Citrus Sinensis ID: 010976

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490------
Protein Sequence
MSAAVEEPQFQNGVASTDEPKPEPAADPKVEETKETLIQPPPSTEQTEKQHPSTEQTEKQPPSTEQTLNPALRKDEGNRTFTMRELLTELKSEGEDSVTDASQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADVLAGIITG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHccccHHHHccccccccHHHHcHHccccccccHHHHHHHHHHHHHcccccHHHHHccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHccHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHcccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHccccccHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHcccccccccccccccHHHccccccccccHHHHHHHHHHccccccccccccccHHHHHccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHcEEEEEccccccccccccccHHHHHEEcHHHHHccccccccccccccccccccccccccEEEEEcccEEEEccccccccccccEEEEEcccccEEEEEccHHHHcHHHHHHHHHHHHHHccccHEHEEEEcc
Coil and Loop (DISEMBL)
msaaveepqfqngvastdepkpepaadpkveetketliqpppsteqtekqhpsteqtekqppsteqtlnpalrkdegnrTFTMRELLTELksegedsvtdasqgntphqLAEQNNAAMELINSvtgvdeegrSRQRILTFAAKRYANAIernpedydALYNWALVLQEsadnvsldstspskDALLEEACKKYDeatrlcptlHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAedtlrtggtvnprevspnelysQSAIYIAAAHALKPSYSVYSSALRLVRSmlplpylkagyltappagipvaphsdwkrsqfvlnheglqqasKNEQKQVTRslsgrtgdfspdrrairievpdivsvsacadltlppgaglcietihgpvflvADSWEALDGWLDAIRLVYTIYARGKADVLAGIITG
Flexible Loop (DISEMBL)
msaaveepqfqngvastdepkpepaadpkveetketliqpppsteqtekqhpsteqtekqppsteqtlnpalrkdegnrTFTMRELLTELKSEGEDSVTDASQGNTPHQLAEQNNAAMELINSvtgvdeegrsRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEglqqaskneqkqvtrslsgrtgdfspdrraIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADVLAGIITG
Low Complexity Region (SEG)
MSAAVEEPQFQNGVASTDEPKPEPAADPKVEETKETLIQPPPSTEQTEKQHPSTEQTEKQPPSTEQTLNPALRKDEGNRTFTMRELLTELKSEGEDSVTDASQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADVLAGIITG
Disordered region (IsUnstruct)
***************************************************************************************************************************************RILTFAAKRYANAIERNPEDYDALYNWALVLQE*****************LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAK*********ELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVL********************************AIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADVLAGII**
Disordered Region (DISOPRED)
*****EE***********************EETKETLIQPPPSTEQTEKQHPSTEQTEKQPPSTEQTLNPALRKDEGNRTFTMRELLTELKSEGEDSVTDASQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKN*********************AIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADVLAGIITG
Disordered Region (DISEMBL)
*******************************************************************LNPALRKDEGNRTFTMRELLTELK***************PHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESAD********PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRA*********EELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQ*****************TGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADVLAGIITG
Disordered Region (DISPRO)
*******************************************************************************TFT********KSE**************HQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQAS********************DRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADVLAGIITG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSAAVEEPQFQNGVASTDEPKPEPAADPKVEETKETLIQPPPSTEQTEKQHPSTEQTEKQPPSTEQTLNPALRKDEGNRTFTMRELLTELKSEGEDSVTDASQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADVLAGIITG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	496	2.2.26 [Sep-21-2011]
P56558	1036	UDP-N-acetylglucosamine--	yes	no	0.258	0.123	0.276	0.0007
Q8CGY8	1046	UDP-N-acetylglucosamine--	yes	no	0.258	0.122	0.276	0.0007
O15294	1046	UDP-N-acetylglucosamine--	yes	no	0.258	0.122	0.276	0.0007
P81436	1046	UDP-N-acetylglucosamine--	yes	no	0.258	0.122	0.276	0.0007
Q27HV0	1046	UDP-N-acetylglucosamine--	yes	no	0.258	0.122	0.276	0.0007

>sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Rattus norvegicus GN=Ogt PE=1 SV=1

 Score = 45.8 bits (107), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 35/163 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A + Y  A+E  PE   A  N A VLQ+                 L+EA   Y EA R+ 
Sbjct: 336 AVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------------LQEALMHYKEAIRIS 381

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           PT  DA+ N    + +   ++G           A + Y +A+Q+N     A +N   ++ 
Sbjct: 382 PTFADAYSNMGNTLKEMQDVQG-----------ALQCYTRAIQINPAFADAHSNLA-SIH 429

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 303
           + S  +P          AI+ +R A++L+ DF  A  NL   L
Sbjct: 430 KDSGNIP---------EAIASYRTALKLKPDFPDAYCNLAHCL 463

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.
Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 5EC: 5

>sp|Q8CGY8|OGT1_MOUSE UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Mus musculus GN=Ogt PE=1 SV=2

 Score = 45.8 bits (107), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 35/163 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A + Y  A+E  PE   A  N A VLQ+                 L+EA   Y EA R+ 
Sbjct: 346 AVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------------LQEALMHYKEAIRIS 391

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           PT  DA+ N    + +   ++G           A + Y +A+Q+N     A +N   ++ 
Sbjct: 392 PTFADAYSNMGNTLKEMQDVQG-----------ALQCYTRAIQINPAFADAHSNLA-SIH 439

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 303
           + S  +P          AI+ +R A++L+ DF  A  NL   L
Sbjct: 440 KDSGNIP---------EAIASYRTALKLKPDFPDAYCNLAHCL 473

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3

 Score = 45.8 bits (107), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 35/163 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A + Y  A+E  PE   A  N A VLQ+                 L+EA   Y EA R+ 
Sbjct: 346 AVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------------LQEALMHYKEAIRIS 391

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           PT  DA+ N    + +   ++G           A + Y +A+Q+N     A +N   ++ 
Sbjct: 392 PTFADAYSNMGNTLKEMQDVQG-----------ALQCYTRAIQINPAFADAHSNLA-SIH 439

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 303
           + S  +P          AI+ +R A++L+ DF  A  NL   L
Sbjct: 440 KDSGNIP---------EAIASYRTALKLKPDFPDAYCNLAHCL 473

Isoform 2, the mitochondrial isoform (mOGT), is cytotoxic and triggers apoptosis in several cell types including INS1, an insulinoma cell line.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1 SV=2

 Score = 45.8 bits (107), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 35/163 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A + Y  A+E  PE   A  N A VLQ+                 L+EA   Y EA R+ 
Sbjct: 346 AVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------------LQEALMHYKEAIRIS 391

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           PT  DA+ N    + +   ++G           A + Y +A+Q+N     A +N   ++ 
Sbjct: 392 PTFADAYSNMGNTLKEMQDVQG-----------ALQCYTRAIQINPAFADAHSNLA-SIH 439

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 303
           + S  +P          AI+ +R A++L+ DF  A  NL   L
Sbjct: 440 KDSGNIP---------EAIASYRTALKLKPDFPDAYCNLAHCL 473

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Oryctolagus cuniculus (taxid: 9986)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1

 Score = 45.8 bits (107), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 35/163 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A + Y  A+E  PE   A  N A VLQ+                 L+EA   Y EA R+ 
Sbjct: 346 AVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------------LQEALMHYKEAIRIS 391

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           PT  DA+ N    + +   ++G           A + Y +A+Q+N     A +N   ++ 
Sbjct: 392 PTFADAYSNMGNTLKEMQDVQG-----------ALQCYTRAIQINPAFADAHSNLA-SIH 439

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 303
           + S  +P          AI+ +R A++L+ DF  A  NL   L
Sbjct: 440 KDSGNIP---------EAIASYRTALKLKPDFPDAYCNLAHCL 473

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
255555737	505	conserved hypothetical protein [Ricinus	0.915	0.899	0.822	0.0
225426605	500	PREDICTED: uncharacterized protein LOC10	0.983	0.976	0.742	0.0
449456793	550	PREDICTED: uncharacterized protein LOC10	0.973	0.878	0.745	0.0
356535272	534	PREDICTED: uncharacterized protein LOC10	0.961	0.893	0.747	0.0
356535274	540	PREDICTED: uncharacterized protein LOC10	0.955	0.877	0.733	0.0
224075226	380	predicted protein [Populus trichocarpa]	0.762	0.994	0.897	0.0
356576620	528	PREDICTED: uncharacterized protein LOC10	0.981	0.922	0.712	0.0
365222856	569	Hop-interacting protein THI002 [Solanum	0.854	0.745	0.798	0.0
297742432	425	unnamed protein product [Vitis vinifera]	0.832	0.971	0.814	0.0
449528708	430	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.790	0.911	0.857	0.0

>gi|255555737|ref|XP_002518904.1| conserved hypothetical protein [Ricinus communis] gi|223541891|gb|EEF43437.1| conserved hypothetical protein [Ricinus communis]

 Score =  791 bits (2042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/473 (82%), Positives = 418/473 (88%), Gaps = 19/473 (4%)

Query: 25  AADPKVEETKETLIQPPPSTEQTEKQHPSTEQTEKQPPSTEQTLNPALRKDEGNRTFTMR 84
            ADPK EE KE  IQ   + E               P S +Q   P LRKDEG+RTFTMR
Sbjct: 51  GADPKAEERKEAPIQLKEAYE---------------PQSDDQNARPELRKDEGSRTFTMR 95

Query: 85  ELLTELKSEGEDSVTD-ASQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAK 143
           ELL+ELKSE  D VT   SQ +TPH    QNNAAMELINSVTG DEEGRSRQRILTFAA+
Sbjct: 96  ELLSELKSEEADDVTTPQSQQSTPHL---QNNAAMELINSVTGADEEGRSRQRILTFAAR 152

Query: 144 RYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 203
           RYA+AIERNPEDYDALYNWALVLQESADNVS DSTSPSKDALLEEACKKYDEATRLCPTL
Sbjct: 153 RYASAIERNPEDYDALYNWALVLQESADNVSPDSTSPSKDALLEEACKKYDEATRLCPTL 212

Query: 204 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 263
           HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS
Sbjct: 213 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 272

Query: 264 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVS 323
           AIVPAREKQTIV+TAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG +NP++VS
Sbjct: 273 AIVPAREKQTIVKTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGAINPKDVS 332

Query: 324 PNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSD 383
           PNELYSQSAIYIAAAHALKP+YSVYSSALRLVRSMLPLPYLK GYLTAPPAG  +APHSD
Sbjct: 333 PNELYSQSAIYIAAAHALKPNYSVYSSALRLVRSMLPLPYLKVGYLTAPPAGKSIAPHSD 392

Query: 384 WKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL 443
           WK+SQFVLNHEGLQQ SK +QKQ+ +SLSGRT   + D++AI+IEVPDIVSVSAC+DLTL
Sbjct: 393 WKKSQFVLNHEGLQQVSKLDQKQLPQSLSGRTDVTNSDKKAIKIEVPDIVSVSACSDLTL 452

Query: 444 PPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADVLAGIITG 496
           PPGAGLC++T+HGPVFLVADSWE+LDGWLDAIR VYTIYARGK++VLAGI+TG
Sbjct: 453 PPGAGLCVDTVHGPVFLVADSWESLDGWLDAIRSVYTIYARGKSEVLAGIVTG 505

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426605|ref|XP_002272828.1| PREDICTED: uncharacterized protein LOC100232876 [Vitis vinifera]

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/508 (74%), Positives = 416/508 (81%), Gaps = 20/508 (3%)

Query: 1   MSAAVEEPQFQNGVASTDEPKPEPAADPKVEETKETLIQPPPSTEQTEKQHPSTEQTEKQ 60
           M++  +E + QNG     E  PE   +PKV    E   +     EQT  Q    + T   
Sbjct: 1   MASPSDESELQNGGG---EAAPESVPEPKVGVNTEAEAKVDGDPEQTVIQSNDADNT--- 54

Query: 61  PPSTEQTLNPALRKDEGNRTFTMRELLTELK-SEGEDSVTDASQGNTPHQLA-------- 111
            PS EQ+  P L+KDEG++TFTMRELL+ELK  EG  +  +    +  H  +        
Sbjct: 55  -PSAEQSAKPELQKDEGSQTFTMRELLSELKDGEGNSAAREGETHDASHHYSSESTQQQH 113

Query: 112 --EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQES 169
             + N+ AM+LINSVTGVDEEGRSRQRIL FAA+RYA+AIERN EDYDALYNWALVLQES
Sbjct: 114 HIDHNDPAMDLINSVTGVDEEGRSRQRILAFAARRYASAIERNSEDYDALYNWALVLQES 173

Query: 170 ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE 229
           ADNV  DS+SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE
Sbjct: 174 ADNVGPDSSSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE 233

Query: 230 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 289
           LWKQAT+NYEKAVQLNWNSPQALNNWGLALQELSAIVP REKQTIVRTAISKFRAAIQLQ
Sbjct: 234 LWKQATRNYEKAVQLNWNSPQALNNWGLALQELSAIVPVREKQTIVRTAISKFRAAIQLQ 293

Query: 290 FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS 349
           FDFHRAIYNLGTVLYGLAEDTLR G  V+ +EVSPNELYSQSAIYIAAAHALKP+YSVY 
Sbjct: 294 FDFHRAIYNLGTVLYGLAEDTLRAGAIVD-KEVSPNELYSQSAIYIAAAHALKPNYSVYR 352

Query: 350 SALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTR 409
           SALRLVRSMLPLPYLK GYL APPAG PVAPH DWKR+QFVLNHEGLQQ +K EQKQ  +
Sbjct: 353 SALRLVRSMLPLPYLKVGYLAAPPAGNPVAPHGDWKRTQFVLNHEGLQQLNKVEQKQTPQ 412

Query: 410 SLSGRTGD-FSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEAL 468
           +LSGR+GD    D+ AI+++VPDIVSVSACADLTLP GAGLCI+TIHGPVFLVADSWE+L
Sbjct: 413 TLSGRSGDAVHIDKAAIKVDVPDIVSVSACADLTLPAGAGLCIDTIHGPVFLVADSWESL 472

Query: 469 DGWLDAIRLVYTIYARGKADVLAGIITG 496
           DGW DAIRLVYTI+ARGK+DVLAGIITG
Sbjct: 473 DGWFDAIRLVYTIFARGKSDVLAGIITG 500

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456793|ref|XP_004146133.1| PREDICTED: uncharacterized protein LOC101213929 [Cucumis sativus]

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/506 (74%), Positives = 411/506 (81%), Gaps = 23/506 (4%)

Query: 6   EEPQFQNGVASTDEPKPEPAADPKVEETKETLIQPPPSTEQTEKQHPSTEQTEKQPPSTE 65
           E     NGV  ++   P       +     T +  P   E  E   PS   TE       
Sbjct: 53  ESESVSNGVPDSEPESPRKQLSESIHLHVVTGVTDPSVEEHKETSTPSNGNTEN------ 106

Query: 66  QTLNPALRKDEGNRTFTMRELLTELKSE-GEDSVTDAS----QGNT--------PHQ-LA 111
             L PALRKDEG+RTFTMRELL  LK E G DS+ ++     +GN+        PHQ  +
Sbjct: 107 --LQPALRKDEGSRTFTMRELLNGLKGEDGSDSLNESEGERPEGNSGYSLNQDSPHQPYS 164

Query: 112 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESAD 171
           EQ+ AAMELINSVTGVDEEGRSRQRILTFAA+RYA+AIERN +DYDALYNWALVLQESAD
Sbjct: 165 EQSRAAMELINSVTGVDEEGRSRQRILTFAARRYASAIERNGQDYDALYNWALVLQESAD 224

Query: 172 NVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 231
           NVS DSTSPSKDALLEEACKKYDEAT LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW
Sbjct: 225 NVSPDSTSPSKDALLEEACKKYDEATHLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 284

Query: 232 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 291
           KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV+TAISKFRAAIQLQFD
Sbjct: 285 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVKTAISKFRAAIQLQFD 344

Query: 292 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSA 351
           FHRAIYNLGTVLYGLAEDTLRTGG+ N ++VSPNELYSQSAIYIAAAHALKP+YSVYSSA
Sbjct: 345 FHRAIYNLGTVLYGLAEDTLRTGGSGNVKDVSPNELYSQSAIYIAAAHALKPNYSVYSSA 404

Query: 352 LRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQAS-KNEQKQVTRS 410
           LRLVRSMLPLPYLK GYLTAPP G P+APHSDWKRSQF LNH+ LQ+ +   EQ Q + S
Sbjct: 405 LRLVRSMLPLPYLKVGYLTAPPVGRPLAPHSDWKRSQFFLNHDVLQKLNIGGEQIQTSPS 464

Query: 411 LSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDG 470
           + GR+G      R I++E+PDIVSVSACADLTLPPGAGLCI+TIHGP+FLVADSW+ LDG
Sbjct: 465 ILGRSGSTLNGDRTIKVEIPDIVSVSACADLTLPPGAGLCIDTIHGPIFLVADSWDTLDG 524

Query: 471 WLDAIRLVYTIYARGKADVLAGIITG 496
           WLDAIRLVYTIYARGK +VLAGIITG
Sbjct: 525 WLDAIRLVYTIYARGKNEVLAGIITG 550

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535272|ref|XP_003536172.1| PREDICTED: uncharacterized protein LOC100809275 isoform 1 [Glycine max]

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/487 (74%), Positives = 406/487 (83%), Gaps = 10/487 (2%)

Query: 19  EPKPEPAADPKVEETKETLIQPPPSTEQTEKQHPSTEQTEKQPPSTEQTLNPA----LRK 74
           EP P+P ++P   E  +  ++P   +E     +   ++ E    S E   NP+    LRK
Sbjct: 49  EPNPQPESEPVPTEQTQAPLEPKSGSEADPVVN-DADRRETTIHSNEANANPSPTPKLRK 107

Query: 75  DEGNRTFTMRELLTELKSEGEDSVTDASQGNTPHQL---AEQNNAAMELINSVTGVDEEG 131
           DEG+RTFTMRELL  LK+  E    DA+   +P Q    A+QNNAAM+LINSV GVD+EG
Sbjct: 108 DEGSRTFTMRELLNGLKTGSEPEKEDANSPYSPEQQQHQADQNNAAMDLINSVVGVDDEG 167

Query: 132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACK 191
           RSRQRILTFAA+RYA AIERNPEDYDALYNWALVLQESADNV  DSTSPSKDALLEEACK
Sbjct: 168 RSRQRILTFAARRYATAIERNPEDYDALYNWALVLQESADNVIPDSTSPSKDALLEEACK 227

Query: 192 KYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA 251
           KYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT NYEKAVQLNWNSPQA
Sbjct: 228 KYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATSNYEKAVQLNWNSPQA 287

Query: 252 LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL 311
           LNNWGLALQELS IVPAREKQ IVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL
Sbjct: 288 LNNWGLALQELSTIVPAREKQKIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL 347

Query: 312 RTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTA 371
           RTGG+V+ +EVSPNELYSQSAIYIAAAHALKP+YSVYSSALRLVRSMLPLP+LK GYLTA
Sbjct: 348 RTGGSVSAQEVSPNELYSQSAIYIAAAHALKPNYSVYSSALRLVRSMLPLPHLKVGYLTA 407

Query: 372 PPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQV-TRSLSGRTGD-FSPDRRAIRIEV 429
           PP G  +APH+DWK S F L+HE LQQ  + E KQV  ++LSGR+ D  S D++ I++++
Sbjct: 408 PPVGASIAPHNDWKGSDFFLDHEKLQQIPRGEHKQVPPQNLSGRSLDAVSGDKKTIKVDI 467

Query: 430 PDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADV 489
            DI SVSACADLTLPPGAGLCI+T +G V+LVADSWE+LDGWLDAIRLVYTIY RGK+DV
Sbjct: 468 ADITSVSACADLTLPPGAGLCIDTSYGSVYLVADSWESLDGWLDAIRLVYTIYVRGKSDV 527

Query: 490 LAGIITG 496
           LAGIITG
Sbjct: 528 LAGIITG 534

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535274|ref|XP_003536173.1| PREDICTED: uncharacterized protein LOC100809275 isoform 2 [Glycine max]

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/496 (73%), Positives = 407/496 (82%), Gaps = 22/496 (4%)

Query: 19  EPKPEPAADPKVEETKETLIQPPPSTEQTEKQHPSTEQTEKQPPSTEQTLNPA----LRK 74
           EP P+P ++P   E  +  ++P   +E     +   ++ E    S E   NP+    LRK
Sbjct: 49  EPNPQPESEPVPTEQTQAPLEPKSGSEADPVVN-DADRRETTIHSNEANANPSPTPKLRK 107

Query: 75  DEGNRTFTMRELLTELKSEGEDSVTDASQGNTPHQL------------AEQNNAAMELIN 122
           DEG+RTFTMRELL  LK+  E    DA   N+P+ +            A+QNNAAM+LIN
Sbjct: 108 DEGSRTFTMRELLNGLKTGSEPEKEDA---NSPYSVSKIFSPEQQQHQADQNNAAMDLIN 164

Query: 123 SVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSK 182
           SV GVD+EGRSRQRILTFAA+RYA AIERNPEDYDALYNWALVLQESADNV  DSTSPSK
Sbjct: 165 SVVGVDDEGRSRQRILTFAARRYATAIERNPEDYDALYNWALVLQESADNVIPDSTSPSK 224

Query: 183 DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV 242
           DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT NYEKAV
Sbjct: 225 DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATSNYEKAV 284

Query: 243 QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV 302
           QLNWNSPQALNNWGLALQELS IVPAREKQ IVRTAISKFRAAIQLQFDFHRAIYNLGTV
Sbjct: 285 QLNWNSPQALNNWGLALQELSTIVPAREKQKIVRTAISKFRAAIQLQFDFHRAIYNLGTV 344

Query: 303 LYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLP 362
           LYGLAEDTLRTGG+V+ +EVSPNELYSQSAIYIAAAHALKP+YSVYSSALRLVRSMLPLP
Sbjct: 345 LYGLAEDTLRTGGSVSAQEVSPNELYSQSAIYIAAAHALKPNYSVYSSALRLVRSMLPLP 404

Query: 363 YLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQV-TRSLSGRTGD-FSP 420
           +LK GYLTAPP G  +APH+DWK S F L+HE LQQ  + E KQV  ++LSGR+ D  S 
Sbjct: 405 HLKVGYLTAPPVGASIAPHNDWKGSDFFLDHEKLQQIPRGEHKQVPPQNLSGRSLDAVSG 464

Query: 421 DRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYT 480
           D++ I++++ DI SVSACADLTLPPGAGLCI+T +G V+LVADSWE+LDGWLDAIRLVYT
Sbjct: 465 DKKTIKVDIADITSVSACADLTLPPGAGLCIDTSYGSVYLVADSWESLDGWLDAIRLVYT 524

Query: 481 IYARGKADVLAGIITG 496
           IY RGK+DVLAGIITG
Sbjct: 525 IYVRGKSDVLAGIITG 540

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075226|ref|XP_002304578.1| predicted protein [Populus trichocarpa] gi|222842010|gb|EEE79557.1| predicted protein [Populus trichocarpa]

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/379 (89%), Positives = 364/379 (96%), Gaps = 1/379 (0%)

Query: 118 MELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS 177
           MELI+SVT  DEEGRSRQR+LTFAA+RYA+A+ERNP+DYDALYNWALVLQESADNVSLDS
Sbjct: 1   MELIDSVTSTDEEGRSRQRVLTFAARRYASALERNPDDYDALYNWALVLQESADNVSLDS 60

Query: 178 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 237
           TSPSKD LLEEACKKYDEATRLCPTL+DAFYNWAIAISDRAKMRGRTKEAEELWKQATKN
Sbjct: 61  TSPSKDDLLEEACKKYDEATRLCPTLNDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 120

Query: 238 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 297
           YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY
Sbjct: 121 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 180

Query: 298 NLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRS 357
           NLGTVLYGLAEDTLRTGGT N ++VSPNELYSQSAIYIAAAHALKP+YSVYSSALRLVRS
Sbjct: 181 NLGTVLYGLAEDTLRTGGTPNAKDVSPNELYSQSAIYIAAAHALKPNYSVYSSALRLVRS 240

Query: 358 MLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGD 417
           MLPLPYLK GYLTAP AG P+APH+DWKRS+FVLNHEGLQQ SK+EQKQV RSLSGR  D
Sbjct: 241 MLPLPYLKVGYLTAPQAGKPIAPHNDWKRSEFVLNHEGLQQISKSEQKQVRRSLSGRPSD 300

Query: 418 FS-PDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIR 476
            S  D++AI++EVPDIVSVSACADLTLPPGAGLCI+TIHGP+FLVADSWE+LDGWLDAIR
Sbjct: 301 VSNSDKKAIKVEVPDIVSVSACADLTLPPGAGLCIDTIHGPLFLVADSWESLDGWLDAIR 360

Query: 477 LVYTIYARGKADVLAGIIT 495
           LVYTIYARGK++VLAGI+T
Sbjct: 361 LVYTIYARGKSEVLAGIVT 379

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576620|ref|XP_003556428.1| PREDICTED: uncharacterized protein LOC100786164 [Glycine max]

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/529 (71%), Positives = 419/529 (79%), Gaps = 42/529 (7%)

Query: 7   EPQFQNGVASTDEPKPE----------PAADPKVEETKETLIQPPPS-----TEQTEKQH 51
           EP+ QNG     EP+PE          P  +PK + T E    P P      TEQT+ Q 
Sbjct: 3   EPESQNGHEQDPEPQPETEPVPTEQTQPQLEPKSKSTPEPEPNPQPESEPVPTEQTQAQL 62

Query: 52  PSTEQTEKQPPSTEQTL----------------NPALRKDEGNRTFTMRELLTELKSEGE 95
                +E  P   +  L                 P LRKDEG+RTFTMRELL  LK++ E
Sbjct: 63  EPKSGSEADPAVNDADLRETTIHSNETYANPSPTPQLRKDEGSRTFTMRELLNGLKNDSE 122

Query: 96  DSVTDASQGNTPHQ------LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAI 149
               D   GN+P+        A+QNNAAM+LINSV GVDEEGRSRQRILTFAA+RYA AI
Sbjct: 123 PERED---GNSPYSPEQQQQQADQNNAAMDLINSVVGVDEEGRSRQRILTFAARRYATAI 179

Query: 150 ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN 209
           ERNPEDYDALYNWALVLQESADNVS DSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN
Sbjct: 180 ERNPEDYDALYNWALVLQESADNVSPDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN 239

Query: 210 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAR 269
           WAIAISDRAKMRGRTKEAEELWK AT+NYEKAVQLNWNSPQALNNWGLALQELS IVPAR
Sbjct: 240 WAIAISDRAKMRGRTKEAEELWKLATRNYEKAVQLNWNSPQALNNWGLALQELSGIVPAR 299

Query: 270 EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYS 329
           EKQ IVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG+V+ +EVSPNELYS
Sbjct: 300 EKQKIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGSVSAQEVSPNELYS 359

Query: 330 QSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQF 389
           QSAIYIAAAHALKP+YSVYSSALRLVRSMLPLP+LK GYLTAPP G  +APH+DWKRS+F
Sbjct: 360 QSAIYIAAAHALKPNYSVYSSALRLVRSMLPLPHLKVGYLTAPPVGASIAPHNDWKRSEF 419

Query: 390 VLNHEGLQQASKNEQKQV-TRSLSGRTGD-FSPDRRAIRIEVPDIVSVSACADLTLPPGA 447
           +L+HE LQQ  + E KQV  ++LSGR  D  S D++ I++++ DI+SVSACADLTLPPGA
Sbjct: 420 LLDHEKLQQIPRGEYKQVPPQNLSGRLVDAVSGDKKTIKVDIADIISVSACADLTLPPGA 479

Query: 448 GLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADVLAGIITG 496
           GLCI+T +G V+LVADSWE+LDGWLDA+RLVYTIY RGK+DVLAGIITG
Sbjct: 480 GLCIDTSYGSVYLVADSWESLDGWLDALRLVYTIYVRGKSDVLAGIITG 528

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|365222856|gb|AEW69780.1| Hop-interacting protein THI002 [Solanum lycopersicum]

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/431 (79%), Positives = 387/431 (89%), Gaps = 7/431 (1%)

Query: 72  LRKDEGNRTFTMRELLTELKS--EGEDSVTDASQGNTPH-----QLAEQNNAAMELINSV 124
           L+KDEG+RTFTMRELL ELK+    EDS  +  + +TPH     Q   ++NAA++LINSV
Sbjct: 138 LKKDEGSRTFTMRELLDELKNGDANEDSEAERRESDTPHSQQSSQQHTESNAALDLINSV 197

Query: 125 TGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDA 184
           TG DEEGRSRQRILT+AA+RYA A+ERN EDYDALYNWALVLQESADNVS DSTSPSKD+
Sbjct: 198 TGADEEGRSRQRILTYAARRYATALERNQEDYDALYNWALVLQESADNVSPDSTSPSKDS 257

Query: 185 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 244
           LLE+ACKKY+EATRLCPTL+DA+YNWAIAISDRAK+RGRTKEAEELWKQATKNYEKAVQL
Sbjct: 258 LLEQACKKYEEATRLCPTLNDAYYNWAIAISDRAKIRGRTKEAEELWKQATKNYEKAVQL 317

Query: 245 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY 304
           NWNSPQALNNWGLALQELSAIVPAREK TIV+TAISKFRAAIQLQFDFHRAIYNLGTVLY
Sbjct: 318 NWNSPQALNNWGLALQELSAIVPAREKLTIVKTAISKFRAAIQLQFDFHRAIYNLGTVLY 377

Query: 305 GLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYL 364
           GLAED  RTGG V  + +SPNELYSQSAIYIAAAHALKP+YSVY+SAL+LVRSMLPLPYL
Sbjct: 378 GLAEDMSRTGGAVTAKGISPNELYSQSAIYIAAAHALKPNYSVYTSALKLVRSMLPLPYL 437

Query: 365 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRA 424
           K GYLT+PPAG P+APHSDWKRSQFVLN EGLQQ SK +Q+ ++ SLS  + D SP R+A
Sbjct: 438 KVGYLTSPPAGNPLAPHSDWKRSQFVLNQEGLQQISKVDQRHMSSSLSSNSADMSPSRQA 497

Query: 425 IRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYAR 484
           I+++VPDI+SVSACADLTLPPGAGL I+TIHGPV+++ADSWE+LD WLDAIRLVYTI AR
Sbjct: 498 IKVDVPDIISVSACADLTLPPGAGLRIDTIHGPVYMIADSWESLDWWLDAIRLVYTIGAR 557

Query: 485 GKADVLAGIIT 495
           GK+DVLAGIIT
Sbjct: 558 GKSDVLAGIIT 568

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742432|emb|CBI34581.3| unnamed protein product [Vitis vinifera]

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/426 (81%), Positives = 375/426 (88%), Gaps = 13/426 (3%)

Query: 83  MRELLTELK-SEGEDSVTDASQGNTPHQLA----------EQNNAAMELINSVTGVDEEG 131
           MRELL+ELK  EG  +  +    +  H  +          + N+ AM+LINSVTGVDEEG
Sbjct: 1   MRELLSELKDGEGNSAAREGETHDASHHYSSESTQQQHHIDHNDPAMDLINSVTGVDEEG 60

Query: 132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACK 191
           RSRQRIL FAA+RYA+AIERN EDYDALYNWALVLQESADNV  DS+SPSKDALLEEACK
Sbjct: 61  RSRQRILAFAARRYASAIERNSEDYDALYNWALVLQESADNVGPDSSSPSKDALLEEACK 120

Query: 192 KYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA 251
           KYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT+NYEKAVQLNWNSPQA
Sbjct: 121 KYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATRNYEKAVQLNWNSPQA 180

Query: 252 LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL 311
           LNNWGLALQELSAIVP REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL
Sbjct: 181 LNNWGLALQELSAIVPVREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL 240

Query: 312 RTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTA 371
           R G  V+ +EVSPNELYSQSAIYIAAAHALKP+YSVY SALRLVRSMLPLPYLK GYL A
Sbjct: 241 RAGAIVD-KEVSPNELYSQSAIYIAAAHALKPNYSVYRSALRLVRSMLPLPYLKVGYLAA 299

Query: 372 PPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGD-FSPDRRAIRIEVP 430
           PPAG PVAPH DWKR+QFVLNHEGLQQ +K EQKQ  ++LSGR+GD    D+ AI+++VP
Sbjct: 300 PPAGNPVAPHGDWKRTQFVLNHEGLQQLNKVEQKQTPQTLSGRSGDAVHIDKAAIKVDVP 359

Query: 431 DIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADVL 490
           DIVSVSACADLTLP GAGLCI+TIHGPVFLVADSWE+LDGW DAIRLVYTI+ARGK+DVL
Sbjct: 360 DIVSVSACADLTLPAGAGLCIDTIHGPVFLVADSWESLDGWFDAIRLVYTIFARGKSDVL 419

Query: 491 AGIITG 496
           AGIITG
Sbjct: 420 AGIITG 425

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528708|ref|XP_004171345.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101213929 [Cucumis sativus]

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/394 (85%), Positives = 363/394 (92%), Gaps = 2/394 (0%)

Query: 105 NTPHQ-LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWA 163
           ++PHQ  +EQ+ AAMELINSVTGVDEEGRSRQRILTFAA+RYA+AIERN +DYDALYNWA
Sbjct: 37  DSPHQPYSEQSRAAMELINSVTGVDEEGRSRQRILTFAARRYASAIERNGQDYDALYNWA 96

Query: 164 LVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGR 223
           LVLQESADNVS DSTSPSKDALLEEACKKYDEAT LCPTLHDAFYNWAIAISDRAKMRGR
Sbjct: 97  LVLQESADNVSPDSTSPSKDALLEEACKKYDEATHLCPTLHDAFYNWAIAISDRAKMRGR 156

Query: 224 TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFR 283
           TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV+TAISKFR
Sbjct: 157 TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVKTAISKFR 216

Query: 284 AAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP 343
           AAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG+ N ++VSPNELYSQSAIYIAAAHALKP
Sbjct: 217 AAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGSGNVKDVSPNELYSQSAIYIAAAHALKP 276

Query: 344 SYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQAS-KN 402
           +YSVYSSALRLVRSMLPLPYLK GYLTAPP G P+APHSDWKRSQF LNH+ LQ+ +   
Sbjct: 277 NYSVYSSALRLVRSMLPLPYLKVGYLTAPPVGRPLAPHSDWKRSQFFLNHDVLQKLNIGG 336

Query: 403 EQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVA 462
           EQ Q + S+ GR+G      R I++E+PDIVSVSACADLTLPPGAGLCI+TIHGP+FLVA
Sbjct: 337 EQIQTSPSILGRSGSTLNGDRTIKVEIPDIVSVSACADLTLPPGAGLCIDTIHGPIFLVA 396

Query: 463 DSWEALDGWLDAIRLVYTIYARGKADVLAGIITG 496
           DSW+ LDGWLDAIRLVYTIYARGK  VLAGIITG
Sbjct: 397 DSWDTLDGWLDAIRLVYTIYARGKNVVLAGIITG 430

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
TAIR|locus:2165725	565	AT5G41950 [Arabidopsis thalian	0.963	0.846	0.689	5.3e-175
UNIPROTKB|Q8EKN7	571	SO_0055 "Tetratricopeptide rep	0.443	0.385	0.266	5.7e-12
TIGR_CMR|SO_0055	571	SO_0055 "conserved domain prot	0.443	0.385	0.266	5.7e-12
DICTYBASE|DDB_G0278895	1313	cldA "Clu domain-containing pr	0.685	0.258	0.238	4.1e-06

TAIR|locus:2165725 AT5G41950 [Arabidopsis thaliana (taxid:3702)]

 Score = 1700 (603.5 bits), Expect = 5.3e-175, P = 5.3e-175
 Identities = 335/486 (68%), Positives = 392/486 (80%)

Query:    19 EPKPEPA-ADPKVEETKETLIQPPPSTEQTEKQHPSTEQTEKQPPSTEQ-TLNPALRKDE 76
             + KPE A ++ K EE +  +    P     +     +E+   +    EQ +    L+KD+
Sbjct:    80 DAKPEEAQSEVKPEEVQSVVTDTKPDLTDVDLSPGGSEEIPIRSTEVEQESTTSVLKKDD 139

Query:    77 -GNRTFTMRELLTELKSEGEDSVTDASQGNTPHQLAEQ---NNAAMELINSVTGVDEEGR 132
              GN+TFTMRELL+ELKSE  D    +S      + A Q   NN AM+LIN +   DEEGR
Sbjct:   140 DGNKTFTMRELLSELKSEEGDGTPHSSASPFSRESASQPAENNPAMDLINRIQVNDEEGR 199

Query:   133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK 192
             SRQR+L FAA++YA+AIERNP+D+DALYNWAL+LQESADNVS DS SPSKD LLEEACKK
Sbjct:   200 SRQRVLAFAARKYASAIERNPDDHDALYNWALILQESADNVSPDSVSPSKDDLLEEACKK 259

Query:   193 YDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL 252
             YDEATRLCPTL+DA+YNWAIAISDRAK+RGRTKEAEELW+QA  NYEKAVQLNWNS QAL
Sbjct:   260 YDEATRLCPTLYDAYYNWAIAISDRAKIRGRTKEAEELWEQAADNYEKAVQLNWNSSQAL 319

Query:   253 NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLR 312
             NNWGL LQELS IVPAREK+ +VRTAISKFRAAI+LQFDFHRAIYNLGTVLYGLAEDTLR
Sbjct:   320 NNWGLVLQELSQIVPAREKEKVVRTAISKFRAAIRLQFDFHRAIYNLGTVLYGLAEDTLR 379

Query:   313 TGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTAP 372
             TGG+ N +++ P ELYSQSAIYIAAAH+LKPSYSVYSSALRLVRSMLPLP+LK GYLTAP
Sbjct:   380 TGGSGNGKDMPPGELYSQSAIYIAAAHSLKPSYSVYSSALRLVRSMLPLPHLKVGYLTAP 439

Query:   373 PAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSP--DRRAIRIEVP 430
             P G  +APHSDWKR++F LNHE L Q  K E +++ R+LSG+    S   +R+ +++ + 
Sbjct:   440 PVGNSLAPHSDWKRTEFELNHERLLQVLKPEPREMGRNLSGKAETMSTNVERKTVKVNIT 499

Query:   431 DIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADVL 490
             +IVSV+ CADLTLPPGAGLCI+TIHGPVFLVADSWE+LDGWLDAIRLVYTIYARGK+DVL
Sbjct:   500 EIVSVTPCADLTLPPGAGLCIDTIHGPVFLVADSWESLDGWLDAIRLVYTIYARGKSDVL 559

Query:   491 AGIITG 496
             AGIITG
Sbjct:   560 AGIITG 565

GO:0005737 "cytoplasm" evidence=ISM

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=IEA

GO:0045040 "protein import into mitochondrial outer membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q8EKN7 SO_0055 "Tetratricopeptide repeat-containing protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 193 (73.0 bits), Expect = 5.7e-12, P = 5.7e-12
 Identities = 65/244 (26%), Positives = 118/244 (48%)

Query:    72 LRKDEGNRTFTMRELLTELKSEGEDSVTDASQGNTPHQLAEQNNAAMELINSVTG---VD 128
             LRK +  R    R     L  +G+ +   A    T  +L E+  A +       G   V+
Sbjct:   302 LRKSQEEREQRARPNFELLLMKGKYNELIALAKGT--ELDEEEKAVVAWAEIALGDLLVE 359

Query:   129 EEGRSRQ-RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLE 187
             +  +++Q ++   + ++Y  A+   P+ ++AL NW   L + A           + AL E
Sbjct:   360 QAKKAQQPKLFEQSFEKYQAALAIKPDMHEALNNWGNALSDLAQ-------LKQEPALFE 412

Query:   188 EACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 247
             ++ +KY  A  + P +HDA +NW   +SD A++    K+   L++Q+ + YE A+ +  +
Sbjct:   413 QSLEKYQAALAIKPDMHDALFNWGNVLSDLAQL----KQEPALFEQSIEKYEAALAIKPD 468

Query:   248 SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 307
               +A++NWG AL +L+ +   ++K  +   + SK    IQ +   ++  YNL   LY L 
Sbjct:   469 DHEAISNWGGALLDLAKL---QQKTELFEESKSKL---IQARSVANQPNYNLAC-LYSLL 521

Query:   308 EDTL 311
              D L
Sbjct:   522 HDDL 525

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_0055 SO_0055 "conserved domain protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 193 (73.0 bits), Expect = 5.7e-12, P = 5.7e-12
 Identities = 65/244 (26%), Positives = 118/244 (48%)

Query:    72 LRKDEGNRTFTMRELLTELKSEGEDSVTDASQGNTPHQLAEQNNAAMELINSVTG---VD 128
             LRK +  R    R     L  +G+ +   A    T  +L E+  A +       G   V+
Sbjct:   302 LRKSQEEREQRARPNFELLLMKGKYNELIALAKGT--ELDEEEKAVVAWAEIALGDLLVE 359

Query:   129 EEGRSRQ-RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLE 187
             +  +++Q ++   + ++Y  A+   P+ ++AL NW   L + A           + AL E
Sbjct:   360 QAKKAQQPKLFEQSFEKYQAALAIKPDMHEALNNWGNALSDLAQ-------LKQEPALFE 412

Query:   188 EACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 247
             ++ +KY  A  + P +HDA +NW   +SD A++    K+   L++Q+ + YE A+ +  +
Sbjct:   413 QSLEKYQAALAIKPDMHDALFNWGNVLSDLAQL----KQEPALFEQSIEKYEAALAIKPD 468

Query:   248 SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 307
               +A++NWG AL +L+ +   ++K  +   + SK    IQ +   ++  YNL   LY L 
Sbjct:   469 DHEAISNWGGALLDLAKL---QQKTELFEESKSKL---IQARSVANQPNYNLAC-LYSLL 521

Query:   308 EDTL 311
              D L
Sbjct:   522 HDDL 525

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0278895 cldA "Clu domain-containing protein A" [Dictyostelium discoideum (taxid:44689)]

 Score = 144 (55.7 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 89/373 (23%), Positives = 151/373 (40%)

Query:    55 EQTEKQP-PSTEQTLNPALRKDEGNRTFTMRELLTELKSEGEDSVTDASQGNTPHQLAEQ 113
             +Q ++QP P  +Q  N +      N T           +   D   D S  N  +     
Sbjct:   931 QQQQQQPQPQPQQPTNTSTTTSTSNNTSNN----INNNNNNPDGSNDGSDDNINNNNNNN 986

Query:   114 NNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNV 173
             NN      N+    +    S   +   AA+++  AI+  P+DY+ L +W ++L   A  +
Sbjct:   987 NNNN----NNNNNNNNLTNSADNLFIQAAEKFKVAIQSKPDDYEILTHWGILLSMRARLI 1042

Query:   174 S----LDSTSPSK-DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAE 228
             S    + +   ++ + L + A +K+  A +L    H A +NWA A+   A +R  T  A 
Sbjct:  1043 SNKTYIKAHGKAEIEKLYQSAIEKFQLAVKLKRNHHYALFNWAEALRGWAAIRPGTDIAH 1102

Query:   229 ELWKQATKNYEKA--VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI 286
             EL K+A    ++A   +  W   Q L   G+A   L +  PA     I+R + S+  + +
Sbjct:  1103 ELEKKAKMKLKEAGVFEKRWFF-QTLETQGVA--SLLSGAPAGG--FIIRNSNSRPGSFV 1157

Query:   287 -QLQFDFHRAIYN--LGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP 343
                  D HR I +  + +  +G   + L       PR VS +   S S+   ++ +  K 
Sbjct:  1158 FSYLSDPHRKILHSIIKSSSHGYHVENLP------PRRVSSSSSSSSSSSSNSSNNIPKS 1211

Query:   344 SYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHE-GLQQASKN 402
               S   +   L+ S L       G   +P      +P      S   LN E    +AS  
Sbjct:  1212 GSS--QNLNELLASSLNSSGSSGGSNISPTNSSTTSPTISRSSSVNNLNQELKFNEASTT 1269

Query:   403 EQKQVTRSLSGRT 415
                + + SLSG++
Sbjct:  1270 VPTRNSTSLSGQS 1282


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.128   0.370    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      496       496   0.00083  119 3  11 23  0.46    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  620 (66 KB)
  Total size of DFA:  291 KB (2150 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  57.26u 0.10s 57.36t   Elapsed:  00:00:04
  Total cpu time:  57.26u 0.10s 57.36t   Elapsed:  00:00:04
  Start:  Tue May 21 07:18:20 2013   End:  Tue May 21 07:18:24 2013

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00000524001 SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (500 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	496
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.001
cd13276	117	cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin	0.001
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.002
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.002

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 18/102 (17%)

Query: 135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYD 194
                 A + Y  A+E +P++ DA YN A    +                  EEA + Y+
Sbjct: 13  LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK--------------YEEALEDYE 58

Query: 195 EATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 236
           +A  L P    A+YN  +A        G+ +EA E +++A +
Sbjct: 59  KALELDPDNAKAYYNLGLAY----YKLGKYEEALEAYEKALE 96

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 10/88 (11%)

Query: 219 KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA 278
              G        + +A + YEKA++L+ ++  A  N   A  +L               A
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKY----------EEA 53

Query: 279 ISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
           +  +  A++L  D  +A YNLG   Y L
Sbjct: 54  LEDYEKALELDPDNAKAYYNLGLAYYKL 81

Length = 100

>gnl|CDD|241430 cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin homolog (PH) 1 (AtPH1) PH domain

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 427 IEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAI 475
           I++ D ++V +  + T    A   + T     +L+ADS +  + W+ AI
Sbjct: 51  IDLSDCLTVKSAEEATNKEFA-FEVSTPERTFYLIADSEKEKEEWISAI 98

AtPH1 is expressed in all plant tissue and is proposed to be the plant homolog of human pleckstrin. Pleckstrin consists of two PH domains separated by a linker region, while AtPH has a single PH domain with a short N-terminal extension. AtPH1 binds PtdIns3P specifically and is thought to be an adaptor molecule since it has no obvious catalytic functions. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 24/92 (26%)

Query: 154 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 213
           ++ +AL N    L +  D               +EA + Y++A  L P   +A+YN A+A
Sbjct: 1   DNAEALKNLGNALFKLGD--------------YDEAIEAYEKALELDPDNAEAYYNLALA 46

Query: 214 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 245
                K+    +EA E       + EKA++L+
Sbjct: 47  ---YLKLGKDYEEALE-------DLEKALELD 68

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 9/74 (12%)

Query: 215 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTI 274
           ++  K  G        + +A + YEKA++L+ ++ +A  N  LA  +L            
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEE------ 56

Query: 275 VRTAISKFRAAIQL 288
              A+     A++L
Sbjct: 57  ---ALEDLEKALEL 67

Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	496
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.92
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.91
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.81
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.8
KOG1126	638	consensus DNA-binding cell division cycle control	99.79
KOG1126	638	consensus DNA-binding cell division cycle control	99.77
PRK11189	296	lipoprotein NlpI; Provisional	99.77
KOG1125	579	consensus TPR repeat-containing protein [General f	99.77
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.75
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.75
PRK12370	553	invasion protein regulator; Provisional	99.75
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.75
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.74
PRK15359	144	type III secretion system chaperone protein SscB;	99.73
PRK12370	553	invasion protein regulator; Provisional	99.72
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.71
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.71
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.71
PLN02789	320	farnesyltranstransferase	99.69
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.67
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.67
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.67
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.66
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.65
PRK15359	144	type III secretion system chaperone protein SscB;	99.64
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.63
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.63
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.62
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.62
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.61
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.6
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.6
PLN02789	320	farnesyltranstransferase	99.6
PRK11189	296	lipoprotein NlpI; Provisional	99.59
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.59
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.57
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.57
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.54
KOG0553	304	consensus TPR repeat-containing protein [General f	99.54
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.53
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.53
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.52
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.52
KOG0553	304	consensus TPR repeat-containing protein [General f	99.51
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.51
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.48
KOG1129	478	consensus TPR repeat-containing protein [General f	99.46
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.45
KOG2076	895	consensus RNA polymerase III transcription factor	99.45
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.44
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.43
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.43
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.42
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.41
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.41
KOG1129	478	consensus TPR repeat-containing protein [General f	99.39
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.39
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.38
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.38
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	99.38
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.37
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.36
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.36
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.36
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.35
KOG1125	579	consensus TPR repeat-containing protein [General f	99.35
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.35
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.34
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.34
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.34
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.33
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.33
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.33
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.32
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.31
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.3
PRK14574	822	hmsH outer membrane protein; Provisional	99.3
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.29
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	99.29
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.27
KOG2003	840	consensus TPR repeat-containing protein [General f	99.26
KOG2003	840	consensus TPR repeat-containing protein [General f	99.26
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.24
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.22
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.21
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.2
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.16
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.16
PRK11906	458	transcriptional regulator; Provisional	99.15
PRK14574	822	hmsH outer membrane protein; Provisional	99.14
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.14
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.13
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.12
KOG2076	895	consensus RNA polymerase III transcription factor	99.11
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.11
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.1
PRK11906	458	transcriptional regulator; Provisional	99.1
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.09
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.08
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.08
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.08
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.07
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.07
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.06
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.06
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.05
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.04
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.03
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.02
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.01
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.0
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.99
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.98
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.97
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.97
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.96
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.96
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.96
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.93
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.93
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.87
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.87
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.86
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.86
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.85
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.85
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.83
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.81
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.8
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.79
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.78
PRK15331	165	chaperone protein SicA; Provisional	98.78
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.78
PRK10803	263	tol-pal system protein YbgF; Provisional	98.77
KOG4234	271	consensus TPR repeat-containing protein [General f	98.77
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.72
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.7
KOG4234	271	consensus TPR repeat-containing protein [General f	98.67
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.67
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.66
PRK10803	263	tol-pal system protein YbgF; Provisional	98.65
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.65
PF12688	120	TPR_5: Tetratrico peptide repeat	98.64
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.62
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.62
KOG4555	175	consensus TPR repeat-containing protein [Function	98.61
PRK15331	165	chaperone protein SicA; Provisional	98.6
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.6
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.58
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.55
PLN03218	1060	maturation of RBCL 1; Provisional	98.55
PF12688	120	TPR_5: Tetratrico peptide repeat	98.55
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.54
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.53
PLN03218	1060	maturation of RBCL 1; Provisional	98.53
PF13371	73	TPR_9: Tetratricopeptide repeat	98.53
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.53
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.52
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.52
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.49
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.49
PF13371	73	TPR_9: Tetratricopeptide repeat	98.49
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.48
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.48
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.48
KOG4555	175	consensus TPR repeat-containing protein [Function	98.47
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.46
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.42
PLN03077	857	Protein ECB2; Provisional	98.41
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.39
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.37
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.37
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.36
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.35
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.33
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.32
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.32
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.31
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.31
PF13512	142	TPR_18: Tetratricopeptide repeat	98.27
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.25
PLN03077	857	Protein ECB2; Provisional	98.22
PRK04841	903	transcriptional regulator MalT; Provisional	98.18
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.17
PRK04841	903	transcriptional regulator MalT; Provisional	98.16
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.13
PF13512	142	TPR_18: Tetratricopeptide repeat	98.13
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.09
cd01238	106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	98.07
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.06
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.06
PF13428	44	TPR_14: Tetratricopeptide repeat	97.98
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.97
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.96
PF13428	44	TPR_14: Tetratricopeptide repeat	97.95
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.95
PF13431	34	TPR_17: Tetratricopeptide repeat	97.93
PF13431	34	TPR_17: Tetratricopeptide repeat	97.92
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.9
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.83
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.82
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.76
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.73
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.73
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	97.73
KOG1586	288	consensus Protein required for fusion of vesicles	97.7
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.69
KOG2471	696	consensus TPR repeat-containing protein [General f	97.68
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	97.67
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.67
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.65
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.64
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.64
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.59
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.56
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.55
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.55
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.54
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.5
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.42
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.37
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.37
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.33
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.29
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.27
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.26
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.25
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.24
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.23
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.21
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.09
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.08
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.08
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.08
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.07
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.04
cd01235	101	PH_SETbf Set binding factor Pleckstrin Homology (P	96.99
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.99
cd01266	108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	96.99
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.93
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.92
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.89
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	96.89
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.89
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.88
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	96.88
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.86
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.86
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.86
KOG2047	835	consensus mRNA splicing factor [RNA processing and	96.82
KOG1550	552	consensus Extracellular protein SEL-1 and related	96.75
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	96.72
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	96.69
KOG1585	308	consensus Protein required for fusion of vesicles	96.68
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.66
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.63
KOG1586	288	consensus Protein required for fusion of vesicles	96.54
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.52
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.48
PRK10941	269	hypothetical protein; Provisional	96.47
KOG1585	308	consensus Protein required for fusion of vesicles	96.44
KOG0529	421	consensus Protein geranylgeranyltransferase type I	96.44
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.4
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.39
KOG1550	552	consensus Extracellular protein SEL-1 and related	96.39
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	96.36
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.3
KOG2047	835	consensus mRNA splicing factor [RNA processing and	96.27
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.25
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	96.24
KOG2471	696	consensus TPR repeat-containing protein [General f	96.23
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.2
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.17
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.16
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.13
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.12
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.08
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.07
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	96.04
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.01
KOG1310	758	consensus WD40 repeat protein [General function pr	95.91
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.88
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	95.88
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.81
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.77
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.75
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.68
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.6
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.6
cd01263	122	PH_anillin Anillin Pleckstrin homology (PH) domain	95.55
PRK10941	269	hypothetical protein; Provisional	95.52
cd01250	94	PH_centaurin Centaurin Pleckstrin homology (PH) do	95.48
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.45
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.39
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	95.39
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.36
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.32
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	95.17
KOG1310	758	consensus WD40 repeat protein [General function pr	95.15
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.11
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.09
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	94.92
KOG0529	421	consensus Protein geranylgeranyltransferase type I	94.9
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.79
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.77
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.69
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.61
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	94.53
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	94.08
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.08
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	94.03
KOG2300	629	consensus Uncharacterized conserved protein [Funct	94.03
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.01
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.96
COG2912	269	Uncharacterized conserved protein [Function unknow	93.94
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	93.76
KOG3364	149	consensus Membrane protein involved in organellar	93.69
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	93.66
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.58
KOG3616	1636	consensus Selective LIM binding factor [Transcript	93.56
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	93.55
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.55
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.39
cd01241	102	PH_Akt Akt pleckstrin homology (PH) domain. Akt pl	93.1
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	92.92
KOG1258	577	consensus mRNA processing protein [RNA processing	92.8
KOG3364	149	consensus Membrane protein involved in organellar	92.8
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	92.54
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.48
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	92.44
cd01239	117	PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin hom	92.33
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	92.09
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.92
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	91.59
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	91.55
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	91.28
COG5191	435	Uncharacterized conserved protein, contains HAT (H	91.22
KOG2422	665	consensus Uncharacterized conserved protein [Funct	90.88
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	90.77
KOG2300	629	consensus Uncharacterized conserved protein [Funct	90.62
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	90.54
KOG4814	872	consensus Uncharacterized conserved protein [Funct	90.45
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	90.44
COG5191	435	Uncharacterized conserved protein, contains HAT (H	90.35
cd01253	104	PH_beta_spectrin Beta-spectrin pleckstrin homology	90.09
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	89.88
KOG2041	1189	consensus WD40 repeat protein [General function pr	89.77
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	89.69
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	89.58
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	89.49
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	89.42
COG3947	361	Response regulator containing CheY-like receiver a	89.31
KOG3616	1636	consensus Selective LIM binding factor [Transcript	89.15
COG2912	269	Uncharacterized conserved protein [Function unknow	89.15
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	89.08
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	89.05
KOG1258	577	consensus mRNA processing protein [RNA processing	88.97
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	88.92
cd01254	121	PH_PLD Phospholipase D (PLD) pleckstrin homology (	88.83
KOG4814	872	consensus Uncharacterized conserved protein [Funct	88.81
PF04212	69	MIT: MIT (microtubule interacting and transport) d	88.69
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	88.64
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	88.3
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	88.12
COG4455	273	ImpE Protein of avirulence locus involved in tempe	88.09
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	87.76
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	87.75
cd01237	106	Unc112 Unc-112 pleckstrin homology (PH) domain. Un	87.35
PF15413	112	PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE	87.34
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	87.14
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	86.91
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	86.32
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	85.36
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	85.29
KOG2422	665	consensus Uncharacterized conserved protein [Funct	85.28
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	85.11
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	85.05
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	85.01
COG4941	415	Predicted RNA polymerase sigma factor containing a	84.84
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	84.77
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	84.72
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	84.17
cd02656	75	MIT MIT: domain contained within Microtubule Inter	83.96
PTZ00267	478	NIMA-related protein kinase; Provisional	83.84
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	83.61
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	83.45
cd01230	117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	83.16
PF13226	277	DUF4034: Domain of unknown function (DUF4034)	83.05
COG3629	280	DnrI DNA-binding transcriptional activator of the	82.81
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	82.62
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	82.54
PF15410	119	PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN	82.32
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	82.24
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	81.36
KOG4014	248	consensus Uncharacterized conserved protein (conta	80.46

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.92  E-value=4.8e-24  Score=215.37  Aligned_cols=183  Identities=25%  Similarity=0.339  Sum_probs=107.7

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  211 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  211 (496)
                      |+.+|+++-||..|+++|++.|+.++++.|+|+.+...|+              ..+|+.+|.+||.++|+++++.+|||
T Consensus       296 YyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~--------------V~ea~~cYnkaL~l~p~hadam~NLg  361 (966)
T KOG4626|consen  296 YYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGS--------------VTEAVDCYNKALRLCPNHADAMNNLG  361 (966)
T ss_pred             EeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccc--------------hHHHHHHHHHHHHhCCccHHHHHHHH
Confidence            3445555555555555555555555555555555555555              55555555555555555555555555


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976          212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  291 (496)
Q Consensus       212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~  291 (496)
                      ++|..    +|.+++|.       ..|.++++..|..+.+++|||.+|.++|++          ++|+.+|+.||+++|.
T Consensus       362 ni~~E----~~~~e~A~-------~ly~~al~v~p~~aaa~nNLa~i~kqqgnl----------~~Ai~~YkealrI~P~  420 (966)
T KOG4626|consen  362 NIYRE----QGKIEEAT-------RLYLKALEVFPEFAAAHNNLASIYKQQGNL----------DDAIMCYKEALRIKPT  420 (966)
T ss_pred             HHHHH----hccchHHH-------HHHHHHHhhChhhhhhhhhHHHHHHhcccH----------HHHHHHHHHHHhcCch
Confidence            55555    55555555       444444444444444444444444444444          7777777777777777


Q ss_pred             CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcH--H-------------HHHHHHHHHHHHHhcCCcHHHHH
Q 010976          292 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN--E-------------LYSQSAIYIAAAHALKPSYSVYS  349 (496)
Q Consensus       292 ~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~--~-------------~~~~A~~~~~~a~~l~p~~~~y~  349 (496)
                      ++.++.|+|.+|..+|+...+......+..++|.  +             ...+|+..|+.+++++|+.+...
T Consensus       421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~  493 (966)
T KOG4626|consen  421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAY  493 (966)
T ss_pred             HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhh
Confidence            7777777777777777655544433333333332  1             14678888888888888888433

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=4.3e-23  Score=208.50  Aligned_cols=218  Identities=19%  Similarity=0.222  Sum_probs=178.3

Q ss_pred             CChhhhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCC
Q 010976          105 NTPHQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS  174 (496)
Q Consensus       105 ~~~~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~  174 (496)
                      +..+...|..+-|++.|++++...          +.++...|+..+|..+|.++|.++|+++++++|||++|.++|.   
T Consensus       293 a~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~---  369 (966)
T KOG4626|consen  293 ACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK---  369 (966)
T ss_pred             EEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc---
Confidence            334456789999999999999877          2334456999999999999999999999999999999999999   


Q ss_pred             CCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010976          175 LDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN  254 (496)
Q Consensus       175 ~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~  254 (496)
                                 +++|...|.++++..|+.+.++.|||.+|.+    +|++++|+       .+|+++|.+.|..++++.|
T Consensus       370 -----------~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq----qgnl~~Ai-------~~YkealrI~P~fAda~~N  427 (966)
T KOG4626|consen  370 -----------IEEATRLYLKALEVFPEFAAAHNNLASIYKQ----QGNLDDAI-------MCYKEALRIKPTFADALSN  427 (966)
T ss_pred             -----------chHHHHHHHHHHhhChhhhhhhhhHHHHHHh----cccHHHHH-------HHHHHHHhcCchHHHHHHh
Confidence                       9999999999999999999999999999999    99999999       8999999999999999999


Q ss_pred             HHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcH--HHHHHHH
Q 010976          255 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN--ELYSQSA  332 (496)
Q Consensus       255 lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~A~  332 (496)
                      +|.+|-.+|+.          ..|+++|.+||.++|.+++++.|||.+|...|+...++........+.|+  +.|...+
T Consensus       428 mGnt~ke~g~v----------~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNll  497 (966)
T KOG4626|consen  428 MGNTYKEMGDV----------SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL  497 (966)
T ss_pred             cchHHHHhhhH----------HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence            99999999999          99999999999999999999999999999999887766544333333332  2344444


Q ss_pred             HHHHHHHhcCCcHHHHHHHHHhhhc
Q 010976          333 IYIAAAHALKPSYSVYSSALRLVRS  357 (496)
Q Consensus       333 ~~~~~a~~l~p~~~~y~~al~~~~~  357 (496)
                      .++.-.-.-..-+..+.+...++++
T Consensus       498 h~lq~vcdw~D~d~~~~kl~sivrd  522 (966)
T KOG4626|consen  498 HCLQIVCDWTDYDKRMKKLVSIVRD  522 (966)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHH
Confidence            4433322222222344444444444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.81  E-value=3.8e-18  Score=186.30  Aligned_cols=168  Identities=15%  Similarity=0.160  Sum_probs=112.4

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  214 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~  214 (496)
                      +|++++|+..|+++++++|+++.+++.+|.+++.+|+              +++|+.+|++++.++|++..+++++|.++
T Consensus       378 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~kal~l~P~~~~~~~~la~~~  443 (615)
T TIGR00990       378 LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE--------------FAQAGKDYQKSIDLDPDFIFSHIQLGVTQ  443 (615)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444              55555555555555555555555555555


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHH------------------------
Q 010976          215 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE------------------------  270 (496)
Q Consensus       215 ~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~------------------------  270 (496)
                      ..    +|++++|+       ..|++++..+|+++.+++++|.++..+|++++|..                        
T Consensus       444 ~~----~g~~~eA~-------~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~  512 (615)
T TIGR00990       444 YK----EGSIASSM-------ATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN  512 (615)
T ss_pred             HH----CCCHHHHH-------HHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence            55    55555555       78888888888888888888888888888877611                        


Q ss_pred             -------hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 010976          271 -------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP  343 (496)
Q Consensus       271 -------~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p  343 (496)
                             ..|++++|+..|+++++++|++..++..+|.++..+|+                   +.+|+.+|++++++.+
T Consensus       513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~-------------------~~eAi~~~e~A~~l~~  573 (615)
T TIGR00990       513 KALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGD-------------------VDEALKLFERAAELAR  573 (615)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC-------------------HHHHHHHHHHHHHHhc
Confidence                   14778888888888888888888888888888888887                   7888888888888877


Q ss_pred             cHH
Q 010976          344 SYS  346 (496)
Q Consensus       344 ~~~  346 (496)
                      ...
T Consensus       574 ~~~  576 (615)
T TIGR00990       574 TEG  576 (615)
T ss_pred             cHH
Confidence            544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.80  E-value=5e-18  Score=185.31  Aligned_cols=180  Identities=17%  Similarity=0.169  Sum_probs=169.0

Q ss_pred             hcHHHHHHHHHHhhccc-------------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 010976          112 EQNNAAMELINSVTGVD-------------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST  178 (496)
Q Consensus       112 ~~~~~A~~~~~~~l~~~-------------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~  178 (496)
                      +.+++|+..+.+++...             +..+..+|++++|+..|++++.++|++..+|..+|.++..+|+       
T Consensus       308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~-------  380 (615)
T TIGR00990       308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGD-------  380 (615)
T ss_pred             hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC-------
Confidence            57889999998888642             2345567999999999999999999999999999999999999       


Q ss_pred             CcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010976          179 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA  258 (496)
Q Consensus       179 ~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  258 (496)
                             +++|+..|+++++++|+++.+++++|.++..    +|++++|+       .+|++++.++|++..+++++|.+
T Consensus       381 -------~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~-------~~~~kal~l~P~~~~~~~~la~~  442 (615)
T TIGR00990       381 -------PDKAEEDFDKALKLNSEDPDIYYHRAQLHFI----KGEFAQAG-------KDYQKSIDLDPDFIFSHIQLGVT  442 (615)
T ss_pred             -------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCccCHHHHHHHHHH
Confidence                   9999999999999999999999999999999    99999999       89999999999999999999999


Q ss_pred             HHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHH
Q 010976          259 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAA  338 (496)
Q Consensus       259 l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a  338 (496)
                      +..+|++          ++|+..|+++++..|+++.+++++|.++..+|+                   +.+|..+|+++
T Consensus       443 ~~~~g~~----------~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~-------------------~~~A~~~~~~A  493 (615)
T TIGR00990       443 QYKEGSI----------ASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK-------------------FDEAIEKFDTA  493 (615)
T ss_pred             HHHCCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC-------------------HHHHHHHHHHH
Confidence            9999999          999999999999999999999999999999998                   89999999999


Q ss_pred             HhcCCcH
Q 010976          339 HALKPSY  345 (496)
Q Consensus       339 ~~l~p~~  345 (496)
                      +.++|..
T Consensus       494 l~l~p~~  500 (615)
T TIGR00990       494 IELEKET  500 (615)
T ss_pred             HhcCCcc
Confidence            9999874

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=2.8e-18  Score=176.35  Aligned_cols=207  Identities=17%  Similarity=0.184  Sum_probs=178.9

Q ss_pred             HHHHHhcCCcccccccCCCChhhhhhcHHHHHHHHHHhhccch----------hhhHhhccHHHHHHHHHHHHHhCCCCH
Q 010976           87 LTELKSEGEDSVTDASQGNTPHQLAEQNNAAMELINSVTGVDE----------EGRSRQRILTFAAKRYANAIERNPEDY  156 (496)
Q Consensus        87 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~----------~~~~~~g~~~~Ai~~~~~al~~~P~~~  156 (496)
                      .++|...........-..+..+...++++.|+..+++++.++.          .......+++.|..+|+.||..+|++.
T Consensus       410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY  489 (638)
T KOG1126|consen  410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY  489 (638)
T ss_pred             HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh
Confidence            3444444444444455667777788999999999999999883          223446789999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010976          157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK  236 (496)
Q Consensus       157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~  236 (496)
                      .|||.+|.+|.++++              ++.|.-+|++|+.+||.+......+|.++..    +|+.++|+       .
T Consensus       490 nAwYGlG~vy~Kqek--------------~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL-------~  544 (638)
T KOG1126|consen  490 NAWYGLGTVYLKQEK--------------LEFAEFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKAL-------Q  544 (638)
T ss_pred             HHHHhhhhheeccch--------------hhHHHHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHH-------H
Confidence            999999999999999              9999999999999999999999999999999    99999998       8


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCC
Q 010976          237 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGT  316 (496)
Q Consensus       237 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~  316 (496)
                      .|++|+.+||.++-..+..|.+++.++++          ++|+..+++.-++-|++..+++.+|.+|..+|+        
T Consensus       545 ~~~~A~~ld~kn~l~~~~~~~il~~~~~~----------~eal~~LEeLk~~vP~es~v~~llgki~k~~~~--------  606 (638)
T KOG1126|consen  545 LYEKAIHLDPKNPLCKYHRASILFSLGRY----------VEALQELEELKELVPQESSVFALLGKIYKRLGN--------  606 (638)
T ss_pred             HHHHHHhcCCCCchhHHHHHHHHHhhcch----------HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc--------
Confidence            99999999999999999999999999999          999999999999999999999999999999998        


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHhcCCcHHH
Q 010976          317 VNPREVSPNELYSQSAIYIAAAHALKPSYSV  347 (496)
Q Consensus       317 ~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~  347 (496)
                                 ...|...|.-|..++|.-..
T Consensus       607 -----------~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  607 -----------TDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             -----------chHHHHhhHHHhcCCCccch
Confidence                       66777888888888886554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=5.7e-18  Score=174.13  Aligned_cols=194  Identities=19%  Similarity=0.200  Sum_probs=161.2

Q ss_pred             CChhhhhhcHHHHHHHHHHhhccc--------------------------------------------hhhhHhhccHHH
Q 010976          105 NTPHQLAEQNNAAMELINSVTGVD--------------------------------------------EEGRSRQRILTF  140 (496)
Q Consensus       105 ~~~~~~~~~~~~A~~~~~~~l~~~--------------------------------------------~~~~~~~g~~~~  140 (496)
                      +.++....+|++|...|..+....                                            +.++..|++++.
T Consensus       360 GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~  439 (638)
T KOG1126|consen  360 GRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDT  439 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHH
Confidence            334446778888888888776654                                            345666788888


