
Q Consensus       363 ~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~  440 (496)
                      +|+.||++++|  ||++.+++++|+.++|.+||+.++++.....+++++.+|+.|+||||+||..+|++|++.++|+.+.
T Consensus       625 ~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~  704 (806)
T 3cf2_A          625 RPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIE  704 (806)
T ss_dssp             CSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC
T ss_pred             CchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999  9999999999999999999999999988888899999999999999999999999999999998764


Q ss_pred             Hhhcccc---C----CCCCCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhccccccc
Q 010975          441 LLEGRQE---V----APDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSE  493 (496)
Q Consensus       441 ~le~~~~---i----~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~~g~~  493 (496)
                      .......   .    ..........+||++||++|+++++||.++ ++.+|++|.+.|+..
T Consensus       705 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~~  765 (806)
T 3cf2_A          705 SEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQS  765 (806)
T ss_dssp             -----------------------CCC----CCTTTC---------------CCCC------
T ss_pred             hhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence            3211110   0    000111123569999999999999999986 589999999988753

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-44  Score=380.92  Aligned_cols=262  Identities=33%  Similarity=0.560  Sum_probs=229.7

Q ss_pred             hhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975          207 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV  285 (496)
Q Consensus       207 ~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l  285 (496)
                      +++.|+++|+||+|++++|+.|++.+.+|+.+|+.|... +.+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus       200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L  279 (467)
T 4b4t_H          200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL  279 (467)
T ss_dssp             EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred             ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence            457899999999999999999999999999999999875 7899999999999999999999999999999999999999


Q ss_pred             cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc-chhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc
Q 010975          286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP  364 (496)
Q Consensus       286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p  364 (496)
                      .++|+|++++.++.+|..|+..+||||||||+|.++..|.... .......+++.++|..||+..... .|+||+|||+|
T Consensus       280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~-~ViVIaATNrp  358 (467)
T 4b4t_H          280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG-NIKVMFATNRP  358 (467)
T ss_dssp             CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT-TEEEEEECSCT
T ss_pred             hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC-cEEEEeCCCCc
Confidence            9999999999999999999999999999999999998876433 333445667788999999886554 48899999999


Q ss_pred             ccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHh
Q 010975          365 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL  442 (496)
Q Consensus       365 ~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~l  442 (496)
                      +.||++++|  ||++.|+|++|+.++|.+||+.+++......+++++.+|+.|+||||+||+.+|++|++.++++-    
T Consensus       359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~----  434 (467)
T 4b4t_H          359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR----  434 (467)
T ss_dssp             TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT----
T ss_pred             ccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence            999999999  99999999999999999999999999888888999999999999999999999999999998851    


Q ss_pred             hccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc--hhhhhhhhc
Q 010975          443 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL--HAHRYEKFN  487 (496)
Q Consensus       443 e~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~--~~~~~~~~~  487 (496)
                        +            ..||++||..|++++.+....  ...+|.+|+
T Consensus       435 --~------------~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n  467 (467)
T 4b4t_H          435 --R------------KVATEKDFLKAVDKVISGYKKFSSTSRYMQYN  467 (467)
T ss_dssp             --C------------SSBCHHHHHHHHHHHHHHHCC-----------
T ss_pred             --C------------CccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence              1            238999999999998776543  357788886

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-44  Score=379.66  Aligned_cols=258  Identities=33%  Similarity=0.547  Sum_probs=233.1

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS  284 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~  284 (496)
                      ...+.|+++|+||+|++++|+.|.+.+.+|+.+|+.|... +++++|+|||||||||||++|+++|++++.+|+.+++++
T Consensus       171 ~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~  250 (434)
T 4b4t_M          171 EVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ  250 (434)
T ss_dssp             EEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred             ccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhh
Confidence            3456799999999999999999999999999999999875 788999999999999999999999999999999999999


Q ss_pred             ccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcch-hHHhhhhhhhhhhhccCccccCcEEEEEeccCC
Q 010975          285 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNL  363 (496)
Q Consensus       285 l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~-~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~  363 (496)
                      +.++|+|++++.++.+|..|+..+||||||||+|.+++.|...... .....+++.+||..||++.... .|+||+|||+
T Consensus       251 l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~-~ViVIaaTNr  329 (434)
T 4b4t_M          251 LVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD-RVKVLAATNR  329 (434)
T ss_dssp             GCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC-SSEEEEECSS
T ss_pred             hhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC-CEEEEEeCCC
Confidence            9999999999999999999999999999999999999887654332 2344567789999999987654 4889999999


Q ss_pred             cccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHH
Q 010975          364 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL  441 (496)
Q Consensus       364 p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~  441 (496)
                      |+.||++++|  ||++.|++++|+.++|.+||+.++++.....+++++.+|+.|+||||+||..+|++|++.++++-   
T Consensus       330 p~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~---  406 (434)
T 4b4t_M          330 VDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG---  406 (434)
T ss_dssp             CCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT---
T ss_pred             chhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC---
Confidence            9999999988  99999999999999999999999998888888899999999999999999999999999998751   


Q ss_pred             hhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccchhhh
Q 010975          442 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHR  482 (496)
Q Consensus       442 le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~~~~  482 (496)
                                     ...||++||..|+++++|+....+.-
T Consensus       407 ---------------~~~i~~~Df~~Al~~v~~~~~~~i~~  432 (434)
T 4b4t_M          407 ---------------QSSVKHEDFVEGISEVQARKSKSVSF  432 (434)
T ss_dssp             ---------------CSSBCHHHHHHHHHSCSSSCCCCCCC
T ss_pred             ---------------CCCcCHHHHHHHHHHHhCCCCcCccc
Confidence                           12489999999999999998765543

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-44  Score=376.52  Aligned_cols=253  Identities=34%  Similarity=0.537  Sum_probs=229.4

Q ss_pred             hhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975          207 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV  285 (496)
Q Consensus       207 ~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l  285 (496)
                      ..+.|+++|+||+|++++|+.|.+.+.+|+.+|++|... +.+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus       173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l  252 (437)
T 4b4t_I          173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL  252 (437)
T ss_dssp             EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred             eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence            456799999999999999999999999999999999876 7888999999999999999999999999999999999999


Q ss_pred             cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc-hhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc
Q 010975          286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP  364 (496)
Q Consensus       286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p  364 (496)
                      .++|+|++++.++.+|..|+..+||||||||+|.+++.|..... ......+++.+||..+|+..... .|+||+|||+|
T Consensus       253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~-~ViVIaATNrp  331 (437)
T 4b4t_I          253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG-DVKVIMATNKI  331 (437)
T ss_dssp             CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS-SEEEEEEESCS
T ss_pred             hhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC-CEEEEEeCCCh
Confidence            99999999999999999999999999999999999988754332 22344567789999999886554 48899999999


Q ss_pred             ccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHh
Q 010975          365 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL  442 (496)
Q Consensus       365 ~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~l  442 (496)
                      +.||+|++|  ||++.|+|++|+.++|.+||+.++++.....+++++.+|+.|+||||+||+.+|++|++.++++-    
T Consensus       332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~----  407 (437)
T 4b4t_I          332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER----  407 (437)
T ss_dssp             TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT----
T ss_pred             hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence            999999999  99999999999999999999999999888888999999999999999999999999999988741    


Q ss_pred             hccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc
Q 010975          443 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL  478 (496)
Q Consensus       443 e~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~  478 (496)
                                    ...||++||..|++++.|+..+
T Consensus       408 --------------~~~It~eDf~~Al~rv~~~~~~  429 (437)
T 4b4t_I          408 --------------RMQVTAEDFKQAKERVMKNKVE  429 (437)
T ss_dssp             --------------CSCBCHHHHHHHHHHHHHHHCC
T ss_pred             --------------CCccCHHHHHHHHHHHhCCCCh
Confidence                          1248999999999999887654

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.2e-44  Score=375.65  Aligned_cols=254  Identities=34%  Similarity=0.595  Sum_probs=228.9

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS  283 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s  283 (496)
                      ....+.|+++|+||+|++++|+.|.+.+.+|+.+|+.|... +.+++|+|||||||||||++|+++|++++.+|+.++++
T Consensus       170 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s  249 (437)
T 4b4t_L          170 MTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS  249 (437)
T ss_dssp             CEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred             eeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehh
Confidence            34456799999999999999999999999999999999876 88899999999999999999999999999999999999


Q ss_pred             cccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc-hhHHhhhhhhhhhhhccCccccCcEEEEEeccC
Q 010975          284 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATN  362 (496)
Q Consensus       284 ~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn  362 (496)
                      ++.++|.|++++.++.+|..|+..+||||||||+|.+++.|..... ......+++.+||..||++.... .|+||+|||
T Consensus       250 ~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~-~vivI~ATN  328 (437)
T 4b4t_L          250 GIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG-QTKIIMATN  328 (437)
T ss_dssp             GTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT-SSEEEEEES
T ss_pred             hhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC-CeEEEEecC
Confidence            9999999999999999999999999999999999999988754332 23345667889999999987654 478999999


Q ss_pred             CcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHH
Q 010975          363 LPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV  440 (496)
Q Consensus       363 ~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~  440 (496)
                      +|+.||++++|  ||++.|+|++|+.++|.+||+.++.+.....+.+++.+|+.|+||||+||..+|++|++.++++   
T Consensus       329 rp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~---  405 (437)
T 4b4t_L          329 RPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD---  405 (437)
T ss_dssp             STTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT---
T ss_pred             CchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc---
Confidence            99999999998  6999999999999999999999999888888889999999999999999999999999998874   


Q ss_pred             HhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCcc
Q 010975          441 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH  477 (496)
Q Consensus       441 ~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~  477 (496)
                         ++            ..||++||..|++++.|+..
T Consensus       406 ---~~------------~~i~~~d~~~Al~~v~~~~k  427 (437)
T 4b4t_L          406 ---DR------------DHINPDDLMKAVRKVAEVKK  427 (437)
T ss_dssp             ---TC------------SSBCHHHHHHHHHHHHHTCC
T ss_pred             ---CC------------CCCCHHHHHHHHHHHHhccC
Confidence               11            24899999999999988754

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-43  Score=367.66  Aligned_cols=253  Identities=36%  Similarity=0.605  Sum_probs=227.7

Q ss_pred             hhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975          207 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV  285 (496)
Q Consensus       207 ~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l  285 (496)
                      ..+.|+++|+||+|++++|+.|.+.+.+|+.+|++|... +.+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus       163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l  242 (428)
T 4b4t_K          163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF  242 (428)
T ss_dssp             EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred             CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence            456799999999999999999999999999999999875 8889999999999999999999999999999999999999


Q ss_pred             cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc-hhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc
Q 010975          286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP  364 (496)
Q Consensus       286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p  364 (496)
                      .++|.|++++.++.+|..|+..+||||||||+|.+++.|..... .....++++++||..||++.... .|+||+|||+|
T Consensus       243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~-~v~vI~aTN~~  321 (428)
T 4b4t_K          243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST-NVKVIMATNRA  321 (428)
T ss_dssp             CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC-SEEEEEEESCS
T ss_pred             hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC-CEEEEEecCCh
Confidence            99999999999999999999999999999999999998754332 23345678899999999987654 48899999999


Q ss_pred             ccccHHHHH--Hhhhhhccc-CCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHH
Q 010975          365 WELDAAMLR--RLEKRILVP-LPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL  441 (496)
Q Consensus       365 ~~Ld~aL~r--Rf~~~I~~~-~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~  441 (496)
                      +.||++++|  ||++.|++| +|+.++|..||+.++++.....+.+++.+|..|+||||+||..+|++|++.++++-   
T Consensus       322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~---  398 (428)
T 4b4t_K          322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN---  398 (428)
T ss_dssp             SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred             hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC---
Confidence            999999999  999999996 89999999999999998888888999999999999999999999999999998751   


Q ss_pred             hhccccCCCCCCCCCCCCCCchhHHHHhhc-CCCCccc
Q 010975          442 LEGRQEVAPDDELPQIGPIRPEDVEIALKN-TRPSAHL  478 (496)
Q Consensus       442 le~~~~i~~~~~~~~~~~It~eDf~~Al~~-~~Ps~~~  478 (496)
                         +            ..|+++||++|+.. ++++.+.
T Consensus       399 ---~------------~~i~~~d~~~A~~~~~~~~~~~  421 (428)
T 4b4t_K          399 ---R------------YVILQSDLEEAYATQVKTDNTV  421 (428)
T ss_dssp             ---C------------SSBCHHHHHHHHHHHSCSCCCS
T ss_pred             ---C------------CCCCHHHHHHHHHHhhCccCCc
Confidence               1            24899999999976 5666553

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=100.00  E-value=6.3e-42  Score=348.73  Aligned_cols=285  Identities=47%  Similarity=0.813  Sum_probs=245.2

Q ss_pred             hCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-cceeeeeeccccc
Q 010975          208 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSVV  286 (496)
Q Consensus       208 ~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-~~~~i~v~~s~l~  286 (496)
                      .+.|+++|+||+|++++|+.|.+.+.+|+++++.+.....+++++||+||||||||++|+++|+++ +.+++.++++++.
T Consensus         4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~   83 (322)
T 1xwi_A            4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV   83 (322)
T ss_dssp             EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred             ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence            456889999999999999999999999999999998777788999999999999999999999999 8999999999999


Q ss_pred             ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccc
Q 010975          287 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE  366 (496)
Q Consensus       287 ~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~  366 (496)
                      +.+.|..++.++.+|..++..+|+||||||+|.+.+.++..  .....+++.++++..++++......++||++||.|+.
T Consensus        84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~  161 (322)
T 1xwi_A           84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWV  161 (322)
T ss_dssp             CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC--CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTT
T ss_pred             hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc--cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCccc
Confidence            99999999999999999999999999999999998876543  3445678889999999988665667899999999999


Q ss_pred             ccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcc
Q 010975          367 LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR  445 (496)
Q Consensus       367 Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~  445 (496)
                      +|++++|||+..+.+++|+.++|.+|++.++...... .+.+++.+++.+.||+++||..+|++|++.++++......-.
T Consensus       162 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~  241 (322)
T 1xwi_A          162 LDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFK  241 (322)
T ss_dssp             SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEE
T ss_pred             CCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            9999999999999999999999999999998876553 455678899999999999999999999999999876431100


Q ss_pred             -----cc------------C-CCC-------------CCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhccccccc
Q 010975          446 -----QE------------V-APD-------------DELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSE  493 (496)
Q Consensus       446 -----~~------------i-~~~-------------~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~~g~~  493 (496)
                           ..            . .+.             .......+||++||..|++.++||.+. ++..|++|++.||++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~  321 (322)
T 1xwi_A          242 KVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQE  321 (322)
T ss_dssp             EEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTTCSC
T ss_pred             hhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHccC
Confidence                 00            0 000             000012479999999999999999986 589999999999986


Q ss_pred             c
Q 010975          494 I  494 (496)
Q Consensus       494 ~  494 (496)
                      .
T Consensus       322 ~  322 (322)
T 1xwi_A          322 G  322 (322)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=100.00  E-value=1.1e-41  Score=346.26  Aligned_cols=289  Identities=48%  Similarity=0.794  Sum_probs=245.3

Q ss_pred             hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc
Q 010975          204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS  283 (496)
Q Consensus       204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s  283 (496)
                      ..+..+.|+++|++++|++++|+.|.+.+..++.+++.+.....+++++||+||||||||++|+++|++++.+++.++++
T Consensus         6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~   85 (322)
T 3eie_A            6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS   85 (322)
T ss_dssp             CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred             cceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH
Confidence            34566789999999999999999999999999999999888888889999999999999999999999999999999999


Q ss_pred             cccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCC
Q 010975          284 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL  363 (496)
Q Consensus       284 ~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~  363 (496)
                      ++.+.+.|..+..++.+|..++..+|+||||||+|.+.+.+...  .....+++.++++..+++.......++||+|||.
T Consensus        86 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~  163 (322)
T 3eie_A           86 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI  163 (322)
T ss_dssp             HHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC
T ss_pred             HHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC--cchHHHHHHHHHHHHhccccccCCceEEEEecCC
Confidence            99999999999999999999999999999999999998765432  3345577888999999988666677999999999


Q ss_pred             cccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHh
Q 010975          364 PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL  442 (496)
Q Consensus       364 p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~l  442 (496)
                      ++.+|++++|||+..+.+++|+.++|.+|++.++...... .+.+++.+++.++||+++||..+|++|++.++++..+..
T Consensus       164 ~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~  243 (322)
T 3eie_A          164 PWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT  243 (322)
T ss_dssp             GGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCE
T ss_pred             hhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999876654 455678899999999999999999999999999987643


Q ss_pred             hccccC------------CC-------------CCCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhcccccccc
Q 010975          443 EGRQEV------------AP-------------DDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSEI  494 (496)
Q Consensus       443 e~~~~i------------~~-------------~~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~~g~~~  494 (496)
                      ......            .+             ........+||++||..|++.++|+++. ++.+|++|++.||++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~~  321 (322)
T 3eie_A          244 HFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQEG  321 (322)
T ss_dssp             EEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC---
T ss_pred             hhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCC
Confidence            211100            00             0011123579999999999999999886 5899999999999864

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=100.00  E-value=8.7e-41  Score=344.71  Aligned_cols=296  Identities=48%  Similarity=0.783  Sum_probs=232.2

Q ss_pred             HHHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce
Q 010975          197 ALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT  276 (496)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~  276 (496)
                      .+.+.+...+....|+++|+||+|++++++.|.+.+.+++.+++.+.....+++++||+||||||||++|+++|++++.+
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~  111 (355)
T 2qp9_X           32 KLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST  111 (355)
T ss_dssp             ---------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred             HHHHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            33444556666778999999999999999999999999999999988877888999999999999999999999999999


Q ss_pred             eeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEE
Q 010975          277 FFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF  356 (496)
Q Consensus       277 ~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi  356 (496)
                      ++.++++++.+.+.|..+..++.+|..+....|+||||||+|.+.+.+...  .....+++.++|+..++++......++
T Consensus       112 ~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~  189 (355)
T 2qp9_X          112 FFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVL  189 (355)
T ss_dssp             EEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred             EEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC--cchHHHHHHHHHHHHhhcccccCCCeE
Confidence            999999999999999999999999999998899999999999998765433  344567788999999998766566799


Q ss_pred             EEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcchhhhccHH
Q 010975          357 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPL  435 (496)
Q Consensus       357 VIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~  435 (496)
                      ||++||.++.++++++|||+..+.+++|+.++|.+|++.++...... .+.+++.+++.+.||+++||..+|++|++.++
T Consensus       190 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~  269 (355)
T 2qp9_X          190 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPI  269 (355)
T ss_dssp             EEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999876543 45567889999999999999999999999999


Q ss_pred             HHHHHHhhcccc------------CCCC-------------CCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhccc
Q 010975          436 RRLMVLLEGRQE------------VAPD-------------DELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNAD  489 (496)
Q Consensus       436 rR~~~~le~~~~------------i~~~-------------~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~  489 (496)
                      ++......-...            ..+.             .......+||++||..|++.++||++. ++..|++|.+.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~  349 (355)
T 2qp9_X          270 RKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRD  349 (355)
T ss_dssp             HHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            987643110000            0000             000123569999999999999999986 58999999999


Q ss_pred             ccccc
Q 010975          490 YGSEI  494 (496)
Q Consensus       490 ~g~~~  494 (496)
                      ||++.
T Consensus       350 ~~~~~  354 (355)
T 2qp9_X          350 FGQEG  354 (355)
T ss_dssp             TC---
T ss_pred             hccCC
Confidence            99874

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=100.00  E-value=7.5e-40  Score=347.40  Aligned_cols=293  Identities=47%  Similarity=0.798  Sum_probs=237.7

Q ss_pred             HHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-ccee
Q 010975          199 AESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTF  277 (496)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-~~~~  277 (496)
                      .+.+...+....|+++|+||+|++.+++.|.+.+.+|+.+++.+.....+++++||+||||||||++|+++|+++ +.++
T Consensus       117 ~~~~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~  196 (444)
T 2zan_A          117 QNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF  196 (444)
T ss_dssp             -------CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEE
T ss_pred             HHHhhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCE
Confidence            334455667788999999999999999999999999999999988767778999999999999999999999999 8999


Q ss_pred             eeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEE
Q 010975          278 FNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV  357 (496)
Q Consensus       278 i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV  357 (496)
                      +.++++++.+.+.|..+..++.+|..+....|+||||||||.+.+.+...  .....+++.++|+..++++......++|
T Consensus       197 ~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~v~v  274 (444)
T 2zan_A          197 FSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILV  274 (444)
T ss_dssp             EEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC--CCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred             EEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc--cccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence            99999999999999999999999999999999999999999998765543  3445678889999999988655667899


Q ss_pred             EeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcchhhhccHHH
Q 010975          358 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR  436 (496)
Q Consensus       358 IatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~r  436 (496)
                      |+|||.++.++++++|||+..+.+++|+.++|..|++.++...... .+.+++.+++.++||+++||..+|++|++.+++
T Consensus       275 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r  354 (444)
T 2zan_A          275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVR  354 (444)
T ss_dssp             EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHH
T ss_pred             EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998776543 455678899999999999999999999999999


Q ss_pred             HHHHHh--hccccC------------------------------CCCCCCCCCCCCCchhHHHHhhcCCCCccc-hhhhh
Q 010975          437 RLMVLL--EGRQEV------------------------------APDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRY  483 (496)
Q Consensus       437 R~~~~l--e~~~~i------------------------------~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~  483 (496)
                      +.....  ......                              .+.+. ....+||++||..|++.++||.+. ++..|
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~df~~a~~~~~ps~~~~~~~~~  433 (444)
T 2zan_A          355 KVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDK-LLEPVVSMWDMLRSLSSTKPTVNEQDLLKL  433 (444)
T ss_dssp             HHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTC-BCCCCEEHHHHHHHHHTCCCSCCHHHHHHH
T ss_pred             HHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhh-ccCCccCHHHHHHHHHhCCCCCCHHHHHHH
Confidence            876531  000000                              00000 113479999999999999999986 58999


Q ss_pred             hhhcccccccc
Q 010975          484 EKFNADYGSEI  494 (496)
Q Consensus       484 ~~~~~~~g~~~  494 (496)
                      ++|++.||++.
T Consensus       434 ~~~~~~~~~~~  444 (444)
T 2zan_A          434 KKFTEDFGQEG  444 (444)
T ss_dssp             HHHTSSCTTTC
T ss_pred             HHHHHHHcCCC
Confidence            99999999863

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=100.00  E-value=7.7e-40  Score=366.33  Aligned_cols=280  Identities=33%  Similarity=0.525  Sum_probs=243.1

Q ss_pred             CCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc
Q 010975          209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS  287 (496)
Q Consensus       209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~  287 (496)
                      ..|.++|+||+|++++|+.|++.+..|+++|+.|..+ ..+++|||||||||||||++|+++|++++.+++.++++++.+
T Consensus       197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s  276 (806)
T 3cf2_A          197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS  276 (806)
T ss_dssp             CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred             cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence            4578999999999999999999999999999999886 789999999999999999999999999999999999999999


Q ss_pred             cccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccc
Q 010975          288 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL  367 (496)
Q Consensus       288 ~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~L  367 (496)
                      +|.|+++..++.+|+.|+.++|+||||||+|.+++.+....  .+..++++++|+..|+++..+. .|+||++||+++.+
T Consensus       277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~--~~~~~riv~~LL~~mdg~~~~~-~V~VIaaTN~~d~L  353 (806)
T 3cf2_A          277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQRA-HVIVMAATNRPNSI  353 (806)
T ss_dssp             SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC--CTTHHHHHHHHHTHHHHCCGGG-CEEEEEECSSTTTS
T ss_pred             ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC--ChHHHHHHHHHHHHHhcccccC-CEEEEEecCChhhc
Confidence            99999999999999999999999999999999998876543  3445788999999999986654 58899999999999


Q ss_pred             cHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcc
Q 010975          368 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR  445 (496)
Q Consensus       368 d~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~  445 (496)
                      |++++|  ||++.|+++.|+.++|.+||+.+++......++++..+|..|.||+++||..+|++|++.+++|........
T Consensus       354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~  433 (806)
T 3cf2_A          354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE  433 (806)
T ss_dssp             CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred             CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Confidence            999999  999999999999999999999999998888899999999999999999999999999999999987655433


Q ss_pred             ccCCCCCCCCCCCCCCchhHHHHhhcCCCCccchh---hhhhhhcccccc
Q 010975          446 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA---HRYEKFNADYGS  492 (496)
Q Consensus       446 ~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~~---~~~~~~~~~~g~  492 (496)
                      ......+. .....++++||..|++.++|+...+.   ..-..|....|.
T Consensus       434 ~~~~~~e~-~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl  482 (806)
T 3cf2_A          434 DETIDAEV-MNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGL  482 (806)
T ss_dssp             CCCCSHHH-HHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSC
T ss_pred             ccccchhh-hccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCH
Confidence            22111111 11235899999999999999976532   233455555443

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=100.00  E-value=8e-39  Score=322.46  Aligned_cols=286  Identities=34%  Similarity=0.621  Sum_probs=239.9

Q ss_pred             hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975          204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA  282 (496)
Q Consensus       204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~  282 (496)
                      |+.....|+++|+|++|++++++.|.+.+..++.+++.+... +.+++++||+||||||||++|+++|++++.+++.+++
T Consensus         3 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~   82 (301)
T 3cf0_A            3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG   82 (301)
T ss_dssp             CCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred             ccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence            566677899999999999999999999999999999888765 6778899999999999999999999999999999999


Q ss_pred             ccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc-hhHHhhhhhhhhhhhccCccccCcEEEEEecc
Q 010975          283 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAAT  361 (496)
Q Consensus       283 s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatT  361 (496)
                      +++.+.+.|..+..++.+|..+....|+||||||+|.+...++.... ......+++.+|+..++++... ..++||+||
T Consensus        83 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-~~v~vi~at  161 (301)
T 3cf0_A           83 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK-KNVFIIGAT  161 (301)
T ss_dssp             HHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT-SSEEEEEEE
T ss_pred             HHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC-CCEEEEEec
Confidence            99999999999999999999999999999999999999987653211 1223456678899999877543 458899999


Q ss_pred             CCcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHH
Q 010975          362 NLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM  439 (496)
Q Consensus       362 n~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~  439 (496)
                      |.++.+|++++|  ||+..++++.|+.++|.+|++.++.......+.+++.++..+.||+|+||..+|++|+..++++.+
T Consensus       162 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~  241 (301)
T 3cf0_A          162 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI  241 (301)
T ss_dssp             SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998  999999999999999999999999887777778888899999999999999999999999998866


Q ss_pred             HHhhccccC-------CCCCCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhcccc
Q 010975          440 VLLEGRQEV-------APDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADY  490 (496)
Q Consensus       440 ~~le~~~~i-------~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~~  490 (496)
                      .........       ...+......+|+++||..|++.++|+.+. ++..|++|.+.|
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~  300 (301)
T 3cf0_A          242 ESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL  300 (301)
T ss_dssp             HHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred             HhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence            432111000       000001112469999999999999999986 589999999877

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=100.00  E-value=1.8e-37  Score=310.22  Aligned_cols=289  Identities=46%  Similarity=0.766  Sum_probs=232.8

Q ss_pred             HHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhccee
Q 010975          198 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF  277 (496)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~  277 (496)
                      +++.+++++....++.+|++++|++++++.|.+.+..+..+++.+.....+++++||+||||||||++|+++|++++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~   82 (297)
T 3b9p_A            3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF   82 (297)
T ss_dssp             HHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence            56677788888999999999999999999999999999999988877767788999999999999999999999999999


Q ss_pred             eeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcccc--CcEE
Q 010975          278 FNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS--DELV  355 (496)
Q Consensus       278 i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~--~~~v  355 (496)
                      +.++++++.+.+.|..+..++.+|..+....|+||||||+|.+...++..  .......+.+.++..+++....  ...+
T Consensus        83 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~~v  160 (297)
T 3b9p_A           83 LNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS--EHEASRRLKTEFLVEFDGLPGNPDGDRI  160 (297)
T ss_dssp             EEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-------CCSHHHHHHHHHHHHHCC------CE
T ss_pred             EEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC--cchHHHHHHHHHHHHHhcccccCCCCcE
Confidence            99999999999999999999999999999899999999999997765432  1223455667788888766432  2458


Q ss_pred             EEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcchhhhccH
Q 010975          356 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQP  434 (496)
Q Consensus       356 iVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a  434 (496)
                      +||++||.++.+++++++||+..+.+++|+.++|..|++.++...... .+..++.+++.+.|++++++..++++|+..+
T Consensus       161 ~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a  240 (297)
T 3b9p_A          161 VVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEP  240 (297)
T ss_dssp             EEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHH
T ss_pred             EEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999988765432 2334677899999999999999999999999


Q ss_pred             HHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhcccccccc
Q 010975          435 LRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSEI  494 (496)
Q Consensus       435 ~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~~g~~~  494 (496)
                      +++..+......      ......+||.+||..|++.++|+... .+..|++|.+.||+.-
T Consensus       241 ~r~~~~~~~~~~------~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~~  295 (297)
T 3b9p_A          241 IRELNVEQVKCL------DISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGDIT  295 (297)
T ss_dssp             HHTCC--------------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC-------
T ss_pred             HHHHhhhhcccc------cccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCee
Confidence            886433221111      11123469999999999999999876 5799999999999754

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.8e-37  Score=318.54  Aligned_cols=288  Identities=43%  Similarity=0.757  Sum_probs=238.9

Q ss_pred             HHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhccee
Q 010975          198 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF  277 (496)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~  277 (496)
                      ..+.+.+++....++.+|++++|++.+++.|.+.+..++.+++.+.....+++++||+||||||||++|+++|++++.++
T Consensus        66 ~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~  145 (357)
T 3d8b_A           66 MIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATF  145 (357)
T ss_dssp             HHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence            34556678888899999999999999999999999999999998877777789999999999999999999999999999


Q ss_pred             eeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccc-cCcEEE
Q 010975          278 FNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVF  356 (496)
Q Consensus       278 i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-~~~~vi  356 (496)
                      +.++++++.+.+.|..+..++.+|..+....|+||||||||.+...+...  ......++++.++..+++... ....++
T Consensus       146 ~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~~v~  223 (357)
T 3d8b_A          146 FSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG--EHESSRRIKTEFLVQLDGATTSSEDRIL  223 (357)
T ss_dssp             EEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred             EEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC--cchHHHHHHHHHHHHHhcccccCCCCEE
Confidence            99999999999999999999999999998889999999999998765432  234456778888888887653 345688


Q ss_pred             EEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcchhhhccHH
Q 010975          357 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPL  435 (496)
Q Consensus       357 VIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~  435 (496)
                      ||++||.++.+++++++||...+.++.|+.++|.++++.++...... .+.+++.+++.+.||+++||..+|++|+..++
T Consensus       224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~i  303 (357)
T 3d8b_A          224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPI  303 (357)
T ss_dssp             EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHH
T ss_pred             EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999889999999999999999988665433 23456778999999999999999999999998


Q ss_pred             HHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhccccccc
Q 010975          436 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSE  493 (496)
Q Consensus       436 rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~~g~~  493 (496)
                      +++.+.....  +..    ....+|+++||..|++.++|+... ++..|++|.+.||+.
T Consensus       304 r~l~~~~~~~--~~~----~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~~  356 (357)
T 3d8b_A          304 RSLQTADIAT--ITP----DQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCG  356 (357)
T ss_dssp             HHCCC----------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSCC
T ss_pred             HHhhhhhhcc--ccc----cccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence            8643221111  111    123569999999999999999885 589999999999985

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=100.00  E-value=3.4e-36  Score=313.62  Aligned_cols=286  Identities=43%  Similarity=0.706  Sum_probs=228.6

Q ss_pred             HHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          201 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       201 ~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      .+.+++...+++++|++++|++.+++.|.+.+..+..+++.+.....+++++||+||||||||++|+++|++++.+|+.+
T Consensus       100 ~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v  179 (389)
T 3vfd_A          100 LIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNI  179 (389)
T ss_dssp             TGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence            34567778889999999999999999999999999999998887777789999999999999999999999999999999


Q ss_pred             ecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcccc-CcEEEEEe
Q 010975          281 SASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS-DELVFVLA  359 (496)
Q Consensus       281 ~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~-~~~viVIa  359 (496)
                      +++++.+.+.|..+..++.+|..+....|+||||||||.+...+...  ......+++..|+..+++.... ...++||+
T Consensus       180 ~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~  257 (389)
T 3vfd_A          180 SAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG--EHDASRRLKTEFLIEFDGVQSAGDDRVLVMG  257 (389)
T ss_dssp             CSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC----------CTHHHHHHHHHHHHHHHC-----CEEEEE
T ss_pred             eHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc--cchHHHHHHHHHHHHhhcccccCCCCEEEEE
Confidence            99999999999999999999999999999999999999997665432  2334567778888888876542 45688999


Q ss_pred             ccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcchhhhccHHHHH
Q 010975          360 ATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL  438 (496)
Q Consensus       360 tTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~  438 (496)
                      |||.++.++++++|||...+.++.|+.++|.+|++.++...... .+..+..+++.+.|+++++|..++++|+..+++++
T Consensus       258 atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel  337 (389)
T 3vfd_A          258 ATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIREL  337 (389)
T ss_dssp             EESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTS
T ss_pred             ecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999889999999999999999998775443 23356778999999999999999999999998874


Q ss_pred             HHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhcccccccc
Q 010975          439 MVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSEI  494 (496)
Q Consensus       439 ~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~~g~~~  494 (496)
                      .+......      .......|+.+||..+++.++|+... .+..|++|.+.||+..
T Consensus       338 ~~~~~~~~------~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~~~  388 (389)
T 3vfd_A          338 KPEQVKNM------SASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDTT  388 (389)
T ss_dssp             CCC---CC------SSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC---
T ss_pred             hhhhhhcc------chhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCcc
Confidence            33222111      11223469999999999999999886 5899999999999864

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=100.00  E-value=1e-35  Score=296.43  Aligned_cols=261  Identities=33%  Similarity=0.566  Sum_probs=204.7

Q ss_pred             CCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc
Q 010975          209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS  287 (496)
Q Consensus       209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~  287 (496)
                      ..|+++|+||+|++++|+.|.+.+.++..+++.+... +..++|++|+||||||||++++++|.+++..++.+++.++.+
T Consensus         3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~   82 (274)
T 2x8a_A            3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN   82 (274)
T ss_dssp             ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred             CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence            3578899999999999999999999999999888776 677788999999999999999999999999999999999988


Q ss_pred             cccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccc
Q 010975          288 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL  367 (496)
Q Consensus       288 ~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~L  367 (496)
                      .+.|+.++.++.+|+.+....|+++|+||+|.+...+...  ......++.++++..|++...+ ..++++++||+|+.+
T Consensus        83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~--~~~~~~~~~~~~l~~Lsgg~~~-~~~i~ia~tn~p~~L  159 (274)
T 2x8a_A           83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR--ETGASVRVVNQLLTEMDGLEAR-QQVFIMAATNRPDII  159 (274)
T ss_dssp             STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----------CTTHHHHHHHHHHTCCST-TCEEEEEEESCGGGS
T ss_pred             hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC--cchHHHHHHHHHHHhhhccccc-CCEEEEeecCChhhC
Confidence            8888889999999999988889999999999986554321  1223356678888999887544 457899999999999


Q ss_pred             cHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCC---CCCCCCCcceeeecc--cCCcCCchhhcchhhhccHHHHHHH
Q 010975          368 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQ---TGEESLPYDLLVERT--EGYSGSDIRLVSKEAAMQPLRRLMV  440 (496)
Q Consensus       368 d~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~---~~~~~~~l~~la~~t--~g~s~~dI~~l~~~A~~~a~rR~~~  440 (496)
                      |++++|  ||++.+++++|+.++|.+|++.+++..   ....+.+++.++..+  +||+|+||..+|++|++.++++...
T Consensus       160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~  239 (274)
T 2x8a_A          160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA  239 (274)
T ss_dssp             CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence            999999  999999999999999999999998653   234577788898874  5999999999999999999987543


Q ss_pred             HhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccch
Q 010975          441 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH  479 (496)
Q Consensus       441 ~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~  479 (496)
                      .....       .......|+++||++|+++++||.+.+
T Consensus       240 ~~~~~-------~~~~~~~i~~~df~~al~~~~ps~~~~  271 (274)
T 2x8a_A          240 RQKSG-------NEKGELKVSHKHFEEAFKKVRSSISKK  271 (274)
T ss_dssp             -----------------CCBCHHHHHHHHTTCCCCC---
T ss_pred             hcccc-------ccccCCeecHHHHHHHHHHhcCCCChh
Confidence            21100       001123699999999999999998754

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=8.9e-34  Score=281.51  Aligned_cols=269  Identities=35%  Similarity=0.561  Sum_probs=215.6

Q ss_pred             hCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975          208 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV  286 (496)
Q Consensus       208 ~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~  286 (496)
                      ...|+.+|++++|++++++.|.+.+..++.+++.+... ..+++++||+||||||||++|+++|++++.+++.++++++.
T Consensus         9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~   88 (285)
T 3h4m_A            9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV   88 (285)
T ss_dssp             ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred             cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence            35678899999999999999999999988888877665 56778999999999999999999999999999999999999


Q ss_pred             ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcch-hHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc
Q 010975          287 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW  365 (496)
Q Consensus       287 ~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~-~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~  365 (496)
                      +.+.|..+..++.+|..+....|+||||||+|.+.+.+.+.... .......+..++..+++.... ..++||+|||.++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-~~~~vI~ttn~~~  167 (285)
T 3h4m_A           89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR-GDVKIIGATNRPD  167 (285)
T ss_dssp             CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS-SSEEEEEECSCGG
T ss_pred             HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC-CCEEEEEeCCCch
Confidence            99999999999999999999999999999999998776543221 222344556667777665443 3588999999999


Q ss_pred             cccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhh
Q 010975          366 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE  443 (496)
Q Consensus       366 ~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le  443 (496)
                      .+++++++  ||+..+.++.|+.++|.+|++.++.......+.++..++..+.|+++++|+.++++|...++++.     
T Consensus       168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~-----  242 (285)
T 3h4m_A          168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL-----  242 (285)
T ss_dssp             GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred             hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence            99999999  99999999999999999999999988777777888999999999999999999999998877641     


Q ss_pred             ccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc---hhhhhhhhccccccccc
Q 010975          444 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL---HAHRYEKFNADYGSEIL  495 (496)
Q Consensus       444 ~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~---~~~~~~~~~~~~g~~~~  495 (496)
                                   ...||.+||.+|++.+.+....   .-..|..|...||++.+
T Consensus       243 -------------~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (285)
T 3h4m_A          243 -------------RDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHHHHH  284 (285)
T ss_dssp             -------------CSSBCHHHHHHHHHHHHHHHCCC-------------------
T ss_pred             -------------cCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhccCCC
Confidence                         1248999999999998765443   35889999999998754

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=99.98  E-value=3.6e-34  Score=306.84  Aligned_cols=280  Identities=33%  Similarity=0.533  Sum_probs=227.9

Q ss_pred             CCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccc
Q 010975          211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW  289 (496)
Q Consensus       211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~  289 (496)
                      +..+|++++|++.++++|.+.+..++.+++.+... ..+++++||+||||||||++|+++|++++.+|+.++++++.+.+
T Consensus       199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~  278 (489)
T 3hu3_A          199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL  278 (489)
T ss_dssp             TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred             CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence            56789999999999999999999999999988876 67788999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccH
Q 010975          290 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA  369 (496)
Q Consensus       290 ~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~  369 (496)
                      .|+.+..++.+|..+....|++|||||||.+.+.++...  .+...+++..|+..+++.... ..++||+|||.++.+++
T Consensus       279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~--~~~~~~~~~~LL~~ld~~~~~-~~v~vIaaTn~~~~Ld~  355 (489)
T 3hu3_A          279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSIDP  355 (489)
T ss_dssp             TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCC--CHHHHHHHHHHHHHHHHSCTT-SCEEEEEEESCGGGBCG
T ss_pred             cchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccccc--chHHHHHHHHHHHHhhccccC-CceEEEEecCCccccCH
Confidence            999999999999999999999999999999988765432  345577889999999876544 45889999999999999


Q ss_pred             HHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcccc
Q 010975          370 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE  447 (496)
Q Consensus       370 aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~  447 (496)
                      ++++  ||...+.++.|+.++|.+|++.++.......+.++..++..+.||+++||..++++|+..++++....++....
T Consensus       356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~  435 (489)
T 3hu3_A          356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE  435 (489)
T ss_dssp             GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred             HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            9998  99999999999999999999999998888878888999999999999999999999999998875433221111


Q ss_pred             CCCCCCCCCCCCCCchhHHHHhhcCCCCccchh---hhhhhhcccccccc
Q 010975          448 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA---HRYEKFNADYGSEI  494 (496)
Q Consensus       448 i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~~---~~~~~~~~~~g~~~  494 (496)
                      .... .......||++||..|++.++|+...+.   ..-..|.+..|-+-
T Consensus       436 ~~~~-~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~  484 (489)
T 3hu3_A          436 TIDA-EVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSH  484 (489)
T ss_dssp             SCCH-HHHHHCCBCHHHHHHHHTSHHHHHHHGGGC---------------
T ss_pred             ccch-hhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCcc
Confidence            1000 0012246999999999999999988653   56688999888553

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=99.97  E-value=1.6e-31  Score=262.01  Aligned_cols=247  Identities=33%  Similarity=0.515  Sum_probs=204.3

Q ss_pred             hCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975          208 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV  286 (496)
Q Consensus       208 ~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~  286 (496)
                      ...++.+|+|++|++++++.+.+.+.. +.+++.+... ...+++++|+||||||||++|+++|++++.+++.++++++.
T Consensus         4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~   82 (257)
T 1lv7_A            4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV   82 (257)
T ss_dssp             ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred             ccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHH
Confidence            456788999999999999999987754 4555555443 55678999999999999999999999999999999999999


Q ss_pred             ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc-hhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc
Q 010975          287 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW  365 (496)
Q Consensus       287 ~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~  365 (496)
                      ..+.|..+..++.+|+.+....|+++||||+|.+...++.... ......+..+.++..+++... ...++||++||.++
T Consensus        83 ~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vI~~tn~~~  161 (257)
T 1lv7_A           83 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG-NEGIIVIAATNRPD  161 (257)
T ss_dssp             TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS-SSCEEEEEEESCTT
T ss_pred             HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc-CCCEEEEEeeCCch
Confidence            9899999999999999999888999999999999876543211 122234567788888887654 34588999999999


Q ss_pred             cccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhh
Q 010975          366 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE  443 (496)
Q Consensus       366 ~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le  443 (496)
                      .++++++|  ||+..+.++.|+.++|.+|++.++.......+.++..++..+.||+++||..++++|+..+.++-     
T Consensus       162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~-----  236 (257)
T 1lv7_A          162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN-----  236 (257)
T ss_dssp             TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred             hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----
Confidence            99999998  99999999999999999999999988776667777788999999999999999999988876531     


Q ss_pred             ccccCCCCCCCCCCCCCCchhHHHHhhcCCC
Q 010975          444 GRQEVAPDDELPQIGPIRPEDVEIALKNTRP  474 (496)
Q Consensus       444 ~~~~i~~~~~~~~~~~It~eDf~~Al~~~~P  474 (496)
                                   ...|+++||.+|++.+..
T Consensus       237 -------------~~~i~~~~~~~a~~~~~~  254 (257)
T 1lv7_A          237 -------------KRVVSMVEFEKAKDKIMM  254 (257)
T ss_dssp             -------------CSSBCHHHHHHHHHHHTT
T ss_pred             -------------CCcccHHHHHHHHHHHhc
Confidence                         124899999999988754

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.97  E-value=1.7e-31  Score=261.00  Aligned_cols=247  Identities=34%  Similarity=0.521  Sum_probs=189.0

Q ss_pred             CCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccc
Q 010975          211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW  289 (496)
Q Consensus       211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~  289 (496)
                      |+++|++++|++++|+.|.+.+.. ..+++.+... ...++++||+||||||||++|+++|++++.+++.++++++.+.+
T Consensus         1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~   79 (262)
T 2qz4_A            1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI   79 (262)
T ss_dssp             CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence            467899999999999999998765 5556555443 56778999999999999999999999999999999999999888


Q ss_pred             cCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc--hhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccc
Q 010975          290 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS--EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL  367 (496)
Q Consensus       290 ~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~--~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~L  367 (496)
                      .+.....++.+|..+....|+||||||+|.+...+.....  ........+..++..+++... ...++||+|||.++.+
T Consensus        80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~-~~~~~vi~~tn~~~~l  158 (262)
T 2qz4_A           80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT-TDHVIVLASTNRADIL  158 (262)
T ss_dssp             TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT-TCCEEEEEEESCGGGG
T ss_pred             cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC-CCCEEEEecCCChhhc
Confidence            8888899999999999888999999999999876543211  112234455677777776543 3458899999999999


Q ss_pred             cHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCC--cceeeecccCCcCCchhhcchhhhccHHHHHHHHhh
Q 010975          368 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLP--YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE  443 (496)
Q Consensus       368 d~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~--l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le  443 (496)
                      |+++++  ||+..+.++.|+.++|.+|++.++.........+  ...++..+.|+++++|..++++|+..+.++-     
T Consensus       159 d~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~-----  233 (262)
T 2qz4_A          159 DGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG-----  233 (262)
T ss_dssp             GSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC----------
T ss_pred             CHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence            999999  9999999999999999999999987766554333  3668899999999999999999998877541     


Q ss_pred             ccccCCCCCCCCCCCCCCchhHHHHhhcCCCCcc
Q 010975          444 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH  477 (496)
Q Consensus       444 ~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~  477 (496)
                                   ...|+.+||..|++.+.++..
T Consensus       234 -------------~~~i~~~d~~~a~~~~~~~~~  254 (262)
T 2qz4_A          234 -------------HTSVHTLNFEYAVERVLAGTA  254 (262)
T ss_dssp             ----------------CCBCCHHHHHHHHHHHHH
T ss_pred             -------------CCCCCHHHHHHHHHHhccChh
Confidence                         124899999999999877654

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.97  E-value=3.5e-31  Score=282.20  Aligned_cols=246  Identities=37%  Similarity=0.567  Sum_probs=205.7

Q ss_pred             CCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc
Q 010975          210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK  288 (496)
Q Consensus       210 ~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~  288 (496)
                      .+.++|+||+|++++|+.+.+.+.. ...+..+... ...++++||+||||||||++|+++|.+++.+|+.++++++...
T Consensus        10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~   88 (476)
T 2ce7_A           10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL   88 (476)
T ss_dssp             SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred             CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence            5678899999999999999998765 4455555544 5677899999999999999999999999999999999999999


Q ss_pred             ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc-chhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccc
Q 010975          289 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL  367 (496)
Q Consensus       289 ~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~L  367 (496)
                      +.|.....++.+|..+....|+||||||+|.+...++... +......+++++|+..++++... ..++||++||.++.+
T Consensus        89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~-~~viVIaaTn~~~~L  167 (476)
T 2ce7_A           89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK-EGIIVMAATNRPDIL  167 (476)
T ss_dssp             CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG-GTEEEEEEESCGGGS
T ss_pred             HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC-CCEEEEEecCChhhh
Confidence            9999999999999999999999999999999977654321 12223356778899999876543 458899999999999


Q ss_pred             cHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcc
Q 010975          368 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR  445 (496)
Q Consensus       368 d~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~  445 (496)
                      |++++|  ||+..+.++.|+.++|.+|++.+++......+.++..++..+.|++++||..++++|+..+.++-       
T Consensus       168 d~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~-------  240 (476)
T 2ce7_A          168 DPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG-------  240 (476)
T ss_dssp             CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-------
T ss_pred             chhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC-------
Confidence            999988  99999999999999999999999988877777788889999999999999999999988776530       


Q ss_pred             ccCCCCCCCCCCCCCCchhHHHHhhcCCCC
Q 010975          446 QEVAPDDELPQIGPIRPEDVEIALKNTRPS  475 (496)
Q Consensus       446 ~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps  475 (496)
                                 ...|+++||..|+..+.+.
T Consensus       241 -----------~~~I~~~dl~~al~~v~~~  259 (476)
T 2ce7_A          241 -----------RDKITMKDFEEAIDRVIAG  259 (476)
T ss_dssp             -----------CSSBCHHHHHHHHHHHC--
T ss_pred             -----------CCeecHHHHHHHHHHHhcC
Confidence                       1248999999999988754

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.96  E-value=4.7e-32  Score=266.99  Aligned_cols=252  Identities=34%  Similarity=0.533  Sum_probs=205.9

Q ss_pred             CCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc
Q 010975          209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS  287 (496)
Q Consensus       209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~  287 (496)
                      +.++.+|++++|++++++.+.+.+.. +.+++.+... ...++++||+||||||||++|+++|++++.+++.++++++..
T Consensus         4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~   82 (268)
T 2r62_A            4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE   82 (268)
T ss_dssp             CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred             cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence            56788899999999999999997764 5556555543 566788999999999999999999999999999999999988


Q ss_pred             cccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc--chhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc
Q 010975          288 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR--SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW  365 (496)
Q Consensus       288 ~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~  365 (496)
                      .+.|.....++.+|+.+....|+||||||+|.+...+....  .......+++..|+..+++.......++||+|||.++
T Consensus        83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~  162 (268)
T 2r62_A           83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE  162 (268)
T ss_dssp             SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred             hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence            88888777788889999888899999999999976543211  1111224566788888887765556688999999999


Q ss_pred             cccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhh
Q 010975          366 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE  443 (496)
Q Consensus       366 ~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le  443 (496)
                      .+++++++  ||+..+.++.|+.++|.++++.++.......+.+++.+++.+.|++++||+.++++|+..+.++      
T Consensus       163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~------  236 (268)
T 2r62_A          163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRN------  236 (268)
T ss_dssp             TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSS------
T ss_pred             hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Confidence            99999998  9999999999999999999999998877777777888999999999999999999888765321      


Q ss_pred             ccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccch
Q 010975          444 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH  479 (496)
Q Consensus       444 ~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~  479 (496)
                                  ....|+.+|+..|+..+.|+....
T Consensus       237 ------------~~~~i~~~~~~~a~~~~~~~~~~~  260 (268)
T 2r62_A          237 ------------NQKEVRQQHLKEAVERGIAGLEKK  260 (268)
T ss_dssp             ------------CCCSCCHHHHHTSCTTCCCCCC--
T ss_pred             ------------ccCCcCHHHHHHHHHHHhhcchhh
Confidence                        013489999999999999997753

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.95  E-value=4e-29  Score=244.54  Aligned_cols=246  Identities=36%  Similarity=0.577  Sum_probs=195.8

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS  283 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s  283 (496)
                      .+....|+.+|++++|+++++..+.+..... ..+..+... ...++|++|+||||||||+++++++..++.+++.+++.
T Consensus         5 ~~~~~~~~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~   83 (254)
T 1ixz_A            5 SVLTEAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS   83 (254)
T ss_dssp             ---CCCCSCCGGGCCSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             ccccCCCCCCHHHhCCcHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHH
Confidence            3456778999999999999999999876543 333333333 55667899999999999999999999999999999998


Q ss_pred             cccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCC-cchhHHhhhhhhhhhhhccCccccCcEEEEEeccC
Q 010975          284 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN  362 (496)
Q Consensus       284 ~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn  362 (496)
                      ++...+.+.....+..+|+.+....|+++++||+|.+...+... ...........+.++..+++... ...++++++||
T Consensus        84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~-~~~~i~~a~t~  162 (254)
T 1ixz_A           84 DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATN  162 (254)
T ss_dssp             HHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT-TCCEEEEEEES
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC-CCCEEEEEccC
Confidence            88877777778888899999887788999999999998664321 11122334566788888887654 34578899999


Q ss_pred             CcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHH
Q 010975          363 LPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV  440 (496)
Q Consensus       363 ~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~  440 (496)
                      .|+.+|++++|  ||+..+.++.|+.++|.+|++.+++......+.++..++..+.|++++||..++++|+..+.++   
T Consensus       163 ~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~---  239 (254)
T 1ixz_A          163 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE---  239 (254)
T ss_dssp             CGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT---
T ss_pred             CchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---
Confidence            99999999998  8999999999999999999999987776667777888999999999999999999998776542   


Q ss_pred             HhhccccCCCCCCCCCCCCCCchhHHHHhh
Q 010975          441 LLEGRQEVAPDDELPQIGPIRPEDVEIALK  470 (496)
Q Consensus       441 ~le~~~~i~~~~~~~~~~~It~eDf~~Al~  470 (496)
                         +            ...||++||++|++
T Consensus       240 ---~------------~~~I~~~dl~~a~~  254 (254)
T 1ixz_A          240 ---G------------RRKITMKDLEEAAS  254 (254)
T ss_dssp             ---T------------CSSBCHHHHHHHTC
T ss_pred             ---c------------CCCcCHHHHHHHhC
Confidence               0            12489999999863

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.95  E-value=2.3e-29  Score=269.61  Aligned_cols=246  Identities=36%  Similarity=0.557  Sum_probs=206.5

Q ss_pred             CCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccc
Q 010975          211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW  289 (496)
Q Consensus       211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~  289 (496)
                      ++++|+|++|++++|+.+.+.+.. ...+..+... ...+++++|+||||||||+||+++|.+++.+++.++++++...+
T Consensus        26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~  104 (499)
T 2dhr_A           26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF  104 (499)
T ss_dssp             CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred             CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence            778899999999999999998765 3445555444 56678899999999999999999999999999999999999888


Q ss_pred             cCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc-chhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccccc
Q 010975          290 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD  368 (496)
Q Consensus       290 ~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld  368 (496)
                      .|.....++.+|+.+....|+|+||||||.+...++... .......+.+++++..|++... ...++++++||.|+.+|
T Consensus       105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~-~~~viviAatn~p~~LD  183 (499)
T 2dhr_A          105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPDILD  183 (499)
T ss_dssp             TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS-SCCCEEEECCSCGGGSC
T ss_pred             hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc-CccEEEEEecCChhhcC
Confidence            888888999999999888899999999999976554211 1223335667888889987754 34578999999999999


Q ss_pred             HHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccc
Q 010975          369 AAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQ  446 (496)
Q Consensus       369 ~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~  446 (496)
                      ++++|  ||++.+.++.|+.++|.+|++.+++......+.++..++..+.|++++||+.++++|+..+.++         
T Consensus       184 ~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~---------  254 (499)
T 2dhr_A          184 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE---------  254 (499)
T ss_dssp             TTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTT---------
T ss_pred             cccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---------
Confidence            99998  8999999999999999999999998777777888899999999999999999999998775442         


Q ss_pred             cCCCCCCCCCCCCCCchhHHHHhhcCCCCc
Q 010975          447 EVAPDDELPQIGPIRPEDVEIALKNTRPSA  476 (496)
Q Consensus       447 ~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~  476 (496)
                               ....|+++||..|+..+.+..
T Consensus       255 ---------~~~~It~~dl~~al~~v~~~~  275 (499)
T 2dhr_A          255 ---------GRRKITMKDLEEAADRVMMLP  275 (499)
T ss_dssp             ---------CCSSCCSHHHHHHHHHHTTCS
T ss_pred             ---------CCCccCHHHHHHHHHHHhccc
Confidence                     012489999999999987653

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.94  E-value=9.7e-28  Score=238.26  Aligned_cols=243  Identities=37%  Similarity=0.574  Sum_probs=193.4

Q ss_pred             hCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975          208 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV  286 (496)
Q Consensus       208 ~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~  286 (496)
                      ...|+.+|++++|.+++++.+.+..... ..+..+... ...+++++|+||||||||+++++++..++.+++.+++.++.
T Consensus        32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~  110 (278)
T 1iy2_A           32 TEAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV  110 (278)
T ss_dssp             CCCCCCCGGGSSSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             cCCCCCCHHHhCChHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence            3447888999999999999999877543 233333332 45567899999999999999999999999999999998887


Q ss_pred             ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc-chhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc
Q 010975          287 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW  365 (496)
Q Consensus       287 ~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~  365 (496)
                      ..+.+.....+..+|+.+....|+++++||+|.+...+.... ............++..+++... ...++++++||.|+
T Consensus       111 ~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~-~~~~i~~a~t~~p~  189 (278)
T 1iy2_A          111 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPD  189 (278)
T ss_dssp             HSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT-TCCEEEEEEESCTT
T ss_pred             HHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC-CCCEEEEEecCCch
Confidence            777777778888999998877889999999999976543210 1122234556777888887653 34578899999999


Q ss_pred             cccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhh
Q 010975          366 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE  443 (496)
Q Consensus       366 ~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le  443 (496)
                      .+|++++|  ||+..+.++.|+.++|.+|++.+++......+.++..++..+.|++++||+.++++|+..+.++      
T Consensus       190 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~------  263 (278)
T 1iy2_A          190 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE------  263 (278)
T ss_dssp             SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred             hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Confidence            99999998  8999999999999999999999988776666777888999999999999999999998776542      


Q ss_pred             ccccCCCCCCCCCCCCCCchhHHHHhh
Q 010975          444 GRQEVAPDDELPQIGPIRPEDVEIALK  470 (496)
Q Consensus       444 ~~~~i~~~~~~~~~~~It~eDf~~Al~  470 (496)
                      +            ...||++||++|++
T Consensus       264 ~------------~~~I~~~dl~~a~~  278 (278)
T 1iy2_A          264 G------------RRKITMKDLEEAAS  278 (278)
T ss_dssp             T------------CCSBCHHHHHHHTC
T ss_pred             C------------CCCcCHHHHHHHhC
Confidence            0            12489999999873

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=99.92  E-value=2.7e-26  Score=230.38  Aligned_cols=174  Identities=21%  Similarity=0.295  Sum_probs=132.8

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHh----hhcCCcceehhhHHHHH
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAII  321 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a----~~~~p~ILfIDEID~L~  321 (496)
                      ..+++++||+||||||||++|+++|++++.+++.++++++.+++.|..+..++.+|..+    +...|+||||||||.+.
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~  112 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA  112 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence            45678999999999999999999999999999999999999999999999999999988    56788999999999998


Q ss_pred             hhhcCCcchhHHhhhhhhhhhhhccCcc----------ccCcEEEEEeccCCcccccHHHHH--HhhhhhcccCCCHHHH
Q 010975          322 SQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEAR  389 (496)
Q Consensus       322 ~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~viVIatTn~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR  389 (496)
                      +.+.+........+.+...|+..+|+..          ....+++||+|||.++.+|++++|  ||+..+.  .|+.++|
T Consensus       113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r  190 (293)
T 3t15_A          113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR  190 (293)
T ss_dssp             -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHH
T ss_pred             CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHH
Confidence            8654333222334567788888887443          133468899999999999999997  8987675  5799999


Q ss_pred             HHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhh
Q 010975          390 RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRL  425 (496)
Q Consensus       390 ~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~  425 (496)
                      .+|++.++...    +.+.+.+++.+.+|++++|..
T Consensus       191 ~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~  222 (293)
T 3t15_A          191 IGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF  222 (293)
T ss_dssp             HHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred             HHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence            99999887643    456778999999999999864

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=99.84  E-value=4.8e-23  Score=223.51  Aligned_cols=200  Identities=23%  Similarity=0.232  Sum_probs=140.1

Q ss_pred             cCCccccccccccCCCCCCCCCcHHHHHHHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCcc
Q 010975          170 LNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPW  249 (496)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~  249 (496)
                      ...+.++|+++....||.........           .......-+++++|++++++.+.+.+.........      ++
T Consensus        46 e~~~~~~~l~~~~~lp~~~~~~~~~~-----------~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~------~g  108 (543)
T 3m6a_A           46 ESSVIRNYIDWLVALPWTDETDDKLD-----------LKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSL------KG  108 (543)
T ss_dssp             TTTHHHHHHHHHHHSCSSCCCCCCCC-----------TTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSC------CS
T ss_pred             hHhHHHHHHHHHhcCCCCcccccccc-----------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccC------CC
Confidence            34588899998888888765443211           11112223578999999999998877654433322      45


Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc---------cccCChHHHHHHHHHHhhhcCCcceehhhHHHH
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS---------KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAI  320 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~---------~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L  320 (496)
                      .+++|+||||||||++|+++|..++.++..++++.+..         .+.|...+.+...|..+....| ||||||||.+
T Consensus       109 ~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l  187 (543)
T 3m6a_A          109 PILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKM  187 (543)
T ss_dssp             CEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSE-EEEEEESSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhh
Confidence            68999999999999999999999999999998876543         4667777777888888876665 9999999998


Q ss_pred             HhhhcCCcchhHHhhhhhhhhhhhccCccc------------cCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHH
Q 010975          321 ISQRGEARSEHEASRRLKTELLIQMDGLTQ------------SDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEA  388 (496)
Q Consensus       321 ~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~------------~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~ee  388 (496)
                      ..+++.         ...+.|+..++....            ....++||+|||.++.++++|++||. ++.++.|+.++
T Consensus       188 ~~~~~~---------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~~e  257 (543)
T 3m6a_A          188 SSDFRG---------DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRME-IINIAGYTEIE  257 (543)
T ss_dssp             C------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEE-EEECCCCCHHH
T ss_pred             hhhhcc---------CHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcc-eeeeCCCCHHH
Confidence            655321         133556666653221            11457899999999999999999996 59999999999


Q ss_pred             HHHHHHhhC
Q 010975          389 RRAMFESLL  397 (496)
Q Consensus       389 R~~Il~~~l  397 (496)
                      +..|++.++
T Consensus       258 ~~~Il~~~l  266 (543)
T 3m6a_A          258 KLEIVKDHL  266 (543)
T ss_dssp             HHHHHHHTH
T ss_pred             HHHHHHHHH
Confidence            999999876

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=99.84  E-value=8.5e-24  Score=224.72  Aligned_cols=202  Identities=21%  Similarity=0.277  Sum_probs=138.0

Q ss_pred             CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc--ceeeeeeccccccc
Q 010975          211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSK  288 (496)
Q Consensus       211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~--~~~i~v~~s~l~~~  288 (496)
                      |...|++++|++++++.+.+++....       ....+++++||+||||||||++|+++|++++  .+|+.++++++.++
T Consensus        32 ~~~~~~~iiG~~~~~~~l~~~~~~~~-------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~  104 (456)
T 2c9o_A           32 AKQAASGLVGQENAREACGVIVELIK-------SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST  104 (456)
T ss_dssp             BCSEETTEESCHHHHHHHHHHHHHHH-------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred             hhhchhhccCHHHHHHHHHHHHHHHH-------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence            45568999999999999888774322       2234568999999999999999999999998  99999999999999


Q ss_pred             ccCChHHHHHHHHHHh---hhcCCcceehhhHHHHHhhhcCCcch--hHHhhhhh---------------hhhhhhccCc
Q 010975          289 WRGDSEKLIKVLFELA---RHHAPSTIFLDEIDAIISQRGEARSE--HEASRRLK---------------TELLIQMDGL  348 (496)
Q Consensus       289 ~~G~~e~~l~~lf~~a---~~~~p~ILfIDEID~L~~~r~~~~~~--~~~~~~i~---------------~~Ll~~ld~~  348 (496)
                      +.|+++. ++.+|..+   +...|+||||||+|.+++++......  .....+++               +.++..++..
T Consensus       105 ~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~  183 (456)
T 2c9o_A          105 EIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKE  183 (456)
T ss_dssp             SSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHT
T ss_pred             hhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhc
Confidence            9999887 89999999   77889999999999998876543211  11112222               2234444311


Q ss_pred             -cccCcEEEEEeccCCcccccHHHHH--Hhhh--hhcccCC--CHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCC
Q 010975          349 -TQSDELVFVLAATNLPWELDAAMLR--RLEK--RILVPLP--DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGS  421 (496)
Q Consensus       349 -~~~~~~viVIatTn~p~~Ld~aL~r--Rf~~--~I~~~~P--~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~  421 (496)
                       ...+..++|++|||.++.+|++++|  ||+.  .+.++.|  +.++|.+|++.+..       .+++.++..+.|  |+
T Consensus       184 ~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--ga  254 (456)
T 2c9o_A          184 RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--GQ  254 (456)
T ss_dssp             TCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC---------
T ss_pred             cCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--hh
Confidence             1235557777999999999999876  9987  5666777  45778888876653       257788889999  89


Q ss_pred             chhhcchh
Q 010975          422 DIRLVSKE  429 (496)
Q Consensus       422 dI~~l~~~  429 (496)
                      |+..+|..
T Consensus       255 dl~~l~~~  262 (456)
T 2c9o_A          255 DILSMMGQ  262 (456)
T ss_dssp             --------
T ss_pred             HHHHHHhh
Confidence            99999854

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=99.81  E-value=1.6e-21  Score=195.25  Aligned_cols=214  Identities=18%  Similarity=0.208  Sum_probs=154.1

Q ss_pred             chhhcchHHHHHHhhhhcccccCcccccc-c---cCccceeeeeCCCCChhHHHHHHHHhhhcc-------eeeeeeccc
Q 010975          216 ESIKGLENAKRLLKEAVVMPIKYPKYFTG-L---LSPWKGILLFGPPGTGKTMLAKAVATECKT-------TFFNISASS  284 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~-~---~~~~~~vLL~GPpGtGKT~LAralA~~l~~-------~~i~v~~s~  284 (496)
                      .+++|++++|+.|.+.+..... +..... +   ..++.++||+||||||||++|+++|+.++.       +++.+++++
T Consensus        31 ~~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~  109 (309)
T 3syl_A           31 RELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD  109 (309)
T ss_dssp             HHSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG
T ss_pred             HHccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH
Confidence            3799999999999998865432 111111 1   234457999999999999999999998843       899999999


Q ss_pred             ccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc
Q 010975          285 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP  364 (496)
Q Consensus       285 l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p  364 (496)
                      +.+.+.|.....+..+|..+.   ++||||||+|.+...+++    ......+++.|+..++.   ....++||+++|.+
T Consensus       110 l~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~l~~~~~~----~~~~~~~~~~Ll~~l~~---~~~~~~~i~~~~~~  179 (309)
T 3syl_A          110 LVGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMEN---NRDDLVVILAGYAD  179 (309)
T ss_dssp             TCCSSTTCHHHHHHHHHHHHT---TSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHH---CTTTCEEEEEECHH
T ss_pred             hhhhcccccHHHHHHHHHhcC---CCEEEEEChhhhccCCCc----ccccHHHHHHHHHHHhc---CCCCEEEEEeCChH
Confidence            999999999998888888774   489999999998654322    12234566778887773   23346677888765


Q ss_pred             c-----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCC-Ccceeeeccc-------CCcCCchhhcchhhh
Q 010975          365 W-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTE-------GYSGSDIRLVSKEAA  431 (496)
Q Consensus       365 ~-----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~-~l~~la~~t~-------g~s~~dI~~l~~~A~  431 (496)
                      .     .+++++++||+..+.|+.|+.+++..|++.++.......+. .++.++....       .-..+++..+++.+.
T Consensus       180 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~  259 (309)
T 3syl_A          180 RMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRAR  259 (309)
T ss_dssp             HHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHH
Confidence            3     35789999998889999999999999999998765433221 1222333311       122466777777777


Q ss_pred             ccHHHHHHH
Q 010975          432 MQPLRRLMV  440 (496)
Q Consensus       432 ~~a~rR~~~  440 (496)
                      ..+..|...
T Consensus       260 ~~~~~r~~~  268 (309)
T 3syl_A          260 LRQANRLFT  268 (309)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            776666554

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=99.79  E-value=3.4e-20  Score=184.75  Aligned_cols=252  Identities=21%  Similarity=0.282  Sum_probs=159.7

Q ss_pred             chhhcchHHHHHHhhhhcccccCccccccc--cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc-cccCC
Q 010975          216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD  292 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~--~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~-~~~G~  292 (496)
                      ++++|++++++.+...+..+..........  ...+.++||+||||||||++|+++|+.++.+++.++++++.. .+.|.
T Consensus        15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~   94 (310)
T 1ofh_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK   94 (310)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence            469999999999998886543332222111  234578999999999999999999999999999999998875 45543


Q ss_pred             -hHHHHHHHHHHhh-----hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccc-------cCcEEEEEe
Q 010975          293 -SEKLIKVLFELAR-----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLA  359 (496)
Q Consensus       293 -~e~~l~~lf~~a~-----~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-------~~~~viVIa  359 (496)
                       ....++.++..+.     ...++||||||+|.+......... ......+.+.|+..+++...       ....+++|+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~-~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~  173 (310)
T 1ofh_A           95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGA-DVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA  173 (310)
T ss_dssp             STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSS-HHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred             cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccccc-chhHHHHHHHHHHHhcCCeEecccccccCCcEEEEE
Confidence             2345666665331     123579999999999765432211 12223345667777765311       123456777