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 010976          141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKM  220 (496)
Q Consensus       141 Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~  220 (496)
                      ||++|++|++++|++.-+|..+|.-+....+              |+.|.++|++||..+|.+..|||.+|.+|.+    
T Consensus       440 Aik~f~RAiQldp~faYayTLlGhE~~~~ee--------------~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K----  501 (638)
T KOG1126|consen  440 AIKCFKRAIQLDPRFAYAYTLLGHESIATEE--------------FDKAMKSFRKALGVDPRHYNAWYGLGTVYLK----  501 (638)
T ss_pred             HHHHHHHhhccCCccchhhhhcCChhhhhHH--------------HHhHHHHHHhhhcCCchhhHHHHhhhhheec----
Confidence            8888888888888888888888888888888              8888888888888888888888888888888    


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010976          221 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG  300 (496)
Q Consensus       221 ~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg  300 (496)
                      +++++.|.       -.|++|+++||.+......+|.++.++|+.          ++|+..|++|+.++|.++-..++.|
T Consensus       502 qek~e~Ae-------~~fqkA~~INP~nsvi~~~~g~~~~~~k~~----------d~AL~~~~~A~~ld~kn~l~~~~~~  564 (638)
T KOG1126|consen  502 QEKLEFAE-------FHFQKAVEINPSNSVILCHIGRIQHQLKRK----------DKALQLYEKAIHLDPKNPLCKYHRA  564 (638)
T ss_pred             cchhhHHH-------HHHHhhhcCCccchhHHhhhhHHHHHhhhh----------hHHHHHHHHHHhcCCCCchhHHHHH
Confidence            88888888       788888888888888888888888888888          8888888888888888888888888


Q ss_pred             HHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Q 010976          301 TVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL  352 (496)
Q Consensus       301 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al  352 (496)
                      .+++.+++                   |.+|...+++.-++-|+.......+
T Consensus       565 ~il~~~~~-------------------~~eal~~LEeLk~~vP~es~v~~ll  597 (638)
T KOG1126|consen  565 SILFSLGR-------------------YVEALQELEELKELVPQESSVFALL  597 (638)
T ss_pred             HHHHhhcc-------------------hHHHHHHHHHHHHhCcchHHHHHHH
Confidence            88888888                   7888888888888888887433333

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.77  E-value=4.5e-17  Score=161.52  Aligned_cols=198  Identities=17%  Similarity=0.179  Sum_probs=152.4

Q ss_pred             hhcHHHHHHHHHHhhccc--------------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCC
Q 010976          111 AEQNNAAMELINSVTGVD--------------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLD  176 (496)
Q Consensus       111 ~~~~~~A~~~~~~~l~~~--------------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~  176 (496)
                      ..+.+.++..+.+++...              +..+...|++++|+..|+++++++|+++.+|+++|.++..+|+     
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~-----  113 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGN-----  113 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-----
Confidence            345566666666666321              2235567999999999999999999999999999999999999     


Q ss_pred             CCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010976          177 STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG  256 (496)
Q Consensus       177 ~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  256 (496)
                               +++|+..|+++++++|++..+++++|.++..    .|++++|+       ..|+++++++|+++... .+.
T Consensus       114 ---------~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~-------~~~~~al~~~P~~~~~~-~~~  172 (296)
T PRK11189        114 ---------FDAAYEAFDSVLELDPTYNYAYLNRGIALYY----GGRYELAQ-------DDLLAFYQDDPNDPYRA-LWL  172 (296)
T ss_pred             ---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHH-HHH
Confidence                     9999999999999999999999999999999    99999999       78888899999887421 122


Q ss_pred             HHHHHccCcchHHH---------------------hhhhH------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010976          257 LALQELSAIVPARE---------------------KQTIV------RTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED  309 (496)
Q Consensus       257 ~~l~~~g~~~~A~~---------------------~~~~~------~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~  309 (496)
                      .++...+++++|..                     ..|++      +.+...++.+++++|+...+|+++|.++..+|+ 
T Consensus       173 ~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~-  251 (296)
T PRK11189        173 YLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD-  251 (296)
T ss_pred             HHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC-
Confidence            23344555655411                     12222      222233334446777888899999999999998 


Q ss_pred             HHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCC-cHHHHHHHHH
Q 010976          310 TLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP-SYSVYSSALR  353 (496)
Q Consensus       310 ~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p-~~~~y~~al~  353 (496)
                                        +.+|..+|+++++++| ++..++.++.
T Consensus       252 ------------------~~~A~~~~~~Al~~~~~~~~e~~~~~~  278 (296)
T PRK11189        252 ------------------LDEAAALFKLALANNVYNFVEHRYALL  278 (296)
T ss_pred             ------------------HHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence                              8999999999999997 6666666543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.77  E-value=7.1e-18  Score=170.95  Aligned_cols=167  Identities=23%  Similarity=0.308  Sum_probs=154.5

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010976          131 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  210 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~l  210 (496)
                      .+.+.|++.+|+-+|+.|++.+|.++++|..||.+..+.++              -..||..++++++++|++-.++..|
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~--------------E~~ai~AL~rcl~LdP~NleaLmaL  359 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENEN--------------EQNAISALRRCLELDPTNLEALMAL  359 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccc--------------hHHHHHHHHHHHhcCCccHHHHHHH
Confidence            35667999999999999999999999999999999999999              8999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHH-----------------------------------------------------------
Q 010976          211 AIAISDRAKMRGRTKEAEELW-----------------------------------------------------------  231 (496)
Q Consensus       211 g~~~~~~~~~~g~~~eA~~~~-----------------------------------------------------------  231 (496)
                      |+.|..    .|.-.+|+.++                                                           
T Consensus       360 AVSytN----eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~  435 (579)
T KOG1125|consen  360 AVSYTN----EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSG  435 (579)
T ss_pred             HHHHhh----hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhh
Confidence            999988    66666666543                                                           


Q ss_pred             -----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010976          232 -----------KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG  300 (496)
Q Consensus       232 -----------~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg  300 (496)
                                 ++|++||+.||+.+|++...|+.||-++....+.          .+||..|++|+++.|.+.+++||||
T Consensus       436 LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s----------~EAIsAY~rALqLqP~yVR~RyNlg  505 (579)
T KOG1125|consen  436 LGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRS----------EEAISAYNRALQLQPGYVRVRYNLG  505 (579)
T ss_pred             hHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCccc----------HHHHHHHHHHHhcCCCeeeeehhhh
Confidence                       4589999999999999999999999999999999          9999999999999999999999999


Q ss_pred             HHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976          301 TVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  344 (496)
Q Consensus       301 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~  344 (496)
                      ..|..+|.                   |.+|+.+|-.|+.+.+.
T Consensus       506 IS~mNlG~-------------------ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  506 ISCMNLGA-------------------YKEAVKHLLEALSMQRK  530 (579)
T ss_pred             hhhhhhhh-------------------HHHHHHHHHHHHHhhhc
Confidence            99999998                   99999999998888765

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.75  E-value=9.2e-17  Score=180.40  Aligned_cols=183  Identities=15%  Similarity=0.064  Sum_probs=167.1

Q ss_pred             hhhhcHHHHHHHHHHhhccc---------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 010976          109 QLAEQNNAAMELINSVTGVD---------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS  179 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~l~~~---------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~  179 (496)
                      ...|++++|+..+.+++...         +..+...|++++|+.+|+++++.+|++...+..++..+..+|+        
T Consensus       520 ~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr--------  591 (987)
T PRK09782        520 YQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQ--------  591 (987)
T ss_pred             HHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCC--------
Confidence            46788999999998876642         2334567999999999999999999998888887777777899        


Q ss_pred             cchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010976          180 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL  259 (496)
Q Consensus       180 ~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  259 (496)
                            +++|+..|+++++++|+ ..+++++|.++..    +|++++|+       ..|+++++++|+++.+++++|.++
T Consensus       592 ------~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~----lG~~deA~-------~~l~~AL~l~Pd~~~a~~nLG~aL  653 (987)
T PRK09782        592 ------PELALNDLTRSLNIAPS-ANAYVARATIYRQ----RHNVPAAV-------SDLRAALELEPNNSNYQAALGYAL  653 (987)
T ss_pred             ------HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHH
Confidence                  99999999999999997 9999999999999    99999999       899999999999999999999999


Q ss_pred             HHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHH
Q 010976          260 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAH  339 (496)
Q Consensus       260 ~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~  339 (496)
                      ...|++          ++|+..|++|++++|+++.+++++|.++..+|+                   +..|..+|++++
T Consensus       654 ~~~G~~----------eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd-------------------~~eA~~~l~~Al  704 (987)
T PRK09782        654 WDSGDI----------AQSREMLERAHKGLPDDPALIRQLAYVNQRLDD-------------------MAATQHYARLVI  704 (987)
T ss_pred             HHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHH
Confidence            999999          999999999999999999999999999999999                   889999999999


Q ss_pred             hcCCcHH
Q 010976          340 ALKPSYS  346 (496)
Q Consensus       340 ~l~p~~~  346 (496)
                      +++|+..
T Consensus       705 ~l~P~~a  711 (987)
T PRK09782        705 DDIDNQA  711 (987)
T ss_pred             hcCCCCc
Confidence            9999875

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=7.9e-17  Score=159.15  Aligned_cols=155  Identities=20%  Similarity=0.163  Sum_probs=147.6

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  211 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  211 (496)
                      +...++.++|+.+|++|+++||....+|..+|.-|.++.+              -..||..|++|+++||.+..+||.||
T Consensus       340 YSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN--------------t~AAi~sYRrAvdi~p~DyRAWYGLG  405 (559)
T KOG1155|consen  340 YSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN--------------THAAIESYRRAVDINPRDYRAWYGLG  405 (559)
T ss_pred             HHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc--------------cHHHHHHHHHHHhcCchhHHHHhhhh
Confidence            3446899999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976          212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  291 (496)
Q Consensus       212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~  291 (496)
                      .+|.-    ++-+.=|+       -+|++|+++.|++...|..||.||.++++.          ++|+.+|.+|+...-.
T Consensus       406 QaYei----m~Mh~YaL-------yYfqkA~~~kPnDsRlw~aLG~CY~kl~~~----------~eAiKCykrai~~~dt  464 (559)
T KOG1155|consen  406 QAYEI----MKMHFYAL-------YYFQKALELKPNDSRLWVALGECYEKLNRL----------EEAIKCYKRAILLGDT  464 (559)
T ss_pred             HHHHH----hcchHHHH-------HHHHHHHhcCCCchHHHHHHHHHHHHhccH----------HHHHHHHHHHHhcccc
Confidence            99999    99988888       899999999999999999999999999999          9999999999999998


Q ss_pred             CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHh
Q 010976          292 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHA  340 (496)
Q Consensus       292 ~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~  340 (496)
                      +..+++.||.+|.++++                   +.+|+.+|++.+.
T Consensus       465 e~~~l~~LakLye~l~d-------------------~~eAa~~yek~v~  494 (559)
T KOG1155|consen  465 EGSALVRLAKLYEELKD-------------------LNEAAQYYEKYVE  494 (559)
T ss_pred             chHHHHHHHHHHHHHHh-------------------HHHHHHHHHHHHH
Confidence            99999999999999998                   7888888888776

>PRK12370 invasion protein regulator; Provisional

Probab=99.75  E-value=2.1e-16  Score=170.02  Aligned_cols=185  Identities=13%  Similarity=0.012  Sum_probs=132.8

Q ss_pred             hcHHHHHHHHHHhhccchh----------hhH---------hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Q 010976          112 EQNNAAMELINSVTGVDEE----------GRS---------RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADN  172 (496)
Q Consensus       112 ~~~~~A~~~~~~~l~~~~~----------~~~---------~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~  172 (496)
                      +.++.|+.++.+++..+..          ++.         ..+++++|+..++++++++|+++.++..+|.++...|+ 
T Consensus       275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~-  353 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE-  353 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-
Confidence            4456777777777766521          111         12346777777777777777777777777777777777 


Q ss_pred             CCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 010976          173 VSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL  252 (496)
Q Consensus       173 ~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~  252 (496)
                                   +++|+.+|+++++++|+++.+++++|.++..    .|++++|+       ..|+++++++|.++.++
T Consensus       354 -------------~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~G~~~eAi-------~~~~~Al~l~P~~~~~~  409 (553)
T PRK12370        354 -------------YIVGSLLFKQANLLSPISADIKYYYGWNLFM----AGQLEEAL-------QTINECLKLDPTRAAAG  409 (553)
T ss_pred             -------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHhcCCCChhhH
Confidence                         7777777777777777777777777777777    77777777       67777777777777766


Q ss_pred             HHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHH
Q 010976          253 NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ-FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQS  331 (496)
Q Consensus       253 ~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A  331 (496)
                      +.++.++...|++          ++|+..++++++.. |+++.++.++|.+|..+|+                   +.+|
T Consensus       410 ~~~~~~~~~~g~~----------eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~-------------------~~eA  460 (553)
T PRK12370        410 ITKLWITYYHTGI----------DDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK-------------------HELA  460 (553)
T ss_pred             HHHHHHHHhccCH----------HHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC-------------------HHHH
Confidence            6666666667777          88888888887764 6777778888888888887                   6677


Q ss_pred             HHHHHHHHhcCCcHHHHHH
Q 010976          332 AIYIAAAHALKPSYSVYSS  350 (496)
Q Consensus       332 ~~~~~~a~~l~p~~~~y~~  350 (496)
                      ..++.+.....|....+..
T Consensus       461 ~~~~~~~~~~~~~~~~~~~  479 (553)
T PRK12370        461 RKLTKEISTQEITGLIAVN  479 (553)
T ss_pred             HHHHHHhhhccchhHHHHH
Confidence            7777777666666553333

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.75  E-value=4.7e-16  Score=170.23  Aligned_cols=204  Identities=13%  Similarity=0.054  Sum_probs=150.7

Q ss_pred             ChhhhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCC
Q 010976          106 TPHQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSL  175 (496)
Q Consensus       106 ~~~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~  175 (496)
                      ......|+++.|+..+.+++...          +..+...|++++|+..|+++++++|+++.++..+|.++...|+    
T Consensus        84 ~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~----  159 (656)
T PRK15174         84 ISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDK----  159 (656)
T ss_pred             hhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC----
Confidence            34456899999999999988876          3345667999999999999999999999999999999999999    


Q ss_pred             CCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH------------------------
Q 010976          176 DSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW------------------------  231 (496)
Q Consensus       176 ~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~------------------------  231 (496)
                                +++|+..|++++..+|++..++..++. +..    .|++++|+..+                        
T Consensus       160 ----------~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~----~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~  224 (656)
T PRK15174        160 ----------ELQAISLARTQAQEVPPRGDMIATCLS-FLN----KSRLPEDHDLARALLPFFALERQESAGLAVDTLCA  224 (656)
T ss_pred             ----------hHHHHHHHHHHHHhCCCCHHHHHHHHH-HHH----cCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence                      888888888888888888887766543 555    77777776543                        


Q ss_pred             ----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcch----H------------------------HHhhhhHHHHH
Q 010976          232 ----KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVP----A------------------------REKQTIVRTAI  279 (496)
Q Consensus       232 ----~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~----A------------------------~~~~~~~~~Ai  279 (496)
                          ++|+..|+++++++|+++.+++++|.+|..+|++++    |                        +...|++++|+
T Consensus       225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~  304 (656)
T PRK15174        225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAI  304 (656)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence                236678889999999999999999999999999843    1                        11334445555


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHH
Q 010976          280 SKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV  347 (496)
Q Consensus       280 ~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~  347 (496)
                      ..|+++++++|+++.++.++|.++...|+                   +.+|...|++++..+|++..
T Consensus       305 ~~l~~al~l~P~~~~a~~~La~~l~~~G~-------------------~~eA~~~l~~al~~~P~~~~  353 (656)
T PRK15174        305 PLLQQSLATHPDLPYVRAMYARALRQVGQ-------------------YTAASDEFVQLAREKGVTSK  353 (656)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHHhCccchH
Confidence            55555555555555555555555555444                   66777777777777777653

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.74  E-value=3.8e-16  Score=170.98  Aligned_cols=185  Identities=11%  Similarity=0.021  Sum_probs=166.2

Q ss_pred             hhhhhcHHHHHHHHHHhhccc-----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCC
Q 010976          108 HQLAEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLD  176 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~-----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~  176 (496)
                      +...|++++|+..+.+++...           ...+...|++++|+..|+++++.+|+++.+++++|.+|..+|+     
T Consensus       187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~-----  261 (656)
T PRK15174        187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR-----  261 (656)
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-----
Confidence            345688899999888876653           2345567999999999999999999999999999999999999     


Q ss_pred             CCCcchhhhHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 010976          177 STSPSKDALLEE----ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL  252 (496)
Q Consensus       177 ~~~~~~~~~~~~----A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~  252 (496)
                               +++    |+..|+++++++|++..++.++|.++..    +|++++|+       ..|+++++++|+++.++
T Consensus       262 ---------~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~-------~~l~~al~l~P~~~~a~  321 (656)
T PRK15174        262 ---------SREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR----TGQNEKAI-------PLLQQSLATHPDLPYVR  321 (656)
T ss_pred             ---------chhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHH
Confidence                     885    8999999999999999999999999999    99999999       89999999999999999


Q ss_pred             HHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHH
Q 010976          253 NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSA  332 (496)
Q Consensus       253 ~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~  332 (496)
                      .++|.+|...|++          ++|+..|+++++.+|++...+..+|.++...|+                   +.+|.
T Consensus       322 ~~La~~l~~~G~~----------~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~-------------------~deA~  372 (656)
T PRK15174        322 AMYARALRQVGQY----------TAASDEFVQLAREKGVTSKWNRYAAAALLQAGK-------------------TSEAE  372 (656)
T ss_pred             HHHHHHHHHCCCH----------HHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC-------------------HHHHH
Confidence            9999999999999          999999999999999999888889999999998                   67777


Q ss_pred             HHHHHHHhcCCcHH
Q 010976          333 IYIAAAHALKPSYS  346 (496)
Q Consensus       333 ~~~~~a~~l~p~~~  346 (496)
                      .+|+++++.+|++.
T Consensus       373 ~~l~~al~~~P~~~  386 (656)
T PRK15174        373 SVFEHYIQARASHL  386 (656)
T ss_pred             HHHHHHHHhChhhc
Confidence            77777777777644

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.73  E-value=9.8e-17  Score=141.70  Aligned_cols=129  Identities=15%  Similarity=0.097  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 010976          141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKM  220 (496)
Q Consensus       141 Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~  220 (496)
                      -..+|+++++++|++   ++.+|.++...|+              +++|+.+|++++.++|.+..+|+++|.++..    
T Consensus        12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----   70 (144)
T PRK15359         12 PEDILKQLLSVDPET---VYASGYASWQEGD--------------YSRAVIDFSWLVMAQPWSWRAHIALAGTWMM----   70 (144)
T ss_pred             HHHHHHHHHHcCHHH---HHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----
Confidence            457899999999986   6789999999999              9999999999999999999999999999999    


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010976          221 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG  300 (496)
Q Consensus       221 ~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg  300 (496)
                      +|++++|+       ..|+++++++|+++.+++++|.++..+|++          ++|+..|++++++.|+++..+.++|
T Consensus        71 ~g~~~~A~-------~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~----------~eAi~~~~~Al~~~p~~~~~~~~~~  133 (144)
T PRK15359         71 LKEYTTAI-------NFYGHALMLDASHPEPVYQTGVCLKMMGEP----------GLAREAFQTAIKMSYADASWSEIRQ  133 (144)
T ss_pred             HhhHHHHH-------HHHHHHHhcCCCCcHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChHHHHHHH
Confidence            99999999       899999999999999999999999999999          9999999999999999999999999


Q ss_pred             HHHHHcc
Q 010976          301 TVLYGLA  307 (496)
Q Consensus       301 ~~~~~~g  307 (496)
                      .+...+.
T Consensus       134 ~~~~~l~  140 (144)
T PRK15359        134 NAQIMVD  140 (144)
T ss_pred             HHHHHHH
Confidence            9887655

>PRK12370 invasion protein regulator; Provisional

Probab=99.72  E-value=6.3e-16  Score=166.34  Aligned_cols=169  Identities=12%  Similarity=-0.004  Sum_probs=149.6

Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010976          136 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS  215 (496)
Q Consensus       136 g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~  215 (496)
                      +.+++|+.+|+++++++|+++.+|..+|.+|..++..     ......+++++|+..+++|++++|+++.++..+|.++.
T Consensus       275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~-----g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~  349 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQM-----GIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINT  349 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHc-----CCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            5688999999999999999999999999998876541     01123456899999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHH
Q 010976          216 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA  295 (496)
Q Consensus       216 ~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a  295 (496)
                      .    .|++++|+       ..|+++++++|+++.+++++|.++...|++          ++|+..|+++++++|.++.+
T Consensus       350 ~----~g~~~~A~-------~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~----------~eAi~~~~~Al~l~P~~~~~  408 (553)
T PRK12370        350 I----HSEYIVGS-------LLFKQANLLSPISADIKYYYGWNLFMAGQL----------EEALQTINECLKLDPTRAAA  408 (553)
T ss_pred             H----ccCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhcCCCChhh
Confidence            9    99999999       899999999999999999999999999999          99999999999999999988


Q ss_pred             HHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcC-CcHHHHH
Q 010976          296 IYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK-PSYSVYS  349 (496)
Q Consensus       296 ~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~-p~~~~y~  349 (496)
                      ++.++.+++..|+                   +.+|..++++++... |+.+.+.
T Consensus       409 ~~~~~~~~~~~g~-------------------~eeA~~~~~~~l~~~~p~~~~~~  444 (553)
T PRK12370        409 GITKLWITYYHTG-------------------IDDAIRLGDELRSQHLQDNPILL  444 (553)
T ss_pred             HHHHHHHHHhccC-------------------HHHHHHHHHHHHHhccccCHHHH
Confidence            8888888888888                   788888999888764 6666433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.71  E-value=7.9e-16  Score=172.90  Aligned_cols=184  Identities=13%  Similarity=0.034  Sum_probs=169.2

Q ss_pred             hhhhhcHHHHHHHHHHhhccch----------hhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 010976          108 HQLAEQNNAAMELINSVTGVDE----------EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS  177 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~~----------~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~  177 (496)
                      ....|+.+.|+.++.+++....          ......|++++|+..|+++++++|+ ..++.++|.++.++|+      
T Consensus       552 ll~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~------  624 (987)
T PRK09782        552 AQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHN------  624 (987)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCC------
Confidence            3567899999999998887651          1112339999999999999999996 9999999999999999      


Q ss_pred             CCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976          178 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL  257 (496)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  257 (496)
                              +++|+..|+++++++|+++.+++++|.++..    .|++++|+       ..|+++++++|+++.+++++|.
T Consensus       625 --------~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~----~G~~eeAi-------~~l~~AL~l~P~~~~a~~nLA~  685 (987)
T PRK09782        625 --------VPAAVSDLRAALELEPNNSNYQAALGYALWD----SGDIAQSR-------EMLERAHKGLPDDPALIRQLAY  685 (987)
T ss_pred             --------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHH
Confidence                    9999999999999999999999999999999    99999999       8999999999999999999999


Q ss_pred             HHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHH
Q 010976          258 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAA  337 (496)
Q Consensus       258 ~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~  337 (496)
                      ++..+|++          ++|+.+|+++++++|++..+....|.+.....+                   +..+...|.+
T Consensus       686 al~~lGd~----------~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~-------------------~~~a~~~~~r  736 (987)
T PRK09782        686 VNQRLDDM----------AATQHYARLVIDDIDNQALITPLTPEQNQQRFN-------------------FRRLHEEVGR  736 (987)
T ss_pred             HHHHCCCH----------HHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHH-------------------HHHHHHHHHH
Confidence            99999999          999999999999999999999999999998887                   7888888999


Q ss_pred             HHhcCCcHH
Q 010976          338 AHALKPSYS  346 (496)
Q Consensus       338 a~~l~p~~~  346 (496)
                      +..++|+..
T Consensus       737 ~~~~~~~~~  745 (987)
T PRK09782        737 RWTFSFDSS  745 (987)
T ss_pred             HhhcCccch
Confidence            999888776

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.71  E-value=1e-15  Score=139.50  Aligned_cols=145  Identities=24%  Similarity=0.313  Sum_probs=135.7

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY  208 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~  208 (496)
                      +.++..+|++..|...+++||+.+|++..+|..++.+|...|+              .+.|.+.|++|+.++|++.++++
T Consensus        42 al~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge--------------~~~A~e~YrkAlsl~p~~GdVLN  107 (250)
T COG3063          42 ALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE--------------NDLADESYRKALSLAPNNGDVLN  107 (250)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--------------hhhHHHHHHHHHhcCCCccchhh
Confidence            4457788999999999999999999999999999999999999              99999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHH
Q 010976          209 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN--WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI  286 (496)
Q Consensus       209 ~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al  286 (496)
                      |.|..++.    +|++++|.       ..|++|+..-  |.-+..+-|+|.|-.+.|+.          +.|...|+++|
T Consensus       108 NYG~FLC~----qg~~~eA~-------q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~----------~~A~~~l~raL  166 (250)
T COG3063         108 NYGAFLCA----QGRPEEAM-------QQFERALADPAYGEPSDTLENLGLCALKAGQF----------DQAEEYLKRAL  166 (250)
T ss_pred             hhhHHHHh----CCChHHHH-------HHHHHHHhCCCCCCcchhhhhhHHHHhhcCCc----------hhHHHHHHHHH
Confidence            99999999    99999999       6777777532  44577899999999999999          99999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHcch
Q 010976          287 QLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       287 ~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                      +++|+++.....++..++..|+
T Consensus       167 ~~dp~~~~~~l~~a~~~~~~~~  188 (250)
T COG3063         167 ELDPQFPPALLELARLHYKAGD  188 (250)
T ss_pred             HhCcCCChHHHHHHHHHHhccc
Confidence            9999999999999999999998

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.71  E-value=2.7e-15  Score=141.27  Aligned_cols=165  Identities=22%  Similarity=0.306  Sum_probs=149.8

Q ss_pred             hhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010976          130 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN  209 (496)
Q Consensus       130 ~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~  209 (496)
                      ..+...|++++|+..|+++++.+|++..++..+|.++...|+              +++|++.|+++++++|++..++++
T Consensus        39 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~  104 (234)
T TIGR02521        39 LGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE--------------LEKAEDSFRRALTLNPNNGDVLNN  104 (234)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCCHHHHHH
Confidence            346668999999999999999999999999999999999999              999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHH
Q 010976          210 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL--NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ  287 (496)
Q Consensus       210 lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~  287 (496)
                      +|.++..    .|++++|+       ..|++++..  .+.....+.++|.++...|++          ++|+..|+++++
T Consensus       105 ~~~~~~~----~g~~~~A~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~  163 (234)
T TIGR02521       105 YGTFLCQ----QGKYEQAM-------QQFEQAIEDPLYPQPARSLENAGLCALKAGDF----------DKAEKYLTRALQ  163 (234)
T ss_pred             HHHHHHH----cccHHHHH-------HHHHHHHhccccccchHHHHHHHHHHHHcCCH----------HHHHHHHHHHHH
Confidence            9999999    99999999       566666554  356778899999999999999          999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHH
Q 010976          288 LQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVY  348 (496)
Q Consensus       288 l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y  348 (496)
                      .+|++..++..+|.++...|+                   +..|..++++++.+.|.....
T Consensus       164 ~~~~~~~~~~~la~~~~~~~~-------------------~~~A~~~~~~~~~~~~~~~~~  205 (234)
T TIGR02521       164 IDPQRPESLLELAELYYLRGQ-------------------YKDARAYLERYQQTYNQTAES  205 (234)
T ss_pred             hCcCChHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCCCCHHH
Confidence            999999999999999999998                   889999999999887766533

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PLN02789 farnesyltranstransferase

Probab=99.69  E-value=2.2e-15  Score=149.87  Aligned_cols=184  Identities=15%  Similarity=0.097  Sum_probs=161.4

Q ss_pred             hhhhcHHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CCCCCCCCCcchhhhHH
Q 010976          109 QLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA-DNVSLDSTSPSKDALLE  187 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~-~~~~~~~~~~~~~~~~~  187 (496)
                      ...+++.+++.++..++...       +.+++|+..+.++|+++|++..+|..++.++..++ +              ++
T Consensus        31 ~y~~~~~~a~~~~ra~l~~~-------e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~--------------l~   89 (320)
T PLN02789         31 AYTPEFREAMDYFRAVYASD-------ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDAD--------------LE   89 (320)
T ss_pred             eeCHHHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchh--------------HH
Confidence            45678888888888877544       67889999999999999999999999999999998 5              89


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          188 EACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRT--KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       188 ~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~--~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      +++..++++++.+|++..+|++++.++..    +|+.  ++++       .++.++++++|+|..+|+++|.++..+|++
T Consensus        90 eeL~~~~~~i~~npknyqaW~~R~~~l~~----l~~~~~~~el-------~~~~kal~~dpkNy~AW~~R~w~l~~l~~~  158 (320)
T PLN02789         90 EELDFAEDVAEDNPKNYQIWHHRRWLAEK----LGPDAANKEL-------EFTRKILSLDAKNYHAWSHRQWVLRTLGGW  158 (320)
T ss_pred             HHHHHHHHHHHHCCcchHHhHHHHHHHHH----cCchhhHHHH-------HHHHHHHHhCcccHHHHHHHHHHHHHhhhH
Confidence            99999999999999999999999999988    8863  4444       899999999999999999999999999999


Q ss_pred             chHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcH
Q 010976          266 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  345 (496)
Q Consensus       266 ~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~  345 (496)
                                ++|++++.++|+++|.|..+|+++|.++.++++..            ...........|..+++.++|++
T Consensus       159 ----------~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~------------~~~~~~e~el~y~~~aI~~~P~N  216 (320)
T PLN02789        159 ----------EDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLG------------GLEAMRDSELKYTIDAILANPRN  216 (320)
T ss_pred             ----------HHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccc------------cccccHHHHHHHHHHHHHhCCCC
Confidence                      99999999999999999999999999998774310            00112457888889999999999


Q ss_pred             H
Q 010976          346 S  346 (496)
Q Consensus       346 ~  346 (496)
                      .
T Consensus       217 ~  217 (320)
T PLN02789        217 E  217 (320)
T ss_pred             c
Confidence            8

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.67  E-value=1.6e-14  Score=136.07  Aligned_cols=165  Identities=17%  Similarity=0.147  Sum_probs=149.2

Q ss_pred             hhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 010976          109 QLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST  178 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~  178 (496)
                      ...++++.|+..+.+++...          +..+..+|++++|+..|+++++.+|.+..++.++|.++...|+       
T Consensus        42 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~-------  114 (234)
T TIGR02521        42 LEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK-------  114 (234)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc-------
Confidence            45677888888888777654          3345667999999999999999999999999999999999999       


Q ss_pred             CcchhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010976          179 SPSKDALLEEACKKYDEATRLC--PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG  256 (496)
Q Consensus       179 ~~~~~~~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  256 (496)
                             +++|++.|++++...  +.....++++|.++..    .|++++|+       ..|.+++..+|++..++..+|
T Consensus       115 -------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~-------~~~~~~~~~~~~~~~~~~~la  176 (234)
T TIGR02521       115 -------YEQAMQQFEQAIEDPLYPQPARSLENAGLCALK----AGDFDKAE-------KYLTRALQIDPQRPESLLELA  176 (234)
T ss_pred             -------HHHHHHHHHHHHhccccccchHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCcCChHHHHHHH
Confidence                   999999999999864  5677899999999999    99999999       889999999999999999999


Q ss_pred             HHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          257 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       257 ~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                      .++...|++          ++|+..+++++++.|.++..+..++.++...|+
T Consensus       177 ~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (234)
T TIGR02521       177 ELYYLRGQY----------KDARAYLERYQQTYNQTAESLWLGIRIARALGD  218 (234)
T ss_pred             HHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Confidence            999999999          999999999999999999999999999999887

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.67  E-value=6.4e-15  Score=171.41  Aligned_cols=193  Identities=17%  Similarity=0.138  Sum_probs=152.4

Q ss_pred             hhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHH--------------HHHHHHH
Q 010976          110 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDA--------------LYNWALV  165 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a--------------~~~lg~~  165 (496)
                      ..+++++|+..+.+++...          +..+.++|++++|+.+|+++++++|++...              ...+|.+
T Consensus       281 ~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~  360 (1157)
T PRK11447        281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA  360 (1157)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence            3456666666666665544          233445566666666666666666654321              1233555


Q ss_pred             HHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC
Q 010976          166 LQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN  245 (496)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~  245 (496)
                      +...|+              +++|+..|+++++++|++..+++.+|.++..    +|++++|+       ..|+++++++
T Consensus       361 ~~~~g~--------------~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~----~g~~~eA~-------~~y~~aL~~~  415 (1157)
T PRK11447        361 ALKANN--------------LAQAERLYQQARQVDNTDSYAVLGLGDVAMA----RKDYAAAE-------RYYQQALRMD  415 (1157)
T ss_pred             HHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhC
Confidence            555565              9999999999999999999999999999999    99999999       8999999999


Q ss_pred             CCCHHHHHHHHHHHHHccCcchH---------------------------------HHhhhhHHHHHHHHHHHHHhcCCC
Q 010976          246 WNSPQALNNWGLALQELSAIVPA---------------------------------REKQTIVRTAISKFRAAIQLQFDF  292 (496)
Q Consensus       246 P~~~~a~~~lg~~l~~~g~~~~A---------------------------------~~~~~~~~~Ai~~~~~Al~l~P~~  292 (496)
                      |++..++.+++.+|.. +++++|                                 ....|++++|+..|+++++++|++
T Consensus       416 p~~~~a~~~L~~l~~~-~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~  494 (1157)
T PRK11447        416 PGNTNAVRGLANLYRQ-QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS  494 (1157)
T ss_pred             CCCHHHHHHHHHHHHh-cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999998754 344443                                 124688999999999999999999


Q ss_pred             HHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHH
Q 010976          293 HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV  347 (496)
Q Consensus       293 ~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~  347 (496)
                      +.+++++|.+|...|+                   +.+|...|+++++++|+++.
T Consensus       495 ~~~~~~LA~~~~~~G~-------------------~~~A~~~l~~al~~~P~~~~  530 (1157)
T PRK11447        495 VWLTYRLAQDLRQAGQ-------------------RSQADALMRRLAQQKPNDPE  530 (1157)
T ss_pred             HHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHcCCCCHH
Confidence            9999999999999999                   88999999999999998773

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=1e-14  Score=144.29  Aligned_cols=199  Identities=17%  Similarity=0.174  Sum_probs=175.6

Q ss_pred             CCChhhhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC
Q 010976          104 GNTPHQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNV  173 (496)
Q Consensus       104 ~~~~~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~  173 (496)
                      .+..+...++.++|+.+|++++.++          +..+..+++-..|+..|+.|+.++|.|..+|+.+|..|..++.  
T Consensus       336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~M--  413 (559)
T KOG1155|consen  336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKM--  413 (559)
T ss_pred             ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcc--
Confidence            3445567789999999999999988          4456778899999999999999999999999999999999999  


Q ss_pred             CCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 010976          174 SLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALN  253 (496)
Q Consensus       174 ~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~  253 (496)
                                  ..=|+-+|++|+++.|++...|..||.||..    +++.++|+       ++|.+++.....+..+++
T Consensus       414 ------------h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k----l~~~~eAi-------KCykrai~~~dte~~~l~  470 (559)
T KOG1155|consen  414 ------------HFYALYYFQKALELKPNDSRLWVALGECYEK----LNRLEEAI-------KCYKRAILLGDTEGSALV  470 (559)
T ss_pred             ------------hHHHHHHHHHHHhcCCCchHHHHHHHHHHHH----hccHHHHH-------HHHHHHHhccccchHHHH
Confidence                        9999999999999999999999999999999    99999999       899999999988999999


Q ss_pred             HHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHH
Q 010976          254 NWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ-------LQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNE  326 (496)
Q Consensus       254 ~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~-------l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~  326 (496)
                      .||.+|.++++.          .+|..+|++-++       ++|+-..+..-|+.-+.+.++                  
T Consensus       471 ~LakLye~l~d~----------~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~------------------  522 (559)
T KOG1155|consen  471 RLAKLYEELKDL----------NEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKD------------------  522 (559)
T ss_pred             HHHHHHHHHHhH----------HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcc------------------
Confidence            999999999999          999999999998       566667777779998888888                  


Q ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHhhh
Q 010976          327 LYSQSAIYIAAAHALKPSYSVYSSALRLVR  356 (496)
Q Consensus       327 ~~~~A~~~~~~a~~l~p~~~~y~~al~~~~  356 (496)
                       |++|-.|..+++..++........++-++
T Consensus       523 -~~~As~Ya~~~~~~~~e~eeak~LlReir  551 (559)
T KOG1155|consen  523 -FDEASYYATLVLKGETECEEAKALLREIR  551 (559)
T ss_pred             -hHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence             88888888888888666665554444433

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.66  E-value=1.4e-14  Score=168.49  Aligned_cols=194  Identities=15%  Similarity=0.133  Sum_probs=150.5

Q ss_pred             hhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC------
Q 010976          109 QLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADN------  172 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~------  172 (496)
                      ...+++++|+..+.+++...          +..+..+|++++|+..|+++++++|++..++..++.+|...+..      
T Consensus       362 ~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l  441 (1157)
T PRK11447        362 LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFI  441 (1157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence            35688999999999998876          34566789999999999999999999999999888887532110      


Q ss_pred             --CCC--------------------CCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 010976          173 --VSL--------------------DSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL  230 (496)
Q Consensus       173 --~~~--------------------~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~  230 (496)
                        +..                    ........|++++|++.|+++++++|+++.+++.+|.+|..    +|++++|+  
T Consensus       442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~----~G~~~~A~--  515 (1157)
T PRK11447        442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ----AGQRSQAD--  515 (1157)
T ss_pred             HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH--
Confidence              000                    00011235679999999999999999999999999999999    99999999  


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchH------------------------------------------
Q 010976          231 WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA------------------------------------------  268 (496)
Q Consensus       231 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A------------------------------------------  268 (496)
                           ..|+++++++|+++.+++.+|..+...+++++|                                          
T Consensus       516 -----~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~  590 (1157)
T PRK11447        516 -----ALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA  590 (1157)
T ss_pred             -----HHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence                 677777777777776666655544444433222                                          


Q ss_pred             ----------------------HHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhc
Q 010976          269 ----------------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRT  313 (496)
Q Consensus       269 ----------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~  313 (496)
                                            +.+.|++++|+..|+++++++|+++.++++++.+|...|+...+.
T Consensus       591 eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~  657 (1157)
T PRK11447        591 EAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAAR  657 (1157)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence                                  124577799999999999999999999999999999999855444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=4.3e-15  Score=147.75  Aligned_cols=193  Identities=19%  Similarity=0.176  Sum_probs=159.6

Q ss_pred             hhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 010976          110 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS  179 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~  179 (496)
                      ..|+...|...+..++.++          +..+..+.+-++-...|.+|..+||++++.|+.+|.+++-+++        
T Consensus       338 L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q--------  409 (606)
T KOG0547|consen  338 LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ--------  409 (606)
T ss_pred             hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH--------
Confidence            4566667777777777666          2334556788899999999999999999999999999999999        


Q ss_pred             cchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010976          180 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL  259 (496)
Q Consensus       180 ~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  259 (496)
                            |++|+..|++++.++|++.-+|..++.++++    +++++++.       ..|+.++..-|+.++.++..|.++
T Consensus       410 ------~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr----~~k~~~~m-------~~Fee~kkkFP~~~Evy~~fAeiL  472 (606)
T KOG0547|consen  410 ------YEEAIADFQKAISLDPENAYAYIQLCCALYR----QHKIAESM-------KTFEEAKKKFPNCPEVYNLFAEIL  472 (606)
T ss_pred             ------HHHHHHHHHHHhhcChhhhHHHHHHHHHHHH----HHHHHHHH-------HHHHHHHHhCCCCchHHHHHHHHH
Confidence                  9999999999999999999999999999999    88888888       666666667777777777777777


Q ss_pred             HHccCcchH-------------------------------HHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          260 QELSAIVPA-------------------------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       260 ~~~g~~~~A-------------------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                      ..+++++.|                               .+..+++..|+..+++|+++||....++..||.+...+|+
T Consensus       473 tDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~  552 (606)
T KOG0547|consen  473 TDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK  552 (606)
T ss_pred             hhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh
Confidence            777777665                               1245788999999999999999999999999999999998


Q ss_pred             hHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          309 DTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       309 ~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                                         ..+|+++|+++..+.-...
T Consensus       553 -------------------i~eAielFEksa~lArt~~  571 (606)
T KOG0547|consen  553 -------------------IDEAIELFEKSAQLARTES  571 (606)
T ss_pred             -------------------HHHHHHHHHHHHHHHHhHH
Confidence                               7788888888877654433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.64  E-value=3.4e-15  Score=131.85  Aligned_cols=126  Identities=17%  Similarity=0.079  Sum_probs=117.1

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHH
Q 010976          190 CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAR  269 (496)
Q Consensus       190 ~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~  269 (496)
                      ...|+++++++|++   ++++|.++..    .|++++|+       ..|++++.++|.+..+++++|.++..+|++    
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~----~g~~~~A~-------~~~~~al~~~P~~~~a~~~lg~~~~~~g~~----   74 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQ----EGDYSRAV-------IDFSWLVMAQPWSWRAHIALAGTWMMLKEY----   74 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCcHHHHHHHHHHHHHHhhH----
Confidence            46899999999985   6788999999    99999999       899999999999999999999999999999    


Q ss_pred             HhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHH
Q 010976          270 EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS  349 (496)
Q Consensus       270 ~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~  349 (496)
                            ++|+..|+++++++|+++.+++++|.++..+|+                   +.+|+.+|.++++++|+++.+.
T Consensus        75 ------~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~-------------------~~eAi~~~~~Al~~~p~~~~~~  129 (144)
T PRK15359         75 ------TTAINFYGHALMLDASHPEPVYQTGVCLKMMGE-------------------PGLAREAFQTAIKMSYADASWS  129 (144)
T ss_pred             ------HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCCCChHHH
Confidence                  999999999999999999999999999999999                   8999999999999999999887


Q ss_pred             HHHHhhhcC
Q 010976          350 SALRLVRSM  358 (496)
Q Consensus       350 ~al~~~~~~  358 (496)
                      ......+..
T Consensus       130 ~~~~~~~~~  138 (144)
T PRK15359        130 EIRQNAQIM  138 (144)
T ss_pred             HHHHHHHHH
Confidence            766665543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=2.9e-14  Score=144.38  Aligned_cols=203  Identities=17%  Similarity=0.126  Sum_probs=166.3

Q ss_pred             CChhhhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCC
Q 010976          105 NTPHQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS  174 (496)
Q Consensus       105 ~~~~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~  174 (496)
                      +..+.-.+++.+|..++.++..++          +..+...++.++|+.+|..|-++-|....-..-+|.-|...+.   
T Consensus       319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n---  395 (611)
T KOG1173|consen  319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNN---  395 (611)
T ss_pred             HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhcc---
Confidence            333345577777777777777666          2234445777777777777777777777777777777777777   


Q ss_pred             CCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010976          175 LDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN  254 (496)
Q Consensus       175 ~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~  254 (496)
                                 ++-|.++|.+|+.++|+++-.+..+|.+.+.    .+.|.+|+..|+.++...+..+.-.+.-...++|
T Consensus       396 -----------~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N  460 (611)
T KOG1173|consen  396 -----------LKLAEKFFKQALAIAPSDPLVLHELGVVAYT----YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN  460 (611)
T ss_pred             -----------HHHHHHHHHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence                       9999999999999999999999999999998    8999999977777775555544444445677999


Q ss_pred             HHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHH
Q 010976          255 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIY  334 (496)
Q Consensus       255 lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~  334 (496)
                      ||.++.+++++          ++||..|+++|.+.|.++.++..+|.+|..+|+                   ++.|+++
T Consensus       461 LGH~~Rkl~~~----------~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn-------------------ld~Aid~  511 (611)
T KOG1173|consen  461 LGHAYRKLNKY----------EEAIDYYQKALLLSPKDASTHASIGYIYHLLGN-------------------LDKAIDH  511 (611)
T ss_pred             HHHHHHHHhhH----------HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC-------------------hHHHHHH
Confidence            99999999999          999999999999999999999999999999999                   8999999


Q ss_pred             HHHHHhcCCcHHHHHHHHHh
Q 010976          335 IAAAHALKPSYSVYSSALRL  354 (496)
Q Consensus       335 ~~~a~~l~p~~~~y~~al~~  354 (496)
                      |.+++.++|++......|..
T Consensus       512 fhKaL~l~p~n~~~~~lL~~  531 (611)
T KOG1173|consen  512 FHKALALKPDNIFISELLKL  531 (611)
T ss_pred             HHHHHhcCCccHHHHHHHHH
Confidence            99999999999866665553

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.63  E-value=7.1e-14  Score=143.91  Aligned_cols=126  Identities=14%  Similarity=0.044  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccC
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS-PQALNNWGLALQELSA  264 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~l~~~g~  264 (496)
                      +++|++.|+++++.+|++..+++.+|.++..    .|++++|+       ..|+++++.+|.+ ..++..++.+|...|+
T Consensus       196 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~-------~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~  264 (389)
T PRK11788        196 LDAARALLKKALAADPQCVRASILLGDLALA----QGDYAAAI-------EALERVEEQDPEYLSEVLPKLMECYQALGD  264 (389)
T ss_pred             HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence            5555555555555555555555555555555    55555555       4444444444443 2344455555555555


Q ss_pred             cchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976          265 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  344 (496)
Q Consensus       265 ~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~  344 (496)
                      +          ++|+..++++++.+|+.... ..++.++...|+                   +..|...++++++..|+
T Consensus       265 ~----------~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~-------------------~~~A~~~l~~~l~~~P~  314 (389)
T PRK11788        265 E----------AEGLEFLRRALEEYPGADLL-LALAQLLEEQEG-------------------PEAAQALLREQLRRHPS  314 (389)
T ss_pred             H----------HHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCC-------------------HHHHHHHHHHHHHhCcC
Confidence            5          66666666666666655333 556666666665                   67788888888888888


Q ss_pred             HHHHHHHH
Q 010976          345 YSVYSSAL  352 (496)
Q Consensus       345 ~~~y~~al  352 (496)
                      +..+...+
T Consensus       315 ~~~~~~l~  322 (389)
T PRK11788        315 LRGFHRLL  322 (389)
T ss_pred             HHHHHHHH
Confidence            77555433

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.62  E-value=3.5e-14  Score=160.23  Aligned_cols=178  Identities=17%  Similarity=0.126  Sum_probs=151.3

Q ss_pred             hhhhhhcHHHHHHHHHHhhccc---------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 010976          107 PHQLAEQNNAAMELINSVTGVD---------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS  177 (496)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~l~~~---------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~  177 (496)
                      .+...|++++|+..+.+++...         +..+...|++++|+..++++++.+|++..+++.+|.+|..+|+      
T Consensus       712 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~------  785 (899)
T TIGR02917       712 LYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKD------  785 (899)
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC------
Confidence            3445678888888888777654         3345567888888888888888888888888888888888888      


Q ss_pred             CCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976          178 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL  257 (496)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  257 (496)
                              +++|+..|+++++.+|+++.++.++|.++..    .|+ .+|+       ..|++++.+.|+++..+.++|.
T Consensus       786 --------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~-~~A~-------~~~~~~~~~~~~~~~~~~~~~~  845 (899)
T TIGR02917       786 --------YDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE----LKD-PRAL-------EYAEKALKLAPNIPAILDTLGW  845 (899)
T ss_pred             --------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCc-HHHH-------HHHHHHHhhCCCCcHHHHHHHH
Confidence                    8888888888888888888888888888888    888 7777       7888888889999999999999


Q ss_pred             HHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHH
Q 010976          258 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAA  337 (496)
Q Consensus       258 ~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~  337 (496)
                      ++...|++          ++|+..|+++++++|.++.++++++.+++..|+                   +.+|..++++
T Consensus       846 ~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~-------------------~~~A~~~~~~  896 (899)
T TIGR02917       846 LLVEKGEA----------DRALPLLRKAVNIAPEAAAIRYHLALALLATGR-------------------KAEARKELDK  896 (899)
T ss_pred             HHHHcCCH----------HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC-------------------HHHHHHHHHH
Confidence            99999998          999999999999999999999999999999998                   7788888877


Q ss_pred             HH
Q 010976          338 AH  339 (496)
Q Consensus       338 a~  339 (496)
                      ++
T Consensus       897 ~~  898 (899)
T TIGR02917       897 LL  898 (899)
T ss_pred             Hh
Confidence            65

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.62  E-value=6e-14  Score=144.45  Aligned_cols=190  Identities=12%  Similarity=0.094  Sum_probs=162.3

Q ss_pred             CChhhhhhcHHHHHHHHHHhhccc--------------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 010976          105 NTPHQLAEQNNAAMELINSVTGVD--------------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA  170 (496)
Q Consensus       105 ~~~~~~~~~~~~A~~~~~~~l~~~--------------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~  170 (496)
                      ...+...|+++.|+..+..++...              +..+...|++++|+..|+++++.+|.+..++..++.++...|
T Consensus        76 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g  155 (389)
T PRK11788         76 GNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEK  155 (389)
T ss_pred             HHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhc
Confidence            334456788888888888776532              334566799999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC
Q 010976          171 DNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH-----DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN  245 (496)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~-----~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~  245 (496)
                      +              +++|++.|+++++.+|.+.     ..+.++|.++..    .|++++|+       ..|+++++.+
T Consensus       156 ~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~-------~~~~~al~~~  210 (389)
T PRK11788        156 D--------------WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA----RGDLDAAR-------ALLKKALAAD  210 (389)
T ss_pred             h--------------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh----CCCHHHHH-------HHHHHHHhHC
Confidence            9              9999999999999888753     356788888888    99999999       7888888899


Q ss_pred             CCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcchhHHhccCCCCCCCCCc
Q 010976          246 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF-HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSP  324 (496)
Q Consensus       246 P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~-~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~  324 (496)
                      |++..+++.+|.++...|++          ++|+..|++++..+|.+ ..++..++.+|...|+                
T Consensus       211 p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~----------------  264 (389)
T PRK11788        211 PQCVRASILLGDLALAQGDY----------AAAIEALERVEEQDPEYLSEVLPKLMECYQALGD----------------  264 (389)
T ss_pred             cCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC----------------
Confidence            99999999999999999999          99999999999999887 4678889999999998                


Q ss_pred             HHHHHHHHHHHHHHHhcCCcHHHH
Q 010976          325 NELYSQSAIYIAAAHALKPSYSVY  348 (496)
Q Consensus       325 ~~~~~~A~~~~~~a~~l~p~~~~y  348 (496)
                         +.+|..+++++++..|+...+
T Consensus       265 ---~~~A~~~l~~~~~~~p~~~~~  285 (389)
T PRK11788        265 ---EAEGLEFLRRALEEYPGADLL  285 (389)
T ss_pred             ---HHHHHHHHHHHHHhCCCchHH
Confidence               788888899999888886644

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.61  E-value=2.9e-14  Score=132.71  Aligned_cols=125  Identities=17%  Similarity=0.136  Sum_probs=117.4

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  214 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~  214 (496)
                      .++.++++..++++++.+|++.++|..+|.+|...|+              +++|+.+|+++++++|++..++.++|.++
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~--------------~~~A~~a~~~Al~l~P~~~~~~~~lA~aL  117 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRND--------------YDNALLAYRQALQLRGENAELYAALATVL  117 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            5778999999999999999999999999999999999              99999999999999999999999999985


Q ss_pred             -HHHHHHcCC--HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976          215 -SDRAKMRGR--TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  291 (496)
Q Consensus       215 -~~~~~~~g~--~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~  291 (496)
                       ..    .|+  +++|.       ..++++++++|+++.+++++|.++.+.|++          ++|+.+|+++++++|.
T Consensus       118 ~~~----~g~~~~~~A~-------~~l~~al~~dP~~~~al~~LA~~~~~~g~~----------~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        118 YYQ----AGQHMTPQTR-------EMIDKALALDANEVTALMLLASDAFMQADY----------AQAIELWQKVLDLNSP  176 (198)
T ss_pred             HHh----cCCCCcHHHH-------HHHHHHHHhCCCChhHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCC
Confidence             56    777  48888       899999999999999999999999999999          9999999999999887


Q ss_pred             CHH
Q 010976          292 FHR  294 (496)
Q Consensus       292 ~~~  294 (496)
                      +..
T Consensus       177 ~~~  179 (198)
T PRK10370        177 RVN  179 (198)
T ss_pred             Ccc
Confidence            653

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.60  E-value=1.4e-13  Score=155.32  Aligned_cols=191  Identities=19%  Similarity=0.188  Sum_probs=128.4

Q ss_pred             hhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 010976          109 QLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST  178 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~  178 (496)
                      ...++++.|+..+.+.+...          +..+...|++++|+.+|+++++.+|++..+++++|.++...|+       
T Consensus       442 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-------  514 (899)
T TIGR02917       442 LRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN-------  514 (899)
T ss_pred             HhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCC-------
Confidence            34556666666665554432          2334455666667777776666666666666666666666666       


Q ss_pred             CcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH--------------------------
Q 010976          179 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK--------------------------  232 (496)
Q Consensus       179 ~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~--------------------------  232 (496)
                             +++|++.|++++..+|++..++..++.++..    .|++++|+..|+                          
T Consensus       515 -------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  583 (899)
T TIGR02917       515 -------PDDAIQRFEKVLTIDPKNLRAILALAGLYLR----TGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQL  583 (899)
T ss_pred             -------HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCH
Confidence                   6666666666666666666666666666666    666666663322                          


Q ss_pred             -HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHH
Q 010976          233 -QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL  311 (496)
Q Consensus       233 -~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~  311 (496)
                       +|+..+++++..+|.++.+++.+|.++...|++          ++|+..|+++++.+|+++.+++.+|.++...|+   
T Consensus       584 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---  650 (899)
T TIGR02917       584 KKALAILNEAADAAPDSPEAWLMLGRAQLAAGDL----------NKAVSSFKKLLALQPDSALALLLLADAYAVMKN---  650 (899)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC---
Confidence             123566666666666666666667666666666          888888888888888888888888888888887   


Q ss_pred             hccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          312 RTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       312 a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                                      +..|..+|++++..+|++.
T Consensus       651 ----------------~~~A~~~~~~~~~~~~~~~  669 (899)
T TIGR02917       651 ----------------YAKAITSLKRALELKPDNT  669 (899)
T ss_pred             ----------------HHHHHHHHHHHHhcCCCCH
Confidence                            6777778888888777755

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.60  E-value=2.3e-14  Score=130.85  Aligned_cols=137  Identities=24%  Similarity=0.270  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010976          156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT  235 (496)
Q Consensus       156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~  235 (496)
                      ..+...||.-|++.|+              +..|.+-+++||+.+|++..+|..++.+|..    +|+.+.|.       
T Consensus        35 a~arlqLal~YL~~gd--------------~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~----~Ge~~~A~-------   89 (250)
T COG3063          35 AKARLQLALGYLQQGD--------------YAQAKKNLEKALEHDPSYYLAHLVRAHYYQK----LGENDLAD-------   89 (250)
T ss_pred             HHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChhhHH-------
Confidence            3577889999999999              9999999999999999999999999999999    99999999       


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcchhHHhc
Q 010976          236 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL--QFDFHRAIYNLGTVLYGLAEDTLRT  313 (496)
Q Consensus       236 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~a~  313 (496)
                      +.|++|+.++|++..++||.|..++.+|++          ++|...|++|+..  -+.....+-|+|.|-.+.|+     
T Consensus        90 e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~----------~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq-----  154 (250)
T COG3063          90 ESYRKALSLAPNNGDVLNNYGAFLCAQGRP----------EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ-----  154 (250)
T ss_pred             HHHHHHHhcCCCccchhhhhhHHHHhCCCh----------HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC-----
Confidence            899999999999999999999999999999          9999999999985  34567899999999999998     


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          314 GGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       314 ~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                                    +..|..+|+++++++|+++
T Consensus       155 --------------~~~A~~~l~raL~~dp~~~  173 (250)
T COG3063         155 --------------FDQAEEYLKRALELDPQFP  173 (250)
T ss_pred             --------------chhHHHHHHHHHHhCcCCC
Confidence                          7899999999999999988

>PLN02789 farnesyltranstransferase

Probab=99.60  E-value=1e-13  Score=137.91  Aligned_cols=195  Identities=10%  Similarity=0.016  Sum_probs=153.8

Q ss_pred             hhcHHHHHHHHHHhhccch----------hhhHhhc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 010976          111 AEQNNAAMELINSVTGVDE----------EGRSRQR-ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS  179 (496)
Q Consensus       111 ~~~~~~A~~~~~~~l~~~~----------~~~~~~g-~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~  179 (496)
                      .+..+.|+.++.+++...+          ..+..+| ++++++..+.++++.+|++..+|+.++.++..+++        
T Consensus        50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~--------  121 (320)
T PLN02789         50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP--------  121 (320)
T ss_pred             CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc--------
Confidence            3456677788888777662          2233445 68999999999999999999999999999998886        


Q ss_pred             cchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010976          180 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL  259 (496)
Q Consensus       180 ~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  259 (496)
                          ..+++++.+++++++++|++..+|+++|.++..    .|++++++       ++|.++|+.||.|..+|+++|.++
T Consensus       122 ----~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~----l~~~~eeL-------~~~~~~I~~d~~N~sAW~~R~~vl  186 (320)
T PLN02789        122 ----DAANKELEFTRKILSLDAKNYHAWSHRQWVLRT----LGGWEDEL-------EYCHQLLEEDVRNNSAWNQRYFVI  186 (320)
T ss_pred             ----hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hhhHHHHH-------HHHHHHHHHCCCchhHHHHHHHHH
Confidence                113788999999999999999999999999999    88888877       899999999999999999999999


Q ss_pred             HHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHH
Q 010976          260 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAH  339 (496)
Q Consensus       260 ~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~  339 (496)
                      ..+++.   ......+++++.+..++|.++|+|..+|+.++.++...++..      .         .+.++...+.+++
T Consensus       187 ~~~~~l---~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l------~---------~~~~~~~~~~~~~  248 (320)
T PLN02789        187 TRSPLL---GGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEAL------V---------SDPEVSSVCLEVL  248 (320)
T ss_pred             Hhcccc---ccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccc------c---------cchhHHHHHHHhh
Confidence            887432   000112357888899999999999999999999998744210      0         0234555566666


Q ss_pred             hcCCcHH
Q 010976          340 ALKPSYS  346 (496)
Q Consensus       340 ~l~p~~~  346 (496)
                      ..+|...
T Consensus       249 ~~~~~s~  255 (320)
T PLN02789        249 SKDSNHV  255 (320)
T ss_pred             cccCCcH
Confidence            6666655

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.59  E-value=1.3e-13  Score=136.89  Aligned_cols=124  Identities=17%  Similarity=0.131  Sum_probs=116.5

Q ss_pred             ccHHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976          136 RILTFAAKRYANAIERNP---E-DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  211 (496)
Q Consensus       136 g~~~~Ai~~~~~al~~~P---~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  211 (496)
                      +..+.++..+.++|...|   . .+..|+++|.+|...|+              +++|+..|+++++++|+++.+|+++|
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~--------------~~~A~~~~~~Al~l~P~~~~a~~~lg  105 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGL--------------RALARNDFSQALALRPDMADAYNYLG  105 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            567889999999997444   3 37889999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976          212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  291 (496)
Q Consensus       212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~  291 (496)
                      .++..    .|++++|+       ..|+++++++|++..+++++|.++...|++          ++|+..|+++++++|+
T Consensus       106 ~~~~~----~g~~~~A~-------~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~----------~eA~~~~~~al~~~P~  164 (296)
T PRK11189        106 IYLTQ----AGNFDAAY-------EAFDSVLELDPTYNYAYLNRGIALYYGGRY----------ELAQDDLLAFYQDDPN  164 (296)
T ss_pred             HHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCC
Confidence            99999    99999999       899999999999999999999999999999          9999999999999999


Q ss_pred             CHH
Q 010976          292 FHR  294 (496)
Q Consensus       292 ~~~  294 (496)
                      ++.
T Consensus       165 ~~~  167 (296)
T PRK11189        165 DPY  167 (296)
T ss_pred             CHH
Confidence            984

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=3.8e-14  Score=141.10  Aligned_cols=159  Identities=17%  Similarity=0.158  Sum_probs=153.0

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  211 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  211 (496)
                      ++-.|++-.|...|+++|+++|.+...|..+|.+|....+              -++-.+.|.+|..+||+++++|+.+|
T Consensus       336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~--------------~~~~~~~F~~A~~ldp~n~dvYyHRg  401 (606)
T KOG0547|consen  336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQ--------------SEKMWKDFNKAEDLDPENPDVYYHRG  401 (606)
T ss_pred             hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhc--------------cHHHHHHHHHHHhcCCCCCchhHhHH
Confidence            4556999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976          212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  291 (496)
Q Consensus       212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~  291 (496)
                      .+++-    ++++++|+       ..|++++.++|.+..++..++.++++++++          ++++..|+.+++.-|+
T Consensus       402 Qm~fl----L~q~e~A~-------aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~----------~~~m~~Fee~kkkFP~  460 (606)
T KOG0547|consen  402 QMRFL----LQQYEEAI-------ADFQKAISLDPENAYAYIQLCCALYRQHKI----------AESMKTFEEAKKKFPN  460 (606)
T ss_pred             HHHHH----HHHHHHHH-------HHHHHHhhcChhhhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhCCC
Confidence            99999    88888888       899999999999999999999999999999          9999999999999999


Q ss_pred             CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976          292 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  344 (496)
Q Consensus       292 ~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~  344 (496)
                      .++++...|.++..+++                   |..|..+|.+|+.|.|.
T Consensus       461 ~~Evy~~fAeiLtDqqq-------------------Fd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  461 CPEVYNLFAEILTDQQQ-------------------FDKAVKQYDKAIELEPR  494 (606)
T ss_pred             CchHHHHHHHHHhhHHh-------------------HHHHHHHHHHHHhhccc
Confidence            99999999999999998                   99999999999999998

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.57  E-value=2.3e-13  Score=130.35  Aligned_cols=164  Identities=20%  Similarity=0.123  Sum_probs=133.7

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHH---
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDY---DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD---  205 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~---~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~---  205 (496)
                      +...|++++|+..|++++..+|+++   .+++.+|.++...|+              +++|+..|+++++.+|++..   
T Consensus        43 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~--------------~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        43 ALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGD--------------YAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHHCcCCCchHH
Confidence            5567999999999999999999876   688999999999999              99999999999999998776   


Q ss_pred             HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHccCcch
Q 010976          206 AFYNWAIAISDRAKMR-GRTKEAEELWKQATKNYEKAVQLNWNSPQAL-----------------NNWGLALQELSAIVP  267 (496)
Q Consensus       206 a~~~lg~~~~~~~~~~-g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~-----------------~~lg~~l~~~g~~~~  267 (496)
                      +++.+|.++..    . +....-.+.+++|+..|++++..+|++..++                 ..+|.++...|++  
T Consensus       109 a~~~~g~~~~~----~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~--  182 (235)
T TIGR03302       109 AYYLRGLSNYN----QIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAY--  182 (235)
T ss_pred             HHHHHHHHHHH----hcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh--
Confidence            79999999987    5 1111111334444489999999999986543                 3567777777887  


Q ss_pred             HHHhhhhHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 010976          268 AREKQTIVRTAISKFRAAIQLQFD---FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK  342 (496)
Q Consensus       268 A~~~~~~~~~Ai~~~~~Al~l~P~---~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~  342 (496)
                              .+|+..|++++...|+   .+.+++++|.++..+|+                   +.+|..+++....-.
T Consensus       183 --------~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~-------------------~~~A~~~~~~l~~~~  233 (235)
T TIGR03302       183 --------VAAINRFETVVENYPDTPATEEALARLVEAYLKLGL-------------------KDLAQDAAAVLGANY  233 (235)
T ss_pred             --------HHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHhhC
Confidence                    9999999999999765   46899999999999999                   788888776655433

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.57  E-value=1.3e-13  Score=128.24  Aligned_cols=121  Identities=15%  Similarity=0.099  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHccC
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL-QELSA  264 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l-~~~g~  264 (496)
                      .++++..++++++.+|++..+|+.+|.+|..    .|++++|+       .+|+++++++|+++.++.++|.++ ...|+
T Consensus        55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~----~g~~~~A~-------~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~  123 (198)
T PRK10370         55 PEAQLQALQDKIRANPQNSEQWALLGEYYLW----RNDYDNAL-------LAYRQALQLRGENAELYAALATVLYYQAGQ  123 (198)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Confidence            8999999999999999999999999999999    99999999       899999999999999999999975 67777


Q ss_pred             --cchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 010976          265 --IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK  342 (496)
Q Consensus       265 --~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~  342 (496)
                        +          ++|+..++++++++|++..+++++|.+++.+|+                   |.+|+.+|+++++++
T Consensus       124 ~~~----------~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~-------------------~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        124 HMT----------PQTREMIDKALALDANEVTALMLLASDAFMQAD-------------------YAQAIELWQKVLDLN  174 (198)
T ss_pred             CCc----------HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHhhC
Confidence              6          999999999999999999999999999999999                   999999999999999


Q ss_pred             CcHH
Q 010976          343 PSYS  346 (496)
Q Consensus       343 p~~~  346 (496)
                      |.+.
T Consensus       175 ~~~~  178 (198)
T PRK10370        175 SPRV  178 (198)
T ss_pred             CCCc
Confidence            8876

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.54  E-value=5.7e-13  Score=144.75  Aligned_cols=151  Identities=11%  Similarity=0.022  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 010976          140 FAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAK  219 (496)
Q Consensus       140 ~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~  219 (496)
                      +++.......+..|++++++.+||.+....|+              +++|...++++++++|++..++.+++.++.+   
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~--------------~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~---  132 (694)
T PRK15179         70 AALPELLDYVRRYPHTELFQVLVARALEAAHR--------------SDEGLAVWRGIHQRFPDSSEAFILMLRGVKR---  132 (694)
T ss_pred             hhHHHHHHHHHhccccHHHHHHHHHHHHHcCC--------------cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH---
Confidence            34444444556679999999999999999999              9999999999999999999999999999999   


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHH
Q 010976          220 MRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL  299 (496)
Q Consensus       220 ~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~l  299 (496)
                       ++++++|+       ..+++++..+|+++.+++.+|.++.++|++          ++|+..|+++++.+|+++.++.++
T Consensus       133 -~~~~eeA~-------~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~----------~~A~~~y~~~~~~~p~~~~~~~~~  194 (694)
T PRK15179        133 -QQGIEAGR-------AEIELYFSGGSSSAREILLEAKSWDEIGQS----------EQADACFERLSRQHPEFENGYVGW  194 (694)
T ss_pred             -hccHHHHH-------HHHHHHhhcCCCCHHHHHHHHHHHHHhcch----------HHHHHHHHHHHhcCCCcHHHHHHH
Confidence             99999999       899999999999999999999999999999          999999999999999999999999


Q ss_pred             HHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976          300 GTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  344 (496)
Q Consensus       300 g~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~  344 (496)
                      |.++...|+                   ..+|...|+++++...+
T Consensus       195 a~~l~~~G~-------------------~~~A~~~~~~a~~~~~~  220 (694)
T PRK15179        195 AQSLTRRGA-------------------LWRARDVLQAGLDAIGD  220 (694)
T ss_pred             HHHHHHcCC-------------------HHHHHHHHHHHHHhhCc
Confidence            999999998                   66777777777776544

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.54  E-value=8.6e-14  Score=131.93  Aligned_cols=117  Identities=31%  Similarity=0.317  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 010976          158 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN  237 (496)
Q Consensus       158 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~  237 (496)
                      -+.+-|.-+.+.++              |++|+..|.+||+++|+++..|.|++.+|.+    +|.++.|+       +.
T Consensus        83 ~LK~eGN~~m~~~~--------------Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~----Lg~~~~AV-------kD  137 (304)
T KOG0553|consen   83 SLKNEGNKLMKNKD--------------YQEAVDKYTEAIELDPTNAVYYCNRAAAYSK----LGEYEDAV-------KD  137 (304)
T ss_pred             HHHHHHHHHHHhhh--------------HHHHHHHHHHHHhcCCCcchHHHHHHHHHHH----hcchHHHH-------HH
Confidence            34455666666666              9999999999999999999999999999999    99999999       89


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010976          238 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED  309 (496)
Q Consensus       238 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~  309 (496)
                      ++.||.+||++..+|..||.+|..+|++          .+|+..|++||.++|++.....+|..+-..+++.
T Consensus       138 ce~Al~iDp~yskay~RLG~A~~~~gk~----------~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~  199 (304)
T KOG0553|consen  138 CESALSIDPHYSKAYGRLGLAYLALGKY----------EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEP  199 (304)
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHccCcH----------HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999          9999999999999999999999999998888863