Q ss_pred             c----cCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceee---ecccCCcCCchhhcchhhhc
Q 010975          360 A----TNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLV---ERTEGYSGSDIRLVSKEAAM  432 (496)
Q Consensus       360 t----Tn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la---~~t~g~s~~dI~~l~~~A~~  432 (496)
                      +    ++.+..+++++++||+..+.+++|+.+++..|++..+......    +....   ...-.++...+..+++.++.
T Consensus       174 ~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~----~~~~~~~~~~~~~~~~~a~~~l~~~~~~  249 (310)
T 1ofh_A          174 SGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQ----YKALMATEGVNIAFTTDAVKKIAEAAFR  249 (310)
T ss_dssp             EECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHH----HHHHHHHTTCEEEECHHHHHHHHHHHHH
T ss_pred             cCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHH----HHHHHHhcCCeeccCHHHHHHHHHHhhh
Confidence            7    5677889999999999889999999999999998543210000    00000   00012444556666666552


Q ss_pred             -------cHHHHHHHHhhcccc-----CCCCCCCCCCCCCCchhHHHHhhcCCC
Q 010975          433 -------QPLRRLMVLLEGRQE-----VAPDDELPQIGPIRPEDVEIALKNTRP  474 (496)
Q Consensus       433 -------~a~rR~~~~le~~~~-----i~~~~~~~~~~~It~eDf~~Al~~~~P  474 (496)
                             +.+|++.+.++....     ....+  .....||.+|+.++++....
T Consensus       250 ~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~--~~~~~i~~~~v~~~l~~~~~  301 (310)
T 1ofh_A          250 VNEKTENIGARRLHTVMERLMDKISFSASDMN--GQTVNIDAAYVADALGEVVE  301 (310)
T ss_dssp             HHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCT--TCEEEECHHHHHHHTCSSSS
T ss_pred             hcccccccCcHHHHHHHHHHHHhhhcCCcccc--CCEEEEeeHHHHHHHHhhhh
Confidence                   555655555443220     11111  11124899999999987643

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=99.78  E-value=9.7e-20  Score=184.80  Aligned_cols=170  Identities=16%  Similarity=0.180  Sum_probs=124.7

Q ss_pred             hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc
Q 010975          204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS  283 (496)
Q Consensus       204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s  283 (496)
                      ..+..++.+.+|++++|.+.+++.+.+.+.......       .+..++||+||||||||++|+++|++++.+++.+++.
T Consensus        17 ~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~-------~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~   89 (338)
T 3pfi_A           17 ETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRN-------ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAP   89 (338)
T ss_dssp             ------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTT-------SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             hhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcC-------CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecch
Confidence            355667778899999999999999999886543211       2346899999999999999999999999999999987


Q ss_pred             cccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc--------------
Q 010975          284 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------------  349 (496)
Q Consensus       284 ~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------------  349 (496)
                      .+.      ....+...+...  ..+++|||||||.+...             ....|+..++...              
T Consensus        90 ~~~------~~~~~~~~~~~~--~~~~vl~lDEi~~l~~~-------------~~~~Ll~~l~~~~~~~~~~~~~~~~~~  148 (338)
T 3pfi_A           90 MIE------KSGDLAAILTNL--SEGDILFIDEIHRLSPA-------------IEEVLYPAMEDYRLDIIIGSGPAAQTI  148 (338)
T ss_dssp             GCC------SHHHHHHHHHTC--CTTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCC---------CCCC
T ss_pred             hcc------chhHHHHHHHhc--cCCCEEEEechhhcCHH-------------HHHHHHHHHHhccchhhcccCccccce
Confidence            653      233444444432  34689999999987432             2233444443221              


Q ss_pred             -ccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975          350 -QSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       350 -~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                       .....+++|++||....+++++++||+..+.++.|+.+++..+++.++....
T Consensus       149 ~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~  201 (338)
T 3pfi_A          149 KIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN  201 (338)
T ss_dssp             CCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT
T ss_pred             ecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC
Confidence             1112478899999999999999999988899999999999999998876543

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=99.77  E-value=1e-19  Score=186.37  Aligned_cols=221  Identities=17%  Similarity=0.162  Sum_probs=140.0

Q ss_pred             CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc--eeeeeeccccccc
Q 010975          211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISASSVVSK  288 (496)
Q Consensus       211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~--~~i~v~~s~l~~~  288 (496)
                      |...|++++|++.+++.+..+.....       ....+++++||+||||||||++|+++|+.++.  +++.+++..+...
T Consensus        39 p~~~~~~ivG~~~~~~~l~~l~~~~~-------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~  111 (368)
T 3uk6_A           39 PRQASQGMVGQLAARRAAGVVLEMIR-------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL  111 (368)
T ss_dssp             BCSEETTEESCHHHHHHHHHHHHHHH-------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred             cCcchhhccChHHHHHHHHHHHHHHH-------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence            44559999999999988765543221       11233478999999999999999999999974  7777776553332


Q ss_pred             cc-------------------------------------------------CChHHHHHHHHHHhhh---------cCCc
Q 010975          289 WR-------------------------------------------------GDSEKLIKVLFELARH---------HAPS  310 (496)
Q Consensus       289 ~~-------------------------------------------------G~~e~~l~~lf~~a~~---------~~p~  310 (496)
                      +.                                                 |.....++..+..+..         ..|+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~  191 (368)
T 3uk6_A          112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG  191 (368)
T ss_dssp             SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred             ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence            21                                                 2223344444444332         1267


Q ss_pred             ceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEecc-----------CCcccccHHHHHHhhhhh
Q 010975          311 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT-----------NLPWELDAAMLRRLEKRI  379 (496)
Q Consensus       311 ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatT-----------n~p~~Ld~aL~rRf~~~I  379 (496)
                      ||||||+|.+..             ...+.|+..++..   ...++++++.           |.+..+++++++||.. +
T Consensus       192 vl~IDEi~~l~~-------------~~~~~L~~~le~~---~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~-i  254 (368)
T 3uk6_A          192 VLFIDEVHMLDI-------------ESFSFLNRALESD---MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI-V  254 (368)
T ss_dssp             EEEEESGGGSBH-------------HHHHHHHHHTTCT---TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-E
T ss_pred             eEEEhhccccCh-------------HHHHHHHHHhhCc---CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE-E
Confidence            999999998732             2334555555532   2224444443           3467899999999977 8


Q ss_pred             cccCCCHHHHHHHHHhhCCCCCCCC-CCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCC
Q 010975          380 LVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIG  458 (496)
Q Consensus       380 ~~~~P~~eeR~~Il~~~l~~~~~~~-~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~  458 (496)
                      .+++|+.+++..+++..+....... +..++.+++.+.+.+++++..+++.|...+..+                  ...
T Consensus       255 ~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~------------------~~~  316 (368)
T 3uk6_A          255 STTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR------------------KGT  316 (368)
T ss_dssp             EECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT------------------TCS
T ss_pred             EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh------------------CCC
Confidence            9999999999999998876543321 112333444444333444445555444433221                  113


Q ss_pred             CCCchhHHHHhhcCC
Q 010975          459 PIRPEDVEIALKNTR  473 (496)
Q Consensus       459 ~It~eDf~~Al~~~~  473 (496)
                      .||.+|+.+++..+.
T Consensus       317 ~It~~~v~~a~~~~~  331 (368)
T 3uk6_A          317 EVQVDDIKRVYSLFL  331 (368)
T ss_dssp             SBCHHHHHHHHHHSB
T ss_pred             CCCHHHHHHHHHHhc
Confidence            599999999999754

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=99.75  E-value=9.5e-19  Score=172.56  Aligned_cols=229  Identities=20%  Similarity=0.258  Sum_probs=143.3

Q ss_pred             chhhcchHHHHHHhhh---hcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc-ccccC
Q 010975          216 ESIKGLENAKRLLKEA---VVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV-SKWRG  291 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~---l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~-~~~~G  291 (496)
                      +.++|.+...+.+...   +...+.     .....++.++||+||||||||++|+++|+.++.+++.+++++.. +...+
T Consensus        33 ~~~i~~~~~~~~i~~~~~~l~~~l~-----~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~  107 (272)
T 1d2n_A           33 NGIIKWGDPVTRVLDDGELLVQQTK-----NSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSET  107 (272)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHHHHH-----HCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHH
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHh-----ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchH
Confidence            4567776665555542   111111     00123457899999999999999999999999999999876522 21112


Q ss_pred             ChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccH-H
Q 010975          292 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA-A  370 (496)
Q Consensus       292 ~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~-a  370 (496)
                      .....++.+|..+....+++|||||+|.+.+.+...   ......++..|...+++.......++||+|||.++.+++ .
T Consensus       108 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~  184 (272)
T 1d2n_A          108 AKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG---PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEME  184 (272)
T ss_dssp             HHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT---TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC---hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhh
Confidence            233567788888877778999999999997653321   112244556666677766556677889999999998888 6


Q ss_pred             HHHHhhhhhcccCCCH-HHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCC
Q 010975          371 MLRRLEKRILVPLPDT-EARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA  449 (496)
Q Consensus       371 L~rRf~~~I~~~~P~~-eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~  449 (496)
                      +.+||...+.+|.++. ++...++...   ... .+..+..+++.+.|++           +...+|++++.++......
T Consensus       185 l~~rf~~~i~~p~l~~r~~i~~i~~~~---~~~-~~~~~~~l~~~~~g~~-----------~~g~ir~l~~~l~~a~~~~  249 (272)
T 1d2n_A          185 MLNAFSTTIHVPNIATGEQLLEALELL---GNF-KDKERTTIAQQVKGKK-----------VWIGIKKLLMLIEMSLQMD  249 (272)
T ss_dssp             CTTTSSEEEECCCEEEHHHHHHHHHHH---TCS-CHHHHHHHHHHHTTSE-----------EEECHHHHHHHHHHHTTSC
T ss_pred             hhcccceEEcCCCccHHHHHHHHHHhc---CCC-CHHHHHHHHHHhcCCC-----------ccccHHHHHHHHHHHhhhc
Confidence            7889988787766655 4444444431   111 1112333344444332           2335666666666544322


Q ss_pred             CCCCCCCCCCCCchhHHHHhhcCCCC
Q 010975          450 PDDELPQIGPIRPEDVEIALKNTRPS  475 (496)
Q Consensus       450 ~~~~~~~~~~It~eDf~~Al~~~~Ps  475 (496)
                      +        ....+++.+++.....+
T Consensus       250 ~--------~~~~~~~~~~l~~~~~~  267 (272)
T 1d2n_A          250 P--------EYRVRKFLALLREEGAS  267 (272)
T ss_dssp             G--------GGHHHHHHHHHHHTSCC
T ss_pred             h--------HHHHHHHHHHHHHcCCc
Confidence            1        13566777777666554

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=99.73  E-value=1.8e-18  Score=183.37  Aligned_cols=228  Identities=21%  Similarity=0.264  Sum_probs=151.2

Q ss_pred             hhhhCCCCCccchhhcchHHH---HHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          205 DIIRGSPDVKWESIKGLENAK---RLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk---~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      .+.....+.+|++++|+++++   +.|...+....            ..++||+||||||||++|+++|+.++.+++.++
T Consensus        15 pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~------------~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~   82 (447)
T 3pvs_A           15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH------------LHSMILWGPPGTGKTTLAEVIARYANADVERIS   82 (447)
T ss_dssp             CHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTC------------CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred             ChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCC------------CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence            344556778899999999999   66766664321            258999999999999999999999999999998


Q ss_pred             cccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEE
Q 010975          282 ASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV  357 (496)
Q Consensus       282 ~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV  357 (496)
                      +...       ....++.++..+..    ..++||||||||.+...             .++.|+..++.    ...++|
T Consensus        83 a~~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~-------------~q~~LL~~le~----~~v~lI  138 (447)
T 3pvs_A           83 AVTS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS-------------QQDAFLPHIED----GTITFI  138 (447)
T ss_dssp             TTTC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-------------------CCHHHHHT----TSCEEE
T ss_pred             eccC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH-------------HHHHHHHHHhc----CceEEE
Confidence            7543       23345555555442    35689999999987433             23456666663    333444


Q ss_pred             EeccCCc-ccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHH
Q 010975          358 LAATNLP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR  436 (496)
Q Consensus       358 IatTn~p-~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~r  436 (496)
                      .+||.++ ..+++++++|+.. +.++.|+.+++..+++..+.........       ..-.++...+..+++. +.+.+|
T Consensus       139 ~att~n~~~~l~~aL~sR~~v-~~l~~l~~edi~~il~~~l~~~~~~~~~-------~~~~i~~~al~~L~~~-~~Gd~R  209 (447)
T 3pvs_A          139 GATTENPSFELNSALLSRARV-YLLKSLSTEDIEQVLTQAMEDKTRGYGG-------QDIVLPDETRRAIAEL-VNGDAR  209 (447)
T ss_dssp             EEESSCGGGSSCHHHHTTEEE-EECCCCCHHHHHHHHHHHHHCTTTSSTT-------SSEECCHHHHHHHHHH-HCSCHH
T ss_pred             ecCCCCcccccCHHHhCceeE-EeeCCcCHHHHHHHHHHHHHHHhhhhcc-------ccCcCCHHHHHHHHHH-CCCCHH
Confidence            4454444 5799999999974 8899999999999999988653322110       0011333444444444 667778


Q ss_pred             HHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc
Q 010975          437 RLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL  478 (496)
Q Consensus       437 R~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~  478 (496)
                      ++.+.++........+. .....||.+|+.+++....+....
T Consensus       210 ~lln~Le~a~~~a~~~~-~~~~~It~e~v~~~l~~~~~~~dk  250 (447)
T 3pvs_A          210 RALNTLEMMADMAEVDD-SGKRVLKPELLTEIAGERSARFDN  250 (447)
T ss_dssp             HHHHHHHHHHHHSCBCT-TSCEECCHHHHHHHHTCCCCC---
T ss_pred             HHHHHHHHHHHhccccc-CCCCccCHHHHHHHHhhhhhccCC
Confidence            77777765554332110 012359999999999988765543

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=99.73  E-value=2.2e-18  Score=183.72  Aligned_cols=191  Identities=20%  Similarity=0.301  Sum_probs=133.0

Q ss_pred             hhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---------
Q 010975          203 CRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------  273 (496)
Q Consensus       203 ~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---------  273 (496)
                      .+++...+.+.++++++|.++.++++.+.+...            ..+++||+||||||||++|+++|+.+         
T Consensus       167 ~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~------------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l  234 (468)
T 3pxg_A          167 ARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRR------------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEIL  234 (468)
T ss_dssp             CCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCS------------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTT
T ss_pred             HHHHHHHHhcCCCCCccCcHHHHHHHHHHHhcc------------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhh
Confidence            355666677788999999999999999887542            23689999999999999999999997         


Q ss_pred             -cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccC
Q 010975          274 -KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD  352 (496)
Q Consensus       274 -~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~  352 (496)
                       +.+++.++++   +.+.|.++..++.++..+....++|||||      +.           ....+.|+..++    ++
T Consensus       235 ~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~~-----------~~a~~~L~~~L~----~g  290 (468)
T 3pxg_A          235 RDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------AA-----------IDASNILKPSLA----RG  290 (468)
T ss_dssp             SSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C-------------------CCCTT----SS
T ss_pred             cCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------Cc-----------hhHHHHHHHhhc----CC
Confidence             7789999887   67888888899999999998888999999      11           112233444443    22


Q ss_pred             cEEEEEeccCCcc-----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCc-----ceeeecccCCcCC-
Q 010975          353 ELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPY-----DLLVERTEGYSGS-  421 (496)
Q Consensus       353 ~~viVIatTn~p~-----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l-----~~la~~t~g~s~~-  421 (496)
                       .+.+|++||.+.     .++++++|||.. +.++.|+.+++..|++.++..+...++..+     ..++..+.+|.+. 
T Consensus       291 -~v~vI~at~~~e~~~~~~~~~al~~Rf~~-i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~  368 (468)
T 3pxg_A          291 -ELQCIGATTLDEYRKYIEKDAALERRFQP-IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDR  368 (468)
T ss_dssp             -SCEEEEECCTTTTHHHHTTCSHHHHSEEE-EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCS
T ss_pred             -CEEEEecCCHHHHHHHhhcCHHHHHhCcc-ceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Confidence             466788888775     689999999986 999999999999999998877544333333     3345555555443 


Q ss_pred             ----chhhcchhhh
Q 010975          422 ----DIRLVSKEAA  431 (496)
Q Consensus       422 ----dI~~l~~~A~  431 (496)
                          ....++.+|+
T Consensus       369 ~lp~~ai~ll~~a~  382 (468)
T 3pxg_A          369 FLPDKAIDLIDEAG  382 (468)
T ss_dssp             CTTHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHH
Confidence                3444444443

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=99.72  E-value=1.4e-18  Score=159.21  Aligned_cols=168  Identities=21%  Similarity=0.334  Sum_probs=119.4

Q ss_pred             hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----------
Q 010975          204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------  273 (496)
Q Consensus       204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----------  273 (496)
                      ..+....++..|++++|.++..+++.+.+..            ..+.+++|+||||||||++|+++++.+          
T Consensus        10 ~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~   77 (195)
T 1jbk_A           10 IDLTERAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLK   77 (195)
T ss_dssp             EEHHHHHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGT
T ss_pred             HHHHHHHhhccccccccchHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhc
Confidence            3444455566799999999999999887743            123689999999999999999999987          


Q ss_pred             cceeeeeeccccc--ccccCChHHHHHHHHHHhhh-cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccc
Q 010975          274 KTTFFNISASSVV--SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ  350 (496)
Q Consensus       274 ~~~~i~v~~s~l~--~~~~G~~e~~l~~lf~~a~~-~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~  350 (496)
                      +.+++.+++..+.  ..+.+.....+..++..+.. ..+.||+|||+|.+.......     ....+.+.+...++    
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~-----~~~~~~~~l~~~~~----  148 (195)
T 1jbk_A           78 GRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-----GAMDAGNMLKPALA----  148 (195)
T ss_dssp             TCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-----------CCCCHHHHHHHHH----
T ss_pred             CCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc-----chHHHHHHHHHhhc----
Confidence            6788888887765  23445566677777776543 446799999999986542211     01122222333332    


Q ss_pred             cCcEEEEEeccCCcc-----cccHHHHHHhhhhhcccCCCHHHHHHHHH
Q 010975          351 SDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFE  394 (496)
Q Consensus       351 ~~~~viVIatTn~p~-----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~  394 (496)
                       ...+.+|++||.+.     .+++++++||.. +.++.|+.+++.+|++
T Consensus       149 -~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~-i~~~~p~~~~~~~il~  195 (195)
T 1jbk_A          149 -RGELHCVGATTLDEYRQYIEKDAALERRFQK-VFVAEPSVEDTIAILR  195 (195)
T ss_dssp             -TTSCCEEEEECHHHHHHHTTTCHHHHTTEEE-EECCCCCHHHHHTTCC
T ss_pred             -cCCeEEEEeCCHHHHHHHHhcCHHHHHHhce-eecCCCCHHHHHHHhC
Confidence             12356777888775     689999999984 9999999999998763

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=99.71  E-value=2.6e-18  Score=176.72  Aligned_cols=179  Identities=22%  Similarity=0.334  Sum_probs=126.1

Q ss_pred             hhhcchHHHHHHhhhhcccccCcccc---ccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc-ccCC
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYF---TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-WRGD  292 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~---~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~-~~G~  292 (496)
                      .|+|++.+++.+...+..........   .....++.++||+||||||||++|+++|+.++.+++.++++++... |.|.
T Consensus        16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~   95 (363)
T 3hws_A           16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE   95 (363)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence            47999999999998885332221111   1112356789999999999999999999999999999999988753 6666


Q ss_pred             h-HHHHHHHHHHh----hhcCCcceehhhHHHHHhhhcCCcchhHH-hhhhhhhhhhhccCccc----------cCcEEE
Q 010975          293 S-EKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEA-SRRLKTELLIQMDGLTQ----------SDELVF  356 (496)
Q Consensus       293 ~-e~~l~~lf~~a----~~~~p~ILfIDEID~L~~~r~~~~~~~~~-~~~i~~~Ll~~ld~~~~----------~~~~vi  356 (496)
                      . ...++.++..+    ....++||||||+|.+...+......... .+.+++.|+..|++...          ....++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~  175 (363)
T 3hws_A           96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL  175 (363)
T ss_dssp             HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred             cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence            5 55667777665    33456899999999998765443322222 23478889998884311          011234


Q ss_pred             EEeccCC--------c----------------------------------------cc-----ccHHHHHHhhhhhcccC
Q 010975          357 VLAATNL--------P----------------------------------------WE-----LDAAMLRRLEKRILVPL  383 (496)
Q Consensus       357 VIatTn~--------p----------------------------------------~~-----Ld~aL~rRf~~~I~~~~  383 (496)
                      +|+|||.        .                                        ..     +.++|.+||+.++.+.+
T Consensus       176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~p  255 (363)
T 3hws_A          176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNE  255 (363)
T ss_dssp             CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCC
T ss_pred             EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCC
Confidence            5555554        1                                        11     67899999999999999


Q ss_pred             CCHHHHHHHHHh
Q 010975          384 PDTEARRAMFES  395 (496)
Q Consensus       384 P~~eeR~~Il~~  395 (496)
                      |+.+++.+|+..
T Consensus       256 l~~~~~~~I~~~  267 (363)
T 3hws_A          256 LSEEALIQILKE  267 (363)
T ss_dssp             CCHHHHHHHHHS
T ss_pred             CCHHHHHHHHHH
Confidence            999999999987

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=99.71  E-value=2.9e-18  Score=180.61  Aligned_cols=166  Identities=20%  Similarity=0.232  Sum_probs=83.2

Q ss_pred             chhhcchHHHHHHhhhhcccccCcccccccc--CccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc-cccCC
Q 010975          216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLL--SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD  292 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~--~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~-~~~G~  292 (496)
                      ++|+|++++|+.|...+..+.+++..+....  .+++++||+||||||||++|+++|+.++.+++.++++.+.. .|+|.
T Consensus        15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~   94 (444)
T 1g41_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK   94 (444)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence            5799999999999999877665555444331  24678999999999999999999999999999999999888 58985


Q ss_pred             -hHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEec-cCCcccccHH
Q 010975          293 -SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA-TNLPWELDAA  370 (496)
Q Consensus       293 -~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIat-Tn~p~~Ld~a  370 (496)
                       .+..++.+|..+..    ++++||++.+...     ......++++++|+..||++..... +  +++ ||+++.+|++
T Consensus        95 d~e~~lr~lf~~a~~----~~~~De~d~~~~~-----~~~~~e~rvl~~LL~~~dg~~~~~~-v--~a~~TN~~~~ld~a  162 (444)
T 1g41_A           95 EVDSIIRDLTDSAMK----LVRQQEIAKNRAR-----AEDVAEERILDALLPPAKNQWGEVE-N--HDSHSSTRQAFRKK  162 (444)
T ss_dssp             CTHHHHHHHHHHHHH----HHHHHHHHSCC--------------------------------------------------
T ss_pred             cHHHHHHHHHHHHHh----cchhhhhhhhhcc-----chhhHHHHHHHHHHHHhhccccccc-c--ccccccCHHHHHHH
Confidence             89999999998876    5678998775322     2334557899999999999865443 3  455 9999999999


Q ss_pred             HHH--HhhhhhcccCCCHH-HHHHHH
Q 010975          371 MLR--RLEKRILVPLPDTE-ARRAMF  393 (496)
Q Consensus       371 L~r--Rf~~~I~~~~P~~e-eR~~Il  393 (496)
                      |+|  ||++.|++++|+.. .|.+|+
T Consensus       163 L~rggr~D~~i~i~lP~~~~~~~ei~  188 (444)
T 1g41_A          163 LREGQLDDKEIEIDVSAGVSMGVEIM  188 (444)
T ss_dssp             --------------------------
T ss_pred             HHcCCCcceEEEEcCCCCccchhhhh
Confidence            998  99999999999987 666664

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=99.71  E-value=3.6e-18  Score=172.33  Aligned_cols=159  Identities=16%  Similarity=0.113  Sum_probs=119.3

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS  284 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~  284 (496)
                      .|.+++++.+|++++|++++++.|.+.+...           ..++.+|++||||||||++|++++++++.+++.+++++
T Consensus        15 ~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~-----------~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~   83 (324)
T 3u61_B           15 ILEQKYRPSTIDECILPAFDKETFKSITSKG-----------KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD   83 (324)
T ss_dssp             SHHHHSCCCSTTTSCCCHHHHHHHHHHHHTT-----------CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT
T ss_pred             hHHHhhCCCCHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc
Confidence            4667788889999999999999999988631           23356788899999999999999999999999999876


Q ss_pred             ccccccCChHHHHHHHHHHhhhc-----CCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEe
Q 010975          285 VVSKWRGDSEKLIKVLFELARHH-----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA  359 (496)
Q Consensus       285 l~~~~~G~~e~~l~~lf~~a~~~-----~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIa  359 (496)
                      ..       ...++..+......     .+.||+|||+|.+.+            ....+.|+..++..   ...+.+|+
T Consensus        84 ~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~------------~~~~~~L~~~le~~---~~~~~iI~  141 (324)
T 3u61_B           84 CK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL------------AESQRHLRSFMEAY---SSNCSIII  141 (324)
T ss_dssp             CC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG------------HHHHHHHHHHHHHH---GGGCEEEE
T ss_pred             cC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc------------HHHHHHHHHHHHhC---CCCcEEEE
Confidence            42       33444434332222     467999999998741            11234455555532   23456788


Q ss_pred             ccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhC
Q 010975          360 ATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL  397 (496)
Q Consensus       360 tTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l  397 (496)
                      +||.+..+++++++||. .+.++.|+.+++.+|++.++
T Consensus       142 ~~n~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~  178 (324)
T 3u61_B          142 TANNIDGIIKPLQSRCR-VITFGQPTDEDKIEMMKQMI  178 (324)
T ss_dssp             EESSGGGSCTTHHHHSE-EEECCCCCHHHHHHHHHHHH
T ss_pred             EeCCccccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHH
Confidence            99999999999999996 49999999999877766553

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.71  E-value=1.6e-17  Score=155.68  Aligned_cols=207  Identities=17%  Similarity=0.188  Sum_probs=136.7

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-----cceeeee
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNI  280 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v  280 (496)
                      +...+++..|++++|.+++++.+.+.+...            ...+++|+||||||||++++++++++     ...++.+
T Consensus         7 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~   74 (226)
T 2chg_A            7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM   74 (226)
T ss_dssp             HHHHTSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEE
T ss_pred             HHHhcCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEe
Confidence            445567788999999999999999987542            12359999999999999999999986     4557777


Q ss_pred             ecccccccccCChHHHHHHHHHHhh------hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcE
Q 010975          281 SASSVVSKWRGDSEKLIKVLFELAR------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL  354 (496)
Q Consensus       281 ~~s~l~~~~~G~~e~~l~~lf~~a~------~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~  354 (496)
                      +++...+      ...+...+....      ...+.+|+|||+|.+...             ..+.|+..++.   ....
T Consensus        75 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~l~~~l~~---~~~~  132 (226)
T 2chg_A           75 NASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-------------AQAALRRTMEM---YSKS  132 (226)
T ss_dssp             ETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-------------HHHHHHHHHHH---TTTT
T ss_pred             ccccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-------------HHHHHHHHHHh---cCCC
Confidence            7654322      122222222211      245689999999987432             12334444442   2233


Q ss_pred             EEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccH
Q 010975          355 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQP  434 (496)
Q Consensus       355 viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a  434 (496)
                      +.+|++||.+..+++++.+||. .+.+++|+.++...+++.++......              ++...+..+. +.+.++
T Consensus       133 ~~~i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~--------------~~~~~~~~l~-~~~~g~  196 (226)
T 2chg_A          133 CRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVK--------------ITEDGLEALI-YISGGD  196 (226)
T ss_dssp             EEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCC--------------BCHHHHHHHH-HHHTTC
T ss_pred             CeEEEEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCC--------------CCHHHHHHHH-HHcCCC
Confidence            5677788999999999999997 69999999999999999877543222              1112222222 233444


Q ss_pred             HHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhh
Q 010975          435 LRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK  470 (496)
Q Consensus       435 ~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~  470 (496)
                      .+++.+.++......        ..||.+|+++++.
T Consensus       197 ~r~l~~~l~~~~~~~--------~~I~~~~v~~~~~  224 (226)
T 2chg_A          197 FRKAINALQGAAAIG--------EVVDADTIYQITA  224 (226)
T ss_dssp             HHHHHHHHHHHHHTC--------SCBCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC--------ceecHHHHHHHhc
Confidence            454444444332211        2489999999886

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=99.70  E-value=8.5e-18  Score=168.95  Aligned_cols=166  Identities=20%  Similarity=0.215  Sum_probs=120.4

Q ss_pred             CCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc
Q 010975          209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK  288 (496)
Q Consensus       209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~  288 (496)
                      ++.+.+|++++|.+.+++.+.+.+......       ...+.++||+||||||||++|++++++++.+++.++++.+.. 
T Consensus         5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~-   76 (324)
T 1hqc_A            5 ALRPKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK-   76 (324)
T ss_dssp             CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-
T ss_pred             ccCcccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-
Confidence            456678999999999999999887543211       123468999999999999999999999999999998876532 


Q ss_pred             ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc---------------ccCc
Q 010975          289 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDE  353 (496)
Q Consensus       289 ~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~---------------~~~~  353 (496)
                           ...+...+..+ ...+++|||||+|.+....             ...|+..++...               ....
T Consensus        77 -----~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~~-------------~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~  137 (324)
T 1hqc_A           77 -----PGDLAAILANS-LEEGDILFIDEIHRLSRQA-------------EEHLYPAMEDFVMDIVIGQGPAARTIRLELP  137 (324)
T ss_dssp             -----HHHHHHHHTTT-CCTTCEEEETTTTSCCHHH-------------HHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred             -----hHHHHHHHHHh-ccCCCEEEEECCcccccch-------------HHHHHHHHHhhhhHHhccccccccccccCCC
Confidence                 23333333321 1346899999998874321             122333332110               0112


Q ss_pred             EEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975          354 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       354 ~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                      .+.+|++||.+..+++++.+||...+.++.|+.+++..+++.++....
T Consensus       138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~  185 (324)
T 1hqc_A          138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG  185 (324)
T ss_dssp             CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred             CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC
Confidence            467889999999999999999987899999999999999999876543

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.69  E-value=1.6e-17  Score=186.77  Aligned_cols=192  Identities=20%  Similarity=0.282  Sum_probs=134.0

Q ss_pred             HhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh--------
Q 010975          202 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC--------  273 (496)
Q Consensus       202 ~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l--------  273 (496)
                      ..+++...+.+.++++++|.++.++++.+.+...            ..+++||+||||||||++|+++|+.+        
T Consensus       166 ~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~------------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~  233 (758)
T 3pxi_A          166 LARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRR------------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEI  233 (758)
T ss_dssp             SCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCS------------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTT
T ss_pred             HHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCC------------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChh
Confidence            3456666677788999999999999999987542            23689999999999999999999997        


Q ss_pred             --cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcccc
Q 010975          274 --KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS  351 (496)
Q Consensus       274 --~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~  351 (496)
                        +.+++.+++   ..+|.|+++..++.+|..+....|+|||||      +.           ....+.|+..++    +
T Consensus       234 l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD------~~-----------~~~~~~L~~~l~----~  289 (758)
T 3pxi_A          234 LRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID------AA-----------IDASNILKPSLA----R  289 (758)
T ss_dssp             TSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C-------------------CCCTT----S
T ss_pred             hcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc------Cc-----------hhHHHHHHHHHh----c
Confidence              788888887   556789999999999999998889999999      10           112234444443    2


Q ss_pred             CcEEEEEeccCCcc-----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcce-----eeecc-----c
Q 010975          352 DELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDL-----LVERT-----E  416 (496)
Q Consensus       352 ~~~viVIatTn~p~-----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~-----la~~t-----~  416 (496)
                      + .+.+|++||...     .++++++|||.. +.++.|+.+++..|++.++..+...+++.+.+     ++..+     +
T Consensus       290 ~-~v~~I~at~~~~~~~~~~~d~al~rRf~~-i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~  367 (758)
T 3pxi_A          290 G-ELQCIGATTLDEYRKYIEKDAALERRFQP-IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISD  367 (758)
T ss_dssp             S-SCEEEEECCTTTTHHHHTTCSHHHHSEEE-EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCC
T ss_pred             C-CEEEEeCCChHHHHHHhhccHHHHhhCcE-EEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccc
Confidence            2 366788888776     699999999965 99999999999999999887755444444332     33333     3


Q ss_pred             CCcCCchhhcchhhh
Q 010975          417 GYSGSDIRLVSKEAA  431 (496)
Q Consensus       417 g~s~~dI~~l~~~A~  431 (496)
                      ++.++....++.+|+
T Consensus       368 ~~~p~~ai~ll~~a~  382 (758)
T 3pxi_A          368 RFLPDKAIDLIDEAG  382 (758)
T ss_dssp             SCTTHHHHHHHHHHH
T ss_pred             CcCCcHHHHHHHHHH
Confidence            444555555555554

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=99.67  E-value=8.1e-17  Score=160.70  Aligned_cols=166  Identities=21%  Similarity=0.199  Sum_probs=120.9

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-----cceeee
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFN  279 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~  279 (496)
                      .|.+++++.+|++++|++++++.|.+.+...            ...++||+||||||||++|+++++.+     +.+++.
T Consensus         6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~   73 (319)
T 2chq_A            6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIE   73 (319)
T ss_dssp             CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTT------------CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEE
T ss_pred             cHHHhcCCCCHHHHhCCHHHHHHHHHHHhCC------------CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEE
Confidence            4567788889999999999999999887531            11359999999999999999999987     456788


Q ss_pred             eecccccccccCChHHHHHHHHHHhh--hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEE
Q 010975          280 ISASSVVSKWRGDSEKLIKVLFELAR--HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV  357 (496)
Q Consensus       280 v~~s~l~~~~~G~~e~~l~~lf~~a~--~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV  357 (496)
                      +++++..+.  ......+........  ...+.||+|||+|.+...             ..+.|+..++.   ....+.+
T Consensus        74 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~L~~~le~---~~~~~~~  135 (319)
T 2chq_A           74 MNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-------------AQAALRRTMEM---YSKSCRF  135 (319)
T ss_dssp             EETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH-------------HHHTTGGGTSS---SSSSEEE
T ss_pred             EeCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH-------------HHHHHHHHHHh---cCCCCeE
Confidence            887764321  122222333221111  134689999999987322             23456666653   2344667


Q ss_pred             EeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975          358 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       358 IatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                      |++||.+..+.+++.+|+. .+.+++|+.++...+++..+....
T Consensus       136 i~~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~  178 (319)
T 2chq_A          136 ILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEG  178 (319)
T ss_dssp             EEEESCGGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHTTC
T ss_pred             EEEeCChhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHHcC
Confidence            7888999999999999997 599999999999999998876543

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.67  E-value=8.2e-18  Score=189.06  Aligned_cols=231  Identities=23%  Similarity=0.291  Sum_probs=154.1

Q ss_pred             hhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----------cce
Q 010975          207 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTT  276 (496)
Q Consensus       207 ~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----------~~~  276 (496)
                      .....+.+|++++|.++.++++.+.+...            ..+++||+||||||||++|+++|+.+          +.+
T Consensus       177 ~~~~~~~~~d~~iGr~~~i~~l~~~l~~~------------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~  244 (758)
T 1r6b_X          177 NQLARVGGIDPLIGREKELERAIQVLCRR------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCT  244 (758)
T ss_dssp             HHHHHTTCSCCCCSCHHHHHHHHHHHTSS------------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCE
T ss_pred             HHHHhcCCCCCccCCHHHHHHHHHHHhcc------------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCE
Confidence            33334557999999999999999887542            23689999999999999999999987          667


Q ss_pred             eeeeeccccc--ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcE
Q 010975          277 FFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL  354 (496)
Q Consensus       277 ~i~v~~s~l~--~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~  354 (496)
                      ++.++++.+.  ..+.|..+..++.++..+....++||||||+|.+.+.........+    ..+.|...++    .+ .
T Consensus       245 ~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~----~~~~L~~~l~----~~-~  315 (758)
T 1r6b_X          245 IYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD----AANLIKPLLS----SG-K  315 (758)
T ss_dssp             EEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHH----HHHHHSSCSS----SC-C
T ss_pred             EEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHH----HHHHHHHHHh----CC-C
Confidence            8888887776  4688999999999999998877899999999999765433212221    2222323332    22 3


Q ss_pred             EEEEeccCCcc-----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCC-----CcceeeecccCCc-----
Q 010975          355 VFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-----PYDLLVERTEGYS-----  419 (496)
Q Consensus       355 viVIatTn~p~-----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~-----~l~~la~~t~g~s-----  419 (496)
                      +.+|++|+.++     .+|+++.+||. .+.++.|+.+++.+|++.++......+..     .+..++..+.+|.     
T Consensus       316 ~~~I~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~l  394 (758)
T 1r6b_X          316 IRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHL  394 (758)
T ss_dssp             CEEEEEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCT
T ss_pred             eEEEEEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccC
Confidence            56777777653     47889999998 49999999999999999876542211111     2333444444433     


Q ss_pred             CCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCC
Q 010975          420 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR  473 (496)
Q Consensus       420 ~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~  473 (496)
                      +..+..++.+|+...  +    +.      +..  .....|+.+|+..++....
T Consensus       395 p~~~i~lld~a~~~~--~----~~------~~~--~~~~~v~~~di~~~~~~~~  434 (758)
T 1r6b_X          395 PDKAIDVIDEAGARA--R----LM------PVS--KRKKTVNVADIESVVARIA  434 (758)
T ss_dssp             THHHHHHHHHHHHHH--H----HS------SSC--CCCCSCCHHHHHHHHHHHS
T ss_pred             chHHHHHHHHHHHHH--h----cc------ccc--ccCCccCHHHHHHHHHHhc
Confidence            334444555443211  1    00      000  1123589999999988753

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.66  E-value=2.2e-16  Score=161.40  Aligned_cols=169  Identities=20%  Similarity=0.188  Sum_probs=117.1

Q ss_pred             CccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeecc
Q 010975          213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISAS  283 (496)
Q Consensus       213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s  283 (496)
                      ...++++|.++.++.+.+.+......        ..+.+++|+||||||||++++++++.+         +.+++.+++.
T Consensus        16 ~~p~~~~gr~~~~~~l~~~l~~~~~~--------~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~   87 (387)
T 2v1u_A           16 YVPDVLPHREAELRRLAEVLAPALRG--------EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR   87 (387)
T ss_dssp             CCCSCCTTCHHHHHHHHHTTGGGTSS--------CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence            34578999999999999987543211        234689999999999999999999988         7889999986


Q ss_pred             ccccc----------------ccCC-hHHHHHHHHHHhhh-cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhc
Q 010975          284 SVVSK----------------WRGD-SEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM  345 (496)
Q Consensus       284 ~l~~~----------------~~G~-~e~~l~~lf~~a~~-~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~l  345 (496)
                      ...+.                ..|. .......++..... ..|.||+|||+|.+....        .....+..++..+
T Consensus        88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~--------~~~~~l~~l~~~~  159 (387)
T 2v1u_A           88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP--------GGQDLLYRITRIN  159 (387)
T ss_dssp             TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST--------THHHHHHHHHHGG
T ss_pred             cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC--------CCChHHHhHhhch
Confidence            54321                1122 22334445544433 336799999999996431        0122334444444


Q ss_pred             cCccccCcEEEEEeccCCc---ccccHHHHHHhhh-hhcccCCCHHHHHHHHHhhCC
Q 010975          346 DGLTQSDELVFVLAATNLP---WELDAAMLRRLEK-RILVPLPDTEARRAMFESLLP  398 (496)
Q Consensus       346 d~~~~~~~~viVIatTn~p---~~Ld~aL~rRf~~-~I~~~~P~~eeR~~Il~~~l~  398 (496)
                      +.... ...+.+|++||.+   +.+++++.+||.. .+.+++|+.++..++++..+.
T Consensus       160 ~~~~~-~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~  215 (387)
T 2v1u_A          160 QELGD-RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAE  215 (387)
T ss_dssp             GCC------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred             hhcCC-CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence            32210 3456778888877   6789999999975 799999999999999998864

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=99.66  E-value=6.6e-17  Score=170.98  Aligned_cols=222  Identities=17%  Similarity=0.252  Sum_probs=132.1

Q ss_pred             CCCCccchhh-cchH--HHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-----cceeeeee
Q 010975          210 SPDVKWESIK-GLEN--AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS  281 (496)
Q Consensus       210 ~~~~~l~dli-G~e~--vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~  281 (496)
                      .|..+|++++ |...  +...+......+.          . .++++|+||||+|||+||+++++.+     +.+++.++
T Consensus        99 ~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~----------~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~  167 (440)
T 2z4s_A           99 NPDYTFENFVVGPGNSFAYHAALEVAKHPG----------R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT  167 (440)
T ss_dssp             CTTCSGGGCCCCTTTHHHHHHHHHHHHSTT----------S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred             CCCCChhhcCCCCchHHHHHHHHHHHhCCC----------C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence            4556799977 6433  3444444333221          1 3689999999999999999999988     78889999


Q ss_pred             cccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEecc
Q 010975          282 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT  361 (496)
Q Consensus       282 ~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatT  361 (496)
                      +..+...+.+.........|.......+.||||||+|.+....           .....++..++.....+ ..+|+++.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~-----------~~q~~l~~~l~~l~~~~-~~iIitt~  235 (440)
T 2z4s_A          168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT-----------GVQTELFHTFNELHDSG-KQIVICSD  235 (440)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH-----------HHHHHHHHHHHHHHTTT-CEEEEEES
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh-----------HHHHHHHHHHHHHHHCC-CeEEEEEC
Confidence            8876544332222111112222222257899999999885321           11233444443322233 34455555


Q ss_pred             CCccc---ccHHHHHHhh--hhhcccCCCHHHHHHHHHhhCCCCCCCC-CCCcceeeecccCCcCCchhhcchhhhccHH
Q 010975          362 NLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPL  435 (496)
Q Consensus       362 n~p~~---Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~~~~~~~-~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~  435 (496)
                      +.+..   +++++++||.  ..+.+++|+.++|..|++..+....... +..++.++..+.| +.+++..+++.+...+.
T Consensus       236 ~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~  314 (440)
T 2z4s_A          236 REPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKE  314 (440)
T ss_dssp             SCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            55654   8899999996  6799999999999999998875433221 1113334443332 11222222222221110


Q ss_pred             HHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCC
Q 010975          436 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP  474 (496)
Q Consensus       436 rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~P  474 (496)
                            .         .    ..+||.+++.++++...+
T Consensus       315 ------~---------~----~~~It~~~~~~~l~~~~~  334 (440)
T 2z4s_A          315 ------T---------T----GKEVDLKEAILLLKDFIK  334 (440)
T ss_dssp             ------H---------S----SSCCCHHHHHHHTSTTTC
T ss_pred             ------H---------h----CCCCCHHHHHHHHHHHhh
Confidence                  0         0    124899999999988764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.65  E-value=3.8e-17  Score=154.73  Aligned_cols=167  Identities=19%  Similarity=0.194  Sum_probs=113.9

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeee--ec-
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI--SA-  282 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v--~~-  282 (496)
                      +...+.+..+++++|.+..++.|.+.+...           ..++.++|+||||+|||++++++++.++......  .+ 
T Consensus        13 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~   81 (250)
T 1njg_A           13 LARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG   81 (250)
T ss_dssp             HHHHTCCCSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCS
T ss_pred             HhhccCCccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCc
Confidence            455667778999999999999999887532           1234799999999999999999999885422110  00 


Q ss_pred             -------------ccccccc--cCChHHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhh
Q 010975          283 -------------SSVVSKW--RGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI  343 (496)
Q Consensus       283 -------------s~l~~~~--~G~~e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~  343 (496)
                                   .++....  .......++.++..+.    ...+.+|+|||+|.+..             ...+.|+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~-------------~~~~~l~~  148 (250)
T 1njg_A           82 VCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-------------HSFNALLK  148 (250)
T ss_dssp             CSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-------------HHHHHHHH
T ss_pred             ccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccH-------------HHHHHHHH
Confidence                         0011000  0112334555665543    23468999999988621             12344555


Q ss_pred             hccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCC
Q 010975          344 QMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ  400 (496)
Q Consensus       344 ~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~  400 (496)
                      .++..   ...+.+|++|+.+..+++++.+|+ ..+.+++++.++..++++.++...
T Consensus       149 ~l~~~---~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~  201 (250)
T 1njg_A          149 TLEEP---PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEE  201 (250)
T ss_dssp             HHHSC---CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHT
T ss_pred             HHhcC---CCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhc
Confidence            55532   334667778888888999999997 459999999999999999887543

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.65  E-value=8.1e-17  Score=163.36  Aligned_cols=166  Identities=16%  Similarity=0.192  Sum_probs=115.1

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc------eee
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------TFF  278 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~------~~i  278 (496)
                      .+.+++++.+|++++|.+++++.|...+...            ...+++|+||||||||++|+++++.++.      .++
T Consensus        26 ~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~   93 (353)
T 1sxj_D           26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRIL   93 (353)
T ss_dssp             CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCT------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred             cHHHhcCCCCHHHhhCCHHHHHHHHHHHhcC------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceE
Confidence            4666788889999999999999999887432            1135999999999999999999998753      477


Q ss_pred             eeecccccccccCChHHHHHHHHHH------------hhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc
Q 010975          279 NISASSVVSKWRGDSEKLIKVLFEL------------ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD  346 (496)
Q Consensus       279 ~v~~s~l~~~~~G~~e~~l~~lf~~------------a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld  346 (496)
                      .+++++..+.  +.....+......            .....+.||+|||+|.+...             ..+.|+..++
T Consensus        94 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-------------~~~~Ll~~le  158 (353)
T 1sxj_D           94 ELNASDERGI--SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-------------AQSALRRTME  158 (353)
T ss_dssp             EECSSSCCCH--HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-------------HHHHHHHHHH
T ss_pred             EEccccccch--HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-------------HHHHHHHHHH
Confidence            7777654211  0011111111110            01123469999999987432             2244566665


Q ss_pred             CccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975          347 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       347 ~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                      ...   ..+.+|.+||.+..+.+++++|+. .+.+++|+.++...+++..+....
T Consensus       159 ~~~---~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~  209 (353)
T 1sxj_D          159 TYS---GVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQEN  209 (353)
T ss_dssp             HTT---TTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTT
T ss_pred             hcC---CCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhC
Confidence            322   224456678899999999999997 589999999999999998875443

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=99.65  E-value=3.4e-17  Score=149.84  Aligned_cols=155  Identities=23%  Similarity=0.350  Sum_probs=110.3

Q ss_pred             CCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----------cceee
Q 010975          209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFF  278 (496)
Q Consensus       209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----------~~~~i  278 (496)
                      ...+..+++++|.++..+.+.+.+...            ...+++|+||||||||++|+++++.+          +.+++
T Consensus        15 ~~~~~~~~~~~g~~~~~~~l~~~l~~~------------~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~   82 (187)
T 2p65_A           15 LARAGKLDPVIGRDTEIRRAIQILSRR------------TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLV   82 (187)
T ss_dssp             HHHTTCSCCCCSCHHHHHHHHHHHTSS------------SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEE
T ss_pred             HHhccccchhhcchHHHHHHHHHHhCC------------CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEE
Confidence            334556899999999999988877431            23689999999999999999999987          77888


Q ss_pred             eeecccccc--cccCChHHHHHHHHHHhhhc-CCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEE
Q 010975          279 NISASSVVS--KWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV  355 (496)
Q Consensus       279 ~v~~s~l~~--~~~G~~e~~l~~lf~~a~~~-~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~v  355 (496)
                      .+++..+..  .+.+.....+..++..+... .|.+|+|||+|.+.+.+.....    ...+.+.+...++     ...+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~----~~~~~~~l~~~~~-----~~~~  153 (187)
T 2p65_A           83 SLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEG----ALDAGNILKPMLA-----RGEL  153 (187)
T ss_dssp             EECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTT----SCCTHHHHHHHHH-----TTCS
T ss_pred             EEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccccc----chHHHHHHHHHHh-----cCCe
Confidence            888776653  24455566677777776654 5679999999998644321111    1122233333332     1335


Q ss_pred             EEEeccCCcc-----cccHHHHHHhhhhhcccCCC
Q 010975          356 FVLAATNLPW-----ELDAAMLRRLEKRILVPLPD  385 (496)
Q Consensus       356 iVIatTn~p~-----~Ld~aL~rRf~~~I~~~~P~  385 (496)
                      .+|+++|.+.     .+++++++||.. +.++.|+
T Consensus       154 ~ii~~~~~~~~~~~~~~~~~l~~R~~~-i~i~~p~  187 (187)
T 2p65_A          154 RCIGATTVSEYRQFIEKDKALERRFQQ-ILVEQPS  187 (187)
T ss_dssp             CEEEEECHHHHHHHTTTCHHHHHHEEE-EECCSCC
T ss_pred             eEEEecCHHHHHHHHhccHHHHHhcCc-ccCCCCC
Confidence            6788888775     589999999986 8888885

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.64  E-value=4.9e-16  Score=159.41  Aligned_cols=217  Identities=21%  Similarity=0.209  Sum_probs=139.4

Q ss_pred             cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-----------cceeeeeecc
Q 010975          215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----------KTTFFNISAS  283 (496)
Q Consensus       215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-----------~~~~i~v~~s  283 (496)
                      .++++|.++.++.+.+.+......        ..+++++|+||||||||++|+++++++           +.+++.+++.
T Consensus        19 p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~   90 (384)
T 2qby_B           19 FKEIPFREDILRDAAIAIRYFVKN--------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR   90 (384)
T ss_dssp             CSSCTTCHHHHHHHHHHHHHHHTT--------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred             CCCCCChHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence            378999999999999887543321        234689999999999999999999988           8899999976


Q ss_pred             ccc-cc-----------------ccCC-hHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhh-hhhhhh
Q 010975          284 SVV-SK-----------------WRGD-SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRL-KTELLI  343 (496)
Q Consensus       284 ~l~-~~-----------------~~G~-~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i-~~~Ll~  343 (496)
                      ... ..                 ..+. ....+..++..+....+ ||+|||+|.+.....         ... +..|+.
T Consensus        91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~---------~~~~l~~l~~  160 (384)
T 2qby_B           91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG---------GDIVLYQLLR  160 (384)
T ss_dssp             HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT---------SHHHHHHHHT
T ss_pred             cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCC---------CceeHHHHhc
Confidence            543 10                 1111 12334455555554444 999999999964321         111 223332


Q ss_pred             hccCccccCcEEEEEeccCCc---ccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcC
Q 010975          344 QMDGLTQSDELVFVLAATNLP---WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSG  420 (496)
Q Consensus       344 ~ld~~~~~~~~viVIatTn~p---~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~  420 (496)
                      ..       ..+.+|++||.+   +.+++++.+||...+.+++|+.++..++++..+.......            .++.
T Consensus       161 ~~-------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~------------~~~~  221 (384)
T 2qby_B          161 SD-------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKG------------TYDD  221 (384)
T ss_dssp             SS-------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTT------------SCCS
T ss_pred             CC-------cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccC------------CcCH
Confidence            22       456788888877   6789999999977899999999999999998764211000            1122


Q ss_pred             Cchhhcchhhh--ccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCC
Q 010975          421 SDIRLVSKEAA--MQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR  473 (496)
Q Consensus       421 ~dI~~l~~~A~--~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~  473 (496)
                      ..+..+++.++  .+.+|++++.++.....+.     ....|+.+|+..++....
T Consensus       222 ~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~-----~~~~i~~~~v~~~~~~~~  271 (384)
T 2qby_B          222 EILSYIAAISAKEHGDARKAVNLLFRAAQLAS-----GGGIIRKEHVDKAIVDYE  271 (384)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-----SSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc-----CCCccCHHHHHHHHHHHh
Confidence            22333333322  2444444444333322222     113489999999888764

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=99.64  E-value=1.3e-16  Score=161.09  Aligned_cols=168  Identities=21%  Similarity=0.265  Sum_probs=111.1

Q ss_pred             CCCCccchhh-c--chHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecc
Q 010975          210 SPDVKWESIK-G--LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS  283 (496)
Q Consensus       210 ~~~~~l~dli-G--~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s  283 (496)
                      .+..+|++++ |  .......+...+..+.          ..+++++|+||||||||++|+++++.+   +.+++.+++.
T Consensus         5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~~----------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~   74 (324)
T 1l8q_A            5 NPKYTLENFIVGEGNRLAYEVVKEALENLG----------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD   74 (324)
T ss_dssp             CTTCCSSSCCCCTTTHHHHHHHHHHHHTTT----------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             CCCCCcccCCCCCcHHHHHHHHHHHHhCcC----------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence            3566788987 4  3445555555543321          134689999999999999999999998   8899999998


Q ss_pred             cccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCC
Q 010975          284 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL  363 (496)
Q Consensus       284 ~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~  363 (496)
                      ++...+.+.........|.... ..+++|||||+|.+..+.           .....++..++.....+ ..+|+++++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~-----------~~~~~l~~~l~~~~~~~-~~iii~~~~~  141 (324)
T 1l8q_A           75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE-----------RTQIEFFHIFNTLYLLE-KQIILASDRH  141 (324)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH-----------HHHHHHHHHHHHHHHTT-CEEEEEESSC
T ss_pred             HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh-----------HHHHHHHHHHHHHHHCC-CeEEEEecCC
Confidence            8765544332222112222222 236899999999885321           11222333333222222 3456667777


Q ss_pred             cc---cccHHHHHHhh--hhhcccCCCHHHHHHHHHhhCCCCC
Q 010975          364 PW---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       364 p~---~Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                      +.   .+++++.+||.  ..+.+++ +.+++..+++..+....
T Consensus       142 ~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~  183 (324)
T 1l8q_A          142 PQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFN  183 (324)
T ss_dssp             GGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcC
Confidence            76   58999999996  5688888 99999999999886543

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.64  E-value=6.1e-17  Score=174.52  Aligned_cols=182  Identities=17%  Similarity=0.147  Sum_probs=118.5

Q ss_pred             hhhhhCCCCCccchhhcchHHHHHHhhhhcccccC-ccccccc----cCccceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975          204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKY-PKYFTGL----LSPWKGILLFGPPGTGKTMLAKAVATECKTTFF  278 (496)
Q Consensus       204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~-~~~~~~~----~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i  278 (496)
                      ..|.+++++.+|++++|.+++++.|.+++...... +..+...    ..+++++||+||||||||++|+++|++++.+++
T Consensus        27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i  106 (516)
T 1sxj_A           27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL  106 (516)
T ss_dssp             CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence            45778888999999999999999999988652211 1111111    124578999999999999999999999999999


Q ss_pred             eeecccccccccCChH-------HHHHHHHHHh-----hhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc
Q 010975          279 NISASSVVSKWRGDSE-------KLIKVLFELA-----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD  346 (496)
Q Consensus       279 ~v~~s~l~~~~~G~~e-------~~l~~lf~~a-----~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld  346 (496)
                      .+++++..........       ..+..+|..+     ....+.||||||+|.+....+          .....|+..++
T Consensus       107 ~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~----------~~l~~L~~~l~  176 (516)
T 1sxj_A          107 EQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR----------GGVGQLAQFCR  176 (516)
T ss_dssp             EECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST----------THHHHHHHHHH
T ss_pred             EEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH----------HHHHHHHHHHH
Confidence            9999876543211000       0011222222     124568999999999854311          11234444443


Q ss_pred             CccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCC
Q 010975          347 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ  400 (496)
Q Consensus       347 ~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~  400 (496)
                      .   ....+++++++.....+. ++.+|+ ..+.|+.|+.+++.++++..+...
T Consensus       177 ~---~~~~iIli~~~~~~~~l~-~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~  225 (516)
T 1sxj_A          177 K---TSTPLILICNERNLPKMR-PFDRVC-LDIQFRRPDANSIKSRLMTIAIRE  225 (516)
T ss_dssp             H---CSSCEEEEESCTTSSTTG-GGTTTS-EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred             h---cCCCEEEEEcCCCCccch-hhHhce-EEEEeCCCCHHHHHHHHHHHHHHc
Confidence            2   223355555444434444 355555 469999999999999998876543

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=99.63  E-value=8.2e-17  Score=160.82  Aligned_cols=206  Identities=22%  Similarity=0.278  Sum_probs=133.5

Q ss_pred             chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccc---
Q 010975          216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW---  289 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~---  289 (496)
                      ++++|++.+++.+...+.......   .....+..+++|+||||||||++|+++|+.+   +.+++.++++.+....   
T Consensus        17 ~~i~G~~~~~~~l~~~i~~~~~~~---~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~   93 (311)
T 4fcw_A           17 KRVVGQDEAIRAVADAIRRARAGL---KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS   93 (311)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTC---SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred             hhcCCHHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence            468999999999998885532110   0011233579999999999999999999998   5679999987664321   


Q ss_pred             --c-------CChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc--------ccC
Q 010975          290 --R-------GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSD  352 (496)
Q Consensus       290 --~-------G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~  352 (496)
                        .       |....  ..+.........+||||||+|.+..             .+++.|+..++...        ...
T Consensus        94 ~l~g~~~~~~~~~~~--~~~~~~~~~~~~~vl~lDEi~~l~~-------------~~~~~Ll~~le~~~~~~~~~~~~~~  158 (311)
T 4fcw_A           94 RLIGAPPGYVGYEEG--GQLTEAVRRRPYSVILFDAIEKAHP-------------DVFNILLQMLDDGRLTDSHGRTVDF  158 (311)
T ss_dssp             HHHCCCTTSTTTTTC--CHHHHHHHHCSSEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEECTTSCEEEC
T ss_pred             HhcCCCCcccccccc--chHHHHHHhCCCeEEEEeChhhcCH-------------HHHHHHHHHHhcCEEEcCCCCEEEC
Confidence              1       11110  1122222333448999999988732             23345555554321        111


Q ss_pred             cEEEEEeccCC--------------------------cccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC----
Q 010975          353 ELVFVLAATNL--------------------------PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG----  402 (496)
Q Consensus       353 ~~viVIatTn~--------------------------p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~----  402 (496)
                      .++++|+|||.                          ...+++++++||+..+.+++|+.+++..|++.++.....    
T Consensus       159 ~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~  238 (311)
T 4fcw_A          159 RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAE  238 (311)
T ss_dssp             TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHT
T ss_pred             CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            24668899998                          446888999999988999999999999999998754311    


Q ss_pred             ---CC---CCCcceeeeccc--CCcCCchhhcchhhhccHHHHHH
Q 010975          403 ---EE---SLPYDLLVERTE--GYSGSDIRLVSKEAAMQPLRRLM  439 (496)
Q Consensus       403 ---~~---~~~l~~la~~t~--g~s~~dI~~l~~~A~~~a~rR~~  439 (496)
                         ..   +..++.+++..-  ....++++.+++.+...++.+.+
T Consensus       239 ~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i  283 (311)
T 4fcw_A          239 KRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI  283 (311)
T ss_dssp             TTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHH
T ss_pred             CCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHH
Confidence               10   111222333322  34567777778777776665544

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=99.62  E-value=1.8e-16  Score=151.28  Aligned_cols=157  Identities=16%  Similarity=0.165  Sum_probs=104.3

Q ss_pred             CCccchhhc---chHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc---ceeeeeecccc
Q 010975          212 DVKWESIKG---LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSV  285 (496)
Q Consensus       212 ~~~l~dliG---~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~s~l  285 (496)
                      ..+|++++|   .+.+.+.+...+..+            ..++++|+||||||||++|+++++++.   .+++.+++.++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~   91 (242)
T 3bos_A           24 DETFTSYYPAAGNDELIGALKSAASGD------------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH   91 (242)
T ss_dssp             TCSTTTSCC--CCHHHHHHHHHHHHTC------------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             CCChhhccCCCCCHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence            467888886   246666666655431            236899999999999999999999884   67888888776


Q ss_pred             cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc
Q 010975          286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW  365 (496)
Q Consensus       286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~  365 (496)
                      .......        +..  ...+.+|+|||+|.+....           .....++..++.........+|++++..+.
T Consensus        92 ~~~~~~~--------~~~--~~~~~vliiDe~~~~~~~~-----------~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~  150 (242)
T 3bos_A           92 ASISTAL--------LEG--LEQFDLICIDDVDAVAGHP-----------LWEEAIFDLYNRVAEQKRGSLIVSASASPM  150 (242)
T ss_dssp             GGSCGGG--------GTT--GGGSSEEEEETGGGGTTCH-----------HHHHHHHHHHHHHHHHCSCEEEEEESSCTT
T ss_pred             HHHHHHH--------HHh--ccCCCEEEEeccccccCCH-----------HHHHHHHHHHHHHHHcCCCeEEEEcCCCHH
Confidence            5543211        111  1346899999999874321           012234444433222222224444444443


Q ss_pred             ---cccHHHHHHhh--hhhcccCCCHHHHHHHHHhhCCCCC
Q 010975          366 ---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       366 ---~Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                         .+++++.+||.  ..+.++.|+.+++.++++.++....
T Consensus       151 ~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~  191 (242)
T 3bos_A          151 EAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRG  191 (242)
T ss_dssp             TTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTT
T ss_pred             HHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcC
Confidence               45689999996  6799999999999999999876443

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=99.62  E-value=3.2e-16  Score=161.76  Aligned_cols=180  Identities=21%  Similarity=0.326  Sum_probs=113.8

Q ss_pred             chhhcchHHHHHHhhhhcccccCccc------------------cccccCccceeeeeCCCCChhHHHHHHHHhhhccee
Q 010975          216 ESIKGLENAKRLLKEAVVMPIKYPKY------------------FTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF  277 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~~~~~~------------------~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~  277 (496)
                      +.|+|++++|+.|...+..+......                  ......++.++||+||||||||++|+++|+.++.++
T Consensus        21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~  100 (376)
T 1um8_A           21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI  100 (376)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred             hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            35899999999999887432222111                  011123456899999999999999999999999999


Q ss_pred             eeeeccccc-ccccCCh-HHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCcchhHH-hhhhhhhhhhhccCccc
Q 010975          278 FNISASSVV-SKWRGDS-EKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEA-SRRLKTELLIQMDGLTQ  350 (496)
Q Consensus       278 i~v~~s~l~-~~~~G~~-e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~~~~~~-~~~i~~~Ll~~ld~~~~  350 (496)
                      +.+++..+. ..+.|.. ...+..++..+.    ...++||||||+|.+...+.......+. ...+++.|+..|++...
T Consensus       101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~  180 (376)
T 1um8_A          101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV  180 (376)
T ss_dssp             EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred             EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence            999998875 3455543 445556655432    2356899999999997663322111111 12366778888874310


Q ss_pred             ------------------cCcEEEEEeccCC-----------------------------------------cccccHHH
Q 010975          351 ------------------SDELVFVLAATNL-----------------------------------------PWELDAAM  371 (496)
Q Consensus       351 ------------------~~~~viVIatTn~-----------------------------------------p~~Ld~aL  371 (496)
                                        ...++++|+++|.                                         ...+.+++
T Consensus       181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l  260 (376)
T 1um8_A          181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL  260 (376)
T ss_dssp             C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred             ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence                              0123456666652                                         11256888


Q ss_pred             HHHhhhhhcccCCCHHHHHHHHHh
Q 010975          372 LRRLEKRILVPLPDTEARRAMFES  395 (496)
Q Consensus       372 ~rRf~~~I~~~~P~~eeR~~Il~~  395 (496)
                      .+||+.++.+++++.++...|+..
T Consensus       261 ~~R~~~~i~~~~l~~~~l~~i~~~  284 (376)
T 1um8_A          261 IGRLPVLSTLDSISLEAMVDILQK  284 (376)
T ss_dssp             HTTCCEEEECCCCCHHHHHHHHHS
T ss_pred             hcCCCceeeccCCCHHHHHHHHhh
Confidence            889988899999999999999874

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.61  E-value=1.3e-16  Score=181.64  Aligned_cols=178  Identities=20%  Similarity=0.322  Sum_probs=122.2

Q ss_pred             HHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh------
Q 010975          200 ESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------  273 (496)
Q Consensus       200 ~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l------  273 (496)
                      ++...++.....+.++++++|.++.++++.+.+...            ..++++|+||||||||++|+++|+.+      
T Consensus       154 ~~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~------------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p  221 (854)
T 1qvr_A          154 EQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRR------------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVP  221 (854)
T ss_dssp             HHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCS------------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSC
T ss_pred             HHHHHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcC------------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCc
Confidence            344556666667788999999999999999877442            23689999999999999999999988      


Q ss_pred             ----cceeeeeeccccc--ccccCChHHHHHHHHHHhhhc-CCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc
Q 010975          274 ----KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD  346 (496)
Q Consensus       274 ----~~~~i~v~~s~l~--~~~~G~~e~~l~~lf~~a~~~-~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld  346 (496)
                          +.+++.++++.+.  ..+.|+.+..++.++..+... .|+||||||+|.+.+..... +.    ..+.+.|...++
T Consensus       222 ~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~-g~----~~~~~~L~~~l~  296 (854)
T 1qvr_A          222 EGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE-GA----VDAGNMLKPALA  296 (854)
T ss_dssp             TTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC------------------------HHHHH
T ss_pred             hhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc-ch----HHHHHHHHHHHh
Confidence                7899999998887  468889999999999988864 67899999999997653321 11    112223333332


Q ss_pred             CccccCcEEEEEeccCCcc----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCC
Q 010975          347 GLTQSDELVFVLAATNLPW----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ  400 (496)
Q Consensus       347 ~~~~~~~~viVIatTn~p~----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~  400 (496)
                          . ..+.+|++||.++    .+++++.+||+. +.++.|+.+++..|++.++..+
T Consensus       297 ----~-~~i~~I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~~~  348 (854)
T 1qvr_A          297 ----R-GELRLIGATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKY  348 (854)
T ss_dssp             ----T-TCCCEEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHHHHH
T ss_pred             ----C-CCeEEEEecCchHHhhhccCHHHHhCCce-EEeCCCCHHHHHHHHHhhhhhh
Confidence                2 2355777887764    478999999986 9999999999999998776543

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=99.60  E-value=8e-16  Score=153.99  Aligned_cols=167  Identities=21%  Similarity=0.205  Sum_probs=117.6

Q ss_pred             hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc-----ceee
Q 010975          204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFF  278 (496)
Q Consensus       204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~-----~~~i  278 (496)
                      ..+.+++++.+|++++|++++++.|...+...            ...++||+||||||||++|+++++.+.     ..++
T Consensus        13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~   80 (327)
T 1iqp_A           13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFL   80 (327)
T ss_dssp             SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEE
T ss_pred             CchhhccCCCCHHHhhCCHHHHHHHHHHHHcC------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceE
Confidence            35667788889999999999999999877532            123699999999999999999999873     3477


Q ss_pred             eeecccccccccCChHHHHHHHHHHh--hhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEE
Q 010975          279 NISASSVVSKWRGDSEKLIKVLFELA--RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF  356 (496)
Q Consensus       279 ~v~~s~l~~~~~G~~e~~l~~lf~~a--~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi  356 (496)
                      .+++++..+.  ......+.......  ....+.||+|||+|.+...             ..+.|+..++.   ....+.
T Consensus        81 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~L~~~le~---~~~~~~  142 (327)
T 1iqp_A           81 ELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD-------------AQQALRRTMEM---FSSNVR  142 (327)
T ss_dssp             EEETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH-------------HHHHHHHHHHH---TTTTEE
T ss_pred             EeeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH-------------HHHHHHHHHHh---cCCCCe
Confidence            7776554221  11112222222111  1134679999999987322             23445555552   223356


Q ss_pred             EEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975          357 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       357 VIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                      +|++||.+..+.+++.+|+. .+.+++|+.++...+++..+....
T Consensus       143 ~i~~~~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~  186 (327)
T 1iqp_A          143 FILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEG  186 (327)
T ss_dssp             EEEEESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTT
T ss_pred             EEEEeCCccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcC
Confidence            77788999999999999997 589999999999999998876543

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=99.59  E-value=2.4e-16  Score=159.62  Aligned_cols=157  Identities=21%  Similarity=0.219  Sum_probs=106.9

Q ss_pred             CCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc------c
Q 010975          212 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS------V  285 (496)
Q Consensus       212 ~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~------l  285 (496)
                      +..+++++|++++++.+...+..              ..++||+||||||||++|+++|+.++.+++.+++..      +
T Consensus        23 ~~~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l   88 (331)
T 2r44_A           23 DEVGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDL   88 (331)
T ss_dssp             HHHTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHH
T ss_pred             HHhccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhc
Confidence            33468899999999998877643              258999999999999999999999999999888731      2


Q ss_pred             cccccCChHHHHHHHHHHhhhcC---CcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC-------c-cccCcE
Q 010975          286 VSKWRGDSEKLIKVLFELARHHA---PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-------L-TQSDEL  354 (496)
Q Consensus       286 ~~~~~G~~e~~l~~lf~~a~~~~---p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~-------~-~~~~~~  354 (496)
                      .+........   ..+  .....   .+||||||+|.+...             ..+.|+..++.       . ...+..
T Consensus        89 ~g~~~~~~~~---~~~--~~~~g~l~~~vl~iDEi~~~~~~-------------~~~~Ll~~l~~~~~~~~g~~~~~~~~  150 (331)
T 2r44_A           89 IGTMIYNQHK---GNF--EVKKGPVFSNFILADEVNRSPAK-------------VQSALLECMQEKQVTIGDTTYPLDNP  150 (331)
T ss_dssp             HEEEEEETTT---TEE--EEEECTTCSSEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEETTEEEECCSS
T ss_pred             CCceeecCCC---Cce--EeccCcccccEEEEEccccCCHH-------------HHHHHHHHHhcCceeeCCEEEECCCC
Confidence            2111100000   000  00111   269999999986432             22333333331       1 112334


Q ss_pred             EEEEeccCCcc-----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCC
Q 010975          355 VFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ  400 (496)
Q Consensus       355 viVIatTn~p~-----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~  400 (496)
                      ++||+|+|..+     .+++++++||...+.++.|+.+++.+|++..+...
T Consensus       151 ~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~  201 (331)
T 2r44_A          151 FLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMN  201 (331)
T ss_dssp             CEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTT
T ss_pred             EEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccC
Confidence            66778888543     38999999998789999999999999999887653

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.58  E-value=9.2e-16  Score=153.29  Aligned_cols=159  Identities=14%  Similarity=0.100  Sum_probs=116.1

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-----cceeeee
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNI  280 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v  280 (496)
                      +..++++..|++++|++.+++.|.+.+...           .. .+++|+||||+|||++|+++++.+     +..++.+
T Consensus        11 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~   78 (323)
T 1sxj_B           11 WVEKYRPQVLSDIVGNKETIDRLQQIAKDG-----------NM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLEL   78 (323)
T ss_dssp             HHHHTCCSSGGGCCSCTHHHHHHHHHHHSC-----------CC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEE
T ss_pred             HHHhcCCCCHHHHHCCHHHHHHHHHHHHcC-----------CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEe
Confidence            455677888999999999999999887431           11 349999999999999999999986     4557777


Q ss_pred             ecccccccccCChHHHHHHHHHHhh-------hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCc
Q 010975          281 SASSVVSKWRGDSEKLIKVLFELAR-------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE  353 (496)
Q Consensus       281 ~~s~l~~~~~G~~e~~l~~lf~~a~-------~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~  353 (496)
                      ++++..      ....++.++....       ...+.||+|||+|.+...             ..+.|+..++.   ...
T Consensus        79 ~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-------------~~~~L~~~le~---~~~  136 (323)
T 1sxj_B           79 NASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-------------AQQALRRTMEL---YSN  136 (323)
T ss_dssp             CTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-------------HHHTTHHHHHH---TTT
T ss_pred             cCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH-------------HHHHHHHHHhc---cCC
Confidence            766532      1234444444333       223679999999987422             13445555552   223


Q ss_pred             EEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCC
Q 010975          354 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS  399 (496)
Q Consensus       354 ~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~  399 (496)
                      .+.+|.+||.+..+.+++++|+. .+.+++|+.++..++++..+..
T Consensus       137 ~~~~il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~  181 (323)
T 1sxj_B          137 STRFAFACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKL  181 (323)
T ss_dssp             TEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred             CceEEEEeCChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHH
Confidence            35566778888899999999996 5999999999999999987654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.58  E-value=4.3e-15  Score=151.52  Aligned_cols=168  Identities=20%  Similarity=0.233  Sum_probs=116.3

Q ss_pred             CCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh------cceeeeeecccc
Q 010975          212 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------KTTFFNISASSV  285 (496)
Q Consensus       212 ~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l------~~~~i~v~~s~l  285 (496)
                      ....++++|.++.++.|.+.+......        ..+.+++|+||||||||++++++++.+      +.+++.+++...
T Consensus        16 ~~~p~~~~gr~~e~~~l~~~l~~~~~~--------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~   87 (386)
T 2qby_A           16 DYIPDELPHREDQIRKIASILAPLYRE--------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI   87 (386)
T ss_dssp             SCCCSCCTTCHHHHHHHHHSSGGGGGT--------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred             ccCCCCCCChHHHHHHHHHHHHHHHcC--------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence            344578999999999999887543221        234689999999999999999999988      788999987543


Q ss_pred             ccc----------------ccCC-hHHHHHHHHHHhhhc-CCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC
Q 010975          286 VSK----------------WRGD-SEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG  347 (496)
Q Consensus       286 ~~~----------------~~G~-~e~~l~~lf~~a~~~-~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~  347 (496)
                      ...                ..+. .......++...... .|.||+|||+|.+.....         ..+...++..++.
T Consensus        88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~---------~~~l~~l~~~~~~  158 (386)
T 2qby_A           88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN---------DDILYKLSRINSE  158 (386)
T ss_dssp             CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC---------STHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc---------CHHHHHHhhchhh
Confidence            210                1121 223344444444433 378999999999964421         1233445555543


Q ss_pred             ccccCcEEEEEeccCCc---ccccHHHHHHhhh-hhcccCCCHHHHHHHHHhhCC
Q 010975          348 LTQSDELVFVLAATNLP---WELDAAMLRRLEK-RILVPLPDTEARRAMFESLLP  398 (496)
Q Consensus       348 ~~~~~~~viVIatTn~p---~~Ld~aL~rRf~~-~I~~~~P~~eeR~~Il~~~l~  398 (496)
                      .  ....+.+|++|+.+   ..+++.+.+||.. .+.+++++.++..++++..+.
T Consensus       159 ~--~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~  211 (386)
T 2qby_A          159 V--NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQ  211 (386)
T ss_dssp             C--CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred             c--CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence            3  23456777788876   4678899999853 799999999999999998664

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=99.57  E-value=4.8e-16  Score=157.66  Aligned_cols=163  Identities=22%  Similarity=0.259  Sum_probs=99.8

Q ss_pred             CCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceee----eeeccc
Q 010975          209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF----NISASS  284 (496)
Q Consensus       209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i----~v~~s~  284 (496)
                      ..++.+|++++|.+++++.+......+            ...++||+||||||||++|+++++.++....    .+++..
T Consensus        17 ~~~~~~f~~i~G~~~~~~~l~~~~~~~------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~   84 (350)
T 1g8p_A           17 TRPVFPFSAIVGQEDMKLALLLTAVDP------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN   84 (350)
T ss_dssp             -CCCCCGGGSCSCHHHHHHHHHHHHCG------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred             CCCCCCchhccChHHHHHHHHHHhhCC------------CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence            346678999999999887755443221            2257999999999999999999998863110    011111


Q ss_pred             ccc---------------------cccCChHHHH------HHHHHHhh---------hcCCcceehhhHHHHHhhhcCCc
Q 010975          285 VVS---------------------KWRGDSEKLI------KVLFELAR---------HHAPSTIFLDEIDAIISQRGEAR  328 (496)
Q Consensus       285 l~~---------------------~~~G~~e~~l------~~lf~~a~---------~~~p~ILfIDEID~L~~~r~~~~  328 (496)
                      ...                     ...+.....+      ...+....         ...++||||||+|.+...     
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~-----  159 (350)
T 1g8p_A           85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH-----  159 (350)
T ss_dssp             GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH-----
T ss_pred             cccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH-----
Confidence            100                     0011111111      11121110         112579999999987433     


Q ss_pred             chhHHhhhhhhhhhhhccC----------ccccCcEEEEEeccCCcc-cccHHHHHHhhhhhcccCC-CHHHHHHHHHhh
Q 010975          329 SEHEASRRLKTELLIQMDG----------LTQSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLP-DTEARRAMFESL  396 (496)
Q Consensus       329 ~~~~~~~~i~~~Ll~~ld~----------~~~~~~~viVIatTn~p~-~Ld~aL~rRf~~~I~~~~P-~~eeR~~Il~~~  396 (496)
                              .++.|+..++.          .......+++|+|||... .+++++++||+..+.++.| +.+++.+|++..
T Consensus       160 --------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~  231 (350)
T 1g8p_A          160 --------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRR  231 (350)
T ss_dssp             --------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHH
Confidence                    22334443331          011123578899999754 7999999999888999998 677777888764

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=99.56  E-value=9.3e-16  Score=150.38  Aligned_cols=201  Identities=22%  Similarity=0.194  Sum_probs=118.0

Q ss_pred             CccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc---ceeeeeecccccccc
Q 010975          213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSKW  289 (496)
Q Consensus       213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~s~l~~~~  289 (496)
                      .+|++++|.+..++.+.+.+.....          ...++||+||||||||++|+++++.+.   .+++.++|+.+....
T Consensus         3 ~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~   72 (265)
T 2bjv_A            3 EYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL   72 (265)
T ss_dssp             -------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred             cccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence            3588999999999988877654322          236899999999999999999999884   689999998763321


Q ss_pred             -----cCChH----HH---HHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------c
Q 010975          290 -----RGDSE----KL---IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------T  349 (496)
Q Consensus       290 -----~G~~e----~~---l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~  349 (496)
                           .|...    +.   ....+..+   .+++|||||+|.+...             .+..|+..++..        .
T Consensus        73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~  136 (265)
T 2bjv_A           73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPMM-------------VQEKLLRVIEYGELERVGGSQ  136 (265)
T ss_dssp             HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCHH-------------HHHHHHHHHHHCEECCCCC--
T ss_pred             HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCHH-------------HHHHHHHHHHhCCeecCCCcc
Confidence                 11100    00   01123333   2479999999987432             223344444321        1


Q ss_pred             ccCcEEEEEeccCCc-c------cccHHHHHHhhhhhcccCCCHHHH----HHHHHhhCCCCCCCCCCCcceeeecccCC
Q 010975          350 QSDELVFVLAATNLP-W------ELDAAMLRRLEKRILVPLPDTEAR----RAMFESLLPSQTGEESLPYDLLVERTEGY  418 (496)
Q Consensus       350 ~~~~~viVIatTn~p-~------~Ld~aL~rRf~~~I~~~~P~~eeR----~~Il~~~l~~~~~~~~~~l~~la~~t~g~  418 (496)
                      .....+.+|+|||.+ .      .+.++|.+||.. +.+..|+..+|    ..++++++.......+..      ....+
T Consensus       137 ~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~------~~~~~  209 (265)
T 2bjv_A          137 PLQVNVRLVCATNADLPAMVNEGTFRADLLDALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLP------LFPGF  209 (265)
T ss_dssp             CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCS------SCCCB
T ss_pred             cccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCC------cccCc
Confidence            112346688888875 2      367899999964 55556655544    445555443211110000      00235


Q ss_pred             cCCchhhcchhhhccHHHHHHHHhhccc
Q 010975          419 SGSDIRLVSKEAAMQPLRRLMVLLEGRQ  446 (496)
Q Consensus       419 s~~dI~~l~~~A~~~a~rR~~~~le~~~  446 (496)
                      +...+..+.+..|.+++|++.+.++...
T Consensus       210 ~~~a~~~L~~~~~~gn~reL~~~l~~~~  237 (265)
T 2bjv_A          210 TERARETLLNYRWPGNIRELKNVVERSV  237 (265)
T ss_dssp             CHHHHHHHHHSCCTTHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence            5666777777888888888777666543

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=99.56  E-value=2.2e-16  Score=159.09  Aligned_cols=214  Identities=19%  Similarity=0.253  Sum_probs=133.4

Q ss_pred             chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc----
Q 010975          216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----  288 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~----  288 (496)
                      ++++|.+...+.+.+.+....          ....+|||+||||||||++|+++++.+   +.+|+.++|+.+...    
T Consensus         2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~   71 (304)
T 1ojl_A            2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES   71 (304)
T ss_dssp             -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred             CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence            468899998888888775432          234689999999999999999999966   678999999876431    


Q ss_pred             -ccC----ChHH---HHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc--------ccC
Q 010975          289 -WRG----DSEK---LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSD  352 (496)
Q Consensus       289 -~~G----~~e~---~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~  352 (496)
                       ..|    ....   .....|..+.   .++|||||||.+...             .+..|+..++...        ...
T Consensus        72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~~~~  135 (304)
T 1ojl_A           72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISPL-------------MQVRLLRAIQEREVQRVGSNQTIS  135 (304)
T ss_dssp             HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCHH-------------HHHHHHHHHHSSBCCBTTBCCCCB
T ss_pred             HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCHH-------------HHHHHHHHHhcCEeeecCCccccc
Confidence             111    1111   1122344444   379999999987432             2233444444221        123


Q ss_pred             cEEEEEeccCCc-c------cccHHHHHHhhhhhcccCCCHHHHH----HHHHhhCCCCCCCCCCCcceeeecccCCcCC
Q 010975          353 ELVFVLAATNLP-W------ELDAAMLRRLEKRILVPLPDTEARR----AMFESLLPSQTGEESLPYDLLVERTEGYSGS  421 (496)
Q Consensus       353 ~~viVIatTn~p-~------~Ld~aL~rRf~~~I~~~~P~~eeR~----~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~  421 (496)
                      ..+.||++||.+ .      .+++.|..||.. +.+..|+..+|.    .++++++........       .....++..
T Consensus       136 ~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~-~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~-------~~~~~~s~~  207 (304)
T 1ojl_A          136 VDVRLIAATHRDLAEEVSAGRFRQDLYYRLNV-VAIEMPSLRQRREDIPLLADHFLRRFAERNR-------KVVKGFTPQ  207 (304)
T ss_dssp             CCCEEEEEESSCHHHHHHHTSSCHHHHHHHSS-EEEECCCSGGGGGGHHHHHHHHHHHHHHHTT-------CCCCCBCHH
T ss_pred             CCeEEEEecCccHHHHHHhCCcHHHHHhhcCe-eEEeccCHHHhHhhHHHHHHHHHHHHHHHhc-------cCccCCCHH
Confidence            346788888876 1      256788999963 666666655554    456555532211100       112246667


Q ss_pred             chhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHh
Q 010975          422 DIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL  469 (496)
Q Consensus       422 dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al  469 (496)
                      .+..+.+..|.+++|++.+.++........      ..|+.+|+...+
T Consensus       208 a~~~L~~~~wpGnvReL~~~l~~~~~~~~~------~~i~~~~l~~~~  249 (304)
T 1ojl_A          208 AMDLLIHYDWPGNIRELENAIERAVVLLTG------EYISERELPLAI  249 (304)
T ss_dssp             HHHHHHHCCCSSHHHHHHHHHHHHHHHCCS------SSBCGGGSCGGG
T ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHHhCCC------CcccHHhhhhhh
Confidence            778888888999999888877765443322      125666664433

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.54  E-value=1.6e-15  Score=170.44  Aligned_cols=202  Identities=17%  Similarity=0.198  Sum_probs=132.3

Q ss_pred             chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCC
Q 010975          216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD  292 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~  292 (496)
                      ++++|++.+++.+.+.+.......   .....+..++||+||||||||++|+++|+.+   +.+++.++++++...+...
T Consensus       491 ~~viGq~~a~~~l~~~i~~~~~~~---~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~  567 (758)
T 3pxi_A          491 SRVIGQDEAVVAVAKAVRRARAGL---KDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS  567 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTTTC---SCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred             CcCcChHHHHHHHHHHHHHHHccc---CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence            468999999999988886432111   0011233479999999999999999999998   6789999999998776554


Q ss_pred             hHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc--------ccCcEEEEEeccCCc
Q 010975          293 SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLP  364 (496)
Q Consensus       293 ~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~viVIatTn~p  364 (496)
                       ..   .+....+...++||||||||.+.             ..+++.|+..++.-.        ....+++||+|||.+
T Consensus       568 -~~---~l~~~~~~~~~~vl~lDEi~~~~-------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~  630 (758)
T 3pxi_A          568 -GG---QLTEKVRRKPYSVVLLDAIEKAH-------------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG  630 (758)
T ss_dssp             -------CHHHHHHCSSSEEEEECGGGSC-------------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred             -cc---hhhHHHHhCCCeEEEEeCccccC-------------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence             12   22333444556899999998763             234455666665321        123346788999965


Q ss_pred             cc------------ccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC-------CCC---CCCcceeeec--ccCCcC
Q 010975          365 WE------------LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT-------GEE---SLPYDLLVER--TEGYSG  420 (496)
Q Consensus       365 ~~------------Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~-------~~~---~~~l~~la~~--t~g~s~  420 (496)
                      ..            +.+++++||+.++.|++|+.+++..|++.++....       ...   +..++.+++.  ...+..
T Consensus       631 ~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~  710 (758)
T 3pxi_A          631 ASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGA  710 (758)
T ss_dssp             TTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTT
T ss_pred             hhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCC
Confidence            32            78899999988999999999999999988774421       110   0112223332  223345


Q ss_pred             CchhhcchhhhccHHHH
Q 010975          421 SDIRLVSKEAAMQPLRR  437 (496)
Q Consensus       421 ~dI~~l~~~A~~~a~rR  437 (496)
                      ++++.+++++....+.+
T Consensus       711 R~L~~~i~~~v~~~l~~  727 (758)
T 3pxi_A          711 RPLRRAIQKHVEDRLSE  727 (758)
T ss_dssp             TTHHHHHHHHTHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            66666666666655554

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=99.54  E-value=2.3e-15  Score=152.39  Aligned_cols=159  Identities=10%  Similarity=0.066  Sum_probs=116.7

Q ss_pred             hhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----------cceeeeeecccccc
Q 010975          218 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISASSVVS  287 (496)
Q Consensus       218 liG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----------~~~~i~v~~s~l~~  287 (496)
                      |.|.++..+.|...+...+..        ..+.+++|+||||||||++++++++++          +..+++++|..+.+
T Consensus        22 L~~Re~E~~~i~~~L~~~i~~--------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t   93 (318)
T 3te6_A           22 LKSQVEDFTRIFLPIYDSLMS--------SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG   93 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT--------TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred             cCCHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence            889999999988877554432        245789999999999999999999998          35788999866543


Q ss_pred             c----------c------cCChHHHHHHHHHHh--hhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc
Q 010975          288 K----------W------RGDSEKLIKVLFELA--RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT  349 (496)
Q Consensus       288 ~----------~------~G~~e~~l~~lf~~a--~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~  349 (496)
                      .          .      .+.....+..+|...  ....+.|++|||+|.+. .           +.++..|+.+..   
T Consensus        94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~-----------q~~L~~l~~~~~---  158 (318)
T 3te6_A           94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S-----------EKILQYFEKWIS---  158 (318)
T ss_dssp             -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C-----------THHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c-----------chHHHHHHhccc---
Confidence            2          1      234566778888875  34556899999999985 1           223333433322   


Q ss_pred             ccCcEEEEEeccCCccc----ccHHHHHHhh-hhhcccCCCHHHHHHHHHhhCCC
Q 010975          350 QSDELVFVLAATNLPWE----LDAAMLRRLE-KRILVPLPDTEARRAMFESLLPS  399 (496)
Q Consensus       350 ~~~~~viVIatTn~p~~----Ld~aL~rRf~-~~I~~~~P~~eeR~~Il~~~l~~  399 (496)
                      ....+++||+++|..+.    +++++++||. .++.|++|+.++..+|++..+..
T Consensus       159 ~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~  213 (318)
T 3te6_A          159 SKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS  213 (318)
T ss_dssp             CSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             ccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence            23456788888888753    5667788996 57999999999999999998865

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=99.54  E-value=4e-15  Score=151.98  Aligned_cols=161  Identities=21%  Similarity=0.257  Sum_probs=113.9

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------  276 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~---------  276 (496)
                      +.+++.+..|++++|++++++.|...+...           ..++.+||+||||||||++|+++++.++..         
T Consensus         6 l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~-----------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~   74 (373)
T 1jr3_A            6 LARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG   74 (373)
T ss_dssp             HHHHTCCCSTTTSCSCHHHHHHHHHHHHHT-----------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCS
T ss_pred             HHHhhCCCchhhccCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCc
Confidence            455677888999999999999999887432           123468999999999999999999988542         


Q ss_pred             ---------------eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975          277 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL  337 (496)
Q Consensus       277 ---------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i  337 (496)
                                     ++.++...      ......++.+++.+..    ..+.||+|||+|.+..             ..
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~-------------~~  135 (373)
T 1jr3_A           75 VCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-------------HS  135 (373)
T ss_dssp             SSHHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH-------------HH
T ss_pred             ccHHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH-------------HH
Confidence                           12222111      0111234555555542    3457999999988732             12


Q ss_pred             hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCC
Q 010975          338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ  400 (496)
Q Consensus       338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~  400 (496)
                      .+.|+..++.   ....+++|++|+.+..+.+++++|+ ..+.++.|+.++...+++.++...
T Consensus       136 ~~~Ll~~le~---~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~  194 (373)
T 1jr3_A          136 FNALLKTLEE---PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEE  194 (373)
T ss_dssp             HHHHHHHHHS---CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhc---CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHc
Confidence            3456666653   2334667777888888999999998 459999999999999999887544

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.52  E-value=1.3e-14  Score=148.72  Aligned_cols=165  Identities=14%  Similarity=0.084  Sum_probs=112.9

Q ss_pred             ccchhhcchHHHHHHhhhhcccccCccccccccCccc--eeeeeCCCCChhHHHHHHHHhhh----cceeeeeecccccc
Q 010975          214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWK--GILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVS  287 (496)
Q Consensus       214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~--~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~s~l~~  287 (496)
                      ..++++|.++.++.|.+.+......        ..+.  +++|+||||||||++++++++.+    +.+++.+++.....
T Consensus        15 ~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~   86 (389)
T 1fnn_A           15 VPKRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN   86 (389)
T ss_dssp             CCSCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred             CCCCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence            3478999999999999887543221        1223  79999999999999999999988    57888888765432


Q ss_pred             c----------------ccCC-hHHHHHHHHHHhhh-cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc
Q 010975          288 K----------------WRGD-SEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT  349 (496)
Q Consensus       288 ~----------------~~G~-~e~~l~~lf~~a~~-~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~  349 (496)
                      .                ..+. .......+...... ..|.||+|||+|.+.             ......|+..++...
T Consensus        87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-------------~~~~~~L~~~~~~~~  153 (389)
T 1fnn_A           87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-------------PDILSTFIRLGQEAD  153 (389)
T ss_dssp             HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-------------HHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-------------hHHHHHHHHHHHhCC
Confidence            1                0111 12222233222222 347799999998871             223345555554332


Q ss_pred             cc-CcEEEEEeccCCc---ccccHHHHHHhhh-hhcccCCCHHHHHHHHHhhCCC
Q 010975          350 QS-DELVFVLAATNLP---WELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPS  399 (496)
Q Consensus       350 ~~-~~~viVIatTn~p---~~Ld~aL~rRf~~-~I~~~~P~~eeR~~Il~~~l~~  399 (496)
                      .. ...+.||++||.+   ..+++.+.+||.. .+.+++++.++..++++..+..
T Consensus       154 ~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~  208 (389)
T 1fnn_A          154 KLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKA  208 (389)
T ss_dssp             HHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHH
T ss_pred             CCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHh
Confidence            10 1356777888887   5688999999975 7999999999999999887653

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.52  E-value=8.3e-15  Score=149.16  Aligned_cols=221  Identities=17%  Similarity=0.158  Sum_probs=135.4

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV  285 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l  285 (496)
                      +.+...+.+|++++|.+.+++.+...+......       ..++.+++|+||||+||||+++++|+.++.++...++..+
T Consensus        15 ~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~-------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~   87 (334)
T 1in4_A           15 GVQFLRPKSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL   87 (334)
T ss_dssp             --CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTC
T ss_pred             HHHHcCCccHHHccCcHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHh
Confidence            445556678999999999999888766432111       1233679999999999999999999999988776655433


Q ss_pred             cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc---------------c
Q 010975          286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------Q  350 (496)
Q Consensus       286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~---------------~  350 (496)
                      .      ....+..++...  ..+.|+||||++.+....             .+.++..++...               .
T Consensus        88 ~------~~~~l~~~~~~~--~~~~v~~iDE~~~l~~~~-------------~e~L~~~~~~~~~~i~~~~~~~~~~i~~  146 (334)
T 1in4_A           88 V------KQGDMAAILTSL--ERGDVLFIDEIHRLNKAV-------------EELLYSAIEDFQIDIMIGKGPSAKSIRI  146 (334)
T ss_dssp             C------SHHHHHHHHHHC--CTTCEEEEETGGGCCHHH-------------HHHHHHHHHTSCCCC-------------
T ss_pred             c------CHHHHHHHHHHc--cCCCEEEEcchhhcCHHH-------------HHHHHHHHHhcccceeeccCcccccccc
Confidence            2      122233333322  234799999999874321             111221111100               0


Q ss_pred             cCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCC-CCcceeeecccCCcCCchhhcchh
Q 010975          351 SDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKE  429 (496)
Q Consensus       351 ~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~-~~l~~la~~t~g~s~~dI~~l~~~  429 (496)
                      ....+.++++|+.+..+++++++||...+.+++|+.+++.++++..........+ .....+++.+.|.. +++..+++.
T Consensus       147 ~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~-R~a~~ll~~  225 (334)
T 1in4_A          147 DIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTP-RIAIRLTKR  225 (334)
T ss_dssp             --CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCH-HHHHHHHHH
T ss_pred             cCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCCh-HHHHHHHHH
Confidence            1123456678899999999999999877899999999999999988754333221 12344555555432 333333333


Q ss_pred             hhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCC
Q 010975          430 AAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR  473 (496)
Q Consensus       430 A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~  473 (496)
                      +...+..      ++            ...||.+++.+++....
T Consensus       226 ~~~~a~~------~~------------~~~It~~~v~~al~~~~  251 (334)
T 1in4_A          226 VRDMLTV------VK------------ADRINTDIVLKTMEVLN  251 (334)
T ss_dssp             HHHHHHH------HT------------CSSBCHHHHHHHHHHHT
T ss_pred             HHHHHHH------cC------------CCCcCHHHHHHHHHHhC
Confidence            3221111      10            12377788888777654

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.52  E-value=1.5e-14  Score=147.23  Aligned_cols=217  Identities=19%  Similarity=0.211  Sum_probs=139.1

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc-----ceeee
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFN  279 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~-----~~~i~  279 (496)
                      .|.+++++.+|++++|++++++.|...+...           .. .+++|+||||||||++|+++|+.+.     ..+..
T Consensus        14 ~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g-----------~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~   81 (340)
T 1sxj_C           14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEG-----------KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE   81 (340)
T ss_dssp             CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTT-----------CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred             chHHHhCCCcHHHhcCcHHHHHHHHHHHhcC-----------CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence            4677788889999999999999998877431           11 3599999999999999999999873     34566


Q ss_pred             eecccccccccCChHHHHHHHHHHhhh------cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCc
Q 010975          280 ISASSVVSKWRGDSEKLIKVLFELARH------HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE  353 (496)
Q Consensus       280 v~~s~l~~~~~G~~e~~l~~lf~~a~~------~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~  353 (496)
                      +++++..    +  ...++..+.....      ..+.|++|||+|.+...             ..+.|+..++..   ..
T Consensus        82 ~~~~~~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~-------------~~~~L~~~le~~---~~  139 (340)
T 1sxj_C           82 LNASDDR----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-------------AQNALRRVIERY---TK  139 (340)
T ss_dssp             ECTTSCC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH-------------HHHHHHHHHHHT---TT
T ss_pred             EcCcccc----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH-------------HHHHHHHHHhcC---CC
Confidence            6655421    1  2233333322221      23579999999987322             234566666532   22


Q ss_pred             EEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhcc
Q 010975          354 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQ  433 (496)
Q Consensus       354 ~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~  433 (496)
                      .+.+|.+||.+..+.+++++|+. .+.++.++.++..+++...+......              ++...+ ..+.+.+.+
T Consensus       140 ~~~~il~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~~~~~--------------i~~~~~-~~i~~~s~G  203 (340)
T 1sxj_C          140 NTRFCVLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHEKLK--------------LSPNAE-KALIELSNG  203 (340)
T ss_dssp             TEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTTTCC--------------BCHHHH-HHHHHHHTT
T ss_pred             CeEEEEEecCccccchhHHhhce-eEeccCCCHHHHHHHHHHHHHHcCCC--------------CCHHHH-HHHHHHcCC
Confidence            34456678999999999999997 48899999999998888877443221              111122 222334455


Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCC
Q 010975          434 PLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP  474 (496)
Q Consensus       434 a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~P  474 (496)
                      .+|++++.++........   .....||.+++..++....+
T Consensus       204 ~~r~~~~~l~~~~~~~~~---~~~~~it~~~v~~~~~~~~~  241 (340)
T 1sxj_C          204 DMRRVLNVLQSCKATLDN---PDEDEISDDVIYECCGAPRP  241 (340)
T ss_dssp             CHHHHHHHTTTTTTTTCS---SSCCCBCHHHHHHHTTCCCH
T ss_pred             CHHHHHHHHHHHHHhcCC---cccccccHHHHHHHhCCCCH
Confidence            666666666533221111   01124888888887776544

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.51  E-value=5.1e-15  Score=150.62  Aligned_cols=163  Identities=15%  Similarity=0.203  Sum_probs=109.7

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhh-cccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc--------
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAV-VMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--------  275 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l-~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~--------  275 (496)
                      .|.+++++.+|++++|++++++.+...+ ...           .. .+++|+||||+||||+++++++++..        
T Consensus         3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~-----------~~-~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~   70 (354)
T 1sxj_E            3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPR-----------DL-PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKI   70 (354)
T ss_dssp             -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTT-----------CC-CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---
T ss_pred             cchhccCCCCHHHhcCCHHHHHHHHHHHhhCC-----------CC-CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEe
Confidence            4678889999999999999999998877 321           11 24999999999999999999996511        


Q ss_pred             ---------------------eeeeeecccccccccCChHHHHHHHHHHhh--------------hcCCcceehhhHHHH
Q 010975          276 ---------------------TFFNISASSVVSKWRGDSEKLIKVLFELAR--------------HHAPSTIFLDEIDAI  320 (496)
Q Consensus       276 ---------------------~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~--------------~~~p~ILfIDEID~L  320 (496)
                                           .++.++.++..    ......++..++.+.              ...|.||+|||++.+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L  146 (354)
T 1sxj_E           71 DVRQFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL  146 (354)
T ss_dssp             ---------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS
T ss_pred             cceeecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc
Confidence                                 11222221110    001112444444332              125679999999875


Q ss_pred             HhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCC
Q 010975          321 ISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ  400 (496)
Q Consensus       321 ~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~  400 (496)
                      ..             ...+.|+..++...   ..+.+|.+|+.+..+.+++++|+ ..+.+++|+.++...+++..+...
T Consensus       147 ~~-------------~~~~~L~~~le~~~---~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~  209 (354)
T 1sxj_E          147 TK-------------DAQAALRRTMEKYS---KNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNE  209 (354)
T ss_dssp             CH-------------HHHHHHHHHHHHST---TTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred             CH-------------HHHHHHHHHHHhhc---CCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHc
Confidence            21             12344555555322   23556778888888999999999 559999999999999999887543

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.51  E-value=6.9e-15  Score=165.25  Aligned_cols=203  Identities=19%  Similarity=0.233  Sum_probs=133.3

Q ss_pred             hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc--------
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK--------  288 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~--------  288 (496)
                      +++|++++++.+...+......   ......+..++||+||||||||++|+++|+.++.+++.++++++...        
T Consensus       459 ~v~g~~~~~~~l~~~i~~~~~g---~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g  535 (758)
T 1r6b_X          459 LVFGQDKAIEALTEAIKMARAG---LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG  535 (758)
T ss_dssp             TSCSCHHHHHHHHHHHHHHHTT---CSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCC
T ss_pred             hccCHHHHHHHHHHHHHHHhcc---cCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcC
Confidence            4788888888887766432110   00001233579999999999999999999999999999999887543        


Q ss_pred             ----ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccc--------cCcEEE
Q 010975          289 ----WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------SDELVF  356 (496)
Q Consensus       289 ----~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~--------~~~~vi  356 (496)
                          |+|..+.  ..+....+...++||||||||.+.             ..+++.|+..++.-..        ...+++
T Consensus       536 ~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~-------------~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~  600 (758)
T 1r6b_X          536 APPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH-------------PDVFNILLQVMDNGTLTDNNGRKADFRNVV  600 (758)
T ss_dssp             CCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSC-------------HHHHHHHHHHHHHSEEEETTTEEEECTTEE
T ss_pred             CCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccC-------------HHHHHHHHHHhcCcEEEcCCCCEEecCCeE
Confidence                2221111  123334444556899999998763             2345667776663211        113477


Q ss_pred             EEeccCCcc-------------------------cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC-------C-
Q 010975          357 VLAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG-------E-  403 (496)
Q Consensus       357 VIatTn~p~-------------------------~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~-------~-  403 (496)
                      ||+|||.+.                         .+++++++||+.++.|++|+.+++..|++.++.....       . 
T Consensus       601 iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~  680 (758)
T 1r6b_X          601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSL  680 (758)
T ss_dssp             EEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred             EEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEE
Confidence            899999743                         5788999999888999999999999999988753210       0 


Q ss_pred             --CCCCcceeeec--ccCCcCCchhhcchhhhccHHHH
Q 010975          404 --ESLPYDLLVER--TEGYSGSDIRLVSKEAAMQPLRR  437 (496)
Q Consensus       404 --~~~~l~~la~~--t~g~s~~dI~~l~~~A~~~a~rR  437 (496)
                        .+..++.+++.  ...+..+.+..+++.+....+.+
T Consensus       681 ~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~  718 (758)
T 1r6b_X          681 EVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLAN  718 (758)
T ss_dssp             EECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHH
T ss_pred             EeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHH
Confidence              01112223332  22344677777777776665554

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=99.48  E-value=2e-14  Score=128.70  Aligned_cols=132  Identities=11%  Similarity=0.122  Sum_probs=90.3

Q ss_pred             hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCCh
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS  293 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~~  293 (496)
                      +++|.+...+++.+.+....          ....+|||+||||||||++|+++++..   +.+|+ ++++.+...     
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~-----   65 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA-----   65 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred             CceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence            57898888888888775432          223679999999999999999999987   77899 999877554     


Q ss_pred             HHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc-------c
Q 010975          294 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW-------E  366 (496)
Q Consensus       294 e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~-------~  366 (496)
                       ......+..+..   ++|||||+|.+...             .+..|+..+..   ....+.+|+|||.+.       .
T Consensus        66 -~~~~~~~~~a~~---g~l~ldei~~l~~~-------------~q~~Ll~~l~~---~~~~~~~I~~t~~~~~~~~~~~~  125 (145)
T 3n70_A           66 -PQLNDFIALAQG---GTLVLSHPEHLTRE-------------QQYHLVQLQSQ---EHRPFRLIGIGDTSLVELAASNH  125 (145)
T ss_dssp             -SCHHHHHHHHTT---SCEEEECGGGSCHH-------------HHHHHHHHHHS---SSCSSCEEEEESSCHHHHHHHSC
T ss_pred             -hhhhcHHHHcCC---cEEEEcChHHCCHH-------------HHHHHHHHHhh---cCCCEEEEEECCcCHHHHHHcCC
Confidence             223445555543   89999999987432             23345555532   223355777888652       3


Q ss_pred             ccHHHHHHhhhhhcccCCC
Q 010975          367 LDAAMLRRLEKRILVPLPD  385 (496)
Q Consensus       367 Ld~aL~rRf~~~I~~~~P~  385 (496)
                      +.+.+..|+.. +.+..|.
T Consensus       126 ~~~~L~~rl~~-~~i~lPp  143 (145)
T 3n70_A          126 IIAELYYCFAM-TQIACLP  143 (145)
T ss_dssp             CCHHHHHHHHH-HEEECCC
T ss_pred             CCHHHHHHhcC-CEEeCCC
Confidence            66788888864 5555554

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=99.48  E-value=1.6e-14  Score=154.79  Aligned_cols=155  Identities=21%  Similarity=0.230  Sum_probs=96.8

Q ss_pred             chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc--eeeeeec-----cccccc
Q 010975          216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISA-----SSVVSK  288 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~--~~i~v~~-----s~l~~~  288 (496)
                      ..++|.+++++.+...+..              ..++||+||||||||++|+++|+.++.  ++..+++     +++.+.
T Consensus        22 ~~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~   87 (500)
T 3nbx_X           22 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP   87 (500)
T ss_dssp             TTCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred             hhhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence            4589999999988776632              258999999999999999999998843  4444443     233332


Q ss_pred             ccCChHHHHHHHHHHhhhc---CCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc-------CccccCcEEEEE
Q 010975          289 WRGDSEKLIKVLFELARHH---APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD-------GLTQSDELVFVL  358 (496)
Q Consensus       289 ~~G~~e~~l~~lf~~a~~~---~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld-------~~~~~~~~viVI  358 (496)
                      +.+..... ...+..+...   .++|||||||+.+.+             .+.+.|+..|+       +........++|
T Consensus        88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~-------------~~q~~LL~~lee~~v~i~G~~~~~~~~~iI  153 (500)
T 3nbx_X           88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAGP-------------AILNTLLTAINERQFRNGAHVEKIPMRLLV  153 (500)
T ss_dssp             BC-----------CBCCTTSGGGCSEEEEESGGGCCH-------------HHHHHHHHHHHSSEEECSSSEEECCCCEEE
T ss_pred             ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhcH-------------HHHHHHHHHHHHHhccCCCCcCCcchhhhh
Confidence            22221111 1222222221   457999999976432             23344555553       222222222456


Q ss_pred             eccCCccc---ccHHHHHHhhhhhcccCCCH-HHHHHHHHhhCC
Q 010975          359 AATNLPWE---LDAAMLRRLEKRILVPLPDT-EARRAMFESLLP  398 (496)
Q Consensus       359 atTn~p~~---Ld~aL~rRf~~~I~~~~P~~-eeR~~Il~~~l~  398 (496)
                      +|||.+..   ..+++++||...+.+++|+. +++..|++....
T Consensus       154 ~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~  197 (500)
T 3nbx_X          154 AASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQD  197 (500)
T ss_dssp             EEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred             hccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccc
Confidence            67775422   45799999988899999987 778899987654

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=99.46  E-value=6.5e-15  Score=161.27  Aligned_cols=167  Identities=21%  Similarity=0.233  Sum_probs=104.5

Q ss_pred             chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeee----eccccccccc-
Q 010975          216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI----SASSVVSKWR-  290 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v----~~s~l~~~~~-  290 (496)
                      ..++|++++|+.+...+....... ..........++||+||||||||++|+++|+.++..++..    ++.++.+... 
T Consensus       295 ~~I~G~e~vk~al~~~l~~g~~~~-~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~  373 (595)
T 3f9v_A          295 PSIYGHWELKEALALALFGGVPKV-LEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR  373 (595)
T ss_dssp             STTSCCHHHHHHHTTTTTCCCCEE-TTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred             chhcChHHHHHHHHHHHhCCCccc-ccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence            369999999998876554321100 0001123334899999999999999999999998776553    2333333221 


Q ss_pred             ----CChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc----------ccCcEEE
Q 010975          291 ----GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVF  356 (496)
Q Consensus       291 ----G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~vi  356 (496)
                          |..... ...+..+.   .+|+||||||.+...             ..+.|+..|+.-.          ..+.++.
T Consensus       374 ~~~~g~~~~~-~G~l~~A~---~gil~IDEid~l~~~-------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~  436 (595)
T 3f9v_A          374 EKGTGEYYLE-AGALVLAD---GGIAVIDEIDKMRDE-------------DRVAIHEAMEQQTVSIAKAGIVAKLNARAA  436 (595)
T ss_dssp             GGGTSSCSEE-ECHHHHHS---SSEECCTTTTCCCSH-------------HHHHHHHHHHSSSEEEESSSSEEEECCCCE
T ss_pred             cccccccccc-CCeeEecC---CCcEEeehhhhCCHh-------------HhhhhHHHHhCCEEEEecCCcEEEecCceE
Confidence                111000 01222332   379999999987332             2344555554221          1234577


Q ss_pred             EEeccCCcc-------------cccHHHHHHhhh-hhcccCCCHHHHHHHHHhhCCCCC
Q 010975          357 VLAATNLPW-------------ELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       357 VIatTn~p~-------------~Ld~aL~rRf~~-~I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                      ||+|||.++             .+++++++||+. .+..+.|+.+ ...|+++.+....
T Consensus       437 vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~  494 (595)
T 3f9v_A          437 VIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHS  494 (595)
T ss_dssp             EEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTC
T ss_pred             EEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhh
Confidence            999999886             799999999974 4455667777 8888888776543

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.45  E-value=3.2e-14  Score=162.05  Aligned_cols=207  Identities=23%  Similarity=0.284  Sum_probs=134.5

Q ss_pred             cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc---
Q 010975          215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---  288 (496)
Q Consensus       215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~---  288 (496)
                      +++++|++.+++.+...+.......   .....+..++||+||||||||++|+++|+.+   +.+++.++|+++...   
T Consensus       557 ~~~viG~~~a~~~l~~~i~~~~~g~---~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~  633 (854)
T 1qvr_A          557 HKRVVGQDEAIRAVADAIRRARAGL---KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV  633 (854)
T ss_dssp             HHHSCSCHHHHHHHHHHHHHHGGGC---SCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred             hcccCCcHHHHHHHHHHHHHHhccc---CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence            3578999999999988875432100   0001233579999999999999999999999   789999999876543   


Q ss_pred             ---------ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc--------cc
Q 010975          289 ---------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QS  351 (496)
Q Consensus       289 ---------~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~  351 (496)
                               |+|..+  ...+....+...++||||||+|.+.             ..+++.|+..++.-.        ..
T Consensus       634 s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~-------------~~~~~~Ll~~l~~~~~~~~~g~~vd  698 (854)
T 1qvr_A          634 SRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH-------------PDVFNILLQILDDGRLTDSHGRTVD  698 (854)
T ss_dssp             GGC----------------CHHHHHHHCSSEEEEESSGGGSC-------------HHHHHHHHHHHTTTEECCSSSCCEE
T ss_pred             HHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC-------------HHHHHHHHHHhccCceECCCCCEec
Confidence                     222221  1223333444456899999998763             235566777776331        11


Q ss_pred             CcEEEEEeccCCc--------------------------ccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC---
Q 010975          352 DELVFVLAATNLP--------------------------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG---  402 (496)
Q Consensus       352 ~~~viVIatTn~p--------------------------~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~---  402 (496)
                      -.+++||+|||..                          ..+.++|++||+.++.+.+|+.++...|++.++.....   
T Consensus       699 ~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~  778 (854)
T 1qvr_A          699 FRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLA  778 (854)
T ss_dssp             CTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            2357789999972                          12567888999888999999999999999888753211   


Q ss_pred             ----C---CCCCcceeeeccc--CCcCCchhhcchhhhccHHHHHH
Q 010975          403 ----E---ESLPYDLLVERTE--GYSGSDIRLVSKEAAMQPLRRLM  439 (496)
Q Consensus       403 ----~---~~~~l~~la~~t~--g~s~~dI~~l~~~A~~~a~rR~~  439 (496)
                          .   .+..++.++...-  .+..++++.+++.+...++.+.+
T Consensus       779 ~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i  824 (854)
T 1qvr_A          779 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI  824 (854)
T ss_dssp             TTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHH
T ss_pred             hCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence                0   0111223444332  45567777777777777666543

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=99.44  E-value=8.4e-15  Score=130.91  Aligned_cols=132  Identities=12%  Similarity=0.140  Sum_probs=88.3

Q ss_pred             hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHH
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKL  296 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~  296 (496)
                      +++|.+..++++.+.+....          ....+|+|+||||||||++|+++++..+ +++.++++++...+       
T Consensus         5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------   66 (143)
T 3co5_A            5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------   66 (143)
T ss_dssp             ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred             CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence            58899999998888875432          2236799999999999999999999988 99999998875433       


Q ss_pred             HHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc-cc----ccHHH
Q 010975          297 IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE----LDAAM  371 (496)
Q Consensus       297 l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p-~~----Ld~aL  371 (496)
                      ...+++.+.   +++|||||+|.+...             .+..|+..++...  ...+.+|+|||.+ ..    +++.+
T Consensus        67 ~~~~~~~a~---~~~l~lDei~~l~~~-------------~q~~Ll~~l~~~~--~~~~~iI~~tn~~~~~~~~~~~~~L  128 (143)
T 3co5_A           67 PMELLQKAE---GGVLYVGDIAQYSRN-------------IQTGITFIIGKAE--RCRVRVIASCSYAAGSDGISCEEKL  128 (143)
T ss_dssp             HHHHHHHTT---TSEEEEEECTTCCHH-------------HHHHHHHHHHHHT--TTTCEEEEEEEECTTTC--CHHHHH
T ss_pred             hhhHHHhCC---CCeEEEeChHHCCHH-------------HHHHHHHHHHhCC--CCCEEEEEecCCCHHHHHhCccHHH
Confidence            455566555   379999999987432             2233455554221  2235577777755 33    55666


Q ss_pred             HHHhhhhhcccCCC
Q 010975          372 LRRLEKRILVPLPD  385 (496)
Q Consensus       372 ~rRf~~~I~~~~P~  385 (496)
                      ..|+.. +.+..|.
T Consensus       129 ~~rl~~-~~i~lPp  141 (143)
T 3co5_A          129 AGLFSE-SVVRIPP  141 (143)
T ss_dssp             HHHSSS-EEEEECC
T ss_pred             HHHhcC-cEEeCCC
Confidence            667644 3444443

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=99.26  E-value=2.5e-12  Score=130.82  Aligned_cols=146  Identities=12%  Similarity=0.140  Sum_probs=100.7

Q ss_pred             chHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce------------------------
Q 010975          221 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------------------  276 (496)
Q Consensus       221 ~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~------------------------  276 (496)
                      ++++.+.+...+...           ..++.+||+||||+|||++|+++|+.+...                        
T Consensus         7 ~~~~~~~l~~~i~~~-----------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d   75 (334)
T 1a5t_A            7 LRPDFEKLVASYQAG-----------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD   75 (334)
T ss_dssp             GHHHHHHHHHHHHTT-----------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT
T ss_pred             hHHHHHHHHHHHHcC-----------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence            455666666655321           123569999999999999999999988532                        


Q ss_pred             eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccC
Q 010975          277 FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD  352 (496)
Q Consensus       277 ~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~  352 (496)
                      ++.++..+-   ........++.+++.+..    ..+.|++|||+|.+...             ..+.|+..++.   .+
T Consensus        76 ~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~-------------a~naLLk~lEe---p~  136 (334)
T 1a5t_A           76 YYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDA-------------AANALLKTLEE---PP  136 (334)
T ss_dssp             EEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHH-------------HHHHHHHHHTS---CC
T ss_pred             EEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHH-------------HHHHHHHHhcC---CC
Confidence            222222100   011123456677776653    23579999999987322             23567777763   33


Q ss_pred             cEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhC
Q 010975          353 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL  397 (496)
Q Consensus       353 ~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l  397 (496)
                      ..+++|.+|+.++.+.+++++|+.. +.++.|+.++...+++...
T Consensus       137 ~~~~~Il~t~~~~~l~~ti~SRc~~-~~~~~~~~~~~~~~L~~~~  180 (334)
T 1a5t_A          137 AETWFFLATREPERLLATLRSRCRL-HYLAPPPEQYAVTWLSREV  180 (334)
T ss_dssp             TTEEEEEEESCGGGSCHHHHTTSEE-EECCCCCHHHHHHHHHHHC
T ss_pred             CCeEEEEEeCChHhCcHHHhhccee-eeCCCCCHHHHHHHHHHhc
Confidence            4466777788899999999999965 9999999999999998876

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=99.22  E-value=1.2e-11  Score=124.51  Aligned_cols=142  Identities=11%  Similarity=0.098  Sum_probs=101.2

Q ss_pred             cchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh------cceeeeeecccccccccCCh
Q 010975          220 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------KTTFFNISASSVVSKWRGDS  293 (496)
Q Consensus       220 G~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l------~~~~i~v~~s~l~~~~~G~~  293 (496)
                      |++++.+.|...+....            ..++||+||||+|||++|+++|+.+      ...++.+++++-     ...
T Consensus         1 g~~~~~~~L~~~i~~~~------------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~   63 (305)
T 2gno_A            1 GAKDQLETLKRIIEKSE------------GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIG   63 (305)
T ss_dssp             ---CHHHHHHHHHHTCS------------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBC
T ss_pred             ChHHHHHHHHHHHHCCC------------CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCC
Confidence            67778888888774421            2589999999999999999999864      235566654320     112


Q ss_pred             HHHHHHHHHHhhhcC----CcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccH
Q 010975          294 EKLIKVLFELARHHA----PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA  369 (496)
Q Consensus       294 e~~l~~lf~~a~~~~----p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~  369 (496)
                      -..++.+++.+....    ..|++|||+|.+..             ...+.|+..++.   .+..+++|.+|+.+..+.+
T Consensus        64 id~ir~li~~~~~~p~~~~~kvviIdead~lt~-------------~a~naLLk~LEe---p~~~t~fIl~t~~~~kl~~  127 (305)
T 2gno_A           64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ-------------QAANAFLKALEE---PPEYAVIVLNTRRWHYLLP  127 (305)
T ss_dssp             HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-------------HHHHHTHHHHHS---CCTTEEEEEEESCGGGSCH
T ss_pred             HHHHHHHHHHHhhccccCCceEEEeccHHHhCH-------------HHHHHHHHHHhC---CCCCeEEEEEECChHhChH
Confidence            345677777765432    35999999998732             234678888873   3334556667788889999


Q ss_pred             HHHHHhhhhhcccCCCHHHHHHHHHhhC
Q 010975          370 AMLRRLEKRILVPLPDTEARRAMFESLL  397 (496)
Q Consensus       370 aL~rRf~~~I~~~~P~~eeR~~Il~~~l  397 (496)
                      ++++|   .+.++.|+.++...+++..+
T Consensus       128 tI~SR---~~~f~~l~~~~i~~~L~~~~  152 (305)
T 2gno_A          128 TIKSR---VFRVVVNVPKEFRDLVKEKI  152 (305)
T ss_dssp             HHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred             HHHce---eEeCCCCCHHHHHHHHHHHh
Confidence            99999   69999999999999988876

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=99.21  E-value=2.5e-12  Score=132.76  Aligned_cols=228  Identities=19%  Similarity=0.210  Sum_probs=140.2

Q ss_pred             CCCCcHHHHHHHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHH
Q 010975          188 PNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAK  267 (496)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAr  267 (496)
                      |+++........+.+........+...-.+++|......++.+.+....          .....++++|++||||+++|+
T Consensus       101 KP~~~~~L~~~i~~~l~~~~~~~~~~~~~~~ig~s~~~~~~~~~~~~~a----------~~~~~vli~GesGtGKe~lAr  170 (368)
T 3dzd_A          101 KPFSVERFLLTIKHAFEEYSKKAPPQEEIEFVGEHPKILEIKRLIPKIA----------KSKAPVLITGESGTGKEIVAR  170 (368)
T ss_dssp             SSCCHHHHHHHHHHHHHHHSCCCCCCCCCCCCCCSHHHHHHHHHHHHHH----------TSCSCEEEECCTTSSHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhhhhhcccccccccccchHHHHHHhhhhhhh----------ccchhheEEeCCCchHHHHHH
Confidence            4556566665555554443332222233568888887777776653322          122469999999999999999


Q ss_pred             HHHhhhcce--eeeeeccccccc---------ccCChHH---HHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHH
Q 010975          268 AVATECKTT--FFNISASSVVSK---------WRGDSEK---LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEA  333 (496)
Q Consensus       268 alA~~l~~~--~i~v~~s~l~~~---------~~G~~e~---~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~  333 (496)
                      +++...+..  |+.++|+.+...         ..|...+   .-...|+.+..   ++||||||+.+...          
T Consensus       171 ~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~~~----------  237 (368)
T 3dzd_A          171 LIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGELDQR----------  237 (368)
T ss_dssp             HHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGSCHH----------
T ss_pred             HHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCC---CeEEecChhhCCHH----------
Confidence            999987543  999999865322         1111111   01124555554   79999999988433          


Q ss_pred             hhhhhhhhhhhccC--------ccccCcEEEEEeccCCcc-------cccHHHHHHhhhhhcccCCCHHHH----HHHHH
Q 010975          334 SRRLKTELLIQMDG--------LTQSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEAR----RAMFE  394 (496)
Q Consensus       334 ~~~i~~~Ll~~ld~--------~~~~~~~viVIatTn~p~-------~Ld~aL~rRf~~~I~~~~P~~eeR----~~Il~  394 (496)
                         ++..|+..++.        .....-.+.+|++||..-       .+.+.|..|+.. +.+..|...+|    ..+++
T Consensus       238 ---~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~-~~i~lPpLreR~~Di~~l~~  313 (368)
T 3dzd_A          238 ---VQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSV-FQIYLPPLRERGKDVILLAE  313 (368)
T ss_dssp             ---HHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTS-EEEECCCGGGSTTHHHHHHH
T ss_pred             ---HHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCC-eEEeCCChhhchhhHHHHHH
Confidence               23344444432        111222466788887651       245578888865 66666666555    44555


Q ss_pred             hhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCC
Q 010975          395 SLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA  449 (496)
Q Consensus       395 ~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~  449 (496)
                      +++.+....       ..+...++++..++.+.++.|.+++|++.+.++......
T Consensus       314 ~~l~~~~~~-------~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~  361 (368)
T 3dzd_A          314 YFLKKFAKE-------YKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILC  361 (368)
T ss_dssp             HHHHHHHHH-------TTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHH-------cCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence            555432211       112234577888999999999999999999888665443

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.21  E-value=1.4e-11  Score=127.12  Aligned_cols=172  Identities=15%  Similarity=0.100  Sum_probs=106.0

Q ss_pred             ccchhhcchHHHHHHhhhh-cccccCccccccccCccceeee--eCCCCChhHHHHHHHHhhh---------cceeeeee
Q 010975          214 KWESIKGLENAKRLLKEAV-VMPIKYPKYFTGLLSPWKGILL--FGPPGTGKTMLAKAVATEC---------KTTFFNIS  281 (496)
Q Consensus       214 ~l~dliG~e~vk~~L~e~l-~~~~~~~~~~~~~~~~~~~vLL--~GPpGtGKT~LAralA~~l---------~~~~i~v~  281 (496)
                      ..++++|.++..+.|.+.+ .......      ...+..++|  +||||+|||++++.+++.+         +..++.++
T Consensus        20 ~p~~l~gR~~el~~l~~~l~~~~~~~~------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~   93 (412)
T 1w5s_A           20 IPPELRVRRGEAEALARIYLNRLLSGA------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN   93 (412)
T ss_dssp             CCSSCSSSCHHHHHHHHHHHHHHHTSS------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCCCCCChHHHHHHHHHHHhHHHhcCC------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence            3478999999999998877 4322110      012357899  9999999999999999877         45677887


Q ss_pred             ccccccc----------------ccCC-hHHHHHHHHHHhh-hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhh
Q 010975          282 ASSVVSK----------------WRGD-SEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI  343 (496)
Q Consensus       282 ~s~l~~~----------------~~G~-~e~~l~~lf~~a~-~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~  343 (496)
                      +......                ..+. .......+..... ...|.||+|||+|.+.......       ......++.
T Consensus        94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~-------~~~l~~l~~  166 (412)
T 1w5s_A           94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIA-------AEDLYTLLR  166 (412)
T ss_dssp             GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSC-------HHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcc-------hHHHHHHHH
Confidence            6432110                0011 1222223332222 2346799999999986421100       122233344


Q ss_pred             hccCccccC--cEEEEEeccCCcc---ccc---HHHHHHhhhhhcccCCCHHHHHHHHHhhCC
Q 010975          344 QMDGLTQSD--ELVFVLAATNLPW---ELD---AAMLRRLEKRILVPLPDTEARRAMFESLLP  398 (496)
Q Consensus       344 ~ld~~~~~~--~~viVIatTn~p~---~Ld---~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~  398 (496)
                      .++......  .++.+|++|+.++   .++   +.+.+|+...+.+++++.++..++++..+.
T Consensus       167 ~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~  229 (412)
T 1w5s_A          167 VHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAE  229 (412)
T ss_dssp             HHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred             HHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHH
Confidence            443222112  5577787887664   344   666677766689999999999999977653

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=99.21  E-value=2e-12  Score=141.76  Aligned_cols=53  Identities=34%  Similarity=0.491  Sum_probs=45.5

Q ss_pred             hCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          208 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       208 ~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      ...++..|++++|++.+++.+...+..              ..+++|+||||||||++|+++|..+.
T Consensus        33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           33 IEVPEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             SCCCSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             ccccccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            456778899999999999988877642              25899999999999999999999874

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=99.19  E-value=1.7e-12  Score=134.90  Aligned_cols=215  Identities=21%  Similarity=0.255  Sum_probs=137.1

Q ss_pred             cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc---
Q 010975          215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---  288 (496)
Q Consensus       215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~---  288 (496)
                      ++.++|.....+.+.+.+....          .....++|+|++||||+++|++++...   +.+|+.++|+.+...   
T Consensus       136 ~~~~ig~s~~m~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~  205 (387)
T 1ny5_A          136 EEEYVFESPKMKEILEKIKKIS----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE  205 (387)
T ss_dssp             CCCCCCCSHHHHHHHHHHHHHT----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred             chhhhhccHHhhHHHHHHHHhc----------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence            4568888777777776654321          223578999999999999999999876   478999999875321   


Q ss_pred             ------ccCChHH---HHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc--------Ccccc
Q 010975          289 ------WRGDSEK---LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD--------GLTQS  351 (496)
Q Consensus       289 ------~~G~~e~---~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld--------~~~~~  351 (496)
                            ..|...+   .....|+.|..   ++||||||+.+...             ++..|+..++        +....
T Consensus       206 ~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~~~  269 (387)
T 1ny5_A          206 AELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGELSLE-------------AQAKLLRVIESGKFYRLGGRKEI  269 (387)
T ss_dssp             HHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGCCHH-------------HHHHHHHHHHHSEECCBTCCSBE
T ss_pred             HHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCcee
Confidence                  1111111   01234555554   79999999988433             2233444333        22222


Q ss_pred             CcEEEEEeccCCcc-------cccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccCCcC
Q 010975          352 DELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYSG  420 (496)
Q Consensus       352 ~~~viVIatTn~p~-------~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g~s~  420 (496)
                      ...+.||++||..-       .+.+.|..|+.. +.+..|...+|.+    ++++++........       ....++++
T Consensus       270 ~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~-~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~-------~~~~~~~~  341 (387)
T 1ny5_A          270 EVNVRILAATNRNIKELVKEGKFREDLYYRLGV-IEIEIPPLRERKEDIIPLANHFLKKFSRKYA-------KEVEGFTK  341 (387)
T ss_dssp             ECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTT-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTT-------CCCCEECH
T ss_pred             eccEEEEEeCCCCHHHHHHcCCccHHHHHhhcC-CeecCCcchhccccHHHHHHHHHHHHHHHcC-------CCCCCCCH
Confidence            33577888998752       256677778855 6677787766643    55555433211111       11235777


Q ss_pred             CchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHh
Q 010975          421 SDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL  469 (496)
Q Consensus       421 ~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al  469 (496)
                      ..+..+.++.|.+++|++.+.++........+      .|+.+|+-..+
T Consensus       342 ~a~~~l~~~~wpGNvreL~~~i~~~~~~~~~~------~i~~~~l~~~~  384 (387)
T 1ny5_A          342 SAQELLLSYPWYGNVRELKNVIERAVLFSEGK------FIDRGELSCLV  384 (387)
T ss_dssp             HHHHHHHHSCCTTHHHHHHHHHHHHHHHCCSS------EECHHHHHHHC
T ss_pred             HHHHHHHhCCCCcHHHHHHHHHHHHHHhCCCC------cCcHHHCcHhh
Confidence            88889999999999999999887665544332      37888886544

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=99.08  E-value=3.9e-11  Score=143.07  Aligned_cols=152  Identities=18%  Similarity=0.214  Sum_probs=104.3

Q ss_pred             CCCccchhhcchHHHHHHhhhhcccccC----------cccccc-----------------ccCccce--eeeeCCCCCh
Q 010975          211 PDVKWESIKGLENAKRLLKEAVVMPIKY----------PKYFTG-----------------LLSPWKG--ILLFGPPGTG  261 (496)
Q Consensus       211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~----------~~~~~~-----------------~~~~~~~--vLL~GPpGtG  261 (496)
                      +.++|+|+.|++++|+.+.+.+.+++.+          ++.+..                 ...+|++  +|+|||||||
T Consensus      1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A         1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp             ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred             CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence            4578999999999999999999888844          444443                 1124445  9999999999


Q ss_pred             hHHHHHHHHhhhc---ceeeeeeccccc------------ccccCC----hHHHHHHHHHHhhhcCCcceehhhHHHHHh
Q 010975          262 KTMLAKAVATECK---TTFFNISASSVV------------SKWRGD----SEKLIKVLFELARHHAPSTIFLDEIDAIIS  322 (496)
Q Consensus       262 KT~LAralA~~l~---~~~i~v~~s~l~------------~~~~G~----~e~~l~~lf~~a~~~~p~ILfIDEID~L~~  322 (496)
                      ||++|++++.+..   .+.+.|+..+..            +++.++    .++.++.++..|+...|+++|+|++|.|.+
T Consensus      1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A         1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred             hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence            9999999999773   444444444322            456666    899999999999999999999999999988


Q ss_pred             hhc---CCc-chhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc
Q 010975          323 QRG---EAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP  364 (496)
Q Consensus       323 ~r~---~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p  364 (496)
                      .+.   ... .+.....+++++++..+++...... |+|| +||+.
T Consensus      1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~-v~v~-~~n~~ 1218 (1706)
T 3cmw_A         1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN-TLLI-FINQI 1218 (1706)
T ss_dssp             HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTT-CEEE-EEECE
T ss_pred             ccccccccccccccHHHHHHHHHHHHHHhhhccCC-eEEE-Eeccc
Confidence            742   111 1224556778899999987655554 5455 66766

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=99.01  E-value=1.5e-10  Score=143.50  Aligned_cols=140  Identities=20%  Similarity=0.302  Sum_probs=91.1

Q ss_pred             ccceeeeeCCCCChhHHHH-HHHHhhhcceeeeeecccccccccCChHHHHHHHHHHh----h-----------hcCCcc
Q 010975          248 PWKGILLFGPPGTGKTMLA-KAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELA----R-----------HHAPST  311 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LA-ralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a----~-----------~~~p~I  311 (496)
                      ..+++||+||||||||++| +.++...+..++.++.+...+      ...+...++..    +           ..++.|
T Consensus      1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A         1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp             HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence            3478999999999999999 555555577888888776542      23333433322    1           122369


Q ss_pred             eehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccc-------cCcEEEEEeccCCcc-----cccHHHHHHhhhhh
Q 010975          312 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLAATNLPW-----ELDAAMLRRLEKRI  379 (496)
Q Consensus       312 LfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-------~~~~viVIatTn~p~-----~Ld~aL~rRf~~~I  379 (496)
                      |||||+|....++.+.+...+    ++.++++. ++...       ...++.+|||+|.|.     .++++++||| .++
T Consensus      1340 lFiDEinmp~~d~yg~q~~le----lLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi 1413 (2695)
T 4akg_A         1340 LFCDEINLPKLDKYGSQNVVL----FLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AIL 1413 (2695)
T ss_dssp             EEEETTTCSCCCSSSCCHHHH----HHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEE
T ss_pred             EEecccccccccccCchhHHH----HHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEE
Confidence            999999864333222222222    22222221 11111       113478999999994     7999999999 559


Q ss_pred             cccCCCHHHHHHHHHhhCCC
Q 010975          380 LVPLPDTEARRAMFESLLPS  399 (496)
Q Consensus       380 ~~~~P~~eeR~~Il~~~l~~  399 (496)
                      .++.|+.+++..|+..++..
T Consensus      1414 ~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A         1414 YLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp             ECCCCTTTHHHHHHHHHHHH
T ss_pred             EeCCCCHHHHHHHHHHHHHH
Confidence            99999999999999877643

>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*

Probab=98.97  E-value=8.3e-11  Score=96.68  Aligned_cols=85  Identities=22%  Similarity=0.309  Sum_probs=65.7

Q ss_pred             CHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchh
Q 010975          385 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED  464 (496)
Q Consensus       385 ~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eD  464 (496)
                      +.++|.+||+.++++.+...+++++.+|+.|+||||+||..+|++|++.++++.                  ...||++|
T Consensus         2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~------------------~~~i~~~d   63 (88)
T 3vlf_B            2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR------------------RKVATEKD   63 (88)
T ss_dssp             CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS------------------CSSBCHHH
T ss_pred             CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc------------------cccCCHHH
Confidence            567899999999999988889999999999999999999999999999999871                  12489999


Q ss_pred             HHHHhhcCCCCccc--hhhhhhhhc
Q 010975          465 VEIALKNTRPSAHL--HAHRYEKFN  487 (496)
Q Consensus       465 f~~Al~~~~Ps~~~--~~~~~~~~~  487 (496)
                      |..|++++.++...  ....|.+|+
T Consensus        64 f~~Al~~v~~~~~~~~~~~~y~~w~   88 (88)
T 3vlf_B           64 FLKAVDKVISGYKKFSSTSRYMQYN   88 (88)
T ss_dssp             HHHHHHHHTC---------------
T ss_pred             HHHHHHHHhcCcccccchhHHhccC
Confidence            99999999999765  378888886

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.95  E-value=1.4e-10  Score=106.64  Aligned_cols=100  Identities=15%  Similarity=0.156  Sum_probs=61.0

Q ss_pred             CCCCCccchhhc----chHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----cceeeee
Q 010975          209 GSPDVKWESIKG----LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNI  280 (496)
Q Consensus       209 ~~~~~~l~dliG----~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v  280 (496)
                      ++.+.+|+++++    +..+.+.+.+++....         ...+.+++|+|||||||||+++++++.+    |..++.+
T Consensus         3 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~   73 (180)
T 3ec2_A            3 RYWNANLDTYHPKNVSQNRALLTIRVFVHNFN---------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF   73 (180)
T ss_dssp             SCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCC---------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred             hhhhCccccccCCCHHHHHHHHHHHHHHHhcc---------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence            445667888875    3445555555443221         1234689999999999999999999987    5567777


Q ss_pred             ecccccccccCChHH-HHHHHHHHhhhcCCcceehhhHHH
Q 010975          281 SASSVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDA  319 (496)
Q Consensus       281 ~~s~l~~~~~G~~e~-~l~~lf~~a~~~~p~ILfIDEID~  319 (496)
                      +..++...+...... ....++...  ..|.+|+|||++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~  111 (180)
T 3ec2_A           74 DTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGS  111 (180)
T ss_dssp             EHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSS
T ss_pred             EHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCC
Confidence            776654332111000 000122222  2568999999964

>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*

Probab=98.91  E-value=2.5e-10  Score=92.48  Aligned_cols=81  Identities=22%  Similarity=0.297  Sum_probs=65.4

Q ss_pred             CHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchh
Q 010975          385 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED  464 (496)
Q Consensus       385 ~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eD  464 (496)
                      +.++|.+||+.++++.....+++++.+++.|+||||+||..+|++|++.++++.                  ..+||++|
T Consensus         2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------------~~~i~~~d   63 (83)
T 3aji_B            2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN------------------RYIVLAKD   63 (83)
T ss_dssp             CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC------------------CSSBCHHH
T ss_pred             CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------------cCCcCHHH
Confidence            678999999999999888788999999999999999999999999999988741                  13599999


Q ss_pred             HHHHhhcCCCCccchhhhh
Q 010975          465 VEIALKNTRPSAHLHAHRY  483 (496)
Q Consensus       465 f~~Al~~~~Ps~~~~~~~~  483 (496)
                      |..|+++++|+.+.++..|
T Consensus        64 f~~Al~~~~ps~~~~l~~y   82 (83)
T 3aji_B           64 FEKAYKTVIKKDEQEHEFY   82 (83)
T ss_dssp             HHHHHHHHCC---------
T ss_pred             HHHHHHHHccCchHHHHhc
Confidence            9999999999988555555