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.53  E-value=7.4e-14  Score=137.51  Aligned_cols=164  Identities=18%  Similarity=0.139  Sum_probs=119.8

Q ss_pred             hhhcHHHHHHHHHHhhccc---------hhhhHhhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCCCCC
Q 010976          110 LAEQNNAAMELINSVTGVD---------EEGRSRQRILTFAAKRYANAIERN--PEDYDALYNWALVLQESADNVSLDST  178 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~l~~~---------~~~~~~~g~~~~Ai~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~  178 (496)
                      ..+++++|+..+.+.....         ...+...++++++...++++....  +.++..|..+|.++.+.|+       
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~-------  161 (280)
T PF13429_consen   89 QDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD-------  161 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH-------
T ss_pred             ccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC-------
Confidence            4566666666665544332         233456799999999999988765  7889999999999999999       


Q ss_pred             CcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010976          179 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA  258 (496)
Q Consensus       179 ~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  258 (496)
                             +++|+++|+++++++|++..+...++.++..    .|+++++.       ..+.......|.++..+..+|.+
T Consensus       162 -------~~~A~~~~~~al~~~P~~~~~~~~l~~~li~----~~~~~~~~-------~~l~~~~~~~~~~~~~~~~la~~  223 (280)
T PF13429_consen  162 -------PDKALRDYRKALELDPDDPDARNALAWLLID----MGDYDEAR-------EALKRLLKAAPDDPDLWDALAAA  223 (280)
T ss_dssp             -------HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT----TCHHHHHH-------HHHHHHHHH-HTSCCHCHHHHHH
T ss_pred             -------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----CCChHHHH-------HHHHHHHHHCcCHHHHHHHHHHH
Confidence                   9999999999999999999999999999999    99999977       56666666668888899999999


Q ss_pred             HHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          259 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       259 l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                      +..+|++          ++|+..|+++++.+|+++..+.++|.++...|+
T Consensus       224 ~~~lg~~----------~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~  263 (280)
T PF13429_consen  224 YLQLGRY----------EEALEYLEKALKLNPDDPLWLLAYADALEQAGR  263 (280)
T ss_dssp             HHHHT-H----------HHHHHHHHHHHHHSTT-HHHHHHHHHHHT----
T ss_pred             hcccccc----------ccccccccccccccccccccccccccccccccc
Confidence            9999999          999999999999999999999999999999998

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=1.7e-12  Score=127.07  Aligned_cols=179  Identities=19%  Similarity=0.139  Sum_probs=164.7

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976          133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  212 (496)
Q Consensus       133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  212 (496)
                      +..+++..|+.+-+++|+.+|++..++...|.++..+++              .++|+-+|+.|..+.|..-+.|-.|-.
T Consensus       311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R--------------~~~A~IaFR~Aq~Lap~rL~~Y~GL~h  376 (564)
T KOG1174|consen  311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALER--------------HTQAVIAFRTAQMLAPYRLEIYRGLFH  376 (564)
T ss_pred             hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccc--------------hHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            446889999999999999999999999999999999999              999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHH-----------------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 010976          213 AISDRAKMRGRTKEAEELW-----------------------------KQATKNYEKAVQLNWNSPQALNNWGLALQELS  263 (496)
Q Consensus       213 ~~~~~~~~~g~~~eA~~~~-----------------------------~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g  263 (496)
                      +|..    .|++.||.-.-                             ++|.+.|++++.++|.+..+-+.++.++...|
T Consensus       377 sYLA----~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg  452 (564)
T KOG1174|consen  377 SYLA----QKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEG  452 (564)
T ss_pred             HHHh----hchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhC
Confidence            9999    99998887321                             57999999999999999999999999999999


Q ss_pred             CcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 010976          264 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP  343 (496)
Q Consensus       264 ~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p  343 (496)
                      ++          +.+|..++++|...|+ ...+..||.++...+.                   ++++..+|..|+++||
T Consensus       453 ~~----------~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne-------------------~Q~am~~y~~ALr~dP  502 (564)
T KOG1174|consen  453 PT----------KDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNE-------------------PQKAMEYYYKALRQDP  502 (564)
T ss_pred             cc----------chHHHHHHHHHhhccc-cHHHHHHHHHHHHhhh-------------------HHHHHHHHHHHHhcCc
Confidence            99          9999999999999887 5678899999998888                   8999999999999999


Q ss_pred             cHHHHHHHHHhhhcCC
Q 010976          344 SYSVYSSALRLVRSML  359 (496)
Q Consensus       344 ~~~~y~~al~~~~~~~  359 (496)
                      .+......+..+.+.-
T Consensus       503 ~~~~sl~Gl~~lEK~~  518 (564)
T KOG1174|consen  503 KSKRTLRGLRLLEKSD  518 (564)
T ss_pred             cchHHHHHHHHHHhcc
Confidence            9998888888776544

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.52  E-value=6.9e-13  Score=127.00  Aligned_cols=179  Identities=19%  Similarity=0.253  Sum_probs=151.0

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  211 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  211 (496)
                      +...|++..|+..|..|++.+|++..+++.+|.+|..+|+              -..|+..+.++|++.|+...+...+|
T Consensus        48 lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGk--------------sk~al~Dl~rVlelKpDF~~ARiQRg  113 (504)
T KOG0624|consen   48 LLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGK--------------SKAALQDLSRVLELKPDFMAARIQRG  113 (504)
T ss_pred             HHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcC--------------CccchhhHHHHHhcCccHHHHHHHhc
Confidence            3446889999999999999999999999999999999999              88899999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHH------------------------------------------HHHHHHHHHhcCCCCH
Q 010976          212 IAISDRAKMRGRTKEAEELWKQ------------------------------------------ATKNYEKAVQLNWNSP  249 (496)
Q Consensus       212 ~~~~~~~~~~g~~~eA~~~~~~------------------------------------------A~~~~~~Al~l~P~~~  249 (496)
                      .++..    +|++++|...|++                                          ++......|++.|=++
T Consensus       114 ~vllK----~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda  189 (504)
T KOG0624|consen  114 VVLLK----QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDA  189 (504)
T ss_pred             hhhhh----cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchh
Confidence            99999    9999999876633                                          6667777778888888


Q ss_pred             HHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHH
Q 010976          250 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYS  329 (496)
Q Consensus       250 ~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  329 (496)
                      ..+...+.||...|+.          ..||..++.+-++..++.+.+|.+..+++..|+                   ..
T Consensus       190 ~l~~~Rakc~i~~~e~----------k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd-------------------~~  240 (504)
T KOG0624|consen  190 SLRQARAKCYIAEGEP----------KKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD-------------------AE  240 (504)
T ss_pred             HHHHHHHHHHHhcCcH----------HHHHHHHHHHHhccccchHHHHHHHHHHHhhhh-------------------HH
Confidence            8888888888888888          899999999999988999999999999999887                   66


Q ss_pred             HHHHHHHHHHhcCCcHH----HHHHHHHhhhc
Q 010976          330 QSAIYIAAAHALKPSYS----VYSSALRLVRS  357 (496)
Q Consensus       330 ~A~~~~~~a~~l~p~~~----~y~~al~~~~~  357 (496)
                      .+...++.+++++|++.    .|.+.-.+++.
T Consensus       241 ~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~  272 (504)
T KOG0624|consen  241 NSLKEIRECLKLDPDHKLCFPFYKKLKKVVKS  272 (504)
T ss_pred             HHHHHHHHHHccCcchhhHHHHHHHHHHHHHH
Confidence            77788999999999987    44444444443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.52  E-value=1.6e-12  Score=145.13  Aligned_cols=186  Identities=11%  Similarity=-0.025  Sum_probs=167.6

Q ss_pred             hhhhcHHHHHHHHHHhhccc-----------hhhhHhhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCC
Q 010976          109 QLAEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERNPED----YDALYNWALVLQESADNV  173 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~l~~~-----------~~~~~~~g~~~~Ai~~~~~al~~~P~~----~~a~~~lg~~~~~~~~~~  173 (496)
                      ...+++++|+..|.+++...           +..+..+|++++|+..|+++++.+|.+    ...+..++.++...++  
T Consensus       248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~--  325 (765)
T PRK10049        248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN--  325 (765)
T ss_pred             HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc--
Confidence            35578999999999988753           234667899999999999999998876    4677888889999999  


Q ss_pred             CCCCCCcchhhhHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010976          174 SLDSTSPSKDALLEEACKKYDEATRLCPT---------------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY  238 (496)
Q Consensus       174 ~~~~~~~~~~~~~~~A~~~~~~Al~l~P~---------------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~  238 (496)
                                  +++|+..+++++..+|.               ...+++.+|.++..    .|++++|+       ..+
T Consensus       326 ------------~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~----~g~~~eA~-------~~l  382 (765)
T PRK10049        326 ------------YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY----SNDLPQAE-------MRA  382 (765)
T ss_pred             ------------HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH----cCCHHHHH-------HHH
Confidence                        99999999999999873               24578899999999    99999999       899


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCC
Q 010976          239 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVN  318 (496)
Q Consensus       239 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~  318 (496)
                      ++++...|++..+++++|.++...|++          ++|+..++++++++|++..+++.+|.++..+|+          
T Consensus       383 ~~al~~~P~n~~l~~~lA~l~~~~g~~----------~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~----------  442 (765)
T PRK10049        383 RELAYNAPGNQGLRIDYASVLQARGWP----------RAAENELKKAEVLEPRNINLEVEQAWTALDLQE----------  442 (765)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC----------
Confidence            999999999999999999999999999          999999999999999999999999999999998          


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHhcCCcHHHH
Q 010976          319 PREVSPNELYSQSAIYIAAAHALKPSYSVY  348 (496)
Q Consensus       319 ~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y  348 (496)
                               |..|...++++++..|+++..
T Consensus       443 ---------~~~A~~~~~~ll~~~Pd~~~~  463 (765)
T PRK10049        443 ---------WRQMDVLTDDVVAREPQDPGV  463 (765)
T ss_pred             ---------HHHHHHHHHHHHHhCCCCHHH
Confidence                     999999999999999999943

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.51  E-value=1.3e-13  Score=130.81  Aligned_cols=109  Identities=24%  Similarity=0.296  Sum_probs=105.4

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  211 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  211 (496)
                      ..+.++|.+|+..|.+||+++|.++..|.+++.+|.++|.              ++.|++.++.||.+||++..+|..||
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~--------------~~~AVkDce~Al~iDp~yskay~RLG  156 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGE--------------YEDAVKDCESALSIDPHYSKAYGRLG  156 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcc--------------hHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            4567999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      .+|..    +|++.+|+       +.|+++|+++|++...+.+|..+-.++++.
T Consensus       157 ~A~~~----~gk~~~A~-------~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~  199 (304)
T KOG0553|consen  157 LAYLA----LGKYEEAI-------EAYKKALELDPDNESYKSNLKIAEQKLNEP  199 (304)
T ss_pred             HHHHc----cCcHHHHH-------HHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence            99999    99999999       899999999999999999999999998887

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.51  E-value=5e-13  Score=116.37  Aligned_cols=119  Identities=17%  Similarity=0.158  Sum_probs=113.2

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcC
Q 010976          143 KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG  222 (496)
Q Consensus       143 ~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g  222 (496)
                      ..|+++++++|++..+.+.+|..+...|+              +++|+..|++++.++|++..+++++|.++..    +|
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~   65 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGR--------------YDEALKLFQLLAAYDPYNSRYWLGLAACCQM----LK   65 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHccc--------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HH
Confidence            46889999999999999999999999999              9999999999999999999999999999999    99


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHH
Q 010976          223 RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI  296 (496)
Q Consensus       223 ~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~  296 (496)
                      ++++|+       ..|++++..+|.++..++++|.++...|++          ++|+..|+++++++|++....
T Consensus        66 ~~~~A~-------~~~~~~~~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~  122 (135)
T TIGR02552        66 EYEEAI-------DAYALAAALDPDDPRPYFHAAECLLALGEP----------ESALKALDLAIEICGENPEYS  122 (135)
T ss_pred             HHHHHH-------HHHHHHHhcCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhccccchHH
Confidence            999998       899999999999999999999999999999          999999999999999886643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.48  E-value=9e-13  Score=114.75  Aligned_cols=124  Identities=18%  Similarity=0.144  Sum_probs=116.1

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHH
Q 010976          191 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE  270 (496)
Q Consensus       191 ~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~  270 (496)
                      +.|++++.++|++..+.+.+|.++..    .|++++|+       ..|++++.++|.++.+++++|.++..+|++     
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~----~~~~~~A~-------~~~~~~~~~~p~~~~~~~~la~~~~~~~~~-----   67 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQ----QGRYDEAL-------KLFQLLAAYDPYNSRYWLGLAACCQMLKEY-----   67 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHH----cccHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHHHHH-----
Confidence            46889999999999999999999999    99999999       889999999999999999999999999999     


Q ss_pred             hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHH
Q 010976          271 KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS  350 (496)
Q Consensus       271 ~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~  350 (496)
                           ++|+..|++++.++|+++..++++|.++...|+                   +..|..+|+++++++|++..+..
T Consensus        68 -----~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~al~~~p~~~~~~~  123 (135)
T TIGR02552        68 -----EEAIDAYALAAALDPDDPRPYFHAAECLLALGE-------------------PESALKALDLAIEICGENPEYSE  123 (135)
T ss_pred             -----HHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhccccchHHH
Confidence                 999999999999999999999999999999999                   89999999999999999987655


Q ss_pred             HHHh
Q 010976          351 ALRL  354 (496)
Q Consensus       351 al~~  354 (496)
                      ....
T Consensus       124 ~~~~  127 (135)
T TIGR02552       124 LKER  127 (135)
T ss_pred             HHHH
Confidence            4443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.46  E-value=1e-12  Score=125.21  Aligned_cols=181  Identities=18%  Similarity=0.171  Sum_probs=126.8

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY  208 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~  208 (496)
                      +.|++++|.+.+|.+.++.+++..| .++.+..|+.+|....+              ...|+..|.+.+...|.+...+.
T Consensus       230 gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQ--------------P~~AL~~~~~gld~fP~~VT~l~  294 (478)
T KOG1129|consen  230 GKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQ--------------PERALLVIGEGLDSFPFDVTYLL  294 (478)
T ss_pred             HHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhcc--------------HHHHHHHHhhhhhcCCchhhhhh
Confidence            4455555666666666666655554 34555555555555555              55555555555555555555555


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH---------------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010976          209 NWAIAISDRAKMRGRTKEAEELWKQ---------------------------ATKNYEKAVQLNWNSPQALNNWGLALQE  261 (496)
Q Consensus       209 ~lg~~~~~~~~~~g~~~eA~~~~~~---------------------------A~~~~~~Al~l~P~~~~a~~~lg~~l~~  261 (496)
                      ..+.++..    ++++++|+++|+.                           |+.+|++.|++.-.+++.++|+|.|+..
T Consensus       295 g~ARi~ea----m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y  370 (478)
T KOG1129|consen  295 GQARIHEA----MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY  370 (478)
T ss_pred             hhHHHHHH----HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh
Confidence            55555555    5555555544422                           4488888888888889999999999888


Q ss_pred             ccCcchHHHhhhhHHHHHHHHHHHHHhc--CC-CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHH
Q 010976          262 LSAIVPAREKQTIVRTAISKFRAAIQLQ--FD-FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAA  338 (496)
Q Consensus       262 ~g~~~~A~~~~~~~~~Ai~~~~~Al~l~--P~-~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a  338 (496)
                      .+++          +-++..|++|+...  |+ -.++|||||.+....|+                   +..|..+|+-+
T Consensus       371 aqQ~----------D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD-------------------~nlA~rcfrla  421 (478)
T KOG1129|consen  371 AQQI----------DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD-------------------FNLAKRCFRLA  421 (478)
T ss_pred             hcch----------hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc-------------------hHHHHHHHHHH
Confidence            8888          88888888888864  32 35788888888888888                   88999999999


Q ss_pred             HhcCCcHHHHHHHHHhhhc
Q 010976          339 HALKPSYSVYSSALRLVRS  357 (496)
Q Consensus       339 ~~l~p~~~~y~~al~~~~~  357 (496)
                      +..|+++.....+|.++..
T Consensus       422 L~~d~~h~ealnNLavL~~  440 (478)
T KOG1129|consen  422 LTSDAQHGEALNNLAVLAA  440 (478)
T ss_pred             hccCcchHHHHHhHHHHHh
Confidence            9999999977777776654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.45  E-value=6.6e-13  Score=130.74  Aligned_cols=190  Identities=19%  Similarity=0.182  Sum_probs=115.7

Q ss_pred             hhhhcHHHHHHHHHHhhccchh---------hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 010976          109 QLAEQNNAAMELINSVTGVDEE---------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS  179 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~l~~~~~---------~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~  179 (496)
                      ...++++.|...+.+++.....         .+...+++++|+.++.++.+..+ ++..+..+..++...++        
T Consensus        55 ~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~--------  125 (280)
T PF13429_consen   55 WSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGD--------  125 (280)
T ss_dssp             ----------------------------------------------------------------H-HHHTT---------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccchhhHHHHHHHHHhH--------
Confidence            3456667777777766655511         12356899999999999988764 56778888888999999        


Q ss_pred             cchhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976          180 PSKDALLEEACKKYDEATRLC--PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL  257 (496)
Q Consensus       180 ~~~~~~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  257 (496)
                            ++++...++++....  +.++..|+.+|.++..    .|++++|+       .+|+++++++|++..++..++.
T Consensus       126 ------~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~----~G~~~~A~-------~~~~~al~~~P~~~~~~~~l~~  188 (280)
T PF13429_consen  126 ------YDEAEELLEKLEELPAAPDSARFWLALAEIYEQ----LGDPDKAL-------RDYRKALELDPDDPDARNALAW  188 (280)
T ss_dssp             ------HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH----CCHHHHHH-------HHHHHHHHH-TT-HHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCCHHHHHHHHH
Confidence                  999999999988765  6788999999999999    99999999       8999999999999999999999


Q ss_pred             HHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHH
Q 010976          258 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAA  337 (496)
Q Consensus       258 ~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~  337 (496)
                      ++...|++          +++...++...+..|+++..+..+|.++..+|+                   +..|..+|++
T Consensus       189 ~li~~~~~----------~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~-------------------~~~Al~~~~~  239 (280)
T PF13429_consen  189 LLIDMGDY----------DEAREALKRLLKAAPDDPDLWDALAAAYLQLGR-------------------YEEALEYLEK  239 (280)
T ss_dssp             HHCTTCHH----------HHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT--------------------HHHHHHHHHH
T ss_pred             HHHHCCCh----------HHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc-------------------cccccccccc
Confidence            99999999          888888888888889999999999999999999                   8999999999


Q ss_pred             HHhcCCcHHHHHHHHH
Q 010976          338 AHALKPSYSVYSSALR  353 (496)
Q Consensus       338 a~~l~p~~~~y~~al~  353 (496)
                      +++.+|+++.....+.
T Consensus       240 ~~~~~p~d~~~~~~~a  255 (280)
T PF13429_consen  240 ALKLNPDDPLWLLAYA  255 (280)
T ss_dssp             HHHHSTT-HHHHHHHH
T ss_pred             cccccccccccccccc
Confidence            9999999995544443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.45  E-value=9.4e-12  Score=132.33  Aligned_cols=73  Identities=14%  Similarity=0.063  Sum_probs=58.2

Q ss_pred             hhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHH
Q 010976          271 KQTIVRTAISKFRAAIQLQFD-FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS  349 (496)
Q Consensus       271 ~~~~~~~Ai~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~  349 (496)
                      ..|++++|+..|..++...+. +...|+.+|.||..+|.                   |..|+++|++++.++|++.+.+
T Consensus       426 ~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e-------------------~e~A~e~y~kvl~~~p~~~D~R  486 (895)
T KOG2076|consen  426 NIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE-------------------YEEAIEFYEKVLILAPDNLDAR  486 (895)
T ss_pred             hcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh-------------------HHHHHHHHHHHHhcCCCchhhh
Confidence            467778888888888777653 46788999999999998                   8999999999999999999777


Q ss_pred             HHHHhhhcCCchh
Q 010976          350 SALRLVRSMLPLP  362 (496)
Q Consensus       350 ~al~~~~~~~p~~  362 (496)
                      -.|.-+...+..+
T Consensus       487 i~Lasl~~~~g~~  499 (895)
T KOG2076|consen  487 ITLASLYQQLGNH  499 (895)
T ss_pred             hhHHHHHHhcCCH
Confidence            7766655545333

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.44  E-value=9.1e-12  Score=116.21  Aligned_cols=166  Identities=22%  Similarity=0.175  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 010976          139 TFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRA  218 (496)
Q Consensus       139 ~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~  218 (496)
                      ..+...+-+....+|++..+ .+++..+...|+              -+.+..+..++...+|.+...+..+|.....  
T Consensus        50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~--------------a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~--  112 (257)
T COG5010          50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGD--------------ADSSLAVLQKSAIAYPKDRELLAAQGKNQIR--  112 (257)
T ss_pred             hHHHHHHHHHHhcCcchHHH-HHHHHHHHhccc--------------ccchHHHHhhhhccCcccHHHHHHHHHHHHH--
Confidence            33666666677777888777 777888888777              6777777777777777777777777777777  


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHH
Q 010976          219 KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN  298 (496)
Q Consensus       219 ~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~  298 (496)
                        .|+|.+|+       ..++++..++|++.++|+.+|.+|.+.|++          ++|...|.+++++.|+++.+.+|
T Consensus       113 --~g~~~~A~-------~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~----------~~Ar~ay~qAl~L~~~~p~~~nN  173 (257)
T COG5010         113 --NGNFGEAV-------SVLRKAARLAPTDWEAWNLLGAALDQLGRF----------DEARRAYRQALELAPNEPSIANN  173 (257)
T ss_pred             --hcchHHHH-------HHHHHHhccCCCChhhhhHHHHHHHHccCh----------hHHHHHHHHHHHhccCCchhhhh
Confidence              77777777       777777888888888888888888888877          78888888888888888888888


Q ss_pred             HHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhhhcCC
Q 010976          299 LGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSML  359 (496)
Q Consensus       299 lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~~~~~~  359 (496)
                      +|..|.-.|+                   +..|..++..+...-+.+....++|.++....
T Consensus       174 lgms~~L~gd-------------------~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~  215 (257)
T COG5010         174 LGMSLLLRGD-------------------LEDAETLLLPAYLSPAADSRVRQNLALVVGLQ  215 (257)
T ss_pred             HHHHHHHcCC-------------------HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhc
Confidence            8888877777                   67777777777777776776666666654433

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=5.6e-12  Score=127.51  Aligned_cols=162  Identities=21%  Similarity=0.160  Sum_probs=132.0

Q ss_pred             hhhcHHHHHHHHHHhhccc--hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHH
Q 010976          110 LAEQNNAAMELINSVTGVD--EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLE  187 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~l~~~--~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~  187 (496)
                      ..+.++.++.+|.+++...  .....+....++++.......-++|.-...-...|+.++..|+              |.
T Consensus       310 k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gd--------------y~  375 (539)
T KOG0548|consen  310 KREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGD--------------YP  375 (539)
T ss_pred             hHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccC--------------HH
Confidence            3345555555555544333  2233334445555555555555567666667777888888888              99


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcch
Q 010976          188 EACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVP  267 (496)
Q Consensus       188 ~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~  267 (496)
                      .|+++|.+||..+|+++..|.|+|.||..    +|.+..|+       ..++++++++|++..+|.+-|.++..+.+|  
T Consensus       376 ~Av~~YteAIkr~P~Da~lYsNRAac~~k----L~~~~~aL-------~Da~~~ieL~p~~~kgy~RKg~al~~mk~y--  442 (539)
T KOG0548|consen  376 EAVKHYTEAIKRDPEDARLYSNRAACYLK----LGEYPEAL-------KDAKKCIELDPNFIKAYLRKGAALRAMKEY--  442 (539)
T ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHHH----HhhHHHHH-------HHHHHHHhcCchHHHHHHHHHHHHHHHHHH--
Confidence            99999999999999999999999999999    99999999       889999999999999999999999999999  


Q ss_pred             HHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 010976          268 AREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL  306 (496)
Q Consensus       268 A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~  306 (496)
                              +.|++.|+++++++|++.++.-.+..|+..+
T Consensus       443 --------dkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  443 --------DKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             --------HHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence                    9999999999999999999999999988764

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.43  E-value=7.4e-12  Score=139.91  Aligned_cols=143  Identities=10%  Similarity=-0.019  Sum_probs=136.0

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976          133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  212 (496)
Q Consensus       133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  212 (496)
                      ...|++++|+..|.+++..+|....++..+|.++...|+              +++|+..|+++++++|++..++..+|.
T Consensus        26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~la~   91 (765)
T PRK10049         26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQ--------------WQNSLTLWQKALSLEPQNDDYQRGLIL   91 (765)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            346999999999999999999999999999999999999              999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976          213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  292 (496)
Q Consensus       213 ~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~  292 (496)
                      ++..    .|++++|+       ..++++++.+|+++. +..+|.++...|++          ++|+..|+++++++|++
T Consensus        92 ~l~~----~g~~~eA~-------~~l~~~l~~~P~~~~-~~~la~~l~~~g~~----------~~Al~~l~~al~~~P~~  149 (765)
T PRK10049         92 TLAD----AGQYDEAL-------VKAKQLVSGAPDKAN-LLALAYVYKRAGRH----------WDELRAMTQALPRAPQT  149 (765)
T ss_pred             HHHH----CCCHHHHH-------HHHHHHHHhCCCCHH-HHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCC
Confidence            9999    99999999       899999999999999 99999999999999          99999999999999999


Q ss_pred             HHHHHHHHHHHHHcchhHH
Q 010976          293 HRAIYNLGTVLYGLAEDTL  311 (496)
Q Consensus       293 ~~a~~~lg~~~~~~g~~~~  311 (496)
                      ..++..++.++...+....
T Consensus       150 ~~~~~~la~~l~~~~~~e~  168 (765)
T PRK10049        150 QQYPTEYVQALRNNRLSAP  168 (765)
T ss_pred             HHHHHHHHHHHHHCCChHH
Confidence            9999999999988776443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.42  E-value=4.9e-12  Score=110.68  Aligned_cols=108  Identities=18%  Similarity=0.232  Sum_probs=102.5

Q ss_pred             HHHHhC-CCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHH
Q 010976          147 NAIERN-PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK  225 (496)
Q Consensus       147 ~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~  225 (496)
                      ....+. ++..+..|.+|..++..|+              +++|++.|+-...++|.++..|++||.++..    +|++.
T Consensus        25 ~l~~~~~~~~l~~lY~~A~~ly~~G~--------------l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~----~g~~~   86 (157)
T PRK15363         25 MLLDDDVTQPLNTLYRYAMQLMEVKE--------------FAGAARLFQLLTIYDAWSFDYWFRLGECCQA----QKHWG   86 (157)
T ss_pred             HHHCCChHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----HhhHH
Confidence            345567 8888999999999999999              9999999999999999999999999999999    99999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc
Q 010976          226 EAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ  289 (496)
Q Consensus       226 eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~  289 (496)
                      +|+       .+|.+|+.++|+++.+++++|.++..+|+.          +.|++.|+.|+...
T Consensus        87 ~AI-------~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~----------~~A~~aF~~Ai~~~  133 (157)
T PRK15363         87 EAI-------YAYGRAAQIKIDAPQAPWAAAECYLACDNV----------CYAIKALKAVVRIC  133 (157)
T ss_pred             HHH-------HHHHHHHhcCCCCchHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHh
Confidence            999       899999999999999999999999999999          99999999999886

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.41  E-value=9.4e-12  Score=129.51  Aligned_cols=174  Identities=17%  Similarity=0.159  Sum_probs=149.1

Q ss_pred             hhhhhhcHHHHHHHHHHhhccc------------------hhhhHhhccHHHHHHHHHHHHHh--------CCCCHHHHH
Q 010976          107 PHQLAEQNNAAMELINSVTGVD------------------EEGRSRQRILTFAAKRYANAIER--------NPEDYDALY  160 (496)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~l~~~------------------~~~~~~~g~~~~Ai~~~~~al~~--------~P~~~~a~~  160 (496)
                      .+...+++++|+.++.+++...                  +..+..++++.+|+..|++|+.+        +|..+.++.
T Consensus       208 ~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~  287 (508)
T KOG1840|consen  208 MYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLN  287 (508)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            4457899999999999988872                  34466789999999999999986        466678999


Q ss_pred             HHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010976          161 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK  232 (496)
Q Consensus       161 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~  232 (496)
                      +||.+|...|+              |++|..+|++|+++        .|.-+..+.+++.++..    ++++++|+.+|+
T Consensus       288 nLa~ly~~~GK--------------f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~----~~~~Eea~~l~q  349 (508)
T KOG1840|consen  288 NLAVLYYKQGK--------------FAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS----MNEYEEAKKLLQ  349 (508)
T ss_pred             HHHHHHhccCC--------------hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH----hcchhHHHHHHH
Confidence            99999999999              99999999999998        33445678899999999    999999999999


Q ss_pred             HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHH
Q 010976          233 QATKNYEKAVQLNW-NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ--------FDFHRAIYNLGTVL  303 (496)
Q Consensus       233 ~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~--------P~~~~a~~~lg~~~  303 (496)
                      ++++.|..+...+- .-+..+.|||.+|+.+|++          ++|...|++||.+.        +.....+++||..|
T Consensus       350 ~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~----------~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~  419 (508)
T KOG1840|consen  350 KALKIYLDAPGEDNVNLAKIYANLAELYLKMGKY----------KEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAY  419 (508)
T ss_pred             HHHHHHHhhccccchHHHHHHHHHHHHHHHhcch----------hHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHH
Confidence            99999998776553 6788999999999999999          99999999999873        34467888999999


Q ss_pred             HHcch
Q 010976          304 YGLAE  308 (496)
Q Consensus       304 ~~~g~  308 (496)
                      .++++
T Consensus       420 ~~~k~  424 (508)
T KOG1840|consen  420 EELKK  424 (508)
T ss_pred             HHhcc
Confidence            77775

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.41  E-value=1.1e-11  Score=134.93  Aligned_cols=135  Identities=11%  Similarity=0.069  Sum_probs=125.8

Q ss_pred             hhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010976          130 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN  209 (496)
Q Consensus       130 ~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~  209 (496)
                      ......|.+++|...++.+++++|++..++.+++.++.++++              +++|+..+++++..+|+++.+++.
T Consensus        94 ~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~--------------~eeA~~~~~~~l~~~p~~~~~~~~  159 (694)
T PRK15179         94 RALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQG--------------IEAGRAEIELYFSGGSSSAREILL  159 (694)
T ss_pred             HHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHhhcCCCCHHHHHH
Confidence            334567999999999999999999999999999999999999              999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc
Q 010976          210 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ  289 (496)
Q Consensus       210 lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~  289 (496)
                      +|.++..    +|++++|+       .+|++++..+|+++.++.++|.++..+|+.          ++|...|++|+...
T Consensus       160 ~a~~l~~----~g~~~~A~-------~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~----------~~A~~~~~~a~~~~  218 (694)
T PRK15179        160 EAKSWDE----IGQSEQAD-------ACFERLSRQHPEFENGYVGWAQSLTRRGAL----------WRARDVLQAGLDAI  218 (694)
T ss_pred             HHHHHHH----hcchHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhh
Confidence            9999999    99999999       899999999999999999999999999999          99999999999987


Q ss_pred             CCCHHHHHHH
Q 010976          290 FDFHRAIYNL  299 (496)
Q Consensus       290 P~~~~a~~~l  299 (496)
                      .+-...+.++
T Consensus       219 ~~~~~~~~~~  228 (694)
T PRK15179        219 GDGARKLTRR  228 (694)
T ss_pred             CcchHHHHHH
Confidence            6655654443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.39  E-value=3e-12  Score=122.03  Aligned_cols=158  Identities=15%  Similarity=0.144  Sum_probs=126.6

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  214 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~  214 (496)
                      ++++++|+++|+.+++++|.+.++....|.-|+--++              .+-|+.+|++.|++--.+++.+.|+|.|.
T Consensus       303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~--------------PE~AlryYRRiLqmG~~speLf~NigLCC  368 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNN--------------PEMALRYYRRILQMGAQSPELFCNIGLCC  368 (478)
T ss_pred             HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCC--------------hHHHHHHHHHHHHhcCCChHHHhhHHHHH
Confidence            4566666666666666666666666666666666666              88888888888888888888899999998


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC--C-CCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976          215 SDRAKMRGRTKEAEELWKQATKNYEKAVQLN--W-NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  291 (496)
Q Consensus       215 ~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~--P-~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~  291 (496)
                      ..    .++++-++       ..|++|+..-  | .-...|+|+|.+....|++          .-|..+|+-+|..|++
T Consensus       369 ~y----aqQ~D~~L-------~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~----------nlA~rcfrlaL~~d~~  427 (478)
T KOG1129|consen  369 LY----AQQIDLVL-------PSFQRALSTATQPGQAADVWYNLGFVAVTIGDF----------NLAKRCFRLALTSDAQ  427 (478)
T ss_pred             Hh----hcchhhhH-------HHHHHHHhhccCcchhhhhhhccceeEEeccch----------HHHHHHHHHHhccCcc
Confidence            88    88888888       7777777554  3 3578999999999999999          9999999999999999


Q ss_pred             CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          292 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       292 ~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                      +.++++|||.+-.+.|+                   ...|..++..|-...|+..
T Consensus       428 h~ealnNLavL~~r~G~-------------------i~~Arsll~~A~s~~P~m~  463 (478)
T KOG1129|consen  428 HGEALNNLAVLAARSGD-------------------ILGARSLLNAAKSVMPDMA  463 (478)
T ss_pred             hHHHHHhHHHHHhhcCc-------------------hHHHHHHHHHhhhhCcccc
Confidence            99999999999999998                   5677777777777776544

>TIGR00540 hemY_coli hemY protein

Probab=99.39  E-value=1.6e-10  Score=120.10  Aligned_cols=207  Identities=14%  Similarity=0.003  Sum_probs=165.8

Q ss_pred             hhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCCCCCC
Q 010976          109 QLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDY-DALYNWALVLQESADNVSLDS  177 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~-~a~~~lg~~~~~~~~~~~~~~  177 (496)
                      ...|+++.|.+.+.++....          ++....+|+++.|..+|.++.+..|++. .+...++.++...|+      
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~------  168 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE------  168 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC------
Confidence            45677888887777766553          2334456899999999999988888875 456667888888888      


Q ss_pred             CCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------
Q 010976          178 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT----------------------  235 (496)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~----------------------  235 (496)
                              +++|...+++.++.+|+++.++..++.++..    .|++++|++.+++..                      
T Consensus       169 --------~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~----~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l  236 (409)
T TIGR00540       169 --------LHAARHGVDKLLEMAPRHKEVLKLAEEAYIR----SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL  236 (409)
T ss_pred             --------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence                    9999999999999999999999999999988    999988886654311                      


Q ss_pred             ---------HHHHHHHhcCC----CCHHHHHHHHHHHHHccCcchHHH--------------------------hhhhHH
Q 010976          236 ---------KNYEKAVQLNW----NSPQALNNWGLALQELSAIVPARE--------------------------KQTIVR  276 (496)
Q Consensus       236 ---------~~~~~Al~l~P----~~~~a~~~lg~~l~~~g~~~~A~~--------------------------~~~~~~  276 (496)
                               +.+.++.+..|    +++..+..++..+...|++++|..                          ..++.+
T Consensus       237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~  316 (409)
T TIGR00540       237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNE  316 (409)
T ss_pred             HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChH
Confidence                     24444555566    589999999999999999988821                          236678


Q ss_pred             HHHHHHHHHHHhcCCCH--HHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHH--HHHhcCCcHHHHHHHH
Q 010976          277 TAISKFRAAIQLQFDFH--RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIA--AAHALKPSYSVYSSAL  352 (496)
Q Consensus       277 ~Ai~~~~~Al~l~P~~~--~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~--~a~~l~p~~~~y~~al  352 (496)
                      .++..++++++.+|+++  ..+..+|.+++..|+                   |.+|..+|+  ++++.+|+...+....
T Consensus       317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~-------------------~~~A~~~le~a~a~~~~p~~~~~~~La  377 (409)
T TIGR00540       317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE-------------------FIEAADAFKNVAACKEQLDANDLAMAA  377 (409)
T ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc-------------------HHHHHHHHHHhHHhhcCCCHHHHHHHH
Confidence            89999999999999999  889999999999999                   999999999  6888999988766433

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.38  E-value=9.8e-12  Score=129.39  Aligned_cols=166  Identities=21%  Similarity=0.238  Sum_probs=142.5

Q ss_pred             hhhHhhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh--
Q 010976          130 EGRSRQRILTFAAKRYANAIER--------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--  199 (496)
Q Consensus       130 ~~~~~~g~~~~Ai~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--  199 (496)
                      ..+..+|+|++|+..|+.|+++        .|.-......+|.+|..+++              |.+|+..|++|+.+  
T Consensus       207 ~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k--------------~~eAv~ly~~AL~i~e  272 (508)
T KOG1840|consen  207 EMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGK--------------YDEAVNLYEEALTIRE  272 (508)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHHHH
Confidence            3467789999999999999998        67777778889999999999              99999999999998  


Q ss_pred             ------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCcchHHHhh
Q 010976          200 ------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQ  272 (496)
Q Consensus       200 ------~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~~A~~~~  272 (496)
                            +|.-+.++.+||.+|..    .|++++|..+++.|+..+++.+..+ |.-...+.+++.++..++++       
T Consensus       273 ~~~G~~h~~va~~l~nLa~ly~~----~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~-------  341 (508)
T KOG1840|consen  273 EVFGEDHPAVAATLNNLAVLYYK----QGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEY-------  341 (508)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHhc----cCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcch-------
Confidence                  56667889999999999    9999999999999999999955444 33456788999999999999       


Q ss_pred             hhHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 010976          273 TIVRTAISKFRAAIQLQ--------FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK  342 (496)
Q Consensus       273 ~~~~~Ai~~~~~Al~l~--------P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~  342 (496)
                         ++|+..|++++++-        +.-+..+.|||.+|+.+|+                   |.+|..+|++|+.+.
T Consensus       342 ---Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk-------------------~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  342 ---EEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK-------------------YKEAEELYKKAIQIL  397 (508)
T ss_pred             ---hHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc-------------------hhHHHHHHHHHHHHH
Confidence               99999999999872        2446789999999999999                   677777777776653

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=4.1e-11  Score=121.36  Aligned_cols=173  Identities=18%  Similarity=0.208  Sum_probs=153.2

Q ss_pred             HHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 010976          118 MELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEAT  197 (496)
Q Consensus       118 ~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al  197 (496)
                      ..++.+.+...+..+.+.++++.|+.+|++++.-.-.        ..++..+..              .+++++..+...
T Consensus       294 ~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~--------------~Ek~~k~~e~~a  351 (539)
T KOG0548|consen  294 YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKE--------------AEKALKEAERKA  351 (539)
T ss_pred             HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHH--------------HHHHHHHHHHHH
Confidence            3445566666667788889999999999998776543        566667777              999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHH
Q 010976          198 RLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRT  277 (496)
Q Consensus       198 ~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~  277 (496)
                      -++|.-+.--..-|+.++.    .|+|..|+       ..|.+||..+|+++.+|.|+|.||.++|.+          ..
T Consensus       352 ~~~pe~A~e~r~kGne~Fk----~gdy~~Av-------~~YteAIkr~P~Da~lYsNRAac~~kL~~~----------~~  410 (539)
T KOG0548|consen  352 YINPEKAEEEREKGNEAFK----KGDYPEAV-------KHYTEAIKRDPEDARLYSNRAACYLKLGEY----------PE  410 (539)
T ss_pred             hhChhHHHHHHHHHHHHHh----ccCHHHHH-------HHHHHHHhcCCchhHHHHHHHHHHHHHhhH----------HH
Confidence            9999998888888999999    99999999       899999999999999999999999999999          99


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Q 010976          278 AISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL  352 (496)
Q Consensus       278 Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al  352 (496)
                      |+...+.+++++|++..+|..-|.++..+.+                   |..|...|.++++++|++..+...+
T Consensus       411 aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~-------------------ydkAleay~eale~dp~~~e~~~~~  466 (539)
T KOG0548|consen  411 ALKDAKKCIELDPNFIKAYLRKGAALRAMKE-------------------YDKALEAYQEALELDPSNAEAIDGY  466 (539)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHhcCchhHHHHHHH
Confidence            9999999999999999999999999999999                   9999999999999999988554443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=99.38  E-value=3.3e-12  Score=113.04  Aligned_cols=121  Identities=27%  Similarity=0.398  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          229 ELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       229 ~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                      -.|++|.+.++.....||.+++.++++|.+|.++.++....+....+++|+..|++||.++|+...+++++|.+|..++.
T Consensus         5 ~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen    5 LFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            45777889999999999999999999999999999997777777899999999999999999999999999999999996


Q ss_pred             hHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhhhc
Q 010976          309 DTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRS  357 (496)
Q Consensus       309 ~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~~~~  357 (496)
                      ...        ......++|..|..||++|...+|++..|+.+|.+..+
T Consensus        85 l~~--------d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k  125 (186)
T PF06552_consen   85 LTP--------DTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK  125 (186)
T ss_dssp             H-----------HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred             hcC--------ChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence            321        11123457999999999999999999999999999865

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=6.6e-12  Score=123.16  Aligned_cols=162  Identities=17%  Similarity=0.214  Sum_probs=147.6

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHH---
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD---  205 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~---  205 (496)
                      .+++..+|++++|+..--..+++++.+.++++.+|.+++...+              .+.|+.+|+++|.++|++..   
T Consensus       176 a~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~--------------~~ka~~hf~qal~ldpdh~~sk~  241 (486)
T KOG0550|consen  176 AECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDN--------------ADKAINHFQQALRLDPDHQKSKS  241 (486)
T ss_pred             hhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccc--------------hHHHHHHHhhhhccChhhhhHHh
Confidence            4566678999999999999999999999999999999999999              99999999999999999764   


Q ss_pred             ---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCcchHHHhh
Q 010976          206 ---------AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS----PQALNNWGLALQELSAIVPAREKQ  272 (496)
Q Consensus       206 ---------a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~g~~~~A~~~~  272 (496)
                               .+...|+-.+.    .|++.+|.       ++|..+|.++|++    +..|.|++.+...+|+.       
T Consensus       242 ~~~~~k~le~~k~~gN~~fk----~G~y~~A~-------E~Yteal~idP~n~~~naklY~nra~v~~rLgrl-------  303 (486)
T KOG0550|consen  242 ASMMPKKLEVKKERGNDAFK----NGNYRKAY-------ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRL-------  303 (486)
T ss_pred             HhhhHHHHHHHHhhhhhHhh----ccchhHHH-------HHHHHhhcCCccccchhHHHHHHhHhhhcccCCc-------
Confidence                     35566666677    88888888       8999999999985    56799999999999999       


Q ss_pred             hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976          273 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  344 (496)
Q Consensus       273 ~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~  344 (496)
                         .+|+..++.|+++++....++...|.|+..+++                   |..|.++|+++.++.-+
T Consensus       304 ---~eaisdc~~Al~iD~syikall~ra~c~l~le~-------------------~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  304 ---REAISDCNEALKIDSSYIKALLRRANCHLALEK-------------------WEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             ---hhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHhhccc
Confidence               999999999999999999999999999999999                   89999999999988776

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.36  E-value=4.9e-11  Score=127.74  Aligned_cols=197  Identities=12%  Similarity=0.064  Sum_probs=112.2

Q ss_pred             hhhcHHHHHHHHHHhhccc-----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 010976          110 LAEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST  178 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~l~~~-----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~  178 (496)
                      ..++|..|+.+|..++...           +.|+.++++.+.|+..|.++++++|.+..++..||.+-....+.      
T Consensus       176 nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~------  249 (1018)
T KOG2002|consen  176 NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDS------  249 (1018)
T ss_pred             ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccch------
Confidence            3456666666666655544           34455666777777777777777777777777766666555441      


Q ss_pred             CcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH----------------------------
Q 010976          179 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL----------------------------  230 (496)
Q Consensus       179 ~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~----------------------------  230 (496)
                           ..+..++..+.++...+|+++.++..|+..++.    .|+|..+...                            
T Consensus       250 -----~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~  320 (1018)
T KOG2002|consen  250 -----DSYKKGVQLLQRAYKENNENPVALNHLANHFYF----KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ  320 (1018)
T ss_pred             -----HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Confidence                 225556666666666666666665555555555    4444444322                            


Q ss_pred             --HHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976          231 --WKQATKNYEKAVQLNWNS-PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  307 (496)
Q Consensus       231 --~~~A~~~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g  307 (496)
                        |++|..+|.++++.++++ .-.++.+|.+|...|++          +.|+.+|++++...|++.+...-||.+|...+
T Consensus       321 Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dl----------e~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~  390 (1018)
T KOG2002|consen  321 GDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDL----------EESKFCFEKVLKQLPNNYETMKILGCLYAHSA  390 (1018)
T ss_pred             ccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchH----------HHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence              223335555555555554 44455555555555555          66666666666666666666666666665554


Q ss_pred             hhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          308 EDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       308 ~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                      +.               .+..+.+..+..++++..|.+.
T Consensus       391 ~~---------------~~~~d~a~~~l~K~~~~~~~d~  414 (1018)
T KOG2002|consen  391 KK---------------QEKRDKASNVLGKVLEQTPVDS  414 (1018)
T ss_pred             hh---------------hHHHHHHHHHHHHHHhcccccH
Confidence            10               1113566666666666666555

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=1.9e-11  Score=124.17  Aligned_cols=179  Identities=16%  Similarity=0.207  Sum_probs=136.4

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010976          131 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  210 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~l  210 (496)
                      +++..|+..+=...-.+.+...|+.+-.|+..|..|...|+              +.+|..+|.|+..++|....+|..+
T Consensus       287 ~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k--------------~seARry~SKat~lD~~fgpaWl~f  352 (611)
T KOG1173|consen  287 CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGK--------------YSEARRYFSKATTLDPTFGPAWLAF  352 (611)
T ss_pred             HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC--------------cHHHHHHHHHHhhcCccccHHHHHH
Confidence            44555555555555556666666666666666666666666              6666666666666666666666666


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHH---------------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 010976          211 AIAISDRAKMRGRTKEAEELWKQ---------------------------ATKNYEKAVQLNWNSPQALNNWGLALQELS  263 (496)
Q Consensus       211 g~~~~~~~~~~g~~~eA~~~~~~---------------------------A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g  263 (496)
                      |..+..    .|..++|+.+|..                           |-..|.+|+.+.|.++-.++.+|.+.+..+
T Consensus       353 ghsfa~----e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~  428 (611)
T KOG1173|consen  353 GHSFAG----EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYE  428 (611)
T ss_pred             hHHhhh----cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHh
Confidence            666666    6666666655522                           558999999999999999999999999999


Q ss_pred             CcchHHHhhhhHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHH
Q 010976          264 AIVPAREKQTIVRTAISKFRAAIQLQ-------FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIA  336 (496)
Q Consensus       264 ~~~~A~~~~~~~~~Ai~~~~~Al~l~-------P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~  336 (496)
                      .+          .+|+.+|+.++..-       +.....+.|||.++.++++                   |.+|+.+|+
T Consensus       429 ~y----------~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~-------------------~~eAI~~~q  479 (611)
T KOG1173|consen  429 EY----------PEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK-------------------YEEAIDYYQ  479 (611)
T ss_pred             hh----------HHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh-------------------HHHHHHHHH
Confidence            99          99999999999431       2345679999999999999                   999999999


Q ss_pred             HHHhcCCcHHHHHHHHHhhh
Q 010976          337 AAHALKPSYSVYSSALRLVR  356 (496)
Q Consensus       337 ~a~~l~p~~~~y~~al~~~~  356 (496)
                      +++.+.|.+..+..++..+-
T Consensus       480 ~aL~l~~k~~~~~asig~iy  499 (611)
T KOG1173|consen  480 KALLLSPKDASTHASIGYIY  499 (611)
T ss_pred             HHHHcCCCchhHHHHHHHHH
Confidence            99999999997777766543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.36  E-value=2.4e-10  Score=118.18  Aligned_cols=205  Identities=13%  Similarity=0.055  Sum_probs=167.0

Q ss_pred             hhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhcCCCCCCCC
Q 010976          110 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDAL-YNWALVLQESADNVSLDST  178 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~-~~lg~~~~~~~~~~~~~~~  178 (496)
                      ..|+++.|...+.+.....          ......+|+++.|..+|.++.+.+|++..+. ...+.++...|+       
T Consensus        96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~-------  168 (398)
T PRK10747         96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNE-------  168 (398)
T ss_pred             hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCC-------
Confidence            3477777777666554431          2223567999999999999999999986444 344899999999       


Q ss_pred             CcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------
Q 010976          179 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK----------------------  236 (496)
Q Consensus       179 ~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~----------------------  236 (496)
                             +++|++.++++++.+|+++.++..++.+|..    .|++++|++.+.+..+                      
T Consensus       169 -------~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~----~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~  237 (398)
T PRK10747        169 -------NHAARHGVDKLLEVAPRHPEVLRLAEQAYIR----TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD  237 (398)
T ss_pred             -------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence                   9999999999999999999999999999999    9999999966644221                      


Q ss_pred             ---------HHHHHH----hcCCCCHHHHHHHHHHHHHccCcchHHH---------------------hhhhHHHHHHHH
Q 010976          237 ---------NYEKAV----QLNWNSPQALNNWGLALQELSAIVPARE---------------------KQTIVRTAISKF  282 (496)
Q Consensus       237 ---------~~~~Al----~l~P~~~~a~~~lg~~l~~~g~~~~A~~---------------------~~~~~~~Ai~~~  282 (496)
                               .+.+..    ...|+++.++..++..+...|+.++|..                     ..++.++++...
T Consensus       238 ~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~  317 (398)
T PRK10747        238 QAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVL  317 (398)
T ss_pred             HHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHH
Confidence                     111111    2346789999999999999999988822                     348899999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHH
Q 010976          283 RAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSA  351 (496)
Q Consensus       283 ~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~a  351 (496)
                      ++.++.+|+++..+..+|.++...++                   |.+|..+|+++++.+|+...+...
T Consensus       318 e~~lk~~P~~~~l~l~lgrl~~~~~~-------------------~~~A~~~le~al~~~P~~~~~~~L  367 (398)
T PRK10747        318 RQQIKQHGDTPLLWSTLGQLLMKHGE-------------------WQEASLAFRAALKQRPDAYDYAWL  367 (398)
T ss_pred             HHHHhhCCCCHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHhcCCCHHHHHHH
Confidence            99999999999999999999999999                   999999999999999999875543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.35  E-value=3.2e-11  Score=112.61  Aligned_cols=143  Identities=22%  Similarity=0.171  Sum_probs=136.1

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  211 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  211 (496)
                      ++..|+-+.+.....++...+|.+...+..+|...+..|+              |.+|+..++++..++|++.++|..+|
T Consensus        76 ~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~--------------~~~A~~~~rkA~~l~p~d~~~~~~lg  141 (257)
T COG5010          76 LYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGN--------------FGEAVSVLRKAARLAPTDWEAWNLLG  141 (257)
T ss_pred             HHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcc--------------hHHHHHHHHHHhccCCCChhhhhHHH
Confidence            4456888888899999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976          212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  291 (496)
Q Consensus       212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~  291 (496)
                      .+|.+    .|++++|.       ..|.+++++.|+++.+.+|+|..|.-.|++          +.|...+..+....+.
T Consensus       142 aaldq----~Gr~~~Ar-------~ay~qAl~L~~~~p~~~nNlgms~~L~gd~----------~~A~~lll~a~l~~~a  200 (257)
T COG5010         142 AALDQ----LGRFDEAR-------RAYRQALELAPNEPSIANNLGMSLLLRGDL----------EDAETLLLPAYLSPAA  200 (257)
T ss_pred             HHHHH----ccChhHHH-------HHHHHHHHhccCCchhhhhHHHHHHHcCCH----------HHHHHHHHHHHhCCCC
Confidence            99999    99999999       899999999999999999999999999999          9999999999999999


Q ss_pred             CHHHHHHHHHHHHHcchh
Q 010976          292 FHRAIYNLGTVLYGLAED  309 (496)
Q Consensus       292 ~~~a~~~lg~~~~~~g~~  309 (496)
                      +..+..||+.+....|+.
T Consensus       201 d~~v~~NLAl~~~~~g~~  218 (257)
T COG5010         201 DSRVRQNLALVVGLQGDF  218 (257)
T ss_pred             chHHHHHHHHHHhhcCCh
Confidence            999999999999999983

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.35  E-value=6.3e-12  Score=128.13  Aligned_cols=136  Identities=18%  Similarity=0.249  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010976          138 LTFAAKRYANAIERNP--EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS  215 (496)
Q Consensus       138 ~~~Ai~~~~~al~~~P--~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~  215 (496)
                      +..-.+.|-.+...+|  .+++++..||.+|...++              |++|+.+|+.||..+|++...|+.||..+.
T Consensus       410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e--------------fdraiDcf~~AL~v~Pnd~~lWNRLGAtLA  475 (579)
T KOG1125|consen  410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE--------------FDRAVDCFEAALQVKPNDYLLWNRLGATLA  475 (579)
T ss_pred             HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH--------------HHHHHHHHHHHHhcCCchHHHHHHhhHHhc
Confidence            4456678888999999  799999999999999999              999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC----
Q 010976          216 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD----  291 (496)
Q Consensus       216 ~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~----  291 (496)
                      .    ..+..+|+       ..|++|+++.|++..+++|||.++..+|.|          ++|+.+|-.||.+.+.    
T Consensus       476 N----~~~s~EAI-------sAY~rALqLqP~yVR~RyNlgIS~mNlG~y----------kEA~~hlL~AL~mq~ks~~~  534 (579)
T KOG1125|consen  476 N----GNRSEEAI-------SAYNRALQLQPGYVRVRYNLGISCMNLGAY----------KEAVKHLLEALSMQRKSRNH  534 (579)
T ss_pred             C----CcccHHHH-------HHHHHHHhcCCCeeeeehhhhhhhhhhhhH----------HHHHHHHHHHHHhhhccccc
Confidence            9    99999999       899999999999999999999999999999          9999999999998665    


Q ss_pred             ------CHHHHHHHHHHHHHcch
Q 010976          292 ------FHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       292 ------~~~a~~~lg~~~~~~g~  308 (496)
                            +-.+|-.|-.++...++
T Consensus       535 ~~~~~~se~iw~tLR~als~~~~  557 (579)
T KOG1125|consen  535 NKAPMASENIWQTLRLALSAMNR  557 (579)
T ss_pred             ccCCcchHHHHHHHHHHHHHcCC
Confidence                  12577777777777776

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.35  E-value=2e-11  Score=124.04  Aligned_cols=115  Identities=23%  Similarity=0.131  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010976          159 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY  238 (496)
Q Consensus       159 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~  238 (496)
                      +...|..++..|+              |++|+.+|+++++++|+++.+|+++|.+|..    +|++++|+       ..+
T Consensus         5 l~~~a~~a~~~~~--------------~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~----~g~~~eAl-------~~~   59 (356)
T PLN03088          5 LEDKAKEAFVDDD--------------FALAVDLYTQAIDLDPNNAELYADRAQANIK----LGNFTEAV-------ADA   59 (356)
T ss_pred             HHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHH
Confidence            4566888888899              9999999999999999999999999999999    99999999       899


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          239 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       239 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                      ++++.++|+++.+|+++|.+|..+|++          ++|+..|+++++++|++..+...++.|...+..
T Consensus        60 ~~Al~l~P~~~~a~~~lg~~~~~lg~~----------~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         60 NKAIELDPSLAKAYLRKGTACMKLEEY----------QTAKAALEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             HHHHHhCcCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999          999999999999999999999999998776643

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.34  E-value=1.7e-10  Score=110.80  Aligned_cols=211  Identities=12%  Similarity=0.081  Sum_probs=163.6

Q ss_pred             CCCChhhhhhcHHHHHHHHHHhhccch-------------------------hhhHhhccHHHHHHHHHHHHHhCCCCHH
Q 010976          103 QGNTPHQLAEQNNAAMELINSVTGVDE-------------------------EGRSRQRILTFAAKRYANAIERNPEDYD  157 (496)
Q Consensus       103 ~~~~~~~~~~~~~~A~~~~~~~l~~~~-------------------------~~~~~~g~~~~Ai~~~~~al~~~P~~~~  157 (496)
                      .++..+...|+++.|..-|..++....                         ..++..|++..||.+....|++.|-++.
T Consensus       111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~  190 (504)
T KOG0624|consen  111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDAS  190 (504)
T ss_pred             HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhH
Confidence            445556678888888888888887651                         1123348999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 010976          158 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN  237 (496)
Q Consensus       158 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~  237 (496)
                      .+..++.+|...|+              ...||..++.+-++..++.+.+|.++.+++.    .|+...++       ..
T Consensus       191 l~~~Rakc~i~~~e--------------~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~----vgd~~~sL-------~~  245 (504)
T KOG0624|consen  191 LRQARAKCYIAEGE--------------PKKAIHDLKQASKLSQDNTEGHYKISQLLYT----VGDAENSL-------KE  245 (504)
T ss_pred             HHHHHHHHHHhcCc--------------HHHHHHHHHHHHhccccchHHHHHHHHHHHh----hhhHHHHH-------HH
Confidence            99999999999999              9999999999999999999999999999988    88888888       67


Q ss_pred             HHHHHhcCCCCHHHHHHHH------------HHHHHccCcchH----------------------------HHhhhhHHH
Q 010976          238 YEKAVQLNWNSPQALNNWG------------LALQELSAIVPA----------------------------REKQTIVRT  277 (496)
Q Consensus       238 ~~~Al~l~P~~~~a~~~lg------------~~l~~~g~~~~A----------------------------~~~~~~~~~  277 (496)
                      .+.+|.+||++-.++-..-            .-..+.++|-++                            ....+++.+
T Consensus       246 iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e  325 (504)
T KOG0624|consen  246 IRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE  325 (504)
T ss_pred             HHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence            7777777777544432111            111222222222                            124577799


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhhhc
Q 010976          278 AISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRS  357 (496)
Q Consensus       278 Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~~~~  357 (496)
                      ||+.+.++|.++|++..++...+.+|..-..                   |+.|+..|++|.++++++...+..+...++
T Consensus       326 AiqqC~evL~~d~~dv~~l~dRAeA~l~dE~-------------------YD~AI~dye~A~e~n~sn~~~reGle~Akr  386 (504)
T KOG0624|consen  326 AIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM-------------------YDDAIHDYEKALELNESNTRAREGLERAKR  386 (504)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHhhhHH-------------------HHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence            9999999999999999999999998876555                   999999999999999999877666655443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.34  E-value=4.8e-11  Score=114.23  Aligned_cols=150  Identities=20%  Similarity=0.147  Sum_probs=125.6

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHcCCHHHH
Q 010976          151 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DAFYNWAIAISDRAKMRGRTKEA  227 (496)
Q Consensus       151 ~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~---~a~~~lg~~~~~~~~~~g~~~eA  227 (496)
                      .++..++.++.+|..+...|+              +++|+..|++++..+|+++   .+++.+|.++..    .|++++|
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~--------------~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~----~~~~~~A   89 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGD--------------YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK----SGDYAEA   89 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh----cCCHHHH
Confidence            445678999999999999999              9999999999999999876   688999999999    9999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHH--------
Q 010976          228 EELWKQATKNYEKAVQLNWNSPQ---ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI--------  296 (496)
Q Consensus       228 ~~~~~~A~~~~~~Al~l~P~~~~---a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~--------  296 (496)
                      +       ..|+++++.+|+++.   +++.+|.++.....  .+....|++++|+..|++++..+|++..++        
T Consensus        90 ~-------~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~--~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~  160 (235)
T TIGR03302        90 I-------AAADRFIRLHPNHPDADYAYYLRGLSNYNQID--RVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY  160 (235)
T ss_pred             H-------HHHHHHHHHCcCCCchHHHHHHHHHHHHHhcc--cccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH
Confidence            9       899999999998776   79999999987611  112233445999999999999999986543        


Q ss_pred             ---------HHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          297 ---------YNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       297 ---------~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                               ..+|.+|+..|+                   +..|...|++++...|+.+
T Consensus       161 ~~~~~~~~~~~~a~~~~~~g~-------------------~~~A~~~~~~al~~~p~~~  200 (235)
T TIGR03302       161 LRNRLAGKELYVARFYLKRGA-------------------YVAAINRFETVVENYPDTP  200 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHcCC-------------------hHHHHHHHHHHHHHCCCCc
Confidence                     356677777777                   8899999999999887754

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.34  E-value=3.4e-10  Score=104.93  Aligned_cols=168  Identities=16%  Similarity=0.075  Sum_probs=146.8

Q ss_pred             hhhcHHHHHHHHHHhhccch----------hhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 010976          110 LAEQNNAAMELINSVTGVDE----------EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS  179 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~l~~~~----------~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~  179 (496)
                      ..++.+.|..+++.......          .-+-..|.+++|+++|+..++-+|.+..++...-.+...+|+        
T Consensus        64 d~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK--------  135 (289)
T KOG3060|consen   64 DTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK--------  135 (289)
T ss_pred             HhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC--------
Confidence            45777788888877665552          223346999999999999999999999999988888899999        


Q ss_pred             cchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010976          180 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL  259 (496)
Q Consensus       180 ~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  259 (496)
                            --+||+.+..-++..+++.++|..++.+|..    .|+|.+|.       -||++.+-++|.++..+..+|.++
T Consensus       136 ------~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~----~~~f~kA~-------fClEE~ll~~P~n~l~f~rlae~~  198 (289)
T KOG3060|consen  136 ------NLEAIKELNEYLDKFMNDQEAWHELAEIYLS----EGDFEKAA-------FCLEELLLIQPFNPLYFQRLAEVL  198 (289)
T ss_pred             ------cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----HhHHHHHH-------HHHHHHHHcCCCcHHHHHHHHHHH
Confidence                  7899999999999999999999999999999    88888887       899999999999999999999999


Q ss_pred             HHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010976          260 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED  309 (496)
Q Consensus       260 ~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~  309 (496)
                      +-+|..       .++.-|..+|.++++++|.+..+++.+-.+...+.+.
T Consensus       199 Yt~gg~-------eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~  241 (289)
T KOG3060|consen  199 YTQGGA-------ENLELARKYYERALKLNPKNLRALFGIYLCGSALAQI  241 (289)
T ss_pred             HHHhhH-------HHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHH
Confidence            988875       6778999999999999999999999887777666643

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.33  E-value=1.9e-10  Score=123.36  Aligned_cols=225  Identities=16%  Similarity=0.108  Sum_probs=156.4

Q ss_pred             ChhhhhhcHHHHHHHHHHhhccc--------------------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976          106 TPHQLAEQNNAAMELINSVTGVD--------------------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALV  165 (496)
Q Consensus       106 ~~~~~~~~~~~A~~~~~~~l~~~--------------------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~  165 (496)
                      ..+...|.+..|...+.++++..                    +.++-..++++.|...|...++.+|.+.+++..+|..
T Consensus       460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~m  539 (1018)
T KOG2002|consen  460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCM  539 (1018)
T ss_pred             HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHH
Confidence            33446788888888888888772                    1122334788888899999999999999999999977


Q ss_pred             HHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----------------------------
Q 010976          166 LQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDR----------------------------  217 (496)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~----------------------------  217 (496)
                      ....+.              ..+|...+..++..+..++.++..+|.+|...                            
T Consensus       540 a~~k~~--------------~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia  605 (1018)
T KOG2002|consen  540 ARDKNN--------------LYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA  605 (1018)
T ss_pred             HHhccC--------------cHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence            777888              99999999999999999999999888777663                            


Q ss_pred             ---------HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh
Q 010976          218 ---------AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  288 (496)
Q Consensus       218 ---------~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l  288 (496)
                               +....+...+...+.+|+..|.++|..+|.|..+-+.+|.++...|++          .+|+..|.++.+-
T Consensus       606 LGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~----------~~A~dIFsqVrEa  675 (1018)
T KOG2002|consen  606 LGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRF----------SEARDIFSQVREA  675 (1018)
T ss_pred             hhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCc----------hHHHHHHHHHHHH
Confidence                     001112244556678899999999999999999999999999999999          5555555555444


Q ss_pred             cCCCHHHHHHHHHHHHHcchhHHhccCCCC-----CCCCCc------------HHHHHHHHHHHHHHHhcCCcHHHHHHH
Q 010976          289 QFDFHRAIYNLGTVLYGLAEDTLRTGGTVN-----PREVSP------------NELYSQSAIYIAAAHALKPSYSVYSSA  351 (496)
Q Consensus       289 ~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~-----~~~~~~------------~~~~~~A~~~~~~a~~l~p~~~~y~~a  351 (496)
                      --++..+|.|+|.||..+|+...+..-.-.     ....++            ...|.++..+...|..+.|.++.....
T Consensus       676 ~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN  755 (1018)
T KOG2002|consen  676 TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFN  755 (1018)
T ss_pred             HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhH
Confidence            444445555555555555543322211000     000000            012677778888888888887754444


Q ss_pred             HHh
Q 010976          352 LRL  354 (496)
Q Consensus       352 l~~  354 (496)
                      +.+
T Consensus       756 ~a~  758 (1018)
T KOG2002|consen  756 LAL  758 (1018)
T ss_pred             HHH
Confidence            433

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.33  E-value=2.8e-10  Score=117.74  Aligned_cols=185  Identities=13%  Similarity=0.054  Sum_probs=154.6

Q ss_pred             hhhhcHHHHHHHHHHhhccch-----------hhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 010976          109 QLAEQNNAAMELINSVTGVDE-----------EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS  177 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~l~~~~-----------~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~  177 (496)
                      .+.|+++.|..++.++.....           ..+...|++++|+..++++++.+|+++.++..++.+|...|+      
T Consensus       129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd------  202 (398)
T PRK10747        129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA------  202 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh------
Confidence            567889999999988877542           233457999999999999999999999999999999999999      


Q ss_pred             CCcchhhhHHHHHHHHHHHHHh------------------------------------------CCCCHHHHHHHHHHHH
Q 010976          178 TSPSKDALLEEACKKYDEATRL------------------------------------------CPTLHDAFYNWAIAIS  215 (496)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~Al~l------------------------------------------~P~~~~a~~~lg~~~~  215 (496)
                              +++|++.+.+..+.                                          .|+++.++..++..+.
T Consensus       203 --------w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~  274 (398)
T PRK10747        203 --------WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLI  274 (398)
T ss_pred             --------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHH
Confidence                    77777555554432                                          3446666677777777


Q ss_pred             HHHHHcCCHHHHHHHHH------------------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHh
Q 010976          216 DRAKMRGRTKEAEELWK------------------------QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREK  271 (496)
Q Consensus       216 ~~~~~~g~~~eA~~~~~------------------------~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~  271 (496)
                      .    .|+.++|.+.++                        ++++.+++.++.+|+++..+..+|.++...+++      
T Consensus       275 ~----~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~------  344 (398)
T PRK10747        275 E----CDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEW------  344 (398)
T ss_pred             H----CCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH------
Confidence            7    999999987763                        477888889999999999999999999999999      


Q ss_pred             hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhc
Q 010976          272 QTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL  341 (496)
Q Consensus       272 ~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l  341 (496)
                          ++|..+|++++++.|++.. +..++.++..+|+                   ..+|..+|++++.+
T Consensus       345 ----~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~-------------------~~~A~~~~~~~l~~  390 (398)
T PRK10747        345 ----QEASLAFRAALKQRPDAYD-YAWLADALDRLHK-------------------PEEAAAMRRDGLML  390 (398)
T ss_pred             ----HHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCC-------------------HHHHHHHHHHHHhh
Confidence                9999999999999999654 6689999999998                   67888888888765

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.33  E-value=2.4e-10  Score=105.88  Aligned_cols=162  Identities=17%  Similarity=0.079  Sum_probs=149.6

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  214 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~  214 (496)
                      .|+.+-|..++++.-...|+........|..+...|.              +++|+++|+..++-||.|..++...-.+.
T Consensus        65 ~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~--------------~~~A~e~y~~lL~ddpt~~v~~KRKlAil  130 (289)
T KOG3060|consen   65 TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGN--------------YKEAIEYYESLLEDDPTDTVIRKRKLAIL  130 (289)
T ss_pred             hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhc--------------hhhHHHHHHHHhccCcchhHHHHHHHHHH
Confidence            5888999999999999999999999999999999999              99999999999999999999999887778


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHH
Q 010976          215 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR  294 (496)
Q Consensus       215 ~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~  294 (496)
                      ..    +|+..+|+       +.+..-+..-+++.++|..++.+|...|++          ++|.-+|++.+-++|.++.
T Consensus       131 ka----~GK~l~aI-------k~ln~YL~~F~~D~EAW~eLaeiY~~~~~f----------~kA~fClEE~ll~~P~n~l  189 (289)
T KOG3060|consen  131 KA----QGKNLEAI-------KELNEYLDKFMNDQEAWHELAEIYLSEGDF----------EKAAFCLEELLLIQPFNPL  189 (289)
T ss_pred             HH----cCCcHHHH-------HHHHHHHHHhcCcHHHHHHHHHHHHhHhHH----------HHHHHHHHHHHHcCCCcHH
Confidence            77    99999999       777888888899999999999999999999          9999999999999999999


Q ss_pred             HHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHH
Q 010976          295 AIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV  347 (496)
Q Consensus       295 a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~  347 (496)
                      .+..+|.+++.+|-                .+.+..+..||+++++++|.+.+
T Consensus       190 ~f~rlae~~Yt~gg----------------~eN~~~arkyy~~alkl~~~~~r  226 (289)
T KOG3060|consen  190 YFQRLAEVLYTQGG----------------AENLELARKYYERALKLNPKNLR  226 (289)
T ss_pred             HHHHHHHHHHHHhh----------------HHHHHHHHHHHHHHHHhChHhHH
Confidence            99999999999984                23378899999999999996553

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.32  E-value=1.8e-10  Score=120.87  Aligned_cols=103  Identities=18%  Similarity=0.184  Sum_probs=83.6

Q ss_pred             hhhhcHHHHHHHHHHhhccc--------hh-------hh-----------HhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010976          109 QLAEQNNAAMELINSVTGVD--------EE-------GR-----------SRQRILTFAAKRYANAIERNPEDYDALYNW  162 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~l~~~--------~~-------~~-----------~~~g~~~~Ai~~~~~al~~~P~~~~a~~~l  162 (496)
                      ...+..++++++..+++...        +.       +|           .+.....+++..++++++.+|.|+.+.+.+
T Consensus       405 e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~l  484 (799)
T KOG4162|consen  405 ERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYL  484 (799)
T ss_pred             hchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Confidence            45677788888888887733        11       11           122456789999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 010976          163 ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP-TLHDAFYNWAIAISDRAKMRGRTKEAEE  229 (496)
Q Consensus       163 g~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~~~~~g~~~eA~~  229 (496)
                      +.-|..+++              ++.|....++++++++ +++.+|..|+.++..    .+++.+|+.
T Consensus       485 alq~A~~R~--------------l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa----~kr~~~Al~  534 (799)
T KOG4162|consen  485 ALQYAEQRQ--------------LTSALDYAREALALNRGDSAKAWHLLALVLSA----QKRLKEALD  534 (799)
T ss_pred             HHHHHHHHh--------------HHHHHHHHHHHHHhcCCccHHHHHHHHHHHhh----hhhhHHHHH
Confidence            999999999              9999999999999954 578899999999988    888888773

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.31  E-value=3.9e-11  Score=121.97  Aligned_cols=108  Identities=17%  Similarity=0.159  Sum_probs=102.0

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010976          131 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  210 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~l  210 (496)
                      ..+..|+|++|+.+|+++|+++|+++.+|+++|.+|..+|+              +++|+..+++++.++|+++.+|+++
T Consensus        11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~--------------~~eAl~~~~~Al~l~P~~~~a~~~l   76 (356)
T PLN03088         11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGN--------------FTEAVADANKAIELDPSLAKAYLRK   76 (356)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            35567999999999999999999999999999999999999              9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 010976          211 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS  263 (496)
Q Consensus       211 g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g  263 (496)
                      |.+|..    +|++++|+       ..|+++++++|++..++..++.+...+.
T Consensus        77 g~~~~~----lg~~~eA~-------~~~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         77 GTACMK----LEEYQTAK-------AALEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             HHHHHH----hCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999    99999999       8999999999999999999988876663

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.30  E-value=3.5e-11  Score=105.30  Aligned_cols=111  Identities=13%  Similarity=0.046  Sum_probs=101.1

Q ss_pred             HHhC-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhH
Q 010976          197 TRLC-PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV  275 (496)
Q Consensus       197 l~l~-P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~  275 (496)
                      ..+. ++.-+..|.+|..+..    .|++++|.       ..|+-...++|.+...|++||.++..+|++          
T Consensus        27 ~~~~~~~~l~~lY~~A~~ly~----~G~l~~A~-------~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~----------   85 (157)
T PRK15363         27 LDDDVTQPLNTLYRYAMQLME----VKEFAGAA-------RLFQLLTIYDAWSFDYWFRLGECCQAQKHW----------   85 (157)
T ss_pred             HCCChHHHHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCcccHHHHHHHHHHHHHHhhH----------
Confidence            3456 7788899999999999    99999999       899999999999999999999999999999          


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHH
Q 010976          276 RTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV  347 (496)
Q Consensus       276 ~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~  347 (496)
                      .+|+..|.+|+.++|+++.+++|+|.|++..|+                   ...|..+|+.++..-...+.
T Consensus        86 ~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~-------------------~~~A~~aF~~Ai~~~~~~~~  138 (157)
T PRK15363         86 GEAIYAYGRAAQIKIDAPQAPWAAAECYLACDN-------------------VCYAIKALKAVVRICGEVSE  138 (157)
T ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHhccChh
Confidence            999999999999999999999999999999999                   67888888888887644443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.30  E-value=1.2e-10  Score=129.02  Aligned_cols=159  Identities=9%  Similarity=0.039  Sum_probs=108.5

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976          133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  212 (496)
Q Consensus       133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  212 (496)
                      +++|+++.|+..|+++++.+|+++.+.+.+..++...|+              +++|+.++++++.-.|.....+..+|.
T Consensus        45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~--------------~~~A~~~~eka~~p~n~~~~~llalA~  110 (822)
T PRK14574         45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGR--------------DQEVIDVYERYQSSMNISSRGLASAAR  110 (822)
T ss_pred             HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCC--------------cHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence            456777778888888887777775444477777777777              777777777777333334444444466


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976          213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  292 (496)
Q Consensus       213 ~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~  292 (496)
                      ++..    +|++++|+       +.|+++++.+|+++.++..++.++...++.          ++|+..+++++..+|.+
T Consensus       111 ly~~----~gdyd~Ai-------ely~kaL~~dP~n~~~l~gLa~~y~~~~q~----------~eAl~~l~~l~~~dp~~  169 (822)
T PRK14574        111 AYRN----EKRWDQAL-------ALWQSSLKKDPTNPDLISGMIMTQADAGRG----------GVVLKQATELAERDPTV  169 (822)
T ss_pred             HHHH----cCCHHHHH-------HHHHHHHhhCCCCHHHHHHHHHHHhhcCCH----------HHHHHHHHHhcccCcch
Confidence            7777    77777777       777777777777777777777777777777          77777777777777774


Q ss_pred             HHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          293 HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       293 ~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                      ... ..++.++...++                   +..|+..|+++++.+|++.
T Consensus       170 ~~~-l~layL~~~~~~-------------------~~~AL~~~ekll~~~P~n~  203 (822)
T PRK14574        170 QNY-MTLSYLNRATDR-------------------NYDALQASSEAVRLAPTSE  203 (822)
T ss_pred             HHH-HHHHHHHHhcch-------------------HHHHHHHHHHHHHhCCCCH
Confidence            443 333333333333                   4457777777777777766

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.29  E-value=1.5e-10  Score=117.66  Aligned_cols=162  Identities=14%  Similarity=0.054  Sum_probs=135.1

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010976          131 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  210 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~l  210 (496)
                      .....|++++|+..++++++.+|++..++.. +..+...++.          .+....+.+.+......+|....++..+
T Consensus        52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~  120 (355)
T cd05804          52 SAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDF----------SGMRDHVARVLPLWAPENPDYWYLLGML  120 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhccc----------ccCchhHHHHHhccCcCCCCcHHHHHHH
Confidence            3456799999999999999999999988887 7777776651          0114444444444446678888888999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcC
Q 010976          211 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF  290 (496)
Q Consensus       211 g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P  290 (496)
                      |.++..    +|++++|+       ..++++++++|+++.++..+|.++...|++          ++|+..+++++...|
T Consensus       121 a~~~~~----~G~~~~A~-------~~~~~al~~~p~~~~~~~~la~i~~~~g~~----------~eA~~~l~~~l~~~~  179 (355)
T cd05804         121 AFGLEE----AGQYDRAE-------EAARRALELNPDDAWAVHAVAHVLEMQGRF----------KEGIAFMESWRDTWD  179 (355)
T ss_pred             HHHHHH----cCCHHHHH-------HHHHHHHhhCCCCcHHHHHHHHHHHHcCCH----------HHHHHHHHhhhhccC
Confidence            999999    99999999       899999999999999999999999999999          999999999999987


Q ss_pred             CCH----HHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 010976          291 DFH----RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP  343 (496)
Q Consensus       291 ~~~----~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p  343 (496)
                      ..+    ..+..++.++...|+                   +.+|..+|++++...|
T Consensus       180 ~~~~~~~~~~~~la~~~~~~G~-------------------~~~A~~~~~~~~~~~~  217 (355)
T cd05804         180 CSSMLRGHNWWHLALFYLERGD-------------------YEAALAIYDTHIAPSA  217 (355)
T ss_pred             CCcchhHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHhcccc
Confidence            443    346689999999999                   8899999999877666

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=99.29  E-value=1e-10  Score=103.68  Aligned_cols=115  Identities=31%  Similarity=0.425  Sum_probs=91.5

Q ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 010976          137 ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISD  216 (496)
Q Consensus       137 ~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~  216 (496)
                      -|+.|.+.++.....||.++++++++|.++..+.+...    .......+++|+.-|++||.++|+..+++++||++|..
T Consensus         6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~----g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts   81 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQ----GPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS   81 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccC----cchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999876100    01223568999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010976          217 RAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW  255 (496)
Q Consensus       217 ~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~l  255 (496)
                      ++++..+..+|.++|++|..+|++|+..+|+|......|
T Consensus        82 ~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL  120 (186)
T PF06552_consen   82 LAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL  120 (186)
T ss_dssp             HHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred             HHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            999999999999999999999999999999987654444

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>TIGR00540 hemY_coli hemY protein

Probab=99.27  E-value=9.5e-10  Score=114.26  Aligned_cols=199  Identities=16%  Similarity=0.048  Sum_probs=152.1

Q ss_pred             hhhhhcHHHHHHHHHHhhccch-----------hhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC---
Q 010976          108 HQLAEQNNAAMELINSVTGVDE-----------EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNV---  173 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~~-----------~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~---  173 (496)
                      ....|+++.|..++.++.....           ..+...|+++.|...+++.++.+|+++.++..++.++...|+..   
T Consensus       128 a~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~  207 (409)
T TIGR00540       128 AQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALD  207 (409)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence            3567899999999988755431           22334699999999999999999999999999999999999831   


Q ss_pred             ------C-C---CCCCc------chhhhH-----HHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHcCCHHHHH
Q 010976          174 ------S-L---DSTSP------SKDALL-----EEACKKYDEATRLCP----TLHDAFYNWAIAISDRAKMRGRTKEAE  228 (496)
Q Consensus       174 ------~-~---~~~~~------~~~~~~-----~~A~~~~~~Al~l~P----~~~~a~~~lg~~~~~~~~~~g~~~eA~  228 (496)
                            . .   ++...      ...+.+     +++.+.+.++....|    ++..++..++..+..    .|++++|+
T Consensus       208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~----~g~~~~A~  283 (409)
T TIGR00540       208 DIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID----CDDHDSAQ  283 (409)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH----CCChHHHH
Confidence                  0 0   00000      011112     222336666666666    478888888888888    99999998


Q ss_pred             HHHHH-----------------------------HHHHHHHHHhcCCCCH--HHHHHHHHHHHHccCcchHHHhhhhHHH
Q 010976          229 ELWKQ-----------------------------ATKNYEKAVQLNWNSP--QALNNWGLALQELSAIVPAREKQTIVRT  277 (496)
Q Consensus       229 ~~~~~-----------------------------A~~~~~~Al~l~P~~~--~a~~~lg~~l~~~g~~~~A~~~~~~~~~  277 (496)
                      +.+++                             +++.++++++.+|+++  ..+..+|.++.+.|++          ++
T Consensus       284 ~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~----------~~  353 (409)
T TIGR00540       284 EIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEF----------IE  353 (409)
T ss_pred             HHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccH----------HH
Confidence            76643                             5667888889999999  8899999999999999          99


Q ss_pred             HHHHHH--HHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHh
Q 010976          278 AISKFR--AAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHA  340 (496)
Q Consensus       278 Ai~~~~--~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~  340 (496)
                      |..+|+  ++++.+|+... +..+|.++..+|+                   ..+|..+|++++.
T Consensus       354 A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~-------------------~~~A~~~~~~~l~  398 (409)
T TIGR00540       354 AADAFKNVAACKEQLDAND-LAMAADAFDQAGD-------------------KAEAAAMRQDSLG  398 (409)
T ss_pred             HHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCC-------------------HHHHHHHHHHHHH
Confidence            999999  68888898665 5599999999998                   6677777777654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.26  E-value=8.1e-10  Score=109.41  Aligned_cols=195  Identities=15%  Similarity=0.084  Sum_probs=159.4

Q ss_pred             hcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcc
Q 010976          112 EQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPS  181 (496)
Q Consensus       112 ~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~  181 (496)
                      .++..|..+...++..+          +...+..|++++|.+.|++++..+....++++++|..+..+|+          
T Consensus       470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~----------  539 (840)
T KOG2003|consen  470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGN----------  539 (840)
T ss_pred             cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcC----------
Confidence            34555555555555544          2223456899999999999999998899999999999999999          


Q ss_pred             hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010976          182 KDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE  261 (496)
Q Consensus       182 ~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~  261 (496)
                          +++|+.+|-+.-.+--+++.+++.++.+|..    +.+..+|+       ++|.++..+-|+++..+..||.+|-+
T Consensus       540 ----ldeald~f~klh~il~nn~evl~qianiye~----led~aqai-------e~~~q~~slip~dp~ilskl~dlydq  604 (840)
T KOG2003|consen  540 ----LDEALDCFLKLHAILLNNAEVLVQIANIYEL----LEDPAQAI-------ELLMQANSLIPNDPAILSKLADLYDQ  604 (840)
T ss_pred             ----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----hhCHHHHH-------HHHHHhcccCCCCHHHHHHHHHHhhc
Confidence                9999999998888888899999999999988    89998888       78888888899999999999999999


Q ss_pred             ccCcchHHH------------------------hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCC
Q 010976          262 LSAIVPARE------------------------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTV  317 (496)
Q Consensus       262 ~g~~~~A~~------------------------~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~  317 (496)
                      .|+-.+|.+                        ...-.++||.+|++|--+.|+...-...++.|+.+.|+         
T Consensus       605 egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn---------  675 (840)
T KOG2003|consen  605 EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN---------  675 (840)
T ss_pred             ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc---------
Confidence            888877622                        34456889999999988999988888888999999998         


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHH
Q 010976          318 NPREVSPNELYSQSAIYIAAAHALKPSYSVYSS  350 (496)
Q Consensus       318 ~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~  350 (496)
                                |+.|.+.|+..++.-|.+....+
T Consensus       676 ----------yqka~d~yk~~hrkfpedldclk  698 (840)
T KOG2003|consen  676 ----------YQKAFDLYKDIHRKFPEDLDCLK  698 (840)
T ss_pred             ----------HHHHHHHHHHHHHhCccchHHHH
Confidence                      88888888888888887764433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.26  E-value=3.1e-10  Score=112.33  Aligned_cols=204  Identities=17%  Similarity=0.125  Sum_probs=167.3

Q ss_pred             hhhhhcHHHHHHHHHHhhccc---------hh--hhHhh--ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCC
Q 010976          108 HQLAEQNNAAMELINSVTGVD---------EE--GRSRQ--RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS  174 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~---------~~--~~~~~--g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~  174 (496)
                      +...++++.|++.+.-.-..+         +.  .++.+  .++..|-.+...++.++--++.++.+.|++-+..|+   
T Consensus       429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd---  505 (840)
T KOG2003|consen  429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGD---  505 (840)
T ss_pred             HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCc---
Confidence            345678888887765333222         11  12232  589999999999999999999999999999999999   


Q ss_pred             CCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010976          175 LDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN  254 (496)
Q Consensus       175 ~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~  254 (496)
                                 +++|.+.|+.||.-+.....+++|+|..+..    +|+.++|+       ++|-+.-.+--++.+.++.
T Consensus       506 -----------~dka~~~ykeal~ndasc~ealfniglt~e~----~~~ldeal-------d~f~klh~il~nn~evl~q  563 (840)
T KOG2003|consen  506 -----------LDKAAEFYKEALNNDASCTEALFNIGLTAEA----LGNLDEAL-------DCFLKLHAILLNNAEVLVQ  563 (840)
T ss_pred             -----------HHHHHHHHHHHHcCchHHHHHHHHhcccHHH----hcCHHHHH-------HHHHHHHHHHHhhHHHHHH
Confidence                       9999999999999999999999999999999    99999999       6777666666679999999


Q ss_pred             HHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCC-----CCC------
Q 010976          255 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPR-----EVS------  323 (496)
Q Consensus       255 lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~-----~~~------  323 (496)
                      ++.+|..+.+.          .+||++|-++..+-|+++.++..||.+|-..|+...+-.....+-     .+.      
T Consensus       564 ianiye~led~----------aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~  633 (840)
T KOG2003|consen  564 IANIYELLEDP----------AQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA  633 (840)
T ss_pred             HHHHHHHhhCH----------HHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHH
Confidence            99999999999          999999999999999999999999999999997544432221111     111      


Q ss_pred             ----cHHHHHHHHHHHHHHHhcCCcHH
Q 010976          324 ----PNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       324 ----~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                          ...++..++.||++|--+.|+..
T Consensus       634 ayyidtqf~ekai~y~ekaaliqp~~~  660 (840)
T KOG2003|consen  634 AYYIDTQFSEKAINYFEKAALIQPNQS  660 (840)
T ss_pred             HHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence                11256889999999999999876

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.24  E-value=7.1e-10  Score=106.02  Aligned_cols=180  Identities=11%  Similarity=0.042  Sum_probs=148.9

Q ss_pred             ccCCCChhhhhhcHHHHHHHHHHhhccc--------------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976          101 ASQGNTPHQLAEQNNAAMELINSVTGVD--------------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVL  166 (496)
Q Consensus       101 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~--------------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~  166 (496)
                      ....+..|+..|+.|.|+.+-+..+...              ++.+...|-++.|...|...+...-.-..++..|-.+|
T Consensus        72 ~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IY  151 (389)
T COG2956          72 HLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIY  151 (389)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence            4456777889999999998877655543              44566679999999999999876666678999999999


Q ss_pred             HHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 010976          167 QESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW  246 (496)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P  246 (496)
                      ....+              +++||+.-++..++.+....  ..++..|..    +.+-..+...+++|+..+.+|++.||
T Consensus       152 Q~tre--------------W~KAId~A~~L~k~~~q~~~--~eIAqfyCE----LAq~~~~~~~~d~A~~~l~kAlqa~~  211 (389)
T COG2956         152 QATRE--------------WEKAIDVAERLVKLGGQTYR--VEIAQFYCE----LAQQALASSDVDRARELLKKALQADK  211 (389)
T ss_pred             HHhhH--------------HHHHHHHHHHHHHcCCccch--hHHHHHHHH----HHHHHhhhhhHHHHHHHHHHHHhhCc
Confidence            99999              99999999999999887543  344555555    44444555555666699999999999


Q ss_pred             CCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcchhH
Q 010976          247 NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH-RAIYNLGTVLYGLAEDT  310 (496)
Q Consensus       247 ~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~-~a~~~lg~~~~~~g~~~  310 (496)
                      ++..+-..+|.++...|+|          +.|++.++.+++.||++. ++...|-.||..+|+..
T Consensus       212 ~cvRAsi~lG~v~~~~g~y----------~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~  266 (389)
T COG2956         212 KCVRASIILGRVELAKGDY----------QKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA  266 (389)
T ss_pred             cceehhhhhhHHHHhccch----------HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence            9999999999999999999          999999999999999974 78888999999999844

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=1.2e-10  Score=114.35  Aligned_cols=164  Identities=16%  Similarity=0.143  Sum_probs=135.5

Q ss_pred             hhhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHH------------HHHHHHHH
Q 010976          108 HQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYD------------ALYNWALV  165 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~------------a~~~lg~~  165 (496)
                      +-..+.++.|....-.++.++          +.+++...+.+.|+.+|+++|.++|+..+            .|...|+-
T Consensus       179 l~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~  258 (486)
T KOG0550|consen  179 LAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGND  258 (486)
T ss_pred             hhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhh
Confidence            345677777777666666555          55677789999999999999999998754            34455555


Q ss_pred             HHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 010976          166 LQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA  241 (496)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~A  241 (496)
                      .++.|+              |..|.++|..+|.++|++    +..|.|++.+...    +|+..+|+       ..+..|
T Consensus       259 ~fk~G~--------------y~~A~E~Yteal~idP~n~~~naklY~nra~v~~r----Lgrl~eai-------sdc~~A  313 (486)
T KOG0550|consen  259 AFKNGN--------------YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIR----LGRLREAI-------SDCNEA  313 (486)
T ss_pred             Hhhccc--------------hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcc----cCCchhhh-------hhhhhh
Confidence            666666              999999999999999985    5679999999999    99999999       899999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976          242 VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  307 (496)
Q Consensus       242 l~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g  307 (496)
                      +.+||.+..++...|.|+..++++          ++|++.|++|++...+ ......++.+-..+.
T Consensus       314 l~iD~syikall~ra~c~l~le~~----------e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLk  368 (486)
T KOG0550|consen  314 LKIDSSYIKALLRRANCHLALEKW----------EEAVEDYEKAMQLEKD-CEIRRTLREAQLALK  368 (486)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhccc-cchHHHHHHHHHHHH
Confidence            999999999999999999999999          9999999999999776 555555555544444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.21  E-value=7.7e-10  Score=100.77  Aligned_cols=128  Identities=22%  Similarity=0.281  Sum_probs=108.7

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHH
Q 010976          153 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEE  229 (496)
Q Consensus       153 P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~~~~~g~~~eA~~  229 (496)
                      +....+++++|.++...|+              +++|+.+|++++.+.|+.   ..+++++|.++..    .|++++|+ 
T Consensus        32 ~~~a~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~-   92 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGE--------------YAEALENYEEALKLEEDPNDRSYILYNMGIIYAS----NGEHDKAL-   92 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH----cCCHHHHH-
Confidence            4567789999999999999              999999999999987764   5789999999999    99999999 


Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchH----HHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 010976          230 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA----REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG  305 (496)
Q Consensus       230 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A----~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~  305 (496)
                            ..|++++..+|++..++.++|.++..+|+...+    ......+++|++++++++.++|++   +...+..+..
T Consensus        93 ------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~  163 (172)
T PRK02603         93 ------EYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKT  163 (172)
T ss_pred             ------HHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHh
Confidence                  788999999999999999999999999986444    234566788999999999999987   4556666666


Q ss_pred             cch
Q 010976          306 LAE  308 (496)
Q Consensus       306 ~g~  308 (496)
                      .|+
T Consensus       164 ~~~  166 (172)
T PRK02603        164 TGR  166 (172)
T ss_pred             cCc
Confidence            654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.20  E-value=5.8e-10  Score=101.14  Aligned_cols=130  Identities=22%  Similarity=0.199  Sum_probs=106.6

Q ss_pred             ccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 010976          136 RILTFAAKRYANAIERNPED--YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFYNW  210 (496)
Q Consensus       136 g~~~~Ai~~~~~al~~~P~~--~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~---~~~a~~~l  210 (496)
                      +.+..+...+...++.++.+  ..+++++|.++..+|+              +++|+..|++++.+.|+   .+.+++++
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~l~~~~~~~~~~~~~l   78 (168)
T CHL00033         13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGE--------------YAEALQNYYEAMRLEIDPYDRSYILYNI   78 (168)
T ss_pred             cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhccccchhhHHHHHHH
Confidence            44555666665555666655  6778999999999999              99999999999999776   34589999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-------cCcchHHHhhhhHHHHHHHHH
Q 010976          211 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL-------SAIVPAREKQTIVRTAISKFR  283 (496)
Q Consensus       211 g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~-------g~~~~A~~~~~~~~~Ai~~~~  283 (496)
                      |.++..    .|++++|+       ..|++++.++|.+...++++|.++..+       |++   .....++++|+..|+
T Consensus        79 g~~~~~----~g~~~eA~-------~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~---~~A~~~~~~a~~~~~  144 (168)
T CHL00033         79 GLIHTS----NGEHTKAL-------EYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDS---EIAEAWFDQAAEYWK  144 (168)
T ss_pred             HHHHHH----cCCHHHHH-------HHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccH---HHHHHHHHHHHHHHH
Confidence            999999    99999999       889999999999999999999999944       454   223455678888888


Q ss_pred             HHHHhcCCCH
Q 010976          284 AAIQLQFDFH  293 (496)
Q Consensus       284 ~Al~l~P~~~  293 (496)
                      +++..+|++.
T Consensus       145 ~a~~~~p~~~  154 (168)
T CHL00033        145 QAIALAPGNY  154 (168)
T ss_pred             HHHHhCcccH
Confidence            9999998754

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.16  E-value=1.3e-09  Score=115.40  Aligned_cols=131  Identities=19%  Similarity=0.146  Sum_probs=114.4

Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Q 010976          136 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--CPTLHDAFYNWAIA  213 (496)
Q Consensus       136 g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~  213 (496)
                      +++.+|+.+|++|++++|+++.+|..++.+|...... .     ......+..+....++++.+  +|.++.+|..+|..
T Consensus       356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~-~-----~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~  429 (517)
T PRK10153        356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQ-Q-----PLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQ  429 (517)
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhc-C-----CccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHH
Confidence            5688999999999999999999999999988776441 1     12224577888888888875  78888999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH
Q 010976          214 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH  293 (496)
Q Consensus       214 ~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~  293 (496)
                      +..    .|++++|.       ..|++|+.++| +..+|+.+|.++...|++          ++|++.|++|+.++|.++
T Consensus       430 ~~~----~g~~~~A~-------~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~----------~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        430 ALV----KGKTDEAY-------QAINKAIDLEM-SWLNYVLLGKVYELKGDN----------RLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             HHh----cCCHHHHH-------HHHHHHHHcCC-CHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCCc
Confidence            988    99999999       89999999999 589999999999999999          999999999999999987


Q ss_pred             H
Q 010976          294 R  294 (496)
Q Consensus       294 ~  294 (496)
                      .
T Consensus       488 t  488 (517)
T PRK10153        488 T  488 (517)
T ss_pred             h
Confidence            5

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.16  E-value=1.1e-09  Score=99.22  Aligned_cols=104  Identities=23%  Similarity=0.249  Sum_probs=92.8

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY  208 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~  208 (496)
                      +..+|++++|+..|++++.+.|+.   +.+++++|.++..+|+              +++|+++|++++.++|.+...+.
T Consensus        45 ~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~--------------~~eA~~~~~~Al~~~~~~~~~~~  110 (168)
T CHL00033         45 AQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE--------------HTKALEYYFQALERNPFLPQALN  110 (168)
T ss_pred             HHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCcCcHHHHH
Confidence            445799999999999999997763   4689999999999999              99999999999999999999999


Q ss_pred             HHHHHHHHH---HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 010976          209 NWAIAISDR---AKMRGRTKEAEELWKQATKNYEKAVQLNWNSP  249 (496)
Q Consensus       209 ~lg~~~~~~---~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~  249 (496)
                      ++|.++..+   +..+|++++|+..|++|+..|++++..+|.+.
T Consensus       111 ~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        111 NMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            999999821   11289999999999999999999999999765

>PRK11906 transcriptional regulator; Provisional

Probab=99.15  E-value=2.9e-09  Score=107.85  Aligned_cols=146  Identities=11%  Similarity=-0.024  Sum_probs=124.9

Q ss_pred             ccHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976          136 RILTFAAKRYANAI---ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  212 (496)
Q Consensus       136 g~~~~Ai~~~~~al---~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  212 (496)
                      ...+.|+.+|.+|+   .++|+++.+|..++.+++...-    .+... ......+|.++.++|++++|.++.++..+|.
T Consensus       272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~----~g~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~  346 (458)
T PRK11906        272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL----HGKSE-LELAAQKALELLDYVSDITTVDGKILAIMGL  346 (458)
T ss_pred             HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH----hcCCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            45678999999999   9999999999999999988732    11112 4556889999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976          213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  292 (496)
Q Consensus       213 ~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~  292 (496)
                      ++..    .++++.|+       ..|++|+.++|+++.+++..|.++.-.|+.          ++|+..+++|++++|.-
T Consensus       347 ~~~~----~~~~~~a~-------~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~----------~~a~~~i~~alrLsP~~  405 (458)
T PRK11906        347 ITGL----SGQAKVSH-------ILFEQAKIHSTDIASLYYYRALVHFHNEKI----------EEARICIDKSLQLEPRR  405 (458)
T ss_pred             HHHh----hcchhhHH-------HHHHHHhhcCCccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHhccCchh
Confidence            9998    99999999       899999999999999999999999999999          99999999999999987


Q ss_pred             HHHHHH-HHH-HHHHcc
Q 010976          293 HRAIYN-LGT-VLYGLA  307 (496)
Q Consensus       293 ~~a~~~-lg~-~~~~~g  307 (496)
                      ..+-.. +-. .|+..+
T Consensus       406 ~~~~~~~~~~~~~~~~~  422 (458)
T PRK11906        406 RKAVVIKECVDMYVPNP  422 (458)
T ss_pred             hHHHHHHHHHHHHcCCc
Confidence            654333 222 455444

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.14  E-value=1.9e-09  Score=119.55  Aligned_cols=166  Identities=10%  Similarity=-0.012  Sum_probs=141.2

Q ss_pred             hhhhhcHHHHHHHHHHhhccchh----------hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 010976          108 HQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS  177 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~~~----------~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~  177 (496)
                      ....|+++.|+..+.+++.....          .+...|++++|+.++++++.-.|.....+..+|.++..+|+      
T Consensus        44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gd------  117 (822)
T PRK14574         44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKR------  117 (822)
T ss_pred             HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC------
Confidence            34678999999999999977733          23456999999999999994445555666666889999999      


Q ss_pred             CCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976          178 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL  257 (496)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  257 (496)
                              +++|++.|+++++.+|+++.++..++.++.+    .++.++|+       ..+++++..+|.+... ..++.
T Consensus       118 --------yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~----~~q~~eAl-------~~l~~l~~~dp~~~~~-l~lay  177 (822)
T PRK14574        118 --------WDQALALWQSSLKKDPTNPDLISGMIMTQAD----AGRGGVVL-------KQATELAERDPTVQNY-MTLSY  177 (822)
T ss_pred             --------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh----cCCHHHHH-------HHHHHhcccCcchHHH-HHHHH
Confidence                    9999999999999999999999999999999    99999999       8999999999986554 55566


Q ss_pred             HHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010976          258 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED  309 (496)
Q Consensus       258 ~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~  309 (496)
                      ++...++.          .+|+..|+++++.+|++..++..+..++...|-.
T Consensus       178 L~~~~~~~----------~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~  219 (822)
T PRK14574        178 LNRATDRN----------YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIV  219 (822)
T ss_pred             HHHhcchH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Confidence            66666666          7899999999999999999999999999988853

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.14  E-value=6.7e-09  Score=107.24  Aligned_cols=134  Identities=13%  Similarity=0.054  Sum_probs=113.4

Q ss_pred             hhhcHHHHHHHHHHhhccchhh---------hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCc
Q 010976          110 LAEQNNAAMELINSVTGVDEEG---------RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSP  180 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~l~~~~~~---------~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~  180 (496)
                      ...+++.|..++.++....+..         ...+++.++|+.+++++|+..|++...|..+|.++.++++         
T Consensus       630 en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~---------  700 (913)
T KOG0495|consen  630 ENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMEN---------  700 (913)
T ss_pred             ccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHH---------
Confidence            4567888889998888766432         2236899999999999999999999999999999999999         


Q ss_pred             chhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010976          181 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ  260 (496)
Q Consensus       181 ~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~  260 (496)
                           .+.|.+.|...++.+|+....|..|+.+-..    .|+.-.|.       ..++++.-.||++...|...-.+-.
T Consensus       701 -----ie~aR~aY~~G~k~cP~~ipLWllLakleEk----~~~~~rAR-------~ildrarlkNPk~~~lwle~Ir~El  764 (913)
T KOG0495|consen  701 -----IEMAREAYLQGTKKCPNSIPLWLLLAKLEEK----DGQLVRAR-------SILDRARLKNPKNALLWLESIRMEL  764 (913)
T ss_pred             -----HHHHHHHHHhccccCCCCchHHHHHHHHHHH----hcchhhHH-------HHHHHHHhcCCCcchhHHHHHHHHH
Confidence                 9999999999999999999999998888877    78888887       7788888888888888877777777


Q ss_pred             HccCcchH
Q 010976          261 ELSAIVPA  268 (496)
Q Consensus       261 ~~g~~~~A  268 (496)
                      +.|+.+.|
T Consensus       765 R~gn~~~a  772 (913)
T KOG0495|consen  765 RAGNKEQA  772 (913)
T ss_pred             HcCCHHHH
Confidence            77777544

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.13  E-value=1.6e-09  Score=91.47  Aligned_cols=107  Identities=24%  Similarity=0.297  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010976          156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWK  232 (496)
Q Consensus       156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~  232 (496)
                      +++++.+|..+...|+              +++|++.|++++..+|++   ..+++.+|.++..    .|++++|+    
T Consensus         2 ~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~----   59 (119)
T TIGR02795         2 EEAYYDAALLVLKAGD--------------YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA----QGKYADAA----   59 (119)
T ss_pred             cHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh----hccHHHHH----
Confidence            4678999999999999              999999999999999886   6789999999999    99999999    


Q ss_pred             HHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010976          233 QATKNYEKAVQLNWNS---PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY  297 (496)
Q Consensus       233 ~A~~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~  297 (496)
                         ..|++++..+|++   +.+++++|.++..+|++          ++|+..|+++++..|++..+..
T Consensus        60 ---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        60 ---KAFLAVVKKYPKSPKAPDALLKLGMSLQELGDK----------EKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             ---HHHHHHHHHCCCCCcccHHHHHHHHHHHHhCCh----------HHHHHHHHHHHHHCcCChhHHH
Confidence               8888888888875   67899999999999999          9999999999999999876543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.12  E-value=2.6e-09  Score=108.62  Aligned_cols=160  Identities=15%  Similarity=-0.002  Sum_probs=134.0

Q ss_pred             hhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010976          134 RQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  210 (496)
Q Consensus       134 ~~g~~~~Ai~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~l  210 (496)
                      ..|+.+.|...|.++.+..|.+   .+..+..+.++...|+              +++|++.++++++.+|++..++.. 
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~--------------~~~A~~~~~~~l~~~P~~~~a~~~-   82 (355)
T cd05804          18 LGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGD--------------LPKALALLEQLLDDYPRDLLALKL-   82 (355)
T ss_pred             hcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCcHHHHHH-
Confidence            3577888899999998888755   5678888999999999              999999999999999999988876 


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcC
Q 010976          211 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF  290 (496)
Q Consensus       211 g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P  290 (496)
                      +..+..    .|++..+.....   ..+......+|....++..+|.++...|++          ++|+..++++++++|
T Consensus        83 ~~~~~~----~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~----------~~A~~~~~~al~~~p  145 (355)
T cd05804          83 HLGAFG----LGDFSGMRDHVA---RVLPLWAPENPDYWYLLGMLAFGLEEAGQY----------DRAEEAARRALELNP  145 (355)
T ss_pred             hHHHHH----hcccccCchhHH---HHHhccCcCCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCC
Confidence            767766    665555443222   333335567788889999999999999999          999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976          291 DFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  344 (496)
Q Consensus       291 ~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~  344 (496)
                      ++..++..+|.+++..|+                   +.++..++.+++...|.
T Consensus       146 ~~~~~~~~la~i~~~~g~-------------------~~eA~~~l~~~l~~~~~  180 (355)
T cd05804         146 DDAWAVHAVAHVLEMQGR-------------------FKEGIAFMESWRDTWDC  180 (355)
T ss_pred             CCcHHHHHHHHHHHHcCC-------------------HHHHHHHHHhhhhccCC
Confidence            999999999999999999                   78888888888887763

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.11  E-value=3.7e-09  Score=112.89  Aligned_cols=133  Identities=21%  Similarity=0.156  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010976          157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK  236 (496)
Q Consensus       157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~  236 (496)
                      ..+...|+.++..|+              +++|+..+.++|+.+|.++.+|+.||.+|.+    +|+..+++       .
T Consensus       140 ~~ll~eAN~lfarg~--------------~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEq----rGd~eK~l-------~  194 (895)
T KOG2076|consen  140 RQLLGEANNLFARGD--------------LEEAEEILMEVIKQDPRNPIAYYTLGEIYEQ----RGDIEKAL-------N  194 (895)
T ss_pred             HHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHhCccchhhHHHHHHHHHH----cccHHHHH-------H
Confidence            446667888889999              9999999999999999999999999999999    99999999       7


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCC
Q 010976          237 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGT  316 (496)
Q Consensus       237 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~  316 (496)
                      .+-.|-.++|++.+.|..++....++|++          ++|+-+|.+||+.+|.+....++...+|.++|+        
T Consensus       195 ~~llAAHL~p~d~e~W~~ladls~~~~~i----------~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~--------  256 (895)
T KOG2076|consen  195 FWLLAAHLNPKDYELWKRLADLSEQLGNI----------NQARYCYSRAIQANPSNWELIYERSSLYQKTGD--------  256 (895)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHhcccH----------HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCh--------
Confidence            88889999999999999999999999999          999999999999999999999999999999998        


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 010976          317 VNPREVSPNELYSQSAIYIAAAHALKP  343 (496)
Q Consensus       317 ~~~~~~~~~~~~~~A~~~~~~a~~l~p  343 (496)
                                 +..|...|.+.+.+.|
T Consensus       257 -----------~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  257 -----------LKRAMETFLQLLQLDP  272 (895)
T ss_pred             -----------HHHHHHHHHHHHhhCC
Confidence                       7888999999999999

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=4.6e-09  Score=103.36  Aligned_cols=188  Identities=10%  Similarity=0.039  Sum_probs=157.9

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCC--------------------CCCCCcchhhhHHH
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS--------------------LDSTSPSKDALLEE  188 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~--------------------~~~~~~~~~~~~~~  188 (496)
                      +.+++..|++.+|+..|+++..+||....+.-.+|.++...|+.-.                    .........++++.
T Consensus       239 ak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~r  318 (564)
T KOG1174|consen  239 GKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFER  318 (564)
T ss_pred             hhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHH
Confidence            5667888999999999999999999999999999999888877310                    00112334678999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchH
Q 010976          189 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA  268 (496)
Q Consensus       189 A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A  268 (496)
                      |+.+-+++|..+|.+..++...|.++..    .|+..+|+       -.|+.|+.+.|.....|-.|-.+|...|++.||
T Consensus       319 AL~~~eK~I~~~~r~~~alilKG~lL~~----~~R~~~A~-------IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA  387 (564)
T KOG1174|consen  319 ALNFVEKCIDSEPRNHEALILKGRLLIA----LERHTQAV-------IAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA  387 (564)
T ss_pred             HHHHHHHHhccCcccchHHHhccHHHHh----ccchHHHH-------HHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence            9999999999999999999999999999    99999999       899999999999999999999999999999887


Q ss_pred             HH--------------------------hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCC
Q 010976          269 RE--------------------------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREV  322 (496)
Q Consensus       269 ~~--------------------------~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~  322 (496)
                      .-                          ...--++|...|+++|.++|.+..+...++.++...|+              
T Consensus       388 ~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~--------------  453 (564)
T KOG1174|consen  388 NALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGP--------------  453 (564)
T ss_pred             HHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCc--------------
Confidence            11                          11233788899999999999999999999999988887              


Q ss_pred             CcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          323 SPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       323 ~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                           +..++..+++.+...|+..
T Consensus       454 -----~~D~i~LLe~~L~~~~D~~  472 (564)
T KOG1174|consen  454 -----TKDIIKLLEKHLIIFPDVN  472 (564)
T ss_pred             -----cchHHHHHHHHHhhccccH
Confidence                 5666777777777777655

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=2.5e-09  Score=102.47  Aligned_cols=123  Identities=17%  Similarity=0.130  Sum_probs=111.9

Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010976          136 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS  215 (496)
Q Consensus       136 g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~  215 (496)
                      ...+.-+...+.-+..||+|.+-|..||.+|..+|+              +..|...|.+|+++.|++++.+..+|.++.
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~--------------~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~  201 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGR--------------ASDALLAYRNALRLAGDNPEILLGLAEALY  201 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcc--------------hhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            346778888999999999999999999999999999              999999999999999999999999999987


Q ss_pred             HHHHHcC---CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976          216 DRAKMRG---RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  292 (496)
Q Consensus       216 ~~~~~~g---~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~  292 (496)
                      .    +.   ...++.       ..+++++.+||++..+++.||..+++.|+|          .+|+..++..+...|.+
T Consensus       202 ~----~a~~~~ta~a~-------~ll~~al~~D~~~iral~lLA~~afe~g~~----------~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         202 Y----QAGQQMTAKAR-------ALLRQALALDPANIRALSLLAFAAFEQGDY----------AEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             H----hcCCcccHHHH-------HHHHHHHhcCCccHHHHHHHHHHHHHcccH----------HHHHHHHHHHHhcCCCC
Confidence            6    33   234444       899999999999999999999999999999          99999999999998765


Q ss_pred             H
Q 010976          293 H  293 (496)
Q Consensus       293 ~  293 (496)
                      .
T Consensus       261 ~  261 (287)
T COG4235         261 D  261 (287)
T ss_pred             C
Confidence            4

>PRK11906 transcriptional regulator; Provisional

Probab=99.10  E-value=7.2e-09  Score=105.02  Aligned_cols=158  Identities=12%  Similarity=0.028  Sum_probs=130.7

Q ss_pred             HHHhCCCCH---HHH----HHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHH
Q 010976          148 AIERNPEDY---DAL----YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEAT---RLCPTLHDAFYNWAIAISDR  217 (496)
Q Consensus       148 al~~~P~~~---~a~----~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al---~l~P~~~~a~~~lg~~~~~~  217 (496)
                      +...-|.+.   ++|    +.+|.-....+.           ....+.|..+|.+|+   .++|+++.+|..++.|+..+
T Consensus       240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t-----------~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~  308 (458)
T PRK11906        240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFT-----------PESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSL  308 (458)
T ss_pred             hhcCCCCCcccccchhhHHHHHHHHHhhccC-----------HHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHH
Confidence            344446666   555    566666655544           223788999999999   99999999999999999884


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010976          218 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY  297 (496)
Q Consensus       218 ~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~  297 (496)
                      +.+.+ .+ -...-.+|....++|++++|.++.++..+|.++...+++          +.|+..|++|+.++|+++.+++
T Consensus       309 ~~~g~-~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~----------~~a~~~f~rA~~L~Pn~A~~~~  376 (458)
T PRK11906        309 ALHGK-SE-LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA----------KVSHILFEQAKIHSTDIASLYY  376 (458)
T ss_pred             HHhcC-CC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch----------hhHHHHHHHHhhcCCccHHHHH
Confidence            33222 22 233345677999999999999999999999999999999          9999999999999999999999


Q ss_pred             HHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHH
Q 010976          298 NLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV  347 (496)
Q Consensus       298 ~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~  347 (496)
                      ..|.++...|+                   ..+|...++++++++|-...
T Consensus       377 ~~~~~~~~~G~-------------------~~~a~~~i~~alrLsP~~~~  407 (458)
T PRK11906        377 YRALVHFHNEK-------------------IEEARICIDKSLQLEPRRRK  407 (458)
T ss_pred             HHHHHHHHcCC-------------------HHHHHHHHHHHhccCchhhH
Confidence            99999999999                   78999999999999998773

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=3.2e-09  Score=101.68  Aligned_cols=129  Identities=19%  Similarity=0.172  Sum_probs=117.6

Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 010976          184 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS  263 (496)
Q Consensus       184 ~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g  263 (496)
                      ...++-+.-++.-++.||+|.+-|..||.+|..    +|++..|.       ..|.+|+++.|++++.+..+|.++....
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~----~~~~~~A~-------~AY~~A~rL~g~n~~~~~g~aeaL~~~a  204 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMA----LGRASDAL-------LAYRNALRLAGDNPEILLGLAEALYYQA  204 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcchhHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            347888899999999999999999999999999    99999999       8999999999999999999999988766


Q ss_pred             CcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 010976          264 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP  343 (496)
Q Consensus       264 ~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p  343 (496)
                      .-       .+-.++...|++++++||.+..+.+.||..++..|+                   |.+|+..++..+.+.|
T Consensus       205 ~~-------~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~-------------------~~~A~~~Wq~lL~~lp  258 (287)
T COG4235         205 GQ-------QMTAKARALLRQALALDPANIRALSLLAFAAFEQGD-------------------YAEAAAAWQMLLDLLP  258 (287)
T ss_pred             CC-------cccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccc-------------------HHHHHHHHHHHHhcCC
Confidence            53       344789999999999999999999999999999999                   9999999999999988


Q ss_pred             cHHHHH
Q 010976          344 SYSVYS  349 (496)
Q Consensus       344 ~~~~y~  349 (496)
                      .+.-..
T Consensus       259 ~~~~rr  264 (287)
T COG4235         259 ADDPRR  264 (287)
T ss_pred             CCCchH
Confidence            877333

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.08  E-value=2e-09  Score=85.18  Aligned_cols=99  Identities=33%  Similarity=0.474  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 010976          158 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN  237 (496)
Q Consensus       158 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~  237 (496)
                      +++++|.++...|+              +++|+..++++++..|++..+++.+|.++..    .|++++|+       ..
T Consensus         2 ~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~-------~~   56 (100)
T cd00189           2 ALLNLGNLYYKLGD--------------YDEALEYYEKALELDPDNADAYYNLAAAYYK----LGKYEEAL-------ED   56 (100)
T ss_pred             HHHHHHHHHHHHhc--------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----HHHHHHHH-------HH
Confidence            57899999999999              9999999999999999999999999999999    88888888       89


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976          238 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  291 (496)
Q Consensus       238 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~  291 (496)
                      |++++...|.+..+++.+|.++...|++          ++|+..+.++++..|+
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~~~~~~~  100 (100)
T cd00189          57 YEKALELDPDNAKAYYNLGLAYYKLGKY----------EEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHhCCCcchhHHHHHHHHHHHHHhH----------HHHHHHHHHHHccCCC
Confidence            9999999999999999999999999999          9999999999988774

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.08  E-value=5.4e-10  Score=85.26  Aligned_cols=68  Identities=32%  Similarity=0.508  Sum_probs=63.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHH
Q 010976          154 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG-RTKEAEELWK  232 (496)
Q Consensus       154 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g-~~~eA~~~~~  232 (496)
                      +++.+|+.+|.+++..|+              +++|+.+|+++++++|+++.+++++|.++..    +| ++.+|+    
T Consensus         1 e~a~~~~~~g~~~~~~~~--------------~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~----~~~~~~~A~----   58 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGD--------------YEEAIEYFEKAIELDPNNAEAYYNLGLAYMK----LGKDYEEAI----   58 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTH--------------HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH----TTTHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCccHHHHH----
Confidence            367899999999999999              9999999999999999999999999999999    99 688988    


Q ss_pred             HHHHHHHHHHhcCC
Q 010976          233 QATKNYEKAVQLNW  246 (496)
Q Consensus       233 ~A~~~~~~Al~l~P  246 (496)
                         ..|+++++++|
T Consensus        59 ---~~~~~al~l~P   69 (69)
T PF13414_consen   59 ---EDFEKALKLDP   69 (69)
T ss_dssp             ---HHHHHHHHHST
T ss_pred             ---HHHHHHHHcCc
Confidence               88899998887

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.08  E-value=6e-09  Score=110.39  Aligned_cols=155  Identities=19%  Similarity=0.093  Sum_probs=124.1

Q ss_pred             HhCCCCHHHHH--HHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHH
Q 010976          150 ERNPEDYDALY--NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEA  227 (496)
Q Consensus       150 ~~~P~~~~a~~--~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA  227 (496)
                      ..-|.+.++|-  ..|.-|...++           .+.+.+|+.+|++|++++|+++.+|-.++.+|..    ...+...
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~-----------~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~----~~~~~~~  395 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGD-----------AKSLNKASDLLEEILKSEPDFTYAQAEKALADIV----RHSQQPL  395 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HHhcCCc
Confidence            34577777764  44555554433           3448899999999999999999999999998876    3222211


Q ss_pred             -HHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010976          228 -EELWKQATKNYEKAVQL--NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY  304 (496)
Q Consensus       228 -~~~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~  304 (496)
                       ...+.++....++++.+  +|..+.+|.-+|..+...|++          ++|+..|++|++++| +..+|..+|.++.
T Consensus       396 ~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~----------~~A~~~l~rAl~L~p-s~~a~~~lG~~~~  464 (517)
T PRK10153        396 DEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT----------DEAYQAINKAIDLEM-SWLNYVLLGKVYE  464 (517)
T ss_pred             cHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence             12345566777777774  788889999999999999999          999999999999999 5889999999999


Q ss_pred             HcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHH
Q 010976          305 GLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS  349 (496)
Q Consensus       305 ~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~  349 (496)
                      ..|+                   +.+|+..|++|+.++|.++.|.
T Consensus       465 ~~G~-------------------~~eA~~~~~~A~~L~P~~pt~~  490 (517)
T PRK10153        465 LKGD-------------------NRLAADAYSTAFNLRPGENTLY  490 (517)
T ss_pred             HcCC-------------------HHHHHHHHHHHHhcCCCCchHH
Confidence            9999                   8999999999999999988543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.07  E-value=4e-09  Score=96.02  Aligned_cols=116  Identities=22%  Similarity=0.299  Sum_probs=96.6

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY  208 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~  208 (496)
                      +...|++++|+.+|++++++.|+.   ..+++++|.++..+|+              +++|+.+|++++.++|++..++.
T Consensus        45 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         45 AQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE--------------HDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             HHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCcccHHHHH
Confidence            456799999999999999987764   5789999999999999              99999999999999999999999


Q ss_pred             HHHHHHHHH---HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 010976          209 NWAIAISDR---AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA  264 (496)
Q Consensus       209 ~lg~~~~~~---~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~  264 (496)
                      ++|.++...   ....+++++|+..|++|++++++++.++|++   +...+..+...|+
T Consensus       111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~  166 (172)
T PRK02603        111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence            999999871   1113457888888999999999999999987   4445555554444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.07  E-value=5.5e-10  Score=85.21  Aligned_cols=68  Identities=32%  Similarity=0.447  Sum_probs=64.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CcchHHHhhhhHHHHHH
Q 010976          202 TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS-AIVPAREKQTIVRTAIS  280 (496)
Q Consensus       202 ~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g-~~~~A~~~~~~~~~Ai~  280 (496)
                      +++..|+++|.++..    .|++++|+       .+|.++++++|+++.+++++|.++..+| ++          ++|+.
T Consensus         1 e~a~~~~~~g~~~~~----~~~~~~A~-------~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~----------~~A~~   59 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQ----QGDYEEAI-------EYFEKAIELDPNNAEAYYNLGLAYMKLGKDY----------EEAIE   59 (69)
T ss_dssp             TSHHHHHHHHHHHHH----TTHHHHHH-------HHHHHHHHHSTTHHHHHHHHHHHHHHTTTHH----------HHHHH
T ss_pred             CHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCCHHHHHHHHHHHHHhCccH----------HHHHH
Confidence            367899999999999    99999999       8999999999999999999999999999 78          99999


Q ss_pred             HHHHHHHhcC
Q 010976          281 KFRAAIQLQF  290 (496)
Q Consensus       281 ~~~~Al~l~P  290 (496)
                      .|+++++++|
T Consensus        60 ~~~~al~l~P   69 (69)
T PF13414_consen   60 DFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHST
T ss_pred             HHHHHHHcCc
Confidence            9999999998

...

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.06  E-value=1.3e-09  Score=113.98  Aligned_cols=194  Identities=15%  Similarity=0.122  Sum_probs=156.9

Q ss_pred             hhhcHHHHHHHHHHhhccc--hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------hcCCCCCC--
Q 010976          110 LAEQNNAAMELINSVTGVD--EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQE---------SADNVSLD--  176 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~l~~~--~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~---------~~~~~~~~--  176 (496)
                      ..|-...|+..+++.-...  ..||...|+..+|.....+-++ +|.++..|..+|.+...         .+++....  
T Consensus       410 slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~  488 (777)
T KOG1128|consen  410 SLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQ  488 (777)
T ss_pred             HcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHH
Confidence            4566667777776655444  3567778999999999999888 78888889888877532         11111111  


Q ss_pred             ---CCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 010976          177 ---STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALN  253 (496)
Q Consensus       177 ---~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~  253 (496)
                         +......++|+++.++++..++++|-....||++|.+..+    +++++.|.       .+|.+++.++|++.++|+
T Consensus       489 r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq----lek~q~av-------~aF~rcvtL~Pd~~eaWn  557 (777)
T KOG1128|consen  489 RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ----LEKEQAAV-------KAFHRCVTLEPDNAEAWN  557 (777)
T ss_pred             HhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH----HhhhHHHH-------HHHHHHhhcCCCchhhhh
Confidence               0112335789999999999999999999999999999999    88888888       899999999999999999


Q ss_pred             HHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHH
Q 010976          254 NWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAI  333 (496)
Q Consensus       254 ~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~  333 (496)
                      |++.+|..+|+.          .+|...+.+|++.+-+++.+|-|.-.+..+.|.                   ++.|..
T Consensus       558 Nls~ayi~~~~k----------~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge-------------------~eda~~  608 (777)
T KOG1128|consen  558 NLSTAYIRLKKK----------KRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE-------------------FEDAIK  608 (777)
T ss_pred             hhhHHHHHHhhh----------HHHHHHHHHHhhcCCCCCeeeechhhhhhhccc-------------------HHHHHH
Confidence            999999999999          999999999999999999999999999999998                   777777


Q ss_pred             HHHHHHhcCCc
Q 010976          334 YIAAAHALKPS  344 (496)
Q Consensus       334 ~~~~a~~l~p~  344 (496)
                      .|.+.+.+.-.
T Consensus       609 A~~rll~~~~~  619 (777)
T KOG1128|consen  609 AYHRLLDLRKK  619 (777)
T ss_pred             HHHHHHHhhhh
Confidence            77777665443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.06  E-value=7.2e-09  Score=111.36  Aligned_cols=150  Identities=17%  Similarity=0.080  Sum_probs=136.7

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  214 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~  214 (496)
                      ..+...|...|-++++++|..+.+|..||.+|...-+              ...|.++|++|.++|++++.++-..+..|
T Consensus       471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~D--------------m~RA~kCf~KAFeLDatdaeaaaa~adty  536 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDD--------------MKRAKKCFDKAFELDATDAEAAAASADTY  536 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhcCCchhhhhHHHHHHHh
Confidence            4668889999999999999999999999999999988              99999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHH-----------------------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          215 SDRAKMRGRTKEAEEL-----------------------------WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       215 ~~~~~~~g~~~eA~~~-----------------------------~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      ..    ..++++|...                             +.+|+..|+.|++.+|++..+|..+|.+|...|++
T Consensus       537 ae----~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry  612 (1238)
T KOG1127|consen  537 AE----ESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRY  612 (1238)
T ss_pred             hc----cccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCce
Confidence            88    8888877643                             24588999999999999999999999999999999


Q ss_pred             chHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHh
Q 010976          266 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLR  312 (496)
Q Consensus       266 ~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a  312 (496)
                                ..|++.|.+|..++|.+..+.|-.+.....+|+...+
T Consensus       613 ----------~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea  649 (1238)
T KOG1127|consen  613 ----------SHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA  649 (1238)
T ss_pred             ----------ehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence                      9999999999999999999999999999999985443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.05  E-value=2.8e-09  Score=117.21  Aligned_cols=206  Identities=11%  Similarity=0.030  Sum_probs=152.0

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCC----CCCCcchhhhHHHHHHHHHHHHHhCCCCHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSL----DSTSPSKDALLEEACKKYDEATRLCPTLHDAF  207 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~----~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~  207 (496)
                      +...+++++|+..++.+++.+|+...+|+.+|.++++.++.-+.    -........++ .++++|...+...+++..++
T Consensus        41 ~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al  119 (906)
T PRK14720         41 YKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVEHICDKILLYGENKLAL  119 (906)
T ss_pred             HHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHHHHHHHHHhhhhhhHHH
Confidence            34579999999999999999999999999999999988872000    00012223334 66777777777788888999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchH-------------------
Q 010976          208 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA-------------------  268 (496)
Q Consensus       208 ~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A-------------------  268 (496)
                      +.||.||..    +|++++|.       ..|+++++++|+|+.+++|+|..|... +.+.|                   
T Consensus       120 ~~LA~~Ydk----~g~~~ka~-------~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~  187 (906)
T PRK14720        120 RTLAEAYAK----LNENKKLK-------GVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVG  187 (906)
T ss_pred             HHHHHHHHH----cCChHHHH-------HHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchH
Confidence            999999999    99999999       899999999999999999999999999 88887                   


Q ss_pred             ---------------------------------------------HHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010976          269 ---------------------------------------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL  303 (496)
Q Consensus       269 ---------------------------------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~  303 (496)
                                                                   +...+++++++..++.+|+++|+|..+.+.++.+|
T Consensus       188 ~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y  267 (906)
T PRK14720        188 IEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFY  267 (906)
T ss_pred             HHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence                                                         11467888999999999999999999999999998


Q ss_pred             HHcchhHHhccCCCCCCCCCc-HHHHHHHHHHHHHHHhcCCcHHHHHH
Q 010976          304 YGLAEDTLRTGGTVNPREVSP-NELYSQSAIYIAAAHALKPSYSVYSS  350 (496)
Q Consensus       304 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~A~~~~~~a~~l~p~~~~y~~  350 (496)
                      ...-....-....+.-..+.. ...+..++.-|++-+.+++.+-+|.+
T Consensus       268 ~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G~yv~H~  315 (906)
T PRK14720        268 KEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTGNFVYHR  315 (906)
T ss_pred             HHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCCCEEEEc
Confidence            844321100000000000111 11255666667777777776654443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.04  E-value=1.9e-08  Score=101.52  Aligned_cols=125  Identities=19%  Similarity=0.064  Sum_probs=119.8

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010976          152 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW  231 (496)
Q Consensus       152 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~  231 (496)
                      +|....++|..+..++..|+              +++|...++..++..|+|+..+...+.++..    .++..+|+   
T Consensus       302 ~~~~~aa~YG~A~~~~~~~~--------------~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~----~nk~~~A~---  360 (484)
T COG4783         302 KRGGLAAQYGRALQTYLAGQ--------------YDEALKLLQPLIAAQPDNPYYLELAGDILLE----ANKAKEAI---  360 (484)
T ss_pred             CccchHHHHHHHHHHHHhcc--------------cchHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHH---
Confidence            37888999999999999999              9999999999999999999999999999999    99999999   


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHH
Q 010976          232 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL  311 (496)
Q Consensus       232 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~  311 (496)
                          +.+++++.++|+.+..+.++|.+|.+.|++          ++|+..++..+.-+|+++..|..|+.+|..+|+...
T Consensus       361 ----e~~~kal~l~P~~~~l~~~~a~all~~g~~----------~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~  426 (484)
T COG4783         361 ----ERLKKALALDPNSPLLQLNLAQALLKGGKP----------QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE  426 (484)
T ss_pred             ----HHHHHHHhcCCCccHHHHHHHHHHHhcCCh----------HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence                899999999999999999999999999999          999999999999999999999999999999998543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.03  E-value=6e-09  Score=87.93  Aligned_cols=110  Identities=19%  Similarity=0.192  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCcchHHHhhhhHHHHHH
Q 010976          204 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS---PQALNNWGLALQELSAIVPAREKQTIVRTAIS  280 (496)
Q Consensus       204 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~  280 (496)
                      ++.++.+|..+..    .|++++|+       ..|.+++..+|++   ..+++.+|.++...|++          ++|+.
T Consensus         2 ~~~~~~~~~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~   60 (119)
T TIGR02795         2 EEAYYDAALLVLK----AGDYADAI-------QAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKY----------ADAAK   60 (119)
T ss_pred             cHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHHCCCccccHHHHHHHHHHHHhhccH----------HHHHH
Confidence            4678999999999    99999999       7888888888876   67999999999999999          99999


Q ss_pred             HHHHHHHhcCCC---HHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 010976          281 KFRAAIQLQFDF---HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALR  353 (496)
Q Consensus       281 ~~~~Al~l~P~~---~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~  353 (496)
                      .|++++...|++   +.+++++|.++..+|+                   +..|..++.+++...|+......+..
T Consensus        61 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-------------------~~~A~~~~~~~~~~~p~~~~~~~~~~  117 (119)
T TIGR02795        61 AFLAVVKKYPKSPKAPDALLKLGMSLQELGD-------------------KEKAKATLQQVIKRYPGSSAAKLAQK  117 (119)
T ss_pred             HHHHHHHHCCCCCcccHHHHHHHHHHHHhCC-------------------hHHHHHHHHHHHHHCcCChhHHHHHh
Confidence            999999998885   6789999999999998                   88999999999999999887666543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.02  E-value=3.8e-09  Score=116.19  Aligned_cols=167  Identities=11%  Similarity=0.026  Sum_probs=134.2

Q ss_pred             HhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 010976          150 ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE  229 (496)
Q Consensus       150 ~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~  229 (496)
                      ..+|.+..+|..|...+...++              +++|+..++.+++.+|+...+|+.+|.++..    .+++.++.-
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~--------------~deai~i~~~~l~~~P~~i~~yy~~G~l~~q----~~~~~~~~l   86 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENL--------------TDEAKDICEEHLKEHKKSISALYISGILSLS----RRPLNDSNL   86 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhCCcceehHHHHHHHHHh----hcchhhhhh
Confidence            4579999999999999999999              9999999999999999999999999999998    888877762


Q ss_pred             H-----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHH
Q 010976          230 L-----------WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN  298 (496)
Q Consensus       230 ~-----------~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~  298 (496)
                      .           | .++++|...+...+++-.+++.||.||-++|+.          ++|...|+++|+++|+|+.+++|
T Consensus        87 v~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~----------~ka~~~yer~L~~D~~n~~aLNn  155 (906)
T PRK14720         87 LNLIDSFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNEN----------KKLKGVWERLVKADRDNPEIVKK  155 (906)
T ss_pred             hhhhhhcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhcCcccHHHHHH
Confidence            2           2 466777777777888889999999999999999          99999999999999999999999


Q ss_pred             HHHHHHHcchhHHhccCCCCCCCCCc-HHHHHHHHHHHHHHHhcCCcHH
Q 010976          299 LGTVLYGLAEDTLRTGGTVNPREVSP-NELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       299 lg~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                      +|..|... +...+..-...+..... ...|..+..++.+...++|++-
T Consensus       156 ~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~  203 (906)
T PRK14720        156 LATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDF  203 (906)
T ss_pred             HHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccc
Confidence            99999988 53332211111100000 1135666677777777777765

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.01  E-value=1e-07  Score=91.51  Aligned_cols=192  Identities=12%  Similarity=0.049  Sum_probs=154.1

Q ss_pred             hhhhhhcHHHHHHHHHHhhccch----------hhhHhhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcC
Q 010976          107 PHQLAEQNNAAMELINSVTGVDE----------EGRSRQRILTFAAKRYANAIERNPED-----YDALYNWALVLQESAD  171 (496)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~l~~~~----------~~~~~~g~~~~Ai~~~~~al~~~P~~-----~~a~~~lg~~~~~~~~  171 (496)
                      .+..+|-+|.|...|........          ..|-...+|.+||+.-++..++.++.     +..+..|+..+....+
T Consensus       116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~  195 (389)
T COG2956         116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD  195 (389)
T ss_pred             HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence            34567888999998888776441          22344589999999999999998875     4557777877777777


Q ss_pred             CCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC-HH
Q 010976          172 NVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS-PQ  250 (496)
Q Consensus       172 ~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~-~~  250 (496)
                                    ++.|+..+.+|++.+|+...+-..+|.++..    .|+|..|+       +.++.+++.||.+ ++
T Consensus       196 --------------~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~----~g~y~~AV-------~~~e~v~eQn~~yl~e  250 (389)
T COG2956         196 --------------VDRARELLKKALQADKKCVRASIILGRVELA----KGDYQKAV-------EALERVLEQNPEYLSE  250 (389)
T ss_pred             --------------HHHHHHHHHHHHhhCccceehhhhhhHHHHh----ccchHHHH-------HHHHHHHHhChHHHHH
Confidence                          9999999999999999999999999999999    99999999       8999999999986 56


Q ss_pred             HHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHH
Q 010976          251 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQ  330 (496)
Q Consensus       251 a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  330 (496)
                      +...|-.+|.++|+.          ++.+..++++.+..++........-.+....|.                    ..
T Consensus       251 vl~~L~~~Y~~lg~~----------~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~--------------------~~  300 (389)
T COG2956         251 VLEMLYECYAQLGKP----------AEGLNFLRRAMETNTGADAELMLADLIELQEGI--------------------DA  300 (389)
T ss_pred             HHHHHHHHHHHhCCH----------HHHHHHHHHHHHccCCccHHHHHHHHHHHhhCh--------------------HH
Confidence            888999999999999          999999999999988755444333344445553                    56


Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHH
Q 010976          331 SAIYIAAAHALKPSYSVYSSALR  353 (496)
Q Consensus       331 A~~~~~~a~~l~p~~~~y~~al~  353 (496)
                      |..++.+-++-+|....+...+.
T Consensus       301 Aq~~l~~Ql~r~Pt~~gf~rl~~  323 (389)
T COG2956         301 AQAYLTRQLRRKPTMRGFHRLMD  323 (389)
T ss_pred             HHHHHHHHHhhCCcHHHHHHHHH
Confidence            77777777888887765554443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.00  E-value=2.5e-08  Score=103.26  Aligned_cols=209  Identities=10%  Similarity=0.016  Sum_probs=130.9

Q ss_pred             hhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCc
Q 010976          111 AEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSP  180 (496)
Q Consensus       111 ~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~  180 (496)
                      .++|...+.....++...          +..+...|+-++|..+...+++.++.....|..+|.++..-.+         
T Consensus        20 ~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~---------   90 (700)
T KOG1156|consen   20 TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKK---------   90 (700)
T ss_pred             HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhh---------
Confidence            455555666665555433          2334556788888888888888888888888888888887777         


Q ss_pred             chhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010976          181 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ  260 (496)
Q Consensus       181 ~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~  260 (496)
                           |++|+++|+.|+.+.|+|...|..++....+    +++++-..       ..-.+.+++.|.+-..|...+.++.
T Consensus        91 -----Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q----mRd~~~~~-------~tr~~LLql~~~~ra~w~~~Avs~~  154 (700)
T KOG1156|consen   91 -----YDEAIKCYRNALKIEKDNLQILRDLSLLQIQ----MRDYEGYL-------ETRNQLLQLRPSQRASWIGFAVAQH  154 (700)
T ss_pred             -----HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----HHhhhhHH-------HHHHHHHHhhhhhHHHHHHHHHHHH
Confidence                 8888888888888888888888888888777    77777766       5666677778888888888888888


Q ss_pred             HccCcchHHHhhhhHHHHHHHHHHHHHhc---CCCH-----HHHHHHHHHHHHcchhHHhccCCCC---------CCCCC
Q 010976          261 ELSAIVPAREKQTIVRTAISKFRAAIQLQ---FDFH-----RAIYNLGTVLYGLAEDTLRTGGTVN---------PREVS  323 (496)
Q Consensus       261 ~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~---P~~~-----~a~~~lg~~~~~~g~~~~a~~~~~~---------~~~~~  323 (496)
                      ..|++          ..|....+.-.+..   |...     ........++.+.|....+......         +....
T Consensus       155 L~g~y----------~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~  224 (700)
T KOG1156|consen  155 LLGEY----------KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEET  224 (700)
T ss_pred             HHHHH----------HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhh
Confidence            88887          55554444433322   2211     1222222233333321111100000         00001


Q ss_pred             cHH------HHHHHHHHHHHHHhcCCcHHHHHHHHHh
Q 010976          324 PNE------LYSQSAIYIAAAHALKPSYSVYSSALRL  354 (496)
Q Consensus       324 ~~~------~~~~A~~~~~~a~~l~p~~~~y~~al~~  354 (496)
                      .++      .+.+|...|...+..+|++-.|...+..
T Consensus       225 ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~  261 (700)
T KOG1156|consen  225 KADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEK  261 (700)
T ss_pred             HHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHH
Confidence            111      2578888888889999998866555443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.99  E-value=2.7e-08  Score=100.38  Aligned_cols=109  Identities=20%  Similarity=0.116  Sum_probs=104.8