>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}

Probab=98.90  E-value=1.7e-10  Score=94.49  Aligned_cols=78  Identities=23%  Similarity=0.265  Sum_probs=70.0

Q ss_pred             cccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCC
Q 010975          380 LVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGP  459 (496)
Q Consensus       380 ~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~  459 (496)
                      .-.+|+.++|.+||+.++++.....+++++.+|+.|+||||+||..+|++|++.++++.                  ..+
T Consensus         7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~------------------~~~   68 (86)
T 2krk_A            7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER------------------RVH   68 (86)
T ss_dssp             CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT------------------CSE
T ss_pred             CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc------------------CCC
Confidence            34689999999999999999888888999999999999999999999999999998862                  135


Q ss_pred             CCchhHHHHhhcCCCC
Q 010975          460 IRPEDVEIALKNTRPS  475 (496)
Q Consensus       460 It~eDf~~Al~~~~Ps  475 (496)
                      ||++||..|+++++|.
T Consensus        69 I~~~df~~Al~~v~p~   84 (86)
T 2krk_A           69 VTQEDFEMAVAKVMQK   84 (86)
T ss_dssp             ECHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHccC
Confidence            9999999999998875

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.89  E-value=6.7e-10  Score=99.98  Aligned_cols=104  Identities=17%  Similarity=0.264  Sum_probs=66.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcC
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE  326 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~  326 (496)
                      ..++|+||+|+|||+|+++++..+   |.+.+.++..++...               +...+|.+|+|||++.+...   
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~---   98 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE---   98 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH---
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH---
Confidence            579999999999999999999987   666788887766543               11234689999999764211   


Q ss_pred             CcchhHHhhhhhhhhhhhccCccccCcEEEEEeccC-Cccccc--HHHHHHhhhhhccc
Q 010975          327 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN-LPWELD--AAMLRRLEKRILVP  382 (496)
Q Consensus       327 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn-~p~~Ld--~aL~rRf~~~I~~~  382 (496)
                         .       ...++..++.....+..++|+ ||+ .|..+.  +++.+|+..-..+.
T Consensus        99 ---~-------~~~l~~li~~~~~~g~~~iii-ts~~~p~~l~~~~~L~SRl~~g~~~~  146 (149)
T 2kjq_A           99 ---E-------QALLFSIFNRFRNSGKGFLLL-GSEYTPQQLVIREDLRTRMAYCLVYE  146 (149)
T ss_dssp             ---H-------HHHHHHHHHHHHHHTCCEEEE-EESSCTTTSSCCHHHHHHGGGSEECC
T ss_pred             ---H-------HHHHHHHHHHHHHcCCcEEEE-ECCCCHHHccccHHHHHHHhcCeeEE
Confidence               0       223334443322333333444 455 454332  89999997655444

>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}

Probab=98.82  E-value=3.9e-10  Score=90.31  Aligned_cols=75  Identities=25%  Similarity=0.322  Sum_probs=67.2

Q ss_pred             cCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCC
Q 010975          382 PLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIR  461 (496)
Q Consensus       382 ~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It  461 (496)
                      |+|+.++|.+||+.++++.....+++++.+++.|+||||+||..+|++|++.++++.                  ...||
T Consensus         1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------------~~~i~   62 (78)
T 3kw6_A            1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER------------------RVHVT   62 (78)
T ss_dssp             CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT------------------CSEEC
T ss_pred             CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------------------CCCCC
Confidence            689999999999999999888788999999999999999999999999999998851                  13589


Q ss_pred             chhHHHHhhcCCC
Q 010975          462 PEDVEIALKNTRP  474 (496)
Q Consensus       462 ~eDf~~Al~~~~P  474 (496)
                      ++||..|++++..
T Consensus        63 ~~d~~~Al~~v~~   75 (78)
T 3kw6_A           63 QEDFEMAVAKVMQ   75 (78)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988754

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.77  E-value=9e-10  Score=102.92  Aligned_cols=99  Identities=18%  Similarity=0.257  Sum_probs=59.5

Q ss_pred             CCccchhhcchH----HHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccc
Q 010975          212 DVKWESIKGLEN----AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS  284 (496)
Q Consensus       212 ~~~l~dliG~e~----vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~  284 (496)
                      +.+|+++++.+.    +.+.+.+++....   ..     ..+.+++|+||||||||++|+++++.+   +.+++.+++.+
T Consensus        21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~   92 (202)
T 2w58_A           21 RASLSDVDLNDDGRIKAIRFAERFVAEYE---PG-----KKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPE   92 (202)
T ss_dssp             CCCTTSSCCSSHHHHHHHHHHHHHHHHCC---SS-----CCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred             cCCHhhccCCChhHHHHHHHHHHHHHHhh---hc-----cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHH
Confidence            456888887553    3334444432211   00     012689999999999999999999988   66788888776


Q ss_pred             ccccccCCh-HHHHHHHHHHhhhcCCcceehhhHHHH
Q 010975          285 VVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDAI  320 (496)
Q Consensus       285 l~~~~~G~~-e~~l~~lf~~a~~~~p~ILfIDEID~L  320 (496)
                      +........ ...+..++.....  +.+|+|||++..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~  127 (202)
T 2w58_A           93 LFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE  127 (202)
T ss_dssp             HHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred             HHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence            554322110 0011222333322  369999999653

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=98.68  E-value=4e-09  Score=105.92  Aligned_cols=179  Identities=17%  Similarity=0.154  Sum_probs=103.3

Q ss_pred             CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc----
Q 010975          211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV----  286 (496)
Q Consensus       211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~----  286 (496)
                      +....+.++|.++..+.|.+ +..               ..++|+||+|+|||++++.++++.+..++.+++....    
T Consensus         8 ~~~~~~~~~gR~~el~~L~~-l~~---------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~   71 (357)
T 2fna_A            8 PKDNRKDFFDREKEIEKLKG-LRA---------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNY   71 (357)
T ss_dssp             CCCSGGGSCCCHHHHHHHHH-TCS---------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSC
T ss_pred             CCCCHHHhcChHHHHHHHHH-hcC---------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccC
Confidence            44456789999999999888 632               3799999999999999999999887667777765320    


Q ss_pred             -c--c-------------------------c-----cC---C------hHHHHHHHHHHhhhc--CCcceehhhHHHHHh
Q 010975          287 -S--K-------------------------W-----RG---D------SEKLIKVLFELARHH--APSTIFLDEIDAIIS  322 (496)
Q Consensus       287 -~--~-------------------------~-----~G---~------~e~~l~~lf~~a~~~--~p~ILfIDEID~L~~  322 (496)
                       +  .                         .     .+   .      ....+..+++.....  .|.+|+|||++.+..
T Consensus        72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~  151 (357)
T 2fna_A           72 ISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK  151 (357)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG
T ss_pred             CCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc
Confidence             0  0                         0     00   0      011233333333322  378999999998743


Q ss_pred             hhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccH---------HHHHHhhhhhcccCCCHHHHHHHH
Q 010975          323 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA---------AMLRRLEKRILVPLPDTEARRAMF  393 (496)
Q Consensus       323 ~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~---------aL~rRf~~~I~~~~P~~eeR~~Il  393 (496)
                      ...         ..+...+-..++.    ..++.+|.|++....+..         .+..|+...+.+++.+.++..+++
T Consensus       152 ~~~---------~~~~~~l~~~~~~----~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l  218 (357)
T 2fna_A          152 LRG---------VNLLPALAYAYDN----LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFL  218 (357)
T ss_dssp             CTT---------CCCHHHHHHHHHH----CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHH
T ss_pred             cCc---------hhHHHHHHHHHHc----CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHH
Confidence            100         1111112112221    112445555544321211         133354456889999999999999


Q ss_pred             HhhCCCCCCCCCCCcceeeecccCCc
Q 010975          394 ESLLPSQTGEESLPYDLLVERTEGYS  419 (496)
Q Consensus       394 ~~~l~~~~~~~~~~l~~la~~t~g~s  419 (496)
                      +..+.......+ +...+...+.|+.
T Consensus       219 ~~~~~~~~~~~~-~~~~i~~~t~G~P  243 (357)
T 2fna_A          219 RRGFQEADIDFK-DYEVVYEKIGGIP  243 (357)
T ss_dssp             HHHHHHHTCCCC-CHHHHHHHHCSCH
T ss_pred             HHHHHHcCCCCC-cHHHHHHHhCCCH
Confidence            876542222211 1255667777754

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=98.62  E-value=1.5e-08  Score=101.64  Aligned_cols=183  Identities=17%  Similarity=0.159  Sum_probs=101.6

Q ss_pred             CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc----
Q 010975          211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV----  286 (496)
Q Consensus       211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~----  286 (496)
                      |....+.++|.++..+.|.+.+..              .+.++|+||+|+|||++++.+++..+  ++.+++....    
T Consensus         7 ~~~~~~~~~gR~~el~~L~~~l~~--------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~   70 (350)
T 2qen_A            7 PKTRREDIFDREEESRKLEESLEN--------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG   70 (350)
T ss_dssp             CCCSGGGSCSCHHHHHHHHHHHHH--------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred             CCCChHhcCChHHHHHHHHHHHhc--------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence            444557899999999999887742              14799999999999999999999876  5555543221    


Q ss_pred             --------c---ccc-------------------------CChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcch
Q 010975          287 --------S---KWR-------------------------GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE  330 (496)
Q Consensus       287 --------~---~~~-------------------------G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~  330 (496)
                              .   ...                         ......+..+...+....|.+|+|||++.+......    
T Consensus        71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~----  146 (350)
T 2qen_A           71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR----  146 (350)
T ss_dssp             CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTT----
T ss_pred             CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCcc----
Confidence                    0   000                         011122222222222234789999999987431000    


Q ss_pred             hHHhhhhhhhhhhhccCccccCcEEEEEeccCCccccc---------HHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975          331 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD---------AAMLRRLEKRILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       331 ~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld---------~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                        ....+...|-..++..   . ++.+|.|+.....+.         ..+..|+...+.+++.+.++..++++..+....
T Consensus       147 --~~~~~~~~L~~~~~~~---~-~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~  220 (350)
T 2qen_A          147 --GGKELLALFAYAYDSL---P-NLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN  220 (350)
T ss_dssp             --TTHHHHHHHHHHHHHC---T-TEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred             --chhhHHHHHHHHHHhc---C-CeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC
Confidence              0011122222222211   1 234444443321111         122335445688899999999999987654333


Q ss_pred             CC-CCCCcceeeecccCCc
Q 010975          402 GE-ESLPYDLLVERTEGYS  419 (496)
Q Consensus       402 ~~-~~~~l~~la~~t~g~s  419 (496)
                      .. .......+...+.|+.
T Consensus       221 ~~~~~~~~~~i~~~tgG~P  239 (350)
T 2qen_A          221 LDVPENEIEEAVELLDGIP  239 (350)
T ss_dssp             CCCCHHHHHHHHHHHTTCH
T ss_pred             CCCCHHHHHHHHHHhCCCH
Confidence            22 1122344566677754

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=98.58  E-value=1.4e-08  Score=95.92  Aligned_cols=126  Identities=14%  Similarity=0.138  Sum_probs=74.9

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh--------hc-ceeeeeeccccccccc----------CC-----hHHHHHHHHHHhhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE--------CK-TTFFNISASSVVSKWR----------GD-----SEKLIKVLFELARH  306 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~--------l~-~~~i~v~~s~l~~~~~----------G~-----~e~~l~~lf~~a~~  306 (496)
                      -.|++|+||+|||++|..++..        .| ++++..+..++.-...          ..     ....+..++..+. 
T Consensus         7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~-   85 (199)
T 2r2a_A            7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE-   85 (199)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG-
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc-
Confidence            5789999999999999886433        34 6666666555532221          11     1122222221122 


Q ss_pred             cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCH
Q 010975          307 HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDT  386 (496)
Q Consensus       307 ~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~  386 (496)
                      ...+||+|||++.+.+.+......        ..++..+.......  +-||.+|+.+..++.++++|++..+++..|..
T Consensus        86 ~~~~vliIDEAq~l~~~~~~~~e~--------~rll~~l~~~r~~~--~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~  155 (199)
T 2r2a_A           86 NIGSIVIVDEAQDVWPARSAGSKI--------PENVQWLNTHRHQG--IDIFVLTQGPKLLDQNLRTLVRKHYHIASNKM  155 (199)
T ss_dssp             GTTCEEEETTGGGTSBCCCTTCCC--------CHHHHGGGGTTTTT--CEEEEEESCGGGBCHHHHTTEEEEEEEEECSS
T ss_pred             cCceEEEEEChhhhccCccccchh--------HHHHHHHHhcCcCC--eEEEEECCCHHHHhHHHHHHhheEEEEcCccc
Confidence            345799999999986543221110        12333333222222  33455677799999999999998888887644


Q ss_pred             H
Q 010975          387 E  387 (496)
Q Consensus       387 e  387 (496)
                      .
T Consensus       156 ~  156 (199)
T 2r2a_A          156 G  156 (199)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B

Probab=98.52  E-value=1.1e-08  Score=82.75  Aligned_cols=79  Identities=22%  Similarity=0.272  Sum_probs=49.9

Q ss_pred             HHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHH
Q 010975          387 EARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVE  466 (496)
Q Consensus       387 eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~  466 (496)
                      ++|.+||+.++++.....+++++.+++.|+||||+||..+|++|++.++++.                  ...||++||.
T Consensus         1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~------------------~~~i~~~df~   62 (82)
T 2dzn_B            1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN------------------RYVILQSDLE   62 (82)
T ss_dssp             -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT------------------CSEECHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------------cCCcCHHHHH
Confidence            4789999999988887778999999999999999999999999999998861                  1348999999


Q ss_pred             HHhhcCC-CCccc-hhhhh
Q 010975          467 IALKNTR-PSAHL-HAHRY  483 (496)
Q Consensus       467 ~Al~~~~-Ps~~~-~~~~~  483 (496)
                      .|++++. |+.+. ++..|
T Consensus        63 ~Al~~v~~~~~~~~~~~~y   81 (82)
T 2dzn_B           63 EAYATQVKTDNTVDKFDFY   81 (82)
T ss_dssp             HHHHTTCC-----------
T ss_pred             HHHHHHHcCcCChHHHHhh
Confidence            9999995 55554 34433

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=98.51  E-value=2e-08  Score=101.32  Aligned_cols=120  Identities=18%  Similarity=0.231  Sum_probs=67.4

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhhcceeeeeec--ccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA--SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR  324 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~--s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r  324 (496)
                      .+.+.++|+||||+|||+||.++|.+.+.++..++.  .+..+.+....+..+..+.+......  +|+||+++.+....
T Consensus       121 ~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~  198 (331)
T 2vhj_A          121 YASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAA  198 (331)
T ss_dssp             EESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC---
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccccc
Confidence            344568999999999999999999876655444444  33333333455666666666665544  99999999885432


Q ss_pred             cCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHH
Q 010975          325 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAM  371 (496)
Q Consensus       325 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL  371 (496)
                      ..... .....+...+++..+.+.....+ +.+|+++| +...++++
T Consensus       199 ~~~s~-~G~v~~~lrqlL~~L~~~~k~~g-vtVIlttn-p~s~deal  242 (331)
T 2vhj_A          199 GGNTT-SGGISRGAFDLLSDIGAMAASRG-CVVIASLN-PTSNDDKI  242 (331)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHHHT-CEEEEECC-CSSCSSSH
T ss_pred             ccccc-cchHHHHHHHHHHHHHHHHhhCC-CEEEEEeC-CcccchhH
Confidence            21100 00112223344444443322223 44666777 44455444

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=98.48  E-value=1.4e-08  Score=102.21  Aligned_cols=98  Identities=21%  Similarity=0.257  Sum_probs=57.9

Q ss_pred             CCccchhhcch----HHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc----ceeeeeecc
Q 010975          212 DVKWESIKGLE----NAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISAS  283 (496)
Q Consensus       212 ~~~l~dliG~e----~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~----~~~i~v~~s  283 (496)
                      +.+|+++++..    .+.+.+.+++...   +.      ....+++|+||||||||+||+++|+++.    .+++.+++.
T Consensus       120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~---~~------~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~  190 (308)
T 2qgz_A          120 HIHLSDIDVNNASRMEAFSAILDFVEQY---PS------AEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP  190 (308)
T ss_dssp             SCCGGGSCCCSHHHHHHHHHHHHHHHHC---SC------SSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred             hCCHhhCcCCChHHHHHHHHHHHHHHhc---cc------cCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence            35788887643    2333444444321   10      1236899999999999999999999775    677777777


Q ss_pred             cccccccCCh-HHHHHHHHHHhhhcCCcceehhhHHHH
Q 010975          284 SVVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDAI  320 (496)
Q Consensus       284 ~l~~~~~G~~-e~~l~~lf~~a~~~~p~ILfIDEID~L  320 (496)
                      ++........ .......+....  .+.+|+|||++..
T Consensus       191 ~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~  226 (308)
T 2qgz_A          191 SFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE  226 (308)
T ss_dssp             HHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred             HHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence            6654332211 111111222222  3469999999543

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=98.45  E-value=1.2e-08  Score=107.56  Aligned_cols=146  Identities=18%  Similarity=0.160  Sum_probs=83.5

Q ss_pred             hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHH-Hhhhcceeeeeec-c---cccccccC
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV-ATECKTTFFNISA-S---SVVSKWRG  291 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAral-A~~l~~~~i~v~~-s---~l~~~~~G  291 (496)
                      .|+|++.+|+.|.-.+......       ....-|+||.|+||| ||++|+++ ++.+....+.... +   .+.....+
T Consensus       214 pI~G~e~vK~aLll~L~GG~~k-------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~  285 (506)
T 3f8t_A          214 PLPGAEEVGKMLALQLFSCVGK-------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKE  285 (506)
T ss_dssp             CSTTCHHHHHHHHHHHTTCCSS-------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEE
T ss_pred             ccCCCHHHHHHHHHHHcCCccc-------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEc
Confidence            3999999998888766443111       112238999999999 99999999 7766443332111 0   11111100


Q ss_pred             C--hHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc-------CccccCcEEEEEeccC
Q 010975          292 D--SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD-------GLTQSDELVFVLAATN  362 (496)
Q Consensus       292 ~--~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld-------~~~~~~~~viVIatTn  362 (496)
                      .  ..- -...+..|..   +|+|||||+.+..+.             +..|++.|+       |. .-+.++.||||+|
T Consensus       286 ~tG~~~-~~G~l~LAdg---Gvl~lDEIn~~~~~~-------------qsaLlEaMEe~~VtI~G~-~lparf~VIAA~N  347 (506)
T 3f8t_A          286 DRGWAL-RAGAAVLADG---GILAVDHLEGAPEPH-------------RWALMEAMDKGTVTVDGI-ALNARCAVLAAIN  347 (506)
T ss_dssp             SSSEEE-EECHHHHTTT---SEEEEECCTTCCHHH-------------HHHHHHHHHHSEEEETTE-EEECCCEEEEEEC
T ss_pred             CCCccc-CCCeeEEcCC---CeeehHhhhhCCHHH-------------HHHHHHHHhCCcEEECCE-EcCCCeEEEEEeC
Confidence            0  000 0112333333   799999998874332             233333332       33 3345678999999


Q ss_pred             Ccc-----------cccHHHHHHhhhh-hcccCCCHHH
Q 010975          363 LPW-----------ELDAAMLRRLEKR-ILVPLPDTEA  388 (496)
Q Consensus       363 ~p~-----------~Ld~aL~rRf~~~-I~~~~P~~ee  388 (496)
                      ..+           .|++++++||+.. +.++.|+.++
T Consensus       348 P~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~  385 (506)
T 3f8t_A          348 PGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGE  385 (506)
T ss_dssp             CCC--CCSCGGGGCCSCHHHHTTCSEEEETTC------
T ss_pred             cccccCCCCCccccCCChHHhhheeeEEEecCCCChhH
Confidence            864           7899999999753 3456665443

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=98.39  E-value=1.4e-07  Score=89.23  Aligned_cols=31  Identities=16%  Similarity=0.311  Sum_probs=26.8

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      .+++||+||||||||++|.++|+.++..++.
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~   88 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVIS   88 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence            3689999999999999999999998665543

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.37  E-value=2.7e-07  Score=114.75  Aligned_cols=130  Identities=16%  Similarity=0.141  Sum_probs=87.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS  329 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~  329 (496)
                      .+.++.||+|||||++++++|+.+|.+++.++|++-.+      ...+..+|..+.... +++++||++.+....-    
T Consensus       646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~~~evL----  714 (2695)
T 4akg_A          646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRLDEKVL----  714 (2695)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCHHHH----
T ss_pred             CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhcChHHH----
Confidence            47899999999999999999999999999999987543      344566676666544 7999999987633210    


Q ss_pred             hhHHhhhhhhhhhhhc---------cCc-cccCcEEEEEeccCCc----ccccHHHHHHhhhhhcccCCCHHHHHHHH
Q 010975          330 EHEASRRLKTELLIQM---------DGL-TQSDELVFVLAATNLP----WELDAAMLRRLEKRILVPLPDTEARRAMF  393 (496)
Q Consensus       330 ~~~~~~~i~~~Ll~~l---------d~~-~~~~~~viVIatTn~p----~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il  393 (496)
                       ... .+.+..+...+         +|. ..-.....|++|.|..    ..+++++++|| +.+.+..|+.+...+|+
T Consensus       715 -s~l-~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~  789 (2695)
T 4akg_A          715 -SAV-SANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAEMI  789 (2695)
T ss_dssp             -HHH-HHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHHH
T ss_pred             -HHH-HHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHHHH
Confidence             000 01111111111         111 1112234567788743    46999999999 45999999998888875

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=98.22  E-value=5.6e-07  Score=112.78  Aligned_cols=142  Identities=21%  Similarity=0.281  Sum_probs=84.4

Q ss_pred             cceeeeeCCCCChhHHHHHHHHh-hhcceeeeeecccccccccCChHHHHHHHHHH----hh----h--------cCCcc
Q 010975          249 WKGILLFGPPGTGKTMLAKAVAT-ECKTTFFNISASSVVSKWRGDSEKLIKVLFEL----AR----H--------HAPST  311 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~-~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~----a~----~--------~~p~I  311 (496)
                      .+++||+||||||||++++.... ..+.+++.++++.-.+      ...+...++.    ..    +        .+..|
T Consensus      1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A         1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp             TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence            36899999999999987765444 4477788888776432      2333333332    01    0        11249


Q ss_pred             eehhhHHHHHhhhcCCcchhHHhhhhhhh--hhhhccCccccCcEEEEEeccCCcc-----cccHHHHHHhhhhhcccCC
Q 010975          312 IFLDEIDAIISQRGEARSEHEASRRLKTE--LLIQMDGLTQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLP  384 (496)
Q Consensus       312 LfIDEID~L~~~r~~~~~~~~~~~~i~~~--Ll~~ld~~~~~~~~viVIatTn~p~-----~Ld~aL~rRf~~~I~~~~P  384 (496)
                      +||||++.-..+.-+.+...+..+++.+.  +...-+........+.+|||+|.|.     .+++++.|||.. +.++.|
T Consensus      1378 lFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~v-i~i~~p 1456 (3245)
T 3vkg_A         1378 VFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPI-LLVDFP 1456 (3245)
T ss_dssp             EEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCE-EECCCC
T ss_pred             EEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceE-EEeCCC
Confidence            99999975322221211111222221110  0000000001123477899999883     599999999966 999999


Q ss_pred             CHHHHHHHHHhhC
Q 010975          385 DTEARRAMFESLL  397 (496)
Q Consensus       385 ~~eeR~~Il~~~l  397 (496)
                      +.++...|+..++
T Consensus      1457 s~esL~~If~til 1469 (3245)
T 3vkg_A         1457 STSSLTQIYGTFN 1469 (3245)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999976543

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=98.03  E-value=2.5e-06  Score=83.88  Aligned_cols=26  Identities=46%  Similarity=0.663  Sum_probs=23.6

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      .++++|+||||||||++|+++|+.++
T Consensus       104 ~n~~~l~GppgtGKt~~a~ala~~~~  129 (267)
T 1u0j_A          104 RNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhhhc
Confidence            46899999999999999999999754

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=98.01  E-value=2.3e-06  Score=103.67  Aligned_cols=117  Identities=21%  Similarity=0.314  Sum_probs=74.7

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccc----cc------------cCChHHHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----KW------------RGDSEKLIKVLFELARH  306 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~----~~------------~G~~e~~l~~lf~~a~~  306 (496)
                      +.++++++|+||||||||+||.+++.+.   |..+..++..+..+    ..            ....+..++.+...++.
T Consensus      1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A         1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence            4567889999999999999999998876   44555555543321    11            22455667777777888


Q ss_pred             cCCcceehhhHHHHHhhh---cCCcchhH-HhhhhhhhhhhhccCccccCcEEEEEeccCCc
Q 010975          307 HAPSTIFLDEIDAIISQR---GEARSEHE-ASRRLKTELLIQMDGLTQSDELVFVLAATNLP  364 (496)
Q Consensus       307 ~~p~ILfIDEID~L~~~r---~~~~~~~~-~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p  364 (496)
                      .+|++|+|||++.+.+..   ++....+. ...++..+++..|.+...... +.|| +||..
T Consensus      1504 ~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~-v~VI-~tNq~ 1563 (2050)
T 3cmu_A         1504 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN-TLLI-FINQI 1563 (2050)
T ss_dssp             TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT-CEEE-EEECE
T ss_pred             CCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCC-cEEE-EEccc
Confidence            899999999998776532   11111111 124556667777766554444 3344 55544

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.95  E-value=2.1e-05  Score=72.55  Aligned_cols=26  Identities=35%  Similarity=0.590  Sum_probs=22.9

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcce
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTT  276 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~  276 (496)
                      .+.|.||+|+|||||++.++..++..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~i~   27 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            47899999999999999999987643

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=97.77  E-value=1e-05  Score=81.75  Aligned_cols=126  Identities=15%  Similarity=0.131  Sum_probs=81.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcc----e--eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHH
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKT----T--FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDA  319 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~----~--~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~  319 (496)
                      +.+||+||+|.||++.++.+++.+..    +  .+.++.           ...++.+.+.+..    ....|++|||+|.
T Consensus        19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~plf~~~kvvii~~~~~   87 (343)
T 1jr3_D           19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-----------NTDWNAIFSLCQAMSLFASRQTLLLLLPEN   87 (343)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-----------TCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred             cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-----------CCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence            57999999999999999999987631    2  222221           1223444444432    2346999999976


Q ss_pred             -HHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCC-----cccccHHHHHHhhhhhcccCCCHHHHHHHH
Q 010975          320 -IISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-----PWELDAAMLRRLEKRILVPLPDTEARRAMF  393 (496)
Q Consensus       320 -L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~-----p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il  393 (496)
                       +.             ....+.|+..++.  .....++|+++++.     ...+.+++.+|+.. +.+..++.++....+
T Consensus        88 kl~-------------~~~~~aLl~~le~--p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~-~~~~~l~~~~l~~~l  151 (343)
T 1jr3_D           88 GPN-------------AAINEQLLTLTGL--LHDDLLLIVRGNKLSKAQENAAWFTALANRSVQ-VTCQTPEQAQLPRWV  151 (343)
T ss_dssp             CCC-------------TTHHHHHHHHHTT--CBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEE-EEECCCCTTHHHHHH
T ss_pred             CCC-------------hHHHHHHHHHHhc--CCCCeEEEEEcCCCChhhHhhHHHHHHHhCceE-EEeeCCCHHHHHHHH
Confidence             42             2234557777763  23445555555442     23577888889854 889899999999888


Q ss_pred             HhhCCCCCC
Q 010975          394 ESLLPSQTG  402 (496)
Q Consensus       394 ~~~l~~~~~  402 (496)
                      +..+...+.
T Consensus       152 ~~~~~~~g~  160 (343)
T 1jr3_D          152 AARAKQLNL  160 (343)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHcCC
Confidence            888765543

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.76  E-value=2.6e-05  Score=98.03  Aligned_cols=134  Identities=16%  Similarity=0.161  Sum_probs=85.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS  329 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~  329 (496)
                      .+..+.||+|||||.+++.+|+.+|++++.++|++-.+      ...+.++|.-+.... +..++||++.+-...-..  
T Consensus       605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~G-aW~cfDEfNrl~~~vLSv--  675 (3245)
T 3vkg_A          605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQCG-AWGCFDEFNRLEERILSA--  675 (3245)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCHHHHHH--
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhcC-cEEEehhhhcCCHHHHHH--
Confidence            35689999999999999999999999999999987543      234556666555443 689999998763221000  


Q ss_pred             hhHHhhhhhhhhhhh-----cc-Ccc-ccCcEEEEEeccCCc----ccccHHHHHHhhhhhcccCCCHHHHHHHH
Q 010975          330 EHEASRRLKTELLIQ-----MD-GLT-QSDELVFVLAATNLP----WELDAAMLRRLEKRILVPLPDTEARRAMF  393 (496)
Q Consensus       330 ~~~~~~~i~~~Ll~~-----ld-~~~-~~~~~viVIatTn~p----~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il  393 (496)
                      -......+..++...     ++ |.. .-.....|++|.|.-    ..|++.|++||-. +.+..||.+...+|+
T Consensus       676 v~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~-v~m~~Pd~~~i~ei~  749 (3245)
T 3vkg_A          676 VSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRS-MAMIKPDREMIAQVM  749 (3245)
T ss_dssp             HHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEE-EECCSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEE-EEEeCCCHHHHHHHH
Confidence            000001111111111     11 210 111224567788743    4699999999944 999999988887765

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.58  E-value=7.1e-06  Score=84.70  Aligned_cols=114  Identities=15%  Similarity=0.088  Sum_probs=63.3

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHh-hh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS-QR  324 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~-~r  324 (496)
                      +.++..++|+||||+||||++++++..++..++.+....-      .....+.      ...+..++++||++.+.. .+
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg------~~~q~~~~l~dd~~~~~~~~r  233 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELG------VAIDQFLVVFEDVKGTGGESR  233 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHG------GGTTCSCEEETTCCCSTTTTT
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHH------HhcchhHHHHHHHHHHHHHHh
Confidence            4556789999999999999999999988776655432211      0011111      112335789999987754 21


Q ss_pred             cCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHH--Hhhhhhcc
Q 010975          325 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILV  381 (496)
Q Consensus       325 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~r--Rf~~~I~~  381 (496)
                      +........   ....+...++|.      +.|++++|+++.+ +++++  |++..+..
T Consensus       234 ~l~~~~~~~---~~~~l~~~ldG~------v~v~~~tn~~~~l-~alf~pg~ld~~~~~  282 (377)
T 1svm_A          234 DLPSGQGIN---NLDNLRDYLDGS------VKVNLEKKHLNKR-TQIFPPGIVTMNEYS  282 (377)
T ss_dssp             TCCCCSHHH---HHHTTHHHHHCS------SCEEECCSSSCCE-EECCCCEEEEECSCC
T ss_pred             hccccCcch---HHHHHHHHhcCC------CeEeeccCchhhH-HHhhcCcccChhHHh
Confidence            111100000   112334444432      3356678888777 34444  45443333

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=97.56  E-value=8.9e-05  Score=80.15  Aligned_cols=49  Identities=12%  Similarity=0.112  Sum_probs=39.1

Q ss_pred             ccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhh
Q 010975          214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ....++|.+...++|.+.+....          ...+-++|+||+|+|||+||+.+++.
T Consensus       122 ~~~~~vGR~~~l~~L~~~L~~~~----------~~~~~v~I~G~~GiGKTtLa~~~~~~  170 (591)
T 1z6t_A          122 RPVVFVTRKKLVNAIQQKLSKLK----------GEPGWVTIHGMAGCGKSVLAAEAVRD  170 (591)
T ss_dssp             CCSSCCCCHHHHHHHHHHHTTST----------TSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CCCeecccHHHHHHHHHHHhccc----------CCCceEEEEcCCCCCHHHHHHHHHhc
Confidence            45679999999999999875321          12356899999999999999999764

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.52  E-value=8.9e-06  Score=85.86  Aligned_cols=131  Identities=18%  Similarity=0.162  Sum_probs=81.7

Q ss_pred             CcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEec---------cC---CcccccHHHHHHhh
Q 010975          309 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA---------TN---LPWELDAAMLRRLE  376 (496)
Q Consensus       309 p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIat---------Tn---~p~~Ld~aL~rRf~  376 (496)
                      |.|+||||+|.|.             ....+.|+..++..   ...++|++|         ++   .+..+++.+++||.
T Consensus       296 ~~VliIDEa~~l~-------------~~a~~aLlk~lEe~---~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~  359 (456)
T 2c9o_A          296 PGVLFVDEVHMLD-------------IECFTYLHRALESS---IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVM  359 (456)
T ss_dssp             ECEEEEESGGGCB-------------HHHHHHHHHHTTST---TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEE
T ss_pred             ceEEEEechhhcC-------------HHHHHHHHHHhhcc---CCCEEEEecCCccccccccccccccccCChhHHhhcc
Confidence            4699999999873             33557788888743   223555555         33   26679999999998


Q ss_pred             hhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCC
Q 010975          377 KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQ  456 (496)
Q Consensus       377 ~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~  456 (496)
                      . +.+++|+.++..++++..+......              ++...+..+.+.++.+..|+.+..++.....+...   .
T Consensus       360 ~-~~~~~~~~~e~~~iL~~~~~~~~~~--------------~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~---~  421 (456)
T 2c9o_A          360 I-IRTMLYTPQEMKQIIKIRAQTEGIN--------------ISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKIN---G  421 (456)
T ss_dssp             E-EECCCCCHHHHHHHHHHHHHHHTCC--------------BCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHT---T
T ss_pred             e-eeCCCCCHHHHHHHHHHHHHHhCCC--------------CCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhc---C
Confidence            7 6999999999999999876432211              22223333333332344555544444332111100   1


Q ss_pred             CCCCCchhHHHHhhcCC
Q 010975          457 IGPIRPEDVEIALKNTR  473 (496)
Q Consensus       457 ~~~It~eDf~~Al~~~~  473 (496)
                      ...||.+|+.+|+..+-
T Consensus       422 ~~~v~~~~v~~~~~~~~  438 (456)
T 2c9o_A          422 KDSIEKEHVEEISELFY  438 (456)
T ss_dssp             CSSBCHHHHHHHHHHSC
T ss_pred             CCccCHHHHHHHHHHhc
Confidence            13489999999998764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.48  E-value=5.2e-05  Score=68.57  Aligned_cols=35  Identities=17%  Similarity=0.342  Sum_probs=30.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASS  284 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~  284 (496)
                      ..++|+|+||+||||+++.+++.++.+++.++...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~   38 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS   38 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence            46899999999999999999999998888766543

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.41  E-value=6.7e-05  Score=68.38  Aligned_cols=33  Identities=27%  Similarity=0.429  Sum_probs=29.1

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      .+.++|+||||+||||+++.+|+.++.+++..+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d   37 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD   37 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence            357999999999999999999999998887643

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.40  E-value=0.00019  Score=66.89  Aligned_cols=39  Identities=21%  Similarity=0.267  Sum_probs=30.5

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS  284 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~  284 (496)
                      +.+..-++|+||||+|||++++.++...+.+++.++...
T Consensus        17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~   55 (220)
T 2cvh_A           17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG   55 (220)
T ss_dssp             BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence            344566899999999999999999985566777776543

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=97.38  E-value=0.00011  Score=77.43  Aligned_cols=56  Identities=21%  Similarity=0.399  Sum_probs=36.8

Q ss_pred             hhhhCCCCCccchhh-cchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          205 DIIRGSPDVKWESIK-GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       205 ~~~~~~~~~~l~dli-G~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..++.+.+|+++- ++..+...+...+...             ...++|.|+||||||+++.+++..+
T Consensus        13 ~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~-------------~~~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           13 GLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEK-------------KHHVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             --------CCSSCCCHHHHHHHHHHHHHHHSS-------------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCccccCCCccccCCHHHHHHHHHHHHHHhcC-------------CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            455667777788875 6666666666555321             1379999999999999999999877

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.36  E-value=7.4e-05  Score=70.77  Aligned_cols=39  Identities=21%  Similarity=0.233  Sum_probs=29.5

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhh--h-------cceeeeeeccc
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATE--C-------KTTFFNISASS  284 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~--l-------~~~~i~v~~s~  284 (496)
                      +.+..-++|+||||+|||++++.++..  .       +...+.++...
T Consensus        21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            344566899999999999999999984  3       34566666543

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.36  E-value=0.00013  Score=73.46  Aligned_cols=78  Identities=18%  Similarity=0.270  Sum_probs=50.2

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeeccccc-cc-------ccC----------------C
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVV-SK-------WRG----------------D  292 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s~l~-~~-------~~G----------------~  292 (496)
                      +++..-++|+||||+|||+++..++...         +.++++++..... ..       ..|                .
T Consensus       104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~  183 (324)
T 2z43_A          104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN  183 (324)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred             CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence            4455669999999999999999998764         4567777665421 00       000                1


Q ss_pred             hH---HHHHHHHHHhhh-cCCcceehhhHHHHHhh
Q 010975          293 SE---KLIKVLFELARH-HAPSTIFLDEIDAIISQ  323 (496)
Q Consensus       293 ~e---~~l~~lf~~a~~-~~p~ILfIDEID~L~~~  323 (496)
                      .+   ..+..+....+. ..+.+|+||.+..+...
T Consensus       184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~  218 (324)
T 2z43_A          184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA  218 (324)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence            11   122233334444 56789999999998754

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.33  E-value=9.8e-05  Score=68.56  Aligned_cols=34  Identities=35%  Similarity=0.500  Sum_probs=29.5

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      +...++|.||||+||||+++.+++.++.+++..+
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d   57 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD   57 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence            3467999999999999999999999998887543

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.29  E-value=0.00017  Score=67.53  Aligned_cols=28  Identities=32%  Similarity=0.387  Sum_probs=23.2

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.+..-+.|.||+|+|||||++.++...
T Consensus        22 i~~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           22 IETQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3444568999999999999999998743

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.28  E-value=0.00025  Score=66.35  Aligned_cols=27  Identities=33%  Similarity=0.362  Sum_probs=22.8

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+...++|.||||+|||++++.++...
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           21 PQGFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            344568999999999999999999654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.27  E-value=0.00034  Score=81.43  Aligned_cols=52  Identities=12%  Similarity=0.095  Sum_probs=40.7

Q ss_pred             CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhh
Q 010975          211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .+.....++|.++..++|.+.+...-          ...+-+.|+|+.|+|||+||+.+++.
T Consensus       119 ~p~~~~~~vgR~~~~~~l~~~l~~~~----------~~~~~v~i~G~gG~GKTtLa~~~~~~  170 (1249)
T 3sfz_A          119 VPQRPVIFVTRKKLVHAIQQKLWKLN----------GEPGWVTIYGMAGCGKSVLAAEAVRD  170 (1249)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHTTT----------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred             CCCCCceeccHHHHHHHHHHHHhhcc----------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence            44445679999999999999874321          12256889999999999999999886

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.26  E-value=7.3e-05  Score=78.61  Aligned_cols=99  Identities=21%  Similarity=0.335  Sum_probs=70.2

Q ss_pred             ChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhh-hhhhhhhhhccCcc-------ccCcEEEEEecc--
Q 010975          292 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASR-RLKTELLIQMDGLT-------QSDELVFVLAAT--  361 (496)
Q Consensus       292 ~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~-~i~~~Ll~~ld~~~-------~~~~~viVIatT--  361 (496)
                      ..+...+..++.+..+  +++++||||+++.+...  ...+.+. -++..||..+++..       ...+++++|+|.  
T Consensus       236 ~~~~~~~~ai~~ae~~--~il~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf  311 (444)
T 1g41_A          236 NPEELKQKAIDAVEQN--GIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAF  311 (444)
T ss_dssp             CHHHHHHHHHHHHHHH--CEEEEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECC
T ss_pred             CHHHHHHHHHHHhccC--CeeeHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEecccc
Confidence            3456666677766432  69999999999765321  1223333 36678999998642       134557888886  


Q ss_pred             --CCcccccHHHHHHhhhhhcccCCCHHHHHHHHH
Q 010975          362 --NLPWELDAAMLRRLEKRILVPLPDTEARRAMFE  394 (496)
Q Consensus       362 --n~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~  394 (496)
                        +.|.++-|+|++||+.++.++.++.++..+|+.
T Consensus       312 ~~~~~~dlipel~~R~~i~i~l~~lt~~e~~~Il~  346 (444)
T 1g41_A          312 QVARPSDLIPELQGRLPIRVELTALSAADFERILT  346 (444)
T ss_dssp             SSCCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHH
T ss_pred             ccCChhhcchHHhcccceeeeCCCCCHHHHHHHHH
Confidence              345456689999999999999999999999994

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.24  E-value=0.00019  Score=73.46  Aligned_cols=77  Identities=22%  Similarity=0.286  Sum_probs=49.6

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc----------------ccCChHHHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELARH  306 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~----------------~~G~~e~~l~~lf~~a~~  306 (496)
                      +.+..-++|+||||+|||+|+..++..+   +.++++++.......                .....+..+..+-...+.
T Consensus        58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~  137 (356)
T 3hr8_A           58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRS  137 (356)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhh
Confidence            4455669999999999999999999875   556666765432210                011223333332223334


Q ss_pred             cCCcceehhhHHHHHh
Q 010975          307 HAPSTIFLDEIDAIIS  322 (496)
Q Consensus       307 ~~p~ILfIDEID~L~~  322 (496)
                      ..+.+++||.+..+.+
T Consensus       138 ~~~dlvVIDSi~~l~~  153 (356)
T 3hr8_A          138 GVVDLIVVDSVAALVP  153 (356)
T ss_dssp             SCCSEEEEECTTTCCC
T ss_pred             cCCCeEEehHhhhhcC
Confidence            6788999999877654

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.23  E-value=0.0003  Score=71.75  Aligned_cols=76  Identities=24%  Similarity=0.316  Sum_probs=48.7

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc----ccC------------ChHHHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----WRG------------DSEKLIKVLFELARH  306 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~----~~G------------~~e~~l~~lf~~a~~  306 (496)
                      +.+..-++|+||||+|||+|+..++...   +.+++.++.......    ..|            ..+..+..+...++.
T Consensus        58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~  137 (349)
T 2zr9_A           58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRS  137 (349)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhc
Confidence            4455669999999999999999998765   456666665432111    011            122222222233345


Q ss_pred             cCCcceehhhHHHHH
Q 010975          307 HAPSTIFLDEIDAII  321 (496)
Q Consensus       307 ~~p~ILfIDEID~L~  321 (496)
                      ..|.+|+||++..+.
T Consensus       138 ~~~~lIVIDsl~~l~  152 (349)
T 2zr9_A          138 GALDIIVIDSVAALV  152 (349)
T ss_dssp             TCCSEEEEECGGGCC
T ss_pred             CCCCEEEEcChHhhc
Confidence            678999999998876

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.22  E-value=0.00016  Score=64.54  Aligned_cols=31  Identities=29%  Similarity=0.247  Sum_probs=27.6

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      -++|.||||+||||+++.+++.++.+++..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d   33 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS   33 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence            5789999999999999999999998876554

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.20  E-value=0.00028  Score=71.68  Aligned_cols=78  Identities=18%  Similarity=0.182  Sum_probs=48.9

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeecccccc-c-------ccC----------------C
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVS-K-------WRG----------------D  292 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s~l~~-~-------~~G----------------~  292 (496)
                      +.+..-++|+||||+|||+++..+|...         +..+++++...... .       ..|                .
T Consensus       119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~  198 (343)
T 1v5w_A          119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYT  198 (343)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCC
Confidence            4555668999999999999999998862         45677776544211 0       000                0


Q ss_pred             hH---HHHHHHHHHhhh--cCCcceehhhHHHHHhh
Q 010975          293 SE---KLIKVLFELARH--HAPSTIFLDEIDAIISQ  323 (496)
Q Consensus       293 ~e---~~l~~lf~~a~~--~~p~ILfIDEID~L~~~  323 (496)
                      .+   ..+..+...+..  ..+.+|+||.+..+...
T Consensus       199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~  234 (343)
T 1v5w_A          199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV  234 (343)
T ss_dssp             TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence            11   112222333444  56789999999988754

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.19  E-value=0.00019  Score=65.22  Aligned_cols=32  Identities=41%  Similarity=0.708  Sum_probs=28.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      ..++|+|+||+||||+++.+++.++.+++.++
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d   43 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELASKSGLKYINVG   43 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence            56999999999999999999999998877654

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.18  E-value=0.00017  Score=65.25  Aligned_cols=30  Identities=33%  Similarity=0.600  Sum_probs=27.1

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      .++|.||||+||||+++.+|+.++.+++..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~   35 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS   35 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence            589999999999999999999999887653

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.18  E-value=0.00018  Score=65.66  Aligned_cols=32  Identities=34%  Similarity=0.439  Sum_probs=28.1

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      +.-++|.|+||+||||+++.+++.++.+++..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~   36 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATGLRLPLLSK   36 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence            45689999999999999999999998877654

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.16  E-value=9.5e-05  Score=68.39  Aligned_cols=31  Identities=23%  Similarity=0.147  Sum_probs=22.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh---cceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v  280 (496)
                      .-++++||||+||||++..++..+   +.+++.+
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~   37 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF   37 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            347899999999999997666654   4444433

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.14  E-value=0.00027  Score=72.50  Aligned_cols=77  Identities=22%  Similarity=0.316  Sum_probs=49.4

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccc----------------cCChHHHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----------------RGDSEKLIKVLFELARH  306 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~----------------~G~~e~~l~~lf~~a~~  306 (496)
                      +++..-++|+||||+|||++|..++...   +.+++.++...-....                ....+..+..+-...+.
T Consensus        71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~  150 (366)
T 1xp8_A           71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRS  150 (366)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred             ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhc
Confidence            4455678999999999999999998765   5567777654322110                01122322222223334


Q ss_pred             cCCcceehhhHHHHHh
Q 010975          307 HAPSTIFLDEIDAIIS  322 (496)
Q Consensus       307 ~~p~ILfIDEID~L~~  322 (496)
                      ..+.+|+||.+..+.+
T Consensus       151 ~~~~lVVIDsl~~l~~  166 (366)
T 1xp8_A          151 GAIDVVVVDSVAALTP  166 (366)
T ss_dssp             TCCSEEEEECTTTCCC
T ss_pred             CCCCEEEEeChHHhcc
Confidence            5678999999998864

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.13  E-value=0.00023  Score=65.26  Aligned_cols=32  Identities=38%  Similarity=0.588  Sum_probs=28.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh-hcceeeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE-CKTTFFNIS  281 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~-l~~~~i~v~  281 (496)
                      ..++|+|+||+||||+++.+++. +|.+++.++
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d   43 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAAELDGFQHLEVG   43 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence            56999999999999999999999 788777654

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.13  E-value=0.00019  Score=65.26  Aligned_cols=31  Identities=23%  Similarity=0.504  Sum_probs=27.6

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      .++|.|+||+||||+++.+++.+|.+++..+
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D   34 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD   34 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence            5899999999999999999999998876543

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.13  E-value=0.00021  Score=64.15  Aligned_cols=32  Identities=25%  Similarity=0.433  Sum_probs=28.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      .+++|.|+||+||||+++.+|+.+|.+++..+
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D   39 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD   39 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence            47999999999999999999999999887653

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.10  E-value=0.00065  Score=65.61  Aligned_cols=38  Identities=29%  Similarity=0.331  Sum_probs=31.6

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV  285 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l  285 (496)
                      .+..++|.|+||+||||+++.++..++..++.++...+
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~   68 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF   68 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence            34679999999999999999999999866666666555

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.08  E-value=0.00029  Score=64.33  Aligned_cols=38  Identities=26%  Similarity=0.351  Sum_probs=30.8

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV  285 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l  285 (496)
                      ++..++|.||||+||||+++.++...+...+.++..++
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~   45 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL   45 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence            34568999999999999999999987777677765443

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.06  E-value=0.00029  Score=63.24  Aligned_cols=30  Identities=30%  Similarity=0.750  Sum_probs=26.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      ..+.|.||||+||||+++.++..++.+++.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id   34 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD   34 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence            468999999999999999999999876553

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.04  E-value=0.0003  Score=64.01  Aligned_cols=31  Identities=19%  Similarity=0.373  Sum_probs=27.2

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      .-++|.|+||+||||+++.+++.++.+++..
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~   34 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA   34 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence            4689999999999999999999998776543

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.04  E-value=0.0003  Score=70.94  Aligned_cols=36  Identities=31%  Similarity=0.517  Sum_probs=31.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV  285 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l  285 (496)
                      +.++|.||+|+|||++++.+|+.++..++.++.-.+
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qv   41 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALI   41 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhh
Confidence            468999999999999999999999988888875443

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.03  E-value=0.00028  Score=62.68  Aligned_cols=29  Identities=34%  Similarity=0.520  Sum_probs=25.7

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      -++|.||||+||||+++.+ ..+|.+++.+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~   31 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL-KERGAKVIVM   31 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence            5789999999999999999 8888887654

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.03  E-value=0.00032  Score=64.89  Aligned_cols=31  Identities=32%  Similarity=0.510  Sum_probs=27.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      ..++|.|+||+||||+++.+++.++.+++.+
T Consensus        21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~   51 (201)
T 2cdn_A           21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST   51 (201)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence            4589999999999999999999999877654

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.02  E-value=0.00032  Score=64.17  Aligned_cols=32  Identities=22%  Similarity=0.404  Sum_probs=28.2

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      ..++|.|+||+||||+++.+++.++.+++..+
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d   41 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG   41 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence            56899999999999999999999998776543

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.01  E-value=0.00031  Score=62.92  Aligned_cols=31  Identities=23%  Similarity=0.440  Sum_probs=27.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      ..++|.|+||+||||+++.+++.++.+++..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~   33 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFVDT   33 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence            3589999999999999999999999877653

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.01  E-value=0.00077  Score=64.40  Aligned_cols=31  Identities=16%  Similarity=0.066  Sum_probs=24.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh---cceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v  280 (496)
                      .-++++||+|+||||++..++..+   +..++.+
T Consensus        13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~   46 (223)
T 2b8t_A           13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF   46 (223)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence            347889999999999999888877   4455544

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.00  E-value=0.00031  Score=63.82  Aligned_cols=31  Identities=29%  Similarity=0.553  Sum_probs=27.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      ..++|.|+||+||||+++.+++.++.+++..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~   35 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST   35 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence            4689999999999999999999998776554

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.99  E-value=0.00034  Score=62.90  Aligned_cols=30  Identities=33%  Similarity=0.389  Sum_probs=25.0

Q ss_pred             ceeeeeCCCCChhHHHHHHHHh-hhcceeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVAT-ECKTTFFN  279 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~-~l~~~~i~  279 (496)
                      .-++|.|+||+||||+++.+++ ..+..++.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~   33 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN   33 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred             eEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence            4689999999999999999998 56655544

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.99  E-value=0.00035  Score=67.72  Aligned_cols=32  Identities=28%  Similarity=0.397  Sum_probs=28.7

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNISA  282 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~  282 (496)
                      -++|.||||+||||+|+.+|..++.+++..+.
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~   34 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR   34 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence            47899999999999999999999988877664

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.98  E-value=0.0014  Score=65.49  Aligned_cols=71  Identities=18%  Similarity=0.153  Sum_probs=44.0

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccc-------------------c-ccCChHHHHHHHHHH
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS-------------------K-WRGDSEKLIKVLFEL  303 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~-------------------~-~~G~~e~~l~~lf~~  303 (496)
                      .++.-+++.||+|+||||++..+|..+   +..+..+++.....                   . ..+.........+..
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~  181 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH  181 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence            345678999999999999999999876   44454444321110                   0 011222222334455


Q ss_pred             hhhcCCcceehhhH
Q 010975          304 ARHHAPSTIFLDEI  317 (496)
Q Consensus       304 a~~~~p~ILfIDEI  317 (496)
                      +....|.+++||+.
T Consensus       182 a~~~~~dvvIiDtp  195 (306)
T 1vma_A          182 ALARNKDVVIIDTA  195 (306)
T ss_dssp             HHHTTCSEEEEEEC
T ss_pred             HHhcCCCEEEEECC
Confidence            55567789999977

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.98  E-value=0.00038  Score=65.45  Aligned_cols=31  Identities=26%  Similarity=0.507  Sum_probs=27.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      ..++|.|+||+||||+++.+++.++.+++..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   35 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT   35 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence            5689999999999999999999999876654

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.97  E-value=0.00032  Score=71.52  Aligned_cols=53  Identities=15%  Similarity=0.246  Sum_probs=37.5

Q ss_pred             cchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          220 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       220 G~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      ..+.+.+.+.+.+...+...        ...+++|.||||+||||+++++|..++.+|+.+
T Consensus         3 ~~~~L~~~il~~l~~~i~~g--------~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l   55 (359)
T 2ga8_A            3 DTHKLADDVLQLLDNRIEDN--------YRVCVILVGSPGSGKSTIAEELCQIINEKYHTF   55 (359)
T ss_dssp             CHHHHHHHHHHHHHHTTTTC--------SCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhccC--------CeeEEEEECCCCCcHHHHHHHHHHHhCCCeeee
Confidence            44555566555554332211        124699999999999999999999999988653

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.96  E-value=0.00037  Score=63.30  Aligned_cols=25  Identities=24%  Similarity=0.438  Sum_probs=23.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      .-++|.|+||+||||+++.++..++
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999987

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.96  E-value=0.00061  Score=67.41  Aligned_cols=37  Identities=32%  Similarity=0.435  Sum_probs=29.9

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV  285 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l  285 (496)
                      +..++|.||||+||||+++.++.+++..++.+++..+
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~   69 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF   69 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence            4568999999999999999999988555666665444

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.93  E-value=0.002  Score=67.54  Aligned_cols=70  Identities=19%  Similarity=0.135  Sum_probs=47.5

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccc-------------------cc-cCChHHHHHHHHHHh
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS-------------------KW-RGDSEKLIKVLFELA  304 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~-------------------~~-~G~~e~~l~~lf~~a  304 (496)
                      ++.-+++.|++|+||||++..+|..+   |..+..+++.....                   .. .......+...++.+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            45679999999999999999999876   55555555432211                   01 122344456667777


Q ss_pred             hhcCCcceehhhH
Q 010975          305 RHHAPSTIFLDEI  317 (496)
Q Consensus       305 ~~~~p~ILfIDEI  317 (496)
                      ....+.+++||..
T Consensus       179 ~~~~~DvVIIDTa  191 (443)
T 3dm5_A          179 KSKGVDIIIVDTA  191 (443)
T ss_dssp             HHTTCSEEEEECC
T ss_pred             HhCCCCEEEEECC
Confidence            7766789999976

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.93  E-value=0.00033  Score=85.13  Aligned_cols=78  Identities=22%  Similarity=0.255  Sum_probs=53.0

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccc----cC--------ChHHHHHHHHHHhhh---
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----RG--------DSEKLIKVLFELARH---  306 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~----~G--------~~e~~l~~lf~~a~~---  306 (496)
                      ++.+...++|.|+||+|||+||..+|..+   +.++++++..+.....    .|        ..+..+..+++.++.   
T Consensus       728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~  807 (2050)
T 3cmu_A          728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR  807 (2050)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred             CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence            35566779999999999999999999877   4468888775544332    11        011123333333332   


Q ss_pred             -cCCcceehhhHHHHHh
Q 010975          307 -HAPSTIFLDEIDAIIS  322 (496)
Q Consensus       307 -~~p~ILfIDEID~L~~  322 (496)
                       ..|++|+||.++.+..
T Consensus       808 ~~~~~LVIIDsLq~i~~  824 (2050)
T 3cmu_A          808 SGAVDVIVVDSVAALTP  824 (2050)
T ss_dssp             HTCCSEEEESCGGGCCC
T ss_pred             ccCCCEEEEcchhhhcc
Confidence             5789999999998864

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.93  E-value=0.0012  Score=62.38  Aligned_cols=36  Identities=25%  Similarity=0.368  Sum_probs=26.4

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeee
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS  281 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~  281 (496)
                      +.+..-++|+||||+|||+++..++...   +.+++.++
T Consensus        20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~   58 (247)
T 2dr3_A           20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA   58 (247)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            3455678999999999999998887654   44444443

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.92  E-value=0.00048  Score=63.74  Aligned_cols=31  Identities=29%  Similarity=0.603  Sum_probs=27.2

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      .-++|.|+||+||||+++.++..+|..++..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~   49 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEG   49 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence            4689999999999999999999998776653

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.89  E-value=0.00045  Score=63.30  Aligned_cols=31  Identities=26%  Similarity=0.441  Sum_probs=27.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      .-++|.|+||+||||+++.+++.++.+++..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~   43 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST   43 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence            4689999999999999999999998766654

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.89  E-value=0.00041  Score=62.77  Aligned_cols=29  Identities=31%  Similarity=0.402  Sum_probs=22.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFF  278 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i  278 (496)
                      ..++|.|+||+||||+++.+++.++.+++
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i   34 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHERLPGSFV   34 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence            46899999999999999999999998877

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.88  E-value=0.00045  Score=61.63  Aligned_cols=30  Identities=20%  Similarity=0.433  Sum_probs=26.7

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      .++|.|+||+||||+++.+++.++.+++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~   31 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV   31 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence            478999999999999999999999877653

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.88  E-value=0.00049  Score=62.47  Aligned_cols=31  Identities=16%  Similarity=0.385  Sum_probs=27.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      ..++|.|+||+||||+++.+++.++.+++..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~   37 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA   37 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence            4689999999999999999999998776654

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.87  E-value=0.00044  Score=64.67  Aligned_cols=30  Identities=20%  Similarity=0.453  Sum_probs=26.3

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      .++|.||||+||||+++.+++.++.+++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~   31 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST   31 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence            378999999999999999999998776654

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.87  E-value=0.00046  Score=65.28  Aligned_cols=31  Identities=19%  Similarity=0.455  Sum_probs=27.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      ..++|.|+||+||||+++.+++.++.+++.+
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   38 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS   38 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence            5689999999999999999999998877654

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.86  E-value=0.00065  Score=61.20  Aligned_cols=30  Identities=30%  Similarity=0.553  Sum_probs=26.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      ..++|.||||+||||+++.++..+|..++.
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~   38 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLD   38 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence            468999999999999999999988766554

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.86  E-value=0.00056  Score=65.06  Aligned_cols=31  Identities=29%  Similarity=0.467  Sum_probs=27.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      ..++|.|+||+||||+++.|++.++.+++..
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   47 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT   47 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence            4699999999999999999999999776654

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.85  E-value=0.00087  Score=68.48  Aligned_cols=77  Identities=26%  Similarity=0.341  Sum_probs=48.9

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccc----cC-----------ChHHHHHHHHH-Hhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----RG-----------DSEKLIKVLFE-LARH  306 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~----~G-----------~~e~~l~~lf~-~a~~  306 (496)
                      +++..-++|+||||+|||++|..++...   +.+++.++........    .|           .....+..++. .++.
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~  139 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS  139 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence            4455679999999999999999998765   5567777763321110    00           11122233332 2234


Q ss_pred             cCCcceehhhHHHHHh
Q 010975          307 HAPSTIFLDEIDAIIS  322 (496)
Q Consensus       307 ~~p~ILfIDEID~L~~  322 (496)
                      ..+.+|+||.+..+..
T Consensus       140 ~~~~lVVIDsl~~l~~  155 (356)
T 1u94_A          140 GAVDVIVVDSVAALTP  155 (356)
T ss_dssp             TCCSEEEEECGGGCCC
T ss_pred             cCCCEEEEcCHHHhcc
Confidence            5678999999988753

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.85  E-value=0.00047  Score=64.38  Aligned_cols=30  Identities=27%  Similarity=0.507  Sum_probs=26.3

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      .++|.||||+||||+++.+++.++.+++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~   31 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST   31 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence            378999999999999999999998776654

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.85  E-value=0.00043  Score=65.16  Aligned_cols=31  Identities=16%  Similarity=0.366  Sum_probs=27.2

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      ..++|.||||+||||+++.+|+.++..++.+
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~   36 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTKYQLAHISA   36 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence            5689999999999999999999999766543

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.83  E-value=0.00055  Score=68.46  Aligned_cols=27  Identities=22%  Similarity=0.228  Sum_probs=23.1

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      +++..-++|+||||+|||+++..++..
T Consensus        95 l~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           95 LESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            455566999999999999999999864

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.83  E-value=0.0006  Score=62.99  Aligned_cols=32  Identities=19%  Similarity=0.404  Sum_probs=27.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      .-++|.|+||+||||+++.+++.++.+++..+
T Consensus        16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d   47 (203)
T 1ukz_A           16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG   47 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence            46899999999999999999999988766543

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.82  E-value=0.00062  Score=65.43  Aligned_cols=32  Identities=16%  Similarity=0.252  Sum_probs=27.8

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      +..++|.||||+||||+++.+++.++.+++.+
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~   60 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST   60 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence            45799999999999999999999998766654

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.81  E-value=0.0043  Score=58.53  Aligned_cols=37  Identities=24%  Similarity=0.209  Sum_probs=27.1

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh----cceeeeee
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNIS  281 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~  281 (496)
                      ++++..-++|+|+||+|||++|..+|...    +.+++.++
T Consensus        26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s   66 (251)
T 2zts_A           26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT   66 (251)
T ss_dssp             SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence            34555679999999999999998876542    45555554

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.81  E-value=0.00042  Score=71.97  Aligned_cols=25  Identities=32%  Similarity=0.339  Sum_probs=21.2

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHH
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVA  270 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA  270 (496)
                      +.+..-++|+||||+|||+|++.++
T Consensus       175 I~~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          175 VETGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCChHHHHHHHH
Confidence            4555669999999999999999776

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.80  E-value=0.00065  Score=69.16  Aligned_cols=38  Identities=26%  Similarity=0.321  Sum_probs=29.4

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeecc
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISAS  283 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s  283 (496)
                      +.+..-+.|+||||+|||+|++.++...         +..+++++..
T Consensus       128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e  174 (349)
T 1pzn_A          128 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE  174 (349)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC
Confidence            4555668999999999999999999876         2355666653

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.79  E-value=0.00062  Score=64.03  Aligned_cols=31  Identities=23%  Similarity=0.500  Sum_probs=27.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      ..++|.|+||+||||+++.+++.++.+++.+
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   36 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST   36 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence            4689999999999999999999999877655

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.78  E-value=0.00065  Score=68.07  Aligned_cols=37  Identities=27%  Similarity=0.483  Sum_probs=31.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV  286 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~  286 (496)
                      +-++|.||+|+|||+|+..+|+.++..++..+...+.
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY   47 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKILPVELISVDSALIY   47 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTB
T ss_pred             cEEEEECCCccCHHHHHHHHHHhCCCcEEeccccccc
Confidence            4588999999999999999999999888887765443

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.72  E-value=0.00085  Score=63.81  Aligned_cols=38  Identities=21%  Similarity=0.405  Sum_probs=29.7

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV  286 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~  286 (496)
                      ..++-++|.||||+||+|.|+.|++.+|.+.+  +.+++.
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI--stGdll   64 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL--SSGDLL   64 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE--CHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHCCceE--cHHHHH
Confidence            34467889999999999999999999986554  444443

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.72  E-value=0.00095  Score=61.84  Aligned_cols=30  Identities=33%  Similarity=0.540  Sum_probs=25.7

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFF  278 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i  278 (496)
                      +..+.|.||+|+||||+++.++..+|..++
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i   58 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVADETGLEFA   58 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence            356889999999999999999999876544

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.71  E-value=0.0026  Score=57.56  Aligned_cols=22  Identities=32%  Similarity=0.543  Sum_probs=18.4

Q ss_pred             ccceeeeeCCCCChhHHHHHHH
Q 010975          248 PWKGILLFGPPGTGKTMLAKAV  269 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAral  269 (496)
                      ++.-+.|.||+|+||||+++.+
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHH
Confidence            3456899999999999999953

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=96.71  E-value=0.00062  Score=73.93  Aligned_cols=31  Identities=35%  Similarity=0.368  Sum_probs=25.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh---cceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v  280 (496)
                      ..++|.||||||||+++.+++..+   +.++..+
T Consensus       205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~  238 (574)
T 3e1s_A          205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC  238 (574)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence            568999999999999999998866   4455444

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=96.67  E-value=0.0034  Score=67.82  Aligned_cols=74  Identities=12%  Similarity=0.238  Sum_probs=49.3

Q ss_pred             cceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc--cccHHHHHHhhhhhcccCCCHH
Q 010975          310 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRILVPLPDTE  387 (496)
Q Consensus       310 ~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~--~Ld~aL~rRf~~~I~~~~P~~e  387 (496)
                      -+|+|||++.+.....         +.+...+.....  ..+.-.+.+|.+|.+|.  .++..++.-|...|.+...+..
T Consensus       345 ivvVIDE~~~L~~~~~---------~~~~~~L~~Iar--~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~  413 (574)
T 2iut_A          345 IVVVVDEFADMMMIVG---------KKVEELIARIAQ--KARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKI  413 (574)
T ss_dssp             EEEEESCCTTHHHHTC---------HHHHHHHHHHHH--HCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHH
T ss_pred             EEEEEeCHHHHhhhhh---------HHHHHHHHHHHH--HHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHH
Confidence            4899999998865321         111111212111  12333466777888886  7999999989888999999988


Q ss_pred             HHHHHHH
Q 010975          388 ARRAMFE  394 (496)
Q Consensus       388 eR~~Il~  394 (496)
                      +...++-
T Consensus       414 Dsr~ILd  420 (574)
T 2iut_A          414 DSRTILD  420 (574)
T ss_dssp             HHHHHHS
T ss_pred             HHHHhcC
Confidence            8887774

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=96.65  E-value=0.0034  Score=58.69  Aligned_cols=114  Identities=12%  Similarity=0.117  Sum_probs=63.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec--c-------cccccc-----------c--CC----hHHHHHHH
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA--S-------SVVSKW-----------R--GD----SEKLIKVL  300 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~--s-------~l~~~~-----------~--G~----~e~~l~~l  300 (496)
                      ..+++++++|.||||+|-++|-..   |.++..+..  +       .+....           .  ..    ........
T Consensus        29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~  108 (196)
T 1g5t_A           29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV  108 (196)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence            358899999999999999998876   555554421  1       111111           0  00    01223334


Q ss_pred             HHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhh
Q 010975          301 FELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLE  376 (496)
Q Consensus       301 f~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~  376 (496)
                      +..++.    ....+|+|||+.....-.--  .        .+.++..+.   .++..+-||.|+|.+   ++.|...-+
T Consensus       109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l--~--------~~ev~~~l~---~Rp~~~~vIlTGr~a---p~~l~e~AD  172 (196)
T 1g5t_A          109 WQHGKRMLADPLLDMVVLDELTYMVAYDYL--P--------LEEVISALN---ARPGHQTVIITGRGC---HRDILDLAD  172 (196)
T ss_dssp             HHHHHHHTTCTTCSEEEEETHHHHHHTTSS--C--------HHHHHHHHH---TSCTTCEEEEECSSC---CHHHHHHCS
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCccccCCCC--C--------HHHHHHHHH---hCcCCCEEEEECCCC---cHHHHHhCc
Confidence            444433    45789999999775432110  0        123444444   334445567788875   566666555


Q ss_pred             hhh
Q 010975          377 KRI  379 (496)
Q Consensus       377 ~~I  379 (496)
                      .+-
T Consensus       173 ~VT  175 (196)
T 1g5t_A          173 TVS  175 (196)
T ss_dssp             EEE
T ss_pred             cee
Confidence            433

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.63  E-value=0.00077  Score=63.07  Aligned_cols=30  Identities=23%  Similarity=0.355  Sum_probs=26.5

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      .++|.|+||+||||+++.+++.++.+++.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~   31 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST   31 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence            378999999999999999999998776654

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.63  E-value=0.00084  Score=60.88  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=22.5

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhc
Q 010975          251 GILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      -++|.|+||+||||+++.+++.++
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999886

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.63  E-value=0.0014  Score=66.84  Aligned_cols=68  Identities=19%  Similarity=0.242  Sum_probs=42.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc----ceeeeeec-ccc--------c-ccccCChHHHHHHHHHHhhhcCCcceehh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK----TTFFNISA-SSV--------V-SKWRGDSEKLIKVLFELARHHAPSTIFLD  315 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~----~~~i~v~~-s~l--------~-~~~~G~~e~~l~~lf~~a~~~~p~ILfID  315 (496)
                      ..+++.||+|+||||+.++++..+.    ..++.+.- .++        . ....+.........+..+-...|.+|++|
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD  203 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG  203 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence            4589999999999999999998763    33332211 111        0 01111111223446666667889999999


Q ss_pred             hH
Q 010975          316 EI  317 (496)
Q Consensus       316 EI  317 (496)
                      |+
T Consensus       204 Ep  205 (356)
T 3jvv_A          204 EM  205 (356)
T ss_dssp             CC
T ss_pred             CC
Confidence            99

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.61  E-value=0.0014  Score=60.32  Aligned_cols=32  Identities=19%  Similarity=0.169  Sum_probs=27.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh-cceeeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC-KTTFFNIS  281 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l-~~~~i~v~  281 (496)
                      .-++|.|+||+||||+++.+++.+ |.+++.++
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~   37 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN   37 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence            568999999999999999999998 57776554

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.61  E-value=0.0012  Score=60.05  Aligned_cols=31  Identities=26%  Similarity=0.074  Sum_probs=27.0

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhh---cceeeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATEC---KTTFFNIS  281 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~  281 (496)
                      -++|.|+||+||||+++.+++.+   |.+++..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d   35 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR   35 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            37899999999999999999988   77777654

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.60  E-value=0.0012  Score=64.00  Aligned_cols=36  Identities=25%  Similarity=0.397  Sum_probs=29.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh---hcceeeeeecccc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE---CKTTFFNISASSV  285 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~---l~~~~i~v~~s~l  285 (496)
                      .-++|.|+||+||||+++.++..   .|.+++.++...+
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~   43 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI   43 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence            46899999999999999999998   6777775555444

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=96.60  E-value=0.0083  Score=64.08  Aligned_cols=74  Identities=15%  Similarity=0.275  Sum_probs=47.7

Q ss_pred             ceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc--cccHHHHHHhhhhhcccCCCHHH
Q 010975          311 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRILVPLPDTEA  388 (496)
Q Consensus       311 ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~--~Ld~aL~rRf~~~I~~~~P~~ee  388 (496)
                      +|+|||...+.....      .....++..+...     .+.-.+.+|.+|.+|.  .++..++..|...|.+...+..+
T Consensus       300 vlvIDE~~~ll~~~~------~~~~~~l~~Lar~-----gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~d  368 (512)
T 2ius_A          300 VVLVDEFADLMMTVG------KKVEELIARLAQK-----ARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKID  368 (512)
T ss_dssp             EEEEETHHHHHHHHH------HHHHHHHHHHHHH-----CGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHH
T ss_pred             EEEEeCHHHHHhhhh------HHHHHHHHHHHHH-----hhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHH
Confidence            899999988764210      1111122222111     1222355667788875  58888999998889999999999


Q ss_pred             HHHHHHh
Q 010975          389 RRAMFES  395 (496)
Q Consensus       389 R~~Il~~  395 (496)
                      ...++..
T Consensus       369 sr~ilg~  375 (512)
T 2ius_A          369 SRTILDQ  375 (512)
T ss_dssp             HHHHHSS
T ss_pred             HHHhcCC
Confidence            9888764

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.60  E-value=0.0011  Score=64.66  Aligned_cols=68  Identities=22%  Similarity=0.341  Sum_probs=41.3

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhc----ceeeeeecccc----------cc-cccCChHHHHHHHHHHhhhcCCccee
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASSV----------VS-KWRGDSEKLIKVLFELARHHAPSTIF  313 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~----~~~i~v~~s~l----------~~-~~~G~~e~~l~~lf~~a~~~~p~ILf  313 (496)
                      ...++|.||+|+||||++++++..+.    ..++ +....+          .. ...|.....++..+..+-...|.+|+
T Consensus        25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~-~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~ill  103 (261)
T 2eyu_A           25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHII-TIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF  103 (261)
T ss_dssp             SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE-EEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEE-EcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEE
Confidence            35689999999999999999998663    2222 111110          00 01111112234555555556889999


Q ss_pred             hhhH
Q 010975          314 LDEI  317 (496)
Q Consensus       314 IDEI  317 (496)
                      +||.
T Consensus       104 lDEp  107 (261)
T 2eyu_A          104 VGEM  107 (261)
T ss_dssp             ESCC
T ss_pred             eCCC
Confidence            9998

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.60  E-value=0.0011  Score=60.76  Aligned_cols=29  Identities=24%  Similarity=0.547  Sum_probs=26.0

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      .++|.|+||+||||+++.+++.++..++.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~   30 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGYEIFK   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence            47899999999999999999999987664

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.58  E-value=0.0014  Score=59.24  Aligned_cols=35  Identities=20%  Similarity=0.322  Sum_probs=30.0

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS  284 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~  284 (496)
                      ..+.|.|++|+||||+++.++..+   |.+++.++...
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~   43 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN   43 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence            468899999999999999999988   88888776543

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.57  E-value=0.012  Score=61.53  Aligned_cols=70  Identities=19%  Similarity=0.129  Sum_probs=45.1

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccc----------c------c---cC-ChHHHHHHHHHHh
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----------K------W---RG-DSEKLIKVLFELA  304 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~----------~------~---~G-~~e~~l~~lf~~a  304 (496)
                      ++.-+++.||+|+||||++..+|..+   |.++..+++.....          .      +   .+ .........+..+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            45678999999999999999999877   55555544321110          0      0   01 1223344556666


Q ss_pred             hhcCCcceehhhH
Q 010975          305 RHHAPSTIFLDEI  317 (496)
Q Consensus       305 ~~~~p~ILfIDEI  317 (496)
                      ....+.+++||..
T Consensus       176 ~~~~~DvvIIDTa  188 (433)
T 3kl4_A          176 VKNKMDIIIVDTA  188 (433)
T ss_dssp             TTTTCSEEEEEEC
T ss_pred             HhcCCCEEEEECC
Confidence            6567789999977

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.57  E-value=0.0011  Score=62.39  Aligned_cols=33  Identities=33%  Similarity=0.547  Sum_probs=27.0

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSV  285 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l  285 (496)
                      .++|.||||+||+|.|+.|++.+|.+.+  +.+++
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdl   34 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDI   34 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHH
Confidence            3788999999999999999999987654  44444

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.55  E-value=0.0012  Score=63.12  Aligned_cols=30  Identities=23%  Similarity=0.537  Sum_probs=25.8

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFF  278 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i  278 (496)
                      +..++|.||||+||||+++.|++.+|...+
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~   56 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL   56 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence            457999999999999999999998876543

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.54  E-value=0.0011  Score=62.68  Aligned_cols=30  Identities=30%  Similarity=0.548  Sum_probs=25.9

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      .++|.|+||+||||+++.+++.++.+++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~   31 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES   31 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence            378999999999999999999998765543

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.50  E-value=0.0015  Score=60.49  Aligned_cols=37  Identities=24%  Similarity=0.255  Sum_probs=28.1

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccc
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV  285 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l  285 (496)
                      +.-+.|.||+|+||||+++.++..+   |...+.++...+
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~   64 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV   64 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence            3568899999999999999999988   443345554333

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.48  E-value=0.0012  Score=60.98  Aligned_cols=30  Identities=23%  Similarity=0.277  Sum_probs=26.2

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      .+.|.|++|+||||+++.++. +|.+++..+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d   32 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD   32 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence            478999999999999999999 887776654

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.45  E-value=0.0016  Score=61.04  Aligned_cols=30  Identities=33%  Similarity=0.483  Sum_probs=26.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      ..+.|.||+|+||||+++.++..+|.+++.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d   35 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD   35 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence            358899999999999999999999876654

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.45  E-value=0.001  Score=66.76  Aligned_cols=37  Identities=22%  Similarity=0.269  Sum_probs=31.0

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV  286 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~  286 (496)
                      +-++|.||+|+|||+|+..+|+.++..++..+.-.+.
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvY   40 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVY   40 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGB
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccce
Confidence            3578999999999999999999999888777655443

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.44  E-value=0.0077  Score=59.77  Aligned_cols=35  Identities=31%  Similarity=0.373  Sum_probs=27.2

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeec
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA  282 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~  282 (496)
                      ++..++|.||+|+||||++..+|..+    |..+..+++
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~  142 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT  142 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence            44678999999999999999999765    445555544

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.44  E-value=0.0011  Score=61.45  Aligned_cols=31  Identities=23%  Similarity=0.228  Sum_probs=26.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      .-++|.|+||+||||+++.+++.++.+.+.+
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~   41 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV   41 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence            5689999999999999999999987654443

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.39  E-value=0.0019  Score=65.45  Aligned_cols=34  Identities=29%  Similarity=0.409  Sum_probs=29.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS  283 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s  283 (496)
                      +-++|.||+|+|||+|+..||+.++..++..+.-
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~   74 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM   74 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence            4689999999999999999999999888776543

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.36  E-value=0.0013  Score=60.94  Aligned_cols=29  Identities=17%  Similarity=0.125  Sum_probs=24.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFF  278 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i  278 (496)
                      .-++|.|+||+||||+++.+++.++...+
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~   38 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVEALCAAGH   38 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            56899999999999999999998865433

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.35  E-value=0.0022  Score=77.11  Aligned_cols=78  Identities=23%  Similarity=0.272  Sum_probs=50.6

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccc----cccCC--------hHHHHHHHHHHh----h
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----KWRGD--------SEKLIKVLFELA----R  305 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~----~~~G~--------~e~~l~~lf~~a----~  305 (496)
                      ++.+...++|+||||+|||+||..+|...   +.++..++..+...    ...|.        .+..+..+++.+    +
T Consensus       728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~  807 (1706)
T 3cmw_A          728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR  807 (1706)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred             CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence            35566779999999999999999998876   44677766543321    11110        001122333333    3


Q ss_pred             hcCCcceehhhHHHHHh
Q 010975          306 HHAPSTIFLDEIDAIIS  322 (496)
Q Consensus       306 ~~~p~ILfIDEID~L~~  322 (496)
                      ...|.+|+||.+..+.+
T Consensus       808 ~~~~~lVVIDsLq~l~~  824 (1706)
T 3cmw_A          808 SGAVDVIVVDSVAALTP  824 (1706)
T ss_dssp             HTCCSEEEESCSTTCCC
T ss_pred             ccCCCEEEEechhhhcc
Confidence            46789999999998863

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.34  E-value=0.0018  Score=62.92  Aligned_cols=32  Identities=34%  Similarity=0.559  Sum_probs=28.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      ..+.|.|++|+||||+++.+|..++.+++..+
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d   80 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD   80 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence            57999999999999999999999998877653

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.34  E-value=0.0018  Score=65.06  Aligned_cols=76  Identities=12%  Similarity=0.155  Sum_probs=47.4

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeeccccccc----cc------------CChHHHHHHHHHH-
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSK----WR------------GDSEKLIKVLFEL-  303 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~s~l~~~----~~------------G~~e~~l~~lf~~-  303 (496)
                      +.+. -++|+||||+|||+|+-.++...     +..+++++..+-...    ..            ...+.....+.+. 
T Consensus        26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l  104 (333)
T 3io5_A           26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL  104 (333)
T ss_dssp             BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred             CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence            3444 58999999999999988877654     456777776432210    00            1122220222222 


Q ss_pred             --hhhcCCcceehhhHHHHHh
Q 010975          304 --ARHHAPSTIFLDEIDAIIS  322 (496)
Q Consensus       304 --a~~~~p~ILfIDEID~L~~  322 (496)
                        .+...|.+|+||-|..+.+
T Consensus       105 ~~i~~~~~~lvVIDSI~aL~~  125 (333)
T 3io5_A          105 DAIERGEKVVVFIDSLGNLAS  125 (333)
T ss_dssp             HTCCTTCCEEEEEECSTTCBC
T ss_pred             HHhhccCceEEEEeccccccc
Confidence              3556789999999988864

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.32  E-value=0.0018  Score=59.60  Aligned_cols=26  Identities=23%  Similarity=0.152  Sum_probs=23.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKT  275 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~  275 (496)
                      .-++|.|+||+||||+++.+++.++.
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            46899999999999999999998876

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.30  E-value=0.002  Score=61.66  Aligned_cols=32  Identities=22%  Similarity=0.189  Sum_probs=25.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh---cceeeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS  281 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~  281 (496)
                      -.+++.|+||+||||++-.+|..+   |..++.++
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d   41 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV   41 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence            359999999999999999998876   55554443

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.30  E-value=0.0018  Score=60.00  Aligned_cols=29  Identities=24%  Similarity=0.285  Sum_probs=24.9

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      .+.|.||+|+||||+++.++. +|.+++..
T Consensus         4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~   32 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA   32 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence            478999999999999999998 78776643

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.30  E-value=0.0018  Score=59.62  Aligned_cols=31  Identities=23%  Similarity=0.419  Sum_probs=27.3

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      .+.|.|++|+||||+++.++..+|.+++..+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d   34 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG   34 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence            5889999999999999999999997776543

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.27  E-value=0.002  Score=59.76  Aligned_cols=24  Identities=42%  Similarity=0.696  Sum_probs=21.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.|+|.||+|+|||||++.+..+.
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            458999999999999999998775

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.27  E-value=0.002  Score=59.00  Aligned_cols=31  Identities=19%  Similarity=0.171  Sum_probs=26.4

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      +..+.|.|++|+||||+++.+++. |.+++..
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~   38 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDL   38 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence            356899999999999999999998 7766644

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.22  E-value=0.0022  Score=59.64  Aligned_cols=31  Identities=23%  Similarity=0.337  Sum_probs=27.1

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      .+.|+|++|+||||+++.+++.+|.+++..+
T Consensus        14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D   44 (192)
T 2grj_A           14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD   44 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence            4789999999999999999999888776644

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.18  E-value=0.003  Score=60.68  Aligned_cols=30  Identities=23%  Similarity=0.495  Sum_probs=26.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      ..+.|.||||+||||+++.+++.++.+++.
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d   39 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLARALGARYLD   39 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence            468999999999999999999999876654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.18  E-value=0.0028  Score=58.68  Aligned_cols=33  Identities=24%  Similarity=0.195  Sum_probs=27.1

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh-cceeeeee
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC-KTTFFNIS  281 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l-~~~~i~v~  281 (496)
                      +.-+.|.|++|+||||+++.++..+ +..++..+
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D   54 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD   54 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence            3458899999999999999999988 66665544

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.17  E-value=0.0075  Score=62.69  Aligned_cols=32  Identities=19%  Similarity=0.247  Sum_probs=27.1

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      +.-++|+|+||+||||+++.++..++..++..
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~  289 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR  289 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGGGTCEECCG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhcCcEEEcc
Confidence            45688999999999999999999988666543

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.16  E-value=0.0035  Score=57.06  Aligned_cols=34  Identities=26%  Similarity=0.279  Sum_probs=26.8

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhc---ceeeeeec
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA  282 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~  282 (496)
                      +..++|.|+||+||||+++.++..++   .++..++.
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~   49 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG   49 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence            35689999999999999999999884   33444543

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.15  E-value=0.002  Score=66.03  Aligned_cols=69  Identities=23%  Similarity=0.341  Sum_probs=41.7

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhc----ceeeeeecc-cc--------ccc-ccCChHHHHHHHHHHhhhcCCcceeh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECK----TTFFNISAS-SV--------VSK-WRGDSEKLIKVLFELARHHAPSTIFL  314 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~----~~~i~v~~s-~l--------~~~-~~G~~e~~l~~lf~~a~~~~p~ILfI  314 (496)
                      ...++|.||+|+||||++++++..+.    ..++.+... ++        ... ..|.....+...+..+-...|.+|++
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~ill  215 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFV  215 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEEE
Confidence            35689999999999999999998763    233222210 00        000 01111112344455555568999999


Q ss_pred             hhH
Q 010975          315 DEI  317 (496)
Q Consensus       315 DEI  317 (496)
                      ||+
T Consensus       216 dE~  218 (372)
T 2ewv_A          216 GEM  218 (372)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            998

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.13  E-value=0.0019  Score=65.13  Aligned_cols=70  Identities=19%  Similarity=0.233  Sum_probs=44.3

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhc--ceeeeeeccc-cc-----cc--ccCChHHHHHHHHHHhhhcCCcceehhhHH
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASS-VV-----SK--WRGDSEKLIKVLFELARHHAPSTIFLDEID  318 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~--~~~i~v~~s~-l~-----~~--~~G~~e~~l~~lf~~a~~~~p~ILfIDEID  318 (496)
                      ...++|.||+|+||||++++++....  ...+.++... +.     ..  +........+..+..+-...|.+|++||.-
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~  250 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR  250 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence            35799999999999999999999773  2233333221 10     00  110011234455566666789999999983

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.12  E-value=0.001  Score=69.00  Aligned_cols=33  Identities=27%  Similarity=0.421  Sum_probs=28.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA  282 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~  282 (496)
                      +-++|.||+|+|||+|+..+|..++..++..+.
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds   35 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS   35 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence            457899999999999999999999887766554

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.09  E-value=0.0028  Score=58.76  Aligned_cols=27  Identities=33%  Similarity=0.518  Sum_probs=23.7

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      ++.-++|.||||+||||+++.++..++
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            345689999999999999999999874

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=96.08  E-value=0.0036  Score=59.81  Aligned_cols=33  Identities=30%  Similarity=0.311  Sum_probs=26.9

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA  282 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~  282 (496)
                      +.++++||+|+|||.++..++...+.+++.+..
T Consensus       109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P  141 (237)
T 2fz4_A          109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVP  141 (237)
T ss_dssp             SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred             CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence            358999999999999999998888666655543

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.04  E-value=0.0046  Score=59.39  Aligned_cols=37  Identities=16%  Similarity=0.071  Sum_probs=29.9

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhccee--------eeeeccccc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTF--------FNISASSVV  286 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~--------i~v~~s~l~  286 (496)
                      .-|.|.|++|+||||+++.++..++.++        ..++..++.
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~   67 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY   67 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence            4588999999999999999999998763        356665554

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.00  E-value=0.0043  Score=59.81  Aligned_cols=30  Identities=33%  Similarity=0.470  Sum_probs=26.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      ..+.|.||+|+||||+++.+++.+|..++.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d   57 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALAESLNWRLLD   57 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence            458899999999999999999999876653

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.99  E-value=0.0032  Score=61.82  Aligned_cols=32  Identities=31%  Similarity=0.362  Sum_probs=26.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh-cceeeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC-KTTFFNIS  281 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l-~~~~i~v~  281 (496)
                      .-++|.|+||+||||+++.+++.+ +..++..+
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D   35 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRD   35 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc
Confidence            458999999999999999999974 66655443

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.99  E-value=0.0038  Score=58.26  Aligned_cols=30  Identities=27%  Similarity=0.313  Sum_probs=26.0

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      .-+.|.|++|+||||+++.++. +|.+++..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~   34 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA   34 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence            4688999999999999999998 88776654

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=95.98  E-value=0.0034  Score=57.67  Aligned_cols=25  Identities=32%  Similarity=0.400  Sum_probs=22.5

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.-+.|.||+|+||||+++.++..+
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3568899999999999999999977

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.94  E-value=0.0041  Score=58.00  Aligned_cols=36  Identities=19%  Similarity=0.261  Sum_probs=28.4

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhc----ceeeeeeccc
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASS  284 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~----~~~i~v~~s~  284 (496)
                      +..++|.|+||+||||+++.++..++    .+++.++...
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~   64 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN   64 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence            35688999999999999999999875    4466665433

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.91  E-value=0.0077  Score=63.22  Aligned_cols=37  Identities=22%  Similarity=0.238  Sum_probs=28.4

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeec
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA  282 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~  282 (496)
                      +.+..-++|.|+||+|||+++..+|...    |.+++.++.
T Consensus       200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~  240 (454)
T 2r6a_A          200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL  240 (454)
T ss_dssp             BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence            4555669999999999999999998865    445665553

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.91  E-value=0.004  Score=58.05  Aligned_cols=32  Identities=34%  Similarity=0.524  Sum_probs=27.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      ..+.|.|++|+|||++++.++..+|.+++..+
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d   35 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG   35 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence            35889999999999999999999998776543

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.88  E-value=0.005  Score=57.79  Aligned_cols=36  Identities=22%  Similarity=0.296  Sum_probs=29.4

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV  285 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l  285 (496)
                      .++++|.||+|+|||++|..+++..+ +++..+...+
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v   69 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDV   69 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhe
Confidence            46799999999999999999999876 6666554433

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=95.87  E-value=0.0045  Score=56.38  Aligned_cols=25  Identities=28%  Similarity=0.506  Sum_probs=21.8

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcc
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKT  275 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~  275 (496)
                      -++|.||+|+||||+++.++...+.
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~~~~g   28 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAAQLDN   28 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcccCC
Confidence            4789999999999999999986643

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.86  E-value=0.0046  Score=58.71  Aligned_cols=32  Identities=28%  Similarity=0.455  Sum_probs=27.5

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      +..+.|.|++|+||||+++.++..+|.+++..
T Consensus        16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~   47 (236)
T 1q3t_A           16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDT   47 (236)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence            34688999999999999999999999776643

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=95.85  E-value=0.0043  Score=57.90  Aligned_cols=26  Identities=35%  Similarity=0.419  Sum_probs=23.0

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      +.-+.|.||+|+||||+++.++..+.
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            34588999999999999999999874

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.85  E-value=0.0045  Score=62.77  Aligned_cols=33  Identities=27%  Similarity=0.370  Sum_probs=28.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA  282 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~  282 (496)
                      .-++|.||+|+|||++|+.||..++..++..+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds   40 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS   40 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence            358899999999999999999999877666553

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=95.81  E-value=0.015  Score=66.43  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.2

Q ss_pred             cceeeeeCCCCChhHHHHHHHHh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~  271 (496)
                      ..-++|+||.|+||||+.|.++.
T Consensus       673 g~i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          673 ERVMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             CCEEEEESCCCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCchHHHHHHHHH
Confidence            34589999999999999999875

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=95.80  E-value=0.011  Score=63.40  Aligned_cols=44  Identities=16%  Similarity=0.039  Sum_probs=34.9

Q ss_pred             hcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHh
Q 010975          219 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       219 iG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~  271 (496)
                      +|.+..+++|.+.+...-         ....+.+.|+|+.|+|||+||+.+++
T Consensus       131 ~GR~~~~~~l~~~L~~~~---------~~~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMC---------DLDSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHT---------TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhccc---------CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence            599999999999884321         01235688999999999999999996

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=95.77  E-value=0.0047  Score=56.16  Aligned_cols=25  Identities=24%  Similarity=0.527  Sum_probs=22.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      +-+.|.||+|+|||||++.++....
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4588999999999999999998653

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.75  E-value=0.0062  Score=59.83  Aligned_cols=30  Identities=20%  Similarity=0.258  Sum_probs=25.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      .-|.|+|++|+||||+++.++ .+|.+++..
T Consensus        76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~  105 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDS  105 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence            458999999999999999999 678776554

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=95.69  E-value=0.0068  Score=56.37  Aligned_cols=26  Identities=31%  Similarity=0.533  Sum_probs=23.2

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      +.-+.|.||+|+|||||++.|+..+.
T Consensus        22 g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           22 RQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            34688999999999999999999885

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=95.69  E-value=0.012  Score=67.69  Aligned_cols=44  Identities=27%  Similarity=0.266  Sum_probs=35.1

Q ss_pred             hhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhh
Q 010975          218 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       218 liG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .+|.+..+++|.+.+...           ...+-+.|+||.|+|||+||+.+++.
T Consensus       130 ~VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d  173 (1221)
T 1vt4_I          130 NVSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS  173 (1221)
T ss_dssp             CCCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence            389999999998887431           11256889999999999999999863

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.62  E-value=0.051  Score=57.68  Aligned_cols=27  Identities=30%  Similarity=0.288  Sum_probs=23.5

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ..+.-++|.||+|+||||+++.|+..+
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            445568899999999999999999876

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=95.62  E-value=0.006  Score=55.96  Aligned_cols=25  Identities=28%  Similarity=0.482  Sum_probs=22.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      .-+.|.||+|+||||+++.++....
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhCC
Confidence            4588999999999999999998763

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=95.54  E-value=0.0075  Score=55.80  Aligned_cols=29  Identities=31%  Similarity=0.329  Sum_probs=24.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc--ceee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK--TTFF  278 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~--~~~i  278 (496)
                      .-+.|.||+|+||||+++.++..++  ..++
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v   37 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALARTLGERVALL   37 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHGGGEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence            4588999999999999999999887  4444

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=95.52  E-value=0.012  Score=61.68  Aligned_cols=37  Identities=24%  Similarity=0.208  Sum_probs=28.4

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeec
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA  282 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~  282 (496)
                      +.+..-++|.|+||+|||+++..+|...    +.+++.++.
T Consensus       197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl  237 (444)
T 2q6t_A          197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL  237 (444)
T ss_dssp             CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            4555668999999999999999998754    445665554

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.42  E-value=0.0075  Score=64.47  Aligned_cols=69  Identities=19%  Similarity=0.214  Sum_probs=43.2

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhc--ceeeeeeccc-cccc-----------ccCChHHHHHHHHHHhhhcCCcceeh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASS-VVSK-----------WRGDSEKLIKVLFELARHHAPSTIFL  314 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~--~~~i~v~~s~-l~~~-----------~~G~~e~~l~~lf~~a~~~~p~ILfI  314 (496)
                      +.++++.||+|+||||++++++..+.  ...+.+.... +.-.           ..+.....+...+..+-...|.++++
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv  339 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV  339 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence            35699999999999999999999773  3344443221 1100           00111112344555566678999999


Q ss_pred             hhH
Q 010975          315 DEI  317 (496)
Q Consensus       315 DEI  317 (496)
                      +|+
T Consensus       340 gEi  342 (511)
T 2oap_1          340 GEV  342 (511)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            987

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.40  E-value=0.098  Score=51.74  Aligned_cols=34  Identities=32%  Similarity=0.178  Sum_probs=26.9

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      +.-+++.|++|+||||++..+|..+   +.++..+++
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~  134 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA  134 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence            4568889999999999999999876   555555544

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=95.39  E-value=0.007  Score=56.07  Aligned_cols=25  Identities=36%  Similarity=0.562  Sum_probs=21.8

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ++.+.|.||+|+|||||++.++...
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3568999999999999999999865

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.35  E-value=0.033  Score=59.34  Aligned_cols=35  Identities=26%  Similarity=0.202  Sum_probs=27.1

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      .++.++|.|+||+||||++..+|..+   |.++..+++
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~  137 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA  137 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence            34679999999999999999999776   555655554

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=95.32  E-value=0.0083  Score=55.97  Aligned_cols=29  Identities=21%  Similarity=0.300  Sum_probs=27.1

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      -|.|.|++|+|||++++.+|+.+|.+|+.
T Consensus         8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D   36 (201)
T 3fdi_A            8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS   36 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence            58899999999999999999999999884

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=95.31  E-value=0.0071  Score=56.44  Aligned_cols=33  Identities=21%  Similarity=0.218  Sum_probs=25.6

Q ss_pred             ceeeeeCCCCChhH-HHHHHHHhhh--cceeeeeec
Q 010975          250 KGILLFGPPGTGKT-MLAKAVATEC--KTTFFNISA  282 (496)
Q Consensus       250 ~~vLL~GPpGtGKT-~LAralA~~l--~~~~i~v~~  282 (496)
                      +=.+++||.|+||| .|.+++.+..  +..++.++.
T Consensus        21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp   56 (195)
T 1w4r_A           21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY   56 (195)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence            34789999999999 8999887754  566666653

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=95.27  E-value=0.044  Score=55.11  Aligned_cols=26  Identities=27%  Similarity=0.202  Sum_probs=23.1

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ++.-+.|.||+|+||||+++.+|..+
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            44568999999999999999999876

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=95.25  E-value=0.029  Score=61.51  Aligned_cols=32  Identities=25%  Similarity=0.433  Sum_probs=20.8

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975          251 GILLFGPPGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      -.||+||||||||+++-.+..++   +.++..+..
T Consensus       207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~  241 (646)
T 4b3f_X          207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP  241 (646)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence            46899999999997554444433   445544443

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=95.25  E-value=0.025  Score=51.65  Aligned_cols=17  Identities=35%  Similarity=0.438  Sum_probs=15.0

Q ss_pred             ceeeeeCCCCChhHHHH
Q 010975          250 KGILLFGPPGTGKTMLA  266 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LA  266 (496)
                      +++++.+|+|+|||..+
T Consensus        39 ~~~li~~~TGsGKT~~~   55 (207)
T 2gxq_A           39 KDLIGQARTGTGKTLAF   55 (207)
T ss_dssp             CCEEEECCTTSCHHHHH
T ss_pred             CCEEEECCCCChHHHHH
Confidence            57999999999999863

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=95.17  E-value=0.025  Score=64.59  Aligned_cols=22  Identities=18%  Similarity=0.247  Sum_probs=19.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHh
Q 010975          250 KGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~  271 (496)
                      .-++|+||.|+||||+.|.++.
T Consensus       663 ~i~~ItGpNGsGKSTlLr~ial  684 (934)
T 3thx_A          663 MFHIITGPNMGGKSTYIRQTGV  684 (934)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999999954

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=95.15  E-value=0.016  Score=53.55  Aligned_cols=32  Identities=19%  Similarity=0.150  Sum_probs=25.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh---cceeeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS  281 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~  281 (496)
                      .-+.|.||+|+||||+++.++..+   +.+++.++
T Consensus        23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~   57 (201)
T 1rz3_A           23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH   57 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence            458899999999999999999876   44555443

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=95.07  E-value=0.0061  Score=56.33  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=21.8

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhc
Q 010975          251 GILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      -+.|.|++|+||||+++.++..++
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            378999999999999999999884

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=95.05  E-value=0.035  Score=55.63  Aligned_cols=36  Identities=25%  Similarity=0.229  Sum_probs=28.3

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      .++..+++.||+|+||||++..+|..+   +..+..+++
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~  141 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA  141 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            455678999999999999999999876   455555544

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=95.00  E-value=0.012  Score=54.98  Aligned_cols=25  Identities=24%  Similarity=0.562  Sum_probs=22.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      +-++|.||+|+|||||++.|+....
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CEEEEECcCCCCHHHHHHHHHhhCC
Confidence            4588999999999999999998764

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=94.95  E-value=0.014  Score=52.37  Aligned_cols=25  Identities=28%  Similarity=0.316  Sum_probs=22.4

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ..-+.|.||.|+|||||++.++..+
T Consensus        33 Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           33 AIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhC
Confidence            3458899999999999999999977

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=94.94  E-value=0.012  Score=54.53  Aligned_cols=27  Identities=19%  Similarity=0.377  Sum_probs=23.2

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      +..-+.|.||+|+|||||++.|+..+.
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            334588999999999999999998774

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=94.93  E-value=0.045  Score=54.37  Aligned_cols=27  Identities=26%  Similarity=0.240  Sum_probs=23.7

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .++.-+.|.||+|+||||+++.+|..+
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            445668999999999999999999976

>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}

Probab=94.90  E-value=0.014  Score=53.60  Aligned_cols=24  Identities=38%  Similarity=0.580  Sum_probs=20.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +++++.+|+|+|||.++-.++...
T Consensus        49 ~~~li~~~tGsGKT~~~~~~~~~~   72 (216)
T 3b6e_A           49 KNIIICLPTGSGKTRVAVYIAKDH   72 (216)
T ss_dssp             CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCCCCHHHHHHHHHHHH
Confidence            479999999999999888777643

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=94.89  E-value=0.012  Score=55.28  Aligned_cols=27  Identities=30%  Similarity=0.498  Sum_probs=22.7

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .++.-+.|.||+|+|||||++.++...
T Consensus        21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           21 NNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            344568899999999999999999866

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=94.83  E-value=0.012  Score=56.31  Aligned_cols=30  Identities=23%  Similarity=0.443  Sum_probs=26.0

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      .+-|.||||+||||+++.|++.++.+.+..
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~   39 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKEKFGIPQIST   39 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred             ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence            367899999999999999999998776654

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=94.82  E-value=0.026  Score=58.98  Aligned_cols=34  Identities=35%  Similarity=0.267  Sum_probs=27.6

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      +..+++.|+||+||||++..+|..+   |.++..+++
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~  135 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA  135 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence            4579999999999999999999977   455655554

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=94.79  E-value=0.016  Score=63.30  Aligned_cols=36  Identities=19%  Similarity=0.342  Sum_probs=31.0

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV  285 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l  285 (496)
                      ..|+|+|.||+||||+++.+++.+   |.+++.++...+
T Consensus        53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i   91 (630)
T 1x6v_B           53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI   91 (630)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence            458999999999999999999999   888888875433

>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A

Probab=94.76  E-value=0.071  Score=50.37  Aligned_cols=18  Identities=22%  Similarity=0.283  Sum_probs=15.5

Q ss_pred             ceeeeeCCCCChhHHHHH
Q 010975          250 KGILLFGPPGTGKTMLAK  267 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAr  267 (496)
                      +++++.+|+|+|||...-
T Consensus        67 ~~~l~~apTGsGKT~~~~   84 (242)
T 3fe2_A           67 LDMVGVAQTGSGKTLSYL   84 (242)
T ss_dssp             CCEEEEECTTSCHHHHHH
T ss_pred             CCEEEECCCcCHHHHHHH
Confidence            579999999999998643

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=94.72  E-value=0.046  Score=57.14  Aligned_cols=36  Identities=28%  Similarity=0.321  Sum_probs=28.5

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeecc
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISAS  283 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~s  283 (496)
                      +++.+++.|++|+||||++-.+|..+    |.++..+++.
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D  138 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD  138 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence            45678899999999999999999766    5566666654

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=94.66  E-value=0.018  Score=54.80  Aligned_cols=26  Identities=31%  Similarity=0.326  Sum_probs=23.2

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      +.-++|.||||+||||+++.+++.++
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            34588999999999999999999886

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=94.63  E-value=0.012  Score=58.17  Aligned_cols=35  Identities=14%  Similarity=0.249  Sum_probs=24.1

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhc---ceeeeeecccc
Q 010975          251 GILLFGPPGTGKTMLAKAVATECK---TTFFNISASSV  285 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~s~l  285 (496)
                      -|.|.||+|+||||+++.+++.++   ..+..+++.++
T Consensus         7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~   44 (290)
T 1a7j_A            7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF   44 (290)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence            478999999999999999999886   33444554444

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=94.60  E-value=0.017  Score=54.63  Aligned_cols=27  Identities=22%  Similarity=0.284  Sum_probs=23.1

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      ++.-+.|.||+|+|||||++.++....
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            345688999999999999999998764

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=94.59  E-value=0.035  Score=55.23  Aligned_cols=25  Identities=24%  Similarity=0.303  Sum_probs=22.4

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +..+.|.||+|+||||+++.+|..+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHH
Confidence            4568899999999999999999876

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=94.58  E-value=0.02  Score=52.76  Aligned_cols=32  Identities=28%  Similarity=0.399  Sum_probs=27.8

Q ss_pred             eeeeCCCCChhHHHHHHHHhhhcceeeeeeccc
Q 010975          252 ILLFGPPGTGKTMLAKAVATECKTTFFNISASS  284 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~  284 (496)
                      ++++|++|+|||++|+.++.. +.+.+++....
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~   33 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ   33 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence            689999999999999999988 87887777644

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=94.57  E-value=0.053  Score=53.55  Aligned_cols=70  Identities=24%  Similarity=0.231  Sum_probs=42.9

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccc-----------c-----cc---cC-ChHHHHHHHHHHh
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV-----------S-----KW---RG-DSEKLIKVLFELA  304 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~-----------~-----~~---~G-~~e~~l~~lf~~a  304 (496)
                      ++..+.+.|++|+||||++..+|..+   +..+..+++.-..           .     -+   .+ ......+..+..+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~  176 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA  176 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence            45668888999999999999999876   4444444331100           0     00   01 1223335566666


Q ss_pred             hhcCCcceehhhH
Q 010975          305 RHHAPSTIFLDEI  317 (496)
Q Consensus       305 ~~~~p~ILfIDEI  317 (496)
                      ....+.+++||+-
T Consensus       177 ~~~~~D~viiDtp  189 (295)
T 1ls1_A          177 RLEARDLILVDTA  189 (295)
T ss_dssp             HHHTCCEEEEECC
T ss_pred             HhCCCCEEEEeCC
Confidence            5456789999976

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=94.53  E-value=0.018  Score=57.44  Aligned_cols=31  Identities=26%  Similarity=0.443  Sum_probs=25.6

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhhccee
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATECKTTF  277 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l~~~~  277 (496)
                      ++...+.|+||+|+|||||++.|+..+...+
T Consensus       124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I  154 (305)
T 2v9p_A          124 PKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV  154 (305)
T ss_dssp             TTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence            4456799999999999999999999874443

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=94.48  E-value=0.019  Score=54.55  Aligned_cols=29  Identities=24%  Similarity=0.369  Sum_probs=26.9

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      -|.|.|++|||||++++.+|+.+|.+++.
T Consensus        16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d   44 (223)
T 3hdt_A           16 IITIEREYGSGGRIVGKKLAEELGIHFYD   44 (223)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence            57899999999999999999999999875

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=94.45  E-value=0.013  Score=55.30  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=15.9

Q ss_pred             cceeeeeCCCCChhHHHHHHHH-hhh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVA-TEC  273 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA-~~l  273 (496)
                      +.-+.|.||+|+||||+++.++ ...
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3458899999999999999999 765

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=94.43  E-value=0.02  Score=54.56  Aligned_cols=27  Identities=15%  Similarity=0.116  Sum_probs=23.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcce
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTT  276 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~  276 (496)
                      .-+-|.||+|+||||+++.++..+|..
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            457899999999999999999988654

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=94.37  E-value=0.023  Score=55.26  Aligned_cols=28  Identities=32%  Similarity=0.382  Sum_probs=23.2

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.+..-++|+||||+|||||++.++..+
T Consensus        27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           27 MVAGTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3444669999999999999999998744

>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}

Probab=94.37  E-value=0.12  Score=48.17  Aligned_cols=18  Identities=28%  Similarity=0.440  Sum_probs=15.4

Q ss_pred             ceeeeeCCCCChhHHHHH
Q 010975          250 KGILLFGPPGTGKTMLAK  267 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAr  267 (496)
                      +++++.+|+|+|||..+-
T Consensus        58 ~~~l~~apTGsGKT~~~~   75 (228)
T 3iuy_A           58 IDLIVVAQTGTGKTLSYL   75 (228)
T ss_dssp             CCEEEECCTTSCHHHHHH
T ss_pred             CCEEEECCCCChHHHHHH
Confidence            579999999999997543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.35  E-value=0.035  Score=59.34  Aligned_cols=75  Identities=21%  Similarity=0.271  Sum_probs=47.0

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccc----cc------------------cc----c--CChH
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV----VS------------------KW----R--GDSE  294 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l----~~------------------~~----~--G~~e  294 (496)
                      +.+...++|.||||+|||+|++.++...   |.+.+.+...+-    ..                  .+    .  -...
T Consensus       278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g  357 (525)
T 1tf7_A          278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLE  357 (525)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHH
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHH
Confidence            3444568999999999999999998765   333433332110    00                  00    0  0223


Q ss_pred             HHHHHHHHHhhhcCCcceehhhHHHH
Q 010975          295 KLIKVLFELARHHAPSTIFLDEIDAI  320 (496)
Q Consensus       295 ~~l~~lf~~a~~~~p~ILfIDEID~L  320 (496)
                      ...+.++..+...+|.+|+||=+..+
T Consensus       358 ~~q~~~~a~~l~~~p~llilDp~~~L  383 (525)
T 1tf7_A          358 DHLQIIKSEINDFKPARIAIDSLSAL  383 (525)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEECHHHH
T ss_pred             HHHHHHHHHHHhhCCCEEEEcChHHH
Confidence            45555666677788999999955555

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=94.35  E-value=0.033  Score=56.82  Aligned_cols=27  Identities=26%  Similarity=0.240  Sum_probs=23.9

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .++.-+.|.||+|+||||+++.+|..+
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            455678999999999999999999976

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=94.26  E-value=0.017  Score=55.62  Aligned_cols=29  Identities=21%  Similarity=0.313  Sum_probs=24.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh-cceee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC-KTTFF  278 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l-~~~~i  278 (496)
                      .-|+|.|++|+||||+++.|++.+ +..++
T Consensus        25 ~~I~ieG~~GsGKST~~~~L~~~l~~~~~i   54 (263)
T 1p5z_B           25 KKISIEGNIAAGKSTFVNILKQLCEDWEVV   54 (263)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence            468899999999999999999998 54444

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=94.25  E-value=0.021  Score=55.91  Aligned_cols=27  Identities=19%  Similarity=0.240  Sum_probs=23.0

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-++|.||||+||||+++.++..+
T Consensus        33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           33 RGGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            344568999999999999999998866

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=94.13  E-value=0.024  Score=60.73  Aligned_cols=27  Identities=26%  Similarity=0.386  Sum_probs=23.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcce
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTT  276 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~  276 (496)
                      .-|+|+|.||+||||+++.+++.++..
T Consensus        36 ~lIvlvGlpGSGKSTia~~La~~L~~~   62 (520)
T 2axn_A           36 TVIVMVGLPARGKTYISKKLTRYLNWI   62 (520)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            458999999999999999999988543

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=94.07  E-value=0.04  Score=54.87  Aligned_cols=37  Identities=22%  Similarity=0.143  Sum_probs=28.4

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      +.+..-++|.|+||+|||+++..+|...   +.+++.++.
T Consensus        65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl  104 (315)
T 3bh0_A           65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL  104 (315)
T ss_dssp             BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence            3445569999999999999999998765   456666654

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=94.04  E-value=0.064  Score=60.34  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=20.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .-++|+||.|+||||+.|.++..
T Consensus       608 ~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          608 RMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHHHH
Confidence            45889999999999999999874

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=94.02  E-value=0.025  Score=52.28  Aligned_cols=23  Identities=39%  Similarity=0.677  Sum_probs=21.0

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+.|.||+|+||||+++.++..+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            47899999999999999999876

>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*

Probab=94.02  E-value=0.096  Score=53.42  Aligned_cols=20  Identities=30%  Similarity=0.552  Sum_probs=16.3

Q ss_pred             ceeeeeCCCCChhHHHHHHH
Q 010975          250 KGILLFGPPGTGKTMLAKAV  269 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAral  269 (496)
                      +++++.+|+|+|||..+-..
T Consensus        37 ~~~lv~apTGsGKT~~~l~~   56 (414)
T 3oiy_A           37 KSFTMVAPTGVGKTTFGMMT   56 (414)
T ss_dssp             CCEECCSCSSSSHHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHH
Confidence            57999999999999854444

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=93.97  E-value=0.029  Score=59.22  Aligned_cols=25  Identities=36%  Similarity=0.521  Sum_probs=21.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      ..++|+||+|+|||+|++.++....
T Consensus       152 q~~~i~G~sGvGKTtL~~~l~~~~~  176 (473)
T 1sky_E          152 GKIGLFGGAGVGKTVLIQELIHNIA  176 (473)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCccHHHHHHHhhhh
Confidence            4589999999999999999987653

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=93.96  E-value=0.028  Score=60.91  Aligned_cols=35  Identities=20%  Similarity=0.244  Sum_probs=29.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc----ceeeeeeccc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK----TTFFNISASS  284 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~----~~~i~v~~s~  284 (496)
                      ..|+|.|+||+||||+|+.+++.++    .+++.++...
T Consensus       397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~  435 (573)
T 1m8p_A          397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT  435 (573)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred             eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence            4588999999999999999999986    6777776543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=93.94  E-value=0.06  Score=54.46  Aligned_cols=31  Identities=19%  Similarity=0.298  Sum_probs=24.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh---cceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v  280 (496)
                      ..+.|.|+||+||||++..++..+   |.++..+
T Consensus        80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi  113 (355)
T 3p32_A           80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL  113 (355)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence            468999999999999999998876   4444433

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=93.87  E-value=0.13  Score=53.69  Aligned_cols=35  Identities=26%  Similarity=0.217  Sum_probs=27.1

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      ++..+++.|++|+||||++..+|..+   +..+..+++
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~  134 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA  134 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence            45678889999999999999999877   445554443

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=93.82  E-value=0.042  Score=57.17  Aligned_cols=25  Identities=36%  Similarity=0.418  Sum_probs=22.2

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      ..++|.||+|+||||++++++..+.
T Consensus       168 gii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhcC
Confidence            3589999999999999999999773

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=93.81  E-value=0.027  Score=53.72  Aligned_cols=28  Identities=18%  Similarity=0.381  Sum_probs=23.9

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.+...+.|.||+|+|||||++.++...
T Consensus        28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3445568999999999999999999866

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=93.77  E-value=0.037  Score=54.90  Aligned_cols=25  Identities=20%  Similarity=0.190  Sum_probs=22.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      .-+.|.||+|+||||+++.++..++
T Consensus        81 ~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4578999999999999999999765

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=93.77  E-value=0.036  Score=52.58  Aligned_cols=25  Identities=16%  Similarity=0.282  Sum_probs=22.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      .-+.|.|++|+||||+++.+++.++
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            4589999999999999999999983

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=93.76  E-value=0.083  Score=55.95  Aligned_cols=79  Identities=6%  Similarity=-0.079  Sum_probs=45.4

Q ss_pred             hhhhhCCCCCccchhhcchHHHHHHhhhhc------ccc-cCccc--cccccCccceeeeeCCCCChhHHHHHHHHhhh-
Q 010975          204 RDIIRGSPDVKWESIKGLENAKRLLKEAVV------MPI-KYPKY--FTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-  273 (496)
Q Consensus       204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~------~~~-~~~~~--~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-  273 (496)
                      ........+...+.++...+..+.+.+.+.      .+. ..+.+  ...++.+..-++|.|+||+|||+++..+|... 
T Consensus       188 ~~~i~~a~~~~~~~i~~~~~~~~~i~~~~~~~~~~~i~t~G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a  267 (503)
T 1q57_A          188 MEQVWNAGPWIPDGVVSALSLRERIREHLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWG  267 (503)
T ss_dssp             HHHHTTCCCCCCSSEEEGGGGHHHHHHHHHHSCTTCSCCSSCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCCCHHHhcChHHHHHHHHhhhcccccCCccccchhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHH
Confidence            444444455555566654455555543221      111 11111  11234555669999999999999999998765 


Q ss_pred             ---cceeeeeec
Q 010975          274 ---KTTFFNISA  282 (496)
Q Consensus       274 ---~~~~i~v~~  282 (496)
                         |.+++.++.
T Consensus       268 ~~~g~~vl~~s~  279 (503)
T 1q57_A          268 TAMGKKVGLAML  279 (503)
T ss_dssp             TTSCCCEEEEES
T ss_pred             HhcCCcEEEEec
Confidence               456666654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=93.75  E-value=0.053  Score=48.72  Aligned_cols=24  Identities=33%  Similarity=0.602  Sum_probs=21.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ..+++.|++|+|||+|+..+....
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            479999999999999999998753

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=93.73  E-value=0.029  Score=51.40  Aligned_cols=24  Identities=29%  Similarity=0.441  Sum_probs=21.9

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..++||.|++|+|||++|.++...
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            468999999999999999999885

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=93.72  E-value=0.029  Score=53.62  Aligned_cols=28  Identities=25%  Similarity=0.329  Sum_probs=24.1

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.+..-+.|.||+|+|||||++.++...
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           28 IPEGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3445568999999999999999999976

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=93.72  E-value=0.034  Score=55.52  Aligned_cols=27  Identities=19%  Similarity=0.031  Sum_probs=23.0

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      ++.-+.|.||+|+|||||++.|+..+.
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence            334588999999999999999999773

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=93.60  E-value=0.027  Score=53.38  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=23.1

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||+|+|||||++.++...
T Consensus        28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           28 KKGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344568899999999999999999866

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=93.56  E-value=0.053  Score=49.33  Aligned_cols=24  Identities=21%  Similarity=0.188  Sum_probs=21.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .-+.|.|++|+||||++..++..+
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhh
Confidence            458899999999999999999876

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=93.50  E-value=0.086  Score=50.93  Aligned_cols=24  Identities=33%  Similarity=0.466  Sum_probs=21.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ..+.|.|+||+|||+|.+++....
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998753

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=93.46  E-value=0.039  Score=54.49  Aligned_cols=26  Identities=23%  Similarity=0.376  Sum_probs=23.0

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKT  275 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~  275 (496)
                      .-+.|.||+|+||||+++.|+..++.
T Consensus        32 ~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           32 LFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            45889999999999999999998853

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=93.45  E-value=0.032  Score=60.19  Aligned_cols=36  Identities=22%  Similarity=0.276  Sum_probs=27.7

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhc----ceeeeeeccc
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASS  284 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~----~~~i~v~~s~  284 (496)
                      +..+.|.|++|+||||++++|+..++    .++..++...
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~  408 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI  408 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred             ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence            35689999999999999999999885    3344455433

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=93.42  E-value=0.031  Score=58.88  Aligned_cols=27  Identities=26%  Similarity=0.389  Sum_probs=23.9

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcce
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTT  276 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~  276 (496)
                      ..|+|.|.||+||||+++.++..++..
T Consensus        40 ~~IvlvGlpGsGKSTia~~La~~l~~~   66 (469)
T 1bif_A           40 TLIVMVGLPARGKTYISKKLTRYLNFI   66 (469)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence            468999999999999999999987543

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=93.41  E-value=0.036  Score=53.13  Aligned_cols=28  Identities=25%  Similarity=0.341  Sum_probs=23.9

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.+...+.|.||+|+|||||++.++...
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           25 AQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3445568999999999999999999876

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=93.39  E-value=0.036  Score=53.85  Aligned_cols=27  Identities=19%  Similarity=0.298  Sum_probs=23.3

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||+|+|||||++.++...
T Consensus        30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           30 RAGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            444568899999999999999999876

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=93.26  E-value=0.041  Score=52.76  Aligned_cols=27  Identities=26%  Similarity=0.524  Sum_probs=23.6

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.+ .-+.|.||+|+|||||.+.++...
T Consensus        22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           22 MGR-DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence            345 678899999999999999999876

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=93.23  E-value=0.12  Score=52.03  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=21.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .-+.|.||||+|||||.+.++..+
T Consensus        56 ~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           56 IRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhh
Confidence            458899999999999999999765

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=93.19  E-value=0.037  Score=52.57  Aligned_cols=27  Identities=26%  Similarity=0.283  Sum_probs=23.5

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||.|+|||||.+.++...
T Consensus        32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           32 ERGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444568899999999999999999976

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=93.17  E-value=0.045  Score=51.70  Aligned_cols=30  Identities=13%  Similarity=0.035  Sum_probs=23.3

Q ss_pred             eeeeCCCCChhHHHHHHHHhhh---cceeeeee
Q 010975          252 ILLFGPPGTGKTMLAKAVATEC---KTTFFNIS  281 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l---~~~~i~v~  281 (496)
                      .+++||.|+|||+.+-.++...   +..++.+.
T Consensus        31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k   63 (214)
T 2j9r_A           31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK   63 (214)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            5689999999999888887766   55555553

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=93.16  E-value=0.04  Score=49.49  Aligned_cols=24  Identities=21%  Similarity=0.286  Sum_probs=21.7

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhc
Q 010975          251 GILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      -.+|+||.|+|||+++++|...++
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            578999999999999999998775

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=93.15  E-value=0.037  Score=53.52  Aligned_cols=27  Identities=26%  Similarity=0.422  Sum_probs=23.2

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||.|+|||||.+.++...
T Consensus        31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           31 NKGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344568899999999999999999876

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=93.14  E-value=0.041  Score=53.38  Aligned_cols=28  Identities=25%  Similarity=0.323  Sum_probs=23.9

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.+...+.|.||+|+|||||++.++...
T Consensus        43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           43 IPSGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            3445568999999999999999999865

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=93.12  E-value=0.06  Score=54.03  Aligned_cols=25  Identities=16%  Similarity=0.139  Sum_probs=22.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      .-+.|.||+|+||||+++.++..++
T Consensus        93 ~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           93 YIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3578999999999999999998875

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=93.12  E-value=0.091  Score=54.18  Aligned_cols=25  Identities=36%  Similarity=0.525  Sum_probs=22.2

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ...++|.||+|+|||+|++.|++..
T Consensus       174 GQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          174 GQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEecCCCCChhHHHHHHHHHH
Confidence            3569999999999999999999865

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=93.11  E-value=0.062  Score=60.26  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=19.3

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ...+++.||+|+|||+++..+...
T Consensus       109 ~~~vii~gpTGSGKTtllp~ll~~  132 (773)
T 2xau_A          109 NQIMVFVGETGSGKTTQIPQFVLF  132 (773)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            356999999999999977766543

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=93.11  E-value=0.038  Score=52.14  Aligned_cols=27  Identities=33%  Similarity=0.436  Sum_probs=23.1

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||.|+|||||++.++...
T Consensus        33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           33 EKGNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344558899999999999999999876

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=93.07  E-value=0.039  Score=51.75  Aligned_cols=23  Identities=43%  Similarity=0.621  Sum_probs=20.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .-+.|.||+|+|||||++.++..
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            45889999999999999999975

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=93.06  E-value=0.044  Score=49.94  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=20.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..++|.|++|+|||+|++.++..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            35899999999999999999875

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=93.04  E-value=0.046  Score=49.85  Aligned_cols=24  Identities=29%  Similarity=0.254  Sum_probs=21.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .-+.|.|++|+||||+++.+...+
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhc
Confidence            468899999999999999999875

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=93.04  E-value=0.04  Score=53.05  Aligned_cols=27  Identities=26%  Similarity=0.324  Sum_probs=23.4

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||+|+|||||++.++...
T Consensus        33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           33 KQGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            444568899999999999999999976

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=93.03  E-value=0.075  Score=56.70  Aligned_cols=26  Identities=15%  Similarity=0.074  Sum_probs=24.0

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKT  275 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~  275 (496)
                      ..++|.|.+|+||||+++++|+.++.
T Consensus       396 ~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          396 FSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             eEEEecccCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999974

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=93.03  E-value=0.048  Score=47.09  Aligned_cols=23  Identities=22%  Similarity=0.504  Sum_probs=20.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..+++.|++|+|||+|++.+...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999999874

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=93.03  E-value=0.044  Score=53.34  Aligned_cols=27  Identities=19%  Similarity=0.405  Sum_probs=23.3

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||+|+|||||++.++...
T Consensus        48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           48 REGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            344568899999999999999999876

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=93.02  E-value=0.043  Score=53.57  Aligned_cols=27  Identities=33%  Similarity=0.463  Sum_probs=23.5

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||+|+|||||++.|+...
T Consensus        43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           43 YPGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            444568899999999999999999976

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=93.02  E-value=0.047  Score=53.13  Aligned_cols=27  Identities=30%  Similarity=0.497  Sum_probs=23.1

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||.|+|||||++.++...
T Consensus        44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl~   70 (267)
T 2zu0_C           44 HPGEVHAIMGPNGSGKSTLSATLAGRE   70 (267)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444568899999999999999999963

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=93.00  E-value=0.043  Score=52.81  Aligned_cols=26  Identities=35%  Similarity=0.511  Sum_probs=22.5

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .+..-+.|.||+|+|||||++.++..
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           27 PKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34456889999999999999999986

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=92.98  E-value=0.041  Score=52.65  Aligned_cols=27  Identities=30%  Similarity=0.320  Sum_probs=23.1

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||.|+|||||.+.++...
T Consensus        30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           30 PRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344568899999999999999999876

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=92.96  E-value=0.042  Score=49.90  Aligned_cols=23  Identities=26%  Similarity=0.458  Sum_probs=20.7

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .++|.|++|+|||||++.++...
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998754

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=92.96  E-value=0.065  Score=58.49  Aligned_cols=23  Identities=39%  Similarity=0.624  Sum_probs=19.0

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ..++.||||||||+++..++..+
T Consensus       197 ~~li~GppGTGKT~~~~~~i~~l  219 (624)
T 2gk6_A          197 LSLIQGPPGTGKTVTSATIVYHL  219 (624)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999877776544

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=92.93  E-value=0.043  Score=52.98  Aligned_cols=28  Identities=29%  Similarity=0.374  Sum_probs=23.7

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      .+...+.|.||.|+|||||.+.++....
T Consensus        24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           24 RAGEILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3445688999999999999999998764

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=92.89  E-value=0.043  Score=53.80  Aligned_cols=27  Identities=19%  Similarity=0.186  Sum_probs=23.2

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||+|+|||||++.++...
T Consensus        32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           32 KRGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            344558899999999999999999866

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=92.89  E-value=0.043  Score=49.30  Aligned_cols=22  Identities=27%  Similarity=0.579  Sum_probs=20.1

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .++|.|++|+|||+|++.++..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999873

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.87  E-value=0.055  Score=49.80  Aligned_cols=24  Identities=33%  Similarity=0.602  Sum_probs=21.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ..+++.|++|+|||+|+..+....
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            479999999999999999998754

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=92.84  E-value=0.049  Score=52.78  Aligned_cols=27  Identities=30%  Similarity=0.352  Sum_probs=23.3

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||.|+|||||.+.++...
T Consensus        39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           39 EEGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            444568899999999999999999876

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=92.81  E-value=0.043  Score=53.43  Aligned_cols=27  Identities=22%  Similarity=0.415  Sum_probs=23.2

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||+|+|||||++.++...
T Consensus        35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           35 ASGEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            344568899999999999999999866

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=92.80  E-value=0.036  Score=56.39  Aligned_cols=70  Identities=23%  Similarity=0.293  Sum_probs=41.9

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhhc--ceeeeeecc-ccc-----c--cccC-C-------hHHHHHHHHHHhhhcCC
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISAS-SVV-----S--KWRG-D-------SEKLIKVLFELARHHAP  309 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l~--~~~i~v~~s-~l~-----~--~~~G-~-------~e~~l~~lf~~a~~~~p  309 (496)
                      +...++|.||+|+||||++++++....  ...+.++.. ++.     .  .++. +       ....++..+..+....|
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~p  253 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKP  253 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCC
Confidence            345799999999999999999999773  223333321 110     0  0111 0       11123455555656678


Q ss_pred             cceehhhH
Q 010975          310 STIFLDEI  317 (496)
Q Consensus       310 ~ILfIDEI  317 (496)
                      ..++++|+
T Consensus       254 d~~l~~e~  261 (361)
T 2gza_A          254 TRILLAEL  261 (361)
T ss_dssp             SEEEESCC
T ss_pred             CEEEEcCc
Confidence            88888886

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=92.79  E-value=0.049  Score=52.97  Aligned_cols=27  Identities=30%  Similarity=0.381  Sum_probs=23.3

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||.|+|||||++.++...
T Consensus        31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           31 NEGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            444568899999999999999999876

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=92.73  E-value=0.05  Score=47.96  Aligned_cols=23  Identities=35%  Similarity=0.550  Sum_probs=20.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..++|.|++|+|||+|.+.++..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999999873

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=92.69  E-value=0.062  Score=54.45  Aligned_cols=27  Identities=30%  Similarity=0.501  Sum_probs=23.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcce
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTT  276 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~  276 (496)
                      ..+.|.||+|+|||||++.|+..+...
T Consensus       171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          171 KTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            568999999999999999999987543

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=92.67  E-value=0.059  Score=50.66  Aligned_cols=25  Identities=28%  Similarity=0.356  Sum_probs=22.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      .-+.|.|++|+||||+++.+++.++
T Consensus         7 ~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            7 LFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4578899999999999999999884

>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}

Probab=92.66  E-value=0.18  Score=47.39  Aligned_cols=17  Identities=35%  Similarity=0.640  Sum_probs=14.9

Q ss_pred             ceeeeeCCCCChhHHHH
Q 010975          250 KGILLFGPPGTGKTMLA  266 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LA  266 (496)
                      +++++.+|+|+|||..+
T Consensus        67 ~~~l~~a~TGsGKT~~~   83 (245)
T 3dkp_A           67 RELLASAPTGSGKTLAF   83 (245)
T ss_dssp             CCEEEECCTTSCHHHHH
T ss_pred             CCEEEECCCCCcHHHHH
Confidence            57999999999999863

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=92.65  E-value=0.065  Score=50.47  Aligned_cols=31  Identities=29%  Similarity=0.351  Sum_probs=27.0

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNISA  282 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~  282 (496)
                      .|-|+|..||||||+++.++. +|.+++..+.
T Consensus        11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~   41 (210)
T 4i1u_A           11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL   41 (210)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence            588999999999999999998 8988876553

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=92.64  E-value=0.049  Score=53.48  Aligned_cols=27  Identities=26%  Similarity=0.341  Sum_probs=23.2

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||.|+|||||++.++...
T Consensus        45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           45 AKGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            344568899999999999999999876

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=92.63  E-value=0.048  Score=52.65  Aligned_cols=27  Identities=19%  Similarity=0.219  Sum_probs=23.2

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .++.-+.|.||+|+|||||.+.++...
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           29 NKGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344568899999999999999999876

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=92.59  E-value=0.057  Score=46.89  Aligned_cols=23  Identities=13%  Similarity=0.278  Sum_probs=20.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -.+++.|++|+|||+|++.+...
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            36899999999999999999864

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=92.58  E-value=0.087  Score=53.23  Aligned_cols=36  Identities=17%  Similarity=0.122  Sum_probs=28.4

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      .+..-++|.|+||+|||+++..+|...   +.++..++.
T Consensus        44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl   82 (338)
T 4a1f_A           44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL   82 (338)
T ss_dssp             CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            344568999999999999999998865   566666654

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=92.57  E-value=0.062  Score=46.42  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=20.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -.+++.|++|+|||+|+..+...
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            36999999999999999998763

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=92.57  E-value=0.03  Score=58.61  Aligned_cols=23  Identities=35%  Similarity=0.346  Sum_probs=19.9

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      +-.++.|+||||||+++..++..
T Consensus       162 ~v~~I~G~aGsGKTt~I~~~~~~  184 (446)
T 3vkw_A          162 KVVLVDGVPGCGKTKEILSRVNF  184 (446)
T ss_dssp             EEEEEEECTTSCHHHHHHHHCCT
T ss_pred             cEEEEEcCCCCCHHHHHHHHhcc
Confidence            45789999999999999888764

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=92.54  E-value=0.056  Score=47.39  Aligned_cols=23  Identities=43%  Similarity=0.677  Sum_probs=20.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -.+++.|++|+|||+|++.+...
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEECCCCccHHHHHHHHhcC
Confidence            46999999999999999999764

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=92.53  E-value=0.072  Score=49.17  Aligned_cols=25  Identities=24%  Similarity=0.426  Sum_probs=22.2

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      ..+++.|++|+||||++..++..+.
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            4689999999999999999998763

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=92.49  E-value=0.05  Score=51.82  Aligned_cols=26  Identities=27%  Similarity=0.216  Sum_probs=19.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKT  275 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~  275 (496)
                      .-+.|.||+|+||||+++.+++.++.
T Consensus        26 ~~I~~eG~~GsGKsT~~~~l~~~l~~   51 (227)
T 3v9p_A           26 KFITFEGIDGAGKTTHLQWFCDRLQE   51 (227)
T ss_dssp             CEEEEECCC---CHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            34788999999999999999998843

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=92.46  E-value=0.055  Score=55.17  Aligned_cols=27  Identities=30%  Similarity=0.454  Sum_probs=23.0

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||+|+|||||.+.|+...
T Consensus        28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           28 DPGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            344558899999999999999999965

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=92.44  E-value=0.094  Score=62.27  Aligned_cols=28  Identities=18%  Similarity=0.331  Sum_probs=24.5

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ++++..+.|+||+|+||||+++.+...+
T Consensus       441 i~~G~~vaivG~sGsGKSTll~ll~~~~  468 (1321)
T 4f4c_A          441 VNAGQTVALVGSSGCGKSTIISLLLRYY  468 (1321)
T ss_dssp             ECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred             ecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence            4555679999999999999999999977

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=92.43  E-value=0.053  Score=52.88  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=21.1

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+.|.||+|+|||||.+.|+...
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999865

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=92.42  E-value=0.08  Score=46.57  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=21.0

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ...|++.|++|+|||+|++.+...
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            357999999999999999999763

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=92.38  E-value=0.067  Score=46.25  Aligned_cols=23  Identities=22%  Similarity=0.485  Sum_probs=20.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..+++.|++|+|||+|++.+...
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999999864

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=92.33  E-value=0.16  Score=58.65  Aligned_cols=21  Identities=29%  Similarity=0.452  Sum_probs=19.0

Q ss_pred             ceeeeeCCCCChhHHHHHHHH
Q 010975          250 KGILLFGPPGTGKTMLAKAVA  270 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA  270 (496)
                      ..++|+||.|+||||+.|.++
T Consensus       790 ~i~~ItGpNgsGKSTlLr~iG  810 (1022)
T 2o8b_B          790 YCVLVTGPNMGGKSTLMRQAG  810 (1022)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHH
Confidence            568899999999999999994

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=92.32  E-value=0.042  Score=49.89  Aligned_cols=25  Identities=20%  Similarity=0.263  Sum_probs=22.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      ..+.|.||+|+|||||++.++..+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3578999999999999999999774

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=92.30  E-value=0.059  Score=46.40  Aligned_cols=22  Identities=23%  Similarity=0.487  Sum_probs=20.1

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .+++.|++|+|||+|++.+...
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999864

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=92.30  E-value=0.065  Score=54.67  Aligned_cols=27  Identities=30%  Similarity=0.428  Sum_probs=23.0

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||+|+|||||.+.|+...
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           27 KDGEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            344558899999999999999999865

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=92.30  E-value=0.058  Score=54.75  Aligned_cols=27  Identities=26%  Similarity=0.470  Sum_probs=23.1

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||+|+|||||.+.|+...
T Consensus        24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           24 ESGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence            344568899999999999999999865

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=92.27  E-value=0.07  Score=46.40  Aligned_cols=24  Identities=21%  Similarity=0.387  Sum_probs=21.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      -.+++.|++|+|||+|++.+...-
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            469999999999999999998643

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=92.27  E-value=0.093  Score=49.53  Aligned_cols=27  Identities=30%  Similarity=0.284  Sum_probs=24.2

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcce
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTT  276 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~  276 (496)
                      .-+.|.|++|+||||+++.+++.++.+
T Consensus         6 ~~i~~eG~~g~GKst~~~~l~~~l~~~   32 (216)
T 3tmk_A            6 KLILIEGLDRTGKTTQCNILYKKLQPN   32 (216)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            458899999999999999999999763

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=92.27  E-value=0.065  Score=54.60  Aligned_cols=27  Identities=30%  Similarity=0.326  Sum_probs=23.0

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||+|+|||||.+.|+.-.
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           27 KDGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            344568899999999999999999865

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=92.22  E-value=0.15  Score=49.12  Aligned_cols=23  Identities=39%  Similarity=0.574  Sum_probs=20.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      +.++|.|+||+|||+|..++...
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            36899999999999999999875

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=92.21  E-value=0.066  Score=51.28  Aligned_cols=25  Identities=28%  Similarity=0.365  Sum_probs=22.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      .-+.|.|++|+||||+++.+++.++
T Consensus        28 ~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           28 KFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             CEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4588999999999999999999884

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=92.21  E-value=0.21  Score=50.17  Aligned_cols=24  Identities=25%  Similarity=0.379  Sum_probs=21.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ..+.|.|+||+||||++..++..+
T Consensus        57 ~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           57 LRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHH
Confidence            568899999999999999998765

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.21  E-value=0.066  Score=46.46  Aligned_cols=23  Identities=17%  Similarity=0.393  Sum_probs=20.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -.+++.|++|+|||+|++++...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=92.20  E-value=0.069  Score=46.47  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -.+++.|++|+|||+|++.+...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999999863

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=92.18  E-value=0.062  Score=54.68  Aligned_cols=26  Identities=31%  Similarity=0.437  Sum_probs=22.5

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +..-+.|.||+|+|||||.+.|+...
T Consensus        40 ~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           40 EGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            34458899999999999999999865

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=92.18  E-value=0.068  Score=54.88  Aligned_cols=27  Identities=26%  Similarity=0.410  Sum_probs=23.1

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||+|+|||||.+.|+...
T Consensus        27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           27 HEGEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence            344558899999999999999999966

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=92.18  E-value=0.067  Score=47.74  Aligned_cols=23  Identities=35%  Similarity=0.550  Sum_probs=20.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..++|.|++|+|||+|++.++..
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46999999999999999999874

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=92.17  E-value=0.069  Score=54.69  Aligned_cols=27  Identities=30%  Similarity=0.402  Sum_probs=23.0

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||+|+|||||.+.|+...
T Consensus        35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           35 KDGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            344568899999999999999999865

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=92.14  E-value=0.074  Score=46.75  Aligned_cols=23  Identities=30%  Similarity=0.497  Sum_probs=20.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..+++.|++|+|||+|++.+...
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999999753

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=92.13  E-value=0.098  Score=54.75  Aligned_cols=38  Identities=21%  Similarity=0.141  Sum_probs=29.7