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  211 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  211 (496)
                      ++..|++++|...++..++..|+|+..+...+.++...++              ..+|++.+++++.++|+....+.++|
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk--------------~~~A~e~~~kal~l~P~~~~l~~~~a  381 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK--------------AKEAIERLKKALALDPNSPLLQLNLA  381 (484)
T ss_pred             HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            3446899999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      .+|..    .|++.+|+       ..+...+.-+|+++..|..|+.+|..+|+.
T Consensus       382 ~all~----~g~~~eai-------~~L~~~~~~~p~dp~~w~~LAqay~~~g~~  424 (484)
T COG4783         382 QALLK----GGKPQEAI-------RILNRYLFNDPEDPNGWDLLAQAYAELGNR  424 (484)
T ss_pred             HHHHh----cCChHHHH-------HHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence            99999    99999999       899999999999999999999999999999

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.98  E-value=6.3e-09  Score=111.82  Aligned_cols=80  Identities=24%  Similarity=0.295  Sum_probs=75.6

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976          134 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA  213 (496)
Q Consensus       134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  213 (496)
                      ..+++..|+..|+.+++.+|.+..+|..+|.+|-..|+              +.-|++.|.+|..++|.+....|..+.+
T Consensus       574 ea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr--------------y~~AlKvF~kAs~LrP~s~y~~fk~A~~  639 (1238)
T KOG1127|consen  574 EAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR--------------YSHALKVFTKASLLRPLSKYGRFKEAVM  639 (1238)
T ss_pred             CccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc--------------eehHHHhhhhhHhcCcHhHHHHHHHHHH
Confidence            34789999999999999999999999999999999999              9999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHH
Q 010976          214 ISDRAKMRGRTKEAEELW  231 (496)
Q Consensus       214 ~~~~~~~~g~~~eA~~~~  231 (496)
                      ...    .|+|.+|+..+
T Consensus       640 ecd----~GkYkeald~l  653 (1238)
T KOG1127|consen  640 ECD----NGKYKEALDAL  653 (1238)
T ss_pred             HHH----hhhHHHHHHHH
Confidence            999    99999998665

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.97  E-value=8.4e-09  Score=108.57  Aligned_cols=127  Identities=23%  Similarity=0.163  Sum_probs=119.9

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  211 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  211 (496)
                      +.+.++.++|..++.++-.++|..+..|+..|.++...|.              +++|.+.|..|+.++|++..+...+|
T Consensus       660 ~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~--------------~~EA~~af~~Al~ldP~hv~s~~Ala  725 (799)
T KOG4162|consen  660 FLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ--------------LEEAKEAFLVALALDPDHVPSMTALA  725 (799)
T ss_pred             HHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHh--------------hHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            5556888999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc
Q 010976          212 IAISDRAKMRGRTKEAEELWKQATK--NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ  289 (496)
Q Consensus       212 ~~~~~~~~~~g~~~eA~~~~~~A~~--~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~  289 (496)
                      .++..    .|+..-|.       .  .+..++++||.++++|+++|.++..+|+.          ++|.++|..|+++.
T Consensus       726 ~~lle----~G~~~la~-------~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~----------~~Aaecf~aa~qLe  784 (799)
T KOG4162|consen  726 ELLLE----LGSPRLAE-------KRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS----------KQAAECFQAALQLE  784 (799)
T ss_pred             HHHHH----hCCcchHH-------HHHHHHHHHhhCCCCHHHHHHHHHHHHHccch----------HHHHHHHHHHHhhc
Confidence            99999    99877776       5  88999999999999999999999999999          99999999999998


Q ss_pred             CCCH
Q 010976          290 FDFH  293 (496)
Q Consensus       290 P~~~  293 (496)
                      +.+|
T Consensus       785 ~S~P  788 (799)
T KOG4162|consen  785 ESNP  788 (799)
T ss_pred             cCCC
Confidence            8765

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.97  E-value=5e-09  Score=109.72  Aligned_cols=163  Identities=15%  Similarity=0.038  Sum_probs=130.3

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY  208 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~  208 (496)
                      +..+...|-...|+..|++.        ..|.....+|...|+              ..+|.....+-++ +|.++..|.
T Consensus       405 aell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~--------------~~kaeei~~q~le-k~~d~~lyc  461 (777)
T KOG1128|consen  405 AELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQ--------------HGKAEEINRQELE-KDPDPRLYC  461 (777)
T ss_pred             HHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcc--------------cchHHHHHHHHhc-CCCcchhHH
Confidence            34456678888999998874        668888899999998              8888888888888 788888888


Q ss_pred             HHHHHHHHH-----HHHcCCHHHHH------------HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHh
Q 010976          209 NWAIAISDR-----AKMRGRTKEAE------------ELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREK  271 (496)
Q Consensus       209 ~lg~~~~~~-----~~~~g~~~eA~------------~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~  271 (496)
                      .||.+..+-     +...+++..|.            .+|.++..+++..++++|-....|+++|.+..+++++      
T Consensus       462 ~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~------  535 (777)
T KOG1128|consen  462 LLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE------  535 (777)
T ss_pred             HhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh------
Confidence            888775541     11122221111            3456677999999999999999999999999999999      


Q ss_pred             hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 010976          272 QTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP  343 (496)
Q Consensus       272 ~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p  343 (496)
                          +.|..+|.+.+.++|++..+|+|+..+|..+++                   -.+|-..+..|++.+-
T Consensus       536 ----q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~-------------------k~ra~~~l~EAlKcn~  584 (777)
T KOG1128|consen  536 ----QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK-------------------KKRAFRKLKEALKCNY  584 (777)
T ss_pred             ----HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh-------------------hHHHHHHHHHHhhcCC
Confidence                999999999999999999999999999999997                   3455556666666653

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.96  E-value=2.1e-08  Score=103.84  Aligned_cols=143  Identities=16%  Similarity=0.107  Sum_probs=135.6

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976          134 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA  213 (496)
Q Consensus       134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  213 (496)
                      ..++|.+.++..++.++..|++.+.+...|..+..+|+              -++|....+.++..++.....|.-+|.+
T Consensus        19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~--------------~~ea~~~vr~glr~d~~S~vCwHv~gl~   84 (700)
T KOG1156|consen   19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGK--------------KEEAYELVRLGLRNDLKSHVCWHVLGLL   84 (700)
T ss_pred             HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccc--------------hHHHHHHHHHHhccCcccchhHHHHHHH
Confidence            36889999999999999999999999999999999999              9999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH
Q 010976          214 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH  293 (496)
Q Consensus       214 ~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~  293 (496)
                      +..    ..+|++|+       ++|+.|+.++|+|.+.|..++.+..+++++          +.....-.+-+++.|.+.
T Consensus        85 ~R~----dK~Y~eai-------Kcy~nAl~~~~dN~qilrDlslLQ~QmRd~----------~~~~~tr~~LLql~~~~r  143 (700)
T KOG1156|consen   85 QRS----DKKYDEAI-------KCYRNALKIEKDNLQILRDLSLLQIQMRDY----------EGYLETRNQLLQLRPSQR  143 (700)
T ss_pred             Hhh----hhhHHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHHhhhhhH
Confidence            999    88888888       899999999999999999999999999999          999999999999999999


Q ss_pred             HHHHHHHHHHHHcchhHH
Q 010976          294 RAIYNLGTVLYGLAEDTL  311 (496)
Q Consensus       294 ~a~~~lg~~~~~~g~~~~  311 (496)
                      ..|..++..+...|+...
T Consensus       144 a~w~~~Avs~~L~g~y~~  161 (700)
T KOG1156|consen  144 ASWIGFAVAQHLLGEYKM  161 (700)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999998443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=2.4e-08  Score=99.04  Aligned_cols=117  Identities=24%  Similarity=0.191  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC----C-----------HHHHHHHHHHHHHHHHHc
Q 010976          157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----L-----------HDAFYNWAIAISDRAKMR  221 (496)
Q Consensus       157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~----~-----------~~a~~~lg~~~~~~~~~~  221 (496)
                      .-....|+.|++.|+              |..|+..|++|+..-..    +           ..++.|++.||..    +
T Consensus       209 ~~~ke~Gn~~fK~gk--------------~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lK----l  270 (397)
T KOG0543|consen  209 DRKKERGNVLFKEGK--------------FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLK----L  270 (397)
T ss_pred             HHHHHhhhHHHhhch--------------HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHh----h
Confidence            335667999999999              99999999999987321    1           2468999999999    9


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 010976          222 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT  301 (496)
Q Consensus       222 g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~  301 (496)
                      ++|.+|+       ..+.++|+++|+|..++|+.|.++..+|++          +.|+..|++|++++|+|..+...|..
T Consensus       271 ~~~~~Ai-------~~c~kvLe~~~~N~KALyRrG~A~l~~~e~----------~~A~~df~ka~k~~P~Nka~~~el~~  333 (397)
T KOG0543|consen  271 KEYKEAI-------ESCNKVLELDPNNVKALYRRGQALLALGEY----------DLARDDFQKALKLEPSNKAARAELIK  333 (397)
T ss_pred             hhHHHHH-------HHHHHHHhcCCCchhHHHHHHHHHHhhccH----------HHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            9999888       899999999999999999999999999999          99999999999999999999988888


Q ss_pred             HHHHcch
Q 010976          302 VLYGLAE  308 (496)
Q Consensus       302 ~~~~~g~  308 (496)
                      +-.+..+
T Consensus       334 l~~k~~~  340 (397)
T KOG0543|consen  334 LKQKIRE  340 (397)
T ss_pred             HHHHHHH
Confidence            7666554

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.96  E-value=1.4e-08  Score=80.21  Aligned_cols=99  Identities=29%  Similarity=0.396  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH
Q 010976          206 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA  285 (496)
Q Consensus       206 a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A  285 (496)
                      +++++|.++..    .|++++|+       ..++++++..|.+..+++.+|.++...|++          ++|+..|+++
T Consensus         2 ~~~~~a~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~   60 (100)
T cd00189           2 ALLNLGNLYYK----LGDYDEAL-------EYYEKALELDPDNADAYYNLAAAYYKLGKY----------EEALEDYEKA   60 (100)
T ss_pred             HHHHHHHHHHH----HhcHHHHH-------HHHHHHHhcCCccHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Confidence            57889999999    99999999       899999999999999999999999999999          9999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976          286 IQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  344 (496)
Q Consensus       286 l~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~  344 (496)
                      +.+.|.+..++..+|.++...|+                   +..+..++.+++...|.
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          61 LELDPDNAKAYYNLGLAYYKLGK-------------------YEEALEAYEKALELDPN  100 (100)
T ss_pred             HhCCCcchhHHHHHHHHHHHHHh-------------------HHHHHHHHHHHHccCCC
Confidence            99999999999999999999998                   78888899998887763

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=1.8e-08  Score=99.81  Aligned_cols=127  Identities=17%  Similarity=0.145  Sum_probs=110.2

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHH
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPED---------------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKY  193 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~---------------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  193 (496)
                      +..+++.|+|..|+..|++|+..-...               ..++.|++.+|.++++              |.+|++.+
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~--------------~~~Ai~~c  280 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKE--------------YKEAIESC  280 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhh--------------HHHHHHHH
Confidence            455788999999999999998864321               3478899999999999              99999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhh
Q 010976          194 DEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQT  273 (496)
Q Consensus       194 ~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~  273 (496)
                      .++|.++|+|..++|..|.++..    +|+++.|+       ..|+++++++|+|-.+...|..+-.+..++        
T Consensus       281 ~kvLe~~~~N~KALyRrG~A~l~----~~e~~~A~-------~df~ka~k~~P~Nka~~~el~~l~~k~~~~--------  341 (397)
T KOG0543|consen  281 NKVLELDPNNVKALYRRGQALLA----LGEYDLAR-------DDFQKALKLEPSNKAARAELIKLKQKIREY--------  341 (397)
T ss_pred             HHHHhcCCCchhHHHHHHHHHHh----hccHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHHHHH--------
Confidence            99999999999999999999999    99999999       899999999999999999999988887776        


Q ss_pred             hHHHHHHHHHHHHHhc
Q 010976          274 IVRTAISKFRAAIQLQ  289 (496)
Q Consensus       274 ~~~~Ai~~~~~Al~l~  289 (496)
                       .+...+.|.+.+..-
T Consensus       342 -~~kekk~y~~mF~k~  356 (397)
T KOG0543|consen  342 -EEKEKKMYANMFAKL  356 (397)
T ss_pred             -HHHHHHHHHHHhhcc
Confidence             144466777776653

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.93  E-value=5.7e-08  Score=85.82  Aligned_cols=135  Identities=16%  Similarity=0.062  Sum_probs=111.8

Q ss_pred             hhcHHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHH
Q 010976          111 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLE  187 (496)
Q Consensus       111 ~~~~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~  187 (496)
                      ..+...|-..|..++...     ..++...+...++..+..+|+.   ..+...+|.+++..|+              ++
T Consensus         5 ~~~~~~a~~~y~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~--------------~~   65 (145)
T PF09976_consen    5 QQQAEQASALYEQALQAL-----QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGD--------------YD   65 (145)
T ss_pred             HHHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCC--------------HH
Confidence            344555666666666443     3688888999999999999998   6778889999999999              99


Q ss_pred             HHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 010976          188 EACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA  264 (496)
Q Consensus       188 ~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~  264 (496)
                      +|+..|+.++...|+.   ..+.++|+.++..    .|++++|+       ..++. +.-.+-.+.++..+|.+|...|+
T Consensus        66 ~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~----~~~~d~Al-------~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~  133 (145)
T PF09976_consen   66 EAKAALEKALANAPDPELKPLARLRLARILLQ----QGQYDEAL-------ATLQQ-IPDEAFKALAAELLGDIYLAQGD  133 (145)
T ss_pred             HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH----cCCHHHHH-------HHHHh-ccCcchHHHHHHHHHHHHHHCCC
Confidence            9999999999988664   4588999999999    99999999       55544 34445567788999999999999


Q ss_pred             cchHHHhhhhHHHHHHHHHHHH
Q 010976          265 IVPAREKQTIVRTAISKFRAAI  286 (496)
Q Consensus       265 ~~~A~~~~~~~~~Ai~~~~~Al  286 (496)
                      +          ++|+..|++||
T Consensus       134 ~----------~~A~~~y~~Al  145 (145)
T PF09976_consen  134 Y----------DEARAAYQKAL  145 (145)
T ss_pred             H----------HHHHHHHHHhC
Confidence            9          99999999985

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.87  E-value=3e-07  Score=95.35  Aligned_cols=175  Identities=11%  Similarity=-0.002  Sum_probs=130.7

Q ss_pred             ChhhhhhcHHHHHHHHHHhhccchhh----------hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCC
Q 010976          106 TPHQLAEQNNAAMELINSVTGVDEEG----------RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSL  175 (496)
Q Consensus       106 ~~~~~~~~~~~A~~~~~~~l~~~~~~----------~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~  175 (496)
                      ..+...+.++-+...|..++..+..-          ....|..+.-...+++++...|.....|...+..++..|+    
T Consensus       524 ~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agd----  599 (913)
T KOG0495|consen  524 QSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGD----  599 (913)
T ss_pred             HHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCC----
Confidence            33455666777777787777766210          1123777788888999999999999999999999999999    


Q ss_pred             CCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH------------------------
Q 010976          176 DSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW------------------------  231 (496)
Q Consensus       176 ~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~------------------------  231 (496)
                                ...|...+.+|++.+|++-++|+.--.+.+.    ..+++.|...|                        
T Consensus       600 ----------v~~ar~il~~af~~~pnseeiwlaavKle~e----n~e~eraR~llakar~~sgTeRv~mKs~~~er~ld  665 (913)
T KOG0495|consen  600 ----------VPAARVILDQAFEANPNSEEIWLAAVKLEFE----NDELERARDLLAKARSISGTERVWMKSANLERYLD  665 (913)
T ss_pred             ----------cHHHHHHHHHHHHhCCCcHHHHHHHHHHhhc----cccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhh
Confidence                      9999999999999999998888877666666    67777776554                        


Q ss_pred             --HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          232 --KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       232 --~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                        ++|+..++++|+..|+++..|..+|.++.++++.          +.|...|..-++.-|+.+..|..|+.+--..|.
T Consensus       666 ~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i----------e~aR~aY~~G~k~cP~~ipLWllLakleEk~~~  734 (913)
T KOG0495|consen  666 NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI----------EMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ  734 (913)
T ss_pred             hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH----------HHHHHHHHhccccCCCCchHHHHHHHHHHHhcc
Confidence              3366777778888888888888888888888777          666666666666666666666666666655554

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.87  E-value=1.8e-07  Score=89.81  Aligned_cols=159  Identities=15%  Similarity=0.071  Sum_probs=115.6

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC---HHH
Q 010976          133 SRQRILTFAAKRYANAIERNPEDYDAL---YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDA  206 (496)
Q Consensus       133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~---~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~---~~a  206 (496)
                      ...|+|++|+..|++++...|..+.+.   +.+|.+|++.++              +++|+..|++.++++|++   ..+
T Consensus        43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~--------------y~~A~~~~e~fi~~~P~~~~~~~a  108 (243)
T PRK10866         43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD--------------LPLAQAAIDRFIRLNPTHPNIDYV  108 (243)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhCcCCCchHHH
Confidence            346999999999999999999987654   899999999999              999999999999998886   467


Q ss_pred             HHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHccCcchH----
Q 010976          207 FYNWAIAISDRAKMRGR-----------TKEAEELWKQATKNYEKAVQLNWNSPQ---ALNNWGLALQELSAIVPA----  268 (496)
Q Consensus       207 ~~~lg~~~~~~~~~~g~-----------~~eA~~~~~~A~~~~~~Al~l~P~~~~---a~~~lg~~l~~~g~~~~A----  268 (496)
                      ++.+|.++..    +++           .+.-...-.+|+..|++.++..|++..   +...+..+..++.+.+-.    
T Consensus       109 ~Y~~g~~~~~----~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~  184 (243)
T PRK10866        109 LYMRGLTNMA----LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEY  184 (243)
T ss_pred             HHHHHHhhhh----cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999988755    331           111112224566899999999998642   222222222222211110    


Q ss_pred             HHhhhhHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcchh
Q 010976          269 REKQTIVRTAISKFRAAIQLQFDF---HRAIYNLGTVLYGLAED  309 (496)
Q Consensus       269 ~~~~~~~~~Ai~~~~~Al~l~P~~---~~a~~~lg~~~~~~g~~  309 (496)
                      +.+.|.+..|+.-++.+++.-|+.   .++++.++.+|..+|..
T Consensus       185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~  228 (243)
T PRK10866        185 YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN  228 (243)
T ss_pred             HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh
Confidence            223344499999999999988765   57899999999999973

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.86  E-value=3.8e-07  Score=96.30  Aligned_cols=199  Identities=18%  Similarity=0.137  Sum_probs=122.9

Q ss_pred             hhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 010976          109 QLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST  178 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~  178 (496)
                      ...|+++.|++.+.......          +..+.++|++++|...|...|..||++..-+..+..++.....       
T Consensus        15 ~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~-------   87 (517)
T PF12569_consen   15 EEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQ-------   87 (517)
T ss_pred             HHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcc-------
Confidence            45667777777665433322          4445566777777777777777777777777666666533221       


Q ss_pred             CcchhhhHHHHHHHHHHHHHhCCCCHHH------------HHHHHHHHHHHHHHcC-------------CHHHHHHHHHH
Q 010976          179 SPSKDALLEEACKKYDEATRLCPTLHDA------------FYNWAIAISDRAKMRG-------------RTKEAEELWKQ  233 (496)
Q Consensus       179 ~~~~~~~~~~A~~~~~~Al~l~P~~~~a------------~~~lg~~~~~~~~~~g-------------~~~eA~~~~~~  233 (496)
                        ......+.-...|++.....|....+            +-.+...|.......|             +..++ ....+
T Consensus        88 --~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~-~~i~~  164 (517)
T PF12569_consen   88 --LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKA-AIIES  164 (517)
T ss_pred             --cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHH-HHHHH
Confidence              00011566666777666665542211            1111122211100011             01110 11122


Q ss_pred             HHHHHHHHHhcC------------CCC--HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHH
Q 010976          234 ATKNYEKAVQLN------------WNS--PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL  299 (496)
Q Consensus       234 A~~~~~~Al~l~------------P~~--~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~l  299 (496)
                      -+..|...++.+            |..  ..+++.++..|...|++          ++|+.+.++||++.|..++.++..
T Consensus       165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~----------~~Al~~Id~aI~htPt~~ely~~K  234 (517)
T PF12569_consen  165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDY----------EKALEYIDKAIEHTPTLVELYMTK  234 (517)
T ss_pred             HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHhcCCCcHHHHHHH
Confidence            223333333221            111  34678899999999999          999999999999999999999999


Q ss_pred             HHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          300 GTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       300 g~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                      |.+|.+.|+                   +..|..+++.|..+|+.+.
T Consensus       235 arilKh~G~-------------------~~~Aa~~~~~Ar~LD~~DR  262 (517)
T PF12569_consen  235 ARILKHAGD-------------------LKEAAEAMDEARELDLADR  262 (517)
T ss_pred             HHHHHHCCC-------------------HHHHHHHHHHHHhCChhhH
Confidence            999999999                   8899999999999999887

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.86  E-value=9.9e-09  Score=77.26  Aligned_cols=65  Identities=25%  Similarity=0.324  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHH
Q 010976          208 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ  287 (496)
Q Consensus       208 ~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~  287 (496)
                      +.+|..+..    .|++++|+       ..|+++++.+|+++.+++.+|.++..+|++          ++|+..|+++++
T Consensus         1 ~~~a~~~~~----~g~~~~A~-------~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~a~~   59 (65)
T PF13432_consen    1 YALARALYQ----QGDYDEAI-------AAFEQALKQDPDNPEAWYLLGRILYQQGRY----------DEALAYYERALE   59 (65)
T ss_dssp             HHHHHHHHH----CTHHHHHH-------HHHHHHHCCSTTHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHH
T ss_pred             ChHHHHHHH----cCCHHHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHH
Confidence            467888999    99999999       899999999999999999999999999999          999999999999


Q ss_pred             hcCCCH
Q 010976          288 LQFDFH  293 (496)
Q Consensus       288 l~P~~~  293 (496)
                      ++|+++
T Consensus        60 ~~P~~p   65 (65)
T PF13432_consen   60 LDPDNP   65 (65)
T ss_dssp             HSTT-H
T ss_pred             HCcCCC
Confidence            999975

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.85  E-value=7.3e-09  Score=82.39  Aligned_cols=80  Identities=26%  Similarity=0.302  Sum_probs=71.1

Q ss_pred             hccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPE--DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  212 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~--~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  212 (496)
                      +|+++.|+..|+++++.+|.  +...++.+|.+|+++|+              +++|+..+++ +..+|.+...++.+|.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~--------------y~~A~~~~~~-~~~~~~~~~~~~l~a~   66 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK--------------YEEAIELLQK-LKLDPSNPDIHYLLAR   66 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH--------------HHHHHHHHHC-HTHHHCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC--------------HHHHHHHHHH-hCCCCCCHHHHHHHHH
Confidence            58999999999999999995  56778889999999999              9999999999 8899999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHH
Q 010976          213 AISDRAKMRGRTKEAEELWKQ  233 (496)
Q Consensus       213 ~~~~~~~~~g~~~eA~~~~~~  233 (496)
                      ++..    +|++++|++.|++
T Consensus        67 ~~~~----l~~y~eAi~~l~~   83 (84)
T PF12895_consen   67 CLLK----LGKYEEAIKALEK   83 (84)
T ss_dssp             HHHH----TT-HHHHHHHHHH
T ss_pred             HHHH----hCCHHHHHHHHhc
Confidence            9999    9999999955544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.85  E-value=1.1e-08  Score=77.09  Aligned_cols=65  Identities=29%  Similarity=0.472  Sum_probs=59.9

Q ss_pred             HHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 010976          160 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE  239 (496)
Q Consensus       160 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~  239 (496)
                      +.+|..++..|+              +++|+..|+++++.+|++..+++.+|.++..    +|++++|+       ..|+
T Consensus         1 ~~~a~~~~~~g~--------------~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~----~g~~~~A~-------~~~~   55 (65)
T PF13432_consen    1 YALARALYQQGD--------------YDEAIAAFEQALKQDPDNPEAWYLLGRILYQ----QGRYDEAL-------AYYE   55 (65)
T ss_dssp             HHHHHHHHHCTH--------------HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH----TT-HHHHH-------HHHH
T ss_pred             ChHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHH
Confidence            467899999999              9999999999999999999999999999999    99999999       8999


Q ss_pred             HHHhcCCCCH
Q 010976          240 KAVQLNWNSP  249 (496)
Q Consensus       240 ~Al~l~P~~~  249 (496)
                      ++++++|+++
T Consensus        56 ~a~~~~P~~p   65 (65)
T PF13432_consen   56 RALELDPDNP   65 (65)
T ss_dssp             HHHHHSTT-H
T ss_pred             HHHHHCcCCC
Confidence            9999999875

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.83  E-value=1.2e-08  Score=100.31  Aligned_cols=187  Identities=18%  Similarity=0.132  Sum_probs=130.1

Q ss_pred             CCCChhhhhhcHHHHHHHHHHhhcc------c----------hhhhHhhccHHHHHHHHHHHHHhCC------CCHHHHH
Q 010976          103 QGNTPHQLAEQNNAAMELINSVTGV------D----------EEGRSRQRILTFAAKRYANAIERNP------EDYDALY  160 (496)
Q Consensus       103 ~~~~~~~~~~~~~~A~~~~~~~l~~------~----------~~~~~~~g~~~~Ai~~~~~al~~~P------~~~~a~~  160 (496)
                      ....++...++|++|+++-..-+.+      .          +..+...|.|++|+.++.+-+.+.-      ....++|
T Consensus        60 QLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlY  139 (639)
T KOG1130|consen   60 QLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALY  139 (639)
T ss_pred             HhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHh
Confidence            3455566778888888764432221      1          2234456999999999988876542      2467999


Q ss_pred             HHHHHHHHhcCCCCCCCC------CcchhhhHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHcCCHHHHH
Q 010976          161 NWALVLQESADNVSLDST------SPSKDALLEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKEAE  228 (496)
Q Consensus       161 ~lg~~~~~~~~~~~~~~~------~~~~~~~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~~~~~~~~~g~~~eA~  228 (496)
                      |+|++|...|+.......      ....-..++.|+++|..-|++-..      .-.++-+||+.|+.    +|+|+.|+
T Consensus       140 NlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYl----LGdf~~ai  215 (639)
T KOG1130|consen  140 NLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYL----LGDFDQAI  215 (639)
T ss_pred             hhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeee----eccHHHHH
Confidence            999999999985332221      233456788999999998887433      33578899999998    99999999


Q ss_pred             HHHHHHHH----HHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc----C--CCHHHHHH
Q 010976          229 ELWKQATK----NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ----F--DFHRAIYN  298 (496)
Q Consensus       229 ~~~~~A~~----~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~----P--~~~~a~~~  298 (496)
                      ...++=+.    .=.+|-     .-.++.|+|.++.-+|++          +.|+++|++++.+.    -  -.+...|.
T Consensus       216 ~~H~~RL~ia~efGDrAa-----eRRA~sNlgN~hiflg~f----------e~A~ehYK~tl~LAielg~r~vEAQscYS  280 (639)
T KOG1130|consen  216 HFHKLRLEIAQEFGDRAA-----ERRAHSNLGNCHIFLGNF----------ELAIEHYKLTLNLAIELGNRTVEAQSCYS  280 (639)
T ss_pred             HHHHHHHHHHHHhhhHHH-----HHHhhcccchhhhhhccc----------HhHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            54433222    222221     246899999999999999          88998888876552    2  23456788


Q ss_pred             HHHHHHHcch
Q 010976          299 LGTVLYGLAE  308 (496)
Q Consensus       299 lg~~~~~~g~  308 (496)
                      ||..|.-+.+
T Consensus       281 LgNtytll~e  290 (639)
T KOG1130|consen  281 LGNTYTLLKE  290 (639)
T ss_pred             hhhHHHHHHH
Confidence            8888887776

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.81  E-value=2.4e-07  Score=86.65  Aligned_cols=160  Identities=21%  Similarity=0.183  Sum_probs=112.8

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH---H
Q 010976          132 RSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---D  205 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~---~  205 (496)
                      .+..|+|.+|+..|++++...|..   ..+.+.+|.+++..|+              +.+|+..|++.++..|++.   .
T Consensus        15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~--------------y~~A~~~~~~fi~~yP~~~~~~~   80 (203)
T PF13525_consen   15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGD--------------YEEAIAAYERFIKLYPNSPKADY   80 (203)
T ss_dssp             HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCCcchhh
Confidence            445799999999999999998875   6889999999999999              9999999999999999865   6


Q ss_pred             HHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHccCcchH----HHhhhh
Q 010976          206 AFYNWAIAISDRAKMRGRT----KEAEELWKQATKNYEKAVQLNWNSPQA---LNNWGLALQELSAIVPA----REKQTI  274 (496)
Q Consensus       206 a~~~lg~~~~~~~~~~g~~----~eA~~~~~~A~~~~~~Al~l~P~~~~a---~~~lg~~l~~~g~~~~A----~~~~~~  274 (496)
                      +++.+|.++..    +.+-    +.-.....+|+..|+..+...|++..+   ...+..+-..+.+.+-.    +-+.|.
T Consensus        81 A~Y~~g~~~~~----~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~  156 (203)
T PF13525_consen   81 ALYMLGLSYYK----QIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGK  156 (203)
T ss_dssp             HHHHHHHHHHH----HHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHHHHHH----hCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            89999999877    3211    222344567779999999999986432   22222222111111100    234444


Q ss_pred             HHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcchh
Q 010976          275 VRTAISKFRAAIQLQFDFH---RAIYNLGTVLYGLAED  309 (496)
Q Consensus       275 ~~~Ai~~~~~Al~l~P~~~---~a~~~lg~~~~~~g~~  309 (496)
                      +..|+..|+.+++.-|+..   .++..++.+|..+|..
T Consensus       157 y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~  194 (203)
T PF13525_consen  157 YKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLK  194 (203)
T ss_dssp             HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCCh
Confidence            4999999999999999875   6788899999999973

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.80  E-value=9.9e-09  Score=98.81  Aligned_cols=104  Identities=19%  Similarity=0.127  Sum_probs=95.4

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY  208 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~  208 (496)
                      +..++++|.|++||.||.+++..+|.++..+.|++..|+++.+              |..|...+..|+.++-.+..+|.
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~--------------FA~AE~DC~~AiaLd~~Y~KAYS  169 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKS--------------FAQAEEDCEAAIALDKLYVKAYS  169 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHH--------------HHHHHHhHHHHHHhhHHHHHHHH
Confidence            5558899999999999999999999999999999999999999              99999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976          209 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL  257 (496)
Q Consensus       209 ~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  257 (496)
                      .+|.+...    +|...+|.       +.|+.+|++.|++-+..-.++.
T Consensus       170 RR~~AR~~----Lg~~~EAK-------kD~E~vL~LEP~~~ELkK~~a~  207 (536)
T KOG4648|consen  170 RRMQARES----LGNNMEAK-------KDCETVLALEPKNIELKKSLAR  207 (536)
T ss_pred             HHHHHHHH----HhhHHHHH-------HhHHHHHhhCcccHHHHHHHHH
Confidence            99999999    99999998       8999999999997766554443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.79  E-value=9.2e-09  Score=101.14  Aligned_cols=152  Identities=18%  Similarity=0.146  Sum_probs=107.2

Q ss_pred             hhHhhccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCC---
Q 010976          131 GRSRQRILTFAAKRYANAIERN------PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP---  201 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~------P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P---  201 (496)
                      +++.+++|.+|+++-..-|.+.      -..+.+--|||+++..+|.              |++|+.++.+-|.+.-   
T Consensus        64 AyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~--------------fdeA~~cc~rhLd~areLg  129 (639)
T KOG1130|consen   64 AYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGA--------------FDEALTCCFRHLDFARELG  129 (639)
T ss_pred             hhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcc--------------cchHHHHHHHHhHHHHHHh
Confidence            3445556666655543322221      1123334456666666666              9999999998877632   


Q ss_pred             ---CCHHHHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHHHHHHhcCCC------CHHHHHHHHHHH
Q 010976          202 ---TLHDAFYNWAIAISDRAKMRGR-------------TKEAEELWKQATKNYEKAVQLNWN------SPQALNNWGLAL  259 (496)
Q Consensus       202 ---~~~~a~~~lg~~~~~~~~~~g~-------------~~eA~~~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l  259 (496)
                         ....++||+|.+|..    .|+             .+++...++.|++.|..-|++.-.      ...++.|||..|
T Consensus       130 Drv~e~RAlYNlgnvYha----kGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTy  205 (639)
T KOG1130|consen  130 DRVLESRALYNLGNVYHA----KGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTY  205 (639)
T ss_pred             HHHhhhHHHhhhhhhhhh----cccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCcee
Confidence               256899999999988    554             256677889999999988877543      345788899999


Q ss_pred             HHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcchhH
Q 010976          260 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDF------HRAIYNLGTVLYGLAEDT  310 (496)
Q Consensus       260 ~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~------~~a~~~lg~~~~~~g~~~  310 (496)
                      +-+|++          ++||.+-+.-|.+...+      -.++.|||.++.-+|+..
T Consensus       206 YlLGdf----------~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe  252 (639)
T KOG1130|consen  206 YLLGDF----------DQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFE  252 (639)
T ss_pred             eeeccH----------HHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccH
Confidence            999998          99998888877775433      468999999999999743

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.78  E-value=1.4e-08  Score=80.77  Aligned_cols=80  Identities=26%  Similarity=0.295  Sum_probs=71.2

Q ss_pred             hhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010976          184 ALLEEACKKYDEATRLCPT--LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE  261 (496)
Q Consensus       184 ~~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~  261 (496)
                      ++++.|+..|+++++.+|.  +...++.+|.+|+.    .|++++|+       ..+++ +..++.+...++.+|.++.+
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~----~~~y~~A~-------~~~~~-~~~~~~~~~~~~l~a~~~~~   70 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ----QGKYEEAI-------ELLQK-LKLDPSNPDIHYLLARCLLK   70 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH----TTHHHHHH-------HHHHC-HTHHHCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----CCCHHHHH-------HHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence            4499999999999999995  56778889999999    99999999       77777 88888899999999999999


Q ss_pred             ccCcchHHHhhhhHHHHHHHHHHH
Q 010976          262 LSAIVPAREKQTIVRTAISKFRAA  285 (496)
Q Consensus       262 ~g~~~~A~~~~~~~~~Ai~~~~~A  285 (496)
                      +|++          ++|+.+|+++
T Consensus        71 l~~y----------~eAi~~l~~~   84 (84)
T PF12895_consen   71 LGKY----------EEAIKALEKA   84 (84)
T ss_dssp             TT-H----------HHHHHHHHHH
T ss_pred             hCCH----------HHHHHHHhcC
Confidence            9999          9999999875

>PRK15331 chaperone protein SicA; Provisional

Probab=98.78  E-value=8.7e-08  Score=84.47  Aligned_cols=111  Identities=15%  Similarity=0.004  Sum_probs=100.4

Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHH
Q 010976          148 AIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEA  227 (496)
Q Consensus       148 al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA  227 (496)
                      +..+.++..+..|..|.-++..|+              +++|...|+-...++|.+++.++.||.++..    +++|++|
T Consensus        29 l~gis~~~le~iY~~Ay~~y~~Gk--------------~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~----~k~y~~A   90 (165)
T PRK15331         29 VHGIPQDMMDGLYAHAYEFYNQGR--------------LDEAETFFRFLCIYDFYNPDYTMGLAAVCQL----KKQFQKA   90 (165)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH----HHHHHHH
Confidence            444566777889999999999999              9999999999999999999999999999988    8888888


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHH
Q 010976          228 EELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR  294 (496)
Q Consensus       228 ~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~  294 (496)
                      +       ..|..|..++++++...+..|.|+..+|+.          ..|+.+|..++. .|.+..
T Consensus        91 i-------~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~----------~~A~~~f~~a~~-~~~~~~  139 (165)
T PRK15331         91 C-------DLYAVAFTLLKNDYRPVFFTGQCQLLMRKA----------AKARQCFELVNE-RTEDES  139 (165)
T ss_pred             H-------HHHHHHHHcccCCCCccchHHHHHHHhCCH----------HHHHHHHHHHHh-CcchHH
Confidence            7       899999999999999999999999999999          999999999998 455443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.78  E-value=2.4e-08  Score=96.23  Aligned_cols=109  Identities=18%  Similarity=0.112  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010976          159 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY  238 (496)
Q Consensus       159 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~  238 (496)
                      +...|+-|+.+|+              |++||.||.+++.++|.++..+.|++.+|+.    +.+|..|.       ..|
T Consensus       100 iKE~GN~yFKQgK--------------y~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk----~K~FA~AE-------~DC  154 (536)
T KOG4648|consen  100 IKERGNTYFKQGK--------------YEEAIDCYSTAIAVYPHNPVYHINRALAYLK----QKSFAQAE-------EDC  154 (536)
T ss_pred             HHHhhhhhhhccc--------------hhHHHHHhhhhhccCCCCccchhhHHHHHHH----HHHHHHHH-------HhH
Confidence            4567888888888              9999999999999999999999999999999    88888888       899


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010976          239 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV  302 (496)
Q Consensus       239 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~  302 (496)
                      ..|+.+|-.+..+|...|.+-..+|..          .+|...|+.+|++.|++.+....++.+
T Consensus       155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~----------~EAKkD~E~vL~LEP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  155 EAAIALDKLYVKAYSRRMQARESLGNN----------MEAKKDCETVLALEPKNIELKKSLARI  208 (536)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhH----------HHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence            999999999999999999999999999          999999999999999987765555544

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.77  E-value=2.7e-07  Score=89.41  Aligned_cols=106  Identities=18%  Similarity=0.228  Sum_probs=94.9

Q ss_pred             CHHHHHHHHHHH-HHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 010976          155 DYDALYNWALVL-QESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEEL  230 (496)
Q Consensus       155 ~~~a~~~lg~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~  230 (496)
                      +...+|..+..+ +..|+              |++|+..|++.++..|++   +.+++.+|.+|+.    .|++++|+  
T Consensus       141 ~e~~~Y~~A~~l~~~~~~--------------y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~----~g~~~~A~--  200 (263)
T PRK10803        141 DANTDYNAAIALVQDKSR--------------QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN----KGKKDDAA--  200 (263)
T ss_pred             CHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH----cCCHHHHH--
Confidence            357788888876 55788              999999999999999997   5899999999999    99999999  


Q ss_pred             HHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHH
Q 010976          231 WKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA  295 (496)
Q Consensus       231 ~~~A~~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a  295 (496)
                           ..|++++...|+   .+.+++.+|.++..+|++          ++|+..|+++++..|+...+
T Consensus       201 -----~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~----------~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        201 -----YYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT----------AKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             -----HHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCCHHH
Confidence                 788888877776   688999999999999999          99999999999999998754

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.77  E-value=7.5e-08  Score=86.44  Aligned_cols=107  Identities=23%  Similarity=0.267  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010976          159 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH-----DAFYNWAIAISDRAKMRGRTKEAEELWKQ  233 (496)
Q Consensus       159 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~-----~a~~~lg~~~~~~~~~~g~~~eA~~~~~~  233 (496)
                      +..-|+-++..|+              |++|...|..||.++|...     ..|.|+|.++..    ++.++.|+     
T Consensus        98 lK~EGN~~F~ngd--------------yeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK----l~k~e~aI-----  154 (271)
T KOG4234|consen   98 LKKEGNELFKNGD--------------YEEANSKYQEALESCPSTSTEERSILYSNRAAALIK----LRKWESAI-----  154 (271)
T ss_pred             HHHHHHHhhhccc--------------HHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH----hhhHHHHH-----
Confidence            3445777888888              9999999999999999854     468889999998    88888888     


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010976          234 ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG  300 (496)
Q Consensus       234 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg  300 (496)
                        ..+.++|+++|.+..++.+++.+|.++.++          ++|+..|.+.++++|....+.-.+.
T Consensus       155 --~dcsKaiel~pty~kAl~RRAeayek~ek~----------eealeDyKki~E~dPs~~ear~~i~  209 (271)
T KOG4234|consen  155 --EDCSKAIELNPTYEKALERRAEAYEKMEKY----------EEALEDYKKILESDPSRREAREAIA  209 (271)
T ss_pred             --HHHHhhHhcCchhHHHHHHHHHHHHhhhhH----------HHHHHHHHHHHHhCcchHHHHHHHH
Confidence              899999999999999999999999999999          9999999999999999765544433

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.72  E-value=1.9e-07  Score=92.00  Aligned_cols=182  Identities=15%  Similarity=0.168  Sum_probs=134.4

Q ss_pred             hcHHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHhcCCCCCCCCCcchhhh
Q 010976          112 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNP--ED----YDALYNWALVLQESADNVSLDSTSPSKDAL  185 (496)
Q Consensus       112 ~~~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P--~~----~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~  185 (496)
                      .+++.|.++|.++-..    +...+++++|..+|.++....-  ++    ..++...+.+|.+. +              
T Consensus        29 ~~~e~Aa~~y~~Aa~~----fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~--------------   89 (282)
T PF14938_consen   29 PDYEEAADLYEKAANC----FKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-D--------------   89 (282)
T ss_dssp             HHHHHHHHHHHHHHHH----HHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-T--------------
T ss_pred             CCHHHHHHHHHHHHHH----HHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-C--------------
Confidence            5889999999877643    3456899999999999977642  11    34566667776665 7              


Q ss_pred             HHHHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010976          186 LEEACKKYDEATRLC--PT----LHDAFYNWAIAISDRAKMR-GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA  258 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~--P~----~~~a~~~lg~~~~~~~~~~-g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  258 (496)
                      +++|+.+|++|+.+.  -+    -+.++.++|.+|..    . |++++|++.|++|++.|+.-= ..-....++.++|.+
T Consensus        90 ~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~----~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l  164 (282)
T PF14938_consen   90 PDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE----QLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL  164 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC----TT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence            999999999999982  22    24678999999988    8 999999999999999888632 001135678899999


Q ss_pred             HHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHH
Q 010976          259 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-------FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQS  331 (496)
Q Consensus       259 l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~-------~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A  331 (496)
                      +..+|+|          ++|+..|+++....-+       -...+...+.|++..|+                   +..|
T Consensus       165 ~~~l~~y----------~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D-------------------~v~A  215 (282)
T PF14938_consen  165 YARLGRY----------EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGD-------------------YVAA  215 (282)
T ss_dssp             HHHTT-H----------HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT--------------------HHHH
T ss_pred             HHHhCCH----------HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCC-------------------HHHH
Confidence            9999999          9999999999875321       12345677888888887                   6788


Q ss_pred             HHHHHHHHhcCCcHH
Q 010976          332 AIYIAAAHALKPSYS  346 (496)
Q Consensus       332 ~~~~~~a~~l~p~~~  346 (496)
                      ...+++....+|.+.
T Consensus       216 ~~~~~~~~~~~~~F~  230 (282)
T PF14938_consen  216 RKALERYCSQDPSFA  230 (282)
T ss_dssp             HHHHHHHGTTSTTST
T ss_pred             HHHHHHHHhhCCCCC
Confidence            888888888888655

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.70  E-value=5e-07  Score=85.84  Aligned_cols=148  Identities=20%  Similarity=0.153  Sum_probs=125.2

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976          133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  212 (496)
Q Consensus       133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  212 (496)
                      .+..+|..||+++..-.+.+|.+-..+..||.+|+...+              |..|..+|++.-.+.|......+..+.
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~--------------f~~AA~CYeQL~ql~P~~~qYrlY~AQ   86 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQE--------------FALAAECYEQLGQLHPELEQYRLYQAQ   86 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence            345788999999999999999999999999999999999              999999999999999998888777788


Q ss_pred             HHHHHHHHcCCHHHHHHHHH----------------HHHHH-------HHHHHhcCC--CCHHHHHHHHHHHHHccCcch
Q 010976          213 AISDRAKMRGRTKEAEELWK----------------QATKN-------YEKAVQLNW--NSPQALNNWGLALQELSAIVP  267 (496)
Q Consensus       213 ~~~~~~~~~g~~~eA~~~~~----------------~A~~~-------~~~Al~l~P--~~~~a~~~lg~~l~~~g~~~~  267 (496)
                      .++.    .+.+.+|+....                .||.+       .+..++.-|  +.+...+|.|.++++.|++  
T Consensus        87 SLY~----A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqy--  160 (459)
T KOG4340|consen   87 SLYK----ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQY--  160 (459)
T ss_pred             HHHH----hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccH--
Confidence            8888    788887775431                12221       122233334  5678899999999999999  


Q ss_pred             HHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          268 AREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       268 A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                              ++|++.|+.|++...-++..-||++.+++..++
T Consensus       161 --------EaAvqkFqaAlqvsGyqpllAYniALaHy~~~q  193 (459)
T KOG4340|consen  161 --------EAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQ  193 (459)
T ss_pred             --------HHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhh
Confidence                    999999999999999999999999999999998

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.67  E-value=2.7e-07  Score=82.93  Aligned_cols=103  Identities=21%  Similarity=0.180  Sum_probs=90.6

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPEDY-----DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL  203 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~-----~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~  203 (496)
                      +..++..|+|.+|..-|..||.+.|..+     ..|.|+|.++.+++.              ++.||+.+.+||+++|.+
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k--------------~e~aI~dcsKaiel~pty  167 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRK--------------WESAIEDCSKAIELNPTY  167 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhh--------------HHHHHHHHHhhHhcCchh
Confidence            3446778999999999999999999764     467899999999999              999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010976          204 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG  256 (496)
Q Consensus       204 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  256 (496)
                      ..++..++.+|..    +.+|++|+       ..|.+.++.+|...++.-.+.
T Consensus       168 ~kAl~RRAeayek----~ek~eeal-------eDyKki~E~dPs~~ear~~i~  209 (271)
T KOG4234|consen  168 EKALERRAEAYEK----MEKYEEAL-------EDYKKILESDPSRREAREAIA  209 (271)
T ss_pred             HHHHHHHHHHHHh----hhhHHHHH-------HHHHHHHHhCcchHHHHHHHH
Confidence            9999999999999    88888888       899999999998766554443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.67  E-value=1.4e-06  Score=76.97  Aligned_cols=113  Identities=19%  Similarity=0.116  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHH
Q 010976          186 LEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS---PQALNNWGLAL  259 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~l  259 (496)
                      ...+...+++.+.-+|+.   ..+.+.+|.++..    .|++++|+       ..|++++...|+.   ..+..+|+.++
T Consensus        27 ~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~----~g~~~~A~-------~~l~~~~~~~~d~~l~~~a~l~LA~~~   95 (145)
T PF09976_consen   27 PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE----QGDYDEAK-------AALEKALANAPDPELKPLARLRLARIL   95 (145)
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence            888988999999999998   5678889999999    99999999       7888888777654   56889999999


Q ss_pred             HHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHH
Q 010976          260 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAH  339 (496)
Q Consensus       260 ~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~  339 (496)
                      ...|++          ++|+..++. +.-.+-.+.++..+|.+|...|+                   +..|...|++|+
T Consensus        96 ~~~~~~----------d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~-------------------~~~A~~~y~~Al  145 (145)
T PF09976_consen   96 LQQGQY----------DEALATLQQ-IPDEAFKALAAELLGDIYLAQGD-------------------YDEARAAYQKAL  145 (145)
T ss_pred             HHcCCH----------HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHhC
Confidence            999999          999999976 34445567788899999999999                   788888888764

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.66  E-value=6.4e-07  Score=99.62  Aligned_cols=64  Identities=9%  Similarity=-0.073  Sum_probs=42.1

Q ss_pred             hhhhhcHHHHHHHHHHhhccc-------hhhhHhhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcC
Q 010976          108 HQLAEQNNAAMELINSVTGVD-------EEGRSRQRILTFAAKRYANAIERN-PEDYDALYNWALVLQESAD  171 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~-------~~~~~~~g~~~~Ai~~~~~al~~~-P~~~~a~~~lg~~~~~~~~  171 (496)
                      +...|+.+.|...+......+       ..++.+.|++++|+..|++..+.. .-+...+..+...|...|+
T Consensus       269 y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~  340 (697)
T PLN03081        269 YSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL  340 (697)
T ss_pred             HHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            446788888888887654433       456677788888888887776543 1234566666666666666

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.65  E-value=7.7e-07  Score=86.27  Aligned_cols=113  Identities=17%  Similarity=0.148  Sum_probs=99.4

Q ss_pred             CHHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCcchHHHhhhhHHHH
Q 010976          203 LHDAFYNWAIAI-SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS---PQALNNWGLALQELSAIVPAREKQTIVRTA  278 (496)
Q Consensus       203 ~~~a~~~lg~~~-~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~~~A~~~~~~~~~A  278 (496)
                      +...+|..+..+ ..    .|+|++|+       ..|++.+...|++   +.+++.+|.+|+..|++          ++|
T Consensus       141 ~e~~~Y~~A~~l~~~----~~~y~~Ai-------~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~----------~~A  199 (263)
T PRK10803        141 DANTDYNAAIALVQD----KSRQDDAI-------VAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKK----------DDA  199 (263)
T ss_pred             CHHHHHHHHHHHHHh----cCCHHHHH-------HHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCH----------HHH
Confidence            457778888776 55    78999999       8999999999997   58999999999999999          999


Q ss_pred             HHHHHHHHHhcCC---CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Q 010976          279 ISKFRAAIQLQFD---FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV  355 (496)
Q Consensus       279 i~~~~~Al~l~P~---~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~~  355 (496)
                      +..|++++...|+   .+.+++.+|.++..+|+                   +..|..+|++.++..|+......+...+
T Consensus       200 ~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~-------------------~~~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        200 AYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD-------------------TAKAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             HHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            9999999998877   57899999999999998                   8899999999999999988776665554

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.65  E-value=1.3e-07  Score=95.92  Aligned_cols=69  Identities=22%  Similarity=0.331  Sum_probs=63.4

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHHHHcCCHHHH
Q 010976          151 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDA---FYNWAIAISDRAKMRGRTKEA  227 (496)
Q Consensus       151 ~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a---~~~lg~~~~~~~~~~g~~~eA  227 (496)
                      .+|+++++|+++|.+|+.+|+              |++|+.+|++||+++|++..+   |+|+|.+|..    +|++++|
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGr--------------yeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~----LGr~dEA  131 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGR--------------VKDALAQFETALELNPNPDEAQAAYYNKACCHAY----REEGKKA  131 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH----cCCHHHH
Confidence            479999999999999999999              999999999999999999865   9999999999    9999999


Q ss_pred             HHHHHHHHHH
Q 010976          228 EELWKQATKN  237 (496)
Q Consensus       228 ~~~~~~A~~~  237 (496)
                      +++|++|++.
T Consensus       132 la~LrrALel  141 (453)
T PLN03098        132 ADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHh
Confidence            9666666654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.64  E-value=7e-07  Score=75.69  Aligned_cols=96  Identities=24%  Similarity=0.176  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010976          157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFYNWAIAISDRAKMRGRTKEAEELWKQ  233 (496)
Q Consensus       157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~  233 (496)
                      .+++++|.++..+|+              .++|+.+|++++....+   ...++.++|.+|..    +|++++|+     
T Consensus         2 ~~~~~~A~a~d~~G~--------------~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~----LG~~deA~-----   58 (120)
T PF12688_consen    2 RALYELAWAHDSLGR--------------EEEAIPLYRRALAAGLSGADRRRALIQLASTLRN----LGRYDEAL-----   58 (120)
T ss_pred             chHHHHHHHHHhcCC--------------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH----cCCHHHHH-----
Confidence            578999999999999              99999999999998544   36789999999999    99999999     


Q ss_pred             HHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHH
Q 010976          234 ATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ  287 (496)
Q Consensus       234 A~~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~  287 (496)
                        ..+++++...|+   +..+...++.++...|++          ++|+..+-.++.
T Consensus        59 --~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~----------~eAl~~~l~~la  103 (120)
T PF12688_consen   59 --ALLEEALEEFPDDELNAALRVFLALALYNLGRP----------KEALEWLLEALA  103 (120)
T ss_pred             --HHHHHHHHHCCCccccHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHH
Confidence              788888888788   888999999999999999          999998888775

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.62  E-value=4.2e-06  Score=78.31  Aligned_cols=171  Identities=26%  Similarity=0.220  Sum_probs=117.4

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010976          155 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELW  231 (496)
Q Consensus       155 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~  231 (496)
                      .+..++..|..++..|+              |.+|++.|++.+...|+.   ..+.+.+|.+++.    .|++.+|+   
T Consensus         4 ~~~~lY~~a~~~~~~g~--------------y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~----~~~y~~A~---   62 (203)
T PF13525_consen    4 TAEALYQKALEALQQGD--------------YEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK----QGDYEEAI---   62 (203)
T ss_dssp             -HHHHHHHHHHHHHCT---------------HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----TT-HHHHH---
T ss_pred             CHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----cCCHHHHH---
Confidence            46789999999999999              999999999999998874   5789999999999    99999999   


Q ss_pred             HHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCcc-hHHHhhhhHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHH
Q 010976          232 KQATKNYEKAVQLNWNS---PQALNNWGLALQELSAIV-PAREKQTIVRTAISKFRAAIQLQFDFH---RAIYNLGTVLY  304 (496)
Q Consensus       232 ~~A~~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~~-~A~~~~~~~~~Ai~~~~~Al~l~P~~~---~a~~~lg~~~~  304 (496)
                          ..|++.+...|++   +.+++.+|.++..+.+-. ......+...+|+..|+..+...|+..   .+...+..+-.
T Consensus        63 ----~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~  138 (203)
T PF13525_consen   63 ----AAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRN  138 (203)
T ss_dssp             ----HHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHH
Confidence                8999999998886   468999999988764320 013355667899999999999999874   23333333322


Q ss_pred             HcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Q 010976          305 GLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV  355 (496)
Q Consensus       305 ~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~~  355 (496)
                      .+.+.....+..-.     ....|..|+..+..+++--|+......++.++
T Consensus       139 ~la~~e~~ia~~Y~-----~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l  184 (203)
T PF13525_consen  139 RLAEHELYIARFYY-----KRGKYKAAIIRFQYVIENYPDTPAAEEALARL  184 (203)
T ss_dssp             HHHHHHHHHHHHHH-----CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-----HcccHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence            22221111110000     00017889999999999999888776666553

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.62  E-value=1.4e-07  Score=95.62  Aligned_cols=69  Identities=22%  Similarity=0.209  Sum_probs=66.2

Q ss_pred             hCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHccCcchHHHhhhhH
Q 010976          199 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA---LNNWGLALQELSAIVPAREKQTIV  275 (496)
Q Consensus       199 l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a---~~~lg~~l~~~g~~~~A~~~~~~~  275 (496)
                      .+|+++.+|+|+|.+|..    +|++++|+       .+|+++|+++|++..+   |+|+|.+|..+|++          
T Consensus        70 ~dP~~a~a~~NLG~AL~~----lGryeEAI-------a~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~----------  128 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFS----KGRVKDAL-------AQFETALELNPNPDEAQAAYYNKACCHAYREEG----------  128 (453)
T ss_pred             CCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH----------
Confidence            589999999999999999    99999999       8999999999999965   99999999999999          


Q ss_pred             HHHHHHHHHHHHh
Q 010976          276 RTAISKFRAAIQL  288 (496)
Q Consensus       276 ~~Ai~~~~~Al~l  288 (496)
                      ++|+.+|++|+++
T Consensus       129 dEAla~LrrALel  141 (453)
T PLN03098        129 KKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999998

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.61  E-value=1.6e-06  Score=72.75  Aligned_cols=110  Identities=23%  Similarity=0.164  Sum_probs=89.8

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC----HHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL----HDAF  207 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~----~~a~  207 (496)
                      ....|+++.|++.|.++|.+.|..+.+|+|++..+.-+|+              .++|+..+++|+++.-..    -.++
T Consensus        53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~--------------~e~ALdDLn~AleLag~~trtacqa~  118 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGD--------------DEEALDDLNKALELAGDQTRTACQAF  118 (175)
T ss_pred             HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCC--------------hHHHHHHHHHHHHhcCccchHHHHHH
Confidence            4456999999999999999999999999999999999999              999999999999996543    3578


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHhcCCCCHHHHHHHHHHH
Q 010976          208 YNWAIAISDRAKMRGRTKEAEELWKQATK-----NYEKAVQLNWNSPQALNNWGLAL  259 (496)
Q Consensus       208 ~~lg~~~~~~~~~~g~~~eA~~~~~~A~~-----~~~~Al~l~P~~~~a~~~lg~~l  259 (496)
                      ..+|.+|..    +|+.+.|...|+.|..     .-++.+.+||.-+.+-..|+.++
T Consensus       119 vQRg~lyRl----~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~MLa~~f  171 (175)
T KOG4555|consen  119 VQRGLLYRL----LGNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQMLADAF  171 (175)
T ss_pred             HHHHHHHHH----hCchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            999999999    9999999987777654     23445677775544444455444

>PRK15331 chaperone protein SicA; Provisional

Probab=98.60  E-value=6.4e-07  Score=79.05  Aligned_cols=108  Identities=14%  Similarity=0.174  Sum_probs=97.3

Q ss_pred             HhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHH
Q 010976          198 RLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRT  277 (496)
Q Consensus       198 ~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~  277 (496)
                      .+.++.-+..|..|.-++.    .|++++|.       ..|+-..-++|.++..+..||.+++.+++|          ++
T Consensus        31 gis~~~le~iY~~Ay~~y~----~Gk~~eA~-------~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y----------~~   89 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFYN----QGRLDEAE-------TFFRFLCIYDFYNPDYTMGLAAVCQLKKQF----------QK   89 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCcCcHHHHHHHHHHHHHHHHH----------HH
Confidence            3455566778888888888    99999999       889988899999999999999999999999          99


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          278 AISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       278 Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                      |+..|-.|..++++++...+..|.|+..+|+                   ...|..+|..++. .|.+.
T Consensus        90 Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~-------------------~~~A~~~f~~a~~-~~~~~  138 (165)
T PRK15331         90 ACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK-------------------AAKARQCFELVNE-RTEDE  138 (165)
T ss_pred             HHHHHHHHHHcccCCCCccchHHHHHHHhCC-------------------HHHHHHHHHHHHh-CcchH
Confidence            9999999999999999999999999999998                   6788889998888 46555

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.60  E-value=1.7e-07  Score=71.06  Aligned_cols=66  Identities=18%  Similarity=0.112  Sum_probs=60.6

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976          133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  212 (496)
Q Consensus       133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  212 (496)
                      ...|++++|+..|++++..+|++.++++.+|.+|...|+              +++|...+++++..+|+++.++..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ--------------YDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT---------------HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            357999999999999999999999999999999999999              999999999999999999888777654

...

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.58  E-value=4.4e-07  Score=89.45  Aligned_cols=158  Identities=15%  Similarity=0.089  Sum_probs=122.3

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  211 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  211 (496)
                      +...|++++|++.+.+.     .+.++....-.+|..+++              ++.|.+.++.+-+.+.+..  ..+++
T Consensus       112 ~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R--------------~dlA~k~l~~~~~~~eD~~--l~qLa  170 (290)
T PF04733_consen  112 LFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNR--------------PDLAEKELKNMQQIDEDSI--LTQLA  170 (290)
T ss_dssp             HCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHCCSCCHH--HHHHH
T ss_pred             HHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCcHH--HHHHH
Confidence            44568999999888764     678888888999999999              9999999999988877644  44444


Q ss_pred             HHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc
Q 010976          212 IAISDRAKMRG--RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ  289 (496)
Q Consensus       212 ~~~~~~~~~~g--~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~  289 (496)
                      .++...+  .|  ++.+|.       -.|++..+..+.++..++.++.++..+|++          ++|...+.+|+..+
T Consensus       171 ~awv~l~--~g~e~~~~A~-------y~f~El~~~~~~t~~~lng~A~~~l~~~~~----------~eAe~~L~~al~~~  231 (290)
T PF04733_consen  171 EAWVNLA--TGGEKYQDAF-------YIFEELSDKFGSTPKLLNGLAVCHLQLGHY----------EEAEELLEEALEKD  231 (290)
T ss_dssp             HHHHHHH--HTTTCCCHHH-------HHHHHHHCCS--SHHHHHHHHHHHHHCT-H----------HHHHHHHHHHCCC-
T ss_pred             HHHHHHH--hCchhHHHHH-------HHHHHHHhccCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhc
Confidence            4443321  44  466676       888887777788999999999999999999          99999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHH
Q 010976          290 FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV  347 (496)
Q Consensus       290 P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~  347 (496)
                      |+++.++.|+..+...+|+..                  ..+..++.+....+|+++.
T Consensus       232 ~~~~d~LaNliv~~~~~gk~~------------------~~~~~~l~qL~~~~p~h~~  271 (290)
T PF04733_consen  232 PNDPDTLANLIVCSLHLGKPT------------------EAAERYLSQLKQSNPNHPL  271 (290)
T ss_dssp             CCHHHHHHHHHHHHHHTT-TC------------------HHHHHHHHHCHHHTTTSHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCh------------------hHHHHHHHHHHHhCCCChH
Confidence            999999999999999999721                  3455667777777887773

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.55  E-value=3.6e-05  Score=76.27  Aligned_cols=209  Identities=16%  Similarity=0.100  Sum_probs=154.6

Q ss_pred             hhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCCCCCCC
Q 010976          110 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPED-YDALYNWALVLQESADNVSLDST  178 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~-~~a~~~lg~~~~~~~~~~~~~~~  178 (496)
                      ..|++..|..++.+.-...          .+.-...|+++.|-.+..++-+..+++ ......++.++...|+       
T Consensus        96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d-------  168 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD-------  168 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC-------
Confidence            3466666666665533322          223334689999999999998884443 4566677888888888       


Q ss_pred             CcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH------------------HHH-HHH
Q 010976          179 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ------------------ATK-NYE  239 (496)
Q Consensus       179 ~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~------------------A~~-~~~  239 (496)
                             +..|..-..++++..|.++.++...-.+|..    .|++.+......+                  |.. .++
T Consensus       169 -------~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~----~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~  237 (400)
T COG3071         169 -------YPAARENVDQLLEMTPRHPEVLRLALRAYIR----LGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ  237 (400)
T ss_pred             -------chhHHHHHHHHHHhCcCChHHHHHHHHHHHH----hccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence                   9999999999999999999999999999998    8988887765422                  111 111


Q ss_pred             HH------------HhcCC----CCHHHHHHHHHHHHHccCcchHHH---------------------hhhhHHHHHHHH
Q 010976          240 KA------------VQLNW----NSPQALNNWGLALQELSAIVPARE---------------------KQTIVRTAISKF  282 (496)
Q Consensus       240 ~A------------l~l~P----~~~~a~~~lg~~l~~~g~~~~A~~---------------------~~~~~~~Ai~~~  282 (496)
                      ++            .+--|    +++.....++.-+..+|.+++|.+                     +.++...=++..
T Consensus       238 q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~  317 (400)
T COG3071         238 QARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAA  317 (400)
T ss_pred             HHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHH
Confidence            11            11112    356677777888889999988722                     456667777788


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Q 010976          283 RAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV  355 (496)
Q Consensus       283 ~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~~  355 (496)
                      ++.++..|+++..++.||..|++.+.                   |.+|..+|+.|+++.|+...|...-..+
T Consensus       318 e~~l~~h~~~p~L~~tLG~L~~k~~~-------------------w~kA~~~leaAl~~~~s~~~~~~la~~~  371 (400)
T COG3071         318 EKWLKQHPEDPLLLSTLGRLALKNKL-------------------WGKASEALEAALKLRPSASDYAELADAL  371 (400)
T ss_pred             HHHHHhCCCChhHHHHHHHHHHHhhH-------------------HHHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence            88889999999999999999999998                   9999999999999999988766554443

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.55  E-value=2.1e-05  Score=90.16  Aligned_cols=173  Identities=10%  Similarity=0.004  Sum_probs=113.0

Q ss_pred             hhhhhhcHHHHHHHHHHhhccc-----------hhhhHhhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcC
Q 010976          107 PHQLAEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIER----NPEDYDALYNWALVLQESAD  171 (496)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~l~~~-----------~~~~~~~g~~~~Ai~~~~~al~~----~P~~~~a~~~lg~~~~~~~~  171 (496)
                      .+...|+.++|+.++..+....           -.++.+.|++++|...|.+....    .|+ ...|..+-..|.+.|+
T Consensus       516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~  594 (1060)
T PLN03218        516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQ  594 (1060)
T ss_pred             HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCC
Confidence            4556788888888887765422           55667778888888888888653    343 5677777778888888


Q ss_pred             CCCCCCCCcchhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-----------------
Q 010976          172 NVSLDSTSPSKDALLEEACKKYDEATRLC-PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ-----------------  233 (496)
Q Consensus       172 ~~~~~~~~~~~~~~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~-----------------  233 (496)
                                    +++|.+.|++..+.+ +.+...|..+...|..    .|++++|++.|++                 
T Consensus       595 --------------ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k----~G~~deAl~lf~eM~~~Gv~PD~~TynsLI  656 (1060)
T PLN03218        595 --------------VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ----KGDWDFALSIYDDMKKKGVKPDEVFFSALV  656 (1060)
T ss_pred             --------------HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence                          888888888887775 3466777777777877    8888888844422                 


Q ss_pred             -----------HHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh--cCCCHHHHHHH
Q 010976          234 -----------ATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL--QFDFHRAIYNL  299 (496)
Q Consensus       234 -----------A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l--~P~~~~a~~~l  299 (496)
                                 |.+.+.+..+.. +-+...|+.+..+|.+.|++          ++|+..|++..+.  .| +...|+.|
T Consensus       657 ~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~----------eeA~~lf~eM~~~g~~P-dvvtyN~L  725 (1060)
T PLN03218        657 DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW----------KKALELYEDIKSIKLRP-TVSTMNAL  725 (1060)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHcCCCC-CHHHHHHH
Confidence                       223333333322 11344444444444444444          7777777776553  34 35667777


Q ss_pred             HHHHHHcchh
Q 010976          300 GTVLYGLAED  309 (496)
Q Consensus       300 g~~~~~~g~~  309 (496)
                      ...|.+.|+.
T Consensus       726 I~gy~k~G~~  735 (1060)
T PLN03218        726 ITALCEGNQL  735 (1060)
T ss_pred             HHHHHHCCCH
Confidence            7777777763

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.55  E-value=2.6e-06  Score=72.19  Aligned_cols=108  Identities=24%  Similarity=0.281  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHH
Q 010976          205 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISK  281 (496)
Q Consensus       205 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~  281 (496)
                      .++|++|.++..    +|+.++|+       ..|+++++....   -..++.++|.+|..+|++          ++|+..
T Consensus         2 ~~~~~~A~a~d~----~G~~~~Ai-------~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~----------deA~~~   60 (120)
T PF12688_consen    2 RALYELAWAHDS----LGREEEAI-------PLYRRALAAGLSGADRRRALIQLASTLRNLGRY----------DEALAL   60 (120)
T ss_pred             chHHHHHHHHHh----cCCHHHHH-------HHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCH----------HHHHHH
Confidence            578999999999    99999999       788888876544   367899999999999999          999999


Q ss_pred             HHHHHHhcCC---CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHh
Q 010976          282 FRAAIQLQFD---FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL  354 (496)
Q Consensus       282 ~~~Al~l~P~---~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~  354 (496)
                      +++++...|+   +......++.++...|+                   +.+|...+-.++.  +..+.|++++..
T Consensus        61 L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr-------------------~~eAl~~~l~~la--~~~~~y~ra~~~  115 (120)
T PF12688_consen   61 LEEALEEFPDDELNAALRVFLALALYNLGR-------------------PKEALEWLLEALA--ETLPRYRRAIRF  115 (120)
T ss_pred             HHHHHHHCCCccccHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            9999999888   88899999999999999                   5555555544443  333466666654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.54  E-value=1e-05  Score=77.76  Aligned_cols=172  Identities=15%  Similarity=0.068  Sum_probs=120.8

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHHHHcCCHHHHHHH
Q 010976          154 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDA---FYNWAIAISDRAKMRGRTKEAEEL  230 (496)
Q Consensus       154 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a---~~~lg~~~~~~~~~~g~~~eA~~~  230 (496)
                      ..+..++..|..+...|+              +++|++.|++++...|....+   .+.+|.+|+.    .+++++|+  
T Consensus        30 ~~~~~~Y~~A~~~~~~g~--------------y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~----~~~y~~A~--   89 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGN--------------WKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQ--   89 (243)
T ss_pred             CCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHH--
Confidence            467788999999999999              999999999999999997655   4999999999    99999999  


Q ss_pred             HHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCc--------chHHHhhhhHHHHHHHHHHHHHhcCCCH---HHH
Q 010976          231 WKQATKNYEKAVQLNWNS---PQALNNWGLALQELSAI--------VPAREKQTIVRTAISKFRAAIQLQFDFH---RAI  296 (496)
Q Consensus       231 ~~~A~~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~--------~~A~~~~~~~~~Ai~~~~~Al~l~P~~~---~a~  296 (496)
                           ..|++.++.+|++   +.+++.+|.++..++.-        +.....+....+|+..|++.++..|+..   .+.
T Consensus        90 -----~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~  164 (243)
T PRK10866         90 -----AAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDAT  164 (243)
T ss_pred             -----HHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence                 8999999998876   56789999887666521        1112234455789999999999999874   344


Q ss_pred             HHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Q 010976          297 YNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV  355 (496)
Q Consensus       297 ~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~~  355 (496)
                      ..+..+...+.+.....+..-.     ....|..|+.-++..++--|+.+....+|..+
T Consensus       165 ~rl~~l~~~la~~e~~ia~~Y~-----~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l  218 (243)
T PRK10866        165 KRLVFLKDRLAKYELSVAEYYT-----KRGAYVAVVNRVEQMLRDYPDTQATRDALPLM  218 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HcCchHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence            4444444444432211111000     00015666666777777667666555555443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.53  E-value=1.2e-05  Score=85.02  Aligned_cols=131  Identities=11%  Similarity=0.036  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHH
Q 010976          205 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA  284 (496)
Q Consensus       205 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~  284 (496)
                      .+++.++..|..    .|++++|+       .+.++||+..|..++.|...|.+|-..|++          .+|...++.
T Consensus       195 w~~~~lAqhyd~----~g~~~~Al-------~~Id~aI~htPt~~ely~~KarilKh~G~~----------~~Aa~~~~~  253 (517)
T PF12569_consen  195 WTLYFLAQHYDY----LGDYEKAL-------EYIDKAIEHTPTLVELYMTKARILKHAGDL----------KEAAEAMDE  253 (517)
T ss_pred             HHHHHHHHHHHH----hCCHHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHHHCCCH----------HHHHHHHHH
Confidence            466888999988    99999999       899999999999999999999999999999          999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHcchhHHhcc--CCCCCCCCCcHH---------HHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 010976          285 AIQLQFDFHRAIYNLGTVLYGLAEDTLRTG--GTVNPREVSPNE---------LYSQSAIYIAAAHALKPSYSVYSSALR  353 (496)
Q Consensus       285 Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~--~~~~~~~~~~~~---------~~~~A~~~~~~a~~l~p~~~~y~~al~  353 (496)
                      |-.+|+.+-.+....+..+.+.|+...+..  ......+.++..         +..+.+..|.+...+..+...|.....
T Consensus       254 Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  254 ARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             HHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999999998888888888888887654332  111111112221         334555566665555554445554444


Q ss_pred             hhh
Q 010976          354 LVR  356 (496)
Q Consensus       354 ~~~  356 (496)
                      .+.
T Consensus       334 ~f~  336 (517)
T PF12569_consen  334 HFD  336 (517)
T ss_pred             HHH
Confidence            443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.53  E-value=2.5e-05  Score=89.57  Aligned_cols=179  Identities=13%  Similarity=0.042  Sum_probs=141.6

Q ss_pred             hhhhhhcHHHHHHHHHHhhccc-----------hhhhHhhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCC
Q 010976          107 PHQLAEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERN--PEDYDALYNWALVLQESADNV  173 (496)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~l~~~-----------~~~~~~~g~~~~Ai~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~  173 (496)
                      .+...|+.+.|..++..+....           -.++.+.|++++|+..|.+..+..  | +...|..+-..|.+.|+  
T Consensus       481 ~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~--  557 (1060)
T PLN03218        481 TCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGA--  557 (1060)
T ss_pred             HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCC--
Confidence            4557899999999998877422           567888999999999999987654  4 46789999999999999  


Q ss_pred             CCCCCCcchhhhHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCC
Q 010976          174 SLDSTSPSKDALLEEACKKYDEATRL----CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNS  248 (496)
Q Consensus       174 ~~~~~~~~~~~~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~-P~~  248 (496)
                                  +++|.+.|++....    .|+ ...|..+-.+|.+    .|++++|.       +.|++..+.+ +.+
T Consensus       558 ------------~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k----~G~ldeA~-------elf~~M~e~gi~p~  613 (1060)
T PLN03218        558 ------------VDRAFDVLAEMKAETHPIDPD-HITVGALMKACAN----AGQVDRAK-------EVYQMIHEYNIKGT  613 (1060)
T ss_pred             ------------HHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHcCCCCC
Confidence                        99999999999763    454 5788888889999    99999999       5666666665 346


Q ss_pred             HHHHHHHHHHHHHccCcchHH-------------------------HhhhhHHHHHHHHHHHHHhc-CCCHHHHHHHHHH
Q 010976          249 PQALNNWGLALQELSAIVPAR-------------------------EKQTIVRTAISKFRAAIQLQ-FDFHRAIYNLGTV  302 (496)
Q Consensus       249 ~~a~~~lg~~l~~~g~~~~A~-------------------------~~~~~~~~Ai~~~~~Al~l~-P~~~~a~~~lg~~  302 (496)
                      ...|+.+...|.+.|++++|.                         .+.|++++|...|++..+.. +-+...+..|..+
T Consensus       614 ~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~a  693 (1060)
T PLN03218        614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA  693 (1060)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            777888888888888886661                         14567788888888888764 3356788888888


Q ss_pred             HHHcchhHHh
Q 010976          303 LYGLAEDTLR  312 (496)
Q Consensus       303 ~~~~g~~~~a  312 (496)
                      |.+.|+...+
T Consensus       694 y~k~G~~eeA  703 (1060)
T PLN03218        694 CSNAKNWKKA  703 (1060)
T ss_pred             HHhCCCHHHH
Confidence            8888875443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.53  E-value=5.2e-07  Score=69.39  Aligned_cols=71  Identities=24%  Similarity=0.299  Sum_probs=64.1

Q ss_pred             HHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 010976          162 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA  241 (496)
Q Consensus       162 lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~A  241 (496)
                      |..+|+..++              +++|++++++++.++|+++..++.+|.++..    +|++.+|+       ..|+++
T Consensus         1 l~~~~~~~~~--------------~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~g~~~~A~-------~~l~~~   55 (73)
T PF13371_consen    1 LKQIYLQQED--------------YEEALEVLERALELDPDDPELWLQRARCLFQ----LGRYEEAL-------EDLERA   55 (73)
T ss_pred             CHHHHHhCCC--------------HHHHHHHHHHHHHhCcccchhhHHHHHHHHH----hccHHHHH-------HHHHHH
Confidence            3567888888              9999999999999999999999999999999    99999999       899999


Q ss_pred             HhcCCCCHHHHHHHHH
Q 010976          242 VQLNWNSPQALNNWGL  257 (496)
Q Consensus       242 l~l~P~~~~a~~~lg~  257 (496)
                      ++.+|++..+....+.
T Consensus        56 l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen   56 LELSPDDPDARALRAM   71 (73)
T ss_pred             HHHCCCcHHHHHHHHh
Confidence            9999999887765543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.53  E-value=9.4e-08  Score=74.69  Aligned_cols=75  Identities=23%  Similarity=0.302  Sum_probs=61.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHH
Q 010976          201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS  280 (496)
Q Consensus       201 P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~  280 (496)
                      |+...+++++|.+|..    +|++++|+..|++|++.++..-..+|....+++++|.++..+|++          ++|+.
T Consensus         2 ~~~a~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~----------~~A~~   67 (78)
T PF13424_consen    2 PDTANAYNNLARVYRE----LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDY----------EEALE   67 (78)
T ss_dssp             HHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHH----------HHHHH
T ss_pred             HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCH----------HHHHH
Confidence            4556789999999999    999999999999888884433223344578999999999999999          99999


Q ss_pred             HHHHHHHhc
Q 010976          281 KFRAAIQLQ  289 (496)
Q Consensus       281 ~~~~Al~l~  289 (496)
                      +|++++++.
T Consensus        68 ~~~~al~i~   76 (78)
T PF13424_consen   68 YYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhh
Confidence            999999863

...