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecc
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS  283 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s  283 (496)
                      +.+..-++|.|+||+|||+++..+|...   |.++..++..
T Consensus       194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE  234 (444)
T 3bgw_A          194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE  234 (444)
T ss_dssp             BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence            4555669999999999999999998766   5567666543

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=92.09  E-value=0.069  Score=58.17  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=20.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.++++||||||||+++..+...+
T Consensus       165 ~~~vi~G~pGTGKTt~l~~ll~~l  188 (608)
T 1w36_D          165 RISVISGGPGTGKTTTVAKLLAAL  188 (608)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHHHH
Confidence            569999999999999988877654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=92.04  E-value=0.069  Score=46.59  Aligned_cols=21  Identities=33%  Similarity=0.605  Sum_probs=19.2

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      .+++.|++|+|||+|++.+..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999974

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=92.04  E-value=0.074  Score=46.34  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=20.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -.+++.|++|+|||+|++.+...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46999999999999999999864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=92.03  E-value=0.078  Score=46.65  Aligned_cols=23  Identities=26%  Similarity=0.534  Sum_probs=20.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..+++.|++|+|||+|++.+...
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999998764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=92.01  E-value=0.091  Score=45.80  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=20.2

Q ss_pred             ceeeeeCCCCChhHHHHHHHHh
Q 010975          250 KGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~  271 (496)
                      ..+++.|++|+|||+|+..+..
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            5799999999999999999975

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=91.99  E-value=0.14  Score=50.97  Aligned_cols=24  Identities=38%  Similarity=0.407  Sum_probs=21.0

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .-++|.|+.|+||||+++.++...
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            357899999999999999999754

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=91.98  E-value=0.043  Score=50.16  Aligned_cols=25  Identities=12%  Similarity=0.169  Sum_probs=21.0

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ...+.|.|++|+|||||++.++...
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3469999999999999999998643

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=91.97  E-value=0.055  Score=47.07  Aligned_cols=22  Identities=41%  Similarity=0.751  Sum_probs=19.7

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .+++.|++|+|||+|++.+...
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCc
Confidence            5899999999999999999753

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=91.96  E-value=0.082  Score=46.52  Aligned_cols=23  Identities=35%  Similarity=0.507  Sum_probs=20.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -.+++.|++|+|||+|++.+...
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEEECcCCCCHHHHHHHHHhC
Confidence            46999999999999999999863

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=91.95  E-value=0.072  Score=47.44  Aligned_cols=23  Identities=30%  Similarity=0.531  Sum_probs=20.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..++|.|+||+|||+|.+.++..
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999874

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=91.90  E-value=0.069  Score=54.65  Aligned_cols=27  Identities=30%  Similarity=0.411  Sum_probs=23.0

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||+|+|||||.+.|+...
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           27 KDGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            344568899999999999999999865

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=91.89  E-value=0.07  Score=46.40  Aligned_cols=23  Identities=35%  Similarity=0.538  Sum_probs=20.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -.+++.|++|+|||+|++.+...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            36899999999999999999753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=91.87  E-value=0.079  Score=45.92  Aligned_cols=23  Identities=22%  Similarity=0.434  Sum_probs=20.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -.+++.|++|+|||+|++++...
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999999863

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=91.84  E-value=0.08  Score=45.94  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=20.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHh
Q 010975          250 KGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~  271 (496)
                      -.+++.|++|+|||+|++.+..
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            4699999999999999999986

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=91.81  E-value=0.066  Score=53.31  Aligned_cols=28  Identities=25%  Similarity=0.484  Sum_probs=24.3

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.+...+.|.||+|+|||||++.++..+
T Consensus        77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           77 VMPGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence            3455679999999999999999999876

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=91.77  E-value=0.084  Score=46.92  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=20.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHh
Q 010975          250 KGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~  271 (496)
                      ..|++.|++|+|||+|++.+..
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4699999999999999999986

>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A

Probab=91.75  E-value=0.22  Score=50.42  Aligned_cols=19  Identities=26%  Similarity=0.386  Sum_probs=15.9

Q ss_pred             ceeeeeCCCCChhHHHHHH
Q 010975          250 KGILLFGPPGTGKTMLAKA  268 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAra  268 (496)
                      +++++.+|+|+|||..+-.
T Consensus        75 ~~~lv~a~TGsGKT~~~~~   93 (410)
T 2j0s_A           75 RDVIAQSQSGTGKTATFSI   93 (410)
T ss_dssp             CCEEEECCTTSSHHHHHHH
T ss_pred             CCEEEECCCCCCchHHHHH
Confidence            5799999999999976543

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=91.71  E-value=0.11  Score=58.37  Aligned_cols=24  Identities=38%  Similarity=0.589  Sum_probs=19.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ...++.||||||||+++..++..+
T Consensus       372 ~~~lI~GppGTGKT~ti~~~i~~l  395 (800)
T 2wjy_A          372 PLSLIQGPPGTGKTVTSATIVYHL  395 (800)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHH
Confidence            357899999999999877776654

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=91.71  E-value=0.072  Score=52.60  Aligned_cols=28  Identities=25%  Similarity=0.306  Sum_probs=23.8

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.+..-+.|.||.|+|||||++.++...
T Consensus        61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           61 IERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3444568899999999999999999876

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=91.71  E-value=0.21  Score=48.07  Aligned_cols=23  Identities=35%  Similarity=0.426  Sum_probs=20.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..++|.|+||+|||+|..++...
T Consensus         6 ~kI~lvG~~nvGKTsL~n~l~g~   28 (258)
T 3a1s_A            6 VKVALAGCPNVGKTSLFNALTGT   28 (258)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC
Confidence            35899999999999999999863

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=91.70  E-value=0.084  Score=45.76  Aligned_cols=22  Identities=27%  Similarity=0.376  Sum_probs=19.5

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .+++.|++|+|||+|++.+...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999753

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=91.70  E-value=0.079  Score=51.51  Aligned_cols=25  Identities=32%  Similarity=0.622  Sum_probs=22.4

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ...+.|.||+|+|||||.+.++...
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            4568899999999999999999875

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=91.69  E-value=0.095  Score=49.76  Aligned_cols=26  Identities=27%  Similarity=0.208  Sum_probs=23.0

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKT  275 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~  275 (496)
                      .-+.|.|++|+||||+++.+++.++.
T Consensus        22 ~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           22 MFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            45788899999999999999998765

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=91.67  E-value=0.059  Score=54.75  Aligned_cols=27  Identities=26%  Similarity=0.396  Sum_probs=22.9

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||+|+|||||.+.|+...
T Consensus        29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            344568899999999999999999865

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=91.60  E-value=0.073  Score=46.81  Aligned_cols=23  Identities=30%  Similarity=0.472  Sum_probs=20.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -.+++.|++|+|||+|++.+...
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46999999999999999999763

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=91.48  E-value=0.091  Score=46.60  Aligned_cols=24  Identities=21%  Similarity=0.412  Sum_probs=21.0

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      -.+++.|++|+|||+|++.+....
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC
Confidence            369999999999999999998643

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=91.43  E-value=0.16  Score=60.27  Aligned_cols=28  Identities=25%  Similarity=0.484  Sum_probs=24.5

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ++++..+-|+||+|+|||||++.+.+-.
T Consensus      1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A         1102 VEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp             ECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence            4566679999999999999999999865

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=91.42  E-value=0.083  Score=54.41  Aligned_cols=27  Identities=33%  Similarity=0.437  Sum_probs=23.1

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||+|+|||||.+.|+...
T Consensus        45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           45 SPGQRVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            444568999999999999999999854

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=91.42  E-value=0.093  Score=46.02  Aligned_cols=24  Identities=21%  Similarity=0.337  Sum_probs=21.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ..+++.|++|+|||+|++.+...-
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            469999999999999999998643

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=91.39  E-value=0.085  Score=46.28  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=20.0

Q ss_pred             ceeeeeCCCCChhHHHHHHHHh
Q 010975          250 KGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~  271 (496)
                      -.+++.|++|+|||+|++.+..
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            3689999999999999999985

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=91.37  E-value=0.095  Score=46.80  Aligned_cols=24  Identities=29%  Similarity=0.375  Sum_probs=21.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      -.+++.|++|+|||+|++.+....
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhc
Confidence            369999999999999999888754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=91.33  E-value=0.098  Score=45.96  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=20.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..+++.|++|+|||+|++++...
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999999875

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=91.32  E-value=0.14  Score=52.32  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=26.9

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      ..++++.||+|+|||++++.++..+   +..++.++.
T Consensus        35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~   71 (392)
T 4ag6_A           35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP   71 (392)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred             cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence            3589999999999999999998765   555555543

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=91.31  E-value=0.14  Score=47.33  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=21.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ..+++.|++|+|||+|+..++...
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            468899999999999999999875

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=91.30  E-value=0.11  Score=55.98  Aligned_cols=34  Identities=24%  Similarity=0.291  Sum_probs=27.2

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc---ceeeeeecc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK---TTFFNISAS  283 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~s  283 (496)
                      ..++|+|++|+||||+++.+++.++   .++..++..
T Consensus       373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D  409 (546)
T 2gks_A          373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD  409 (546)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred             eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch
Confidence            4588999999999999999999875   355555543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=91.29  E-value=0.094  Score=47.05  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..+++.|++|+|||+|+..+...
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46999999999999999999864

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=91.27  E-value=0.097  Score=46.82  Aligned_cols=23  Identities=22%  Similarity=0.436  Sum_probs=20.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -.|++.|++|+|||+|+..++..
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            36899999999999999999864

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=91.26  E-value=0.089  Score=49.57  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=21.0

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .-+.|.||.|+||||+++.++..
T Consensus        21 ~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           21 FTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            45889999999999999999987

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=91.26  E-value=0.098  Score=47.00  Aligned_cols=23  Identities=30%  Similarity=0.471  Sum_probs=20.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -.|++.|++|+|||+|++.+...
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            46999999999999999999873

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=91.25  E-value=0.12  Score=46.23  Aligned_cols=23  Identities=17%  Similarity=0.381  Sum_probs=20.9

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -.|++.|++|+|||+|+.++...
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999999875

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=91.24  E-value=0.1  Score=46.07  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=20.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..+++.|++|+|||+|++.+...
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            36999999999999999999864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=91.23  E-value=0.089  Score=47.03  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -.+++.|++|+|||+|++.+...
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999874

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=91.23  E-value=0.1  Score=46.03  Aligned_cols=23  Identities=22%  Similarity=0.485  Sum_probs=20.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..|++.|++|+|||+|++.+...
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            46999999999999999999863

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=91.18  E-value=0.27  Score=47.66  Aligned_cols=23  Identities=35%  Similarity=0.466  Sum_probs=20.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..++|.|.||+|||+|..++...
T Consensus         4 ~~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            4 LTIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999874

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=91.16  E-value=0.092  Score=49.38  Aligned_cols=25  Identities=32%  Similarity=0.384  Sum_probs=22.2

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      .-|.|.|++|+||||+++.+++.+.
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3578899999999999999999883

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=91.06  E-value=0.085  Score=46.96  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=20.0

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .+++.|++|+|||+|++.+...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            5899999999999999999874

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=91.05  E-value=0.1  Score=46.02  Aligned_cols=23  Identities=30%  Similarity=0.426  Sum_probs=20.6

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      -.+|+||.|+|||++..+|.-.+
T Consensus        25 ~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            46899999999999999998766

>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}

Probab=91.02  E-value=0.29  Score=50.52  Aligned_cols=16  Identities=25%  Similarity=0.528  Sum_probs=14.6

Q ss_pred             ceeeeeCCCCChhHHH
Q 010975          250 KGILLFGPPGTGKTML  265 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~L  265 (496)
                      +.+++.+|+|+|||..
T Consensus        94 ~d~i~~a~TGsGKT~a  109 (434)
T 2db3_A           94 RDLMACAQTGSGKTAA  109 (434)
T ss_dssp             CCEEEECCTTSSHHHH
T ss_pred             CCEEEECCCCCCchHH
Confidence            6799999999999984

>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A

Probab=91.00  E-value=0.39  Score=55.98  Aligned_cols=21  Identities=29%  Similarity=0.463  Sum_probs=17.0

Q ss_pred             cceeeeeCCCCChhHHHHHHH
Q 010975          249 WKGILLFGPPGTGKTMLAKAV  269 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAral  269 (496)
                      .+.+++.+|+|+|||..+-..
T Consensus        93 g~dvlv~ApTGSGKTl~~l~~  113 (1104)
T 4ddu_A           93 GKSFTMVAPTGVGKTTFGMMT  113 (1104)
T ss_dssp             TCCEEECCSTTCCHHHHHHHH
T ss_pred             CCCEEEEeCCCCcHHHHHHHH
Confidence            367999999999999955444

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=90.99  E-value=0.097  Score=46.46  Aligned_cols=23  Identities=30%  Similarity=0.472  Sum_probs=20.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..+++.|++|+|||+|++.+...
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999999764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=90.95  E-value=0.11  Score=46.21  Aligned_cols=23  Identities=30%  Similarity=0.458  Sum_probs=20.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..+++.|++|+|||+|++.+...
T Consensus        19 ~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           19 LRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            57999999999999999999864

>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}

Probab=90.94  E-value=0.25  Score=51.48  Aligned_cols=23  Identities=26%  Similarity=0.273  Sum_probs=17.6

Q ss_pred             cceeeeeCCCCChhHHHH-HHHHh
Q 010975          249 WKGILLFGPPGTGKTMLA-KAVAT  271 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LA-ralA~  271 (496)
                      ++.+++.||+|+|||..+ -.+..
T Consensus       131 ~~~~l~~a~TGsGKT~~~~l~il~  154 (479)
T 3fmp_B          131 PQNLIAQSQSGTGKTAAFVLAMLS  154 (479)
T ss_dssp             CCEEEEECCSSSSHHHHHHHHHHT
T ss_pred             CCcEEEEcCCCCchhHHHHHHHHH
Confidence            368999999999999863 33443

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=90.94  E-value=0.12  Score=45.60  Aligned_cols=23  Identities=30%  Similarity=0.426  Sum_probs=20.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -.+++.|++|+|||+|++.+...
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            46999999999999999999763

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=90.92  E-value=0.11  Score=45.92  Aligned_cols=23  Identities=26%  Similarity=0.296  Sum_probs=20.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -.+++.|++|+|||+|++.+...
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999999753

>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}

Probab=90.87  E-value=0.41  Score=47.03  Aligned_cols=18  Identities=28%  Similarity=0.307  Sum_probs=15.6

Q ss_pred             cceeeeeCCCCChhHHHH
Q 010975          249 WKGILLFGPPGTGKTMLA  266 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LA  266 (496)
                      ++++++.+|+|+|||...
T Consensus       131 ~~~~l~~a~TGsGKT~a~  148 (300)
T 3fmo_B          131 PQNLIAQSQSGTGKTAAF  148 (300)
T ss_dssp             CCCEEEECCTTSSHHHHH
T ss_pred             CCeEEEECCCCCCccHHH
Confidence            478999999999999753

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=90.84  E-value=0.12  Score=45.69  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=20.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -.+++.|++|+|||+|++.+...
T Consensus        19 ~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           19 YKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999864

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=90.82  E-value=0.21  Score=55.85  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..++|+||.|+||||+.|.++..
T Consensus       577 ~i~~I~GpNGsGKSTlLr~iagl  599 (765)
T 1ewq_A          577 ELVLITGPNMAGKSTFLRQTALI  599 (765)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHHhh
Confidence            45889999999999999999874

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=90.72  E-value=0.12  Score=46.37  Aligned_cols=23  Identities=30%  Similarity=0.374  Sum_probs=20.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..+++.|++|+|||+|++.+...
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999999764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=90.69  E-value=0.11  Score=46.20  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..+++.|++|+|||+|++.+...
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999999775

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=90.68  E-value=0.19  Score=47.68  Aligned_cols=32  Identities=19%  Similarity=0.283  Sum_probs=25.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh--cceeeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC--KTTFFNIS  281 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l--~~~~i~v~  281 (496)
                      ..+++.|.+|+||||++..+|..+  +.++..++
T Consensus        15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd   48 (262)
T 1yrb_A           15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN   48 (262)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence            458899999999999999999765  55555554

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=90.64  E-value=0.12  Score=45.55  Aligned_cols=23  Identities=22%  Similarity=0.236  Sum_probs=20.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -.+++.|++|+|||+|++.+...
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46999999999999999999863

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=90.63  E-value=0.095  Score=46.25  Aligned_cols=23  Identities=22%  Similarity=0.284  Sum_probs=20.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -.+++.|++|+|||+|++.+...
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999999864

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=90.61  E-value=0.12  Score=46.66  Aligned_cols=23  Identities=22%  Similarity=0.485  Sum_probs=20.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..|++.|++|+|||+|+..+...
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999999753

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=90.60  E-value=0.12  Score=46.42  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=19.6

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .++|.|++|+|||+|++.+...
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5999999999999999887764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=90.60  E-value=0.12  Score=46.79  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=20.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHh
Q 010975          250 KGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~  271 (496)
                      ..+++.|++|+|||+|++.+..
T Consensus        24 ~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           24 GKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            4699999999999999999986

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=90.59  E-value=0.12  Score=46.40  Aligned_cols=22  Identities=27%  Similarity=0.524  Sum_probs=19.9

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .|++.|++|+|||+|++.+...
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            5999999999999999998763

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=90.58  E-value=0.12  Score=46.21  Aligned_cols=23  Identities=35%  Similarity=0.522  Sum_probs=20.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..|++.|++|+|||+|++++...
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46999999999999999999874

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=90.57  E-value=0.12  Score=46.78  Aligned_cols=23  Identities=30%  Similarity=0.374  Sum_probs=20.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..|++.|++|+|||+|++.+...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46999999999999999999764

>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=90.56  E-value=0.17  Score=56.96  Aligned_cols=22  Identities=41%  Similarity=0.675  Sum_probs=17.8

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .+++.||||||||+++..+...
T Consensus       377 ~~lI~GppGTGKT~~i~~~i~~  398 (802)
T 2xzl_A          377 LSLIQGPPGTGKTVTSATIVYH  398 (802)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5799999999999877666543

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=90.54  E-value=0.13  Score=46.50  Aligned_cols=24  Identities=25%  Similarity=0.461  Sum_probs=21.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ..|++.|++|+|||+|++.+...-
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            469999999999999999997643

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=90.53  E-value=0.13  Score=49.51  Aligned_cols=28  Identities=21%  Similarity=0.273  Sum_probs=24.5

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFF  278 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i  278 (496)
                      -+.|+|++|+||||+++.+...+|.+++
T Consensus         3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~~   30 (241)
T 1dek_A            3 LIFLSGVKRSGKDTTADFIMSNYSAVKY   30 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSCEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence            3679999999999999999998887753

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=90.45  E-value=0.098  Score=46.30  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=20.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHh
Q 010975          250 KGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~  271 (496)
                      ..+++.|++|+|||+|+..+..
T Consensus        19 ~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           19 LRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            5799999999999999999874

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=90.45  E-value=0.16  Score=50.21  Aligned_cols=24  Identities=25%  Similarity=0.385  Sum_probs=20.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      .-+.|.||+|+|||||+++++ ...
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            457899999999999999999 553

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=90.44  E-value=0.13  Score=52.47  Aligned_cols=27  Identities=22%  Similarity=0.236  Sum_probs=23.1

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||+|+|||||++.++...
T Consensus        52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           52 PAGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            444568899999999999999999865

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=90.44  E-value=0.13  Score=45.95  Aligned_cols=23  Identities=30%  Similarity=0.510  Sum_probs=20.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..|++.|++|+|||+|++.+...
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999999764

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=90.41  E-value=0.16  Score=50.76  Aligned_cols=29  Identities=24%  Similarity=0.360  Sum_probs=24.0

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFF  278 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i  278 (496)
                      ..+++|.|++|+|||++|.++... |..++
T Consensus       144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv  172 (314)
T 1ko7_A          144 GVGVLITGDSGIGKSETALELIKR-GHRLV  172 (314)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence            468999999999999999999875 44443

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.41  E-value=0.15  Score=46.06  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=20.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..+++.|++|+|||+|++.+...
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999999864

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=90.36  E-value=0.12  Score=46.33  Aligned_cols=23  Identities=48%  Similarity=0.619  Sum_probs=20.9

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..+++.|++|+|||+|++.+...
T Consensus        17 ~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           17 VRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46999999999999999999875

>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}

Probab=90.34  E-value=0.51  Score=47.42  Aligned_cols=18  Identities=28%  Similarity=0.326  Sum_probs=15.4

Q ss_pred             ceeeeeCCCCChhHHHHH
Q 010975          250 KGILLFGPPGTGKTMLAK  267 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAr  267 (496)
                      +.+++.+|+|+|||..+-
T Consensus        78 ~~~lv~a~TGsGKT~~~~   95 (414)
T 3eiq_A           78 YDVIAQAQSGTGKTATFA   95 (414)
T ss_dssp             CCEEECCCSCSSSHHHHH
T ss_pred             CCEEEECCCCCcccHHHH
Confidence            569999999999998743

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=90.33  E-value=0.13  Score=54.12  Aligned_cols=25  Identities=24%  Similarity=0.401  Sum_probs=22.2

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ..-+.|.||.|+|||||+|.|+...
T Consensus       138 Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          138 GPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCcc
Confidence            3568999999999999999999865

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=90.32  E-value=0.13  Score=46.10  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=20.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..|++.|++|+|||+|++.+...
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999999863

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=90.28  E-value=0.14  Score=45.90  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=20.0

Q ss_pred             ceeeeeCCCCChhHHHHHHHHh
Q 010975          250 KGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~  271 (496)
                      ..|++.|++|+|||+|++.+..
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            4699999999999999999975

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.27  E-value=0.12  Score=46.40  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=21.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      -.|+|.|++|+|||+|++.+...-
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhcCC
Confidence            369999999999999999998744

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=90.26  E-value=0.14  Score=46.16  Aligned_cols=23  Identities=30%  Similarity=0.354  Sum_probs=20.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -.+++.|++|+|||+|++.+...
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            46999999999999999999874

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=90.25  E-value=0.12  Score=46.37  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=20.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..|++.|++|+|||+|++.+...
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            46999999999999999999763

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=90.25  E-value=0.12  Score=45.60  Aligned_cols=22  Identities=23%  Similarity=0.372  Sum_probs=20.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHh
Q 010975          250 KGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~  271 (496)
                      ..+++.|++|+|||+|++.+..
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            4699999999999999999984

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=90.23  E-value=0.13  Score=46.43  Aligned_cols=23  Identities=22%  Similarity=0.426  Sum_probs=20.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -.|++.|++|+|||+|++.+...
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            36999999999999999999764

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=90.22  E-value=0.14  Score=46.04  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=20.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -.+++.|++|+|||+|++.+...
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            35999999999999999999863

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=90.20  E-value=0.14  Score=48.18  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=21.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ..|+|.|++|+|||+|+.++....
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHcCCC
Confidence            469999999999999999998743

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=90.18  E-value=0.11  Score=55.35  Aligned_cols=22  Identities=32%  Similarity=0.472  Sum_probs=19.3

Q ss_pred             ccceeeeeCCCCChhHHHHHHH
Q 010975          248 PWKGILLFGPPGTGKTMLAKAV  269 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAral  269 (496)
                      +...++|.||+|+|||||++.+
T Consensus        38 ~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           38 IGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHH
Confidence            4456999999999999999994

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=90.15  E-value=0.14  Score=46.40  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=20.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..|++.|++|+|||+|++.+...
T Consensus        29 ~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           29 YKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            46999999999999999999763

>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}

Probab=90.14  E-value=0.44  Score=49.90  Aligned_cols=23  Identities=26%  Similarity=0.573  Sum_probs=18.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      +++++.+|+|+|||..+-..+.+
T Consensus        20 ~~~l~~~~tGsGKT~~~~~~~~~   42 (555)
T 3tbk_A           20 KNTIICAPTGCGKTFVSLLICEH   42 (555)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHH
Confidence            57999999999999876655543

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.05  E-value=0.16  Score=45.63  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=20.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHh
Q 010975          250 KGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~  271 (496)
                      ..|++.|++|+|||+|++++..
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHc
Confidence            4699999999999999999976

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=90.02  E-value=0.13  Score=46.73  Aligned_cols=23  Identities=30%  Similarity=0.501  Sum_probs=20.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..|++.|++|+|||+|+..+...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46999999999999999999763

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=89.99  E-value=0.15  Score=46.46  Aligned_cols=23  Identities=35%  Similarity=0.538  Sum_probs=20.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..|++.|++|+|||+|+.++...
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999999853

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=89.92  E-value=0.14  Score=51.17  Aligned_cols=29  Identities=31%  Similarity=0.401  Sum_probs=23.1

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhhccee
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATECKTTF  277 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l~~~~  277 (496)
                      ...++||.|++|+|||++|-.+... |..+
T Consensus       146 ~g~gvli~G~sG~GKStlal~l~~~-G~~l  174 (312)
T 1knx_A          146 FGVGVLLTGRSGIGKSECALDLINK-NHLF  174 (312)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT-TCEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc-CCEE
Confidence            3478999999999999999888663 4443

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=89.91  E-value=0.16  Score=45.40  Aligned_cols=22  Identities=18%  Similarity=0.372  Sum_probs=20.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHh
Q 010975          250 KGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~  271 (496)
                      ..+++.|++|+|||+|++.+..
T Consensus        17 ~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           17 HKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999999985

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=89.83  E-value=0.15  Score=53.12  Aligned_cols=21  Identities=33%  Similarity=0.526  Sum_probs=19.7

Q ss_pred             eeeeCCCCChhHHHHHHHHhh
Q 010975          252 ILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~  272 (496)
                      +.|.||+|+|||||++.|+..
T Consensus        45 vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           45 ILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             EEEECSTTSSSHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCc
Confidence            789999999999999999875

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=89.82  E-value=0.14  Score=46.50  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=21.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ..++|.|++|+|||+|++.+...-
T Consensus        25 ~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           25 RKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            469999999999999999998743

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=89.80  E-value=0.22  Score=46.04  Aligned_cols=29  Identities=21%  Similarity=0.185  Sum_probs=23.7

Q ss_pred             eeeeCCCCChhHHHHHHHHhhh---cceeeee
Q 010975          252 ILLFGPPGTGKTMLAKAVATEC---KTTFFNI  280 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l---~~~~i~v  280 (496)
                      |.|.|+-|+||||.++.+++.+   |.+++..
T Consensus         3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t   34 (197)
T 3hjn_A            3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK   34 (197)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            5678999999999999999988   4555443

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=89.79  E-value=0.17  Score=52.53  Aligned_cols=22  Identities=18%  Similarity=0.397  Sum_probs=20.2

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .+.|.||+|+|||||.++++..
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5789999999999999999984

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=89.79  E-value=0.2  Score=52.38  Aligned_cols=25  Identities=28%  Similarity=0.437  Sum_probs=22.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      .-+.|.||+|+|||||++.|+....
T Consensus       158 q~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          158 QRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccC
Confidence            4588999999999999999999874

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=89.75  E-value=0.11  Score=47.26  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=20.0

Q ss_pred             ceeeeeCCCCChhHHHHHHHHh
Q 010975          250 KGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~  271 (496)
                      ..+++.|++|+|||+|++.+..
T Consensus        26 ~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           26 GKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            4589999999999999999975

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=89.74  E-value=0.18  Score=51.03  Aligned_cols=26  Identities=23%  Similarity=0.411  Sum_probs=23.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKT  275 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~  275 (496)
                      .-+.|.||+|+|||||++.|+.....
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~~~~   97 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNGASA   97 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            45899999999999999999998743

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=89.73  E-value=0.1  Score=46.29  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=10.0

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..+++.|++|+|||+|++.+...
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEEECCCCC------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999998753

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=89.70  E-value=0.16  Score=46.08  Aligned_cols=22  Identities=36%  Similarity=0.573  Sum_probs=19.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHh
Q 010975          250 KGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~  271 (496)
                      -.++|.|+||+|||+|...+..
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            3589999999999999999985

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=89.68  E-value=0.14  Score=47.01  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..+++.|++|+|||+|++.+...
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            36999999999999999999874

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=89.67  E-value=0.16  Score=51.74  Aligned_cols=25  Identities=24%  Similarity=0.312  Sum_probs=21.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      ..+.|.||+|+|||||+++|+....
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CEEEEECCCCccHHHHHHHHhcccc
Confidence            4588999999999999999997554

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=89.67  E-value=0.18  Score=50.96  Aligned_cols=24  Identities=29%  Similarity=0.455  Sum_probs=21.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ..+.|.|+||+|||||.++++..+
T Consensus        75 ~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           75 FRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            458899999999999999999754

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=89.59  E-value=0.14  Score=46.64  Aligned_cols=22  Identities=32%  Similarity=0.528  Sum_probs=19.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHh
Q 010975          250 KGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~  271 (496)
                      ..+++.|++|+|||+|++.+..
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTCC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            3589999999999999999964

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=89.53  E-value=0.17  Score=46.18  Aligned_cols=23  Identities=30%  Similarity=0.465  Sum_probs=20.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..+++.|++|+|||+|+..+...
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46999999999999999999864

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=89.51  E-value=0.35  Score=49.11  Aligned_cols=23  Identities=26%  Similarity=0.304  Sum_probs=20.1

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+.|.|+||+|||||.++++...
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~  203 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLT  203 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            48899999999999999998753

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=89.51  E-value=0.15  Score=46.77  Aligned_cols=23  Identities=35%  Similarity=0.530  Sum_probs=20.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..++|.|++|+|||+|++.+...
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            46999999999999999998763

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=89.51  E-value=0.16  Score=45.89  Aligned_cols=23  Identities=30%  Similarity=0.351  Sum_probs=20.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..+++.|++|+|||+|++.+...
T Consensus        21 ~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC-
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999999753

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=89.49  E-value=0.074  Score=50.61  Aligned_cols=23  Identities=30%  Similarity=0.280  Sum_probs=20.6

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      -+.|.||+|+||||+.++|+..+
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g~~   51 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTAL   51 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            35789999999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	496
d1ixza_	247	c.37.1.20 (A:) AAA domain of cell division protein	5e-82
d1lv7a_	256	c.37.1.20 (A:) AAA domain of cell division protein	4e-79
d1r7ra3	265	c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p	5e-63
d1e32a2	258	c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p	7e-51
d1w44a_	321	c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta	6e-36
d1svma_	362	c.37.1.20 (A:) Papillomavirus large T antigen heli	1e-26
d1d2na_	246	c.37.1.20 (A:) Hexamerization domain of N-ethylmal	2e-25
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	1e-22
d1ofha_	309	c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId	8e-20
d1ixsb2	239	c.37.1.20 (B:4-242) Holliday junction helicase Ruv	1e-13
d1fnna2	276	c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob	1e-11
d1in4a2	238	c.37.1.20 (A:17-254) Holliday junction helicase Ru	4e-11
d1r6bx2	268	c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, A	2e-08
d1w5sa2	287	c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t	2e-07
d1g41a_	443	c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId	6e-07
d1sxja2	253	c.37.1.20 (A:295-547) Replication factor C1 {Baker	1e-06
d1g8pa_	333	c.37.1.20 (A:) ATPase subunit of magnesium chelata	8e-06
d1sxje2	252	c.37.1.20 (E:4-255) Replication factor C5 {Baker's	1e-04
d1qvra2	387	c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus	2e-04
d1lw7a2	192	c.37.1.1 (A:220-411) Transcriptional regulator Nad	2e-04
d1um8a_	364	c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 2	6e-04
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	0.001
d2fnaa2	283	c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo	0.002
d1ny5a2	247	c.37.1.20 (A:138-384) Transcriptional activator si	0.002

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

 Score =  252 bits (646), Expect = 5e-82
 Identities = 88/247 (35%), Positives = 132/247 (53%), Gaps = 12/247 (4%)

Query: 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKA 268
           +P V ++ + G E AK  LKE V   +K P  F  +     KG+LL GPPG GKT LA+A
Sbjct: 3   APKVTFKDVAGAEEAKEELKEIV-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 61

Query: 269 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 328
           VA E +  F   S S  V  + G     ++ LFE A+ HAP  +F+DEIDA+  +RG   
Sbjct: 62  VAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV 121

Query: 329 -SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPD 385
              ++   +   +LL++MDG  + D  + V+AATN P  LD A+LR  R +++I +  PD
Sbjct: 122 GGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 180

Query: 386 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 445
            + R  +       +   E +   LL +RT G+ G+D+  +  EAA+   R      EGR
Sbjct: 181 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR------EGR 234

Query: 446 QEVAPDD 452
           +++   D
Sbjct: 235 RKITMKD 241

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

 Score =  245 bits (627), Expect = 4e-79
 Identities = 81/246 (32%), Positives = 129/246 (52%), Gaps = 12/246 (4%)

Query: 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 269
               +  + G + AK  + E V   ++ P  F  L     KG+L+ GPPGTGKT+LAKA+
Sbjct: 7   IKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAI 65

Query: 270 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR- 328
           A E K  FF IS S  V  + G     ++ +FE A+  AP  IF+DEIDA+  QRG    
Sbjct: 66  AGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLG 125

Query: 329 SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDT 386
             H+   +   ++L++MDG  + +E + V+AATN P  LD A+LR  R +++++V LPD 
Sbjct: 126 GGHDEREQTLNQMLVEMDGF-EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 184

Query: 387 EARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQ 446
             R  + +  +        +   ++   T G+SG+D+  +  EAA+   R        ++
Sbjct: 185 RGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG------NKR 238

Query: 447 EVAPDD 452
            V+  +
Sbjct: 239 VVSMVE 244

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  204 bits (519), Expect = 5e-63
 Identities = 93/261 (35%), Positives = 152/261 (58%), Gaps = 15/261 (5%)

Query: 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 269
           P V WE I GLE+ KR L+E V  P+++P  F    ++P KG+L +GPPG GKT+LAKA+
Sbjct: 2   PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 61

Query: 270 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 329
           A EC+  F +I    +++ W G+SE  ++ +F+ AR  AP  +F DE+D+I   RG    
Sbjct: 62  ANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIG 121

Query: 330 E-HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDT 386
           +   A+ R+  ++L +MDG++     VF++ ATN P  +D A+LR  RL++ I +PLPD 
Sbjct: 122 DGGGAADRVINQILTEMDGMSTKKN-VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 180

Query: 387 EARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM--VLLEG 444
           ++R A+ ++ L      + +  + L + T G+SG+D+  + + A    +R  +   +   
Sbjct: 181 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 240

Query: 445 RQ--------EVAPDDELPQI 457
           R+        EV  DD +P+I
Sbjct: 241 RERQTNPSAMEVEEDDPVPEI 261

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  172 bits (435), Expect = 7e-51
 Identities = 86/261 (32%), Positives = 146/261 (55%), Gaps = 7/261 (2%)

Query: 213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVAT 271
           V ++ + G       +KE V +P+++P  F  + + P +GILL+GPPGTGKT++A+AVA 
Sbjct: 1   VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 60

Query: 272 ECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEH 331
           E    FF I+   ++SK  G+SE  ++  FE A  +AP+ IF+DE+DAI  +R   ++  
Sbjct: 61  ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE--KTHG 118

Query: 332 EASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEAR 389
           E  RR+ ++LL  MDGL Q    V V+AATN P  +D A+ R  R ++ + + +PD   R
Sbjct: 119 EVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 177

Query: 390 RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA 449
             + +    +    + +  + +   T G+ G+D+  +  EAA+Q +R+ M L++   E  
Sbjct: 178 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI 237

Query: 450 PDDELPQIGPIRPEDVEIALK 470
             + +  +  +  +D   AL 
Sbjct: 238 DAEVMNSL-AVTMDDFRWALS 257

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

 Score =  133 bits (336), Expect = 6e-36
 Identities = 31/202 (15%), Positives = 59/202 (29%), Gaps = 17/202 (8%)

Query: 209 GSPDVKWESIKGLENAKRLLKEAVV--MPIKYPKYFTGLLS-PWKGILLF-GPPGTGKTM 264
           GS  V       ++   R     +   +    P            G+++  G   +GKT 
Sbjct: 79  GSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTP 138

Query: 265 LAKAVATEC--KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 322
           L  A+      K  +  +     +S +  D    +  +      H    I +D +  +I 
Sbjct: 139 LVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196

Query: 323 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE----LDAAMLR--RLE 376
                 +      R   +LL  +  +  S     V+A+ N P      +   +    R  
Sbjct: 197 AA-GGNTTSGGISRGAFDLLSDIGAMAAS-RGCVVIASLN-PTSNDDKIVELVKEASRSN 253

Query: 377 KRILVPLPDTEARRAMFESLLP 398
              LV   D +    +      
Sbjct: 254 STSLVISTDVDGEWQVLTRTGE 275

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

 Score =  108 bits (271), Expect = 1e-26
 Identities = 36/235 (15%), Positives = 66/235 (28%), Gaps = 27/235 (11%)

Query: 214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 273
           +W +   +     LL +   +   + K     +   +  L  GP  +GKT LA A+   C
Sbjct: 121 EWMAG--VAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 178

Query: 274 KTTFFNISASSVVSK-WRGDSEKLIKVLFELA------RHHAPSTIFLDEIDAIISQRGE 326
                N++          G +     V+FE            PS   ++ +D +      
Sbjct: 179 GGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDG 238

Query: 327 ARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 383
           +     E     K   +               +   N   E         R  K+I    
Sbjct: 239 SVKVNLEKKHLNKRTQIFPP-----------GIVTMN---EYSVPKTLQARFVKQIDFRP 284

Query: 384 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 438
            D           L  +   +S    LL+        ++     +   ++   RL
Sbjct: 285 KDYLKHCLERSEFLLEKRIIQS-GIALLLMLIWYRPVAEFAQSIQSRIVEWKERL 338

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score =  102 bits (254), Expect = 2e-25
 Identities = 46/261 (17%), Positives = 95/261 (36%), Gaps = 27/261 (10%)

Query: 198 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGP 257
            A  +   II+    V     + L++ + L+++                +P   +LL GP
Sbjct: 3   YASYIMNGIIKWGDPVT----RVLDDGELLVQQT----------KNSDRTPLVSVLLEGP 48

Query: 258 PGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDE 316
           P +GKT LA  +A E    F  I +   +  +   ++ + +K +F+ A     S + +D+
Sbjct: 49  PHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDD 108

Query: 317 IDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR-RL 375
           I+ ++            S  +   LL+ +         + ++  T+    L    +    
Sbjct: 109 IERLLDYV---PIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAF 165

Query: 376 EKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS---GSDIRLVSKEAAM 432
              I V  P+      + E+L       +      + ++ +G     G    L+  E ++
Sbjct: 166 STTIHV--PNIATGEQLLEALELLGN-FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 222

Query: 433 Q--PLRRLMVLLEGRQEVAPD 451
           Q  P  R+   L   +E    
Sbjct: 223 QMDPEYRVRKFLALLREEGAS 243

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 95.4 bits (236), Expect = 1e-22
 Identities = 26/275 (9%), Positives = 67/275 (24%), Gaps = 37/275 (13%)

Query: 228 LKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV- 286
            +  +   ++        +      LL G PG+GKT L  A+  E +     I   +   
Sbjct: 11  FENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ 70

Query: 287 --SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 344
               +    +   K + +    ++                         +  +  +    
Sbjct: 71  QHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATM 130

Query: 345 MDGLTQSDEL--------VFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFE 394
           +       ++           L        + A      R   +    +        +  
Sbjct: 131 LQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLET 190

Query: 395 SLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDEL 454
                   +  L      E  + YS  +   +S +  ++                     
Sbjct: 191 LHKTGLFSDIRL---YNREGVKLYSSLETPSISPKETLEKELN----------------- 230

Query: 455 PQIGPIRPEDVEIALKNTRPSAHLHAHR-YEKFNA 488
                +  ++++  L+       L+ H+   +F A
Sbjct: 231 ---RKVSGKEIQPTLERIEQKMVLNKHQETPEFKA 262

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

 Score = 88.0 bits (217), Expect = 8e-20
 Identities = 55/285 (19%), Positives = 103/285 (36%), Gaps = 32/285 (11%)

Query: 216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATEC 273
           + I G  +AKR +  A+    +  +    L      K IL+ GP G GKT +A+ +A   
Sbjct: 14  QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 73

Query: 274 KTTFFNISASSV--VSKWRGDSEKLIKVLFELA-----RHHAPSTIFLDEIDAIISQRGE 326
              F  + A+    V     + + +I+ L + A            +F+DEID  I ++GE
Sbjct: 74  NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDK-ICKKGE 132

Query: 327 ARSEHEASRRLKTELLIQMDGLTQSD--------ELVFVLAA---TNLPWELDAAMLRRL 375
                 +   ++ +LL  ++G T S          ++F+ +       P +L   +  RL
Sbjct: 133 YSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRL 192

Query: 376 EKRILVPLPDTEARRA----MFESLLPSQ-----TGEESLPYDLLVERTEGYSGSDIRLV 426
             R+ +                 SL         T   ++ +     +    +   +   
Sbjct: 193 PIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEK 252

Query: 427 SKEAAMQPLRRLM-VLLEGRQEVAPDDELPQIGPIRPEDVEIALK 470
           ++    + L  +M  L++     A D     +  I    V  AL 
Sbjct: 253 TENIGARRLHTVMERLMDKISFSASDMNGQTVN-IDAAYVADALG 296

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

 Score = 68.4 bits (166), Expect = 1e-13
 Identities = 42/219 (19%), Positives = 71/219 (32%), Gaps = 23/219 (10%)

Query: 214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 273
             +   G E  K+ L+  +       +       P + +LLFGPPG GKT LA  +A E 
Sbjct: 7   TLDEYIGQERLKQKLRVYLEAAKARKE-------PLEHLLLFGPPGLGKTTLAHVIAHEL 59

Query: 274 KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEA 333
                  S  ++       +                  +F+DEI  +  Q  E       
Sbjct: 60  GVNLRVTSGPAIEKPGDLAA-------ILANSLEEGDILFIDEIHRLSRQAEEHLYPAME 112

Query: 334 SRRLK---TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEA 388
              +     +         +      + A T  P  + A +L    + + +    P+  A
Sbjct: 113 DFVMDIVIGQGPAARTIRLELPRFTLIGATTR-PGLITAPLLSRFGIVEHLEYYTPEELA 171

Query: 389 RRAM-FESLLPSQTGEESLPYDLLVERTEGYSGSDIRLV 426
           +  M    LL  +  EE+     +  R+ G      RL 
Sbjct: 172 QGVMRDARLLGVRITEEAA--LEIGRRSRGTMRVAKRLF 208

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 63.3 bits (152), Expect = 1e-11
 Identities = 36/262 (13%), Positives = 69/262 (26%), Gaps = 25/262 (9%)

Query: 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV 269
           SP    + +   E   + L   +   ++ P         +    L G PGTGKT+  + +
Sbjct: 10  SPSYVPKRLPHREQQLQQLDILLGNWLRNPG------HHYPRATLLGRPGTGKTVTLRKL 63

Query: 270 ATECK----TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG 325
               K      F  I+     +      E    +     R       FL  +   + +R 
Sbjct: 64  WELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERD 123

Query: 326 EARSEHEA-------SRRLKTELLIQMDGLTQSDELVFVLAATNLPW---ELDAAMLRRL 375
                                  L Q      +  +  V+   N         +      
Sbjct: 124 LYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMG 183

Query: 376 EKRILVPLPDTEARRAMFESLL---PSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAM 432
           +  I       +    +         ++         ++ + T   +  D        A+
Sbjct: 184 KYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAI 243

Query: 433 QPLRR--LMVLLEGRQEVAPDD 452
             L R        GR+ +AP+D
Sbjct: 244 DILYRSAYAAQQNGRKHIAPED 265

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

 Score = 60.8 bits (146), Expect = 4e-11
 Identities = 43/225 (19%), Positives = 80/225 (35%), Gaps = 23/225 (10%)

Query: 214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 273
             +   G EN K+ L  A+       +           +LL GPPG GKT LA  +A+E 
Sbjct: 7   SLDEFIGQENVKKKLSLALEAAKMRGEVL-------DHVLLAGPPGLGKTTLAHIIASEL 59

Query: 274 KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEA 333
           +T     S   +V +  GD   ++              +F+DEI  +     E    + A
Sbjct: 60  QTNIHVTSGPVLVKQ--GDMAAILT------SLERGDVLFIDEIHRLNKAVEELL--YSA 109

Query: 334 SRRLKTELLIQMDGLTQSDEL----VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEAR 389
               + +++I      +S  +      ++ AT     L + +  R    + +     +  
Sbjct: 110 IEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKEL 169

Query: 390 RAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAAMQ 433
           + + +        E      +++ +R+ G     IRL  K     
Sbjct: 170 KEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLT-KRVRDM 213

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

 Score = 52.7 bits (126), Expect = 2e-08
 Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 23/167 (13%)

Query: 247 SPWKGILLFGPPGTGKTMLAKAVA------------TECKTTFFNISASSVVSKWRGDSE 294
                 LL G  G GKT +A+ +A             +C     +I +    +K+RGD E
Sbjct: 37  RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 96

Query: 295 KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL---IQMDGLTQS 351
           K  K L +       S +F+DEI  II     +  + +A+  +K  L    I++ G T  
Sbjct: 97  KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTY 156

Query: 352 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP 398
            E   +        E D A+ RR +K  +   P  E    +   L P
Sbjct: 157 QEFSNIF-------EKDRALARRFQKIDITE-PSIEETVQIINGLKP 195

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

 Score = 50.5 bits (119), Expect = 2e-07
 Identities = 28/275 (10%), Positives = 65/275 (23%), Gaps = 49/275 (17%)

Query: 216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT 275
             ++        L    +  +      +            G  G GKT LAK        
Sbjct: 16  PELRVRRGEAEALARIYLNRLLSGAGLS---DVNMIYGSIGRVGIGKTTLAKFTVKRVSE 72

Query: 276 TFFNISASSVVSKWRG--------------------------DSEKLIKVLFEL-ARHHA 308
                  +   +                               +  ++K L +     + 
Sbjct: 73  AAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENH 132

Query: 309 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL- 367
              + LDE  +++S    A  +     R+  E+  +          + V +       + 
Sbjct: 133 YLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG--VNRIGFLLVASDVRALSYMR 190

Query: 368 --DAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYD---LLVERTEGYSGS- 421
                +  ++  ++ +P   +     + E        +         L+ +      G  
Sbjct: 191 EKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGD 250

Query: 422 ----DIRLVSKEAAMQPLRRLMVLLEGRQEVAPDD 452
                  +  K A             GR  ++ D 
Sbjct: 251 GSARRAIVALKMACEMAEA------MGRDSLSEDL 279

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

 Score = 49.4 bits (117), Expect = 6e-07
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 220 GLENAKRLLKEAVVMPIKYPKYFTGLLSP--WKGILLFGPPGTGKTMLAKAVATECKTTF 277
           G  +AKR +  A+    +  +    L      K IL+ GP G GKT +A+ +A      F
Sbjct: 18  GQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 77

Query: 278 FNISASSVVSKWRG----DSEKLIKVLFELARHH 307
             + A+       G    + + +I+ L + A   
Sbjct: 78  IKVEATKFT--EVGYVGKEVDSIIRDLTDSAMKL 109

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 214 KWESIKGLENAKRLLKEAVVM-----PIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKA 268
             + + G + +   LK  +          +          ++  +L+GPPG GKT  A  
Sbjct: 12  NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHL 71

Query: 269 VATECKTTFFNISASSVVSKWRGDS 293
           VA E        +AS V SK   ++
Sbjct: 72  VAQELGYDILEQNASDVRSKTLLNA 96

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

 Score = 45.3 bits (106), Expect = 8e-06
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 12/54 (22%)

Query: 218 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT 271
           I G E+ K  L    V P        G+     G+L+FG  GTGK+   +A+A 
Sbjct: 9   IVGQEDMKLALLLTAVDP--------GI----GGVLVFGDRGTGKSTAVRALAA 50

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 21/111 (18%), Positives = 30/111 (27%), Gaps = 11/111 (9%)

Query: 214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 273
              ++   E     LK     P   P             LL+GP GTGK     A+    
Sbjct: 9   SLNALSHNEELTNFLKSLSDQPRDLPHL-----------LLYGPNGTGKKTRCMALLESI 57

Query: 274 KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 324
                      V       + KL   +     H   +   +   D I+ Q 
Sbjct: 58  FGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQE 108

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Length = 387

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 25/157 (15%)

Query: 252 ILLFGPPGTGKTMLAKAVA------------TECKTTFFNISASSVVSKWRGD-SEKLIK 298
            +L G PG GKT + + +A               +     + +    +K+RG+  E+L  
Sbjct: 46  PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKA 105

Query: 299 VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 358
           V+ E+ +      +F+DE+  ++   G+A    +A   LK  L           EL  + 
Sbjct: 106 VIQEVVQSQGEVILFIDELHTVVGA-GKAEGAVDAGNMLKPAL--------ARGELRLIG 156

Query: 359 AATNLPWEL---DAAMLRRLEKRILVPLPDTEARRAM 392
           A T   +     D A+ RR +   +      E    +
Sbjct: 157 ATTLDEYREIEKDPALERRFQPVYVDEPTVEETISIL 193

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 11/58 (18%), Positives = 21/58 (36%)

Query: 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHH 307
           K + + G   +GK++L   +A    TT         V +  G  E+ ++         
Sbjct: 8   KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMAL 65

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Length = 364

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

 Score = 39.8 bits (92), Expect = 6e-04
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 6/104 (5%)

Query: 248 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI------SASSVVSKWRGDSEKLIKVLF 301
               ILL GP G+GKT++A+ +A                 A  V         +L++   
Sbjct: 67  SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 126

Query: 302 ELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 345
              +      +F+DEID I           + S     + L+++
Sbjct: 127 WNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 170

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 10/54 (18%), Positives = 20/54 (37%)

Query: 252 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELAR 305
           +LL G PG+GK+ +A+A+A        +  +  +    +               
Sbjct: 7   LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQN 60

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 17/119 (14%), Positives = 30/119 (25%), Gaps = 8/119 (6%)

Query: 235 PIKYPKYFTG-------LLSPWKG-ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 286
           P    K F         L        L+ G   TGK+ + K    E    +  +      
Sbjct: 7   PKDNRKDFFDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFE 66

Query: 287 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 345
            +     +  +  L +           L +    I       +E + +   K  L    
Sbjct: 67  ERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFAN 125

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 18/84 (21%)

Query: 252 ILLFGPPGTGKTMLAKAV--------ATECKTTFFNISASSVVSKWRG-------DSEKL 296
           +L+ G  G GK ++A+ +                 +I      ++  G        +   
Sbjct: 26  VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS 85

Query: 297 IKVLFELARHHAPSTIFLDEIDAI 320
            +  FELA      T+FLDEI  +
Sbjct: 86  KEGFFELADG---GTLFLDEIGEL 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	496
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	100.0
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	100.0
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	100.0
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	100.0
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	99.89
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.88
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	99.87
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	99.82
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	99.78
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	99.78
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	99.76
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	99.72
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	99.71
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	99.71
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	99.69
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	99.69
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.67
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	99.66
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.58
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	99.58
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.54
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	99.51
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.44
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	99.43
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.39
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	99.35
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	99.35
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	99.34
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	99.34
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	99.14
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	99.07
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	98.95
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.63
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.22
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.04
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.0
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.85
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.81
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.79
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.72
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.65
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.63
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.6
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.58
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.58
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.56
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.47
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.42
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.42
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.38
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.37
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.36
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.33
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.3
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.27
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.23
d1tuea_	205	Replication protein E1 helicase domain {Human papi	97.21
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.21
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.21
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.2
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.15
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.14
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.14
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.14
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.13
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.07
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.07
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.95
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.95
d1okkd2	207	GTPase domain of the signal recognition particle r	96.93
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.91
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.78
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.75
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	96.74
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.7
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.7
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	96.61
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.6
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.59
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	96.47
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.45
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.44
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.43
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.41
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.36
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.3
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.24
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.19
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.19
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.06
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	95.99
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	95.93
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	95.93
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.76
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	95.75
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.64
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.57
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.55
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.28
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.28
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.23
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.91
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	94.88
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.73
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.72
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	94.66
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	94.59
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	94.58
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	94.46
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	94.42
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	94.4
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.19
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	94.18
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.15
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	94.15
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.03
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.0
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	94.0
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.97
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	93.91
d2fh5b1	207	Signal recognition particle receptor beta-subunit	93.89
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.78
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	93.63
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	93.63
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	93.58
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	93.44
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.43
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	93.3
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	93.2
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	93.15
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	93.01
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	92.99
d2awna2	232	Maltose transport protein MalK, N-terminal domain	92.97
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	92.96
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	92.92
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.91
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	92.9
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	92.9
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	92.85
d1nrjb_	209	Signal recognition particle receptor beta-subunit	92.85
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.83
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.8
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	92.73
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	92.71
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	92.69
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	92.67
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	92.67
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	92.65
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	92.58
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	92.52
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	92.51
d1g2912	240	Maltose transport protein MalK, N-terminal domain	92.5
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.46
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	92.46
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	92.43
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	92.43
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	92.42
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	92.3
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	92.28
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	92.27
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	92.2
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	92.19
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	92.17
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	92.17
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.16
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	92.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	92.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	91.99
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	91.95
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.9
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	91.84
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	91.8
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	91.8
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	91.74
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	91.73
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	91.64
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.56
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	91.55
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	91.52
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	91.52
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	91.52
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	91.47
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	91.45
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	91.33
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	91.28
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	91.27
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	91.25
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	91.23
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	91.22
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	91.22
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	91.22
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	91.2
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	91.07
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	91.04
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	91.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	90.91
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.72
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	90.71
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	90.66
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	90.63
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	90.54
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	90.42
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	90.4
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	90.4
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	90.25
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	90.23
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	90.2
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	90.18
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	90.17
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	90.06
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	90.0
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	89.9
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	89.9
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	89.86
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	89.74
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	89.74
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	89.45
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	89.42
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	89.41
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	89.23
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	89.1
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	89.01
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	88.93
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	88.72
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	88.37
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	88.21
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	88.11
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	86.74
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	86.62
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	85.81
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	84.96
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	84.94
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	84.88
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	84.87
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	83.11
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	82.82
d1xpua3	289	Transcription termination factor Rho, ATPase domai	82.66
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	82.04
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	82.0
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	81.05

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.3e-41  Score=331.58  Aligned_cols=246  Identities=33%  Similarity=0.523  Sum_probs=214.6

Q ss_pred             hCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975          208 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV  286 (496)
Q Consensus       208 ~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~  286 (496)
                      +..++++|+||+|++++|++|.+.+.. ..+++.+.+. ...++++||+||||||||++|+++|++++.+++.++++++.
T Consensus         4 ~~~~~~t~~Di~Gl~~~k~~l~e~v~~-~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~   82 (256)
T d1lv7a_           4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV   82 (256)
T ss_dssp             ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred             CCCCCCCHHHHhchHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhh
Confidence            467889999999999999999998754 6677777764 67789999999999999999999999999999999999999


Q ss_pred             ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc-chhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc
Q 010975          287 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW  365 (496)
Q Consensus       287 ~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~  365 (496)
                      +.|.|+++..++.+|+.|+.++|+||||||+|.++++++... ..+....+++++|+..+|++... ..|+||+|||+|+
T Consensus        83 ~~~~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~-~~v~vIatTn~~~  161 (256)
T d1lv7a_          83 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPD  161 (256)
T ss_dssp             TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS-SCEEEEEEESCTT
T ss_pred             hcchhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCC-CCEEEEEeCCCcc
Confidence            999999999999999999999999999999999988765432 23344567788999999988654 4589999999999


Q ss_pred             cccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhh
Q 010975          366 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE  443 (496)
Q Consensus       366 ~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le  443 (496)
                      .+|++++|  ||+..+.+++|+.++|.+|++.++.+.....+.++..+++.|+||+++||..++++|+..++++      
T Consensus       162 ~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adi~~l~~~A~~~a~~~------  235 (256)
T d1lv7a_         162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG------  235 (256)
T ss_dssp             TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred             cCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc------
Confidence            99999997  9999999999999999999999999988888889999999999999999999999998887753      


Q ss_pred             ccccCCCCCCCCCCCCCCchhHHHHhhcCC
Q 010975          444 GRQEVAPDDELPQIGPIRPEDVEIALKNTR  473 (496)
Q Consensus       444 ~~~~i~~~~~~~~~~~It~eDf~~Al~~~~  473 (496)
                      +            ...|+++||++|++++.
T Consensus       236 ~------------~~~i~~~d~~~Al~rv~  253 (256)
T d1lv7a_         236 N------------KRVVSMVEFEKAKDKIM  253 (256)
T ss_dssp             T------------CSSBCHHHHHHHHHHHT
T ss_pred             C------------CCccCHHHHHHHHHHHh
Confidence            1            12489999999998753

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.8e-41  Score=330.89  Aligned_cols=241  Identities=36%  Similarity=0.565  Sum_probs=208.9

Q ss_pred             CCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc
Q 010975          209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS  287 (496)
Q Consensus       209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~  287 (496)
                      +.|+++|+||+|++++|++|.+++.. +.+++.+... ...++++||+||||||||++|+++|++++.+++.++++++.+
T Consensus         2 ~~p~~~~~di~G~~~~k~~l~~~i~~-l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~   80 (247)
T d1ixza_           2 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE   80 (247)
T ss_dssp             CCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             CCCCCcHHHHccHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhh
Confidence            56899999999999999999997654 6677766654 677889999999999999999999999999999999999999


Q ss_pred             cccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc-chhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccc
Q 010975          288 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE  366 (496)
Q Consensus       288 ~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~  366 (496)
                      +|+|++++.++.+|+.|+.++|+||||||+|.+++++.... .......+++++|+..|+++... ..|+||+|||+|+.
T Consensus        81 ~~~g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~-~~vivi~tTn~~~~  159 (247)
T d1ixza_          81 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD-TAIVVMAATNRPDI  159 (247)
T ss_dssp             SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT-CCEEEEEEESCGGG
T ss_pred             ccccHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCC-CCEEEEEeCCCccc
Confidence            99999999999999999999999999999999998765432 23344567889999999987544 45889999999999


Q ss_pred             ccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhc
Q 010975          367 LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG  444 (496)
Q Consensus       367 Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~  444 (496)
                      +|++++|  ||+.+++|+.|+.++|.+|++.++.......+.+++.+++.|+||+++||..+|++|+..++++-      
T Consensus       160 ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~lv~~A~l~a~~~~------  233 (247)
T d1ixza_         160 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG------  233 (247)
T ss_dssp             SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT------
T ss_pred             cCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCccccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC------
Confidence            9999996  99999999999999999999999998888888899999999999999999999999988776531      


Q ss_pred             cccCCCCCCCCCCCCCCchhHHHHh
Q 010975          445 RQEVAPDDELPQIGPIRPEDVEIAL  469 (496)
Q Consensus       445 ~~~i~~~~~~~~~~~It~eDf~~Al  469 (496)
                                  ...|+++||++|+
T Consensus       234 ------------~~~i~~~d~~~A~  246 (247)
T d1ixza_         234 ------------RRKITMKDLEEAA  246 (247)
T ss_dssp             ------------CSSBCHHHHHHHT
T ss_pred             ------------CCCcCHHHHHHhh
Confidence                        1248999999996

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-41  Score=332.38  Aligned_cols=255  Identities=34%  Similarity=0.574  Sum_probs=220.8

Q ss_pred             CccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccC
Q 010975          213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRG  291 (496)
Q Consensus       213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G  291 (496)
                      ++|+||+|++++|++|++.+..++.+++.+... ..+++++|||||||||||++|+++|++++.+++.++++.+.+.+.|
T Consensus         1 ~~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g   80 (258)
T d1e32a2           1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG   80 (258)
T ss_dssp             CCGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTT
T ss_pred             CChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhcccccc
Confidence            469999999999999999999999999988875 7788999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHH
Q 010975          292 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAM  371 (496)
Q Consensus       292 ~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL  371 (496)
                      ..+..++.+|+.|+.++|+||||||+|.+++++....  ++..+.+...++..+++... ...|+||+|||+++.+|+++
T Consensus        81 ~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~--~~~~~~~~~~~~~~~~~~~~-~~~vlvi~tTn~~~~ld~al  157 (258)
T d1e32a2          81 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNSIDPAL  157 (258)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCC--CTTHHHHHHHHHHHHHTCCC-SSCEEEEEEESCGGGSCGGG
T ss_pred             cHHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCC--CchHHHHHHHhccccccccc-cCCccEEEeCCCccccchhh
Confidence            9999999999999999999999999999988765432  23345667777777776644 44588999999999999999


Q ss_pred             HH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCC
Q 010975          372 LR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA  449 (496)
Q Consensus       372 ~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~  449 (496)
                      +|  ||+++|++++|+.++|..|++.++++.....+.+++.+++.|+||+++||..+|++|+..+++|....++......
T Consensus       158 ~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adl~~lv~~A~~~a~~~~~~~~~~~~~~~  237 (258)
T d1e32a2         158 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI  237 (258)
T ss_dssp             TSTTSSCEEEECCCCCHHHHHHHHHHTTTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHCCCSSCC
T ss_pred             hhcccccceeECCCCCHHHHHHHhhhhccCcccccccchhhhhhcccCCCHHHHHHHHHHHHHHHHHhhccccchhhhhh
Confidence            98  9999999999999999999999999888778888999999999999999999999999999998766554332221


Q ss_pred             CCCCCCCCCCCCchhHHHHhhc
Q 010975          450 PDDELPQIGPIRPEDVEIALKN  471 (496)
Q Consensus       450 ~~~~~~~~~~It~eDf~~Al~~  471 (496)
                      .. ......+||++||+.||++
T Consensus       238 ~~-~~~~~~~it~~Df~~AL~~  258 (258)
T d1e32a2         238 DA-EVMNSLAVTMDDFRWALSQ  258 (258)
T ss_dssp             BH-HHHHHCCBCHHHHHHHHTC
T ss_pred             hh-hhhccCccCHHHHHHHhCc
Confidence            11 1122356999999999974

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.7e-39  Score=316.17  Aligned_cols=258  Identities=34%  Similarity=0.645  Sum_probs=203.0

Q ss_pred             CCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc
Q 010975          210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK  288 (496)
Q Consensus       210 ~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~  288 (496)
                      .|+++|+||+|++++|++|.+.+..++.+++.+... ..+++++||+||||||||++|+++|++++.+++.++++++.+.
T Consensus         1 ~p~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~   80 (265)
T d1r7ra3           1 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM   80 (265)
T ss_dssp             CCCCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTS
T ss_pred             CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhc
Confidence            478899999999999999999999998888877664 6778999999999999999999999999999999999999999


Q ss_pred             ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc-hhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccc
Q 010975          289 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL  367 (496)
Q Consensus       289 ~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~L  367 (496)
                      +.|..+..++.+|..|+.++|+||+|||+|.++..+..... .....+++++.++..++++.... +++||+|||.++.+
T Consensus        81 ~~~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~v~vi~ttn~~~~l  159 (265)
T d1r7ra3          81 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK-NVFIIGATNRPDII  159 (265)
T ss_dssp             CTTTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC-------CCEEEECCBSCTTT
T ss_pred             cccchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCC-CEEEEEeCCCchhC
Confidence            99999999999999999999999999999999887643322 23345667889999999876544 48899999999999


Q ss_pred             cHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcc
Q 010975          368 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR  445 (496)
Q Consensus       368 d~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~  445 (496)
                      |++++|  ||+.++.++.|+.++|.+||+.++++.....+.+++.+++.|+||+++||..+|++|...++++.....-..
T Consensus       160 d~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~l~~la~~t~g~s~~di~~lv~~A~~~A~~~~~~~~~~~  239 (265)
T d1r7ra3         160 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR  239 (265)
T ss_dssp             SCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC----CCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHC-------
T ss_pred             CHHHhCCCCccEEEEecchHHHHHHHHHHHHhccCCchhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999987  999999999999999999999999988877888999999999999999999999999999988754321111


Q ss_pred             ccCCCCCCCCCCCCCCchhHHHHhh
Q 010975          446 QEVAPDDELPQIGPIRPEDVEIALK  470 (496)
Q Consensus       446 ~~i~~~~~~~~~~~It~eDf~~Al~  470 (496)
                      ..  .....+...+++.+|+..+++
T Consensus       240 ~~--~~~~~~~~~~~~~~d~v~~i~  262 (265)
T d1r7ra3         240 ER--ERQTNPSAMEVEEDDPVPEIR  262 (265)
T ss_dssp             -------------------CHHHHH
T ss_pred             HH--HhccCccccccccccchHHHc
Confidence            11  111112233467777777665

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=99.89  E-value=2.4e-25  Score=222.65  Aligned_cols=161  Identities=16%  Similarity=0.142  Sum_probs=125.2

Q ss_pred             ccCccccccc-cCcccee-eeeCCCCChhHHHHHHHHhhhc--ceeeeeecccccccccCChHHHHHHHHHHhhhcCCcc
Q 010975          236 IKYPKYFTGL-LSPWKGI-LLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST  311 (496)
Q Consensus       236 ~~~~~~~~~~-~~~~~~v-LL~GPpGtGKT~LAralA~~l~--~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~I  311 (496)
                      ...|..+..+ ...++|+ ||+||||||||.+|+++|.+++  .+|+.++++++.++|+|+++++++.+|+.++.  |+|
T Consensus       108 ~~~~~~~~~~~~~~~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~--~~i  185 (321)
T d1w44a_         108 GCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ--HRV  185 (321)
T ss_dssp             SBCCEEEEETTEEEESEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH--CSE
T ss_pred             ccchHHHHHhhcccCCceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHHHhh--ccE
Confidence            3455555554 4555665 5589999999999999999986  67999999999999999999999999999985  789


Q ss_pred             eehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc---ccccHHHHH--HhhhhhcccCCCH
Q 010975          312 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP---WELDAAMLR--RLEKRILVPLPDT  386 (496)
Q Consensus       312 LfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p---~~Ld~aL~r--Rf~~~I~~~~P~~  386 (496)
                      |||||||.+.+.++.... .....+++++||..||++.... .|+||+|||+.   +.+++++.|  ||++.+.++.|+.
T Consensus       186 lf~DEid~~~~~r~~~~~-~~~~~r~v~~lL~e~dg~~~~~-~v~viaatN~~~~~~~i~~~~~r~~Rf~~~v~v~~pd~  263 (321)
T d1w44a_         186 IVIDSLKNVIGAAGGNTT-SGGISRGAFDLLSDIGAMAASR-GCVVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDV  263 (321)
T ss_dssp             EEEECCTTTC------------CCHHHHHHHHHHHHHHHHH-TCEEEEECCCCCCCHHHHHHHHHHHHHSCSEEEEECSS
T ss_pred             EEeehhhhhccccccCCC-CCcchhhhhhhhhhccccccCC-CeEEEEeCCCcccccchhhhhhccCcccceeecCCCCh
Confidence            999999999988765433 3445678899999999887554 48899999952   345666666  9999999999999


Q ss_pred             HHHHHHHHhhCCCC
Q 010975          387 EARRAMFESLLPSQ  400 (496)
Q Consensus       387 eeR~~Il~~~l~~~  400 (496)
                      ++|.+|++.+....
T Consensus       264 ~~r~~il~~~~~~~  277 (321)
T d1w44a_         264 DGEWQVLTRTGEGL  277 (321)
T ss_dssp             TTEEEEEEECBTTC
T ss_pred             HHHHHHHHHhccCc
Confidence            99998887776544

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.88  E-value=3.1e-24  Score=208.03  Aligned_cols=166  Identities=20%  Similarity=0.294  Sum_probs=124.4

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCCh-HHHHHHHHHHhhhcCCcceehhhHHHHHhhhc
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDAIISQRG  325 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~-e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~  325 (496)
                      .++++|||+||||||||++|+++|++++.+++.+++++....+.+.. .+.++.+|+.|+..+|+||||||||.+...+.
T Consensus        38 ~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g~~~~~~~~~i~~if~~A~~~~p~il~iDEid~l~~~~~  117 (246)
T d1d2na_          38 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVP  117 (246)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBT
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHhhcccccccccccccccccccccchhhhhhhhhhhhhhcccceeehhhhhhHhhhcc
Confidence            46689999999999999999999999999999999988766655544 46789999999999999999999999977644


Q ss_pred             CCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHH-HHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCC
Q 010975          326 EARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAA-MLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE  404 (496)
Q Consensus       326 ~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~a-L~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~  404 (496)
                      ..   ....+.+..+|+..+++......+|+||+|||+++.++++ +++||+..+++|.+  .+|.++++.+..... ..
T Consensus       118 ~~---~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~ld~~~~~~rF~~~i~~P~~--~~r~~il~~l~~~~~-~~  191 (246)
T d1d2na_         118 IG---PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNI--ATGEQLLEALELLGN-FK  191 (246)
T ss_dssp             TT---TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCE--EEHHHHHHHHHHHTC-SC
T ss_pred             cc---cchhHHHHHHHHHHhcCCCccccceeeeeccCChhhccchhhcCccceEEecCCc--hhHHHHHHHHHhccC-CC
Confidence            32   2233567788899999887778889999999999999875 66799988887444  344444443322111 12


Q ss_pred             CCCcceeeecccCC
Q 010975          405 SLPYDLLVERTEGY  418 (496)
Q Consensus       405 ~~~l~~la~~t~g~  418 (496)
                      ..+...+++.+.|.
T Consensus       192 ~~~~~~i~~~~~g~  205 (246)
T d1d2na_         192 DKERTTIAQQVKGK  205 (246)
T ss_dssp             HHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHcCCC
Confidence            22344455555553

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.87  E-value=4.9e-23  Score=205.86  Aligned_cols=180  Identities=22%  Similarity=0.297  Sum_probs=142.0

Q ss_pred             hhhcchHHHHHHhhhhcccccCccccccc--cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc--cccCC
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS--KWRGD  292 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~--~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~--~~~G~  292 (496)
                      .|+|++++|+.|.+.+..+.++..+....  ..+++++||+||||||||+||+++|+.++.+++.++++++..  .+.|.
T Consensus        15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~~~~~~~~   94 (309)
T d1ofha_          15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE   94 (309)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred             cccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccccchhcccccccccceeEeee
Confidence            48999999999998885554444333322  236689999999999999999999999999999999999974  47889


Q ss_pred             hHHHHHHHHHHhhhc-----CCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcccc-------CcEEEEEec
Q 010975          293 SEKLIKVLFELARHH-----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS-------DELVFVLAA  360 (496)
Q Consensus       293 ~e~~l~~lf~~a~~~-----~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~-------~~~viVIat  360 (496)
                      .+..++.+|..+...     +|+||||||||++++.+..... ......+++.||..+|+....       ..++++|++
T Consensus        95 ~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~~-~~~~~gv~~~LL~~~dg~~~~~~~~~i~~s~ilfi~~  173 (309)
T d1ofha_          95 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGA-DVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS  173 (309)
T ss_dssp             TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSS-HHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred             ccccccccchhhhcccccccCCceEEehhhhhhhhhccCccc-chhhhHHHHHhhHHhcCCEEecCCeEEEccceeEEec
Confidence            999999999988652     5799999999999876554332 222344677899999875321       123556665


Q ss_pred             ----cCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhC
Q 010975          361 ----TNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL  397 (496)
Q Consensus       361 ----Tn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l  397 (496)
                          ++.+..++++++.||+.++.++.|+.+++.+|+..+.
T Consensus       174 ga~~~~~~~~~~p~l~~R~~~~i~~~~~~~~~~~~Il~~~~  214 (309)
T d1ofha_         174 GAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPH  214 (309)
T ss_dssp             ECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSST
T ss_pred             cchhhcCcccchhhhhhhhheeeeccCCCHHHHHHHHHHHH
Confidence                5788899999999999999999999999999987653

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=1.5e-21  Score=186.30  Aligned_cols=189  Identities=18%  Similarity=0.209  Sum_probs=127.7

Q ss_pred             CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccccc
Q 010975          211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWR  290 (496)
Q Consensus       211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~  290 (496)
                      ++.+|+|++|++++++.|.+++.......       ....++|||||||||||++|+++|++++.+++.+++.....   
T Consensus         4 RP~~~~divGqe~~~~~l~~~i~~~~~~~-------~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~~~~~~---   73 (238)
T d1in4a2           4 RPKSLDEFIGQENVKKKLSLALEAAKMRG-------EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK---   73 (238)
T ss_dssp             SCSSGGGCCSCHHHHHHHHHHHHHHHHHT-------CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---
T ss_pred             CCCcHHHcCChHHHHHHHHHHHHHHHhcC-------CCCCeEEEECCCCCcHHHHHHHHHhccCCCcccccCccccc---
Confidence            35579999999999999999986543322       23468999999999999999999999999999988776642   


Q ss_pred             CChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc----CccccCcEEEEEeccCCccc
Q 010975          291 GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD----GLTQSDELVFVLAATNLPWE  366 (496)
Q Consensus       291 G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld----~~~~~~~~viVIatTn~p~~  366 (496)
                         ...+..++....  ..++++|||+|.+....++..........+ . .....+    .......++++|++||.+..
T Consensus        74 ---~~~~~~~~~~~~--~~~~~~ide~~~~~~~~~~~l~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~I~at~~~~~  146 (238)
T d1in4a2          74 ---QGDMAAILTSLE--RGDVLFIDEIHRLNKAVEELLYSAIEDFQI-D-IMIGKGPSAKSIRIDIQPFTLVGATTRSGL  146 (238)
T ss_dssp             ---HHHHHHHHHHCC--TTCEEEEETGGGCCHHHHHHHHHHHHTSCC-C-C---------------CCCEEEEEESCGGG
T ss_pred             ---HHHHHHHHHhhc--cCCchHHHHHHHhhhHHHhhcccceeeeee-e-eeecCcccccccccCCCCeEEEEecCCCcc
Confidence               234445554433  347999999998854322111100000000 0 000000    00112345778899999999


Q ss_pred             ccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCC-Ccceeeeccc
Q 010975          367 LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTE  416 (496)
Q Consensus       367 Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~-~l~~la~~t~  416 (496)
                      +++++++||...+.++.|+.+++..+++.++......... .++.+++.+.
T Consensus       147 ~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~s~  197 (238)
T d1in4a2         147 LSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSR  197 (238)
T ss_dssp             SCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTST
T ss_pred             ccccceeeeeEEEEecCCCHHHHHHHHHHhhhhccchhhHHHHHHHHHhCC
Confidence            9999999999989999999999999999888766554322 2444555444

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=3.6e-20  Score=176.90  Aligned_cols=188  Identities=19%  Similarity=0.174  Sum_probs=124.3

Q ss_pred             CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccccc
Q 010975          211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWR  290 (496)
Q Consensus       211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~  290 (496)
                      ++.+|+|++|++++++.|..++.......       .++.++||+||||||||++|+++|++++.++..++++....   
T Consensus         4 RP~~~ddivGq~~~~~~L~~~i~~~~~~~-------~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~~~---   73 (239)
T d1ixsb2           4 RPKTLDEYIGQERLKQKLRVYLEAAKARK-------EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK---   73 (239)
T ss_dssp             CCCSGGGSCSCHHHHHHHHHHHHHHTTSS-------SCCCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTCCS---
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHHHHhcC-------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCcccc---
Confidence            46689999999999999999986654322       23478999999999999999999999999999998876532   


Q ss_pred             CChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC-------ccccCcEEEEEeccCC
Q 010975          291 GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-------LTQSDELVFVLAATNL  363 (496)
Q Consensus       291 G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~-------~~~~~~~viVIatTn~  363 (496)
                         ............. ..+|++|||+|.+....++...     ..+.+.......+       ......+++++++|++
T Consensus        74 ---~~~~~~~~~~~~~-~~~i~~iDe~~~~~~~~~~~l~-----~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  144 (239)
T d1ixsb2          74 ---PGDLAAILANSLE-EGDILFIDEIHRLSRQAEEHLY-----PAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTR  144 (239)
T ss_dssp             ---HHHHHHHHHTTCC-TTCEEEEETGGGCCHHHHHHHH-----HHHHHSEEEEECSCTTCCCEEEEECCCCEEEEEESC
T ss_pred             ---chhhHHHHHhhcc-CCCeeeeecccccchhHHHhhh-----hhhhhhhhhhhhccchhhhhcccCCCCEEEEeeccC
Confidence               1222222222222 2369999999988544221111     0010100111100       0112334567778888


Q ss_pred             cccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCC-CcceeeecccC
Q 010975          364 PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG  417 (496)
Q Consensus       364 p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~-~l~~la~~t~g  417 (496)
                      +....++.++|+...+.+..|+.+++..+++..+.......+. .++.+++.+.|
T Consensus       145 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~g  199 (239)
T d1ixsb2         145 PGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG  199 (239)
T ss_dssp             CSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTTS
T ss_pred             cccccchhhcccceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcCC
Confidence            8777777788887889999999999999999887765544321 23445555554

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=7.3e-20  Score=173.23  Aligned_cols=216  Identities=18%  Similarity=0.167  Sum_probs=143.3

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc-----eeeee
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-----TFFNI  280 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~-----~~i~v  280 (496)
                      |.+++.+.+|+|++|++++++.|..++....            ..++||+||||+|||++|+++|++++.     .++..
T Consensus         4 w~ekyrP~~~~divg~~~~~~~L~~~i~~~~------------~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~   71 (227)
T d1sxjc2           4 WVEKYRPETLDEVYGQNEVITTVRKFVDEGK------------LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLEL   71 (227)
T ss_dssp             HHHHTCCSSGGGCCSCHHHHHHHHHHHHTTC------------CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEE
T ss_pred             hhhhhCCCCHHHccCcHHHHHHHHHHHHcCC------------CCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEe
Confidence            6778889999999999999999999885421            136999999999999999999998743     24555


Q ss_pred             ecccccccccCChHHHHHHHHH--HhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEE
Q 010975          281 SASSVVSKWRGDSEKLIKVLFE--LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL  358 (496)
Q Consensus       281 ~~s~l~~~~~G~~e~~l~~lf~--~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVI  358 (496)
                      +.++..+...  ..........  ........+++|||+|.+...             ....|+..++.   ....+.++
T Consensus        72 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~kiiiiDe~d~~~~~-------------~~~~Ll~~le~---~~~~~~~~  133 (227)
T d1sxjc2          72 NASDDRGIDV--VRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-------------AQNALRRVIER---YTKNTRFC  133 (227)
T ss_dssp             CTTSCCSHHH--HHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH-------------HHHHHHHHHHH---TTTTEEEE
T ss_pred             cccccCCeee--eecchhhccccccccCCCeEEEEEeccccchhh-------------HHHHHHHHhhh---cccceeec
Confidence            5554432111  0011111111  111123359999999987432             23446666653   23346677


Q ss_pred             eccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHH
Q 010975          359 AATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL  438 (496)
Q Consensus       359 atTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~  438 (496)
                      .+||.+..+.+++++|+.. +.|+.|+.++...++...+......              ++..++..+++. +.+.+|++
T Consensus       134 ~~~~~~~~i~~~i~sr~~~-i~~~~~~~~~i~~~l~~I~~~e~i~--------------i~~~~l~~i~~~-s~Gd~R~a  197 (227)
T d1sxjc2         134 VLANYAHKLTPALLSQCTR-FRFQPLPQEAIERRIANVLVHEKLK--------------LSPNAEKALIEL-SNGDMRRV  197 (227)
T ss_dssp             EEESCGGGSCHHHHTTSEE-EECCCCCHHHHHHHHHHHHHTTTCC--------------BCHHHHHHHHHH-HTTCHHHH
T ss_pred             cccCcHHHhHHHHHHHHhh-hcccccccccccccccccccccccc--------------CCHHHHHHHHHH-cCCcHHHH
Confidence            8899999999999999955 8999999999999999887665443              122233334333 34567777


Q ss_pred             HHHhhccccCCCCCCCCCCCCCCchhHHHHhh
Q 010975          439 MVLLEGRQEVAPDDELPQIGPIRPEDVEIALK  470 (496)
Q Consensus       439 ~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~  470 (496)
                      ++.++........   .....||.+++.+++.
T Consensus       198 in~Lq~~~~~~~~---~~~~~It~~~v~e~~g  226 (227)
T d1sxjc2         198 LNVLQSCKATLDN---PDEDEISDDVIYECCG  226 (227)
T ss_dssp             HHHTTTTTTTTCS---SSCCCBCHHHHHHHTT
T ss_pred             HHHHHHHHHhcCC---CCCCeeCHHHHHHHhC
Confidence            7777654322111   2234589999998874

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.76  E-value=1.9e-19  Score=170.88  Aligned_cols=168  Identities=21%  Similarity=0.194  Sum_probs=122.8

Q ss_pred             hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc-----ceee
Q 010975          204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFF  278 (496)
Q Consensus       204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~-----~~~i  278 (496)
                      +.|.+++.+.+|+|++|++++++.|..++...            ...++||+||||+|||++|+++|++++     ..++
T Consensus        12 ~~w~~ky~P~~~~diig~~~~~~~l~~~i~~~------------~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~   79 (231)
T d1iqpa2          12 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFL   79 (231)
T ss_dssp             SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEE
T ss_pred             chHHHHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEECCCCCcHHHHHHHHHHHHHhcccCCCee
Confidence            55788888999999999999999999988542            124799999999999999999999874     4678


Q ss_pred             eeecccccccccCChHHHHHHHHHH--hhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEE
Q 010975          279 NISASSVVSKWRGDSEKLIKVLFEL--ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF  356 (496)
Q Consensus       279 ~v~~s~l~~~~~G~~e~~l~~lf~~--a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi  356 (496)
                      ++++++..+...  ...........  .....+.|+++||+|.+...             ....|+..++   .....+.
T Consensus        80 e~n~s~~~~~~~--~~~~~~~~~~~~~~~~~~~~iilide~d~~~~~-------------~~~~ll~~l~---~~~~~~~  141 (231)
T d1iqpa2          80 ELNASDERGINV--IREKVKEFARTKPIGGASFKIIFLDEADALTQD-------------AQQALRRTME---MFSSNVR  141 (231)
T ss_dssp             EEETTCHHHHHT--THHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH-------------HHHHHHHHHH---HTTTTEE
T ss_pred             EEecCcccchhH--HHHHHHHHHhhhhccCCCceEEeehhhhhcchh-------------HHHHHhhhcc---cCCcceE
Confidence            888776543211  11111111111  12335679999999876433             1233455554   2233467


Q ss_pred             EEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975          357 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG  402 (496)
Q Consensus       357 VIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~  402 (496)
                      +|++||.+..+++++++|+.. +.++.|+.++...+++..+.....
T Consensus       142 ~i~~~n~~~~i~~~l~sR~~~-i~~~~~~~~~~~~~l~~~~~~e~i  186 (231)
T d1iqpa2         142 FILSCNYSSKIIEPIQSRCAI-FRFRPLRDEDIAKRLRYIAENEGL  186 (231)
T ss_dssp             EEEEESCGGGSCHHHHHTEEE-EECCCCCHHHHHHHHHHHHHTTTC
T ss_pred             EEeccCChhhchHhHhCcccc-ccccccchhhHHHHHHHHHHHhCC
Confidence            888999999999999999965 999999999999999998876554

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=2.6e-18  Score=164.64  Aligned_cols=208  Identities=21%  Similarity=0.239  Sum_probs=139.4

Q ss_pred             hhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce----------
Q 010975          207 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------  276 (496)
Q Consensus       207 ~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~----------  276 (496)
                      ..++.+.+|+|++|++++++.|..++...           ..++++||+||||+|||++|++++++++..          
T Consensus         3 ~~KyrP~~~~dlig~~~~~~~L~~~i~~~-----------~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~   71 (239)
T d1njfa_           3 ARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV   71 (239)
T ss_dssp             HHHTCCSSGGGSCSCHHHHHHHHHHHHTT-----------CCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSC
T ss_pred             hhhhCCCCHHHccChHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCcccc
Confidence            45678889999999999999999887542           134579999999999999999999988432          


Q ss_pred             --------------eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhh
Q 010975          277 --------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK  338 (496)
Q Consensus       277 --------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~  338 (496)
                                    ++.++.++.      .....++.+++.+..    ....|++|||+|.|..             ..+
T Consensus        72 ~~~~~~i~~~~~~~~~~~~~~~~------~~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~-------------~~q  132 (239)
T d1njfa_          72 CDNCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-------------HSF  132 (239)
T ss_dssp             SHHHHHHHHTCCTTEEEEETTCS------SSHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-------------HHH
T ss_pred             chHHHHHHcCCCCeEEEecchhc------CCHHHHHHHHHHHHhccccCCCEEEEEECcccCCH-------------HHH
Confidence                          233332211      112345666666542    2234999999998732             234


Q ss_pred             hhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCC
Q 010975          339 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGY  418 (496)
Q Consensus       339 ~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~  418 (496)
                      +.|+..|+.   ....+.+|++||+++.+.+++++||.. +.++.|+.++...++...+......              +
T Consensus       133 ~~Llk~lE~---~~~~~~~il~tn~~~~i~~~i~SRc~~-i~~~~~~~~~i~~~l~~i~~~e~~~--------------~  194 (239)
T d1njfa_         133 NALLKTLEE---PPEHVKFLLATTDPQKLPVTILSRCLQ-FHLKALDVEQIRHQLEHILNEEHIA--------------H  194 (239)
T ss_dssp             HHHHHHHHS---CCTTEEEEEEESCGGGSCHHHHTTSEE-EECCCCCHHHHHHHHHHHHHHHTCC--------------B
T ss_pred             HHHHHHHhc---CCCCeEEEEEcCCccccChhHhhhhcc-cccccCcHHHhhhHHHHHHhhhccC--------------C
Confidence            567787763   334466788889999999999999954 9999999999999888877544332              1


Q ss_pred             cCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhh
Q 010975          419 SGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK  470 (496)
Q Consensus       419 s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~  470 (496)
                      +...+..+++ .+.+.+|++++.++.....  .     ...|+.+|+.++|.
T Consensus       195 ~~~~l~~i~~-~s~Gd~R~ain~l~~~~~~--~-----~~~I~~~~v~~~lg  238 (239)
T d1njfa_         195 EPRALQLLAR-AAEGSLRDALSLTDQAIAS--G-----DGQVSTQAVSAMLG  238 (239)
T ss_dssp             CHHHHHHHHH-HTTTCHHHHHHHHHHHHHH--T-----TTSBCHHHHHHHHT
T ss_pred             CHHHHHHHHH-HcCCCHHHHHHHHHHHHHh--C-----CCCcCHHHHHHHhC
Confidence            1122233322 2335556655555432211  1     12389999988874

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=2e-18  Score=165.37  Aligned_cols=202  Identities=18%  Similarity=0.127  Sum_probs=125.4

Q ss_pred             hhhhCCCCCccchhhcchHHHHHHhhhhcccccCc-c----ccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYP-K----YFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~-~----~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      .|++++.+.+|+|++|+++++++|.+++....... .    .........+++||+||||||||++|+++|++++.+++.
T Consensus         3 lW~eky~P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~   82 (253)
T d1sxja2           3 LWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILE   82 (253)
T ss_dssp             CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             ccccCcCCCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhhhhc
Confidence            46778899999999999999999999885422111 0    011113344689999999999999999999999999999


Q ss_pred             eecccccccccCChHHHHHH--------------HHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhc
Q 010975          280 ISASSVVSKWRGDSEKLIKV--------------LFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM  345 (496)
Q Consensus       280 v~~s~l~~~~~G~~e~~l~~--------------lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~l  345 (496)
                      +++++..+.+...  ..+..              .........+.++++||+|.+....+          .....++...
T Consensus        83 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~~----------~~~~~~~~~~  150 (253)
T d1sxja2          83 QNASDVRSKTLLN--AGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR----------GGVGQLAQFC  150 (253)
T ss_dssp             ECTTSCCCHHHHH--HTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST----------THHHHHHHHH
T ss_pred             cccccchhhHHHH--HHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccchh----------hhhHHHhhhh
Confidence            9988765432100  00000              00011122346899999998753311          1112222222


Q ss_pred             cCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchh
Q 010975          346 DGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIR  424 (496)
Q Consensus       346 d~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~  424 (496)
                      .   .....++++++++....++ .+++|+ ..+.|+.|+.+++..+++.++...... .+..++.+++.+.    +|++
T Consensus       151 ~---~~~~~ii~i~~~~~~~~~~-~l~~~~-~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~~~l~~i~~~s~----GDiR  221 (253)
T d1sxja2         151 R---KTSTPLILICNERNLPKMR-PFDRVC-LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTR----GDIR  221 (253)
T ss_dssp             H---HCSSCEEEEESCTTSSTTG-GGTTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTT----TCHH
T ss_pred             c---ccccccccccccccccccc-ccccee-eeeeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhCC----CcHH
Confidence            1   2233466666665555555 455555 569999999999999999988654332 1222444444433    3554


Q ss_pred             hcc
Q 010975          425 LVS  427 (496)
Q Consensus       425 ~l~  427 (496)
                      .++
T Consensus       222 ~ai  224 (253)
T d1sxja2         222 QVI  224 (253)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=1.2e-18  Score=164.71  Aligned_cols=162  Identities=14%  Similarity=0.092  Sum_probs=118.3

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc-----eeeee
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-----TFFNI  280 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~-----~~i~v  280 (496)
                      |.+++.+.+++|++|++++++.|.+++....            ..++||+||||+|||++|+.+|++++.     .++.+
T Consensus         5 w~eKyrP~~~~d~ig~~~~~~~L~~~~~~~~------------~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~   72 (224)
T d1sxjb2           5 WVEKYRPQVLSDIVGNKETIDRLQQIAKDGN------------MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLEL   72 (224)
T ss_dssp             HHHHTCCSSGGGCCSCTHHHHHHHHHHHSCC------------CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEE
T ss_pred             hHhHhCCCCHHHhcCCHHHHHHHHHHHHcCC------------CCeEEEECCCCCCchhhHHHHHHHHhccccccccccc
Confidence            6778999999999999999999999885321            247999999999999999999999864     46777


Q ss_pred             ecccccccccCChHHHHHHHHHHhh-------hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCc
Q 010975          281 SASSVVSKWRGDSEKLIKVLFELAR-------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE  353 (496)
Q Consensus       281 ~~s~l~~~~~G~~e~~l~~lf~~a~-------~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~  353 (496)
                      ++++..+.      ..+...+....       .....+++|||+|.+...             ....|+..++   ....
T Consensus        73 n~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~~-------------~~~~ll~~~e---~~~~  130 (224)
T d1sxjb2          73 NASDDRGI------DVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-------------AQQALRRTME---LYSN  130 (224)
T ss_dssp             CTTSCCSH------HHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-------------HHHTTHHHHH---HTTT
T ss_pred             cccccCCc------eehhhHHHHHHHhhccCCCcceEEEEEecccccchh-------------HHHHHhhhcc---cccc
Confidence            77665432      22222221111       123459999999987433             2234555554   2333


Q ss_pred             EEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975          354 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG  402 (496)
Q Consensus       354 ~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~  402 (496)
                      ...++.+++....+.+++++||.. +.|+.|+.++...++...+.....
T Consensus       131 ~~~~i~~~~~~~~i~~~l~sr~~~-i~~~~~~~~~i~~~l~~i~~~e~~  178 (224)
T d1sxjb2         131 STRFAFACNQSNKIIEPLQSQCAI-LRYSKLSDEDVLKRLLQIIKLEDV  178 (224)
T ss_dssp             TEEEEEEESCGGGSCHHHHTTSEE-EECCCCCHHHHHHHHHHHHHHHTC
T ss_pred             ceeeeeccCchhhhhhHHHHHHHH-hhhcccchhhhHHHHHHHHHhccc
Confidence            456777888888999999999965 999999999999999988865443

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=5.8e-18  Score=160.33  Aligned_cols=166  Identities=17%  Similarity=0.193  Sum_probs=113.4

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh------cceeee
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------KTTFFN  279 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l------~~~~i~  279 (496)
                      |..++.+.+|+|++|++++++.|..++....            ..+++|+||||+|||++++++|+++      +...+.
T Consensus         2 w~~ky~P~~~~diig~~~~~~~l~~~i~~~~------------~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~   69 (237)
T d1sxjd2           2 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSAN------------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILE   69 (237)
T ss_dssp             HHHHTCCSSTTTCCSCCTTHHHHHHHTTCTT------------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred             cchhhCCCCHHHccCcHHHHHHHHHHHHcCC------------CCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhh
Confidence            5677899999999999999999998875321            2469999999999999999999987      345566


Q ss_pred             eecccccccccCChHHHHHHH------------HHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC
Q 010975          280 ISASSVVSKWRGDSEKLIKVL------------FELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG  347 (496)
Q Consensus       280 v~~s~l~~~~~G~~e~~l~~l------------f~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~  347 (496)
                      ++.+...+...  ....+...            ..........|++|||+|.+....             .+.++..++ 
T Consensus        70 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~~-------------~~~l~~~~~-  133 (237)
T d1sxjd2          70 LNASDERGISI--VREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADA-------------QSALRRTME-  133 (237)
T ss_dssp             ECSSSCCCHHH--HTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHH-------------HHHHHHHHH-
T ss_pred             eeccccccchH--HHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCHHH-------------HHHHhhccc-
Confidence            66554432110  01111111            111112233499999999874331             122333333 


Q ss_pred             ccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975          348 LTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG  402 (496)
Q Consensus       348 ~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~  402 (496)
                        .......+|.+++....+.+++++||. .+.|+.|+.++...+++..+.....
T Consensus       134 --~~~~~~~~i~~~~~~~~~~~~l~sr~~-~i~f~~~~~~~~~~~L~~i~~~e~i  185 (237)
T d1sxjd2         134 --TYSGVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENV  185 (237)
T ss_dssp             --HTTTTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred             --cccccccccccccccccccccccchhh-hhccccccccccchhhhhhhhhhcC
Confidence              122334566678888889999999995 4899999999999999998876554

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=3e-18  Score=158.92  Aligned_cols=171  Identities=23%  Similarity=0.388  Sum_probs=124.2

Q ss_pred             HHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-------
Q 010975          201 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------  273 (496)
Q Consensus       201 ~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-------  273 (496)
                      +...++.+.....+++.++|.++..+++.+.+....+            ++++|.||||+|||++++.+|+.+       
T Consensus         7 ~~~~dlt~~a~~g~ld~~igRd~Ei~~l~~iL~r~~k------------~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~   74 (195)
T d1jbka_           7 KYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTK------------NNPVLIGEPGVGKTAIVEGLAQRIINGEVPE   74 (195)
T ss_dssp             HHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSS------------CEEEEECCTTSCHHHHHHHHHHHHHHTCSCG
T ss_pred             HHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHhccCC------------CCeEEEecCCcccHHHHHHHHHHHHhCCCCH
Confidence            3444555555556789999999999999998865432            689999999999999999999866       


Q ss_pred             ---cceeeeeecccccc--cccCChHHHHHHHHHHhhhcC-CcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC
Q 010975          274 ---KTTFFNISASSVVS--KWRGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG  347 (496)
Q Consensus       274 ---~~~~i~v~~s~l~~--~~~G~~e~~l~~lf~~a~~~~-p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~  347 (496)
                         +.+++.++.+.+.+  +|.|+.+.++..+++.+.... ..||||||++.+.+..... +..+..+.+..    .+  
T Consensus        75 ~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~-g~~d~~~~Lkp----~L--  147 (195)
T d1jbka_          75 GLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-GAMDAGNMLKP----AL--  147 (195)
T ss_dssp             GGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------CCCCHHHHHH----HH--
T ss_pred             HHcCceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCC-CcccHHHHHHH----HH--
Confidence               67899999999875  578899999999998876543 5699999999997553221 11122222222    22  


Q ss_pred             ccccCcEEEEEeccCCc-----ccccHHHHHHhhhhhcccCCCHHHHHHHHH
Q 010975          348 LTQSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFE  394 (496)
Q Consensus       348 ~~~~~~~viVIatTn~p-----~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~  394 (496)
                        .++. +.+|++|...     -+-|++|.|||+. |.+..|+.++-..|++
T Consensus       148 --~rg~-l~~IgatT~eey~~~~e~d~aL~rrF~~-I~V~Ep~~e~t~~IL~  195 (195)
T d1jbka_         148 --ARGE-LHCVGATTLDEYRQYIEKDAALERRFQK-VFVAEPSVEDTIAILR  195 (195)
T ss_dssp             --HTTS-CCEEEEECHHHHHHHTTTCHHHHTTEEE-EECCCCCHHHHHTTCC
T ss_pred             --hCCC-ceEEecCCHHHHHHHHHcCHHHHhcCCE-eecCCCCHHHHHHHhC
Confidence              2344 4455555433     2468999999977 9999999999887763

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.2e-17  Score=162.80  Aligned_cols=169  Identities=26%  Similarity=0.377  Sum_probs=128.3

Q ss_pred             CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----------cceeeee
Q 010975          211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNI  280 (496)
Q Consensus       211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----------~~~~i~v  280 (496)
                      ...+++.++|.++..+++.+.+....            .+++||.||||+|||++++.+|+.+          +.+++.+
T Consensus        13 ~~~~ld~~igRd~Ei~~l~~iL~r~~------------k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l   80 (268)
T d1r6bx2          13 RVGGIDPLIGREKELERAIQVLCRRR------------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL   80 (268)
T ss_dssp             HTTCSCCCCSCHHHHHHHHHHHTSSS------------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred             HcCCCCcccChHHHHHHHHHHHhcCc------------cCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEe
Confidence            34558899999999999999886533            2689999999999999999999875          6789999


Q ss_pred             ecccccc--cccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEE
Q 010975          281 SASSVVS--KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL  358 (496)
Q Consensus       281 ~~s~l~~--~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVI  358 (496)
                      +.+.+.+  +|.|+.+.+++.+++.+......||||||++.+.+..+..++..+..+.+...        -.++. +.+|
T Consensus        81 ~~~~liag~~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~--------L~rg~-i~vI  151 (268)
T d1r6bx2          81 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPL--------LSSGK-IRVI  151 (268)
T ss_dssp             CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSC--------SSSCC-CEEE
T ss_pred             eechHhccCccchhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHH--------HhCCC-CeEE
Confidence            9999886  78999999999999999888878999999999987644333322322222222        23444 4566


Q ss_pred             eccCCc-----ccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975          359 AATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT  401 (496)
Q Consensus       359 atTn~p-----~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~  401 (496)
                      ++|...     ..-|++|.|||+. |.+..|+.++-.+|++.....+.
T Consensus       152 gatT~eey~~~~e~d~al~rrF~~-I~V~Eps~e~t~~IL~~~~~~~e  198 (268)
T d1r6bx2         152 GSTTYQEFSNIFEKDRALARRFQK-IDITEPSIEETVQIINGLKPKYE  198 (268)
T ss_dssp             EEECHHHHHCCCCCTTSSGGGEEE-EECCCCCHHHHHHHHHHHHHHHH
T ss_pred             EeCCHHHHHHHHhhcHHHHhhhcc-cccCCCCHHHHHHHHHHhhHHHh
Confidence            665543     2468999999977 99999999999999987664443

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=2.6e-17  Score=157.18  Aligned_cols=167  Identities=15%  Similarity=0.215  Sum_probs=107.9

Q ss_pred             hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---eeeeec
Q 010975          206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISA  282 (496)
Q Consensus       206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~---~i~v~~  282 (496)
                      |++++.+.+|+|++|.+++++.|..++.....           ..++||+||||||||++|+++|+++..+   ...++.
T Consensus         1 W~eky~P~~~~diig~~~~~~~L~~~~~~~~~-----------~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~   69 (252)
T d1sxje2           1 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRD-----------LPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDV   69 (252)
T ss_dssp             CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTC-----------CCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC-----
T ss_pred             CCcccCCCCHHHccCcHHHHHHHHHHHHcCCC-----------CCeEEEECCCCCCHHHHHHHHHHhhcCcccccccccc
Confidence            56788899999999999999999987754321           2479999999999999999999986211   111110


Q ss_pred             ccc---------------------cccccCC-hHHHHHHHHHHhh--------------hcCCcceehhhHHHHHhhhcC
Q 010975          283 SSV---------------------VSKWRGD-SEKLIKVLFELAR--------------HHAPSTIFLDEIDAIISQRGE  326 (496)
Q Consensus       283 s~l---------------------~~~~~G~-~e~~l~~lf~~a~--------------~~~p~ILfIDEID~L~~~r~~  326 (496)
                      ...                     .....+. .............              .....+++|||+|.+...   
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~~---  146 (252)
T d1sxje2          70 RQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKD---  146 (252)
T ss_dssp             -------------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHH---
T ss_pred             ccccccccchhhhhhccCCccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEeccccccccc---
Confidence            000                     0000010 1111111111111              112348999999887322   


Q ss_pred             CcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCC
Q 010975          327 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ  400 (496)
Q Consensus       327 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~  400 (496)
                                ....++..++   .....+.+|++||.++.+++++++||. .+.|+.|+.++..++++..+...
T Consensus       147 ----------~~~~l~~~~e---~~~~~~~~Il~tn~~~~i~~~l~sR~~-~i~~~~~~~~~~~~~l~~i~~~e  206 (252)
T d1sxje2         147 ----------AQAALRRTME---KYSKNIRLIMVCDSMSPIIAPIKSQCL-LIRCPAPSDSEISTILSDVVTNE  206 (252)
T ss_dssp             ----------HHHHHHHHHH---HSTTTEEEEEEESCSCSSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHH
T ss_pred             ----------cchhhhcccc---cccccccceeeeccccchhhhhhcchh-eeeecccchhhHHHHHHHHHHHc
Confidence                      1233445554   223446678899999999999999995 59999999999999998877543

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.58  E-value=5.7e-17  Score=165.88  Aligned_cols=184  Identities=21%  Similarity=0.351  Sum_probs=121.5

Q ss_pred             HHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-------
Q 010975          201 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------  273 (496)
Q Consensus       201 ~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-------  273 (496)
                      +..+++.......+++.++|.++..+++.+++....            .++++|.||||+|||++++.+|..+       
T Consensus         7 ~~~~~l~~~a~~g~ld~~~gr~~ei~~~~~~L~r~~------------k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~   74 (387)
T d1qvra2           7 QYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRT------------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPE   74 (387)
T ss_dssp             HHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSS------------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCT
T ss_pred             HHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHhcCC------------CCCCeEECCCCCCHHHHHHHHHHHHHhCCCCH
Confidence            444555555566779999999999999999886543            2679999999999999999999866       


Q ss_pred             ---cceeeeeecccccc--cccCChHHHHHHHHHHhhhcC-CcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC
Q 010975          274 ---KTTFFNISASSVVS--KWRGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG  347 (496)
Q Consensus       274 ---~~~~i~v~~s~l~~--~~~G~~e~~l~~lf~~a~~~~-p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~  347 (496)
                         +.+++.++.+.+.+  .|.|+++.++..++..+.... +.||||||++.+.+..+. .+..+..+-+...|      
T Consensus        75 ~l~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~-~g~~d~a~~Lkp~L------  147 (387)
T d1qvra2          75 GLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA-EGAVDAGNMLKPAL------  147 (387)
T ss_dssp             TSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------HHHH------
T ss_pred             HHcCceEEEeeHhhhhcccCcchhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCC-CCcccHHHHHHHHH------
Confidence               57899999999986  688999999999999887764 568999999999865332 22223333333333      


Q ss_pred             ccccCcEEEEEeccCCc----ccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCC
Q 010975          348 LTQSDELVFVLAATNLP----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP  407 (496)
Q Consensus       348 ~~~~~~~viVIatTn~p----~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~  407 (496)
                        .++. +.+|++|...    -.-|++|.|||+. |.+..|+.++-..|++.....+...+.+.
T Consensus       148 --~rg~-~~~I~~tT~~ey~~~e~d~al~rrF~~-v~v~ep~~~~~~~il~~~~~~~e~~h~v~  207 (387)
T d1qvra2         148 --ARGE-LRLIGATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKYEVHHGVR  207 (387)
T ss_dssp             --HTTC-CCEEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             --hCCC-cceeeecCHHHHHHhcccHHHHHhccc-ccCCCCcHHHHHHHHHHHHHHHHhccCCc
Confidence              2344 4455555433    1357899999977 99999999999999998876665554444

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=99.58  E-value=2.8e-17  Score=166.95  Aligned_cols=202  Identities=17%  Similarity=0.056  Sum_probs=129.4

Q ss_pred             hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccc-cCChHH
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW-RGDSEK  295 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~-~G~~e~  295 (496)
                      +..|++.++..+.+++...+       .+.+..+++||+||||||||++|+++|+.++.+++.+++++..+.+ .+....
T Consensus       129 l~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs~~~l~~~~~  201 (362)
T d1svma_         129 LHCLLPKMDSVVYDFLKCMV-------YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAID  201 (362)
T ss_dssp             HTTTSTTHHHHHHHHHHHHH-------HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTT
T ss_pred             HHhcccchHHHHHHHHHHHH-------hCCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEECcchhhHHHHHhHHH
Confidence            34556666776666654322       2234557999999999999999999999999999999998876653 333333


Q ss_pred             HHHHHHHHhh------hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccH
Q 010975          296 LIKVLFELAR------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA  369 (496)
Q Consensus       296 ~l~~lf~~a~------~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~  369 (496)
                      ....+|+.+.      ...|+++++||+|.|...+++..... ....- ....      ....  ..+|+|||..+  .+
T Consensus       202 ~~~~l~d~~~~~~~~~~~~~~~~~~DeiD~l~~~~dg~~~~~-~~~~~-~~~~------~~~~--~p~i~ttN~~~--~~  269 (362)
T d1svma_         202 QFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVN-LEKKH-LNKR------TQIF--PPGIVTMNEYS--VP  269 (362)
T ss_dssp             CSCEEETTCCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEE-ECCSS-SCCE------EECC--CCEEEEECSCC--CC
T ss_pred             HHHHHHHHHHHhhhhccCCCCeEEEehHhhcccccCCcchhh-hhhhh-hchh------hhcc--CCceeeccccc--cc
Confidence            3333444442      34578999999999876543321100 00000 0000      0001  12677899653  22


Q ss_pred             HHHH-HhhhhhcccCCCHHHHH-HHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHH
Q 010975          370 AMLR-RLEKRILVPLPDTEARR-AMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM  439 (496)
Q Consensus       370 aL~r-Rf~~~I~~~~P~~eeR~-~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~  439 (496)
                      .++. ||+..+.+..|+...+. .++..++.+....  .+.+.++..+.+++++|++..+++++....++..
T Consensus       270 ~~r~~Rf~~~i~~~~~~~~~~~~~~l~~i~~~~~l~--~~~~~L~~li~~~s~~D~~~~i~~~~~~~~~~l~  339 (362)
T d1svma_         270 KTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQ--SGIALLLMLIWYRPVAEFAQSIQSRIVEWKERLD  339 (362)
T ss_dssp             HHHHTTEEEEEECCCCHHHHHHHHTCTHHHHTTCTT--CHHHHHHHHHHHSCGGGSCGGGHHHHHHHHHHHH
T ss_pred             ccccccCceEEeecCCCcHHHHHHHHHHHhcccCCC--CCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHh
Confidence            2333 99999999888776664 4445555444332  3455677888899999999999998877666543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.54  E-value=1e-14  Score=139.04  Aligned_cols=171  Identities=16%  Similarity=0.107  Sum_probs=106.7

Q ss_pred             CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeeccccc
Q 010975          211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVV  286 (496)
Q Consensus       211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~s~l~  286 (496)
                      |....+.++|.+..++.|.+++...+..+.      ..++++||+||||||||++++++++.+    +..++.+++....
T Consensus        11 ~~y~p~~l~~Re~ei~~l~~~l~~~l~~~~------~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~   84 (276)
T d1fnna2          11 PSYVPKRLPHREQQLQQLDILLGNWLRNPG------HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR   84 (276)
T ss_dssp             TTCCCSCCTTCHHHHHHHHHHHHHHHHSTT------SSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHhCCC------CCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhhh
Confidence            444556799999999999998865443332      345789999999999999999999987    4556666654322


Q ss_pred             c----------------cccCCh-HHHHHHHHHHhhh-cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc
Q 010975          287 S----------------KWRGDS-EKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL  348 (496)
Q Consensus       287 ~----------------~~~G~~-e~~l~~lf~~a~~-~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~  348 (496)
                      .                ...+.. ......+.+.... ..+.++++|++|.+....          ......++..+.. 
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----------~~~~~~~~~~~~~-  153 (276)
T d1fnna2          85 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDI----------LSTFIRLGQEADK-  153 (276)
T ss_dssp             SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHH----------HHHHHHHTTCHHH-
T ss_pred             hhhhhhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhhhhh----------hhhHHHHHhcccc-
Confidence            1                111222 2223333333332 234577788887653221          1111122222211 


Q ss_pred             cccCcEEEEEeccCCc---ccccHHHHHHhh-hhhcccCCCHHHHHHHHHhhCCC
Q 010975          349 TQSDELVFVLAATNLP---WELDAAMLRRLE-KRILVPLPDTEARRAMFESLLPS  399 (496)
Q Consensus       349 ~~~~~~viVIatTn~p---~~Ld~aL~rRf~-~~I~~~~P~~eeR~~Il~~~l~~  399 (496)
                       .....+.+|++++..   +.+++++.+|+. ..+.+++|+.+++.+|++..+..
T Consensus       154 -~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~~~  207 (276)
T d1fnna2         154 -LGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKA  207 (276)
T ss_dssp             -HSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHH
T ss_pred             -ccccceEEeecCCchhhhhhcchhhhhhhcchhccccchhHHHHHHHHHHHHHH
Confidence             122335566677664   458889988874 44889999999999999887643

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.51  E-value=5.6e-15  Score=141.72  Aligned_cols=233  Identities=13%  Similarity=0.027  Sum_probs=129.3

Q ss_pred             CccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc---------ceeeeeecc
Q 010975          213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---------TTFFNISAS  283 (496)
Q Consensus       213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~---------~~~i~v~~s  283 (496)
                      ...+.+.|.+..++.|.+.+..+..+....   ......++|+||||||||++++++++++.         ..+..+++.
T Consensus        13 ~~P~~~~~Re~e~~~l~~~l~~~~~~~~~~---~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~   89 (287)
T d1w5sa2          13 YIPPELRVRRGEAEALARIYLNRLLSGAGL---SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAF   89 (287)
T ss_dssp             CCCSSCSSSCHHHHHHHHHHHHHHHTSSCB---CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHcCCCC---CCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeeccc
Confidence            345678999999999888775544322110   11123477899999999999999999873         344455543


Q ss_pred             ccccc----------------ccCChHHHHHH-HHHHhh-hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhc
Q 010975          284 SVVSK----------------WRGDSEKLIKV-LFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM  345 (496)
Q Consensus       284 ~l~~~----------------~~G~~e~~l~~-lf~~a~-~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~l  345 (496)
                      .....                ..+.....+.. +..... ...+.++++||+|.+....+....    .......+.+.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~~~----~~~~l~~l~~~l  165 (287)
T d1w5sa2          90 NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAE----DLYTLLRVHEEI  165 (287)
T ss_dssp             GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHH----HHHHHHTHHHHS
T ss_pred             cccchhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccchh----HHHHHHHHHHhc
Confidence            32211                22333333333 333222 234468889999999765332211    111112222323


Q ss_pred             cCccccCcEEEEEeccCCcc------cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCC---CCCcceeeeccc
Q 010975          346 DGLTQSDELVFVLAATNLPW------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE---SLPYDLLVERTE  416 (496)
Q Consensus       346 d~~~~~~~~viVIatTn~p~------~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~---~~~l~~la~~t~  416 (496)
                      ........ +.+|+.++.++      ...+++.+|+...+.++.|+.++..+|++..++......   +..++.+++.+.
T Consensus       166 ~~~~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~~~~~~~~~~~~~al~~ia~~~~  244 (287)
T d1w5sa2         166 PSRDGVNR-IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYG  244 (287)
T ss_dssp             CCTTSCCB-EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHC
T ss_pred             chhhcccc-eeEEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhHHHhhccCCCCHHHHHHHHHHHh
Confidence            22222222 33444444443      234677778888899999999999999998764322221   122444555554


Q ss_pred             CCc--CCchhh---cchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhc
Q 010975          417 GYS--GSDIRL---VSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKN  471 (496)
Q Consensus       417 g~s--~~dI~~---l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~  471 (496)
                      ++.  .+|++.   ++++|+..+..      ++            ...||.+|+++|+++
T Consensus       245 ~~~~~~gd~R~ai~~l~~a~~~A~~------~~------------~~~It~~~V~~A~~e  286 (287)
T d1w5sa2         245 EDKGGDGSARRAIVALKMACEMAEA------MG------------RDSLSEDLVRKAVSE  286 (287)
T ss_dssp             GGGTSCCCHHHHHHHHHHHHHHHHH------TT------------CSSCCHHHHHHHHHH
T ss_pred             ccccCCCCHHHHHHHHHHHHHHHHH------cC------------CCCCCHHHHHHHHhc
Confidence            332  234443   33333322211      11            124999999999874

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=3e-14  Score=141.85  Aligned_cols=167  Identities=20%  Similarity=0.236  Sum_probs=115.6

Q ss_pred             chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc-----cc
Q 010975          216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-----WR  290 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~-----~~  290 (496)
                      +.|+|++++++.+.+.+......  + .....|...+||+||||||||.||+++|+.++.+++.++++++...     ..
T Consensus        22 ~~viGQ~~a~~~v~~~v~~~~~~--l-~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~~~~~~~~~l~   98 (315)
T d1r6bx3          22 MLVFGQDKAIEALTEAIKMARAG--L-GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI   98 (315)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTT--C-SCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSC
T ss_pred             CeecChHHHHHHHHHHHHHHHcc--C-CCCCCCceEEEEECCCcchhHHHHHHHHhhccCCeeEeccccccchhhhhhhc
Confidence            46999999999999987533211  0 1112233469999999999999999999999999999999887542     22


Q ss_pred             CChHHHH-----HHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------cccCcEEEE
Q 010975          291 GDSEKLI-----KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSDELVFV  357 (496)
Q Consensus       291 G~~e~~l-----~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~~~~viV  357 (496)
                      |...+.+     ..+.........+|+++||+|+..+             .+.+.|++.+++-        .....+.++
T Consensus        99 g~~~gy~g~~~~~~l~~~~~~~~~~vvl~DeieKa~~-------------~V~~~lLqild~G~ltd~~Gr~vdf~n~ii  165 (315)
T d1r6bx3          99 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-------------DVFNILLQVMDNGTLTDNNGRKADFRNVVL  165 (315)
T ss_dssp             CCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEEETTTEEEECTTEEE
T ss_pred             ccCCCccccccCChhhHHHHhCccchhhhcccccccc-------------hHhhhhHHhhccceecCCCCCccCccceEE
Confidence            3221111     1133334455568999999998643             2445566666421        122345778


Q ss_pred             EeccCCcc-------------------------cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCC
Q 010975          358 LAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLP  398 (496)
Q Consensus       358 IatTn~p~-------------------------~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~  398 (496)
                      |+|+|--.                         .+.|.++.|++.++.+.+.+.++...|+...+.
T Consensus       166 I~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~~~~I~~~~l~  231 (315)
T d1r6bx3         166 VMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIV  231 (315)
T ss_dssp             EEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred             EeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccchhhhHHHHHHHHHHH
Confidence            88988421                         267788889999999999999999988877664

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.43  E-value=1.6e-14  Score=136.04  Aligned_cols=168  Identities=21%  Similarity=0.285  Sum_probs=107.0

Q ss_pred             CCCccchh-hc--chHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccc
Q 010975          211 PDVKWESI-KG--LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS  284 (496)
Q Consensus       211 ~~~~l~dl-iG--~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~  284 (496)
                      |+.+|++. +|  .+.+.+.+.+++..+.          ...+.++||||||||||+|++++++++   +..+++++..+
T Consensus         5 ~~~tFdnF~vg~~N~~a~~~~~~~~~~~~----------~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~   74 (213)
T d1l8qa2           5 PKYTLENFIVGEGNRLAYEVVKEALENLG----------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD   74 (213)
T ss_dssp             TTCCSSSCCCCTTTHHHHHHHHHHHHTTT----------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             CCCChhhccCCCcHHHHHHHHHHHHhCcC----------CCCCcEEEECCCCCcHHHHHHHHHHHhccCccceEEechHH
Confidence            66788884 46  3444555555554331          112459999999999999999999988   55677777776


Q ss_pred             ccccccCChH-HHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCC
Q 010975          285 VVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL  363 (496)
Q Consensus       285 l~~~~~G~~e-~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~  363 (496)
                      +...+..... +....+.+...  ...+|+|||+|.+.++           ......|...++.....+. .+|+++...
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~--~~dll~iDDi~~i~~~-----------~~~~~~lf~lin~~~~~~~-~iiits~~~  140 (213)
T d1l8qa2          75 FAQAMVEHLKKGTINEFRNMYK--SVDLLLLDDVQFLSGK-----------ERTQIEFFHIFNTLYLLEK-QIILASDRH  140 (213)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHH--TCSEEEEECGGGGTTC-----------HHHHHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             HHHHHHHHHHccchhhHHHHHh--hccchhhhhhhhhcCc-----------hHHHHHHHHHHHHHhhccc-eEEEecCCc
Confidence            6543322111 11122222222  2369999999988644           2233445555554444444 446666667


Q ss_pred             ccc---ccHHHHHHhhhh--hcccCCCHHHHHHHHHhhCCCCCCC
Q 010975          364 PWE---LDAAMLRRLEKR--ILVPLPDTEARRAMFESLLPSQTGE  403 (496)
Q Consensus       364 p~~---Ld~aL~rRf~~~--I~~~~P~~eeR~~Il~~~l~~~~~~  403 (496)
                      |..   +.+.|.+|+...  +.++ |+.++|.++++.++..++..
T Consensus       141 p~~l~~~~~dL~SRL~~g~~~~i~-p~d~~~~~iL~~~a~~rgl~  184 (213)
T d1l8qa2         141 PQKLDGVSDRLVSRFEGGILVEIE-LDNKTRFKIIKEKLKEFNLE  184 (213)
T ss_dssp             GGGCTTSCHHHHHHHHTSEEEECC-CCHHHHHHHHHHHHHHTTCC
T ss_pred             chhccccchHHHHHhhCceEEEEC-CCcHHHHHHHHHHHHHcCCC
Confidence            754   458899998643  4455 67789999999998776654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.39  E-value=2.2e-13  Score=135.43  Aligned_cols=166  Identities=24%  Similarity=0.305  Sum_probs=112.3

Q ss_pred             chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc----
Q 010975          216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----  288 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~----  288 (496)
                      +.|+|++++++.+.+.+......-   .....|...+||+||+|+|||.+|+.+|+.+   +.+++.++++++...    
T Consensus        23 ~~v~GQ~~ai~~v~~~i~~~~~~l---~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~~~~~~   99 (315)
T d1qvra3          23 KRVVGQDEAIRAVADAIRRARAGL---KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS   99 (315)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHGGGC---SCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGG
T ss_pred             CeEeCHHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccccchhhh
Confidence            458999999999988775432110   0111233468899999999999999999998   788999998876542    


Q ss_pred             -ccCChHHHH-----HHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------cccCcE
Q 010975          289 -WRGDSEKLI-----KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSDEL  354 (496)
Q Consensus       289 -~~G~~e~~l-----~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~~~~  354 (496)
                       ..|...+.+     ..+.+..+.+..+|+++||||++.++             +.+.|+..++.-        .....+
T Consensus       100 ~L~g~~~gyvG~~~~~~l~~~~~~~p~~Vvl~DEieK~~~~-------------v~~~ll~~l~~g~~~~~~gr~v~~~~  166 (315)
T d1qvra3         100 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPD-------------VFNILLQILDDGRLTDSHGRTVDFRN  166 (315)
T ss_dssp             GC--------------CHHHHHHHCSSEEEEESSGGGSCHH-------------HHHHHHHHHTTTEECCSSSCCEECTT
T ss_pred             hhcCCCCCCcCcccCChHHHHHHhCCCcEEEEehHhhcCHH-------------HHHHHHHHhccCceeCCCCcEecCcc
Confidence             222221111     12344455555689999999986432             344455555432        122345


Q ss_pred             EEEEeccCCc--------------------------ccccHHHHHHhhhhhcccCCCHHHHHHHHHhhC
Q 010975          355 VFVLAATNLP--------------------------WELDAAMLRRLEKRILVPLPDTEARRAMFESLL  397 (496)
Q Consensus       355 viVIatTn~p--------------------------~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l  397 (496)
                      .++|+|||--                          ..+.|.++.||+.++.|.+.+.++..+|+...+
T Consensus       167 ~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L~~~~~~~I~~~~l  235 (315)
T d1qvra3         167 TVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQL  235 (315)
T ss_dssp             EEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHH
T ss_pred             eEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHhcCCeeeeccchhhhhhHHHHHHHH
Confidence            7889999952                          237789999999999999999999999877554

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.35  E-value=1.7e-13  Score=136.70  Aligned_cols=156  Identities=23%  Similarity=0.309  Sum_probs=95.3

Q ss_pred             CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc---------------
Q 010975          211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------------  275 (496)
Q Consensus       211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~---------------  275 (496)
                      |...|.+|+|++.+|+.|.-.+..+            ...|+||.||||||||++||+++..+..               
T Consensus         2 ~~~~f~~I~Gq~~~kral~laa~~~------------~~h~vLl~G~pG~GKT~lar~~~~iLp~~~~~~~~~~~~~~~~   69 (333)
T d1g8pa_           2 PVFPFSAIVGQEDMKLALLLTAVDP------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVE   69 (333)
T ss_dssp             CCCCGGGSCSCHHHHHHHHHHHHCG------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGG
T ss_pred             CCCChhhccCcHHHHHHHHHHHhcc------------CCCeEEEECCCCccHHHHHHHHHHhCCCchhhccCccccCccc
Confidence            4556999999999999877554322            1257999999999999999999986510               


Q ss_pred             ------------------eeeeeecccccccccCCh--HHHHH--------HHHHHhhhcCCcceehhhHHHHHhhhcCC
Q 010975          276 ------------------TFFNISASSVVSKWRGDS--EKLIK--------VLFELARHHAPSTIFLDEIDAIISQRGEA  327 (496)
Q Consensus       276 ------------------~~i~v~~s~l~~~~~G~~--e~~l~--------~lf~~a~~~~p~ILfIDEID~L~~~r~~~  327 (496)
                                        +++....+...+...|..  .....        ..+..|.   .+|+||||++.+.      
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~---~gvl~iDEi~~~~------  140 (333)
T d1g8pa_          70 MIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARAN---RGYLYIDECNLLE------  140 (333)
T ss_dssp             GSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHT---TEEEEETTGGGSC------
T ss_pred             cccchhhccccCcccccCceeeccCCCCcccccCcchhhhccccCcceeecccccccc---ccEeecccHHHHH------
Confidence                              111111100000011100  00000        0122222   2799999998763      


Q ss_pred             cchhHHhhhhhhhhhhhccCcc----------ccCcEEEEEeccCCc-ccccHHHHHHhhhhhcccCC-CHHHHHHHHH
Q 010975          328 RSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLP-WELDAAMLRRLEKRILVPLP-DTEARRAMFE  394 (496)
Q Consensus       328 ~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~viVIatTn~p-~~Ld~aL~rRf~~~I~~~~P-~~eeR~~Il~  394 (496)
                             ..+++.|++.|+.-.          ..+..+++++|+|.. ..+++++++||+..+.++.| +.+++.++..
T Consensus       141 -------~~~~~aLl~~me~~~v~i~r~g~~~~~p~~f~liaa~Np~~~~l~~~llDRf~~~i~v~~~~~~~~~~~~~~  212 (333)
T d1g8pa_         141 -------DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIR  212 (333)
T ss_dssp             -------HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHH
T ss_pred             -------HHHHHHHhhhhcCCeEEecccCceecCCCCEEEEEecCccccccccchhhhhcceeeccCcchhhHHHHHHH
Confidence                   345566777665211          112346788888876 45999999999988888876 5555555443

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=99.35  E-value=2.2e-13  Score=138.09  Aligned_cols=180  Identities=21%  Similarity=0.316  Sum_probs=113.2

Q ss_pred             hhhcchHHHHHHhhhhcccccCccc------------------cccccCccceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKY------------------FTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF  278 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~------------------~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i  278 (496)
                      -|+|++++|+.+...+....++-..                  ......++.++||.||+|||||.+||++|+.++.+++
T Consensus        18 ~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~~~~~~~i   97 (364)
T d1um8a_          18 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA   97 (364)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             eecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHhhccccee
Confidence            5999999999998776322111000                  0011246678999999999999999999999999999


Q ss_pred             eeecccccc-cccCC-hHHHHHHHHHHh----hhcCCcceehhhHHHHHhhhcCCcchhH-HhhhhhhhhhhhccCccc-
Q 010975          279 NISASSVVS-KWRGD-SEKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHE-ASRRLKTELLIQMDGLTQ-  350 (496)
Q Consensus       279 ~v~~s~l~~-~~~G~-~e~~l~~lf~~a----~~~~p~ILfIDEID~L~~~r~~~~~~~~-~~~~i~~~Ll~~ld~~~~-  350 (496)
                      .++++.+.. .|+|. ....++.++..+    +..+.+|+++||+|+..+.........+ ....+++.||+.+++-.. 
T Consensus        98 r~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~~~~d~a~~~V~~~lLqild~~~~~  177 (364)
T d1um8a_          98 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN  177 (364)
T ss_dssp             EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred             ehhhhhcccchhhHhhhccchhhhhhhchhHHHHhhcccchhhhhhhhccccccccccccccchHHHHhhhhhhcCceec
Confidence            999998876 45554 234455555443    3345689999999997654322111111 224467778888874211 


Q ss_pred             ---------cCcEEEEEeccCCc-------------------------------------------------ccccHHHH
Q 010975          351 ---------SDELVFVLAATNLP-------------------------------------------------WELDAAML  372 (496)
Q Consensus       351 ---------~~~~viVIatTn~p-------------------------------------------------~~Ld~aL~  372 (496)
                               ...+.+++.|+|-.                                                 ..+.|.+.
T Consensus       178 ~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEf~  257 (364)
T d1um8a_         178 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI  257 (364)
T ss_dssp             ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred             cCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhcccccccccccccchhhhhhhhccccHHHHhhhhhHHHHH
Confidence                     12234455565541                                                 12567888


Q ss_pred             HHhhhhhcccCCCHHHHHHHHHhh
Q 010975          373 RRLEKRILVPLPDTEARRAMFESL  396 (496)
Q Consensus       373 rRf~~~I~~~~P~~eeR~~Il~~~  396 (496)
                      .|++.++.|...+.++..+|+...
T Consensus       258 gRi~~iv~f~~L~~~~l~~Il~~~  281 (364)
T d1um8a_         258 GRLPVLSTLDSISLEAMVDILQKP  281 (364)
T ss_dssp             TTCCEEEECCCCCHHHHHHHHHSS
T ss_pred             HHhcchhhHhhhhHHHHHHHHHHH
Confidence            899999999999999999998753

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.34  E-value=1.1e-13  Score=132.94  Aligned_cols=219  Identities=20%  Similarity=0.227  Sum_probs=131.8

Q ss_pred             hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccc----
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----  289 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~----  289 (496)
                      +.||.+...+++.+.+.....          ....|+|+||+|||||++|++|+...   ..+++.+++..+....    
T Consensus         1 ~~v~~S~~~~~~~~~~~~~a~----------~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~~~~~~~~~   70 (247)
T d1ny5a2           1 EYVFESPKMKEILEKIKKISC----------AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAE   70 (247)
T ss_dssp             CCCCCSHHHHHHHHHHHHHTT----------CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHH
T ss_pred             CeEecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhhhhcccHHH
Confidence            357777777777776644322          23579999999999999999999866   4568888886553221    


Q ss_pred             -cC----Ch---HHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEecc
Q 010975          290 -RG----DS---EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT  361 (496)
Q Consensus       290 -~G----~~---e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatT  361 (496)
                       .|    ..   ......+++.+..   ++|||||||.|....+.     ...+.+.+.-...+++......++.+|++|
T Consensus        71 lfg~~~~~~~~~~~~~~g~l~~a~g---GtL~l~~i~~L~~~~Q~-----~L~~~l~~~~~~~~~~~~~~~~~~RlI~~s  142 (247)
T d1ny5a2          71 LFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGELSLEAQA-----KLLRVIESGKFYRLGGRKEIEVNVRILAAT  142 (247)
T ss_dssp             HHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGCCHHHHH-----HHHHHHHHSEECCBTCCSBEECCCEEEEEE
T ss_pred             hcCcccCCcCCcccccCCHHHccCC---CEEEEeChHhCCHHHHH-----HHHHHHHhCCEEECCCCCceecCeEEEEec
Confidence             01    00   0001224555544   79999999988443211     011111111111222222222345567777


Q ss_pred             CCc-c------cccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhh
Q 010975          362 NLP-W------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEA  430 (496)
Q Consensus       362 n~p-~------~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A  430 (496)
                      +.+ .      .+++.|..|+.. +.+..|+..+|.+    |++.++.+.....       .....+++++.+..|.+..
T Consensus       143 ~~~l~~l~~~~~f~~~L~~~l~~-~~i~lPpLreR~~Di~~l~~~~l~~~~~~~-------~~~~~~ls~~al~~L~~~~  214 (247)
T d1ny5a2         143 NRNIKELVKEGKFREDLYYRLGV-IEIEIPPLRERKEDIIPLANHFLKKFSRKY-------AKEVEGFTKSAQELLLSYP  214 (247)
T ss_dssp             SSCHHHHHHTTSSCHHHHHHHTT-EEEECCCGGGCHHHHHHHHHHHHHHHHHHT-------TCCCCEECHHHHHHHHHSC
T ss_pred             CCCHHHHHHcCCCcHHHHhhcCe-eeecCCChhhchhhHhhhhhhhhhhhhhhc-------CCCCCCCCHHHHHHHHhCC
Confidence            654 2      367788888865 6777887776654    4455554322111       1223457788899999999


Q ss_pred             hccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHH
Q 010975          431 AMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEI  467 (496)
Q Consensus       431 ~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~  467 (496)
                      |.++++++.+.++.....+..      ..|+.+|+-.
T Consensus       215 WPGNl~EL~~~l~~a~~~~~~------~~I~~~dl~~  245 (247)
T d1ny5a2         215 WYGNVRELKNVIERAVLFSEG------KFIDRGELSC  245 (247)
T ss_dssp             CTTHHHHHHHHHHHHHHHCCS------SEECHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhCCC------CeECHHHccc
Confidence            999999988888766544332      2378888743

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=5.1e-13  Score=124.78  Aligned_cols=145  Identities=12%  Similarity=0.133  Sum_probs=99.1

Q ss_pred             cchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce-----------------------
Q 010975          220 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-----------------------  276 (496)
Q Consensus       220 G~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~-----------------------  276 (496)
                      +++++.++|...+...           ..++++||+||||+|||++|+.+|+.+...                       
T Consensus         6 w~~~~~~~l~~~~~~~-----------~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~   74 (207)
T d1a5ta2           6 WLRPDFEKLVASYQAG-----------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP   74 (207)
T ss_dssp             GGHHHHHHHHHHHHTT-----------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred             ccHHHHHHHHHHHHcC-----------CcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhcccc
Confidence            5566677777666432           234679999999999999999999977211                       


Q ss_pred             -eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcccc
Q 010975          277 -FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS  351 (496)
Q Consensus       277 -~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~  351 (496)
                       ++.+....-   ...-.-..++.+.+.+..    .+..|++|||+|.+..             ...+.|+..|+.   .
T Consensus        75 ~~~~~~~~~~---~~~i~~~~ir~l~~~~~~~~~~~~~kviIide~d~l~~-------------~a~n~Llk~lEe---p  135 (207)
T d1a5ta2          75 DYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD-------------AAANALLKTLEE---P  135 (207)
T ss_dssp             TEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH-------------HHHHHHHHHHTS---C
T ss_pred             ccchhhhhhc---ccccccchhhHHhhhhhhccccCccceEEechhhhhhh-------------hhhHHHHHHHHh---h
Confidence             111111000   001123445566655442    2345999999998742             244678888873   3


Q ss_pred             CcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHh
Q 010975          352 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFES  395 (496)
Q Consensus       352 ~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~  395 (496)
                      +..+.+|.+|+++..+.+++++|+. .+.|+.|+.++...+++.
T Consensus       136 ~~~~~fIl~t~~~~~ll~tI~SRc~-~i~~~~~~~~~~~~~L~~  178 (207)
T d1a5ta2         136 PAETWFFLATREPERLLATLRSRCR-LHYLAPPPEQYAVTWLSR  178 (207)
T ss_dssp             CTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHH
T ss_pred             cccceeeeeecChhhhhhhhcceeE-EEecCCCCHHHHHHHHHH
Confidence            4557788899999999999999994 599999999998888865

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.14  E-value=2.2e-11  Score=126.10  Aligned_cols=86  Identities=26%  Similarity=0.365  Sum_probs=61.0

Q ss_pred             hhhcchHHHHHHhhhhcccccCcccccc--ccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc-cccCC-
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD-  292 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~--~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~-~~~G~-  292 (496)
                      -|+|++++|+.|.-.+..+.++-..-..  .--.++++||.||||||||.|||.||+.++.||+.++++.+.. .|+|. 
T Consensus        15 yVvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~fTeaGYvG~D   94 (443)
T d1g41a_          15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE   94 (443)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred             cccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecceeeecceeecc
Confidence            3999999999999887544322111111  1223579999999999999999999999999999999998876 46654 


Q ss_pred             hHHHHHHHHH
Q 010975          293 SEKLIKVLFE  302 (496)
Q Consensus       293 ~e~~l~~lf~  302 (496)
                      .+..++.+++
T Consensus        95 Vesii~~L~~  104 (443)
T d1g41a_          95 VDSIIRDLTD  104 (443)
T ss_dssp             THHHHHHHHH
T ss_pred             hhHHHHHHHH
Confidence            3444444443

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.07  E-value=3e-11  Score=115.09  Aligned_cols=102  Identities=16%  Similarity=0.055  Sum_probs=66.8

Q ss_pred             CccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccC-
Q 010975          213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRG-  291 (496)
Q Consensus       213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G-  291 (496)
                      +.++|.-+.+.+.+.+.+......        ....|+++||+||||||||++|+++|.+++.+++.++++++.....+ 
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~~~~~~   75 (273)
T d1gvnb_           4 VNFTDKQFENRLNDNLEELIQGKK--------AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNF   75 (273)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHTTCC--------CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTH
T ss_pred             cccChHHHHHHHHHHHHHHHhccc--------CCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHHHhccC
Confidence            457777777777777777654321        23456899999999999999999999999999999999887654322 


Q ss_pred             --ChHHHHHHHHHHhhhcCCcceehhhHHHHHh
Q 010975          292 --DSEKLIKVLFELARHHAPSTIFLDEIDAIIS  322 (496)
Q Consensus       292 --~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~  322 (496)
                        .........+..+....+.+.+.++.+.+..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (273)
T d1gvnb_          76 DELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQ  108 (273)
T ss_dssp             HHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhHHHHHHHHhhccchHHHHHHHHHhh
Confidence              1122222233333433334444444444433

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.95  E-value=1.2e-10  Score=107.87  Aligned_cols=116  Identities=10%  Similarity=0.138  Sum_probs=83.2

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcc------eeeeeecccccccccCChHHHHHHHHHHhhhc----CCcceehhhHH
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKT------TFFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEID  318 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~------~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~----~p~ILfIDEID  318 (496)
                      +.++||+||||+|||++|..+++....      .++.+....   .-.  .-..++.+.+.+...    +..|++|||+|
T Consensus        15 ~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~---~~I--~Id~IR~i~~~~~~~~~~~~~KviIId~ad   89 (198)
T d2gnoa2          15 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---ENI--GIDDIRTIKDFLNYSPELYTRKYVIVHDCE   89 (198)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---SCB--CHHHHHHHHHHHTSCCSSSSSEEEEETTGG
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCc---CCC--CHHHHHHHHHHHhhCcccCCCEEEEEeCcc
Confidence            368999999999999999999997732      366665421   111  234566666665432    33599999999


Q ss_pred             HHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCH
Q 010975          319 AIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDT  386 (496)
Q Consensus       319 ~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~  386 (496)
                      .|.             ....++|+..|+.   .+..+++|.+|+.++.+.+++++||.. +.++.|..
T Consensus        90 ~l~-------------~~aqNaLLK~LEE---Pp~~t~fiLit~~~~~ll~TI~SRC~~-i~~~~p~~  140 (198)
T d2gnoa2          90 RMT-------------QQAANAFLKALEE---PPEYAVIVLNTRRWHYLLPTIKSRVFR-VVVNVPKE  140 (198)
T ss_dssp             GBC-------------HHHHHHTHHHHHS---CCTTEEEEEEESCGGGSCHHHHTTSEE-EECCCCHH
T ss_pred             ccc-------------hhhhhHHHHHHhC---CCCCceeeeccCChhhCHHHHhcceEE-EeCCCchH
Confidence            884             2345778888873   344466777889999999999999955 88887753

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.63  E-value=7.6e-09  Score=97.46  Aligned_cols=60  Identities=20%  Similarity=0.170  Sum_probs=48.4