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.52  E-value=5.6e-06  Score=75.53  Aligned_cols=92  Identities=22%  Similarity=0.301  Sum_probs=82.0

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976          133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  212 (496)
Q Consensus       133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  212 (496)
                      -..|-+.-|.-.|.+++.++|+-+++++.+|..+...|+              |+.|.+.|...++++|.+--++.|+|+
T Consensus        76 DSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~--------------fdaa~eaFds~~ELDp~y~Ya~lNRgi  141 (297)
T COG4785          76 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN--------------FDAAYEAFDSVLELDPTYNYAHLNRGI  141 (297)
T ss_pred             hhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhccc--------------chHHHHHhhhHhccCCcchHHHhccce
Confidence            346778889999999999999999999999999999999              999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 010976          213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP  249 (496)
Q Consensus       213 ~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~  249 (496)
                      +++-    -|++.-|.       +.+.+-.+-||++|
T Consensus       142 ~~YY----~gR~~LAq-------~d~~~fYQ~D~~DP  167 (297)
T COG4785         142 ALYY----GGRYKLAQ-------DDLLAFYQDDPNDP  167 (297)
T ss_pred             eeee----cCchHhhH-------HHHHHHHhcCCCCh
Confidence            9999    99999999       45555555566554

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=6.8e-06  Score=84.78  Aligned_cols=153  Identities=19%  Similarity=0.116  Sum_probs=122.0

Q ss_pred             hhhcHHHHHHHHHHhhccc---------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCc
Q 010976          110 LAEQNNAAMELINSVTGVD---------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSP  180 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~l~~~---------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~  180 (496)
                      +.++|+.|+.+.+...+..         ..|.++++..++|+..++   ..++.+..++...|.+++++++         
T Consensus        58 q~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~---------  125 (652)
T KOG2376|consen   58 QLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLER---------  125 (652)
T ss_pred             hhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhh---------
Confidence            5677888877666554311         456678888888888888   5566677788888888888888         


Q ss_pred             chhhhHHHHHHHHHHHHHh------------------------------CCC-CHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 010976          181 SKDALLEEACKKYDEATRL------------------------------CPT-LHDAFYNWAIAISDRAKMRGRTKEAEE  229 (496)
Q Consensus       181 ~~~~~~~~A~~~~~~Al~l------------------------------~P~-~~~a~~~lg~~~~~~~~~~g~~~eA~~  229 (496)
                           |++|...|+..++-                              .|. ..+.+||.+.++..    .|+|.+|++
T Consensus       126 -----ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~----~gky~qA~e  196 (652)
T KOG2376|consen  126 -----YDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIE----NGKYNQAIE  196 (652)
T ss_pred             -----HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHh----cccHHHHHH
Confidence                 88888888876433                              233 56678999999999    999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH
Q 010976          230 LWKQATKNYEKAVQLNWNS--------PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH  293 (496)
Q Consensus       230 ~~~~A~~~~~~Al~l~P~~--------~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~  293 (496)
                      .+++|+..+++-+..+-.+        ..+...|+.+++.+|+.          ++|...|...++.+|-+.
T Consensus       197 lL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt----------~ea~~iy~~~i~~~~~D~  258 (652)
T KOG2376|consen  197 LLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT----------AEASSIYVDIIKRNPADE  258 (652)
T ss_pred             HHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch----------HHHHHHHHHHHHhcCCCc
Confidence            9999999999988776544        33678899999999999          999999999999987654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.49  E-value=2.7e-06  Score=86.81  Aligned_cols=113  Identities=18%  Similarity=0.090  Sum_probs=104.4

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  214 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~  214 (496)
                      .++++.|+..|++..+.+|+   +...++.++...++              -.+|++.+.+++..+|.+...+...+..+
T Consensus       182 t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~--------------E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL  244 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNE--------------EVEAIRLLNEALKENPQDSELLNLQAEFL  244 (395)
T ss_pred             cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCc--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            47899999999999998875   56778999999998              99999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH
Q 010976          215 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA  285 (496)
Q Consensus       215 ~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A  285 (496)
                      ..    .++++.|+       ...++++.+.|++...|+.|+.+|..+|++          +.|+..++.+
T Consensus       245 l~----k~~~~lAL-------~iAk~av~lsP~~f~~W~~La~~Yi~~~d~----------e~ALlaLNs~  294 (395)
T PF09295_consen  245 LS----KKKYELAL-------EIAKKAVELSPSEFETWYQLAECYIQLGDF----------ENALLALNSC  294 (395)
T ss_pred             Hh----cCCHHHHH-------HHHHHHHHhCchhHHHHHHHHHHHHhcCCH----------HHHHHHHhcC
Confidence            99    99999999       899999999999999999999999999999          9998777654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.49  E-value=3.5e-05  Score=76.36  Aligned_cols=173  Identities=16%  Similarity=0.101  Sum_probs=134.8

Q ss_pred             hhhhhhcHHHHHHHHHHhhccc-----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCC
Q 010976          107 PHQLAEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSL  175 (496)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~l~~~-----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~  175 (496)
                      +-.+.|+.+.+-.++.++....           .+....+|++..|..-..++++..|.++.++.....+|+..|+    
T Consensus       127 AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~----  202 (400)
T COG3071         127 AAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGA----  202 (400)
T ss_pred             HHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc----
Confidence            3467899999999999888773           2334557999999999999999999999999999999999999    


Q ss_pred             CCCCcchhhhHHHHHHHHHHHHHh------------------------C--------------C----CCHHHHHHHHHH
Q 010976          176 DSTSPSKDALLEEACKKYDEATRL------------------------C--------------P----TLHDAFYNWAIA  213 (496)
Q Consensus       176 ~~~~~~~~~~~~~A~~~~~~Al~l------------------------~--------------P----~~~~a~~~lg~~  213 (496)
                                +.+......+.-+-                        +              |    +++.....++.-
T Consensus       203 ----------~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~  272 (400)
T COG3071         203 ----------WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAER  272 (400)
T ss_pred             ----------HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHH
Confidence                      44444333322211                        1              1    122333334444


Q ss_pred             HHHHHHHcCCHHHHHHHHHH------------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHH
Q 010976          214 ISDRAKMRGRTKEAEELWKQ------------------------ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAR  269 (496)
Q Consensus       214 ~~~~~~~~g~~~eA~~~~~~------------------------A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~  269 (496)
                      +..    +|++++|.+...+                        =++..++.+...|+++..+..||.++.+.+.+    
T Consensus       273 li~----l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w----  344 (400)
T COG3071         273 LIR----LGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLW----  344 (400)
T ss_pred             HHH----cCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHH----
Confidence            444    9999999877644                        33577888899999999999999999999999    


Q ss_pred             HhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          270 EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       270 ~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                            .+|..+|+.|++..|+ ...+..+|.++..+|+
T Consensus       345 ------~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~  376 (400)
T COG3071         345 ------GKASEALEAALKLRPS-ASDYAELADALDQLGE  376 (400)
T ss_pred             ------HHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCC
Confidence                  9999999999999887 6778889999999998

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.49  E-value=7.4e-07  Score=68.50  Aligned_cols=69  Identities=19%  Similarity=0.141  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcC
Q 010976          211 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF  290 (496)
Q Consensus       211 g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P  290 (496)
                      ..+|..    .+++++|+       +++++++.++|+++.++..+|.++..+|++          .+|+..|++++++.|
T Consensus         2 ~~~~~~----~~~~~~A~-------~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~----------~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    2 KQIYLQ----QEDYEEAL-------EVLERALELDPDDPELWLQRARCLFQLGRY----------EEALEDLERALELSP   60 (73)
T ss_pred             HHHHHh----CCCHHHHH-------HHHHHHHHhCcccchhhHHHHHHHHHhccH----------HHHHHHHHHHHHHCC
Confidence            455666    99999999       899999999999999999999999999999          999999999999999


Q ss_pred             CCHHHHHHHH
Q 010976          291 DFHRAIYNLG  300 (496)
Q Consensus       291 ~~~~a~~~lg  300 (496)
                      ++..+.....
T Consensus        61 ~~~~~~~~~a   70 (73)
T PF13371_consen   61 DDPDARALRA   70 (73)
T ss_pred             CcHHHHHHHH
Confidence            9988766554

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.48  E-value=5e-07  Score=68.42  Aligned_cols=64  Identities=19%  Similarity=0.166  Sum_probs=58.1

Q ss_pred             hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976          183 DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL  257 (496)
Q Consensus       183 ~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  257 (496)
                      .|++++|+..|++++..+|++..+++.+|.+|..    .|++++|.       ..+++++..+|+++.++..++.
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~-------~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK----QGQYDEAE-------ELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH----TT-HHHHH-------HHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHHCcCHHHHHHHHhc
Confidence            3459999999999999999999999999999999    99999999       8999999999999888877665

...

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.48  E-value=4.6e-05  Score=69.61  Aligned_cols=181  Identities=28%  Similarity=0.301  Sum_probs=138.9

Q ss_pred             hhhcHHHHHHHHHHhhcc--c----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHhcCCCCCC
Q 010976          110 LAEQNNAAMELINSVTGV--D----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWAL-VLQESADNVSLD  176 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~l~~--~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~-~~~~~~~~~~~~  176 (496)
                      ..+.+..+...+......  .          +......+++..++..+.+++...+.........+. ++...++     
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  145 (291)
T COG0457          71 KLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGD-----  145 (291)
T ss_pred             HcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCC-----
Confidence            445555555555555431  1          222334577888999999999888877666666666 8888888     


Q ss_pred             CCCcchhhhHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-CHHHH
Q 010976          177 STSPSKDALLEEACKKYDEATRLCP---TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-SPQAL  252 (496)
Q Consensus       177 ~~~~~~~~~~~~A~~~~~~Al~l~P---~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~-~~~a~  252 (496)
                               ++.|+..|.+++..+|   .....+..++..+..    .+++.+++       ..+.+++...+. ....+
T Consensus       146 ---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~-------~~~~~~~~~~~~~~~~~~  205 (291)
T COG0457         146 ---------YEEALELYEKALELDPELNELAEALLALGALLEA----LGRYEEAL-------ELLEKALKLNPDDDAEAL  205 (291)
T ss_pred             ---------HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH----hcCHHHHH-------HHHHHHHhhCcccchHHH
Confidence                     9999999999988777   355666666666666    78888888       788888888888 68899


Q ss_pred             HHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHH
Q 010976          253 NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSA  332 (496)
Q Consensus       253 ~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~  332 (496)
                      .+++..+...+++          ..|+..+.+++...|.....+..++..+...+.                   +..+.
T Consensus       206 ~~~~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~  256 (291)
T COG0457         206 LNLGLLYLKLGKY----------EEALEYYEKALELDPDNAEALYNLALLLLELGR-------------------YEEAL  256 (291)
T ss_pred             HHhhHHHHHcccH----------HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCC-------------------HHHHH
Confidence            9999999999988          999999999999999877788888888875554                   67778


Q ss_pred             HHHHHHHhcCCc
Q 010976          333 IYIAAAHALKPS  344 (496)
Q Consensus       333 ~~~~~a~~l~p~  344 (496)
                      ..+.+++...|.
T Consensus       257 ~~~~~~~~~~~~  268 (291)
T COG0457         257 EALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHhCcc
Confidence            888888888886

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.48  E-value=2.3e-07  Score=72.50  Aligned_cols=70  Identities=27%  Similarity=0.363  Sum_probs=59.0

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHHHHHcCCHH
Q 010976          153 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL---C----PTLHDAFYNWAIAISDRAKMRGRTK  225 (496)
Q Consensus       153 P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l---~----P~~~~a~~~lg~~~~~~~~~~g~~~  225 (496)
                      |+...++.++|.+|..+|+              +++|+.+|++++++   .    |..+.+++++|.++..    +|+++
T Consensus         2 ~~~a~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~   63 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGR--------------YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR----LGDYE   63 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----TTHHH
T ss_pred             HHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----cCCHH
Confidence            4456789999999999999              99999999999987   1    2236789999999999    99999


Q ss_pred             HHHHHHHHHHHHHHH
Q 010976          226 EAEELWKQATKNYEK  240 (496)
Q Consensus       226 eA~~~~~~A~~~~~~  240 (496)
                      +|++.|++|++.+++
T Consensus        64 ~A~~~~~~al~i~~k   78 (78)
T PF13424_consen   64 EALEYYQKALDIFEK   78 (78)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhcC
Confidence            999888888877764

...

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.47  E-value=5.9e-06  Score=69.39  Aligned_cols=100  Identities=32%  Similarity=0.350  Sum_probs=87.1

Q ss_pred             HHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 010976          160 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE  239 (496)
Q Consensus       160 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~  239 (496)
                      -..|..+.+.|+              ++.|++.|.++|.+.|.++.+|+|++.++.-    +|+.++|+       +.+.
T Consensus        47 El~~valaE~g~--------------Ld~AlE~F~qal~l~P~raSayNNRAQa~RL----q~~~e~AL-------dDLn  101 (175)
T KOG4555|consen   47 ELKAIALAEAGD--------------LDGALELFGQALCLAPERASAYNNRAQALRL----QGDDEEAL-------DDLN  101 (175)
T ss_pred             HHHHHHHHhccc--------------hHHHHHHHHHHHHhcccchHhhccHHHHHHH----cCChHHHH-------HHHH
Confidence            345778888999              9999999999999999999999999999999    99999999       7777


Q ss_pred             HHHhcCCCC----HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHH
Q 010976          240 KAVQLNWNS----PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR  294 (496)
Q Consensus       240 ~Al~l~P~~----~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~  294 (496)
                      +|+++.-..    -.++...|.+|..+|+-          +.|...|+.|.++...++.
T Consensus       102 ~AleLag~~trtacqa~vQRg~lyRl~g~d----------d~AR~DFe~AA~LGS~FAr  150 (175)
T KOG4555|consen  102 KALELAGDQTRTACQAFVQRGLLYRLLGND----------DAARADFEAAAQLGSKFAR  150 (175)
T ss_pred             HHHHhcCccchHHHHHHHHHHHHHHHhCch----------HHHHHhHHHHHHhCCHHHH
Confidence            888776443    45789999999999999          9999999999888766544

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.46  E-value=5.5e-06  Score=80.58  Aligned_cols=173  Identities=14%  Similarity=0.048  Sum_probs=126.9

Q ss_pred             hhhcHHHHHHHHHHhhccc-----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 010976          110 LAEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST  178 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~l~~~-----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~  178 (496)
                      ...++.-|+.+++..+...           +.|++.+|+|++|+..|.-+...+--+.+.+.+|+.+++-+|.       
T Consensus        34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~-------  106 (557)
T KOG3785|consen   34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ-------  106 (557)
T ss_pred             hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH-------
Confidence            3456667777777666544           4578889999999999999998877788999999999999999       


Q ss_pred             CcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH------HHHcCCHHH----------HHHHHHHHHHHHHHHH
Q 010976          179 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDR------AKMRGRTKE----------AEELWKQATKNYEKAV  242 (496)
Q Consensus       179 ~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~------~~~~g~~~e----------A~~~~~~A~~~~~~Al  242 (496)
                             |.+|...-.++-+ .|-..+.+++++.-+.+.      +..+++..+          ...+|++||+.|.+.+
T Consensus       107 -------Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL  178 (557)
T KOG3785|consen  107 -------YIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVL  178 (557)
T ss_pred             -------HHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence                   9999876665421 111123333333221110      000111111          1244677889999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976          243 QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  307 (496)
Q Consensus       243 ~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g  307 (496)
                      .-+|++...-.+++.||.++.-+          +-+.+.+.--|+.-|+.+.+.+.++..++++-
T Consensus       179 ~dn~ey~alNVy~ALCyyKlDYy----------dvsqevl~vYL~q~pdStiA~NLkacn~fRl~  233 (557)
T KOG3785|consen  179 QDNPEYIALNVYMALCYYKLDYY----------DVSQEVLKVYLRQFPDSTIAKNLKACNLFRLI  233 (557)
T ss_pred             hcChhhhhhHHHHHHHHHhcchh----------hhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhh
Confidence            99999999999999999999999          99999999999999999999998888877664

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.42  E-value=3.8e-05  Score=70.16  Aligned_cols=159  Identities=29%  Similarity=0.313  Sum_probs=139.2

Q ss_pred             hHhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIE--RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN  209 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~  209 (496)
                      +...+.+..++..+...+.  ..+.....+..++..+...+.              +..+++.+.+++...+........
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~  134 (291)
T COG0457          69 LLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGK--------------YEEALELLEKALALDPDPDLAEAL  134 (291)
T ss_pred             HHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHcCCCCcchHHHH
Confidence            4456889999999999997  788999999999999999999              999999999999998887666666


Q ss_pred             HHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH
Q 010976          210 WAI-AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW---NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA  285 (496)
Q Consensus       210 lg~-~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P---~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A  285 (496)
                      .+. ++..    .|+++.|.       ..|.+++..+|   .....+..++..+...+++          +.|+..+.++
T Consensus       135 ~~~~~~~~----~~~~~~a~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~  193 (291)
T COG0457         135 LALGALYE----LGDYEEAL-------ELYEKALELDPELNELAEALLALGALLEALGRY----------EEALELLEKA  193 (291)
T ss_pred             HHHHHHHH----cCCHHHHH-------HHHHHHHhcCCCccchHHHHHHhhhHHHHhcCH----------HHHHHHHHHH
Confidence            666 7888    99999999       77888777777   4667777788888888888          9999999999


Q ss_pred             HHhcCC-CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976          286 IQLQFD-FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  344 (496)
Q Consensus       286 l~l~P~-~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~  344 (496)
                      +...+. ....+.+++.++...+.                   +..+..++..++...|.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         194 LKLNPDDDAEALLNLGLLYLKLGK-------------------YEEALEYYEKALELDPD  234 (291)
T ss_pred             HhhCcccchHHHHHhhHHHHHccc-------------------HHHHHHHHHHHHhhCcc
Confidence            999999 79999999999999996                   78888899999998887

>PLN03077 Protein ECB2; Provisional

Probab=98.41  E-value=2.8e-05  Score=88.64  Aligned_cols=191  Identities=9%  Similarity=-0.020  Sum_probs=122.3

Q ss_pred             hhhhcHHHHHHHHHHhhccc-------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC---------
Q 010976          109 QLAEQNNAAMELINSVTGVD-------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADN---------  172 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~l~~~-------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~---------  172 (496)
                      ...|+.+.|...+.+....+       -.++.+.|++++|+..|++.+...+-+...+..+-..+...|..         
T Consensus       435 ~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~  514 (857)
T PLN03077        435 SKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAH  514 (857)
T ss_pred             HHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence            35677788888877765543       24566678888888888888754332333332222222222210         


Q ss_pred             -----CCCCCC-------CcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-------
Q 010976          173 -----VSLDST-------SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ-------  233 (496)
Q Consensus       173 -----~~~~~~-------~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~-------  233 (496)
                           ..++..       -+.+.|++++|.+.|+..    +.+...|+.+...|..    .|+.++|++.|++       
T Consensus       515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~----~G~~~~A~~lf~~M~~~g~~  586 (857)
T PLN03077        515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVA----HGKGSMAVELFNRMVESGVN  586 (857)
T ss_pred             HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCC
Confidence                 000000       011223377887777765    4566778888888888    8888888877643       


Q ss_pred             ---------------------HHHHHHHHHhc---CCCCHHHHHHHHHHHHHccCcchHHH-------------------
Q 010976          234 ---------------------ATKNYEKAVQL---NWNSPQALNNWGLALQELSAIVPARE-------------------  270 (496)
Q Consensus       234 ---------------------A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~~A~~-------------------  270 (496)
                                           |...|+...+.   .| +...|..+..+|.+.|++++|.+                   
T Consensus       587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~  665 (857)
T PLN03077        587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLN  665 (857)
T ss_pred             CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHH
Confidence                                 55666666533   34 45788889999999999877722                   


Q ss_pred             ---hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          271 ---KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       271 ---~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                         ..++.+.+....++.++++|++...+..|+.+|...|+
T Consensus       666 ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~  706 (857)
T PLN03077        666 ACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK  706 (857)
T ss_pred             HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence               34666777777778888888888888888888888887

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=1e-06  Score=81.34  Aligned_cols=90  Identities=21%  Similarity=0.169  Sum_probs=82.1

Q ss_pred             CCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976          178 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL  257 (496)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  257 (496)
                      +..+...+|..|+.+|.+||.++|..+..|.|.+.+|++    +.+++...       ..+++|++++|+...+++.+|.
T Consensus        18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk----~~~~~~v~-------~dcrralql~~N~vk~h~flg~   86 (284)
T KOG4642|consen   18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK----LKHWEPVE-------EDCRRALQLDPNLVKAHYFLGQ   86 (284)
T ss_pred             ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH----hhhhhhhh-------hhHHHHHhcChHHHHHHHHHHH
Confidence            344555569999999999999999999999999999999    77777777       8999999999999999999999


Q ss_pred             HHHHccCcchHHHhhhhHHHHHHHHHHHHHh
Q 010976          258 ALQELSAIVPAREKQTIVRTAISKFRAAIQL  288 (496)
Q Consensus       258 ~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l  288 (496)
                      ++.....+          ++||..+.+|..+
T Consensus        87 ~~l~s~~~----------~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   87 WLLQSKGY----------DEAIKVLQRAYSL  107 (284)
T ss_pred             HHHhhccc----------cHHHHHHHHHHHH
Confidence            99999999          9999999999765

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.37  E-value=1.2e-06  Score=79.89  Aligned_cols=104  Identities=16%  Similarity=0.145  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010976          156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT  235 (496)
Q Consensus       156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~  235 (496)
                      +..++.+|..|-.+|-              ..-|.-.|.+++.++|+.+++++.||..+..    .|+|+.|.       
T Consensus        65 A~l~fERGvlYDSlGL--------------~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~----a~~fdaa~-------  119 (297)
T COG4785          65 AQLLFERGVLYDSLGL--------------RALARNDFSQALAIRPDMPEVFNYLGIYLTQ----AGNFDAAY-------  119 (297)
T ss_pred             HHHHHHhcchhhhhhH--------------HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh----cccchHHH-------
Confidence            3456778888888888              9999999999999999999999999999999    99999999       


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHH
Q 010976          236 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR  294 (496)
Q Consensus       236 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~  294 (496)
                      +.|...+++||.+-.++.|.|..+..-|++          .-|.+.+.+--+.||++|-
T Consensus       120 eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~----------~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         120 EAFDSVLELDPTYNYAHLNRGIALYYGGRY----------KLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             HHhhhHhccCCcchHHHhccceeeeecCch----------HhhHHHHHHHHhcCCCChH
Confidence            899999999999999999999999999999          8888888888888888874

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.37  E-value=9.4e-07  Score=87.11  Aligned_cols=154  Identities=18%  Similarity=0.125  Sum_probs=109.3

Q ss_pred             CChhhhhhcHHHHHHHHHHhhccc---------------hhhhHhhccHHHHHHHHHHHHHhCC--C----CHHHHHHHH
Q 010976          105 NTPHQLAEQNNAAMELINSVTGVD---------------EEGRSRQRILTFAAKRYANAIERNP--E----DYDALYNWA  163 (496)
Q Consensus       105 ~~~~~~~~~~~~A~~~~~~~l~~~---------------~~~~~~~g~~~~Ai~~~~~al~~~P--~----~~~a~~~lg  163 (496)
                      +..++..+++++|...|.++....               ....++..++++|+.+|++|+.+.-  +    -+.++..+|
T Consensus        42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA  121 (282)
T PF14938_consen   42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELA  121 (282)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            344566677777777776665443               1112345699999999999998742  2    256788999


Q ss_pred             HHHHHh-cCCCCCCCCCcchhhhHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010976          164 LVLQES-ADNVSLDSTSPSKDALLEEACKKYDEATRLCP--T----LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK  236 (496)
Q Consensus       164 ~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P--~----~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~  236 (496)
                      .+|... ++              +++|+++|++|+.+.-  +    -...+.++|.++..    +|+|++|+       +
T Consensus       122 ~~ye~~~~d--------------~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~----l~~y~~A~-------~  176 (282)
T PF14938_consen  122 EIYEEQLGD--------------YEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR----LGRYEEAI-------E  176 (282)
T ss_dssp             HHHCCTT----------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH----TT-HHHHH-------H
T ss_pred             HHHHHHcCC--------------HHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH----hCCHHHHH-------H
Confidence            999888 88              9999999999999822  1    13567888999999    99999999       5


Q ss_pred             HHHHHHhcCC-------CCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH
Q 010976          237 NYEKAVQLNW-------NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH  293 (496)
Q Consensus       237 ~~~~Al~l~P-------~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~  293 (496)
                      .|++.....-       +-...+...+.++...|++          -.|...|++....+|.+.
T Consensus       177 ~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~----------v~A~~~~~~~~~~~~~F~  230 (282)
T PF14938_consen  177 IYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDY----------VAARKALERYCSQDPSFA  230 (282)
T ss_dssp             HHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHGTTSTTST
T ss_pred             HHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCC
Confidence            6665554321       1123566788899999998          999999999999998663

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.36  E-value=5.4e-05  Score=67.65  Aligned_cols=137  Identities=18%  Similarity=0.095  Sum_probs=115.5

Q ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHH
Q 010976          137 ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-LCPTLHDAFYNWAIAIS  215 (496)
Q Consensus       137 ~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-l~P~~~~a~~~lg~~~~  215 (496)
                      +.+.+..-..+.+.+.|.. .-.+.||..+.++|+              +.+|..+|++++. +..+++..+..++.+.+
T Consensus        71 dP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr--------------~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf  135 (251)
T COG4700          71 DPERHLREATEELAIAPTV-QNRYRLANALAELGR--------------YHEAVPHYQQALSGIFAHDAAMLLGLAQAQF  135 (251)
T ss_pred             ChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhh--------------hhhhHHHHHHHhccccCCCHHHHHHHHHHHH
Confidence            4445555556666666754 447789999999999              9999999999986 57789999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH
Q 010976          216 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH  293 (496)
Q Consensus       216 ~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~  293 (496)
                      .    .+++.+|.       ..+++..+.+|.  .+..+..+|.+|..+|++          .+|...|+.++...|+ +
T Consensus       136 a----~~~~A~a~-------~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~----------a~Aesafe~a~~~ypg-~  193 (251)
T COG4700         136 A----IQEFAAAQ-------QTLEDLMEYNPAFRSPDGHLLFARTLAAQGKY----------ADAESAFEVAISYYPG-P  193 (251)
T ss_pred             h----hccHHHHH-------HHHHHHhhcCCccCCCCchHHHHHHHHhcCCc----------hhHHHHHHHHHHhCCC-H
Confidence            9    99999999       889999999986  677888999999999999          9999999999999988 5


Q ss_pred             HHHHHHHHHHHHcchhH
Q 010976          294 RAIYNLGTVLYGLAEDT  310 (496)
Q Consensus       294 ~a~~~lg~~~~~~g~~~  310 (496)
                      .+....+..+..+|+..
T Consensus       194 ~ar~~Y~e~La~qgr~~  210 (251)
T COG4700         194 QARIYYAEMLAKQGRLR  210 (251)
T ss_pred             HHHHHHHHHHHHhcchh
Confidence            66666788888888743

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.35  E-value=5.2e-05  Score=84.47  Aligned_cols=114  Identities=12%  Similarity=-0.064  Sum_probs=78.4

Q ss_pred             hhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh--CCCCHHHH
Q 010976          130 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--CPTLHDAF  207 (496)
Q Consensus       130 ~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--~P~~~~a~  207 (496)
                      ..+.+.|++++|...|++.   .+.+..+|+.+...|.+.|+              +++|++.|++....  .| +...|
T Consensus       267 ~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~--------------~~eA~~lf~~M~~~g~~p-d~~t~  328 (697)
T PLN03081        267 DMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGY--------------SEEALCLYYEMRDSGVSI-DQFTF  328 (697)
T ss_pred             HHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCC--------------HHHHHHHHHHHHHcCCCC-CHHHH
Confidence            4577789999999999865   45578889999999999998              77787777777653  33 34456


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHH----------------------------HHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010976          208 YNWAIAISDRAKMRGRTKEAEELWK----------------------------QATKNYEKAVQLNWNSPQALNNWGLAL  259 (496)
Q Consensus       208 ~~lg~~~~~~~~~~g~~~eA~~~~~----------------------------~A~~~~~~Al~l~P~~~~a~~~lg~~l  259 (496)
                      ..+..++..    .|++++|.+.+.                            .|...|++..+   .+...|+.+...|
T Consensus       329 ~~ll~a~~~----~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y  401 (697)
T PLN03081        329 SIMIRIFSR----LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGY  401 (697)
T ss_pred             HHHHHHHHh----ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHH
Confidence            666666666    666666555442                            23355554432   3567788888888


Q ss_pred             HHccCcchH
Q 010976          260 QELSAIVPA  268 (496)
Q Consensus       260 ~~~g~~~~A  268 (496)
                      .+.|+.++|
T Consensus       402 ~~~G~~~~A  410 (697)
T PLN03081        402 GNHGRGTKA  410 (697)
T ss_pred             HHcCCHHHH
Confidence            888888444

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=2.5e-05  Score=80.70  Aligned_cols=136  Identities=18%  Similarity=0.134  Sum_probs=102.6

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976          134 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA  213 (496)
Q Consensus       134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  213 (496)
                      ..++|++|+....+.+...|++.++.+..-.++.+.++              |++|++..++-..+.-.+ ...+..+.|
T Consensus        24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~k--------------y~~ALk~ikk~~~~~~~~-~~~fEKAYc   88 (652)
T KOG2376|consen   24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDK--------------YEDALKLIKKNGALLVIN-SFFFEKAYC   88 (652)
T ss_pred             cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhH--------------HHHHHHHHHhcchhhhcc-hhhHHHHHH
Confidence            35889999999999999999999999999999999998              999885544433222222 222678888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHH------
Q 010976          214 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ------  287 (496)
Q Consensus       214 ~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~------  287 (496)
                      .++    +++.++|+       ..+.   .+++.+..++...|.+++++|+|          ++|+..|+..++      
T Consensus        89 ~Yr----lnk~Deal-------k~~~---~~~~~~~~ll~L~AQvlYrl~~y----------dealdiY~~L~kn~~dd~  144 (652)
T KOG2376|consen   89 EYR----LNKLDEAL-------KTLK---GLDRLDDKLLELRAQVLYRLERY----------DEALDIYQHLAKNNSDDQ  144 (652)
T ss_pred             HHH----cccHHHHH-------HHHh---cccccchHHHHHHHHHHHHHhhH----------HHHHHHHHHHHhcCCchH
Confidence            888    99999999       6666   56777788888999999999999          555544444432      


Q ss_pred             ------------------------hcCC-CHHHHHHHHHHHHHcch
Q 010976          288 ------------------------LQFD-FHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       288 ------------------------l~P~-~~~a~~~lg~~~~~~g~  308 (496)
                                              ..|. ..+.+||.+.++...|+
T Consensus       145 d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gk  190 (652)
T KOG2376|consen  145 DEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGK  190 (652)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhccc
Confidence                                    2233 56788888888888888

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=2.2e-06  Score=79.24  Aligned_cols=93  Identities=20%  Similarity=0.098  Sum_probs=84.8

Q ss_pred             hhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010976          130 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN  209 (496)
Q Consensus       130 ~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~  209 (496)
                      ..++.-..|..||.+|.++|.++|..+..|.+.+.+|+++.+              ++.......+|++++|+...+++.
T Consensus        18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~--------------~~~v~~dcrralql~~N~vk~h~f   83 (284)
T KOG4642|consen   18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKH--------------WEPVEEDCRRALQLDPNLVKAHYF   83 (284)
T ss_pred             ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhh--------------hhhhhhhHHHHHhcChHHHHHHHH
Confidence            334556789999999999999999999999999999999999              999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 010976          210 WAIAISDRAKMRGRTKEAEELWKQATKNYEK  240 (496)
Q Consensus       210 lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~  240 (496)
                      +|.++..    ...|++|+..+++|...++.
T Consensus        84 lg~~~l~----s~~~~eaI~~Lqra~sl~r~  110 (284)
T KOG4642|consen   84 LGQWLLQ----SKGYDEAIKVLQRAYSLLRE  110 (284)
T ss_pred             HHHHHHh----hccccHHHHHHHHHHHHHhc
Confidence            9999999    99999999777777666654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.32  E-value=1.3e-05  Score=76.30  Aligned_cols=104  Identities=24%  Similarity=0.298  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010976          159 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQAT  235 (496)
Q Consensus       159 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~  235 (496)
                      .|+.|.-++..|+              |..|...|..-++..|+.   +.++|.||.+++.    +|++.+|.       
T Consensus       144 ~Y~~A~~~~ksgd--------------y~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~----qg~y~~Aa-------  198 (262)
T COG1729         144 LYNAALDLYKSGD--------------YAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA----QGDYEDAA-------  198 (262)
T ss_pred             HHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh----cccchHHH-------
Confidence            7899999999999              999999999999999984   6899999999999    99999999       


Q ss_pred             HHHHHHHhcCCC---CHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010976          236 KNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY  297 (496)
Q Consensus       236 ~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~  297 (496)
                      ..|..+++-.|+   -+++++.||.++..+|+.          ++|...|+++++..|+...+..
T Consensus       199 ~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~----------d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         199 YIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT----------DEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             HHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHHCCCCHHHHH
Confidence            677777766655   578999999999999999          9999999999999999876644

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.31  E-value=4.3e-06  Score=82.43  Aligned_cols=154  Identities=15%  Similarity=0.083  Sum_probs=116.4

Q ss_pred             hhhhcHHHHHHHHHHhhccc-----hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchh
Q 010976          109 QLAEQNNAAMELINSVTGVD-----EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKD  183 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~l~~~-----~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~  183 (496)
                      ...|+++.|+..+.+.-...     -+.+.+.++++.|.+.++..-+.+.+..-....-+++....|.            
T Consensus       113 ~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~------------  180 (290)
T PF04733_consen  113 FHEGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGG------------  180 (290)
T ss_dssp             CCCCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT------------
T ss_pred             HHcCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc------------
Confidence            34577777777666542111     3456778999999999999988887766555555666666663            


Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 010976          184 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS  263 (496)
Q Consensus       184 ~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g  263 (496)
                      +.+.+|.-.|+......+.++..++.++.++..    +|++++|.       ..+.+++..+|+++.++.|+..+...+|
T Consensus       181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~----~~~~~eAe-------~~L~~al~~~~~~~d~LaNliv~~~~~g  249 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ----LGHYEEAE-------ELLEEALEKDPNDPDTLANLIVCSLHLG  249 (290)
T ss_dssp             TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH----CT-HHHHH-------HHHHHHCCC-CCHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----hCCHHHHH-------HHHHHHHHhccCCHHHHHHHHHHHHHhC
Confidence            238999999999888888999999999999999    99999999       7888899999999999999999999999


Q ss_pred             CcchHHHhhhhHHH-HHHHHHHHHHhcCCCHHH
Q 010976          264 AIVPAREKQTIVRT-AISKFRAAIQLQFDFHRA  295 (496)
Q Consensus       264 ~~~~A~~~~~~~~~-Ai~~~~~Al~l~P~~~~a  295 (496)
                      +.          .+ +.+.+.+....+|+++..
T Consensus       250 k~----------~~~~~~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  250 KP----------TEAAERYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             -T----------CHHHHHHHHHCHHHTTTSHHH
T ss_pred             CC----------hhHHHHHHHHHHHhCCCChHH
Confidence            97          44 445666666678887753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.31  E-value=1.9e-05  Score=80.66  Aligned_cols=99  Identities=17%  Similarity=0.087  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      ++.|+..|++..+.+|+   +...++.++..    .++-.+|+       ..+.+++..+|.+...+...+..+...+++
T Consensus       185 ~~~ai~lle~L~~~~pe---v~~~LA~v~l~----~~~E~~AI-------~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~  250 (395)
T PF09295_consen  185 YDEAIELLEKLRERDPE---VAVLLARVYLL----MNEEVEAI-------RLLNEALKENPQDSELLNLQAEFLLSKKKY  250 (395)
T ss_pred             HHHHHHHHHHHHhcCCc---HHHHHHHHHHh----cCcHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence            99999999999998876   56668888887    88888887       888999999999999999999999999999


Q ss_pred             chHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          266 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       266 ~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                                +.|+...++|+.+.|++...|+.|+.+|..+|+
T Consensus       251 ----------~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d  283 (395)
T PF09295_consen  251 ----------ELALEIAKKAVELSPSEFETWYQLAECYIQLGD  283 (395)
T ss_pred             ----------HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC
Confidence                      999999999999999999999999999999998

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.27  E-value=2.3e-05  Score=67.79  Aligned_cols=116  Identities=22%  Similarity=0.223  Sum_probs=97.0

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010976          155 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFYNWAIAISDRAKMRGRTKEAEELW  231 (496)
Q Consensus       155 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~~~~~~~~~g~~~eA~~~~  231 (496)
                      .+..++.-|.-.++.|+              |++|++.|+......|.   -..+...||.+|+.    .+++++|+   
T Consensus         9 ~~~~ly~~a~~~l~~~~--------------Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~----~~~y~~A~---   67 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGN--------------YEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK----QGDYEEAI---   67 (142)
T ss_pred             CHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH----ccCHHHHH---
Confidence            35678889999999999              99999999999999886   45789999999999    99999999   


Q ss_pred             HHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccCc-----chHHHhhhhHHHHHHHHHHHHHhcCCCHHH
Q 010976          232 KQATKNYEKAVQLNWNSP---QALNNWGLALQELSAI-----VPAREKQTIVRTAISKFRAAIQLQFDFHRA  295 (496)
Q Consensus       232 ~~A~~~~~~Al~l~P~~~---~a~~~lg~~l~~~g~~-----~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a  295 (496)
                          ..+++-|+++|+++   .+++..|.+++.+..-     -..-...+....|...|++.++.-|++..+
T Consensus        68 ----a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   68 ----AAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             ----HHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence                89999999999875   5789999999887650     000224455689999999999999997643

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.25  E-value=0.00014  Score=68.72  Aligned_cols=162  Identities=20%  Similarity=0.122  Sum_probs=123.3

Q ss_pred             HHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHH
Q 010976          115 NAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACK  191 (496)
Q Consensus       115 ~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~  191 (496)
                      .++..+|++++...     ..|+|++|+..|+.+....|..   ..+...++.++++.++              +++|+.
T Consensus        32 ~p~~~LY~~g~~~L-----~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~--------------y~~A~~   92 (254)
T COG4105          32 LPASELYNEGLTEL-----QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGE--------------YDLALA   92 (254)
T ss_pred             CCHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhccc--------------HHHHHH
Confidence            35667777766544     4699999999999999999876   4788899999999999              999999


Q ss_pred             HHHHHHHhCCCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH-----------------
Q 010976          192 KYDEATRLCPTLH---DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA-----------------  251 (496)
Q Consensus       192 ~~~~Al~l~P~~~---~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a-----------------  251 (496)
                      ..++-+.+.|+++   -++|..|.+++..   ..+...=...-.+|+..++..++.-|++.-+                 
T Consensus        93 ~~drFi~lyP~~~n~dY~~YlkgLs~~~~---i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~  169 (254)
T COG4105          93 YIDRFIRLYPTHPNADYAYYLKGLSYFFQ---IDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH  169 (254)
T ss_pred             HHHHHHHhCCCCCChhHHHHHHHHHHhcc---CCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH
Confidence            9999999998865   4678888887652   2222222223356778999999999985321                 


Q ss_pred             HHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcch
Q 010976          252 LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF---HRAIYNLGTVLYGLAE  308 (496)
Q Consensus       252 ~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~---~~a~~~lg~~~~~~g~  308 (496)
                      =..+|..|.+.|.+          -.|+.-++.+++--|+.   .+++..+..+|..+|-
T Consensus       170 Em~IaryY~kr~~~----------~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl  219 (254)
T COG4105         170 EMAIARYYLKRGAY----------VAAINRFEEVLENYPDTSAVREALARLEEAYYALGL  219 (254)
T ss_pred             HHHHHHHHHHhcCh----------HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCC
Confidence            12345566666666          99999999999986654   4788888999999995

>PLN03077 Protein ECB2; Provisional

Probab=98.22  E-value=0.00012  Score=83.67  Aligned_cols=83  Identities=13%  Similarity=0.120  Sum_probs=48.0

Q ss_pred             hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCC--CCCCCCcH--------------HHHHHHHHH
Q 010976          271 KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTV--NPREVSPN--------------ELYSQSAIY  334 (496)
Q Consensus       271 ~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~--~~~~~~~~--------------~~~~~A~~~  334 (496)
                      +.|++++|...|+..    +.+...|+.+...|...|+...+.....  ......|.              ..+.++..+
T Consensus       536 k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~  611 (857)
T PLN03077        536 RCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY  611 (857)
T ss_pred             HcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH
Confidence            455668888888775    4567778888888888887544332211  00111111              125667777


Q ss_pred             HHHHH---hcCCcHHHHHHHHHhhhc
Q 010976          335 IAAAH---ALKPSYSVYSSALRLVRS  357 (496)
Q Consensus       335 ~~~a~---~l~p~~~~y~~al~~~~~  357 (496)
                      |+...   .+.|+...|...+..+-+
T Consensus       612 f~~M~~~~gi~P~~~~y~~lv~~l~r  637 (857)
T PLN03077        612 FHSMEEKYSITPNLKHYACVVDLLGR  637 (857)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHh
Confidence            77665   346776666665555433

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.18  E-value=0.0001  Score=84.53  Aligned_cols=191  Identities=15%  Similarity=0.037  Sum_probs=136.6

Q ss_pred             hhhhcHHHHHHHHHHhhccc----------------hhhhHhhccHHHHHHHHHHHHHhCCC--------CHHHHHHHHH
Q 010976          109 QLAEQNNAAMELINSVTGVD----------------EEGRSRQRILTFAAKRYANAIERNPE--------DYDALYNWAL  164 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~l~~~----------------~~~~~~~g~~~~Ai~~~~~al~~~P~--------~~~a~~~lg~  164 (496)
                      ...|+++.|...+.+++...                +..+..+|++++|...+++++.+...        ...++..+|.
T Consensus       502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  581 (903)
T PRK04841        502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ  581 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence            45678888888887776432                22345679999999999999886321        2344667899


Q ss_pred             HHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 010976          165 VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-----LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE  239 (496)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~-----~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~  239 (496)
                      +++..|+              +++|...+++++.+...     ...++..+|.++..    .|++++|...+.++...+.
T Consensus       582 ~~~~~G~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~l~~a~~~~~  643 (903)
T PRK04841        582 LLWEWAR--------------LDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA----RGDLDNARRYLNRLENLLG  643 (903)
T ss_pred             HHHHhcC--------------HHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHh
Confidence            9999999              99999999999887332     34566778888888    9999999988877755432


Q ss_pred             HHH--------------------------------hcCC--CC----HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHH
Q 010976          240 KAV--------------------------------QLNW--NS----PQALNNWGLALQELSAIVPAREKQTIVRTAISK  281 (496)
Q Consensus       240 ~Al--------------------------------~l~P--~~----~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~  281 (496)
                      ..-                                ...+  ..    ...+.++|.++...|++          ++|+..
T Consensus       644 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~----------~~A~~~  713 (903)
T PRK04841        644 NGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQF----------DEAEII  713 (903)
T ss_pred             cccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCH----------HHHHHH
Confidence            210                                0000  00    01134667777777777          999999


Q ss_pred             HHHHHHhc------CCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          282 FRAAIQLQ------FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       282 ~~~Al~l~------P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                      |++++...      .....++..+|.++...|+                   ...|..++.+|+++.....
T Consensus       714 l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~-------------------~~~A~~~L~~Al~la~~~g  765 (903)
T PRK04841        714 LEELNENARSLRLMSDLNRNLILLNQLYWQQGR-------------------KSEAQRVLLEALKLANRTG  765 (903)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHhCccc
Confidence            99998862      2334678889999999998                   7788888888887765433

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.17  E-value=5e-06  Score=80.77  Aligned_cols=88  Identities=20%  Similarity=0.159  Sum_probs=81.4

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976          134 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA  213 (496)
Q Consensus       134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  213 (496)
                      ..|.++.||+.|..+|.++|..+..|..++.++.++++              ...||..|..|+.++|+.+.-|-.+|.+
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~k--------------p~~airD~d~A~ein~Dsa~~ykfrg~A  191 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKK--------------PNAAIRDCDFAIEINPDSAKGYKFRGYA  191 (377)
T ss_pred             cCcchhhhhcccccccccCCchhhhcccccceeeeccC--------------CchhhhhhhhhhccCcccccccchhhHH
Confidence            46889999999999999999999999999999999999              9999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 010976          214 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW  246 (496)
Q Consensus       214 ~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P  246 (496)
                      ...    +|++.+|.       .+++.+.+++-
T Consensus       192 ~rl----lg~~e~aa-------~dl~~a~kld~  213 (377)
T KOG1308|consen  192 ERL----LGNWEEAA-------HDLALACKLDY  213 (377)
T ss_pred             HHH----hhchHHHH-------HHHHHHHhccc
Confidence            988    99999998       67777777653

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.16  E-value=0.0001  Score=84.61  Aligned_cols=149  Identities=12%  Similarity=-0.030  Sum_probs=115.4

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC----
Q 010976          132 RSRQRILTFAAKRYANAIERNPED-----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----  202 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~-----~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~----  202 (496)
                      ....|++++|...++++++..+..     ..++..+|.++...|+              +++|...+++++.+...    
T Consensus       462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~--------------~~~A~~~~~~al~~~~~~g~~  527 (903)
T PRK04841        462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE--------------LARALAMMQQTEQMARQHDVY  527 (903)
T ss_pred             HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHhhhcch
Confidence            345799999999999999865543     2456788999999999              99999999999987432    


Q ss_pred             --CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHH
Q 010976          203 --LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL-NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI  279 (496)
Q Consensus       203 --~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai  279 (496)
                        ...++.++|.++..    .|++++|...+++++...+..-.. .+.....+..+|.+++..|++          ++|.
T Consensus       528 ~~~~~~~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~----------~~A~  593 (903)
T PRK04841        528 HYALWSLLQQSEILFA----QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARL----------DEAE  593 (903)
T ss_pred             HHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCH----------HHHH
Confidence              12466788999998    999999998888877766653211 122344577889999999999          9999


Q ss_pred             HHHHHHHHhcC-----CCHHHHHHHHHHHHHcch
Q 010976          280 SKFRAAIQLQF-----DFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       280 ~~~~~Al~l~P-----~~~~a~~~lg~~~~~~g~  308 (496)
                      ..+++++.+..     ....++.++|.++...|+
T Consensus       594 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~  627 (903)
T PRK04841        594 QCARKGLEVLSNYQPQQQLQCLAMLAKISLARGD  627 (903)
T ss_pred             HHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCC
Confidence            99999988632     235567778889999998

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.13  E-value=5.2e-05  Score=72.23  Aligned_cols=97  Identities=18%  Similarity=0.212  Sum_probs=87.6

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC---HHH
Q 010976          133 SRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDA  206 (496)
Q Consensus       133 ~~~g~~~~Ai~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~---~~a  206 (496)
                      ++.|+|..|...|..-++..|+.   +.++|.||.+++.+|+              |+.|...|..+++-.|++   +++
T Consensus       152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~--------------y~~Aa~~f~~~~k~~P~s~KApda  217 (262)
T COG1729         152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGD--------------YEDAAYIFARVVKDYPKSPKAPDA  217 (262)
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhccc--------------chHHHHHHHHHHHhCCCCCCChHH
Confidence            35699999999999999999986   6899999999999999              999999999999997774   688


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010976          207 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN  254 (496)
Q Consensus       207 ~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~  254 (496)
                      ++.+|.++..    +|+.++|.       ..|++.++..|+...+..-
T Consensus       218 llKlg~~~~~----l~~~d~A~-------atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         218 LLKLGVSLGR----LGNTDEAC-------ATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             HHHHHHHHHH----hcCHHHHH-------HHHHHHHHHCCCCHHHHHH
Confidence            9999999999    99999999       8889999999988776543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.13  E-value=5.2e-05  Score=65.57  Aligned_cols=101  Identities=25%  Similarity=0.246  Sum_probs=82.7

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH---HH
Q 010976          133 SRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DA  206 (496)
Q Consensus       133 ~~~g~~~~Ai~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~---~a  206 (496)
                      ...|+|.+|++.|+......|..   ..+...++.+|+..++              +++|+..+++-|+++|+++   .+
T Consensus        21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~--------------y~~A~a~~~rFirLhP~hp~vdYa   86 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGD--------------YEEAIAAYDRFIRLHPTHPNVDYA   86 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCCCCccHH
Confidence            35699999999999999998865   5789999999999999              9999999999999999876   57


Q ss_pred             HHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 010976          207 FYNWAIAISDRAKMRGR--------TKEAEELWKQATKNYEKAVQLNWNSPQA  251 (496)
Q Consensus       207 ~~~lg~~~~~~~~~~g~--------~~eA~~~~~~A~~~~~~Al~l~P~~~~a  251 (496)
                      +|..|.+++.    +..        .+.=.....+|...|++.+..-|++..+
T Consensus        87 ~Y~~gL~~~~----~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   87 YYMRGLSYYE----QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHHHH----HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            8999999988    543        1112223455669999999999987654

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.09  E-value=0.00012  Score=74.77  Aligned_cols=194  Identities=22%  Similarity=0.154  Sum_probs=127.4

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh-------CC-----
Q 010976          134 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-------CP-----  201 (496)
Q Consensus       134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-------~P-----  201 (496)
                      +..+.+.-++.-.+||+++|+.+++|..|+.-...  -              ..+|.++|+++++.       +.     
T Consensus       180 RERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~--T--------------i~Eae~l~rqAvkAgE~~lg~s~~~~~~  243 (539)
T PF04184_consen  180 RERNPQARIKAAKEALEINPDCADAYILLAEEEAS--T--------------IVEAEELLRQAVKAGEASLGKSQFLQHH  243 (539)
T ss_pred             hcCCHHHHHHHHHHHHHhhhhhhHHHhhccccccc--C--------------HHHHHHHHHHHHHHHHHhhchhhhhhcc
Confidence            35677889999999999999999999887653221  1              45555555555554       11     


Q ss_pred             -----------C--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCcc
Q 010976          202 -----------T--LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSAIV  266 (496)
Q Consensus       202 -----------~--~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~l~~~g~~~  266 (496)
                                 .  ...+-..+|+|..+    +|+.+||+       +.|+..++.+|.  +..++.||-.+|..++.| 
T Consensus       244 g~~~e~~~~Rdt~~~~y~KrRLAmCark----lGr~~EAI-------k~~rdLlke~p~~~~l~IrenLie~LLelq~Y-  311 (539)
T PF04184_consen  244 GHFWEAWHRRDTNVLVYAKRRLAMCARK----LGRLREAI-------KMFRDLLKEFPNLDNLNIRENLIEALLELQAY-  311 (539)
T ss_pred             cchhhhhhccccchhhhhHHHHHHHHHH----hCChHHHH-------HHHHHHHhhCCccchhhHHHHHHHHHHhcCCH-
Confidence                       0  02344678888888    99999999       888988887775  567899999999999999 


Q ss_pred             hHHHhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcH
Q 010976          267 PAREKQTIVRTAISKFRAAIQL-QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  345 (496)
Q Consensus       267 ~A~~~~~~~~~Ai~~~~~Al~l-~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~  345 (496)
                               .++...+.+-=.+ -|+.+...|.-+.+..+...+..... .......++++  ..|.+.+.+|.+.+|..
T Consensus       312 ---------ad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e-~a~rRGls~ae--~~aveAi~RAvefNPHV  379 (539)
T PF04184_consen  312 ---------ADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPE-AASRRGLSPAE--MNAVEAIHRAVEFNPHV  379 (539)
T ss_pred             ---------HHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCch-hhhhcCCChhH--HHHHHHHHHHHHhCCCC
Confidence                     7777777664222 26677777777665544332110000 00001123333  45788899999999999


Q ss_pred             HHHHHHHHhhhcCCchhhhhhcc
Q 010976          346 SVYSSALRLVRSMLPLPYLKAGY  368 (496)
Q Consensus       346 ~~y~~al~~~~~~~p~~~l~~g~  368 (496)
                      +.|---.+-+. .-|...+++|.
T Consensus       380 p~YLLe~K~Li-lPPehilkrGD  401 (539)
T PF04184_consen  380 PKYLLEMKSLI-LPPEHILKRGD  401 (539)
T ss_pred             chhhhccCCCC-CChHHhcCCCc
Confidence            98865554442 11333555553

The molecular function of this protein is uncertain.

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain

Probab=98.07  E-value=6.1e-06  Score=68.62  Aligned_cols=99  Identities=17%  Similarity=0.215  Sum_probs=70.0

Q ss_pred             hccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCC-
Q 010976          366 AGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP-  444 (496)
Q Consensus       366 ~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  444 (496)
                      .|++.-............|.++||+|....|..+......              .....-.|+|..+.+++++.+-.-+ 
T Consensus         3 ~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~--------------~~~~kG~I~L~~~~~ve~~~~~~~~~   68 (106)
T cd01238           3 ESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEK--------------RGSKKGSIDLSKIKCVETVKPEKNPP   68 (106)
T ss_pred             ceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCccc--------------ccCcceeEECCcceEEEEecCCcCcc
Confidence            4556555444444455689999999987777665432221              1123568999999888877665433 


Q ss_pred             ----CCCeeeEeecCCceeeeecChhhhhhHHHHHHHH
Q 010976          445 ----PGAGLCIETIHGPVFLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       445 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  478 (496)
                          ....|.|.|.....|+.|+|.++.++|++||+.|
T Consensus        69 ~~~~~~~~F~i~t~~r~~yl~A~s~~er~~WI~ai~~~  106 (106)
T cd01238          69 IPERFKYPFQVVHDEGTLYVFAPTEELRKRWIKALKQV  106 (106)
T ss_pred             cccccCccEEEEeCCCeEEEEcCCHHHHHHHHHHHHhC
Confidence                4677888876666799999999999999999865

Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.06  E-value=5.9e-06  Score=83.77  Aligned_cols=106  Identities=22%  Similarity=0.168  Sum_probs=96.9

Q ss_pred             hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010976          182 KDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE  261 (496)
Q Consensus       182 ~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~  261 (496)
                      ..+.|+.|+..|.+||+++|+++..+-+++.++..    .+.+..|+       ..+.+|++++|.+..+|+..|.+...
T Consensus        16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK----~e~~~~Al-------~Da~kaie~dP~~~K~Y~rrg~a~m~   84 (476)
T KOG0376|consen   16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK----VESFGGAL-------HDALKAIELDPTYIKAYVRRGTAVMA   84 (476)
T ss_pred             ccchHHHHHHHHHHHHhcCCcceeeechhhhhhee----echhhhHH-------HHHHhhhhcCchhhheeeeccHHHHh
Confidence            33449999999999999999999999999999999    88888888       89999999999999999999999999


Q ss_pred             ccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          262 LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       262 ~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                      ++++          .+|...|++...+.|+++.+...+-.|-.-..+
T Consensus        85 l~~~----------~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~  121 (476)
T KOG0376|consen   85 LGEF----------KKALLDLEKVKKLAPNDPDATRKIDECNKIVSE  121 (476)
T ss_pred             HHHH----------HHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence            9999          999999999999999999998888777654444

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.06  E-value=0.00026  Score=66.62  Aligned_cols=137  Identities=17%  Similarity=0.196  Sum_probs=113.5

Q ss_pred             hHhhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHH----hCC--CCH
Q 010976          132 RSRQRILTFAAKRYANAIERN-PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR----LCP--TLH  204 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~----l~P--~~~  204 (496)
                      ..-.|+|.-.+..+.+.++.+ |.++.....||.+..+.|+              .+.|..+|++.-+    ++-  .+.
T Consensus       187 llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD--------------~k~a~~yf~~vek~~~kL~~~q~~~  252 (366)
T KOG2796|consen  187 LLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGD--------------IKTAEKYFQDVEKVTQKLDGLQGKI  252 (366)
T ss_pred             HhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhccc--------------HHHHHHHHHHHHHHHhhhhccchhH
Confidence            334588999999999999998 6788899999999999999              9999999995433    332  234


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHH
Q 010976          205 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA  284 (496)
Q Consensus       205 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~  284 (496)
                      .+..+.+.+|..    .+++.+|.       ..|.+++..||.++.+-+|.+.|+..+|+.          .+|++..+.
T Consensus       253 ~V~~n~a~i~lg----~nn~a~a~-------r~~~~i~~~D~~~~~a~NnKALcllYlg~l----------~DAiK~~e~  311 (366)
T KOG2796|consen  253 MVLMNSAFLHLG----QNNFAEAH-------RFFTEILRMDPRNAVANNNKALCLLYLGKL----------KDALKQLEA  311 (366)
T ss_pred             HHHhhhhhheec----ccchHHHH-------HHHhhccccCCCchhhhchHHHHHHHHHHH----------HHHHHHHHH
Confidence            566777777777    88888888       899999999999999999999999999999          999999999


Q ss_pred             HHHhcCCCH---HHHHHHHHHH
Q 010976          285 AIQLQFDFH---RAIYNLGTVL  303 (496)
Q Consensus       285 Al~l~P~~~---~a~~~lg~~~  303 (496)
                      ++.+.|...   ...+||-..|
T Consensus       312 ~~~~~P~~~l~es~~~nL~tmy  333 (366)
T KOG2796|consen  312 MVQQDPRHYLHESVLFNLTTMY  333 (366)
T ss_pred             HhccCCccchhhhHHHHHHHHH
Confidence            999999743   4555665544

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.98  E-value=1.5e-05  Score=54.78  Aligned_cols=43  Identities=21%  Similarity=0.104  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976          156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  212 (496)
Q Consensus       156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  212 (496)
                      ++++..+|.+|..+|+              +++|++.|+++++.+|++..+|..+|.
T Consensus         1 p~~~~~la~~~~~~G~--------------~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQ--------------PDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            4679999999999999              999999999999999999999999875

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.97  E-value=0.00055  Score=61.37  Aligned_cols=109  Identities=17%  Similarity=0.193  Sum_probs=94.7

Q ss_pred             hhHhhccHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC--CHHHH
Q 010976          131 GRSRQRILTFAAKRYANAIE-RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--LHDAF  207 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~-~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~--~~~a~  207 (496)
                      .....|++.+|..+|++++. +.-+++..+..++...+..++              +..|...+++..+.+|.  .++..
T Consensus        98 al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~--------------~A~a~~tLe~l~e~~pa~r~pd~~  163 (251)
T COG4700          98 ALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE--------------FAAAQQTLEDLMEYNPAFRSPDGH  163 (251)
T ss_pred             HHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHhhcCCccCCCCch
Confidence            45567999999999999986 567889999999999999999              99999999999999987  56778


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          208 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       208 ~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      ..+|.+|..    +|++.+|.       ..|+.++...| .+++....+..+..+|+.
T Consensus       164 Ll~aR~laa----~g~~a~Ae-------safe~a~~~yp-g~~ar~~Y~e~La~qgr~  209 (251)
T COG4700         164 LLFARTLAA----QGKYADAE-------SAFEVAISYYP-GPQARIYYAEMLAKQGRL  209 (251)
T ss_pred             HHHHHHHHh----cCCchhHH-------HHHHHHHHhCC-CHHHHHHHHHHHHHhcch
Confidence            888999999    99999999       56666666555 577888889999999988

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.96  E-value=1.1e-05  Score=81.76  Aligned_cols=103  Identities=24%  Similarity=0.234  Sum_probs=94.7

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976          133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  212 (496)
Q Consensus       133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  212 (496)
                      ...+.|+.|+..|.+||+++|+.+..+.+++..+.+.++              |..|+..+.+|++++|....+|+..|.
T Consensus        15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~--------------~~~Al~Da~kaie~dP~~~K~Y~rrg~   80 (476)
T KOG0376|consen   15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVES--------------FGGALHDALKAIELDPTYIKAYVRRGT   80 (476)
T ss_pred             cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeech--------------hhhHHHHHHhhhhcCchhhheeeeccH
Confidence            345889999999999999999999999999999999999              999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010976          213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ  260 (496)
Q Consensus       213 ~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~  260 (496)
                      +...    ++++.+|+       ..|++...+.|+.+.+...+-.+-.
T Consensus        81 a~m~----l~~~~~A~-------~~l~~~~~l~Pnd~~~~r~~~Ec~~  117 (476)
T KOG0376|consen   81 AVMA----LGEFKKAL-------LDLEKVKKLAPNDPDATRKIDECNK  117 (476)
T ss_pred             HHHh----HHHHHHHH-------HHHHHhhhcCcCcHHHHHHHHHHHH
Confidence            9998    88888888       8999999999999998887776654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.95  E-value=1.6e-05  Score=54.67  Aligned_cols=44  Identities=25%  Similarity=0.175  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010976          249 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV  302 (496)
Q Consensus       249 ~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~  302 (496)
                      +.++..+|.+|..+|++          ++|+..|+++++.+|+++.++..||.+
T Consensus         1 p~~~~~la~~~~~~G~~----------~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQP----------DEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             CHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            36789999999999999          999999999999999999999999863

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.95  E-value=0.0002  Score=69.90  Aligned_cols=36  Identities=14%  Similarity=0.156  Sum_probs=32.6

Q ss_pred             hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          273 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       273 ~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                      -.+++||..|.++|.-+|+....-.+++.||+++.-
T Consensus       165 ~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDY  200 (557)
T KOG3785|consen  165 MHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDY  200 (557)
T ss_pred             HHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcch
Confidence            456999999999999999999999999999999885

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.93  E-value=1.2e-05  Score=51.99  Aligned_cols=33  Identities=30%  Similarity=0.360  Sum_probs=31.4

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q 010976          192 KYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAE  228 (496)
Q Consensus       192 ~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~  228 (496)
                      +|++||+++|+++.+|++||.+|..    .|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~----~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLN----QGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHH----CcCHHhhc
Confidence            4899999999999999999999999    99999986

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.92  E-value=8.7e-06  Score=52.60  Aligned_cols=29  Identities=31%  Similarity=0.344  Sum_probs=27.9

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          237 NYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       237 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      +|++||+++|+++.+|+++|.+|...|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~   29 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDY   29 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCH
Confidence            48899999999999999999999999999

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=0.00021  Score=66.57  Aligned_cols=118  Identities=15%  Similarity=0.126  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-hcCCCC----------HHHHHHHHHHHHHccCcchHHHhhh
Q 010976          205 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV-QLNWNS----------PQALNNWGLALQELSAIVPAREKQT  273 (496)
Q Consensus       205 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al-~l~P~~----------~~a~~~lg~~l~~~g~~~~A~~~~~  273 (496)
                      .++...|+-++.    +|+|.+|...|+.|+.+++... +-.|..          ...+.|++.|+...|+|        
T Consensus       179 ~~l~q~GN~lfk----~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~--------  246 (329)
T KOG0545|consen  179 PVLHQEGNRLFK----LGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY--------  246 (329)
T ss_pred             HHHHHhhhhhhh----hccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH--------
Confidence            466778888888    9999999999999999888754 334544          45688999999999999        


Q ss_pred             hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH-HHHHHH
Q 010976          274 IVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS-VYSSAL  352 (496)
Q Consensus       274 ~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~-~y~~al  352 (496)
                        -+++++....|..+|.|..+++..|.++...=+                   ..+|...|.++++++|... +..+-+
T Consensus       247 --yevleh~seiL~~~~~nvKA~frRakAhaa~Wn-------------------~~eA~~D~~~vL~ldpslasvVsrEl  305 (329)
T KOG0545|consen  247 --YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWN-------------------EAEAKADLQKVLELDPSLASVVSREL  305 (329)
T ss_pred             --HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcC-------------------HHHHHHHHHHHHhcChhhHHHHHHHH
Confidence              999999999999999999999999988765554                   4678888999999999877 444444


Q ss_pred             Hhh
Q 010976          353 RLV  355 (496)
Q Consensus       353 ~~~  355 (496)
                      +++
T Consensus       306 r~l  308 (329)
T KOG0545|consen  306 RLL  308 (329)
T ss_pred             HHH
Confidence            443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.83  E-value=0.00068  Score=69.45  Aligned_cols=113  Identities=24%  Similarity=0.158  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC----------------C--
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW----------------N--  247 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P----------------~--  247 (496)
                      .++-++.-++||+++|+.+++|..|+.-.      ..-..+|.+.|++|++.-+..+..+.                .  
T Consensus       184 p~aRIkaA~eALei~pdCAdAYILLAEEe------A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~  257 (539)
T PF04184_consen  184 PQARIKAAKEALEINPDCADAYILLAEEE------ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV  257 (539)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHhhccccc------ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence            88899999999999999999999887543      34567899999998887777665432                0  


Q ss_pred             CHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcchhHHhcc
Q 010976          248 SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD--FHRAIYNLGTVLYGLAEDTLRTG  314 (496)
Q Consensus       248 ~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~--~~~a~~~lg~~~~~~g~~~~a~~  314 (496)
                      ...+..++|.+.+++|+.          ++|++.|+..++..|.  +-.+++||-.++..++.......
T Consensus       258 ~~y~KrRLAmCarklGr~----------~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~  316 (539)
T PF04184_consen  258 LVYAKRRLAMCARKLGRL----------REAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA  316 (539)
T ss_pred             hhhhHHHHHHHHHHhCCh----------HHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence            134567899999999999          9999999999998775  56799999999999998655443

The molecular function of this protein is uncertain.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.00016  Score=67.37  Aligned_cols=104  Identities=14%  Similarity=0.084  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh--------CCCCH----------HHHHHHHHHHHHHH
Q 010976          157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--------CPTLH----------DAFYNWAIAISDRA  218 (496)
Q Consensus       157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--------~P~~~----------~a~~~lg~~~~~~~  218 (496)
                      .++...|+-++..|+              |.+|...|+.|+..        .|..+          ..+.|+..|+..  
T Consensus       179 ~~l~q~GN~lfk~~~--------------ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~--  242 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGR--------------YKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK--  242 (329)
T ss_pred             HHHHHhhhhhhhhcc--------------HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh--
Confidence            456677777777777              99999999999865        45443          467899999999  


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHH
Q 010976          219 KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA  295 (496)
Q Consensus       219 ~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a  295 (496)
                        .|+|-+++       +.+...|..+|.|..+|+..|.+....=+.          ++|.+.|.++|+++|.-..+
T Consensus       243 --~~e~yevl-------eh~seiL~~~~~nvKA~frRakAhaa~Wn~----------~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  243 --KEEYYEVL-------EHCSEILRHHPGNVKAYFRRAKAHAAVWNE----------AEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             --HHHHHHHH-------HHHHHHHhcCCchHHHHHHHHHHHHhhcCH----------HHHHHHHHHHHhcChhhHHH
Confidence              88888888       899999999999999999999999888888          99999999999999975543

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=0.00017  Score=70.05  Aligned_cols=100  Identities=17%  Similarity=0.106  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010976          158 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL---CPT-LHDAFYNWAIAISDRAKMRGRTKEAEELWKQ  233 (496)
Q Consensus       158 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l---~P~-~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~  233 (496)
                      -+..-|+-|+...+              |..|+.+|.++|+.   +|+ ++..|.|++.|...    +|+|..++     
T Consensus        83 n~KeeGN~~fK~Kr--------------yk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~----l~NyRs~l-----  139 (390)
T KOG0551|consen   83 NYKEEGNEYFKEKR--------------YKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY----LGNYRSAL-----  139 (390)
T ss_pred             HHHHHhHHHHHhhh--------------HHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH----HHHHHHHH-----
Confidence            34455888888888              99999999999998   344 56789999999998    66666666     


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976          234 ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  292 (496)
Q Consensus       234 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~  292 (496)
                        ..+.+++.++|.+..++++-+.|+.++.++          ++|+.+++..+.++-+.
T Consensus       140 --~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~----------~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  140 --NDCSAALKLKPTHLKAYIRGAKCLLELERF----------AEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             --HHHHHHHhcCcchhhhhhhhhHHHHHHHHH----------HHHHHHHhhhhhhhHHH
Confidence              999999999999999999999999999999          88888888887776543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.73  E-value=0.0025  Score=60.39  Aligned_cols=140  Identities=16%  Similarity=0.077  Sum_probs=111.3

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  211 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  211 (496)
                      +...+++++|++.....     .+.++...--.|+.++.+              ++-|.+.+++..+++-+  ..+..|+
T Consensus       118 ~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r--------------~d~A~~~lk~mq~ided--~tLtQLA  176 (299)
T KOG3081|consen  118 YMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHR--------------FDLAEKELKKMQQIDED--ATLTQLA  176 (299)
T ss_pred             hhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHccchH--HHHHHHH
Confidence            45568888888877663     345666666778888888              99999999999887643  4566677


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976          212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  291 (496)
Q Consensus       212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~  291 (496)
                      .++...+.-.+++.+|.       -.|+..-+..|-.+..++..+.+...+|++          ++|...++.||..+++
T Consensus       177 ~awv~la~ggek~qdAf-------yifeE~s~k~~~T~~llnG~Av~~l~~~~~----------eeAe~lL~eaL~kd~~  239 (299)
T KOG3081|consen  177 QAWVKLATGGEKIQDAF-------YIFEELSEKTPPTPLLLNGQAVCHLQLGRY----------EEAESLLEEALDKDAK  239 (299)
T ss_pred             HHHHHHhccchhhhhHH-------HHHHHHhcccCCChHHHccHHHHHHHhcCH----------HHHHHHHHHHHhccCC
Confidence            77766333334455555       788888887777899999999999999999          9999999999999999


Q ss_pred             CHHHHHHHHHHHHHcchh
Q 010976          292 FHRAIYNLGTVLYGLAED  309 (496)
Q Consensus       292 ~~~a~~~lg~~~~~~g~~  309 (496)
                      +++.+.|+-.+-..+|++
T Consensus       240 dpetL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  240 DPETLANLIVLALHLGKD  257 (299)
T ss_pred             CHHHHHHHHHHHHHhCCC
Confidence            999999999999999975

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.73  E-value=0.00061  Score=65.27  Aligned_cols=139  Identities=18%  Similarity=0.112  Sum_probs=99.8

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCC---------CCCCCcchhhhHHHHHHH-------
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS---------LDSTSPSKDALLEEACKK-------  192 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~---------~~~~~~~~~~~~~~A~~~-------  192 (496)
                      +.|++...+|..|..+|++.-.+.|....-....+..+++.+...+         ....-....=.++.||++       
T Consensus        51 gyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g  130 (459)
T KOG4340|consen   51 GYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPG  130 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcc
Confidence            6678889999999999999999999987777767777777666100         000000000012222221       


Q ss_pred             HHHHHHhCC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHH
Q 010976          193 YDEATRLCP--TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE  270 (496)
Q Consensus       193 ~~~Al~l~P--~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~  270 (496)
                      .+..++.-|  +.++...+.|.++++    .|++++|+       +-|+.|++..--++-.-+|++.++++.|++     
T Consensus       131 ~rsLveQlp~en~Ad~~in~gCllyk----egqyEaAv-------qkFqaAlqvsGyqpllAYniALaHy~~~qy-----  194 (459)
T KOG4340|consen  131 SRSLVEQLPSENEADGQINLGCLLYK----EGQYEAAV-------QKFQAALQVSGYQPLLAYNLALAHYSSRQY-----  194 (459)
T ss_pred             hHHHHHhccCCCccchhccchheeec----cccHHHHH-------HHHHHHHhhcCCCchhHHHHHHHHHhhhhH-----
Confidence            112223345  577888999999999    99999999       788899999988999999999999999999     


Q ss_pred             hhhhHHHHHHHHHHHHHh
Q 010976          271 KQTIVRTAISKFRAAIQL  288 (496)
Q Consensus       271 ~~~~~~~Ai~~~~~Al~l  288 (496)
                           ..|+++....++.
T Consensus       195 -----asALk~iSEIieR  207 (459)
T KOG4340|consen  195 -----ASALKHISEIIER  207 (459)
T ss_pred             -----HHHHHHHHHHHHh
Confidence                 8888877666654

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=97.73  E-value=5.1e-05  Score=61.82  Aligned_cols=79  Identities=16%  Similarity=0.188  Sum_probs=65.6

Q ss_pred             hhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCceeee
Q 010976          382 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLV  461 (496)
Q Consensus       382 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (496)
                      ..|.++||+|+...|.....+.                 ....-.|||.+|.+|+.+.+-+......|.|.|.+...|+.
T Consensus        19 ~n~KkRwF~Lt~~~L~Y~k~~~-----------------~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~r~~yi~   81 (98)
T cd01244          19 LHFKKRYFQLTTTHLSWAKDVQ-----------------CKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCEDDTMQLQ   81 (98)
T ss_pred             cCCceeEEEECCCEEEEECCCC-----------------CceeeeEEccceEEEEEcCCcccCCCceEEEEeCCCeEEEE
Confidence            5899999999987777643211                 24567899999999998888776677899999888878999


Q ss_pred             ecChhhhhhHHHHHHH
Q 010976          462 ADSWEALDGWLDAIRL  477 (496)
Q Consensus       462 ~~~~~~~~~~~~a~~~  477 (496)
                      |+|..+.+.|.+||+=
T Consensus        82 a~s~~E~~~Wi~al~k   97 (98)
T cd01244          82 FEAPVEATDWLNALEK   97 (98)
T ss_pred             CCCHHHHHHHHHHHhc
Confidence            9999999999999973

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.70  E-value=0.0042  Score=57.75  Aligned_cols=187  Identities=14%  Similarity=0.127  Sum_probs=119.7

Q ss_pred             hhhhhcHHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCC-----CC-HHHHHHHHHHHHHhcCCCCCCCCCcc
Q 010976          108 HQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNP-----ED-YDALYNWALVLQESADNVSLDSTSPS  181 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P-----~~-~~a~~~lg~~~~~~~~~~~~~~~~~~  181 (496)
                      +...+.+++|.+++.++-...    ....+++.|-..|.++-...-     ++ ...|..-+.+|. ..+          
T Consensus        24 fgg~~k~eeAadl~~~Aan~y----klaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~----------   88 (288)
T KOG1586|consen   24 FGGSNKYEEAAELYERAANMY----KLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVD----------   88 (288)
T ss_pred             cCCCcchHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccC----------
Confidence            445678999999998776444    335778888888888866531     12 344445555554 447          


Q ss_pred             hhhhHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010976          182 KDALLEEACKKYDEATRLCPTLH------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW  255 (496)
Q Consensus       182 ~~~~~~~A~~~~~~Al~l~P~~~------~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~l  255 (496)
                          .++|+.++++++++..+..      .-+..+|.+|..   .+.++++|+.+|++|-++|..- +.+..--.++...
T Consensus        89 ----~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs---dl~d~ekaI~~YE~Aae~yk~e-es~ssANKC~lKv  160 (288)
T KOG1586|consen   89 ----PEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES---DLQDFEKAIAHYEQAAEYYKGE-ESVSSANKCLLKV  160 (288)
T ss_pred             ----hHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh---hHHHHHHHHHHHHHHHHHHcch-hhhhhHHHHHHHH
Confidence                9999999999999865532      234467777754   1477888887777777777531 1111122344555


Q ss_pred             HHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHH-------HHHHHHHHcchhHHhccCCCCCCCCCcHHHH
Q 010976          256 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY-------NLGTVLYGLAEDTLRTGGTVNPREVSPNELY  328 (496)
Q Consensus       256 g~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~-------~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~  328 (496)
                      +..-..+++|          .+||..|++.....-++.-.-+       .-|.|++-..+                   -
T Consensus       161 A~yaa~leqY----------~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D-------------------~  211 (288)
T KOG1586|consen  161 AQYAAQLEQY----------SKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKAD-------------------E  211 (288)
T ss_pred             HHHHHHHHHH----------HHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhccc-------------------H
Confidence            5556667777          9999999999988766654333       33444444343                   2


Q ss_pred             HHHHHHHHHHHhcCCcHH
Q 010976          329 SQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       329 ~~A~~~~~~a~~l~p~~~  346 (496)
                      -.+...+++-..++|.+.
T Consensus       212 v~a~~ALeky~~~dP~F~  229 (288)
T KOG1586|consen  212 VNAQRALEKYQELDPAFT  229 (288)
T ss_pred             HHHHHHHHHHHhcCCccc
Confidence            344455667777888776

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.69  E-value=0.003  Score=59.85  Aligned_cols=158  Identities=13%  Similarity=0.067  Sum_probs=122.6

Q ss_pred             CCCChhhhhhcHHHHHHHHHHhhccc-----hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 010976          103 QGNTPHQLAEQNNAAMELINSVTGVD-----EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS  177 (496)
Q Consensus       103 ~~~~~~~~~~~~~~A~~~~~~~l~~~-----~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~  177 (496)
                      .....+...+++++|+........+.     .....+..+++-|....++...++-  -..+..||..+....-      
T Consensus       113 ~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide--d~tLtQLA~awv~la~------  184 (299)
T KOG3081|consen  113 LAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDE--DATLTQLAQAWVKLAT------  184 (299)
T ss_pred             HhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch--HHHHHHHHHHHHHHhc------
Confidence            34445567889999999988754444     3455677889999999999988764  3456667666655432      


Q ss_pred             CCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976          178 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL  257 (496)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  257 (496)
                          .-+.+..|.-.|+..-+..|-.+..++..+.|+..    +|++++|.       ..++.+|..++++++++.|+-.
T Consensus       185 ----ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~----~~~~eeAe-------~lL~eaL~kd~~dpetL~Nliv  249 (299)
T KOG3081|consen  185 ----GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ----LGRYEEAE-------SLLEEALDKDAKDPETLANLIV  249 (299)
T ss_pred             ----cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHH----hcCHHHHH-------HHHHHHHhccCCCHHHHHHHHH
Confidence                11238899999999999888899999999999999    99999999       8999999999999999999999


Q ss_pred             HHHHccCcchHHHhhhhHHHHHHHHH-HHHHhcCCCH
Q 010976          258 ALQELSAIVPAREKQTIVRTAISKFR-AAIQLQFDFH  293 (496)
Q Consensus       258 ~l~~~g~~~~A~~~~~~~~~Ai~~~~-~Al~l~P~~~  293 (496)
                      +-...|.-          .++..-+- +....+|.++
T Consensus       250 ~a~~~Gkd----------~~~~~r~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  250 LALHLGKD----------AEVTERNLSQLKLSHPEHP  276 (299)
T ss_pred             HHHHhCCC----------hHHHHHHHHHHHhcCCcch
Confidence            99999998          66665443 4444466654

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.68  E-value=0.00038  Score=70.67  Aligned_cols=147  Identities=15%  Similarity=0.019  Sum_probs=116.2

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHH-HHhCCC--------C
Q 010976          133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEA-TRLCPT--------L  203 (496)
Q Consensus       133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A-l~l~P~--------~  203 (496)
                      ....++..+..-.+.+..+..+.++++......++..|+              +.+|.+.+... +.-.|.        .
T Consensus       217 lq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn--------------~~kA~KlL~~sni~~~~g~~~T~q~~~  282 (696)
T KOG2471|consen  217 LQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGN--------------HPKAMKLLLVSNIHKEAGGTITPQLSS  282 (696)
T ss_pred             HHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcc--------------hHHHHHHHHhcccccccCccccchhhh
Confidence            344566666666667777778889999999999999999              99999877543 222333        2


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC--C---------CCHHHHHHHHHHHHHccCcchHHHhh
Q 010976          204 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN--W---------NSPQALNNWGLALQELSAIVPAREKQ  272 (496)
Q Consensus       204 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~--P---------~~~~a~~~lg~~l~~~g~~~~A~~~~  272 (496)
                      -..|+|+|.+++.    +|.|.-+...|.+|+..+..-+...  |         ...+.+||.|..|...|+.       
T Consensus       283 cif~NNlGcIh~~----~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grP-------  351 (696)
T KOG2471|consen  283 CIFNNNLGCIHYQ----LGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRP-------  351 (696)
T ss_pred             heeecCcceEeee----hhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCc-------
Confidence            3457999999999    9999999988888886444444332  2         3567899999999999999       


Q ss_pred             hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976          273 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  307 (496)
Q Consensus       273 ~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g  307 (496)
                         -.|.++|.+++..--.+|..|..|+.|+....
T Consensus       352 ---l~AfqCf~~av~vfh~nPrlWLRlAEcCima~  383 (696)
T KOG2471|consen  352 ---LLAFQCFQKAVHVFHRNPRLWLRLAECCIMAL  383 (696)
T ss_pred             ---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence               99999999999999999999999999876543

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=97.67  E-value=8.7e-05  Score=61.09  Aligned_cols=96  Identities=23%  Similarity=0.375  Sum_probs=66.7

Q ss_pred             hccccCCCCCCCC----CChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCC
Q 010976          366 AGYLTAPPAGIPV----APHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL  441 (496)
Q Consensus       366 ~g~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (496)
                      .|+|...|+....    -....|+|+||+|...++..+-...+.           .   ..+.-.|+|....+|..+.+.
T Consensus         2 ~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~-----------~---~~p~G~IdL~~~~~V~~~~~~   67 (104)
T cd01236           2 CGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMP-----------T---TLPQGTIDMNQCTDVVDAEAR   67 (104)
T ss_pred             cceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCC-----------C---cccceEEEccceEEEeecccc
Confidence            4777777666542    456789999999975555443211110           0   122456888888888866654


Q ss_pred             CCCCCCeeeEeecCCceeeeecChhhhhhHHHHHH
Q 010976          442 TLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIR  476 (496)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  476 (496)
                      +- .+++|.|.|..--.||.|+|.++.++|..+|.
T Consensus        68 ~~-~~~~f~I~tp~R~f~l~Aete~E~~~Wi~~l~  101 (104)
T cd01236          68 TG-QKFSICILTPDKEHFIKAETKEEISWWLNMLM  101 (104)
T ss_pred             cC-CccEEEEECCCceEEEEeCCHHHHHHHHHHHH
Confidence            33 46889998876666999999999999999985

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.67  E-value=8e-05  Score=47.87  Aligned_cols=34  Identities=32%  Similarity=0.362  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC
Q 010976          156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL  203 (496)
Q Consensus       156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~  203 (496)
                      +.+|+++|.+|..+|+              +++|+.+|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~--------------~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGD--------------YEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCC--------------chHHHHHHHHHHHHCcCC
Confidence            4689999999999999              999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=0.00081  Score=63.40  Aligned_cols=157  Identities=16%  Similarity=0.119  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010976          157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT  235 (496)
Q Consensus       157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~  235 (496)
                      ...+.+..++.-++.              |.-.+..+.+.++.+ |..+.....||.+-.+    .|+.+.|...|+...
T Consensus       178 ~Vmy~~~~~llG~kE--------------y~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ----~GD~k~a~~yf~~ve  239 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKE--------------YVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ----IGDIKTAEKYFQDVE  239 (366)
T ss_pred             HHHHHHHHHHhcchh--------------hhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh----cccHHHHHHHHHHHH
Confidence            356677778888888              999999999999998 6688889999999999    999999995554333


Q ss_pred             HHHHHHHhcC--CCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhc
Q 010976          236 KNYEKAVQLN--WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRT  313 (496)
Q Consensus       236 ~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~  313 (496)
                      +   .+-.++  ..+...+.|.+.++.-.+++          ..|...|.+.+..||.++.+.+|.+.|+..+|+     
T Consensus       240 k---~~~kL~~~q~~~~V~~n~a~i~lg~nn~----------a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~-----  301 (366)
T KOG2796|consen  240 K---VTQKLDGLQGKIMVLMNSAFLHLGQNNF----------AEAHRFFTEILRMDPRNAVANNNKALCLLYLGK-----  301 (366)
T ss_pred             H---HHhhhhccchhHHHHhhhhhheecccch----------HHHHHHHhhccccCCCchhhhchHHHHHHHHHH-----
Confidence            2   222333  23456677888888888888          999999999999999999999999999999998     


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhhhcCCchhh
Q 010976          314 GGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPY  363 (496)
Q Consensus       314 ~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~~~~~~p~~~  363 (496)
                                    ...|+..++++....|....-...+-.+..+....|
T Consensus       302 --------------l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~Y  337 (366)
T KOG2796|consen  302 --------------LKDALKQLEAMVQQDPRHYLHESVLFNLTTMYELEY  337 (366)
T ss_pred             --------------HHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHHh
Confidence                          778889999999999987644444444444443333

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.64  E-value=0.0018  Score=63.62  Aligned_cols=153  Identities=10%  Similarity=0.061  Sum_probs=107.6

Q ss_pred             hhhHhhccHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH
Q 010976          130 EGRSRQRILTFAAKRYANAIERNPEDY-----DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH  204 (496)
Q Consensus       130 ~~~~~~g~~~~Ai~~~~~al~~~P~~~-----~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~  204 (496)
                      .++.+..++.+++.+....+.+-...+     .++..+|..+..++.              |+++++.|++|+++.-++.
T Consensus        91 r~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~--------------fq~~Lesfe~A~~~A~~~~  156 (518)
T KOG1941|consen   91 RSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSV--------------FQKALESFEKALRYAHNND  156 (518)
T ss_pred             HHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHH--------------HHHHHHHHHHHHHHhhccC
Confidence            344455677777777777666543222     456667888888888              9999999999999844332


Q ss_pred             ------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHccCcchHHHhhhh
Q 010976          205 ------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WN---SPQALNNWGLALQELSAIVPAREKQTI  274 (496)
Q Consensus       205 ------~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~-P~---~~~a~~~lg~~l~~~g~~~~A~~~~~~  274 (496)
                            .++..||..+..    +.++++|+-...+|.+.-+. +.++ .+   ...+++.++.+|..+|+.         
T Consensus       157 D~~LElqvcv~Lgslf~~----l~D~~Kal~f~~kA~~lv~s-~~l~d~~~kyr~~~lyhmaValR~~G~L---------  222 (518)
T KOG1941|consen  157 DAMLELQVCVSLGSLFAQ----LKDYEKALFFPCKAAELVNS-YGLKDWSLKYRAMSLYHMAVALRLLGRL---------  222 (518)
T ss_pred             CceeeeehhhhHHHHHHH----HHhhhHHhhhhHhHHHHHHh-cCcCchhHHHHHHHHHHHHHHHHHhccc---------
Confidence                  467888999988    88888888444444333221 1111 11   245678889999999998         


Q ss_pred             HHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcchhHH
Q 010976          275 VRTAISKFRAAIQLQ------FDFHRAIYNLGTVLYGLAEDTL  311 (496)
Q Consensus       275 ~~~Ai~~~~~Al~l~------P~~~~a~~~lg~~~~~~g~~~~  311 (496)
                       -.|.++.++|.++.      +-+.....-+|.+|...|+...
T Consensus       223 -gdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~  264 (518)
T KOG1941|consen  223 -GDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLER  264 (518)
T ss_pred             -ccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhH
Confidence             89999999988762      4456777888999999997543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.64  E-value=8e-05  Score=47.89  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976          249 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  292 (496)
Q Consensus       249 ~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~  292 (496)
                      +.+|+++|.++..+|++          ++|+.+|++|++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDY----------EEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCc----------hHHHHHHHHHHHHCcCC
Confidence            46899999999999999          99999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.59  E-value=0.00016  Score=46.26  Aligned_cols=34  Identities=24%  Similarity=0.310  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC
Q 010976          156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL  203 (496)
Q Consensus       156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~  203 (496)
                      +.+|+.+|.+++.+|+              +++|+++|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~--------------~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGN--------------YEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHCcCC
Confidence            4689999999999999              999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.56  E-value=0.011  Score=60.16  Aligned_cols=183  Identities=13%  Similarity=0.058  Sum_probs=128.2

Q ss_pred             hhcHHHHHHHHHHhhccch-----------------hhh---HhhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q 010976          111 AEQNNAAMELINSVTGVDE-----------------EGR---SRQRILTFAAKRYANAIERNPED----YDALYNWALVL  166 (496)
Q Consensus       111 ~~~~~~A~~~~~~~l~~~~-----------------~~~---~~~g~~~~Ai~~~~~al~~~P~~----~~a~~~lg~~~  166 (496)
                      .|+.+.-.+.|.+++....                 .++   ....+.+.+.+.|+.+|.+=|..    +..|...|...
T Consensus       335 ~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~fe  414 (677)
T KOG1915|consen  335 VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFE  414 (677)
T ss_pred             cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence            3555666667777776541                 111   12478899999999999998864    67788888888


Q ss_pred             HHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 010976          167 QESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW  246 (496)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P  246 (496)
                      ..+.+              +..|.+.+-.||..+|.+-- +-..-.+-..    +++++...       ..|++-|+..|
T Consensus       415 IRq~~--------------l~~ARkiLG~AIG~cPK~Kl-Fk~YIelElq----L~efDRcR-------kLYEkfle~~P  468 (677)
T KOG1915|consen  415 IRQLN--------------LTGARKILGNAIGKCPKDKL-FKGYIELELQ----LREFDRCR-------KLYEKFLEFSP  468 (677)
T ss_pred             HHHcc--------------cHHHHHHHHHHhccCCchhH-HHHHHHHHHH----HhhHHHHH-------HHHHHHHhcCh
Confidence            88888              99999999999999998642 2222222233    45555555       89999999999


Q ss_pred             CCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HcchhHHhccCCCCCCCCCc
Q 010976          247 NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY--GLAEDTLRTGGTVNPREVSP  324 (496)
Q Consensus       247 ~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~--~~g~~~~a~~~~~~~~~~~~  324 (496)
                      .+..+|...|.+-..+|+.          +.|...|+-|+....-+..-+.-.+.+=+  ..|+                
T Consensus       469 e~c~~W~kyaElE~~Lgdt----------dRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E----------------  522 (677)
T KOG1915|consen  469 ENCYAWSKYAELETSLGDT----------DRARAIFELAISQPALDMPELLWKAYIDFEIEEGE----------------  522 (677)
T ss_pred             HhhHHHHHHHHHHHHhhhH----------HHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch----------------
Confidence            9999999999999999999          88888888888765433332222222222  2233                


Q ss_pred             HHHHHHHHHHHHHHHhcCCcHHHH
Q 010976          325 NELYSQSAIYIAAAHALKPSYSVY  348 (496)
Q Consensus       325 ~~~~~~A~~~~~~a~~l~p~~~~y  348 (496)
                         +..+...|++.+...+...++
T Consensus       523 ---~ekaR~LYerlL~rt~h~kvW  543 (677)
T KOG1915|consen  523 ---FEKARALYERLLDRTQHVKVW  543 (677)
T ss_pred             ---HHHHHHHHHHHHHhcccchHH
Confidence               666777777777776666643

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.55  E-value=0.00017  Score=46.15  Aligned_cols=34  Identities=26%  Similarity=0.295  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976          249 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  292 (496)
Q Consensus       249 ~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~  292 (496)
                      +.+++.+|.+++.+|++          ++|+.+|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~----------~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNY----------EEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHCcCC
Confidence            46899999999999999          99999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.55  E-value=0.0083  Score=56.90  Aligned_cols=111  Identities=22%  Similarity=0.176  Sum_probs=91.5

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010976          155 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELW  231 (496)
Q Consensus       155 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~  231 (496)
                      .+.-||+-|....+.|+              +++|+..|++....+|..   ..+...++.++++    .+++++|+   
T Consensus        33 p~~~LY~~g~~~L~~gn--------------~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk----~~~y~~A~---   91 (254)
T COG4105          33 PASELYNEGLTELQKGN--------------YEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK----NGEYDLAL---   91 (254)
T ss_pred             CHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh----cccHHHHH---
Confidence            46778999999999999              999999999999998875   4788999999999    99999999   


Q ss_pred             HHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976          232 KQATKNYEKAVQLNWNSP---QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  292 (496)
Q Consensus       232 ~~A~~~~~~Al~l~P~~~---~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~  292 (496)
                          ...++-+.+.|+++   .+++..|.+++..=  +.....+....+|+..|+..|..-|+.
T Consensus        92 ----~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i--~~~~rDq~~~~~A~~~f~~~i~ryPnS  149 (254)
T COG4105          92 ----AYIDRFIRLYPTHPNADYAYYLKGLSYFFQI--DDVTRDQSAARAAFAAFKELVQRYPNS  149 (254)
T ss_pred             ----HHHHHHHHhCCCCCChhHHHHHHHHHHhccC--CccccCHHHHHHHHHHHHHHHHHCCCC
Confidence                88999999998765   46777787755432  223445666689999999999999986

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.54  E-value=0.0021  Score=56.42  Aligned_cols=75  Identities=25%  Similarity=0.306  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010976          156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT  235 (496)
Q Consensus       156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~  235 (496)
                      ..+...++..+...|+              +++|+..+++++.++|.+..+|..+-.+|..    .|+..+|++.|++..
T Consensus        62 ~~~~~~l~~~~~~~~~--------------~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~----~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   62 LDALERLAEALLEAGD--------------YEEALRLLQRALALDPYDEEAYRLLMRALAA----QGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH----TT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC--------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----CcCHHHHHHHHHHHH
Confidence            4567778888899999              9999999999999999999999999999999    999999999999999


Q ss_pred             HHHHHHHhcCCCC
Q 010976          236 KNYEKAVQLNWNS  248 (496)
Q Consensus       236 ~~~~~Al~l~P~~  248 (496)
                      ..+.+-+...|..
T Consensus       124 ~~l~~elg~~Ps~  136 (146)
T PF03704_consen  124 RRLREELGIEPSP  136 (146)
T ss_dssp             HHHHHHHS----H
T ss_pred             HHHHHHhCcCcCH
Confidence            9999888888863

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.50  E-value=0.014  Score=59.04  Aligned_cols=192  Identities=13%  Similarity=-0.016  Sum_probs=123.4

Q ss_pred             hHhhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---hcCCCCCCCCCcchhhhHHHHHHHHHHHH-HhCCCC
Q 010976          132 RSRQRILTFAAKRYANAIER----NPEDYDALYNWALVLQE---SADNVSLDSTSPSKDALLEEACKKYDEAT-RLCPTL  203 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~----~P~~~~a~~~lg~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~Al-~l~P~~  203 (496)
                      |....+|+.-+.+.+..-.+    -++.+.+.+.+|.++.+   .|+              .++|+..+..++ ...+.+
T Consensus       151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gd--------------re~Al~il~~~l~~~~~~~  216 (374)
T PF13281_consen  151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGD--------------REKALQILLPVLESDENPD  216 (374)
T ss_pred             hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCC--------------HHHHHHHHHHHHhccCCCC
Confidence            33346777777777776555    45667788888999988   666              999999999954 456779


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHH--HHHH
Q 010976          204 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRT--AISK  281 (496)
Q Consensus       204 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~--Ai~~  281 (496)
                      ++.+..+|.+|.+++...+..+  .+.+++|+..|.++.+++| +...-.|++.++...|...+.......+.-  +.-.
T Consensus       217 ~d~~gL~GRIyKD~~~~s~~~d--~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~ll  293 (374)
T PF13281_consen  217 PDTLGLLGRIYKDLFLESNFTD--RESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLL  293 (374)
T ss_pred             hHHHHHHHHHHHHHHHHcCccc--hHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHH
Confidence            9999999999998655433322  2338899999999999996 445556778888888875211111110000  0000


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHH---HHHHHHhhhcC
Q 010976          282 FRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV---YSSALRLVRSM  358 (496)
Q Consensus       282 ~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~---y~~al~~~~~~  358 (496)
                      -++-..-.-.+...+-.+..+..-.|+                   +..+..+++++.++.|....   ....+.+++++
T Consensus       294 g~kg~~~~~~dYWd~ATl~Ea~vL~~d-------------------~~ka~~a~e~~~~l~~~~W~l~St~~ni~Li~~~  354 (374)
T PF13281_consen  294 GRKGSLEKMQDYWDVATLLEASVLAGD-------------------YEKAIQAAEKAFKLKPPAWELESTLENIKLIRHF  354 (374)
T ss_pred             HhhccccccccHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHH
Confidence            001000112334444555566666666                   78899999999999888763   33444455444


Q ss_pred             C
Q 010976          359 L  359 (496)
Q Consensus       359 ~  359 (496)
                      .
T Consensus       355 ~  355 (374)
T PF13281_consen  355 R  355 (374)
T ss_pred             h
Confidence            4

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.42  E-value=0.0037  Score=67.23  Aligned_cols=148  Identities=16%  Similarity=0.165  Sum_probs=99.7

Q ss_pred             hhcHHHHHHHHHHhhccc--hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHH
Q 010976          111 AEQNNAAMELINSVTGVD--EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEE  188 (496)
Q Consensus       111 ~~~~~~A~~~~~~~l~~~--~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~  188 (496)
                      .|..++|..+|.+....+  +.-+-.+|.+++|.+..+.-=++  ..-..||+.+.-+...++              .+.
T Consensus       813 LgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~D--------------i~~  876 (1416)
T KOG3617|consen  813 LGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRD--------------IEA  876 (1416)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhcc--------------HHH
Confidence            455555555555444333  22222334555554443322111  123568899999999998              999


Q ss_pred             HHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-------
Q 010976          189 ACKKYDEA----------TRLCPT----------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA-------  241 (496)
Q Consensus       189 A~~~~~~A----------l~l~P~----------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~A-------  241 (496)
                      |+++|+++          |.-+|.          +...|..||..+..    .|+.+.|+..|..|..+|...       
T Consensus       877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES----~GemdaAl~~Y~~A~D~fs~VrI~C~qG  952 (1416)
T KOG3617|consen  877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLES----VGEMDAALSFYSSAKDYFSMVRIKCIQG  952 (1416)
T ss_pred             HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhc----ccchHHHHHHHHHhhhhhhheeeEeecc
Confidence            99999875          222443          45678889999999    999999999999988877542       


Q ss_pred             -------HhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh
Q 010976          242 -------VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  288 (496)
Q Consensus       242 -------l~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l  288 (496)
                             |.....+-.+.+.||..|...|+.          .+|+..|.+|-.+
T Consensus       953 k~~kAa~iA~esgd~AAcYhlaR~YEn~g~v----------~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  953 KTDKAARIAEESGDKAACYHLARMYENDGDV----------VKAVKFFTRAQAF  996 (1416)
T ss_pred             CchHHHHHHHhcccHHHHHHHHHHhhhhHHH----------HHHHHHHHHHHHH
Confidence                   233456777888888888888888          9999988886543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.37  E-value=0.005  Score=66.99  Aligned_cols=106  Identities=20%  Similarity=0.079  Sum_probs=97.0

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976          134 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA  213 (496)
Q Consensus       134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  213 (496)
                      ..+++.+|+....+.++..|+..-+....|.++.++|+              .++|..+++..-...+++-..+-.+-.+
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk--------------~~ea~~~Le~~~~~~~~D~~tLq~l~~~   86 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGK--------------GDEALKLLEALYGLKGTDDLTLQFLQNV   86 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcC--------------chhHHHHHhhhccCCCCchHHHHHHHHH
Confidence            35788999999999999999999999999999999999              9999988888888888888999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          214 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       214 ~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      |.+    ++++++|.       .+|+++++.+|+ .+.+..+=.+|.+-+.|
T Consensus        87 y~d----~~~~d~~~-------~~Ye~~~~~~P~-eell~~lFmayvR~~~y  126 (932)
T KOG2053|consen   87 YRD----LGKLDEAV-------HLYERANQKYPS-EELLYHLFMAYVREKSY  126 (932)
T ss_pred             HHH----HhhhhHHH-------HHHHHHHhhCCc-HHHHHHHHHHHHHHHHH
Confidence            999    99999999       899999999999 88888888888888887

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=0.0091  Score=56.48  Aligned_cols=183  Identities=12%  Similarity=0.084  Sum_probs=146.5

Q ss_pred             hhhcHHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHH
Q 010976          110 LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEA  189 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A  189 (496)
                      ...++...++++..++..+       ..-..|+.+-..+|.++|.+..+|.-+-.++..++.             ++.+-
T Consensus        38 Yte~fr~~m~YfRAI~~~~-------E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~-------------dL~~E   97 (318)
T KOG0530|consen   38 YTEDFRDVMDYFRAIIAKN-------EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMS-------------DLNKE   97 (318)
T ss_pred             echhHHHHHHHHHHHHhcc-------ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHH-------------HHHHH
Confidence            4567788888888777666       444679999999999999999999999999888775             38888


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchH
Q 010976          190 CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK-EAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA  268 (496)
Q Consensus       190 ~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~-eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A  268 (496)
                      ++++.+.++-+|.|..+|..+-.+...    .|+.. .-+       +..+..+..+.+|.-+|...-.++...+.+   
T Consensus        98 l~~l~eI~e~npKNYQvWHHRr~ive~----l~d~s~rEL-------ef~~~~l~~DaKNYHaWshRqW~~r~F~~~---  163 (318)
T KOG0530|consen   98 LEYLDEIIEDNPKNYQVWHHRRVIVEL----LGDPSFREL-------EFTKLMLDDDAKNYHAWSHRQWVLRFFKDY---  163 (318)
T ss_pred             HHHHHHHHHhCccchhHHHHHHHHHHH----hcCcccchH-------HHHHHHHhccccchhhhHHHHHHHHHHhhH---
Confidence            999999999999999999998888887    88877 566       788999999999999999999999999999   


Q ss_pred             HHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          269 REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       269 ~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                             +.-+.+..+.|+.+-.|-.+|+..-.+.....             ...+....+.-..|....+.+.|++.
T Consensus       164 -------~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~-------------~~~~~~~le~El~yt~~~I~~vP~Ne  221 (318)
T KOG0530|consen  164 -------EDELAYADELLEEDIRNNSAWNQRYFVITNTK-------------GVISKAELERELNYTKDKILLVPNNE  221 (318)
T ss_pred             -------HHHHHHHHHHHHHhhhccchhheeeEEEEecc-------------CCccHHHHHHHHHHHHHHHHhCCCCc
Confidence                   89999999999988777777665443332211             12222335566677778888888887

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.33  E-value=0.0071  Score=50.23  Aligned_cols=91  Identities=21%  Similarity=0.219  Sum_probs=73.1

Q ss_pred             hhHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH-
Q 010976          184 ALLEEACKKYDEATRLCPT------------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ-  250 (496)
Q Consensus       184 ~~~~~A~~~~~~Al~l~P~------------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~-  250 (496)
                      +.|++|...|++|+...-+            ++-++-.|+.++..    +|+|++++..-+.|+.+|.+-=+++.+... 
T Consensus        23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~----Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl   98 (144)
T PF12968_consen   23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG----LGRYDECLQSADRALRYFNRRGELHQDEGKL   98 (144)
T ss_dssp             T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHH--TTSTHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHHhhccccccccchh
Confidence            4499999999999998432            23467788889999    999999999999999999999999987655 


Q ss_pred             ---HHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh
Q 010976          251 ---ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  288 (496)
Q Consensus       251 ---a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l  288 (496)
                         +-++.+.++..+|+.          ++|+..|+.+-+.
T Consensus        99 WIaaVfsra~Al~~~Gr~----------~eA~~~fr~agEM  129 (144)
T PF12968_consen   99 WIAAVFSRAVALEGLGRK----------EEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHH
Confidence               457889999999999          9999999998664

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.29  E-value=0.0057  Score=60.14  Aligned_cols=125  Identities=13%  Similarity=0.089  Sum_probs=100.2

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-cCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQES-ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA  213 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  213 (496)
                      .+..+.|...|.+|++..+....+|...|.+-+.. ++              .+.|.+.|+++++..|.+...|......
T Consensus        14 ~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d--------------~~~A~~Ife~glk~f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen   14 TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKD--------------PKRARKIFERGLKKFPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS---------------HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCC--------------HHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            34578999999999966666789999999997774 55              7779999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcC
Q 010976          214 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP---QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF  290 (496)
Q Consensus       214 ~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~---~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P  290 (496)
                      +..    .++.+.|.       ..|++++..-|...   ..|..+...-...|+.          +.....++++.++-|
T Consensus        80 l~~----~~d~~~aR-------~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl----------~~v~~v~~R~~~~~~  138 (280)
T PF05843_consen   80 LIK----LNDINNAR-------ALFERAISSLPKEKQSKKIWKKFIEFESKYGDL----------ESVRKVEKRAEELFP  138 (280)
T ss_dssp             HHH----TT-HHHHH-------HHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-H----------HHHHHHHHHHHHHTT
T ss_pred             HHH----hCcHHHHH-------HHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHhh
Confidence            988    99999999       78888887766544   5677777777777777          999999999999988


Q ss_pred             CCHH
Q 010976          291 DFHR  294 (496)
Q Consensus       291 ~~~~  294 (496)
                      +...
T Consensus       139 ~~~~  142 (280)
T PF05843_consen  139 EDNS  142 (280)
T ss_dssp             TS-H
T ss_pred             hhhH
Confidence            8543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.27  E-value=0.019  Score=58.15  Aligned_cols=174  Identities=13%  Similarity=0.014  Sum_probs=114.2

Q ss_pred             hhhhhcHHHHHHHHHHhhccc--------------hhhhHh---hccHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHh
Q 010976          108 HQLAEQNNAAMELINSVTGVD--------------EEGRSR---QRILTFAAKRYAN-AIERNPEDYDALYNWALVLQES  169 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~--------------~~~~~~---~g~~~~Ai~~~~~-al~~~P~~~~a~~~lg~~~~~~  169 (496)
                      ++...+++..+.+++..-...              +.++.+   .|+.++|+..+.. .....+.+++.+..+|.+|..+
T Consensus       151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~  230 (374)
T PF13281_consen  151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL  230 (374)
T ss_pred             hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence            345667777777776555441              233444   7999999999999 5566688999999999999876


Q ss_pred             cCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-----hc
Q 010976          170 ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV-----QL  244 (496)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al-----~l  244 (496)
                      -..     ........+++|+..|.++.+++|+. ..=.|++.++.-    .|...+.....++-...+...+     .-
T Consensus       231 ~~~-----s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~----~g~~~~~~~el~~i~~~l~~llg~kg~~~  300 (374)
T PF13281_consen  231 FLE-----SNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLML----AGHDFETSEELRKIGVKLSSLLGRKGSLE  300 (374)
T ss_pred             HHH-----cCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHH----cCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence            430     11123334999999999999999754 334566666666    6764444422222211111111     11


Q ss_pred             CCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 010976          245 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT  301 (496)
Q Consensus       245 ~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~  301 (496)
                      .-.+...+-.++.+..-.|++          ++|+.++++++++.|........+..
T Consensus       301 ~~~dYWd~ATl~Ea~vL~~d~----------~ka~~a~e~~~~l~~~~W~l~St~~n  347 (374)
T PF13281_consen  301 KMQDYWDVATLLEASVLAGDY----------EKAIQAAEKAFKLKPPAWELESTLEN  347 (374)
T ss_pred             ccccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHhhcCCcchhHHHHHHH
Confidence            223455566677777778888          99999999999998887654444443

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.0048  Score=60.18  Aligned_cols=92  Identities=18%  Similarity=0.161  Sum_probs=78.8

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPED----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH  204 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~----~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~  204 (496)
                      +.-+++..+|..|+..|.+.|+..-.+    +..|.|++.+.+.+|+              |..|+..+.+|+.++|.+.
T Consensus        88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~N--------------yRs~l~Dcs~al~~~P~h~  153 (390)
T KOG0551|consen   88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGN--------------YRSALNDCSAALKLKPTHL  153 (390)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHH--------------HHHHHHHHHHHHhcCcchh
Confidence            334667899999999999999987554    4568899999999999              9999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC
Q 010976          205 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN  245 (496)
Q Consensus       205 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~  245 (496)
                      .+++.=+.|+..    +.++++|.       ..++..++++
T Consensus       154 Ka~~R~Akc~~e----Le~~~~a~-------nw~ee~~~~d  183 (390)
T KOG0551|consen  154 KAYIRGAKCLLE----LERFAEAV-------NWCEEGLQID  183 (390)
T ss_pred             hhhhhhhHHHHH----HHHHHHHH-------HHHhhhhhhh
Confidence            999999999999    88888888       6666655443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.25  E-value=0.029  Score=63.96  Aligned_cols=163  Identities=7%  Similarity=-0.040  Sum_probs=119.9

Q ss_pred             hhhcHHHHHHHHHHhhccch-----------hhhH----hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCC
Q 010976          110 LAEQNNAAMELINSVTGVDE-----------EGRS----RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS  174 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~l~~~~-----------~~~~----~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~  174 (496)
                      +.++.+.|...+++++...+           -++.    .-|.-+.-.+.|++|.+.+ +-...|..|..+|...++   
T Consensus      1470 elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek--- 1545 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEK--- 1545 (1710)
T ss_pred             hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhc---
Confidence            56777777777777776651           0111    1143444556677776665 234567778888888888   


Q ss_pred             CCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHH
Q 010976          175 LDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--SPQAL  252 (496)
Q Consensus       175 ~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~--~~~a~  252 (496)
                                 +++|.++|+..++-.-+....|..+|..+..    +.+-+.|.       ..+.+|++.-|.  +.+..
T Consensus      1546 -----------~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~----~ne~~aa~-------~lL~rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1546 -----------NDEADELLRLMLKKFGQTRKVWIMYADFLLR----QNEAEAAR-------ELLKRALKSLPKQEHVEFI 1603 (1710)
T ss_pred             -----------chhHHHHHHHHHHHhcchhhHHHHHHHHHhc----ccHHHHHH-------HHHHHHHhhcchhhhHHHH
Confidence                       8888888888888877788888888888887    77777777       666677766666  77777


Q ss_pred             HHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          253 NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       253 ~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                      ...+.+-++.|+.          +.+...|+-.+.-.|.-.+.|.-+...-.+.|.
T Consensus      1604 skfAqLEFk~GDa----------eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDA----------ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD 1649 (1710)
T ss_pred             HHHHHHHhhcCCc----------hhhHHHHHHHHhhCccchhHHHHHHHHHHccCC
Confidence            7888888888888          888888888888888888888877776666665

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.24  E-value=0.014  Score=57.60  Aligned_cols=146  Identities=27%  Similarity=0.220  Sum_probs=106.8

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-HDAFYNWAIA  213 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~  213 (496)
                      ..+..+|+..|+.+  .+..++.+.++||.+|..-.-          ...++.+|.+.|++|....-.. ..+.+++|.+
T Consensus        90 ~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~g----------v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~  157 (292)
T COG0790          90 SRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRG----------VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLA  157 (292)
T ss_pred             cccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCC----------cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence            36789999999955  455688999999999987220          1113999999999999874333 3458899998


Q ss_pred             HHHHHHHcCCHHHHH-HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976          214 ISDRAKMRGRTKEAE-ELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  292 (496)
Q Consensus       214 ~~~~~~~~g~~~eA~-~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~  292 (496)
                      |..     |....+. ....+|+..|.++-...  ++.+.+++|.+|..-.-      -..++.+|+.+|.+|.+...  
T Consensus       158 ~~~-----g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~G------v~~d~~~A~~wy~~Aa~~g~--  222 (292)
T COG0790         158 YLS-----GLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLG------VPRDLKKAFRWYKKAAEQGD--  222 (292)
T ss_pred             HHc-----ChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCC------CCcCHHHHHHHHHHHHHCCC--
Confidence            875     3222122 22346778888887775  89999999988865411      12355999999999999877  


Q ss_pred             HHHHHHHHHHHHHcch
Q 010976          293 HRAIYNLGTVLYGLAE  308 (496)
Q Consensus       293 ~~a~~~lg~~~~~~g~  308 (496)
                      ..++++++ +++..|.
T Consensus       223 ~~a~~~~~-~~~~~g~  237 (292)
T COG0790         223 GAACYNLG-LMYLNGE  237 (292)
T ss_pred             HHHHHHHH-HHHhcCC
Confidence            89999999 7777773

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.23  E-value=0.0074  Score=65.72  Aligned_cols=102  Identities=18%  Similarity=0.099  Sum_probs=92.7

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 010976          185 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA  264 (496)
Q Consensus       185 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~  264 (496)
                      +|.+|.+...+.++..|+...+...-|..+.+    +|+.++|.       .+++..-...+++...+--+-.+|..+|+
T Consensus        24 qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r----~gk~~ea~-------~~Le~~~~~~~~D~~tLq~l~~~y~d~~~   92 (932)
T KOG2053|consen   24 QFKKALAKLGKLLKKHPNALYAKVLKALSLFR----LGKGDEAL-------KLLEALYGLKGTDDLTLQFLQNVYRDLGK   92 (932)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----hcCchhHH-------HHHhhhccCCCCchHHHHHHHHHHHHHhh
Confidence            39999999999999999999999999999999    99999999       67776667778899999999999999999


Q ss_pred             cchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          265 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       265 ~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                      +          ++|..+|++++..+|+ -...+.+=.+|.+.+.
T Consensus        93 ~----------d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~  125 (932)
T KOG2053|consen   93 L----------DEAVHLYERANQKYPS-EELLYHLFMAYVREKS  125 (932)
T ss_pred             h----------hHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHH
Confidence            9          9999999999999999 7888888888887776

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.21  E-value=0.03  Score=57.21  Aligned_cols=179  Identities=14%  Similarity=0.178  Sum_probs=102.4

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  214 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~  214 (496)
                      ++++..|...|++||..+-.+...|...+.+-++...              ...|...+++|+.+-|.--..||..-.+-
T Consensus        86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~--------------vNhARNv~dRAvt~lPRVdqlWyKY~ymE  151 (677)
T KOG1915|consen   86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQ--------------VNHARNVWDRAVTILPRVDQLWYKYIYME  151 (677)
T ss_pred             HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhh--------------HhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            5666677777777777777777777777666666666              66677777777777776666666655555


Q ss_pred             HHHHHHcCCHHHHHHHH--------------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchH
Q 010976          215 SDRAKMRGRTKEAEELW--------------------------KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA  268 (496)
Q Consensus       215 ~~~~~~~g~~~eA~~~~--------------------------~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A  268 (496)
                      -.    +|+..-|.+.|                          +.|...|++-+-..| ....|...+..-.+.|+.   
T Consensus       152 E~----LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP-~v~~wikyarFE~k~g~~---  223 (677)
T KOG1915|consen  152 EM----LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHP-KVSNWIKYARFEEKHGNV---  223 (677)
T ss_pred             HH----hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecc-cHHHHHHHHHHHHhcCcH---
Confidence            44    66666666322                          113355555555554 344455555555555555   


Q ss_pred             HHhhhhHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH-
Q 010976          269 REKQTIVRTAISKFRAAIQLQFDFH-RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS-  346 (496)
Q Consensus       269 ~~~~~~~~~Ai~~~~~Al~l~P~~~-~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~-  346 (496)
                             .-|...|.+|+..-.++. ....-.+.+.+..++..                 |..|...|.-|+..-|... 
T Consensus       224 -------~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE-----------------~ERar~iykyAld~~pk~ra  279 (677)
T KOG1915|consen  224 -------ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKE-----------------YERARFIYKYALDHIPKGRA  279 (677)
T ss_pred             -------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhcCcccH
Confidence                   777777777776544332 22233334444333211                 5666666777777666553 


Q ss_pred             --HHHHHHHhhhcCC
Q 010976          347 --VYSSALRLVRSML  359 (496)
Q Consensus       347 --~y~~al~~~~~~~  359 (496)
                        .|..-...-+++.
T Consensus       280 eeL~k~~~~fEKqfG  294 (677)
T KOG1915|consen  280 EELYKKYTAFEKQFG  294 (677)
T ss_pred             HHHHHHHHHHHHHhc
Confidence              3444444333333

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.09  E-value=0.015  Score=57.20  Aligned_cols=138  Identities=14%  Similarity=0.091  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 010976          158 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG-RTKEAEELWKQATK  236 (496)
Q Consensus       158 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g-~~~eA~~~~~~A~~  236 (496)
                      +|..+.....+.+.              .+.|...|.+|++..+....+|...|.+-+.    .+ +.+.|.       .
T Consensus         3 v~i~~m~~~~r~~g--------------~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~----~~~d~~~A~-------~   57 (280)
T PF05843_consen    3 VWIQYMRFMRRTEG--------------IEAARKVFKRARKDKRCTYHVYVAYALMEYY----CNKDPKRAR-------K   57 (280)
T ss_dssp             HHHHHHHHHHHHHH--------------HHHHHHHHHHHHCCCCS-THHHHHHHHHHHH----TCS-HHHHH-------H
T ss_pred             HHHHHHHHHHHhCC--------------hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----hCCCHHHHH-------H
Confidence            56667777777777              9999999999997666678899988888555    54 444488       7


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcchhHHhc
Q 010976          237 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH---RAIYNLGTVLYGLAEDTLRT  313 (496)
Q Consensus       237 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~---~a~~~lg~~~~~~g~~~~a~  313 (496)
                      .|+.+++.-|.+...|......+...|+.          +.|...|++++..-|...   .+|......-...|+     
T Consensus        58 Ife~glk~f~~~~~~~~~Y~~~l~~~~d~----------~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd-----  122 (280)
T PF05843_consen   58 IFERGLKKFPSDPDFWLEYLDFLIKLNDI----------NNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD-----  122 (280)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS------
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC-----
Confidence            88888888899999999999999999999          999999999999866654   466666666666675     


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHH
Q 010976          314 GGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS  349 (496)
Q Consensus       314 ~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~  349 (496)
                                    +......+.++.++-|......
T Consensus       123 --------------l~~v~~v~~R~~~~~~~~~~~~  144 (280)
T PF05843_consen  123 --------------LESVRKVEKRAEELFPEDNSLE  144 (280)
T ss_dssp             --------------HHHHHHHHHHHHHHTTTS-HHH
T ss_pred             --------------HHHHHHHHHHHHHHhhhhhHHH
Confidence                          5566666777777777644333

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.08  E-value=0.00021  Score=69.68  Aligned_cols=85  Identities=20%  Similarity=0.258  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      ++.|++.|.++|.++|..+..|..++.++..    +++...|+       ..|..|+++||+...-|-..|.+...+|++
T Consensus       130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk----l~kp~~ai-------rD~d~A~ein~Dsa~~ykfrg~A~rllg~~  198 (377)
T KOG1308|consen  130 FDTAIELFTSAIELNPPLAILYAKRASVFLK----LKKPNAAI-------RDCDFAIEINPDSAKGYKFRGYAERLLGNW  198 (377)
T ss_pred             hhhhhcccccccccCCchhhhcccccceeee----ccCCchhh-------hhhhhhhccCcccccccchhhHHHHHhhch
Confidence            9999999999999999999999999999999    99999999       899999999999999999999999999999


Q ss_pred             chHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976          266 VPAREKQTIVRTAISKFRAAIQLQFD  291 (496)
Q Consensus       266 ~~A~~~~~~~~~Ai~~~~~Al~l~P~  291 (496)
                                .+|-..++.|.+++-+
T Consensus       199 ----------e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  199 ----------EEAAHDLALACKLDYD  214 (377)
T ss_pred             ----------HHHHHHHHHHHhcccc
Confidence                      9999999999998755

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.08  E-value=0.0029  Score=62.22  Aligned_cols=128  Identities=16%  Similarity=0.160  Sum_probs=96.8

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC--
Q 010976          131 GRSRQRILTFAAKRYANAIERNPED------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--  202 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~--  202 (496)
                      +...++.|+++++.|+.|+++.-++      ..++..||.++..+.+              +++|..+..+|.++--+  
T Consensus       131 Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D--------------~~Kal~f~~kA~~lv~s~~  196 (518)
T KOG1941|consen  131 AHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD--------------YEKALFFPCKAAELVNSYG  196 (518)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh--------------hhHHhhhhHhHHHHHHhcC
Confidence            3445688999999999999886443      3467899999999999              99999999999998332  


Q ss_pred             --------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCcchHHHhh
Q 010976          203 --------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL--NWNSPQALNNWGLALQELSAIVPAREKQ  272 (496)
Q Consensus       203 --------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~~A~~~~  272 (496)
                              ...++|.++.++..    +|+.-.|.++.++|.+.   +++.  .+-+.....-+|.+|...|+.       
T Consensus       197 l~d~~~kyr~~~lyhmaValR~----~G~LgdA~e~C~Ea~kl---al~~Gdra~~arc~~~~aDIyR~~gd~-------  262 (518)
T KOG1941|consen  197 LKDWSLKYRAMSLYHMAVALRL----LGRLGDAMECCEEAMKL---ALQHGDRALQARCLLCFADIYRSRGDL-------  262 (518)
T ss_pred             cCchhHHHHHHHHHHHHHHHHH----hcccccHHHHHHHHHHH---HHHhCChHHHHHHHHHHHHHHHhcccH-------
Confidence                    23467888888888    99999999544443332   1111  133566778899999999999       


Q ss_pred             hhHHHHHHHHHHHHHhc
Q 010976          273 TIVRTAISKFRAAIQLQ  289 (496)
Q Consensus       273 ~~~~~Ai~~~~~Al~l~  289 (496)
                         +.|..-|++|....
T Consensus       263 ---e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  263 ---ERAFRRYEQAMGTM  276 (518)
T ss_pred             ---hHHHHHHHHHHHHH
Confidence               88888888887653

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.08  E-value=0.033  Score=56.25  Aligned_cols=170  Identities=15%  Similarity=0.134  Sum_probs=117.9

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHcCCHHHH
Q 010976          152 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LHDAFYNWAIAISDRAKMRGRTKEA  227 (496)
Q Consensus       152 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~----~~~a~~~lg~~~~~~~~~~g~~~eA  227 (496)
                      .......|...+.+..+.|.              ++.|...+.++...++.    .+.+.+..+..+..    .|+..+|
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~--------------~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~----~g~~~~A  203 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGN--------------FQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA----QGEQEEA  203 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCC--------------cHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH----cCCHHHH
Confidence            34556778888899999999              99999999999987632    46677777888888    9999999


Q ss_pred             HHHHHHHHH-HHHHHHhcC-----------------CC--CHHHHHHHHHHHHHccCcchHHHhh------hhHHHHHHH
Q 010976          228 EELWKQATK-NYEKAVQLN-----------------WN--SPQALNNWGLALQELSAIVPAREKQ------TIVRTAISK  281 (496)
Q Consensus       228 ~~~~~~A~~-~~~~Al~l~-----------------P~--~~~a~~~lg~~l~~~g~~~~A~~~~------~~~~~Ai~~  281 (496)
                      +..++..+. .+..-+...                 +.  ...-.-..+.++..+|++   ....      +..++++..
T Consensus       204 i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w---~~~~~~~~~~~~~~~~~~~  280 (352)
T PF02259_consen  204 IQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKW---LDELYSKLSSESSDEILKY  280 (352)
T ss_pred             HHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHH---HHhhccccccccHHHHHHH
Confidence            977766666 333221100                 00  222233445555555555   3333      566999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976          282 FRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  344 (496)
Q Consensus       282 ~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~  344 (496)
                      |+++++++|....+|+.+|..+...-+..........  .....++...++.+|-+++.+.+.
T Consensus       281 ~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  281 YKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESS--QEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccc--hhHHHHHHHHHHHHHHHHHhhCCC
Confidence            9999999999999999999998877653321111000  012344667899999999999888

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.019  Score=55.52  Aligned_cols=137  Identities=15%  Similarity=0.070  Sum_probs=96.8

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHH--HHH
Q 010976          131 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD--AFY  208 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~--a~~  208 (496)
                      .....|++.+|...|..++...|++.++...++.+|...|+              .+.|...+..    .|....  .+.
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~--------------~e~A~~iL~~----lP~~~~~~~~~  204 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGD--------------VEAAQAILAA----LPLQAQDKAAH  204 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCC--------------hHHHHHHHHh----CcccchhhHHH
Confidence            34557999999999999999999999999999999999999              8887766654    343221  111


Q ss_pred             H---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH
Q 010976          209 N---WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA  285 (496)
Q Consensus       209 ~---lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A  285 (496)
                      .   .-..+..    .....+.        ..+++.+..||++.++.+.++..|...|+.          ++|.+.+-..
T Consensus       205 ~l~a~i~ll~q----aa~~~~~--------~~l~~~~aadPdd~~aa~~lA~~~~~~g~~----------e~Ale~Ll~~  262 (304)
T COG3118         205 GLQAQIELLEQ----AAATPEI--------QDLQRRLAADPDDVEAALALADQLHLVGRN----------EAALEHLLAL  262 (304)
T ss_pred             HHHHHHHHHHH----HhcCCCH--------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHH
Confidence            1   1111222    2222332        366778889999999999999999999999          9999888887


Q ss_pred             HHhcCC--CHHHHHHHHHHHHHcc
Q 010976          286 IQLQFD--FHRAIYNLGTVLYGLA  307 (496)
Q Consensus       286 l~l~P~--~~~a~~~lg~~~~~~g  307 (496)
                      ++.+-.  +..+...|-.++.-.|
T Consensus       263 l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         263 LRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHhcccccCcHHHHHHHHHHHhcC
Confidence            776543  3344444444443333

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.04  E-value=0.19  Score=50.43  Aligned_cols=91  Identities=20%  Similarity=0.004  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------------------
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ--------------------------------  233 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~--------------------------------  233 (496)
                      .+.|+.+-+++-...|.-..++...-...+.    .|+++.|+++.++                                
T Consensus       170 reaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~----~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp  245 (531)
T COG3898         170 REAARHYAERAAEKAPQLPWAARATLEARCA----AGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP  245 (531)
T ss_pred             HHHHHHHHHHHHhhccCCchHHHHHHHHHHh----cCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence            6666666666666666665555554445555    6666666655432                                


Q ss_pred             --HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcC
Q 010976          234 --ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF  290 (496)
Q Consensus       234 --A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P  290 (496)
                        |...-.+++++.|+...+-..-+.+|++.|+.          .++-..++.+.+..|
T Consensus       246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~----------rKg~~ilE~aWK~eP  294 (531)
T COG3898         246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNL----------RKGSKILETAWKAEP  294 (531)
T ss_pred             HHHHHHHHHHhhcCCccchHHHHHHHHHHhccch----------hhhhhHHHHHHhcCC
Confidence              55778889999999999999999999999998          555555555555444

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain

Probab=96.99  E-value=0.0014  Score=53.62  Aligned_cols=82  Identities=18%  Similarity=0.246  Sum_probs=54.7

Q ss_pred             hhhhhhhccccchh--hhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCC-C----CCCeeeEee
Q 010976          381 HSDWKRSQFVLNHE--GLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL-P----PGAGLCIET  453 (496)
Q Consensus       381 ~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~  453 (496)
                      ...|.++||+|...  .|........                ......|+|..+.++..+.+... |    +...|.+.|
T Consensus        12 ~k~WkkRwFvL~~~~~~L~Yy~~~~~----------------~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t   75 (101)
T cd01235          12 LKGWKPRWFVLDPDKHQLRYYDDFED----------------TAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKT   75 (101)
T ss_pred             CCCccceEEEEECCCCEEEEecCCCC----------------CccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEEe
Confidence            45899999999743  4444332211                12345788888888876443211 1    344577776


Q ss_pred             cCCceeeeecChhhhhhHHHHHHHH
Q 010976          454 IHGPVFLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~a~~~~  478 (496)
                      ..-..||.|+|.++++.|++||+.+
T Consensus        76 ~~r~~~~~a~s~~e~~~Wi~ai~~~  100 (101)
T cd01235          76 SKRTYNFLAENINEAQRWKEKIQQC  100 (101)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHhh
Confidence            5544588899999999999999864

Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.99  E-value=0.024  Score=49.69  Aligned_cols=81  Identities=23%  Similarity=0.153  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Q 010976          186 LEEACKKYDEATRLCPTL----------------------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ  243 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~----------------------~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~  243 (496)
                      .+.++..+++++.+....                      ..+...++..+..    .|++++|+       ..+++++.
T Consensus        22 ~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~----~~~~~~a~-------~~~~~~l~   90 (146)
T PF03704_consen   22 PEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLE----AGDYEEAL-------RLLQRALA   90 (146)
T ss_dssp             HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH----TT-HHHHH-------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCHHHHH-------HHHHHHHh
Confidence            888888888888873221                      1233444455555    88888888       89999999


Q ss_pred             cCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHH
Q 010976          244 LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ  287 (496)
Q Consensus       244 l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~  287 (496)
                      .+|.+-.++..+-.+|...|+.          .+|+..|++..+
T Consensus        91 ~dP~~E~~~~~lm~~~~~~g~~----------~~A~~~Y~~~~~  124 (146)
T PF03704_consen   91 LDPYDEEAYRLLMRALAAQGRR----------AEALRVYERYRR  124 (146)
T ss_dssp             HSTT-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCcCH----------HHHHHHHHHHHH
Confidence            9999999999999999999999          999999888754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain

Probab=96.99  E-value=0.0017  Score=54.09  Aligned_cols=96  Identities=23%  Similarity=0.305  Sum_probs=59.1

Q ss_pred             hccccCCCCCCCCCChhhhhhhccccchhhh-------hhhccccccccccccCCCCCCCCCCCceeeeecCceeecccc
Q 010976          366 AGYLTAPPAGIPVAPHSDWKRSQFVLNHEGL-------QQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSAC  438 (496)
Q Consensus       366 ~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (496)
                      .|+|...++.... ....|+++||+|....+       ..+-.. .               .......|+|..+..++..
T Consensus         2 eGwL~K~~~~~~~-~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~-~---------------~~k~~g~I~L~~~~~v~~~   64 (108)
T cd01266           2 EGWLKKSPPYKLL-FRTKWVRRYFVLHCGDRERNLFALEYYKTS-R---------------KFKLEFVIDLESCSQVDPG   64 (108)
T ss_pred             ceeeeeCCccccc-cccCcEEEEEEEeccccCCCcceEEEECCC-C---------------CCccceEEECCccEEEccc
Confidence            3566554332211 23589999999986554       222111 0               1234567888876665432


Q ss_pred             cCC---CCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHH
Q 010976          439 ADL---TLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       439 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  478 (496)
                      ...   .-+..+.|.+.|..-..||.|+|.++++.|+++|+.+
T Consensus        65 ~~~~~~~~~~~~~f~i~t~~r~y~l~A~s~ee~~~Wi~~I~~~  107 (108)
T cd01266          65 LLCTAGNCIFGYGFDIETIVRDLYLVAKNEEEMTLWVNCICKL  107 (108)
T ss_pred             ccccccCcccceEEEEEeCCccEEEEECCHHHHHHHHHHHHhh
Confidence            111   1123567888876555699999999999999999764

Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.93  E-value=0.014  Score=48.19  Aligned_cols=100  Identities=15%  Similarity=0.127  Sum_probs=78.5

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHH
Q 010976          131 GRSRQRILTFAAKRYANAIERNPEDY---DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF  207 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~~---~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~  207 (496)
                      .++..|++-+|++..+..+...+++.   ..+..-|.++..++.   ...+...+...+-.++++|.++..+.|..+..+
T Consensus         5 ~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~---~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    5 DYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAK---KTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             HHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHH---hccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            45678999999999999999998877   556677999988877   333445566678899999999999999998888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc
Q 010976          208 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL  244 (496)
Q Consensus       208 ~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l  244 (496)
                      +.+|.-+..           ...|++++.-.+++|..
T Consensus        82 ~~la~~l~s-----------~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGS-----------VKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhh-----------HHHHHHHHHHHHHHhcc
Confidence            887776654           55555555777777754

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.92  E-value=0.046  Score=59.22  Aligned_cols=90  Identities=18%  Similarity=0.297  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHhcCC----------CCHHHHHHHHHHHHHccCcchHH
Q 010976          204 HDAFYNWAIAISDRAKMRGRTKEAEELWKQA----TKNYEKAVQLNW----------NSPQALNNWGLALQELSAIVPAR  269 (496)
Q Consensus       204 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A----~~~~~~Al~l~P----------~~~~a~~~lg~~l~~~g~~~~A~  269 (496)
                      -..||+.+.-+..    .++.+.|+++|+++    .+.++. |.-+|          .+...|..+|.-+...|+.    
T Consensus       858 r~Tyy~yA~~Lea----r~Di~~AleyyEK~~~hafev~rm-L~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Gem----  928 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEA----RRDIEAALEYYEKAGVHAFEVFRM-LKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEM----  928 (1416)
T ss_pred             hhhHHHHHHHHHh----hccHHHHHHHHHhcCChHHHHHHH-HHhChHHHHHHHHhccchHHHHHHHHHHhcccch----
Confidence            3568888888888    89999999888773    333322 22233          2456677777777777777    


Q ss_pred             HhhhhHHHHHHHHHHHHHh---------------------cCCCHHHHHHHHHHHHHcch
Q 010976          270 EKQTIVRTAISKFRAAIQL---------------------QFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       270 ~~~~~~~~Ai~~~~~Al~l---------------------~P~~~~a~~~lg~~~~~~g~  308 (496)
                            +.|+.+|..|-..                     ...+-.+.|.||.-|-+.|+
T Consensus       929 ------daAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~  982 (1416)
T KOG3617|consen  929 ------DAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGD  982 (1416)
T ss_pred             ------HHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHH
Confidence                  7777777765332                     34667788888888888887

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.89  E-value=0.02  Score=47.28  Aligned_cols=103  Identities=12%  Similarity=0.014  Sum_probs=86.3

Q ss_pred             HHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010976          162 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY  238 (496)
Q Consensus       162 lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~---~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~  238 (496)
                      ++.-++..|+              +-+|++..+..+..++++.   ..+..-|.++..++....+.+--..++.-++++|
T Consensus         2 ~A~~~~~rGn--------------hiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~   67 (111)
T PF04781_consen    2 KAKDYFARGN--------------HIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECF   67 (111)
T ss_pred             hHHHHHHccC--------------HHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHH
Confidence            4566778888              9999999999999988876   5667778888887777777777778888999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh
Q 010976          239 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  288 (496)
Q Consensus       239 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l  288 (496)
                      .++..+.|..+..++.+|.-+.....|          ++++...+++|.+
T Consensus        68 s~a~~Lsp~~A~~L~~la~~l~s~~~Y----------kk~v~kak~~Lsv  107 (111)
T PF04781_consen   68 SRAVELSPDSAHSLFELASQLGSVKYY----------KKAVKKAKRGLSV  107 (111)
T ss_pred             HHHhccChhHHHHHHHHHHHhhhHHHH----------HHHHHHHHHHhcc
Confidence            999999999988888888876666666          8888888888875

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=96.89  E-value=0.0017  Score=53.20  Aligned_cols=53  Identities=15%  Similarity=0.140  Sum_probs=45.1

Q ss_pred             CceeeeecCceeecccccCCCCCCCCeeeEeecCCceeeeecChhhhhhHHHHHH
Q 010976          422 RRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIR  476 (496)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  476 (496)
                      .+...|+|.+..+|....|..  .+++|.|.|.+...+|+|+|.++.+.|+++|.
T Consensus        47 ~p~~vI~L~~c~~v~~~~d~k--~~~~f~i~t~dr~f~l~aese~E~~~Wi~~i~   99 (101)
T cd01257          47 APKRVIPLESCFNINKRADAK--HRHLIALYTRDEYFAVAAENEAEQDSWYQALL   99 (101)
T ss_pred             CceEEEEccceEEEeeccccc--cCeEEEEEeCCceEEEEeCCHHHHHHHHHHHh
Confidence            457789999999988766632  46999999988877999999999999999995

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.89  E-value=0.0018  Score=41.36  Aligned_cols=33  Identities=27%  Similarity=0.368  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976          250 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  292 (496)
Q Consensus       250 ~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~  292 (496)
                      .+|+.+|.+|..+|++          ++|+.+|+++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~----------~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDY----------EEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSH----------HHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCC
Confidence            5789999999999999          99999999999999964

...