Q ss_pred             CCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975          210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV  285 (496)
Q Consensus       210 ~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l  285 (496)
                      .|...-++++|.++..++|.+..                .+.++|+||+|+|||+|++.++++.+..+..+++...
T Consensus         6 ~p~~~~~~f~GR~~el~~l~~~~----------------~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~~~~~   65 (283)
T d2fnaa2           6 SPKDNRKDFFDREKEIEKLKGLR----------------APITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKF   65 (283)
T ss_dssp             SCCCSGGGSCCCHHHHHHHHHTC----------------SSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             CCCCChhhCCChHHHHHHHHhcc----------------CCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEEeccc
Confidence            35556789999999999887631                2579999999999999999999999888777765433

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.22  E-value=1.1e-06  Score=77.35  Aligned_cols=25  Identities=36%  Similarity=0.616  Sum_probs=22.6

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcc
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKT  275 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~  275 (496)
                      .|+|.||||+|||||++.++..++.
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCC
Confidence            4899999999999999999998843

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=9.1e-07  Score=75.87  Aligned_cols=31  Identities=29%  Similarity=0.706  Sum_probs=28.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      ++++|.|||||||||+|+.||++++.+++..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~~~id~   33 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS   33 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCEEEEH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeEee
Confidence            5799999999999999999999999998743

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.00  E-value=1.3e-06  Score=76.59  Aligned_cols=36  Identities=22%  Similarity=0.259  Sum_probs=32.0

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV  285 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l  285 (496)
                      +.|+|.|||||||||+|++||+.+|.+++.......
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~~~~   43 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREF   43 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCeEeeehHHH
Confidence            679999999999999999999999999987765443

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.85  E-value=3e-06  Score=73.71  Aligned_cols=32  Identities=41%  Similarity=0.708  Sum_probs=28.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      ..++|.|||||||||+|+.||+.+|.+++.++
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~   36 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSGLKYINVG   36 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCcEEech
Confidence            36899999999999999999999999988653

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.81  E-value=4.2e-06  Score=73.01  Aligned_cols=36  Identities=28%  Similarity=0.422  Sum_probs=32.2

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV  285 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l  285 (496)
                      +-++|.|||||||||+|++++++++.+++.++...+
T Consensus         5 ~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~   40 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL   40 (176)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHH
Confidence            458899999999999999999999999999876544

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.79  E-value=4.4e-06  Score=73.29  Aligned_cols=32  Identities=34%  Similarity=0.601  Sum_probs=29.0

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      ++++|.|+||+||||+++.+|+.+|.+|+.++
T Consensus         1 k~I~liG~~GsGKsTi~k~La~~l~~~~~d~d   32 (161)
T d1viaa_           1 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSD   32 (161)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCEEecC
Confidence            36899999999999999999999999999754

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.72  E-value=6.9e-06  Score=72.40  Aligned_cols=31  Identities=23%  Similarity=0.440  Sum_probs=28.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      +.++|.|+||+||||+++.+|+.+|.+|+..
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~   33 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGYEFVDT   33 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEeh
Confidence            5688999999999999999999999998864

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.65  E-value=1.4e-05  Score=69.43  Aligned_cols=33  Identities=15%  Similarity=0.336  Sum_probs=29.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA  282 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~  282 (496)
                      +-|+|+||||+||||+|++|+++++.+++.++.
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~   36 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV   36 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCeEEeec
Confidence            568999999999999999999999988887764

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.63  E-value=9.8e-06  Score=71.01  Aligned_cols=31  Identities=23%  Similarity=0.504  Sum_probs=27.6

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      .++|.|+||+||||+++.+|+.+|.+|+.++
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l~~~fiD~D   33 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD   33 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCeEeec
Confidence            3677799999999999999999999998654

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=1.7e-05  Score=68.93  Aligned_cols=32  Identities=28%  Similarity=0.477  Sum_probs=27.9

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS  281 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~  281 (496)
                      +-++|.|||||||||+|+.|++.++.+++..+
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d   38 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDGD   38 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHTCEEEEGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCeechh
Confidence            45788999999999999999999998876554

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.58  E-value=1.5e-05  Score=68.76  Aligned_cols=29  Identities=28%  Similarity=0.523  Sum_probs=25.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFF  278 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i  278 (496)
                      +-++|+||||+||||+|+.|+++++..++
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~~~   31 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNSAY   31 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence            45899999999999999999999987654

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.58  E-value=1.8e-05  Score=68.78  Aligned_cols=27  Identities=44%  Similarity=0.624  Sum_probs=24.4

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcc
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKT  275 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~  275 (496)
                      +.+++|.||||+||||+++.||+.++.
T Consensus         5 ~~~I~i~G~~GsGKTT~~~~La~~l~~   31 (174)
T d1y63a_           5 GINILITGTPGTGKTSMAEMIAAELDG   31 (174)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence            456999999999999999999999864

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=1.3e-05  Score=69.71  Aligned_cols=24  Identities=38%  Similarity=0.686  Sum_probs=22.9

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ++|+|+|||||||||+++.++..+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            689999999999999999999988

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.47  E-value=1.8e-05  Score=68.64  Aligned_cols=29  Identities=24%  Similarity=0.188  Sum_probs=24.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFF  278 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i  278 (496)
                      ..|+|+|+||+||||+|++||+.++..++
T Consensus         7 ~~I~l~G~~GsGKTTia~~La~~L~~~~~   35 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQVTLNQQGG   35 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHHCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence            34889999999999999999999975543

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.42  E-value=3.2e-05  Score=69.11  Aligned_cols=32  Identities=16%  Similarity=0.323  Sum_probs=27.5

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      .|.-|+|.||||+||||+|+.||+.+|...+.
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~   36 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLS   36 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence            34678999999999999999999999876554

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.42  E-value=2.5e-05  Score=69.68  Aligned_cols=32  Identities=16%  Similarity=0.303  Sum_probs=27.8

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      |..++|.||||+||||+|+.|++.+|.+.+.+
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~   34 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKYQLAHISA   34 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHCCcEEeh
Confidence            35699999999999999999999998876543

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.38  E-value=3.5e-05  Score=67.75  Aligned_cols=30  Identities=23%  Similarity=0.471  Sum_probs=26.5

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      .++|.||||+||||+|+.||+.+|..++.+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~~~~i~~   31 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYGIPHIST   31 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceech
Confidence            388999999999999999999998776654

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.37  E-value=4.6e-05  Score=67.88  Aligned_cols=31  Identities=29%  Similarity=0.467  Sum_probs=26.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      ..++|.||||+||||+|+.||+.+|..++.+
T Consensus         4 ~riil~G~pGSGKsT~a~~La~~~g~~~i~~   34 (190)
T d1ak2a1           4 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT   34 (190)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence            3577899999999999999999998776553

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.36  E-value=0.00016  Score=66.39  Aligned_cols=78  Identities=19%  Similarity=0.213  Sum_probs=50.2

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc----------------------------ccCCh
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------------------WRGDS  293 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~----------------------------~~G~~  293 (496)
                      ++++..-++|+||||+|||+++..+|...   +..++.++..+-...                            .....
T Consensus        22 Gi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (242)
T d1tf7a2          22 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL  101 (242)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred             CCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCCHHHHHHHHHHcCCChHHHhhcCceEEEEeecchhhH
Confidence            34556679999999999999999999876   444444432110000                            00122


Q ss_pred             HHHHHHHHHHhhhcCCcceehhhHHHHHh
Q 010975          294 EKLIKVLFELARHHAPSTIFLDEIDAIIS  322 (496)
Q Consensus       294 e~~l~~lf~~a~~~~p~ILfIDEID~L~~  322 (496)
                      ...+..+........|.+++||.++.+..
T Consensus       102 ~~~~~~i~~~i~~~~~~~vviDs~~~~~~  130 (242)
T d1tf7a2         102 EDHLQIIKSEINDFKPARIAIDSLSALAR  130 (242)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEECHHHHTS
T ss_pred             HHHHHHHHHHHHhcCCceeeeecchhhhc
Confidence            33444555556667788999999988754

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=2.4e-05  Score=69.31  Aligned_cols=30  Identities=23%  Similarity=0.199  Sum_probs=25.2

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      ..|+|+|+||+||||+|+.||..++.+++.
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~~l~~~~~~   49 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEEYLVCHGIP   49 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence            347799999999999999999999765443

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.30  E-value=4.9e-05  Score=67.14  Aligned_cols=30  Identities=33%  Similarity=0.543  Sum_probs=26.4

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      .++|.||||+||||+|+.||+.+|...+.+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i~~   31 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST   31 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceEch
Confidence            478999999999999999999998776644

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=0.00015  Score=64.05  Aligned_cols=32  Identities=16%  Similarity=0.228  Sum_probs=26.4

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATECKTTFF  278 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i  278 (496)
                      +.+.-++++|+||+||||+|+.++...+...+
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~~~~~i   43 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV   43 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGGTCEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcCCEEE
Confidence            34456899999999999999999998775544

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.23  E-value=7.9e-05  Score=66.62  Aligned_cols=31  Identities=19%  Similarity=0.413  Sum_probs=26.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      .-++|.||||+||||+|+.||+.+|...+.+
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~~~g~~~is~   39 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA   39 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCeEEeh
Confidence            3588999999999999999999998766553

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=97.21  E-value=6.2e-05  Score=68.37  Aligned_cols=33  Identities=15%  Similarity=0.290  Sum_probs=27.9

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      +..+.++|+|||+||||+++.+|++-++..++.
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vis   83 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS   83 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHHhCCEEEe
Confidence            444789999999999999999999998765544

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=7.2e-05  Score=66.19  Aligned_cols=30  Identities=27%  Similarity=0.547  Sum_probs=26.2

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      .++|.||||+||||+|+.||+.+|.+.+..
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g~~~i~~   33 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFHAAHLAT   33 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceEec
Confidence            478889999999999999999998776554

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.21  E-value=7.3e-05  Score=66.12  Aligned_cols=30  Identities=30%  Similarity=0.514  Sum_probs=26.4

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      .|+|.||||+||||+|+.||+.+|.+.+.+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g~~~is~   31 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYGTPHIST   31 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceeeH
Confidence            378999999999999999999998876653

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.20  E-value=7.9e-05  Score=66.86  Aligned_cols=34  Identities=18%  Similarity=0.468  Sum_probs=27.9

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV  286 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~  286 (496)
                      .++|.||||+||||+|+.||+.+|..++  +.+++.
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~g~~~i--s~gdll   41 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHFELKHL--SSGDLL   41 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHBCCEEE--EHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHH
Confidence            5888999999999999999999987665  444443

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.15  E-value=7.8e-05  Score=66.68  Aligned_cols=36  Identities=25%  Similarity=0.412  Sum_probs=29.0

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV  286 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~  286 (496)
                      ++-++|.||||+||||+|+.||+.+|.+.+  +.+++.
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~~~g~~~i--s~g~ll   43 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQKYGYTHL--STGDLL   43 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHTCCEEE--EHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeeE--eccHHH
Confidence            356899999999999999999999987665  444443

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00011  Score=65.50  Aligned_cols=30  Identities=20%  Similarity=0.394  Sum_probs=25.9

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      .-|+|.||||+||||+|+.||+.+|...+.
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~g~~~i~   31 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS   31 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCceEc
Confidence            358999999999999999999999865543

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00027  Score=64.69  Aligned_cols=69  Identities=19%  Similarity=0.173  Sum_probs=43.3

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc--------------------ccCChHHHHHHHHHHhh
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--------------------WRGDSEKLIKVLFELAR  305 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~--------------------~~G~~e~~l~~lf~~a~  305 (496)
                      |.-++|.||+|+||||.+--+|..+   |..+.-+++...+..                    ...+....+....+.++
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~a~   88 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAK   88 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHHHH
Confidence            4568899999999999887788766   455555544332210                    11233445555566665


Q ss_pred             hcCCcceehhhH
Q 010975          306 HHAPSTIFLDEI  317 (496)
Q Consensus       306 ~~~p~ILfIDEI  317 (496)
                      .....+++||=.
T Consensus        89 ~~~~d~ilIDTa  100 (211)
T d2qy9a2          89 ARNIDVLIADTA  100 (211)
T ss_dssp             HTTCSEEEECCC
T ss_pred             HcCCCEEEeccC
Confidence            555578888844

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.14  E-value=9e-05  Score=62.92  Aligned_cols=24  Identities=38%  Similarity=0.556  Sum_probs=20.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +-|+|+||||+||||+|+.++.+.
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            347899999999999999987654

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.13  E-value=0.00021  Score=63.77  Aligned_cols=25  Identities=28%  Similarity=0.457  Sum_probs=22.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      .-|+++|.||+||||+|++||+.++
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3488999999999999999999874

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00011  Score=64.69  Aligned_cols=29  Identities=24%  Similarity=0.374  Sum_probs=25.5

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      .++|.||||+||||+|+.||+.++..++.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~~~~i~   30 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS   30 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence            47889999999999999999999876654

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00014  Score=65.62  Aligned_cols=29  Identities=34%  Similarity=0.507  Sum_probs=25.5

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      -|.+.||||+||+|+|+.||+.+|.+++.
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~iS   33 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLLD   33 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEC
Confidence            56788999999999999999999877653

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.95  E-value=0.0002  Score=64.87  Aligned_cols=28  Identities=32%  Similarity=0.605  Sum_probs=24.4

Q ss_pred             eeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          252 ILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      +.+-||||+||||+|+.||+.+|.+++.
T Consensus         6 IaIdGp~GsGKgT~ak~La~~lg~~~is   33 (223)
T d1q3ta_           6 IAIDGPASSGKSTVAKIIAKDFGFTYLD   33 (223)
T ss_dssp             EEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcEEC
Confidence            4566999999999999999999887654

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.95  E-value=0.00029  Score=66.97  Aligned_cols=48  Identities=15%  Similarity=0.065  Sum_probs=36.9

Q ss_pred             chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhh
Q 010975          216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .+++|.+..+++|.+.+.....         .....|.|+|+.|+|||+||+.+.+.
T Consensus        20 ~~~~gR~~~~~~i~~~L~~~~~---------~~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          20 MTCYIREYHVDRVIKKLDEMCD---------LDSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHTT---------SSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceeCcHHHHHHHHHHHHhccC---------CCceEEEEECCCCCCHHHHHHHHHHh
Confidence            3588999999999888743211         11245789999999999999999875

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.93  E-value=0.00046  Score=62.97  Aligned_cols=34  Identities=18%  Similarity=0.206  Sum_probs=25.1

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      ++-++|.||+|+||||.+--+|..+   |.++.-+++
T Consensus         6 ~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~   42 (207)
T d1okkd2           6 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAG   42 (207)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEe
Confidence            3568899999999999877777766   445544444

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.91  E-value=0.00032  Score=70.36  Aligned_cols=95  Identities=15%  Similarity=0.190  Sum_probs=62.0

Q ss_pred             CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc---ceeeeeec-cccc
Q 010975          211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSVV  286 (496)
Q Consensus       211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~-s~l~  286 (496)
                      +..++++++-.+...+.+++.+..+             ..-+|+.||+|+||||+..++.++++   .+++.+-- -+..
T Consensus       133 ~~~~l~~LG~~~~~~~~l~~l~~~~-------------~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~  199 (401)
T d1p9ra_         133 TRLDLHSLGMTAHNHDNFRRLIKRP-------------HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD  199 (401)
T ss_dssp             TCCCGGGSCCCHHHHHHHHHHHTSS-------------SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC
T ss_pred             cchhhhhhcccHHHHHHHHHHHhhh-------------hceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcccc
Confidence            3345788877788888888776443             13488999999999999999998873   33443321 1110


Q ss_pred             c------cccCChHHHHHHHHHHhhhcCCcceehhhHH
Q 010975          287 S------KWRGDSEKLIKVLFELARHHAPSTIFLDEID  318 (496)
Q Consensus       287 ~------~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID  318 (496)
                      -      ...+.........+..+....|.||+|.|+-
T Consensus       200 ~~~~~q~~v~~~~~~~~~~~l~~~lR~dPDvi~igEiR  237 (401)
T d1p9ra_         200 IDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR  237 (401)
T ss_dssp             CSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred             cCCCCeeeecCCcCCCHHHHHHHHHhhcCCEEEecCcC
Confidence            0      0111112234556666778899999999994

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.00036  Score=59.75  Aligned_cols=23  Identities=30%  Similarity=0.274  Sum_probs=21.5

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      -+.|+|+||+|||||++.+++++
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999987

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.75  E-value=0.00097  Score=60.87  Aligned_cols=35  Identities=29%  Similarity=0.131  Sum_probs=21.2

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      .|.-++|.||+|+||||.+--+|..+   +.++.-+++
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~   48 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGA   48 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEe
Confidence            34568899999999999877777766   344444443

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=96.74  E-value=0.00034  Score=57.82  Aligned_cols=21  Identities=29%  Similarity=0.100  Sum_probs=17.1

Q ss_pred             CccceeeeeCCCCChhHHHHH
Q 010975          247 SPWKGILLFGPPGTGKTMLAK  267 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAr  267 (496)
                      ...+.++|.+|||+|||..+-
T Consensus         5 ~~~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTHH
T ss_pred             HcCCcEEEEcCCCCChhHHHH
Confidence            345789999999999997663

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.70  E-value=0.00028  Score=61.15  Aligned_cols=26  Identities=23%  Similarity=0.423  Sum_probs=23.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKT  275 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~  275 (496)
                      +-|+|.||||+||||+++.|++.++.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~   27 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRK   27 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999998854

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.70  E-value=0.0039  Score=56.81  Aligned_cols=35  Identities=29%  Similarity=0.270  Sum_probs=25.5

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      +|.-++|.||+|+||||.+--+|..+   +.++.-+++
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~   47 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA   47 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEee
Confidence            44568999999999999877777766   444444443

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.0011  Score=65.45  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=17.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHh
Q 010975          250 KGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~  271 (496)
                      +-++|+||||||||+++..+..
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~l~  185 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKLLA  185 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHHHHH
Confidence            4589999999999998755433

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.60  E-value=0.0016  Score=59.15  Aligned_cols=33  Identities=27%  Similarity=0.253  Sum_probs=25.0

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      +-++|.||+|+||||.+--+|..+   |..+.-+++
T Consensus        11 ~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~   46 (207)
T d1ls1a2          11 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA   46 (207)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEec
Confidence            447889999999999888888766   455555544

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.59  E-value=0.00061  Score=66.29  Aligned_cols=68  Identities=19%  Similarity=0.281  Sum_probs=45.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc--ceeeee-eccccc-------ccccCChHHHHHHHHHHhhhcCCcceehhhH
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK--TTFFNI-SASSVV-------SKWRGDSEKLIKVLFELARHHAPSTIFLDEI  317 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~--~~~i~v-~~s~l~-------~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEI  317 (496)
                      +++|+.||+|+||||+.++++....  .+++.+ +..++.       ....+...-....++..+....|..|++.|+
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR~~pd~iivgEi  244 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL  244 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEESCC
T ss_pred             CCEEEEeeccccchHHHHHHhhhcccccceeeccchhhhhcccccccceeccccchhHHHHHHHHhccCCCcccCCcc
Confidence            6899999999999999999999873  333333 111211       0111122223456677778889999999999

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=96.47  E-value=0.0019  Score=53.70  Aligned_cols=33  Identities=18%  Similarity=0.237  Sum_probs=25.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA  282 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~  282 (496)
                      +..+|.+|+|+|||+++-.++.+.+..++.+..
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~~~~~~~vli~~P   41 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNP   41 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHHHTTTCCEEEEES
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHcCCcEEEEcC
Confidence            568999999999999887777777766655543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.001  Score=60.03  Aligned_cols=28  Identities=29%  Similarity=0.249  Sum_probs=23.6

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhh
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ++++.+-++|+||||+|||+++..++..
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3556677999999999999999988764

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.001  Score=62.84  Aligned_cols=77  Identities=25%  Similarity=0.317  Sum_probs=49.0

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc----------------ccCChHHHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELARH  306 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~----------------~~G~~e~~l~~lf~~a~~  306 (496)
                      ++..+-+.|+||||+|||+++-.++...   +..+++++...-...                .....+..+..+-...+.
T Consensus        51 i~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~a~~~Gvd~d~v~~~~~~~~E~~~~~i~~l~~~  130 (263)
T d1u94a1          51 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS  130 (263)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred             ccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHHHHHhCCCHHHEEEecCCCHHHHHHHHHHHHhc
Confidence            4445568999999999999999888866   566676765322111                112234443333333444


Q ss_pred             cCCcceehhhHHHHHh
Q 010975          307 HAPSTIFLDEIDAIIS  322 (496)
Q Consensus       307 ~~p~ILfIDEID~L~~  322 (496)
                      ..+.+++||-+..+.+
T Consensus       131 ~~~~liViDSi~al~~  146 (263)
T d1u94a1         131 GAVDVIVVDSVAALTP  146 (263)
T ss_dssp             TCCSEEEEECGGGCCC
T ss_pred             CCCCEEEEECcccccc
Confidence            6678999998877653

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.43  E-value=0.00079  Score=61.20  Aligned_cols=38  Identities=18%  Similarity=0.306  Sum_probs=31.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh----cceeeeeecccccc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVS  287 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~s~l~~  287 (496)
                      .-++|+|.||+||||+|+.|++.+    +.+++.+++..+..
T Consensus        25 ~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~   66 (208)
T d1m7ga_          25 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF   66 (208)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHH
Confidence            458999999999999999999876    56777887766543

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.41  E-value=0.00051  Score=59.73  Aligned_cols=26  Identities=23%  Similarity=0.281  Sum_probs=22.9

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcce
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTT  276 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~  276 (496)
                      -++|.|+||+||||+++.+++.++.+
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~~~   28 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILDNQ   28 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            47889999999999999999998543

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.36  E-value=0.00086  Score=60.27  Aligned_cols=28  Identities=29%  Similarity=0.345  Sum_probs=22.5

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhh
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ++++..-++|+|+||+|||+++..++..
T Consensus        22 Gi~~G~~~~I~G~~G~GKT~la~~~~~~   49 (242)
T d1tf7a1          22 GLPIGRSTLVSGTSGTGKTLFSIQFLYN   49 (242)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            3456667999999999999999876543

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0019  Score=59.99  Aligned_cols=28  Identities=25%  Similarity=0.345  Sum_probs=24.4

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.+...+.|.||+|+|||||++.++..+
T Consensus        26 i~~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          26 IKQGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            4455679999999999999999999976

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.24  E-value=0.0013  Score=58.51  Aligned_cols=27  Identities=37%  Similarity=0.647  Sum_probs=23.5

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhccee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTF  277 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~  277 (496)
                      .|+|.||+|+|||++++.+++..+..+
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~~~~   28 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHSSIF   28 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHTTTE
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCCce
Confidence            488999999999999999999875443

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.0014  Score=58.01  Aligned_cols=27  Identities=37%  Similarity=0.630  Sum_probs=23.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcce
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTT  276 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~  276 (496)
                      +.|+|.||+|+|||+|++.++++....
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~~~   28 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYPDS   28 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCcc
Confidence            458999999999999999999987433

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.19  E-value=0.0023  Score=59.68  Aligned_cols=36  Identities=14%  Similarity=0.066  Sum_probs=26.6

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeec
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA  282 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~  282 (496)
                      .+..-++|.|+||+|||+++..+|..+    |.++..++.
T Consensus        33 ~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~   72 (277)
T d1cr2a_          33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML   72 (277)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeee
Confidence            344558999999999999988888643    556665543

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0013  Score=57.68  Aligned_cols=29  Identities=28%  Similarity=0.368  Sum_probs=24.7

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ++++..-++|+||||+|||+++..+|...
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45666779999999999999999998765

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.99  E-value=0.0013  Score=57.49  Aligned_cols=25  Identities=24%  Similarity=0.328  Sum_probs=21.9

Q ss_pred             eeeeCCCCChhHHHHHHHHhhhcce
Q 010975          252 ILLFGPPGTGKTMLAKAVATECKTT  276 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l~~~  276 (496)
                      |-|.||+|+||||+|+.|+..++..
T Consensus        25 IgI~G~~GSGKSTla~~L~~~l~~~   49 (198)
T d1rz3a_          25 LGIDGLSRSGKTTLANQLSQTLREQ   49 (198)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhccc
Confidence            5589999999999999999988644

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=95.93  E-value=0.003  Score=59.59  Aligned_cols=29  Identities=41%  Similarity=0.541  Sum_probs=25.3

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhhcce
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATECKTT  276 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l~~~  276 (496)
                      ..+.++|+|||+||||+++.+|++.+|..
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~lg~~  131 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHTVPFY  131 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHHhcch
Confidence            34679999999999999999999998653

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.0054  Score=56.56  Aligned_cols=24  Identities=21%  Similarity=0.355  Sum_probs=21.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.++|+||..+|||++.|+++-..
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~l~~   65 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTALIA   65 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHHHHHH
Confidence            568999999999999999998744

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.76  E-value=0.0039  Score=58.75  Aligned_cols=77  Identities=22%  Similarity=0.316  Sum_probs=49.6

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc----------------ccCChHHHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELARH  306 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~----------------~~G~~e~~l~~lf~~a~~  306 (496)
                      ++..+-..++||||||||+++..++...   |..+++++...-.+.                .....+..+..+-...+.
T Consensus        54 ip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~l~~~  133 (268)
T d1xp8a1          54 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRS  133 (268)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred             ccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHHHHHHhCCCchhEEEEcCCCHHHHHHHHHHHHhc
Confidence            3444568899999999999999988766   566777775432211                112334443333333334


Q ss_pred             cCCcceehhhHHHHHh
Q 010975          307 HAPSTIFLDEIDAIIS  322 (496)
Q Consensus       307 ~~p~ILfIDEID~L~~  322 (496)
                      ..+.+|++|=+..+.+
T Consensus       134 ~~~~liIiDSi~al~~  149 (268)
T d1xp8a1         134 GAIDVVVVDSVAALTP  149 (268)
T ss_dssp             TCCSEEEEECTTTCCC
T ss_pred             CCCcEEEEeccccccc
Confidence            5678999998888764

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.75  E-value=0.0038  Score=57.03  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=17.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHh
Q 010975          250 KGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~  271 (496)
                      +++++.+|+|+|||+++-..+.
T Consensus        59 ~~~~i~apTGsGKT~~~~~~~~   80 (237)
T d1gkub1          59 ESFAATAPTGVGKTSFGLAMSL   80 (237)
T ss_dssp             CCEECCCCBTSCSHHHHHHHHH
T ss_pred             CCEEEEecCCChHHHHHHHHHH
Confidence            6799999999999986655443

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0028  Score=57.49  Aligned_cols=29  Identities=24%  Similarity=0.227  Sum_probs=24.5

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ++++.+-++|+||||+|||+++..++...
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            45666789999999999999999998643

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.57  E-value=0.0034  Score=54.92  Aligned_cols=25  Identities=20%  Similarity=0.484  Sum_probs=22.2

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      +-++|.||+|+||||+++.+.++..
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4588999999999999999998763

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.55  E-value=0.0022  Score=58.33  Aligned_cols=29  Identities=31%  Similarity=0.323  Sum_probs=24.2

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ++++.+-++|+||||+|||+++-.++...
T Consensus        32 Glp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          32 GIETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            35566779999999999999999888654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.28  E-value=0.012  Score=55.23  Aligned_cols=78  Identities=21%  Similarity=0.272  Sum_probs=48.3

Q ss_pred             ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccc-c---------------ccCChHHHHHHHHHHhh
Q 010975          245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS-K---------------WRGDSEKLIKVLFELAR  305 (496)
Q Consensus       245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~-~---------------~~G~~e~~l~~lf~~a~  305 (496)
                      +++..+-..|+||||+|||++|..++...   |..+++++...-.+ .               .....+..+..+-...+
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e~a~~~GvD~d~il~~~~~~~E~~~~~~~~l~~  135 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR  135 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHHHHHHhCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence            34555668999999999999997777655   66677777543221 1               11223333332222233


Q ss_pred             hcCCcceehhhHHHHHh
Q 010975          306 HHAPSTIFLDEIDAIIS  322 (496)
Q Consensus       306 ~~~p~ILfIDEID~L~~  322 (496)
                      ...+.+|+||-+..+.+
T Consensus       136 ~~~~~liIiDSi~al~~  152 (269)
T d1mo6a1         136 SGALDIVVIDSVAALVP  152 (269)
T ss_dssp             TTCEEEEEEECSTTCCC
T ss_pred             cCCCCEEEEeccccccc
Confidence            45567899998877764

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.28  E-value=0.0054  Score=52.61  Aligned_cols=30  Identities=17%  Similarity=0.072  Sum_probs=24.0

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhh---cceeeee
Q 010975          251 GILLFGPPGTGKTMLAKAVATEC---KTTFFNI  280 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l---~~~~i~v  280 (496)
                      -+-++|++|+|||||+..++.++   |.++..+
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vi   35 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTV   35 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            35699999999999999999987   4445444

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0039  Score=55.76  Aligned_cols=26  Identities=15%  Similarity=0.143  Sum_probs=22.7

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcce
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTT  276 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~  276 (496)
                      -|-|.||+|+||||+|+.|+..++..
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~~~   29 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLGQN   29 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhchh
Confidence            35689999999999999999998654

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.91  E-value=0.0048  Score=55.32  Aligned_cols=28  Identities=21%  Similarity=0.202  Sum_probs=23.8

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +++..-++|.||||+|||+++..+|...
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4455679999999999999999998755

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=94.88  E-value=0.019  Score=52.44  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=20.5

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .++|+||...|||++.|+++-..
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l~~   59 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTALIA   59 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhHHHH
Confidence            58999999999999999988744

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=94.73  E-value=0.0067  Score=50.71  Aligned_cols=21  Identities=29%  Similarity=0.406  Sum_probs=19.0

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      .|+|.|+||+|||+|++.+..
T Consensus         2 kivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            378999999999999999875

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.72  E-value=0.0097  Score=52.41  Aligned_cols=29  Identities=24%  Similarity=0.382  Sum_probs=24.3

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFF  278 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i  278 (496)
                      .+++||.|++|+|||++|-.+... |..++
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~-g~~lv   42 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR-GHRLI   42 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT-TCEEE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc-CCeEE
Confidence            478999999999999999988875 55554

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.66  E-value=0.01  Score=52.10  Aligned_cols=24  Identities=25%  Similarity=0.558  Sum_probs=21.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +-++|.||+|+|||+|++.+.++.
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            568999999999999999999765

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=94.59  E-value=0.0098  Score=53.52  Aligned_cols=30  Identities=20%  Similarity=0.367  Sum_probs=23.4

Q ss_pred             eeeeCCCCChhHHHHHHHHhhh--cceeeeee
Q 010975          252 ILLFGPPGTGKTMLAKAVATEC--KTTFFNIS  281 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l--~~~~i~v~  281 (496)
                      +++.||+|+|||||.+.+.+.+  +.....++
T Consensus         3 i~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn   34 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN   34 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred             EEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEe
Confidence            6899999999999999998755  34444443

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=94.58  E-value=0.014  Score=49.11  Aligned_cols=22  Identities=32%  Similarity=0.576  Sum_probs=19.6

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .|+|.|+||+|||+|.+++...
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999999753

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=94.46  E-value=0.011  Score=51.23  Aligned_cols=26  Identities=27%  Similarity=0.359  Sum_probs=23.5

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcce
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTT  276 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~  276 (496)
                      -|+|.|+=|+|||+++|++++.+|.+
T Consensus        35 ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          35 MVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             EEEEecCCCccHHHHHHHHHhhcccc
Confidence            48899999999999999999999654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.42  E-value=0.016  Score=50.08  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=20.1

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -|.|.|.||+|||+|++++...
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999864

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=94.40  E-value=0.0083  Score=52.56  Aligned_cols=27  Identities=22%  Similarity=0.333  Sum_probs=22.4

Q ss_pred             eeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          252 ILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      +-|+|++|+||||+|+.+ .+.|.+++.
T Consensus         6 IgitG~~gSGKstva~~l-~~~g~~~~~   32 (191)
T d1uf9a_           6 IGITGNIGSGKSTVAALL-RSWGYPVLD   32 (191)
T ss_dssp             EEEEECTTSCHHHHHHHH-HHTTCCEEE
T ss_pred             EEEECCCCCCHHHHHHHH-HHCCCeEEE
Confidence            558899999999999998 457877654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.19  E-value=0.013  Score=51.59  Aligned_cols=29  Identities=31%  Similarity=0.446  Sum_probs=23.9

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFF  278 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i  278 (496)
                      .+++||.||+|+|||++|-.+... |..++
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~-G~~lv   43 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINK-NHLFV   43 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT-TCEEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc-CCcee
Confidence            478999999999999999888765 55544

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.026  Score=54.34  Aligned_cols=24  Identities=25%  Similarity=0.379  Sum_probs=21.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ..|-++||||+|||||+.+++..+
T Consensus        55 ~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          55 LRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEeeCCCCCCHHHHHHHHHHHH
Confidence            347899999999999999998866

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=94.15  E-value=0.033  Score=47.53  Aligned_cols=21  Identities=48%  Similarity=0.648  Sum_probs=19.3

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      -+++.|+||+|||+|++.+..
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            599999999999999999865

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.15  E-value=0.012  Score=51.52  Aligned_cols=29  Identities=21%  Similarity=0.225  Sum_probs=24.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFF  278 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i  278 (496)
                      .-|.|.|+.|+||||+++.|++.++...+
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~l~~~~~   38 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKYKNDICL   38 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGGTTTEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            45789999999999999999999965443

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=94.03  E-value=0.024  Score=48.58  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=20.9

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      -.|++.|+||+|||+|++.+...-
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTTCCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            359999999999999999997643

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.014  Score=52.48  Aligned_cols=29  Identities=17%  Similarity=0.167  Sum_probs=23.3

Q ss_pred             eeeeCCCCChhHHHHHHHHhhh---cceeeee
Q 010975          252 ILLFGPPGTGKTMLAKAVATEC---KTTFFNI  280 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l---~~~~i~v  280 (496)
                      |.|.|+.|+||||+++.|++.+   |.+++.+
T Consensus         6 I~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~   37 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVEALCAAGHRAELL   37 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            5566999999999999999987   4555544

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.00  E-value=0.012  Score=53.00  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=21.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      +-++|.||+|+|||+|.+.+.....
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3478999999999999999998763

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.97  E-value=0.016  Score=50.64  Aligned_cols=29  Identities=24%  Similarity=0.360  Sum_probs=23.7

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTFF  278 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i  278 (496)
                      ..+|||.|++|+|||++|-.+... |..++
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~-g~~li   43 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR-GHRLV   43 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc-CCeEE
Confidence            478999999999999999887776 54443

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.91  E-value=0.013  Score=48.75  Aligned_cols=21  Identities=29%  Similarity=0.547  Sum_probs=19.2

Q ss_pred             eeeeCCCCChhHHHHHHHHhh
Q 010975          252 ILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~  272 (496)
                      ++|.|+||+|||+|+..+...
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999998763

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.89  E-value=0.013  Score=51.87  Aligned_cols=23  Identities=30%  Similarity=0.465  Sum_probs=20.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ++|+|.|+||+|||+|.+++...
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            47999999999999999999763

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=93.78  E-value=0.014  Score=48.96  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=19.8

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .|+|.|+||+|||+|.+++...
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999998763

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.63  E-value=0.035  Score=52.48  Aligned_cols=34  Identities=21%  Similarity=0.363  Sum_probs=25.1

Q ss_pred             eeeeCCCCChhHHHHHHHHhhh------cceeeeeecccc
Q 010975          252 ILLFGPPGTGKTMLAKAVATEC------KTTFFNISASSV  285 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l------~~~~i~v~~s~l  285 (496)
                      |-|.|++|+||||++..|...+      +..+..++..++
T Consensus        30 IGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf   69 (286)
T d1odfa_          30 IFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   69 (286)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             EEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence            4578999999999999987765      234555555554

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.63  E-value=0.033  Score=53.52  Aligned_cols=33  Identities=24%  Similarity=0.405  Sum_probs=25.5

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhh-----cceeeeeecc
Q 010975          251 GILLFGPPGTGKTMLAKAVATEC-----KTTFFNISAS  283 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~s  283 (496)
                      -+=|+||||+|||||...++..+     +.-++.++.+
T Consensus        53 ~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDps   90 (323)
T d2qm8a1          53 RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS   90 (323)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred             EEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccc
Confidence            47799999999999999999865     3345555554

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.58  E-value=0.013  Score=52.42  Aligned_cols=27  Identities=33%  Similarity=0.436  Sum_probs=23.2

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .++.-+.|.||.|+|||||.+.++..+
T Consensus        25 ~~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          25 EKGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhccc
Confidence            444568899999999999999999866

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.44  E-value=0.023  Score=49.97  Aligned_cols=29  Identities=21%  Similarity=0.337  Sum_probs=23.8

Q ss_pred             eeeeCCCCChhHHHHHHHHhhh---cceeeee
Q 010975          252 ILLFGPPGTGKTMLAKAVATEC---KTTFFNI  280 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l---~~~~i~v  280 (496)
                      |.|.|+.|+||||+++.|++.+   |.+++.+
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~   34 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL   34 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence            6788999999999999999987   4455544

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=93.43  E-value=0.015  Score=49.26  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=20.0

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .+++.|+||+|||+|++.+...
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            5899999999999999999764

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=93.30  E-value=0.019  Score=51.05  Aligned_cols=28  Identities=25%  Similarity=0.381  Sum_probs=23.2

Q ss_pred             eeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          252 ILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      +-|+|++|+||||+++.+. +.|.+++..
T Consensus         5 IgITG~igSGKStv~~~l~-~~G~~vida   32 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLFT-DLGVPLVDA   32 (205)
T ss_dssp             EEEECSTTSCHHHHHHHHH-TTTCCEEEH
T ss_pred             EEEECCCCCCHHHHHHHHH-HCCCeEEEc
Confidence            4589999999999999886 578877653

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=93.20  E-value=0.022  Score=50.90  Aligned_cols=27  Identities=30%  Similarity=0.471  Sum_probs=22.5

Q ss_pred             eeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975          252 ILLFGPPGTGKTMLAKAVATECKTTFFN  279 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l~~~~i~  279 (496)
                      +-|+|++|+||||+++.+. +.|.+++.
T Consensus         6 IgitG~igSGKStv~~~l~-~~G~~vid   32 (208)
T d1vhta_           6 VALTGGIGSGKSTVANAFA-DLGINVID   32 (208)
T ss_dssp             EEEECCTTSCHHHHHHHHH-HTTCEEEE
T ss_pred             EEEECCCcCCHHHHHHHHH-HCCCcEEE
Confidence            5589999999999999885 67876664

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.15  E-value=0.02  Score=49.19  Aligned_cols=22  Identities=23%  Similarity=0.459  Sum_probs=19.2

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -+++.|+||+|||+|++.+...
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3789999999999999998753

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.01  E-value=0.021  Score=52.33  Aligned_cols=27  Identities=19%  Similarity=0.361  Sum_probs=23.2

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .....+-|.||+|+|||||.+.++.-.
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          29 KEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCcchhhHhccCCC
Confidence            444568999999999999999999865

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.99  E-value=0.026  Score=51.49  Aligned_cols=31  Identities=26%  Similarity=0.291  Sum_probs=22.9

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      +..+|.|++|+|||||..++........-.+
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~v  126 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEV  126 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCc
Confidence            5678999999999999999987655444333

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.97  E-value=0.023  Score=52.08  Aligned_cols=27  Identities=26%  Similarity=0.410  Sum_probs=23.3

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||+|+|||||.+.++.-.
T Consensus        24 ~~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          24 HEGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            444568899999999999999999866

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=92.96  E-value=0.021  Score=48.78  Aligned_cols=22  Identities=27%  Similarity=0.585  Sum_probs=19.3

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .|.|.|+||+|||+|++++...
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999753

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.92  E-value=0.022  Score=48.30  Aligned_cols=21  Identities=14%  Similarity=0.351  Sum_probs=19.0

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      -|+|.|+||+|||+|+..+..
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998875

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.91  E-value=0.022  Score=52.92  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=16.9

Q ss_pred             ceeeeeCCCCChhHHH-HHHHHhh
Q 010975          250 KGILLFGPPGTGKTML-AKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~L-AralA~~  272 (496)
                      ..+++.|+||||||++ +..++..
T Consensus        15 ~~~lI~g~aGTGKTt~l~~rv~~l   38 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVITNKIAHL   38 (306)
T ss_dssp             SEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEeeCCccHHHHHHHHHHHH
Confidence            4589999999999975 4444443

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=92.90  E-value=0.035  Score=53.00  Aligned_cols=36  Identities=17%  Similarity=0.132  Sum_probs=27.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhc-----ceeeeeecccc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECK-----TTFFNISASSV  285 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~-----~~~i~v~~s~l  285 (496)
                      --|-|.|++|+||||+|+.|+..+.     ..+..++..++
T Consensus        81 ~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F  121 (308)
T d1sq5a_          81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             EEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeee
Confidence            4577999999999999999999873     44555555554

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=92.90  E-value=0.019  Score=48.87  Aligned_cols=23  Identities=22%  Similarity=0.429  Sum_probs=20.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .-++|.|+||+|||+|..++...
T Consensus        14 ~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          14 GKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35999999999999999999664

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.85  E-value=0.021  Score=53.10  Aligned_cols=28  Identities=25%  Similarity=0.426  Sum_probs=24.2

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.+...+.|.||+|+|||||++.++...
T Consensus        38 i~~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          38 IPAGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             ECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            3455679999999999999999999866

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.85  E-value=0.023  Score=49.72  Aligned_cols=23  Identities=35%  Similarity=0.627  Sum_probs=20.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..|+|.|+||+|||+|..++.++
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37999999999999999999865

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.83  E-value=0.029  Score=51.58  Aligned_cols=26  Identities=35%  Similarity=0.388  Sum_probs=21.8

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +..-.+|+|+||+|||+++-.+|..+
T Consensus        28 pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          28 AGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34568899999999999999888754

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=92.80  E-value=0.021  Score=48.59  Aligned_cols=23  Identities=17%  Similarity=0.369  Sum_probs=20.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      ..|++.|.||+|||+|+..+...
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46999999999999999998764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.73  E-value=0.025  Score=48.13  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=19.0

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      -|+|.|.+|+|||+|++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999999876

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.71  E-value=0.021  Score=49.10  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=19.8

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .|+|.|+||+|||||..++.++
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999763

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=92.69  E-value=0.025  Score=52.20  Aligned_cols=28  Identities=25%  Similarity=0.341  Sum_probs=24.1

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.+..-+.|.||+|+|||||++.++...
T Consensus        25 i~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          25 AQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4555678999999999999999999866

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.67  E-value=0.026  Score=47.98  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=19.7

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -|+|.|++|+|||+|++.+...
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999999763

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.67  E-value=0.025  Score=52.51  Aligned_cols=28  Identities=32%  Similarity=0.490  Sum_probs=24.3

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.+..-+.|.||+|+|||||++.+....
T Consensus        37 i~~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          37 LRPGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            3455679999999999999999999876

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.65  E-value=0.025  Score=49.04  Aligned_cols=21  Identities=29%  Similarity=0.457  Sum_probs=19.0

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      -|+|.|+||+|||+|++.+.+
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            388999999999999999875

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.58  E-value=0.025  Score=53.40  Aligned_cols=28  Identities=25%  Similarity=0.329  Sum_probs=24.2

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.+..-+.|.||+|+|||||++.|+..+
T Consensus        59 i~~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          59 IEKGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            4455668999999999999999999876

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.52  E-value=0.027  Score=48.05  Aligned_cols=21  Identities=33%  Similarity=0.479  Sum_probs=19.2

Q ss_pred             eeeeCCCCChhHHHHHHHHhh
Q 010975          252 ILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~  272 (496)
                      +++.|++|+|||+|++.+...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            899999999999999998753

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.51  E-value=0.028  Score=49.86  Aligned_cols=24  Identities=33%  Similarity=0.383  Sum_probs=21.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +-|.|.|+.|+||||+++.+++.+
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            347888999999999999999987

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=92.50  E-value=0.026  Score=51.98  Aligned_cols=27  Identities=30%  Similarity=0.411  Sum_probs=23.1

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+-|.||+|+||||+++.++...
T Consensus        27 ~~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          27 KDGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            344568899999999999999999866

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=92.46  E-value=0.028  Score=47.65  Aligned_cols=21  Identities=29%  Similarity=0.447  Sum_probs=19.1

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      .|+|.|++|+|||+|++.+..
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            588999999999999999866

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.46  E-value=0.067  Score=49.82  Aligned_cols=33  Identities=24%  Similarity=0.228  Sum_probs=23.7

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      ..-||+|..|+|||.++-..+...   |..+..+-.
T Consensus       105 m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~P  140 (264)
T d1gm5a3         105 MNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVP  140 (264)
T ss_dssp             CCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECS
T ss_pred             ceeeeeccccccccHHHHHHHHHHHhcccceeEEee
Confidence            467999999999999877666543   555544433

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.43  E-value=0.027  Score=51.85  Aligned_cols=23  Identities=30%  Similarity=0.574  Sum_probs=20.6

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      -+.|.||+|+||||+.+.++...
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            35588999999999999999977

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.43  E-value=0.031  Score=51.49  Aligned_cols=27  Identities=30%  Similarity=0.402  Sum_probs=23.3

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+-|.||+|+|||||.+.++...
T Consensus        30 ~~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          30 KDGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            344568899999999999999999976

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=92.42  E-value=0.027  Score=51.54  Aligned_cols=27  Identities=26%  Similarity=0.470  Sum_probs=23.2

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+.|.||+|+||||+.+.++.-.
T Consensus        24 ~~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          24 ESGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            344458899999999999999999976

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.30  E-value=0.027  Score=48.09  Aligned_cols=21  Identities=38%  Similarity=0.645  Sum_probs=19.3

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      -++|.|++|+|||+|++.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999999986

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=92.28  E-value=0.027  Score=51.85  Aligned_cols=27  Identities=22%  Similarity=0.236  Sum_probs=23.1

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ....-+-|.||+|+|||||++.++...
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          29 PAGQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             CSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            344568899999999999999999866

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.27  E-value=0.031  Score=47.69  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=19.5

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -+++.|++|+|||+|++.+...
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3799999999999999998863

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.20  E-value=0.035  Score=49.96  Aligned_cols=29  Identities=14%  Similarity=0.143  Sum_probs=24.9

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhhccee
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATECKTTF  277 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~  277 (496)
                      |+=+.|.|+-|+||||+++.|++.++...
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~~   30 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWH   30 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhcC
Confidence            45688999999999999999999985443

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=92.19  E-value=0.25  Score=43.02  Aligned_cols=27  Identities=22%  Similarity=0.271  Sum_probs=20.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcce
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTT  276 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~  276 (496)
                      +++++.-|+|+|||.++..........
T Consensus        41 ~~vlv~apTGsGKT~~~~~~~~~~~~~   67 (206)
T d1oywa2          41 RDCLVVMPTGGGKSLCYQIPALLLNGL   67 (206)
T ss_dssp             CCEEEECSCHHHHHHHHHHHHHHSSSE
T ss_pred             CCEEEEcCCCCCCcchhhhhhhhccCc
Confidence            579999999999998875554444333

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.17  E-value=0.032  Score=47.88  Aligned_cols=21  Identities=29%  Similarity=0.534  Sum_probs=19.1

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      .+++.|++|+|||+|++.+..
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998866

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=92.17  E-value=0.035  Score=50.17  Aligned_cols=28  Identities=21%  Similarity=0.273  Sum_probs=23.7

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFF  278 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i  278 (496)
                      -+-|+|+.||||||+|+.++...|...+
T Consensus         3 iIgiTG~igSGKsTva~~l~e~~g~~~i   30 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMSNYSAVKY   30 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSCEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCeEE
Confidence            3679999999999999999998775544

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.16  E-value=0.032  Score=47.46  Aligned_cols=21  Identities=29%  Similarity=0.528  Sum_probs=18.8

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      -|++.|.+|+|||+|++.+..
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999998876

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.00  E-value=0.035  Score=47.17  Aligned_cols=21  Identities=29%  Similarity=0.381  Sum_probs=19.0

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      -|+|.|.+|+|||+|++.+..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            379999999999999999875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.00  E-value=0.034  Score=47.37  Aligned_cols=21  Identities=24%  Similarity=0.447  Sum_probs=19.2

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      -|++.|.+|+|||+|++.+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999999985

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.99  E-value=0.035  Score=47.34  Aligned_cols=21  Identities=29%  Similarity=0.575  Sum_probs=18.8

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      -+++.|++|+|||+|++.+..
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            388999999999999999865

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.95  E-value=0.026  Score=52.11  Aligned_cols=27  Identities=26%  Similarity=0.396  Sum_probs=23.4

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ....-+.|.||+|+||||+++.++.-.
T Consensus        29 ~~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            444568999999999999999999965

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.90  E-value=0.033  Score=47.53  Aligned_cols=21  Identities=24%  Similarity=0.441  Sum_probs=19.2

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      -|+|.|.||+|||+|++.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999998876

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.84  E-value=0.038  Score=46.65  Aligned_cols=21  Identities=29%  Similarity=0.472  Sum_probs=19.2

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      -|++.|++|+|||+|++.+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999999876

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.80  E-value=0.031  Score=50.03  Aligned_cols=26  Identities=23%  Similarity=0.401  Sum_probs=23.1

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKT  275 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~  275 (496)
                      +-+.|.|+-|+||||+++.|++.+..
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            45889999999999999999998843

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.80  E-value=0.034  Score=47.20  Aligned_cols=22  Identities=23%  Similarity=0.487  Sum_probs=19.6

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -|++.|++|+|||+|+..+...
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999998763

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.74  E-value=0.038  Score=47.70  Aligned_cols=20  Identities=30%  Similarity=0.632  Sum_probs=18.7

Q ss_pred             eeeeCCCCChhHHHHHHHHh
Q 010975          252 ILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~  271 (496)
                      |++.|.+|||||+|++.+.+
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.73  E-value=0.034  Score=47.10  Aligned_cols=21  Identities=38%  Similarity=0.629  Sum_probs=19.1

Q ss_pred             eeeeCCCCChhHHHHHHHHhh
Q 010975          252 ILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~  272 (496)
                      +++.|+||+|||+|++.+...
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998763

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=91.64  E-value=0.038  Score=51.80  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=16.9

Q ss_pred             ceeeeeCCCCChhHHH-HHHHHhh
Q 010975          250 KGILLFGPPGTGKTML-AKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~L-AralA~~  272 (496)
                      ..+++.|+||||||++ ++.++..
T Consensus        25 g~~lV~g~aGSGKTt~l~~ri~~l   48 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVLTHRIAYL   48 (318)
T ss_dssp             SCEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEecCCccHHHHHHHHHHHH
Confidence            4689999999999964 4444443

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.56  E-value=0.052  Score=53.32  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=26.7

Q ss_pred             cceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975          249 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       249 ~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      .+|+++.|++|+|||++++.+..++   +.+++.++.
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~   86 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP   86 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             cceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            3799999999999999988776654   556666654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=91.55  E-value=0.033  Score=48.52  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=19.5

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      .|.|.|+||+|||||.+++.+
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHhcC
Confidence            599999999999999999975

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.52  E-value=0.091  Score=49.49  Aligned_cols=35  Identities=14%  Similarity=0.249  Sum_probs=24.2

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhc---ceeeeeecccc
Q 010975          251 GILLFGPPGTGKTMLAKAVATECK---TTFFNISASSV  285 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~s~l  285 (496)
                      -|-++|++|+||||+++++.+.++   .....+...++
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsf   43 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF   43 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCC
Confidence            367999999999999999999874   45555655554

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.52  E-value=0.038  Score=46.87  Aligned_cols=22  Identities=23%  Similarity=0.372  Sum_probs=19.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHh
Q 010975          250 KGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~  271 (496)
                      .-|+|.|++|+|||+|++.+..
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3589999999999999999875

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.52  E-value=0.042  Score=46.80  Aligned_cols=22  Identities=41%  Similarity=0.723  Sum_probs=19.0

Q ss_pred             eeeeCCCCChhHHHHHHHHhhh
Q 010975          252 ILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +++.|++|+|||+|++.+...-
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEECCCCcCHHHHHHHHhCCc
Confidence            7899999999999999987643

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.47  E-value=0.039  Score=47.26  Aligned_cols=21  Identities=24%  Similarity=0.439  Sum_probs=19.2

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      -|+|.|.+|+|||+|++.+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            499999999999999998876

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.45  E-value=0.042  Score=51.07  Aligned_cols=27  Identities=19%  Similarity=0.298  Sum_probs=23.0

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+-|.||+|+|||||+++++...
T Consensus        26 ~~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          26 RAGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            344568899999999999999999865

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.33  E-value=0.041  Score=46.43  Aligned_cols=20  Identities=25%  Similarity=0.434  Sum_probs=18.5

Q ss_pred             eeeeCCCCChhHHHHHHHHh
Q 010975          252 ILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~  271 (496)
                      |++.|.+|+|||+|++.+..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999875

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.28  E-value=0.046  Score=46.54  Aligned_cols=20  Identities=35%  Similarity=0.576  Sum_probs=18.6

Q ss_pred             eeeeCCCCChhHHHHHHHHh
Q 010975          252 ILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~  271 (496)
                      +++.|++|+|||+|++.+..
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998866

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.27  E-value=0.029  Score=52.18  Aligned_cols=28  Identities=18%  Similarity=0.298  Sum_probs=24.1

Q ss_pred             cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          246 LSPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       246 ~~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      +.+..-+.|.||+|+|||||++.++...
T Consensus        41 i~~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          41 IEKGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            3455679999999999999999999866

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.25  E-value=0.042  Score=46.93  Aligned_cols=20  Identities=35%  Similarity=0.595  Sum_probs=18.6

Q ss_pred             eeeeCCCCChhHHHHHHHHh
Q 010975          252 ILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~  271 (496)
                      |++.|.+|+|||+|++.+..
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999999865

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.23  E-value=0.047  Score=46.63  Aligned_cols=21  Identities=33%  Similarity=0.582  Sum_probs=19.0

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      -|++.|+||+|||+|+..+..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999988876

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.22  E-value=0.047  Score=46.33  Aligned_cols=22  Identities=23%  Similarity=0.486  Sum_probs=19.6

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -|++.|.+|+|||+|++.+...
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999998763

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.22  E-value=0.046  Score=46.89  Aligned_cols=21  Identities=33%  Similarity=0.548  Sum_probs=19.3

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      -+++.|.+|+|||+|++.+..
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999999875

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.22  E-value=0.065  Score=47.92  Aligned_cols=31  Identities=26%  Similarity=0.202  Sum_probs=25.4

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      +-|.|.|+-|+||||+++.+++.+......+
T Consensus         4 k~I~iEG~DGsGKST~~~~L~~~L~~~~~~~   34 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILYKKLQPNCKLL   34 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHTTTSEEEE
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHhCCEEE
Confidence            3477889999999999999999986554444

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.20  E-value=0.048  Score=46.25  Aligned_cols=21  Identities=24%  Similarity=0.431  Sum_probs=19.1

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      -|+|.|.+|+|||+|++.+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999999875

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.07  E-value=0.067  Score=49.34  Aligned_cols=23  Identities=30%  Similarity=0.502  Sum_probs=20.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -.|+|.|.||+|||+++.+|..+
T Consensus        33 l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          33 LTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             cEEEEECCCCCcHHHHHHHHhCC
Confidence            47999999999999999999864

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.04  E-value=0.017  Score=52.95  Aligned_cols=31  Identities=29%  Similarity=0.385  Sum_probs=19.8

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975          250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI  280 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v  280 (496)
                      +..+|.|++|+|||||+.++........-.+
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~v  128 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPELGLRTNEI  128 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC---------
T ss_pred             ceEEEECCCCccHHHHHHhhccHhHhhhccc
Confidence            4567889999999999999987665443333

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.00  E-value=0.046  Score=46.88  Aligned_cols=22  Identities=23%  Similarity=0.374  Sum_probs=19.5

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -|++.|++|+|||+|+..+...
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999998764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=90.91  E-value=0.052  Score=46.25  Aligned_cols=21  Identities=24%  Similarity=0.479  Sum_probs=19.1

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      -|++.|.+|+|||+|++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999999865

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.71  E-value=0.056  Score=45.89  Aligned_cols=21  Identities=19%  Similarity=0.449  Sum_probs=18.8

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      -+++.|++|+|||+|++.+..
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998775

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.66  E-value=0.054  Score=46.30  Aligned_cols=20  Identities=40%  Similarity=0.682  Sum_probs=18.6

Q ss_pred             eeeeCCCCChhHHHHHHHHh
Q 010975          252 ILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~  271 (496)
                      |+|.|++|+|||+|++.+..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998875

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.63  E-value=0.16  Score=45.67  Aligned_cols=23  Identities=39%  Similarity=0.430  Sum_probs=20.4

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      -.+|+|.-|+||||+.+.+.+..
T Consensus         5 v~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEeeCCCCCHHHHHHHHHhcC
Confidence            47899999999999999998754

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.54  E-value=0.056  Score=45.94  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=19.8

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .|.|.|.||+|||+|.+++.+.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999999763

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.42  E-value=0.061  Score=46.38  Aligned_cols=22  Identities=27%  Similarity=0.341  Sum_probs=19.6

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -+++.|.+|+|||+|++.+...
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999988763

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.40  E-value=0.055  Score=47.26  Aligned_cols=20  Identities=35%  Similarity=0.604  Sum_probs=18.6

Q ss_pred             eeeeCCCCChhHHHHHHHHh
Q 010975          252 ILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~  271 (496)
                      |++.|++|+|||+|++.+..
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            88999999999999998875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=90.40  E-value=0.04  Score=47.45  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=20.0

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -.+++.|+||+|||+|++.+...
T Consensus        18 ~KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          18 LRILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35999999999999999998653

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.25  E-value=0.038  Score=47.26  Aligned_cols=22  Identities=41%  Similarity=0.545  Sum_probs=18.1

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -+++.|++|+|||+|++.+...
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999988653

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.23  E-value=0.03  Score=46.90  Aligned_cols=22  Identities=27%  Similarity=0.585  Sum_probs=19.6

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .|.|.|.||+|||+|+.++..+
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.20  E-value=0.067  Score=45.57  Aligned_cols=21  Identities=24%  Similarity=0.430  Sum_probs=19.1

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      -+++.|++|+|||+|++.+..
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999999876

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=90.18  E-value=0.03  Score=47.79  Aligned_cols=24  Identities=29%  Similarity=0.239  Sum_probs=21.3

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhc
Q 010975          251 GILLFGPPGTGKTMLAKAVATECK  274 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~  274 (496)
                      -.+|+||.|+|||++..||.-.++
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            478999999999999999998764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=90.17  E-value=0.059  Score=49.47  Aligned_cols=27  Identities=30%  Similarity=0.320  Sum_probs=23.2

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+-|.||.|+||||+.+.++...
T Consensus        30 ~~Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          30 PRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            344458899999999999999999976

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.06  E-value=0.043  Score=46.90  Aligned_cols=20  Identities=35%  Similarity=0.566  Sum_probs=8.6

Q ss_pred             eeeeCCCCChhHHHHHHHHh
Q 010975          252 ILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~  271 (496)
                      |++.|.+|||||+|++.+..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999988875

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.00  E-value=0.063  Score=46.33  Aligned_cols=21  Identities=33%  Similarity=0.463  Sum_probs=19.0

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      -++|.|.+|+|||+|++.+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            379999999999999998876

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=89.90  E-value=0.07  Score=45.76  Aligned_cols=22  Identities=27%  Similarity=0.555  Sum_probs=19.8

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .|.|.|.+|+|||+|+.++...
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=89.90  E-value=0.047  Score=47.04  Aligned_cols=21  Identities=33%  Similarity=0.531  Sum_probs=18.9

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      .|-|.|+||+|||+|..++.+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999865

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=89.86  E-value=0.071  Score=48.82  Aligned_cols=27  Identities=30%  Similarity=0.352  Sum_probs=23.2

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+-|.||.|+|||||.+.++..+
T Consensus        26 ~~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          26 EEGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            444457799999999999999999977

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.74  E-value=0.15  Score=44.94  Aligned_cols=32  Identities=28%  Similarity=0.288  Sum_probs=25.7

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKTTFFNISA  282 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~  282 (496)
                      +.++.+|+|+|||.++-.++.+++.+.+.+..
T Consensus        87 ~~ll~~~tG~GKT~~a~~~~~~~~~~~Liv~p  118 (206)
T d2fz4a1          87 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVP  118 (206)
T ss_dssp             EEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred             CcEEEeCCCCCceehHHhHHHHhcCceeEEEc
Confidence            45788999999999999999888777655543

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.74  E-value=0.068  Score=46.22  Aligned_cols=21  Identities=29%  Similarity=0.351  Sum_probs=19.1

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      -++|.|.+|+|||+|++.+.+
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            489999999999999999876

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=89.45  E-value=0.13  Score=47.35  Aligned_cols=36  Identities=22%  Similarity=0.213  Sum_probs=29.4

Q ss_pred             ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecc
Q 010975          248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS  283 (496)
Q Consensus       248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s  283 (496)
                      .++-+++.|.=|+||||++-++|..+   |.++.-+++.
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            45678899999999999999998877   6777766643

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=89.42  E-value=0.066  Score=45.39  Aligned_cols=22  Identities=14%  Similarity=0.268  Sum_probs=19.9

Q ss_pred             ceeeeeCCCCChhHHHHHHHHh
Q 010975          250 KGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~  271 (496)
                      ..|.|.|+|++|||+|.+++..
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4699999999999999999965

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.41  E-value=0.073  Score=46.21  Aligned_cols=21  Identities=29%  Similarity=0.343  Sum_probs=18.6

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      -|+|.|++|+|||+|++.+..
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999988765

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=89.23  E-value=0.11  Score=45.22  Aligned_cols=33  Identities=18%  Similarity=0.164  Sum_probs=27.2

Q ss_pred             ceeeeeCC-CCChhHHHHHHHHhhh---cceeeeeec
Q 010975          250 KGILLFGP-PGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       250 ~~vLL~GP-pGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      +.++++|- +|+|||+++-.+|..+   |.++..++.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~   38 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP   38 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECc
Confidence            46889998 6999999999998877   677777764

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.10  E-value=0.079  Score=48.95  Aligned_cols=27  Identities=26%  Similarity=0.422  Sum_probs=23.2

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      .+..-+-|.||.|+|||||++.++...
T Consensus        28 ~~Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          28 NKGDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            344458899999999999999999976

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.01  E-value=0.059  Score=46.21  Aligned_cols=21  Identities=33%  Similarity=0.504  Sum_probs=19.0

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      .|.|.|.||+|||||++++.+
T Consensus         3 ~VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999975

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=88.93  E-value=0.08  Score=48.19  Aligned_cols=26  Identities=31%  Similarity=0.408  Sum_probs=22.0

Q ss_pred             CccceeeeeCCCCChhHHHHHHHHhh
Q 010975          247 SPWKGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       247 ~~~~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      .+..-+-|.||.|+|||||.+.++..
T Consensus        23 ~~Gei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          23 RAGEILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             ETTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            34456889999999999999999884

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.37  E-value=0.098  Score=45.10  Aligned_cols=19  Identities=37%  Similarity=0.614  Sum_probs=17.8

Q ss_pred             eeeeeCCCCChhHHHHHHH
Q 010975          251 GILLFGPPGTGKTMLAKAV  269 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAral  269 (496)
                      -|+|.|.+|+|||+|++.+
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999998

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=88.21  E-value=0.64  Score=42.03  Aligned_cols=54  Identities=19%  Similarity=0.122  Sum_probs=34.3

Q ss_pred             hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975          217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA  282 (496)
Q Consensus       217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~  282 (496)
                      .-..+..+.+.+.+.+..+            .+...||+|.+|+|||.++-..+...   |..++.+..
T Consensus        56 lt~~Q~~~~~~i~~~~~~~------------~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~P  112 (233)
T d2eyqa3          56 TTPDQAQAINAVLSDMCQP------------LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP  112 (233)
T ss_dssp             CCHHHHHHHHHHHHHHHSS------------SCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECS
T ss_pred             cchhHHHHHHHHHHHHhcc------------CccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEcc
Confidence            3334555555555555332            23578999999999999877666544   666655544

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.74  E-value=0.16  Score=43.65  Aligned_cols=23  Identities=22%  Similarity=0.284  Sum_probs=20.2

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -.|++.|++|+|||+|++.+...
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999988763

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.62  E-value=0.22  Score=42.94  Aligned_cols=22  Identities=36%  Similarity=0.584  Sum_probs=17.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHh
Q 010975          250 KGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~  271 (496)
                      ++.|+++|+|+|||.++-.++.
T Consensus        24 ~n~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          24 TNCLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEeCCCCcHHHHHHHHHH
Confidence            4688999999999987665554

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.81  E-value=0.16  Score=45.23  Aligned_cols=22  Identities=27%  Similarity=0.537  Sum_probs=19.3

Q ss_pred             ceeeeeCCCCChhHHHHHHHHh
Q 010975          250 KGILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~  271 (496)
                      .-|||.|++|+|||+|++.+..
T Consensus         7 ~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3589999999999999998854

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=84.96  E-value=0.21  Score=47.91  Aligned_cols=25  Identities=28%  Similarity=0.373  Sum_probs=22.5

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcc
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKT  275 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~  275 (496)
                      -|.|-|+-|+||||+++.+++.++.
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~   32 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASG   32 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             EEEEECCccCCHHHHHHHHHHHhcc
Confidence            5788999999999999999998853

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.94  E-value=0.19  Score=42.93  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=19.5

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      -+++.|..|+|||+|++.+...
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999654

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.88  E-value=0.16  Score=46.93  Aligned_cols=23  Identities=26%  Similarity=0.432  Sum_probs=19.8

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      --+|+||.|+|||++.+||+-.+
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Confidence            35899999999999999996654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=84.87  E-value=0.52  Score=40.09  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=19.9

Q ss_pred             eeeeeCCCCChhHHHHHHHHhh
Q 010975          251 GILLFGPPGTGKTMLAKAVATE  272 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~  272 (496)
                      +|-+.|.|++|||||..++.+.
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEEeCCCCcHHHHHHHHHHh
Confidence            5889999999999999999863

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=83.11  E-value=0.38  Score=43.76  Aligned_cols=34  Identities=29%  Similarity=0.368  Sum_probs=26.5

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecc
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS  283 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s  283 (496)
                      +-+++.|.=|+||||++-.+|..+   |.++..+++.
T Consensus        21 ~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D   57 (279)
T d1ihua2          21 GLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD   57 (279)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            347788999999999877777766   7777777764

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.82  E-value=0.2  Score=43.64  Aligned_cols=18  Identities=50%  Similarity=0.743  Sum_probs=15.8

Q ss_pred             ceeeeeCCCCChhHHHHH
Q 010975          250 KGILLFGPPGTGKTMLAK  267 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAr  267 (496)
                      +++++.+|+|+|||+++-
T Consensus        41 ~~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             SCEEEECSSHHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHHH
Confidence            579999999999998763

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=82.66  E-value=0.31  Score=45.69  Aligned_cols=24  Identities=38%  Similarity=0.602  Sum_probs=21.6

Q ss_pred             ceeeeeCCCCChhHHHHHHHHhhh
Q 010975          250 KGILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       250 ~~vLL~GPpGtGKT~LAralA~~l  273 (496)
                      ..++|.|++|+|||+|+..+++..
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHHHH
Confidence            459999999999999999999866

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.04  E-value=0.3  Score=46.83  Aligned_cols=22  Identities=27%  Similarity=0.534  Sum_probs=19.1

Q ss_pred             eeeeCCCCChhHHHHHHHHhhh
Q 010975          252 ILLFGPPGTGKTMLAKAVATEC  273 (496)
Q Consensus       252 vLL~GPpGtGKT~LAralA~~l  273 (496)
                      -+|+||.|+|||++..||.-.+
T Consensus        28 ~~i~G~NGsGKS~ileAi~~~l   49 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAISFVL   49 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5899999999999999996544

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.00  E-value=0.3  Score=41.34  Aligned_cols=21  Identities=29%  Similarity=0.555  Sum_probs=18.7

Q ss_pred             eeeeeCCCCChhHHHHHHHHh
Q 010975          251 GILLFGPPGTGKTMLAKAVAT  271 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~  271 (496)
                      -++|.|..|+|||++++.+..
T Consensus         4 KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            489999999999999998754

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=81.05  E-value=0.29  Score=46.75  Aligned_cols=25  Identities=32%  Similarity=0.316  Sum_probs=22.1

Q ss_pred             eeeeeCCCCChhHHHHHHHHhhhcc
Q 010975          251 GILLFGPPGTGKTMLAKAVATECKT  275 (496)
Q Consensus       251 ~vLL~GPpGtGKT~LAralA~~l~~  275 (496)
                      -|.|-|+-|+||||+++.+++.++.
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3788999999999999999998843