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.88  E-value=0.029  Score=54.96  Aligned_cols=112  Identities=14%  Similarity=0.007  Sum_probs=88.2

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh-CCCCH---HHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-CPTLH---DAF  207 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-~P~~~---~a~  207 (496)
                      ....|++-+|...+++.+.-.|.+.-++..--.+++.+|+              ...-...+++.+-. +|+.+   ...
T Consensus       113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~--------------~~~~k~ai~kIip~wn~dlp~~sYv~  178 (491)
T KOG2610|consen  113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGN--------------QIGKKNAIEKIIPKWNADLPCYSYVH  178 (491)
T ss_pred             hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccc--------------hhhhhhHHHHhccccCCCCcHHHHHH
Confidence            3446889999999999999999999888888888888888              77777778888776 66653   333


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchH
Q 010976          208 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA  268 (496)
Q Consensus       208 ~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A  268 (496)
                      -.++..+..    .|-|++|.       +.-++++++|+.+..+...++.++...|++.++
T Consensus       179 GmyaFgL~E----~g~y~dAE-------k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg  228 (491)
T KOG2610|consen  179 GMYAFGLEE----CGIYDDAE-------KQADRALQINRFDCWASHAKAHVLEMNGRHKEG  228 (491)
T ss_pred             HHHHhhHHH----hccchhHH-------HHHHhhccCCCcchHHHHHHHHHHHhcchhhhH
Confidence            445555666    78888887       788888888888888888888888888888443

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=96.88  E-value=0.0013  Score=53.97  Aligned_cols=93  Identities=23%  Similarity=0.308  Sum_probs=61.3

Q ss_pred             hhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCC-C
Q 010976          365 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT-L  443 (496)
Q Consensus       365 ~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  443 (496)
                      +.|+|.....     ....|.++||+|....|........                ......|+|.+ ++|+...+.. .
T Consensus         4 k~G~L~Kkg~-----~~k~WkkRwfvL~~~~L~yyk~~~~----------------~~~~~~I~L~~-~~v~~~~~~~~~   61 (100)
T cd01233           4 KKGYLNFPEE-----TNSGWTRRFVVVRRPYLHIYRSDKD----------------PVERGVINLST-ARVEHSEDQAAM   61 (100)
T ss_pred             eeEEEEeeCC-----CCCCcEEEEEEEECCEEEEEccCCC----------------ccEeeEEEecc-cEEEEccchhhh
Confidence            4577766532     2358999999998776665433221                12245677774 3455444321 1


Q ss_pred             C-CCCeeeEeecCCceeeeecChhhhhhHHHHHHHHH
Q 010976          444 P-PGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       444 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      + ....|.|.|..-..||.|+|.+++.+|.+||.-+|
T Consensus        62 ~~~~~~F~I~t~~rt~~~~A~s~~e~~~Wi~ai~~~~   98 (100)
T cd01233          62 VKGPNTFAVCTKHRGYLFQALSDKEMIDWLYALNPLY   98 (100)
T ss_pred             cCCCcEEEEECCCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence            1 33578888776667999999999999999998776

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.86  E-value=0.002  Score=41.18  Aligned_cols=33  Identities=30%  Similarity=0.491  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC
Q 010976          157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL  203 (496)
Q Consensus       157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~  203 (496)
                      .+|+.+|.+|..+|+              +++|+++|+++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~--------------~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGD--------------YEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTS--------------HHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCC
Confidence            679999999999999              999999999999999953

...

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.86  E-value=0.0032  Score=60.69  Aligned_cols=67  Identities=19%  Similarity=0.213  Sum_probs=62.6

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976          133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  212 (496)
Q Consensus       133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  212 (496)
                      .+.|+.++|...|+.|++++|++++++..+|......++              .-+|-.+|-+|+.++|.+.+++.|+..
T Consensus       127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~--------------iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNE--------------IVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhh--------------hHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            457999999999999999999999999999999999888              999999999999999999999998764


Q ss_pred             H
Q 010976          213 A  213 (496)
Q Consensus       213 ~  213 (496)
                      .
T Consensus       193 T  193 (472)
T KOG3824|consen  193 T  193 (472)
T ss_pred             c
Confidence            4

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.86  E-value=0.067  Score=61.15  Aligned_cols=140  Identities=10%  Similarity=0.006  Sum_probs=123.1

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC--CHHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--LHDAFYN  209 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~--~~~a~~~  209 (496)
                      |.+.+.+++|.++|+.-++..-+....|..+|..++..++              -++|...+.+||+.-|.  +......
T Consensus      1540 y~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne--------------~~aa~~lL~rAL~~lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNE--------------AEAARELLKRALKSLPKQEHVEFISK 1605 (1710)
T ss_pred             HHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccH--------------HHHHHHHHHHHHhhcchhhhHHHHHH
Confidence            4456889999999999999998999999999999999999              99999999999999998  7788888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh-
Q 010976          210 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL-  288 (496)
Q Consensus       210 lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l-  288 (496)
                      .+.+.+.    .|+.+.+.       ..|+..+.-+|.-...|+-+...-.+.|..          +.....|++++.+ 
T Consensus      1606 fAqLEFk----~GDaeRGR-------tlfEgll~ayPKRtDlW~VYid~eik~~~~----------~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1606 FAQLEFK----YGDAERGR-------TLFEGLLSAYPKRTDLWSVYIDMEIKHGDI----------KYVRDLFERVIELK 1664 (1710)
T ss_pred             HHHHHhh----cCCchhhH-------HHHHHHHhhCccchhHHHHHHHHHHccCCH----------HHHHHHHHHHHhcC
Confidence            8999999    99999999       899999999999999999999998888888          9999999999987 


Q ss_pred             -cCCCHHHHHHHHHHHHHc
Q 010976          289 -QFDFHRAIYNLGTVLYGL  306 (496)
Q Consensus       289 -~P~~~~a~~~lg~~~~~~  306 (496)
                       .|....-+|..-.-|-+.
T Consensus      1665 l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1665 LSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred             CChhHhHHHHHHHHHHHHh
Confidence             466666666665555443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=96.82  E-value=0.096  Score=55.52  Aligned_cols=167  Identities=16%  Similarity=0.121  Sum_probs=119.9

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHH--
Q 010976          132 RSRQRILTFAAKRYANAIERNPE----DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD--  205 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~----~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~--  205 (496)
                      +...|+++.|...|++++..+=.    -..+|.++|..-....+              ++.|.++.++|... |....  
T Consensus       397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~--------------~~~Al~lm~~A~~v-P~~~~~~  461 (835)
T KOG2047|consen  397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN--------------FEAALKLMRRATHV-PTNPELE  461 (835)
T ss_pred             HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh--------------HHHHHHHHHhhhcC-CCchhhh
Confidence            44569999999999999987632    36789999988888888              99999999999876 22211  


Q ss_pred             -------HH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhH
Q 010976          206 -------AF---YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV  275 (496)
Q Consensus       206 -------a~---~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~  275 (496)
                             +.   ++--.+...    .-+++++...|+.....|++.+.+.--.|+.-.|.|..+.+..-+          
T Consensus       462 ~yd~~~pvQ~rlhrSlkiWs~----y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yf----------  527 (835)
T KOG2047|consen  462 YYDNSEPVQARLHRSLKIWSM----YADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYF----------  527 (835)
T ss_pred             hhcCCCcHHHHHHHhHHHHHH----HHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHH----------
Confidence                   11   111122222    567778888888888999999999999999999999999888877          


Q ss_pred             HHHHHHHHHHHHhc--CCCHHHHHHHHHHHH-HcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976          276 RTAISKFRAAIQLQ--FDFHRAIYNLGTVLY-GLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  344 (496)
Q Consensus       276 ~~Ai~~~~~Al~l~--P~~~~a~~~lg~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~  344 (496)
                      ++|.+.|++-+.+-  |.-.++|+..-.... +.|..                 ....|...|++|+..-|.
T Consensus       528 eesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~-----------------klEraRdLFEqaL~~Cpp  582 (835)
T KOG2047|consen  528 EESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGT-----------------KLERARDLFEQALDGCPP  582 (835)
T ss_pred             HHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCC-----------------CHHHHHHHHHHHHhcCCH
Confidence            89999999988874  444455554333222 22210                 046677777777777764

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.75  E-value=0.042  Score=59.38  Aligned_cols=142  Identities=19%  Similarity=0.125  Sum_probs=106.1

Q ss_pred             hccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhh-hHHHHHHHHHHHHHhCCCCHHHHH
Q 010976          135 QRILTFAAKRYANAIER-----NPEDYDALYNWALVLQESADNVSLDSTSPSKDA-LLEEACKKYDEATRLCPTLHDAFY  208 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~-----~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~Al~l~P~~~~a~~  208 (496)
                      ..+.+.|+.+|+.+.+.     .-.++.+.+.+|.+|.+..-          ... +++.|+.+|.++-.+  +++.+.+
T Consensus       262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~----------~~~~d~~~A~~~~~~aA~~--g~~~a~~  329 (552)
T KOG1550|consen  262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG----------VEKIDYEKALKLYTKAAEL--GNPDAQY  329 (552)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC----------CccccHHHHHHHHHHHHhc--CCchHHH
Confidence            47999999999999771     11256688999999988542          000 388999999999877  4667889


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh
Q 010976          209 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  288 (496)
Q Consensus       209 ~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l  288 (496)
                      .+|.++..    ..    -.+++.+|..+|..|...  .+..+.++++.+|..-.-.      ..+...|..+|.+|.+.
T Consensus       330 ~lg~~~~~----g~----~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv------~r~~~~A~~~~k~aA~~  393 (552)
T KOG1550|consen  330 LLGVLYET----GT----KERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGV------ERNLELAFAYYKKAAEK  393 (552)
T ss_pred             HHHHHHHc----CC----ccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCc------CCCHHHHHHHHHHHHHc
Confidence            99999976    33    334556666899888765  5899999999998765222      34569999999999998


Q ss_pred             cCCCHHHHHHHHHHHHHc
Q 010976          289 QFDFHRAIYNLGTVLYGL  306 (496)
Q Consensus       289 ~P~~~~a~~~lg~~~~~~  306 (496)
                      +  ++.+.+.++..+..-
T Consensus       394 g--~~~A~~~~~~~~~~g  409 (552)
T KOG1550|consen  394 G--NPSAAYLLGAFYEYG  409 (552)
T ss_pred             c--ChhhHHHHHHHHHHc
Confidence            7  667777777665543

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=96.72  E-value=0.0033  Score=51.91  Aligned_cols=82  Identities=12%  Similarity=0.091  Sum_probs=51.7

Q ss_pred             hhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCcee---ecccccCCC-CC-CCCeeeEeecCC
Q 010976          382 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIV---SVSACADLT-LP-PGAGLCIETIHG  456 (496)
Q Consensus       382 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~-~~~~~~~~~~~~  456 (496)
                      ..|+++||+|....|..+......                ...-.|+|..+.   +|......+ -. ..++|.|.|..-
T Consensus        14 k~wkkRwFvL~~~~L~Yyk~~~d~----------------~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~R   77 (103)
T cd01251          14 EGFKKRWFTLDDRRLMYFKDPLDA----------------FAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPER   77 (103)
T ss_pred             CCceeEEEEEeCCEEEEECCCCCc----------------CcCcEEEeeccccceeEeccCCccccccccceEEEEeCCe
Confidence            469999999997777775443221                122345555332   232211111 11 234899987644


Q ss_pred             ceeeeecChhhhhhHHHHHHHHH
Q 010976          457 PVFLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       457 ~~~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      ..||.|+|.++++.|+.||.-|.
T Consensus        78 ty~l~a~s~~e~~~Wi~ai~~v~  100 (103)
T cd01251          78 KFLFACETEQDRREWIAAFQNVL  100 (103)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHh
Confidence            44899999999999999999875

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=96.69  E-value=0.0027  Score=51.83  Aligned_cols=84  Identities=21%  Similarity=0.241  Sum_probs=62.1

Q ss_pred             ChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCC--CCCCCeeeEeecCCc
Q 010976          380 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT--LPPGAGLCIETIHGP  457 (496)
Q Consensus       380 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  457 (496)
                      ....|+++||+|....|-.......             .  ....-.|+|.++.+|.+|.+-.  ...-++|.|.|..-.
T Consensus        15 ~~K~WkrRwF~L~~~~L~y~K~~~~-------------~--~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~rt   79 (101)
T cd01264          15 FIKRWKTRYFTLSGAQLLFQKGKSK-------------D--DPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKT   79 (101)
T ss_pred             eeecceeEEEEEeCCEEEEEeccCc-------------c--CCCCceEEcccceEEeeccccccccccCcEEEEEcCCce
Confidence            3458999999998766644221110             0  1113589999999999998743  245679999987776


Q ss_pred             eeeeecChhhhhhHHHHHHHH
Q 010976          458 VFLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       458 ~~~~~~~~~~~~~~~~a~~~~  478 (496)
                      .||.|+|....+.|..+|..+
T Consensus        80 ~~l~A~se~e~e~WI~~i~~a  100 (101)
T cd01264          80 YILKAKDEKNAEEWLQCLNIA  100 (101)
T ss_pred             EEEEeCCHHHHHHHHHHHHhh
Confidence            799999999999999999754

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.68  E-value=0.11  Score=48.84  Aligned_cols=123  Identities=16%  Similarity=0.141  Sum_probs=78.3

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh-----CC
Q 010976          133 SRQRILTFAAKRYANAIERNPED------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-----CP  201 (496)
Q Consensus       133 ~~~g~~~~Ai~~~~~al~~~P~~------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-----~P  201 (496)
                      ...++|++|..++.+|++-.-++      +.++-..+.+...+..              +.++..+|++|..+     .|
T Consensus        42 RnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~k--------------lsEvvdl~eKAs~lY~E~Gsp  107 (308)
T KOG1585|consen   42 RNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSK--------------LSEVVDLYEKASELYVECGSP  107 (308)
T ss_pred             HhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHHhCCc
Confidence            34567888888888887544333      3445566777777777              99999999999987     34


Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHH
Q 010976          202 TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISK  281 (496)
Q Consensus       202 ~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~  281 (496)
                      +.+..-...+--...    .-+.++|++.|++++..++.-=+. -.-.+.+...+.+|.++.++          .+|-..
T Consensus       108 dtAAmaleKAak~le----nv~Pd~AlqlYqralavve~~dr~-~ma~el~gk~sr~lVrl~kf----------~Eaa~a  172 (308)
T KOG1585|consen  108 DTAAMALEKAAKALE----NVKPDDALQLYQRALAVVEEDDRD-QMAFELYGKCSRVLVRLEKF----------TEAATA  172 (308)
T ss_pred             chHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHhccchH-HHHHHHHHHhhhHhhhhHHh----------hHHHHH
Confidence            444333333333334    678889997666666655431110 11234566777888888888          666665


Q ss_pred             HHH
Q 010976          282 FRA  284 (496)
Q Consensus       282 ~~~  284 (496)
                      +.+
T Consensus       173 ~lK  175 (308)
T KOG1585|consen  173 FLK  175 (308)
T ss_pred             HHH
Confidence            555

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.66  E-value=0.027  Score=59.55  Aligned_cols=124  Identities=17%  Similarity=0.141  Sum_probs=96.4

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC----CHHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LHDAFYNW  210 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~----~~~a~~~l  210 (496)
                      ....+.|...+....+..|+..-.++..|.++...|+              +++|++.|++++.....    ..-.++.+
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~--------------~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El  311 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGN--------------LEEAIESFERAIESQSEWKQLHHLCYFEL  311 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC--------------HHHHHHHHHHhccchhhHHhHHHHHHHHH
Confidence            4678889999999999999999999999999999999              99999999999864333    34568889


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHH
Q 010976          211 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI  286 (496)
Q Consensus       211 g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al  286 (496)
                      |.++..    +++|++|.       .+|.+.++.+ .......+..|.++..+|+.   .......++|...|+++-
T Consensus       312 ~w~~~~----~~~w~~A~-------~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~---~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  312 AWCHMF----QHDWEEAA-------EYFLRLLKESKWSKAFYAYLAAACLLMLGRE---EEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHH----HchHHHHH-------HHHHHHHhccccHHHHHHHHHHHHHHhhccc---hhhhhhHHHHHHHHHHHH
Confidence            999988    99999998       7888888765 33455667788999999986   111122245555555553

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.63  E-value=0.059  Score=56.98  Aligned_cols=153  Identities=14%  Similarity=0.015  Sum_probs=106.4

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--CCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESAD--NVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  212 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  212 (496)
                      .|+-+.++..+.++.+ ..+--..+..+..+.+...-  ....+    ......+.|.+.++...+..|+..-.++..|.
T Consensus       201 ~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~----~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR  275 (468)
T PF10300_consen  201 SGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGID----GEDVPLEEAEELLEEMLKRYPNSALFLFFEGR  275 (468)
T ss_pred             CCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCc----ccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            3889999999999877 33332333333222221111  00000    02344889999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976          213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  292 (496)
Q Consensus       213 ~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~  292 (496)
                      ++..    .|+.++|++.|++|+..-..   ...-..-+++.+|.++..+++|          ++|..+|.+.++.+.-.
T Consensus       276 ~~~~----~g~~~~Ai~~~~~a~~~q~~---~~Ql~~l~~~El~w~~~~~~~w----------~~A~~~f~~L~~~s~WS  338 (468)
T PF10300_consen  276 LERL----KGNLEEAIESFERAIESQSE---WKQLHHLCYFELAWCHMFQHDW----------EEAAEYFLRLLKESKWS  338 (468)
T ss_pred             HHHH----hcCHHHHHHHHHHhccchhh---HHhHHHHHHHHHHHHHHHHchH----------HHHHHHHHHHHhccccH
Confidence            9999    99999999655554421111   1112456789999999999999          99999999999876543


Q ss_pred             -HHHHHHHHHHHHHcchh
Q 010976          293 -HRAIYNLGTVLYGLAED  309 (496)
Q Consensus       293 -~~a~~~lg~~~~~~g~~  309 (496)
                       ....|..|.++..+++.
T Consensus       339 ka~Y~Y~~a~c~~~l~~~  356 (468)
T PF10300_consen  339 KAFYAYLAAACLLMLGRE  356 (468)
T ss_pred             HHHHHHHHHHHHHhhccc
Confidence             34456678888888874

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.54  E-value=0.2  Score=46.87  Aligned_cols=112  Identities=14%  Similarity=0.084  Sum_probs=65.7

Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhC-----CC-CHHHHHH
Q 010976          136 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-----PT-LHDAFYN  209 (496)
Q Consensus       136 g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~-----P~-~~~a~~~  209 (496)
                      +.+++|.++|.++              |+.|....+              +..|=..|-++-.+.     .+ -+..|..
T Consensus        28 ~k~eeAadl~~~A--------------an~yklaK~--------------w~~AG~aflkaA~~h~k~~skhDaat~Yve   79 (288)
T KOG1586|consen   28 NKYEEAAELYERA--------------ANMYKLAKN--------------WSAAGDAFLKAADLHLKAGSKHDAATTYVE   79 (288)
T ss_pred             cchHHHHHHHHHH--------------HHHHHHHHh--------------HHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence            5788888888887              444555555              666666666655441     11 2344555


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc
Q 010976          210 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ  289 (496)
Q Consensus       210 lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~  289 (496)
                      .+.+|.     .++..+|+.++++|++.|...-+.. .-+.-+..+|.+|..-         +.++++||.+|++|-+.-
T Consensus        80 A~~cyk-----k~~~~eAv~cL~~aieIyt~~Grf~-~aAk~~~~iaEiyEsd---------l~d~ekaI~~YE~Aae~y  144 (288)
T KOG1586|consen   80 AANCYK-----KVDPEEAVNCLEKAIEIYTDMGRFT-MAAKHHIEIAEIYESD---------LQDFEKAIAHYEQAAEYY  144 (288)
T ss_pred             HHHHhh-----ccChHHHHHHHHHHHHHHHhhhHHH-HHHhhhhhHHHHHhhh---------HHHHHHHHHHHHHHHHHH
Confidence            566664     4588888866666666665432211 0122234455555432         345599999999998764


Q ss_pred             C
Q 010976          290 F  290 (496)
Q Consensus       290 P  290 (496)
                      .
T Consensus       145 k  145 (288)
T KOG1586|consen  145 K  145 (288)
T ss_pred             c
Confidence            3

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.52  E-value=0.0072  Score=62.89  Aligned_cols=98  Identities=22%  Similarity=0.202  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 010976          186 LEEACKKYDEATRLCPTLH-DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA  264 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~-~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~  264 (496)
                      ...|++++.+|+.+.|... ....+|+.++..    .|-.-+|-       ..+.++|.++...+-.++.+|.++..+.+
T Consensus       623 ~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~----~~~~~da~-------~~l~q~l~~~~sepl~~~~~g~~~l~l~~  691 (886)
T KOG4507|consen  623 STFAIACLQRALNLAPLQQDVPLVNLANLLIH----YGLHLDAT-------KLLLQALAINSSEPLTFLSLGNAYLALKN  691 (886)
T ss_pred             cHHHHHHHHHHhccChhhhcccHHHHHHHHHH----hhhhccHH-------HHHHHHHhhcccCchHHHhcchhHHHHhh
Confidence            9999999999999999754 457899999988    78777887       78888999998889999999999999999


Q ss_pred             cchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010976          265 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY  304 (496)
Q Consensus       265 ~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~  304 (496)
                      .          +.|+++|++|+.++|+++.+...|-.+-.
T Consensus       692 i----------~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  692 I----------SGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             h----------HHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            9          99999999999999999999888776655

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.48  E-value=0.07  Score=53.83  Aligned_cols=143  Identities=18%  Similarity=0.171  Sum_probs=108.9

Q ss_pred             hHhhccHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC-----
Q 010976          132 RSRQRILTFAAKRYANAIERNP----EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-----  202 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P----~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~-----  202 (496)
                      ..+.|.++.|...+.++...++    ..+.+.+..+.+++..|+              -.+|+..++..+.....     
T Consensus       156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~--------------~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGE--------------QEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHhhhcccc
Confidence            4457999999999999988662    257788889999999999              99999999998882111     


Q ss_pred             ----------------------CHHHHHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010976          203 ----------------------LHDAFYNWAIAISDRAKMRGRTKEAE------ELWKQATKNYEKAVQLNWNSPQALNN  254 (496)
Q Consensus       203 ----------------------~~~a~~~lg~~~~~~~~~~g~~~eA~------~~~~~A~~~~~~Al~l~P~~~~a~~~  254 (496)
                                            ...-.-..+.++..    .|++....      ..++.++..|.++++++|+...+|+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~----~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~  297 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLL----LAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS  297 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHH----HHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence                                  11222344556665    77777666      66777889999999999999999999


Q ss_pred             HHHHHHHccCcchH-------HHhhhhHHHHHHHHHHHHHhcCCC
Q 010976          255 WGLALQELSAIVPA-------REKQTIVRTAISKFRAAIQLQFDF  292 (496)
Q Consensus       255 lg~~l~~~g~~~~A-------~~~~~~~~~Ai~~~~~Al~l~P~~  292 (496)
                      +|..+...-.....       .........|+..|-+++.+.+++
T Consensus       298 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~  342 (352)
T PF02259_consen  298 WALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY  342 (352)
T ss_pred             HHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence            99998877554321       123455678999999999999883

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PRK10941 hypothetical protein; Provisional

Probab=96.47  E-value=0.026  Score=54.89  Aligned_cols=79  Identities=14%  Similarity=0.117  Sum_probs=68.6

Q ss_pred             HHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHH
Q 010976          119 ELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR  198 (496)
Q Consensus       119 ~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~  198 (496)
                      ..+.+.+......+.+.++++.|+.+.+..+.++|+++.-+..+|.+|.++|.              +..|...++..++
T Consensus       178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c--------------~~~A~~DL~~fl~  243 (269)
T PRK10941        178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC--------------EHVALSDLSYFVE  243 (269)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------cHHHHHHHHHHHH
Confidence            34555555555667788999999999999999999999999999999999999              9999999999999


Q ss_pred             hCCCCHHHHHHHH
Q 010976          199 LCPTLHDAFYNWA  211 (496)
Q Consensus       199 l~P~~~~a~~~lg  211 (496)
                      .+|+++.+-.-.-
T Consensus       244 ~~P~dp~a~~ik~  256 (269)
T PRK10941        244 QCPEDPISEMIRA  256 (269)
T ss_pred             hCCCchhHHHHHH
Confidence            9999988765433

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.44  E-value=0.14  Score=48.20  Aligned_cols=174  Identities=14%  Similarity=0.042  Sum_probs=104.5

Q ss_pred             CCCChhhhhhcHHHHHHHHHHhhccch----------------hhhHhhccHHHHHHHHHHHHHhC-----CCCHHHHHH
Q 010976          103 QGNTPHQLAEQNNAAMELINSVTGVDE----------------EGRSRQRILTFAAKRYANAIERN-----PEDYDALYN  161 (496)
Q Consensus       103 ~~~~~~~~~~~~~~A~~~~~~~l~~~~----------------~~~~~~g~~~~Ai~~~~~al~~~-----P~~~~a~~~  161 (496)
                      .+...++.+.++++|-..+.++.....                .-......+.++..+|++|..+.     |+.+..-..
T Consensus        36 kAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmale  115 (308)
T KOG1585|consen   36 KAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALE  115 (308)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHH
Confidence            345566777788888777776663221                00112356777777777777653     443333333


Q ss_pred             HHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010976          162 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEELWKQAT  235 (496)
Q Consensus       162 lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~  235 (496)
                      .+.-..+..+              +++|+.+|++++.+--..      .+.+-..+++|..    ..+|.+|-..+.+-.
T Consensus       116 KAak~lenv~--------------Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr----l~kf~Eaa~a~lKe~  177 (308)
T KOG1585|consen  116 KAAKALENVK--------------PDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR----LEKFTEAATAFLKEG  177 (308)
T ss_pred             HHHHHhhcCC--------------HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh----hHHhhHHHHHHHHhh
Confidence            3333344444              999999999999873332      2345566677877    888888875554433


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHH
Q 010976          236 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL----QFDFHRAIYNLGTVLYG  305 (496)
Q Consensus       236 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l----~P~~~~a~~~lg~~~~~  305 (496)
                      ..+.+.-. -++...++...-.+|....+|          ..|..+|+..-++    .+++..++-||-..|-.
T Consensus       178 ~~~~~~~~-y~~~~k~~va~ilv~L~~~Dy----------v~aekc~r~~~qip~f~~sed~r~lenLL~ayd~  240 (308)
T KOG1585|consen  178 VAADKCDA-YNSQCKAYVAAILVYLYAHDY----------VQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE  240 (308)
T ss_pred             hHHHHHhh-cccHHHHHHHHHHHHhhHHHH----------HHHHHHhcchhcCccccChHHHHHHHHHHHHhcc
Confidence            33332211 122333444444555555577          9999999998776    45667777777666543

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.44  E-value=0.44  Score=48.21  Aligned_cols=185  Identities=17%  Similarity=0.169  Sum_probs=136.1

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010976          138 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDR  217 (496)
Q Consensus       138 ~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~  217 (496)
                      -.++++.=.+.+..+|+...+|+..-.++...-..  .+.....+...+++-+.+...+++.+|+...+|+.+..++.. 
T Consensus        45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~--~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~-  121 (421)
T KOG0529|consen   45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTR--AQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQK-  121 (421)
T ss_pred             chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhh--hcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-
Confidence            35688888889999999999998776666543320  022223445568888999999999999999999999999987 


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010976          218 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY  297 (496)
Q Consensus       218 ~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~  297 (496)
                         .+..     .|.+-+..+.++++.||.|..+|...-.+.......      .....+=+++..++|.-++.|..+|.
T Consensus       122 ---~p~~-----~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~------~~~~~~El~ftt~~I~~nfSNYsaWh  187 (421)
T KOG0529|consen  122 ---NPHS-----DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS------RNLEKEELEFTTKLINDNFSNYSAWH  187 (421)
T ss_pred             ---CCCc-----hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc------cccchhHHHHHHHHHhccchhhhHHH
Confidence               6544     566666999999999999999988776666554332      01125667889999999999999999


Q ss_pred             HHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          298 NLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       298 ~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                      +...++..+-....      .+. .-+.+....-.++...|.--+|++.
T Consensus       188 yRs~lL~~l~~~~~------~g~-~~~~~~l~sEle~v~saiFTdp~Dq  229 (421)
T KOG0529|consen  188 YRSLLLSTLHPKEA------DGN-FMPKELLQSELEMVHSAIFTDPEDQ  229 (421)
T ss_pred             HHHHHHHHhccccc------cCc-cCCHHHHHHHHHHHHHHHhcCcccc
Confidence            99998875543110      000 1235566777778888888899888

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.40  E-value=0.051  Score=53.28  Aligned_cols=119  Identities=18%  Similarity=-0.010  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010976          159 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY  238 (496)
Q Consensus       159 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~  238 (496)
                      ...-+.+++..|+              +-+|....++.|+-.|.+.-++..--.+++.    .|+...-.       ..+
T Consensus       106 ~h~~aai~~~~g~--------------~h~a~~~wdklL~d~PtDlla~kfsh~a~fy----~G~~~~~k-------~ai  160 (491)
T KOG2610|consen  106 RHAKAAILWGRGK--------------HHEAAIEWDKLLDDYPTDLLAVKFSHDAHFY----NGNQIGKK-------NAI  160 (491)
T ss_pred             hhhhHHHhhcccc--------------ccHHHHHHHHHHHhCchhhhhhhhhhhHHHh----ccchhhhh-------hHH
Confidence            3344566777788              9999999999999999998888877778877    89888888       788


Q ss_pred             HHHHhc-CCCC---HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHh
Q 010976          239 EKAVQL-NWNS---PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLR  312 (496)
Q Consensus       239 ~~Al~l-~P~~---~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a  312 (496)
                      ++.+-. |++-   ...+..++..+.+.|-|          ++|.+.-++++++++.+.-+...++.++...|+....
T Consensus       161 ~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y----------~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg  228 (491)
T KOG2610|consen  161 EKIIPKWNADLPCYSYVHGMYAFGLEECGIY----------DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEG  228 (491)
T ss_pred             HHhccccCCCCcHHHHHHHHHHhhHHHhccc----------hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhH
Confidence            888755 6654   66677788899999999          9999999999999999999999999999988875443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.39  E-value=0.053  Score=50.95  Aligned_cols=103  Identities=18%  Similarity=0.111  Sum_probs=80.1

Q ss_pred             hHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC------CHHH
Q 010976          185 LLEEACKKYDEATRL----CPT---LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN------SPQA  251 (496)
Q Consensus       185 ~~~~A~~~~~~Al~l----~P~---~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~------~~~a  251 (496)
                      .+++|++.|.-|+-.    ...   -+..+..++.+|..    +|+.+.....+++|+..|.++++....      ....
T Consensus        92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~----~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l  167 (214)
T PF09986_consen   92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRD----LGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL  167 (214)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence            388888888887754    212   25667888888888    999999999999999999999976632      3578


Q ss_pred             HHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH-HHHHHHHH
Q 010976          252 LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH-RAIYNLGT  301 (496)
Q Consensus       252 ~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~-~a~~~lg~  301 (496)
                      ++.+|.+..++|++          ++|+.+|.+++...-... ..+.+++.
T Consensus       168 ~YLigeL~rrlg~~----------~eA~~~fs~vi~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  168 LYLIGELNRRLGNY----------DEAKRWFSRVIGSKKASKEPKLKDMAR  208 (214)
T ss_pred             HHHHHHHHHHhCCH----------HHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence            88999999999999          999999999998643332 34444444

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.39  E-value=0.15  Score=55.26  Aligned_cols=164  Identities=21%  Similarity=0.127  Sum_probs=117.1

Q ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHH-----hCCCCHHHHHHHH
Q 010976          137 ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-----LCPTLHDAFYNWA  211 (496)
Q Consensus       137 ~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-----l~P~~~~a~~~lg  211 (496)
                      +...|...|+.+...  .+..+.+.+|.+|..-+.         ....+++.|+.+|+.+..     ..-.++.+.+.+|
T Consensus       227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~---------g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg  295 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTY---------GVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLG  295 (552)
T ss_pred             hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccc---------cccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHH
Confidence            467899999998776  478899999999987633         334459999999999977     1112666899999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976          212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  291 (496)
Q Consensus       212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~  291 (496)
                      .+|..    ..-...-  ++.+|+.+|.++-.+  .++.+.+++|.++....       +..++..|..+|..|..  -.
T Consensus       296 ~~Y~~----g~~~~~~--d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~-------~~~d~~~A~~yy~~Aa~--~G  358 (552)
T KOG1550|consen  296 RLYLQ----GLGVEKI--DYEKALKLYTKAAEL--GNPDAQYLLGVLYETGT-------KERDYRRAFEYYSLAAK--AG  358 (552)
T ss_pred             HHHhc----CCCCccc--cHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCC-------ccccHHHHHHHHHHHHH--cC
Confidence            99986    4311110  445555899888777  47889999999998766       11334899999999865  46


Q ss_pred             CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 010976          292 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP  343 (496)
Q Consensus       292 ~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p  343 (496)
                      +..+.++++.+|..-.-      .     ..+    ...|..+|.++-+...
T Consensus       359 ~~~A~~~la~~y~~G~g------v-----~r~----~~~A~~~~k~aA~~g~  395 (552)
T KOG1550|consen  359 HILAIYRLALCYELGLG------V-----ERN----LELAFAYYKKAAEKGN  395 (552)
T ss_pred             ChHHHHHHHHHHHhCCC------c-----CCC----HHHHHHHHHHHHHccC
Confidence            78999999998864311      0     011    4567777777777663

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=96.36  E-value=0.0086  Score=48.70  Aligned_cols=51  Identities=18%  Similarity=0.206  Sum_probs=41.1

Q ss_pred             eeeecCceeecccccCCCCCCCCeeeEeecCC-ceeeeecChhhhhhHHHHHH
Q 010976          425 IRIEVPDIVSVSACADLTLPPGAGLCIETIHG-PVFLVADSWEALDGWLDAIR  476 (496)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~  476 (496)
                      -.|+++.+ +|.++.|..+-.-+.|.+-+..+ -+|+.+++.++.+.|..+|+
T Consensus        45 gli~l~~~-~V~~v~ds~~~r~~cFel~~~~~~~~y~~~a~~~er~~Wi~~l~   96 (98)
T cd01245          45 GLIDLSDA-YLYPVHDSLFGRPNCFQIVERALPTVYYSCRSSEERDKWIESLQ   96 (98)
T ss_pred             ceeecccc-EEEEccccccCCCeEEEEecCCCCeEEEEeCCHHHHHHHHHHHh
Confidence            36788888 99999997666568888876655 46777777799999999986

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.30  E-value=0.81  Score=45.91  Aligned_cols=126  Identities=14%  Similarity=0.140  Sum_probs=89.5

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHc
Q 010976          142 AKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR  221 (496)
Q Consensus       142 i~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~  221 (496)
                      ...|++.++.+|.|.++|..+....-..-......  ........+.-+..|++||+.+|++...+..+-.+...    .
T Consensus         5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~--~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~----~   78 (321)
T PF08424_consen    5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSS--KAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK----V   78 (321)
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccc--hhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----h
Confidence            35678899999999999999987766554311100  22344557788899999999999999988887777766    7


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccCcchHHHhhhhHHHHHHHHHHHHHh
Q 010976          222 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE-LSAIVPAREKQTIVRTAISKFRAAIQL  288 (496)
Q Consensus       222 g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~~A~~~~~~~~~Ai~~~~~Al~l  288 (496)
                      ...++..       +.+++++..+|++...|..+-...+. .+.+        .+......|.++|+.
T Consensus        79 ~~~~~l~-------~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f--------~v~~~~~~y~~~l~~  131 (321)
T PF08424_consen   79 WDSEKLA-------KKWEELLFKNPGSPELWREYLDFRQSNFASF--------TVSDVRDVYEKCLRA  131 (321)
T ss_pred             CCHHHHH-------HHHHHHHHHCCCChHHHHHHHHHHHHHhccC--------cHHHHHHHHHHHHHH
Confidence            7777766       78888999999999888655433332 3332        226666777776654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=96.27  E-value=0.52  Score=50.23  Aligned_cols=140  Identities=16%  Similarity=0.194  Sum_probs=107.6

Q ss_pred             hhccHHHHHHHHHHHHH-hCCCC-----HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC----C
Q 010976          134 RQRILTFAAKRYANAIE-RNPED-----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----L  203 (496)
Q Consensus       134 ~~g~~~~Ai~~~~~al~-~~P~~-----~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~----~  203 (496)
                      ..|+..+-+..|.+|++ .+|.-     ...|..+|..|...|+              ++.|...|++|++.+=.    .
T Consensus       359 ~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~--------------l~~aRvifeka~~V~y~~v~dL  424 (835)
T KOG2047|consen  359 YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD--------------LDDARVIFEKATKVPYKTVEDL  424 (835)
T ss_pred             hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc--------------HHHHHHHHHHhhcCCccchHHH
Confidence            35788889999999875 46643     4789999999999999              99999999999987432    3


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC------------------CCHHHHHHHHHHHHHccCc
Q 010976          204 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW------------------NSPQALNNWGLALQELSAI  265 (496)
Q Consensus       204 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P------------------~~~~a~~~lg~~l~~~g~~  265 (496)
                      +.+|.++|..-..    ..+++.|+       .+.++|...--                  ++...|..++......|-+
T Consensus       425 a~vw~~waemElr----h~~~~~Al-------~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf  493 (835)
T KOG2047|consen  425 AEVWCAWAEMELR----HENFEAAL-------KLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF  493 (835)
T ss_pred             HHHHHHHHHHHHh----hhhHHHHH-------HHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence            6789999988888    88888888       45555543311                  1233455555555555655


Q ss_pred             chHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          266 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       266 ~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                                +.-...|.+.+.+.--.|.+..|.|..+....-
T Consensus       494 ----------estk~vYdriidLriaTPqii~NyAmfLEeh~y  526 (835)
T KOG2047|consen  494 ----------ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKY  526 (835)
T ss_pred             ----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHH
Confidence                      899999999999999999999999998877765

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.25  E-value=0.015  Score=56.25  Aligned_cols=63  Identities=24%  Similarity=0.249  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL  259 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  259 (496)
                      .++|...|+.|++++|++++++..+|.....    ..+.-+|-       .+|-+|+.++|.+.+++.|.....
T Consensus       132 ~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~----~~~iv~AD-------q~Y~~ALtisP~nseALvnR~RT~  194 (472)
T KOG3824|consen  132 LEKAMTLFEHALALAPTNPQILIEMGQFREM----HNEIVEAD-------QCYVKALTISPGNSEALVNRARTT  194 (472)
T ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh----hhhhHhhh-------hhhheeeeeCCCchHHHhhhhccc
Confidence            9999999999999999999999998888877    67777777       899999999999999999987653

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=96.24  E-value=0.0066  Score=49.25  Aligned_cols=79  Identities=13%  Similarity=0.271  Sum_probs=53.2

Q ss_pred             ChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecC-Cce
Q 010976          380 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIH-GPV  458 (496)
Q Consensus       380 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  458 (496)
                      ....|.++||+|....|..+.....                ......|+|... .|..+.+..  ..+.|.|.+.. .+.
T Consensus        16 ~~k~WkkrwfvL~~~~L~yyk~~~~----------------~~~~~~I~L~~~-~v~~~~~~~--k~~~F~I~~~~~~~~   76 (96)
T cd01260          16 MGQKWARRWFVLKGTTLYWYRSKQD----------------EKAEGLIFLSGF-TIESAKEVK--KKYAFKVCHPVYKSF   76 (96)
T ss_pred             cccCceeEEEEEECCEEEEECCCCC----------------CccceEEEccCC-EEEEchhcC--CceEEEECCCCCcEE
Confidence            3458999999998766665433221                112456777754 344443333  45677777666 556


Q ss_pred             eeeecChhhhhhHHHHHHH
Q 010976          459 FLVADSWEALDGWLDAIRL  477 (496)
Q Consensus       459 ~~~~~~~~~~~~~~~a~~~  477 (496)
                      ||.|+|.+++..|++||+.
T Consensus        77 ~f~a~s~~e~~~Wi~ai~~   95 (96)
T cd01260          77 YFAAETLDDLSQWVNHLIT   95 (96)
T ss_pred             EEEeCCHHHHHHHHHHHHh
Confidence            9999999999999999974

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.23  E-value=0.023  Score=58.12  Aligned_cols=103  Identities=17%  Similarity=0.098  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC--------CHHHHHHHHH
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--------SPQALNNWGL  257 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~--------~~~a~~~lg~  257 (496)
                      +.-+..-...++.+..+.+.+.+..+..++.    .|++.+|.+.+      ...-+...|.        .-..|+|+|.
T Consensus       222 Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~----~gn~~kA~KlL------~~sni~~~~g~~~T~q~~~cif~NNlGc  291 (696)
T KOG2471|consen  222 LKLAKREVKHVMNIAQDSSMALLLKSQLEYA----HGNHPKAMKLL------LVSNIHKEAGGTITPQLSSCIFNNNLGC  291 (696)
T ss_pred             HHHHHHhhhhhhhhcCCCcHHHHHHHHHHHH----hcchHHHHHHH------HhcccccccCccccchhhhheeecCcce
Confidence            6666667777777777888888888888888    99999998422      2223333343        2345799999


Q ss_pred             HHHHccCcchHHHhhhhHHHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHHcch
Q 010976          258 ALQELSAIVPAREKQTIVRTAISKFRAAIQL------------------QFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       258 ~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l------------------~P~~~~a~~~lg~~~~~~g~  308 (496)
                      +++++|.|          .-++.+|.+||+-                  .-...++.||.|..|...|+
T Consensus       292 Ih~~~~~y----------~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~gr  350 (696)
T KOG2471|consen  292 IHYQLGCY----------QASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGR  350 (696)
T ss_pred             EeeehhhH----------HHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCC
Confidence            99999999          9999999999961                  12457899999999999998

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.20  E-value=0.027  Score=58.86  Aligned_cols=103  Identities=20%  Similarity=0.117  Sum_probs=89.8

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976          133 SRQRILTFAAKRYANAIERNPEDYD-ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  211 (496)
Q Consensus       133 ~~~g~~~~Ai~~~~~al~~~P~~~~-a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  211 (496)
                      ..+|+...|+.++..|+...|.... ...+|++++...+-              .-.|-.++.+++.++-..+-.++.+|
T Consensus       618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~--------------~~da~~~l~q~l~~~~sepl~~~~~g  683 (886)
T KOG4507|consen  618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGL--------------HLDATKLLLQALAINSSEPLTFLSLG  683 (886)
T ss_pred             eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhh--------------hccHHHHHHHHHhhcccCchHHHhcc
Confidence            3469999999999999999987543 57899999999998              88999999999999988888889989


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010976          212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ  260 (496)
Q Consensus       212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~  260 (496)
                      .++..    +.+.+.|+       +.|+.|+.++|+++.+.+.|-.+-+
T Consensus       684 ~~~l~----l~~i~~a~-------~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  684 NAYLA----LKNISGAL-------EAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             hhHHH----HhhhHHHH-------HHHHHHHhcCCCChhhHHHHHHHHH
Confidence            88888    77777777       8999999999999999887766555

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.17  E-value=0.083  Score=55.47  Aligned_cols=137  Identities=20%  Similarity=0.036  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHH--HHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010976          140 FAAKRYANAIERNPEDYDALYN--WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDR  217 (496)
Q Consensus       140 ~Ai~~~~~al~~~P~~~~a~~~--lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~  217 (496)
                      -++..+...+.++|.++..+..  +...+...++              ...++-....++..+|++..++.+||.++.. 
T Consensus        49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~-  113 (620)
T COG3914          49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLAD--------------STLAFLAKRIPLSVNPENCPAVQNLAAALEL-  113 (620)
T ss_pred             HHHHHHHccCccCCCCHHHHHHHHHHhhcccccc--------------chhHHHHHhhhHhcCcccchHHHHHHHHHHH-
Confidence            3677777777788888877443  4677777777              8889999999999999999999999999988 


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010976          218 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY  297 (496)
Q Consensus       218 ~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~  297 (496)
                         .|....++.      ...+.+....|++.+....+-.+|. ++++   ...+++..++.....+++.+.|.++.+..
T Consensus       114 ---~~~~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~---~~~l~~~~~~~~~l~~~~d~~p~~~~~~~  180 (620)
T COG3914         114 ---DGLQFLALA------DISEIAEWLSPDNAEFLGHLIRFYQ-LGRY---LKLLGRTAEAELALERAVDLLPKYPRVLG  180 (620)
T ss_pred             ---hhhHHHHHH------HHHHHHHhcCcchHHHHhhHHHHHH-HHHH---HHHhccHHHHHHHHHHHHHhhhhhhhhHh
Confidence               777766663      4555588889999998888855555 5555   34444448899999999999999977766


Q ss_pred             HHHHHHH
Q 010976          298 NLGTVLY  304 (496)
Q Consensus       298 ~lg~~~~  304 (496)
                      .+.....
T Consensus       181 ~~~~~r~  187 (620)
T COG3914         181 ALMTARQ  187 (620)
T ss_pred             HHHHHHH
Confidence            6666633

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.16  E-value=0.011  Score=37.20  Aligned_cols=33  Identities=27%  Similarity=0.386  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC
Q 010976          157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL  203 (496)
Q Consensus       157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~  203 (496)
                      ++++.+|.++..+|+              +++|++.|++++...|++
T Consensus         1 ~a~~~~a~~~~~~g~--------------~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGD--------------YDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCH--------------HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccC--------------HHHHHHHHHHHHHHCcCC
Confidence            578999999999999              999999999999999974

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.13  E-value=0.011  Score=38.55  Aligned_cols=28  Identities=32%  Similarity=0.477  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh
Q 010976          158 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL  199 (496)
Q Consensus       158 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l  199 (496)
                      +|.+||.+|..+|+              |++|+.+|+++|.+
T Consensus         1 al~~Lg~~~~~~g~--------------~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGD--------------YEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT---------------HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCC--------------HHHHHHHHHHHHHh
Confidence            57899999999999              99999999997765

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.12  E-value=0.27  Score=44.85  Aligned_cols=117  Identities=13%  Similarity=0.017  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHH
Q 010976          140 FAAKRYANAIERNPEDY---DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFYNWAIA  213 (496)
Q Consensus       140 ~Ai~~~~~al~~~P~~~---~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~  213 (496)
                      +.+...++.+.-++...   -+-..++..+...++              +++|+..++.++..-.+   ..-+-.+|+.+
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~--------------~d~A~aqL~~~l~~t~De~lk~l~~lRLArv  135 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANN--------------LDKAEAQLKQALAQTKDENLKALAALRLARV  135 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHHccchhHHHHHHHHHHHHHH
Confidence            34444444444554443   234466788888898              99999999999865333   23456788999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976          214 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  292 (496)
Q Consensus       214 ~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~  292 (496)
                      ...    +|++++|+       ..+.....  +. .+..--..|.++...|+-          ++|+..|.+|++.+++.
T Consensus       136 q~q----~~k~D~AL-------~~L~t~~~--~~w~~~~~elrGDill~kg~k----------~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         136 QLQ----QKKADAAL-------KTLDTIKE--ESWAAIVAELRGDILLAKGDK----------QEARAAYEKALESDASP  192 (207)
T ss_pred             HHH----hhhHHHHH-------HHHhcccc--ccHHHHHHHHhhhHHHHcCch----------HHHHHHHHHHHHccCCh
Confidence            999    99999999       44443211  11 122345679999999999          99999999999997554


Q ss_pred             H
Q 010976          293 H  293 (496)
Q Consensus       293 ~  293 (496)
                      +
T Consensus       193 ~  193 (207)
T COG2976         193 A  193 (207)
T ss_pred             H
Confidence            3

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.08  E-value=1.8  Score=43.69  Aligned_cols=212  Identities=18%  Similarity=0.062  Sum_probs=121.4

Q ss_pred             hhhcHHHHHHHHHHhhccch------hhh----HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-------
Q 010976          110 LAEQNNAAMELINSVTGVDE------EGR----SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADN-------  172 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~l~~~~------~~~----~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~-------  172 (496)
                      ..|+++.|..-|+.+++.-.      .|+    .++|+.+.|+.+-+.+-...|.-+.++...-......|+.       
T Consensus       132 ~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLv  211 (531)
T COG3898         132 LEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLV  211 (531)
T ss_pred             hcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHH
Confidence            45777777777776665441      122    2357888888888888888887777666555555555551       


Q ss_pred             --------CCCCCCC------------cchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010976          173 --------VSLDSTS------------PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK  232 (496)
Q Consensus       173 --------~~~~~~~------------~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~  232 (496)
                              +.++...            ..-..+...|...-.+++++.|+...+-..-+.+|+.    .|+..++-    
T Consensus       212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~----d~~~rKg~----  283 (531)
T COG3898         212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFR----DGNLRKGS----  283 (531)
T ss_pred             HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh----ccchhhhh----
Confidence                    0000000            0112235566666777777788877777777788888    88888887    


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH---HHhcCCCHHHHHHHHHHHHHcchh
Q 010976          233 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA---IQLQFDFHRAIYNLGTVLYGLAED  309 (496)
Q Consensus       233 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A---l~l~P~~~~a~~~lg~~~~~~g~~  309 (496)
                         ..++.+-+.+|+ +.    ++.+|....--          +.++.-++++   .++.|+|.+.....+..-+.-|+.
T Consensus       284 ---~ilE~aWK~ePH-P~----ia~lY~~ar~g----------dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~  345 (531)
T COG3898         284 ---KILETAWKAEPH-PD----IALLYVRARSG----------DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEF  345 (531)
T ss_pred             ---hHHHHHHhcCCC-hH----HHHHHHHhcCC----------CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccch
Confidence               677777777764 22    23334333333          3344444443   345788888888888777777765


Q ss_pred             HHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHH
Q 010976          310 TLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV  347 (496)
Q Consensus       310 ~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~  347 (496)
                      ..+....-......|.+.+......++.+-.-|.....
T Consensus       346 ~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR  383 (531)
T COG3898         346 SAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVR  383 (531)
T ss_pred             HHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHH
Confidence            43332221122344444343444444555444444443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.07  E-value=0.084  Score=42.31  Aligned_cols=66  Identities=20%  Similarity=0.071  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccCc
Q 010976          189 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS--PQALNNWGLALQELSAI  265 (496)
Q Consensus       189 A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~--~~a~~~lg~~l~~~g~~  265 (496)
                      .+..+++.++.+|++..+.+.++..+..    .|++++|+       +.+-..++.++++  ..+...+-.++..+|.-
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~----~g~~e~Al-------~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~   74 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLA----AGDYEEAL-------DQLLELVRRDRDYEDDAARKRLLDIFELLGPG   74 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHH----TT-HHHHH-------HHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence            4678899999999999999999999999    99999999       8888999888765  66666666677777775

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=96.04  E-value=0.012  Score=47.27  Aligned_cols=79  Identities=16%  Similarity=0.186  Sum_probs=47.8

Q ss_pred             ChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCce-
Q 010976          380 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-  458 (496)
Q Consensus       380 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  458 (496)
                      ....|+++||+|....|..+-......              ....-.|+|....-+....     ....|.|.+..+.+ 
T Consensus        11 ~~k~Wk~RwFvL~~g~L~Yyk~~~~~~--------------~~~~G~I~L~~~~i~~~~~-----~~~~F~i~~~~~r~~   71 (91)
T cd01247          11 YINGWQDRYFVLKEGNLSYYKSEAEKS--------------HGCRGSIFLKKAIIAAHEF-----DENRFDISVNENVVW   71 (91)
T ss_pred             ccCCCceEEEEEECCEEEEEecCccCc--------------CCCcEEEECcccEEEcCCC-----CCCEEEEEeCCCeEE
Confidence            345899999999755555433211100              0123456666432222111     13466676555456 


Q ss_pred             eeeecChhhhhhHHHHHHH
Q 010976          459 FLVADSWEALDGWLDAIRL  477 (496)
Q Consensus       459 ~~~~~~~~~~~~~~~a~~~  477 (496)
                      ||.|+|.++.+.|++||..
T Consensus        72 ~L~A~s~~e~~~Wi~al~~   90 (91)
T cd01247          72 YLRAENSQSRLLWMDSVVR   90 (91)
T ss_pred             EEEeCCHHHHHHHHHHHhh
Confidence            9999999999999999963

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.01  E-value=0.012  Score=38.22  Aligned_cols=29  Identities=31%  Similarity=0.426  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc
Q 010976          251 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ  289 (496)
Q Consensus       251 a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~  289 (496)
                      +|.+||.+|..+|++          ++|+.+|+++|.+.
T Consensus         1 al~~Lg~~~~~~g~~----------~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDY----------EKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-H----------HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCH----------HHHHHHHHHHHHhc
Confidence            588999999999999          99999999976553

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=95.91  E-value=0.027  Score=58.21  Aligned_cols=89  Identities=24%  Similarity=0.124  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      ...|+..|.++++..|.....+.+++.++..++.. |+.-.|+       ..+..|+++||....+|+.|+.++.+++++
T Consensus       390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~-~d~~~Al-------rDch~Alrln~s~~kah~~la~aL~el~r~  461 (758)
T KOG1310|consen  390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWR-GDSYLAL-------RDCHVALRLNPSIQKAHFRLARALNELTRY  461 (758)
T ss_pred             HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhcc-ccHHHHH-------HhHHhhccCChHHHHHHHHHHHHHHHHhhH
Confidence            88899999999999999999999999999874332 3555555       899999999999999999999999999999


Q ss_pred             chHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976          266 VPAREKQTIVRTAISKFRAAIQLQFDF  292 (496)
Q Consensus       266 ~~A~~~~~~~~~Ai~~~~~Al~l~P~~  292 (496)
                                .+|+.+...+....|.+
T Consensus       462 ----------~eal~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  462 ----------LEALSCHWALQMSFPTD  478 (758)
T ss_pred             ----------HHhhhhHHHHhhcCchh
Confidence                      99998877766666743

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.88  E-value=1.5  Score=43.08  Aligned_cols=178  Identities=21%  Similarity=0.118  Sum_probs=120.6

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976          133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  212 (496)
Q Consensus       133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  212 (496)
                      ...+++..|+..|..+-..  .++.+...++.+|..-.-          ...+..+|+..|+.+  .+..++.+.++||.
T Consensus        52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~g----------v~~~~~~A~~~~~~~--a~~g~~~a~~~lg~  117 (292)
T COG0790          52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKG----------VSRDKTKAADWYRCA--AADGLAEALFNLGL  117 (292)
T ss_pred             cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccC----------ccccHHHHHHHHHHH--hhcccHHHHHhHHH
Confidence            3467888899999888763  344788888888876442          223388999999944  56678899999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976          213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS-PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  291 (496)
Q Consensus       213 ~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~  291 (496)
                      +|..     |+-  ...++.+|...|++|.+..-.. ..+.+++|.+|..-. ..  ..-..+...|+..|+++-...  
T Consensus       118 ~~~~-----G~g--v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~--~~~~~~~~~A~~~~~~aa~~~--  185 (292)
T COG0790         118 MYAN-----GRG--VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QA--LAVAYDDKKALYLYRKAAELG--  185 (292)
T ss_pred             HHhc-----CCC--cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hh--hcccHHHHhHHHHHHHHHHhc--
Confidence            9975     321  1224455558999998875332 344899999888753 10  111122358999999998876  


Q ss_pred             CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHH
Q 010976          292 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSA  351 (496)
Q Consensus       292 ~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~a  351 (496)
                      ++.+.+++|.+|..- .     +...         .+..|..+|.++-+.......|...
T Consensus       186 ~~~a~~~lg~~y~~G-~-----Gv~~---------d~~~A~~wy~~Aa~~g~~~a~~~~~  230 (292)
T COG0790         186 NPDAQLLLGRMYEKG-L-----GVPR---------DLKKAFRWYKKAAEQGDGAACYNLG  230 (292)
T ss_pred             CHHHHHHHHHHHHcC-C-----CCCc---------CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            889999999776543 1     1111         1688999999998887733344433

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=95.88  E-value=0.015  Score=47.14  Aligned_cols=78  Identities=14%  Similarity=0.156  Sum_probs=49.8

Q ss_pred             hhhhhhhccccchh--hhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCce
Q 010976          381 HSDWKRSQFVLNHE--GLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV  458 (496)
Q Consensus       381 ~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (496)
                      ...|+++||+|+..  -|..+.....                ..+.-.|+|..+..+....+    ....|.|-|..--.
T Consensus        14 ~K~WkkRWFvL~~~~~~L~Yyk~~~d----------------~~p~G~I~L~~~~~~~~~~~----~~~~F~i~t~~r~y   73 (95)
T cd01265          14 LRGRRSRWFALDDRTCYLYYYKDSQD----------------AKPLGRVDLSGAAFTYDPRE----EKGRFEIHSNNEVI   73 (95)
T ss_pred             CcCceeEEEEEcCCCcEEEEECCCCc----------------ccccceEECCccEEEcCCCC----CCCEEEEEcCCcEE
Confidence            45899999999743  2444332211                12344666666443322222    23578888654445


Q ss_pred             eeeecChhhhhhHHHHHHHH
Q 010976          459 FLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       459 ~~~~~~~~~~~~~~~a~~~~  478 (496)
                      +|.|+|.++++.|+.||...
T Consensus        74 ~l~A~s~~e~~~Wi~al~~~   93 (95)
T cd01265          74 ALKASSDKQMNYWLQALQSK   93 (95)
T ss_pred             EEECCCHHHHHHHHHHHHhh
Confidence            99999999999999999754

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.81  E-value=0.097  Score=41.94  Aligned_cols=70  Identities=24%  Similarity=0.165  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHH
Q 010976          141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL--HDAFYNWAIAISDRA  218 (496)
Q Consensus       141 Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~--~~a~~~lg~~~~~~~  218 (496)
                      .+..+++.++.+|++.++.+.+|..+...|+              +++|++.+-.+++.++++  -.+...+-.++..  
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~--------------~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~--   70 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGD--------------YEEALDQLLELVRRDRDYEDDAARKRLLDIFEL--   70 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH--
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCccccccHHHHHHHHHHHH--
Confidence            5678899999999999999999999999999              999999999999998875  4455554445544  


Q ss_pred             HHcCCHHHHH
Q 010976          219 KMRGRTKEAE  228 (496)
Q Consensus       219 ~~~g~~~eA~  228 (496)
                        +|.-+.-.
T Consensus        71 --lg~~~plv   78 (90)
T PF14561_consen   71 --LGPGDPLV   78 (90)
T ss_dssp             --H-TT-HHH
T ss_pred             --cCCCChHH
Confidence              66654444

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.77  E-value=0.29  Score=49.16  Aligned_cols=131  Identities=11%  Similarity=0.081  Sum_probs=98.7

Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010976          136 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS  215 (496)
Q Consensus       136 g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~  215 (496)
                      ...+.-+..|++||+.+|++...+..+-.+..+..+              -++..+.+++++..+|++...|..+-....
T Consensus        45 a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~--------------~~~l~~~we~~l~~~~~~~~LW~~yL~~~q  110 (321)
T PF08424_consen   45 ALAERKLSILERALKHNPDSERLLLGYLEEGEKVWD--------------SEKLAKKWEELLFKNPGSPELWREYLDFRQ  110 (321)
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence            445678899999999999999999988888888888              889999999999999999988876543332


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHhcC----C-------CCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHH
Q 010976          216 DRAKMRGRTKEAEELWKQATKNYEKAVQLN----W-------NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA  284 (496)
Q Consensus       216 ~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~----P-------~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~  284 (496)
                      .. ...-.+......|.+++..+.....-.    +       .......++...+.+.|..          +.|+..++.
T Consensus       111 ~~-~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~----------E~Ava~~Qa  179 (321)
T PF08424_consen  111 SN-FASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYT----------ERAVALWQA  179 (321)
T ss_pred             HH-hccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCch----------HHHHHHHHH
Confidence            10 012357788888888877777665442    1       1234456666777777777          999999999


Q ss_pred             HHHhcCC
Q 010976          285 AIQLQFD  291 (496)
Q Consensus       285 Al~l~P~  291 (496)
                      .++++-.
T Consensus       180 ~lE~n~~  186 (321)
T PF08424_consen  180 LLEFNFF  186 (321)
T ss_pred             HHHHHcC
Confidence            9998643

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.75  E-value=0.017  Score=36.28  Aligned_cols=33  Identities=24%  Similarity=0.181  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976          250 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  292 (496)
Q Consensus       250 ~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~  292 (496)
                      ++++++|.++..+|++          ++|+..|++.++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~----------~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDY----------DEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHH----------HHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCH----------HHHHHHHHHHHHHCcCC
Confidence            4789999999999999          99999999999999974

>smart00028 TPR Tetratricopeptide repeats

Probab=95.68  E-value=0.016  Score=35.18  Aligned_cols=33  Identities=27%  Similarity=0.344  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976          250 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  292 (496)
Q Consensus       250 ~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~  292 (496)
                      .+++++|.++..+|++          ++|+.+|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~----------~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDY----------DEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhH----------HHHHHHHHHHHccCCCC
Confidence            5788999999999999          99999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>smart00028 TPR Tetratricopeptide repeats

Probab=95.60  E-value=0.021  Score=34.55  Aligned_cols=33  Identities=33%  Similarity=0.463  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC
Q 010976          157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL  203 (496)
Q Consensus       157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~  203 (496)
                      .+++.+|.++..+++              +++|+..|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~--------------~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGD--------------YDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhh--------------HHHHHHHHHHHHccCCCC
Confidence            568899999999999              999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.60  E-value=0.63  Score=45.24  Aligned_cols=114  Identities=18%  Similarity=0.077  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010976          157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK  236 (496)
Q Consensus       157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~  236 (496)
                      +.-+.-+.-....++              +.+|...|..++...|++.++...++.+|..    .|+.+.|.       .
T Consensus       135 e~~~~~~~~~~~~e~--------------~~~a~~~~~~al~~~~~~~~~~~~la~~~l~----~g~~e~A~-------~  189 (304)
T COG3118         135 EEALAEAKELIEAED--------------FGEAAPLLKQALQAAPENSEAKLLLAECLLA----AGDVEAAQ-------A  189 (304)
T ss_pred             HHHHHHhhhhhhccc--------------hhhHHHHHHHHHHhCcccchHHHHHHHHHHH----cCChHHHH-------H
Confidence            344455666677788              9999999999999999999999999999999    99999888       3


Q ss_pred             HHHHHHhcCCCCHHH--HHH---HHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhH
Q 010976          237 NYEKAVQLNWNSPQA--LNN---WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT  310 (496)
Q Consensus       237 ~~~~Al~l~P~~~~a--~~~---lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~  310 (496)
                      .+.    ..|.+...  +..   .-..+.+....          . =+..+++.+..+|++..+.+.++..+...|+..
T Consensus       190 iL~----~lP~~~~~~~~~~l~a~i~ll~qaa~~----------~-~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e  253 (304)
T COG3118         190 ILA----ALPLQAQDKAAHGLQAQIELLEQAAAT----------P-EIQDLQRRLAADPDDVEAALALADQLHLVGRNE  253 (304)
T ss_pred             HHH----hCcccchhhHHHHHHHHHHHHHHHhcC----------C-CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence            333    22332211  111   11233333332          2 234577788889999999999999999999843

>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain

Probab=95.55  E-value=0.016  Score=49.12  Aligned_cols=95  Identities=16%  Similarity=0.217  Sum_probs=55.9

Q ss_pred             hccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeeccc--ccCCCC
Q 010976          366 AGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSA--CADLTL  443 (496)
Q Consensus       366 ~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  443 (496)
                      +|+|+.-..   ......|+|+||+|...-+.....++...             ...+...|+|........  +-.-.-
T Consensus         4 ~GfL~~~q~---~~~~k~W~RRWFvL~g~~L~y~k~p~d~~-------------~~~Plg~I~L~~c~~~~v~~~~r~~c   67 (122)
T cd01263           4 HGFLTMFED---TSGFGAWHRRWCALEGGEIKYWKYPDDEK-------------RKGPTGLIDLSTCTSSEGASAVRDIC   67 (122)
T ss_pred             ceeEEEEec---cCCCCCceEEEEEEeCCEEEEEcCCCccc-------------cCCceEEEEhhhCcccccccCChhhc
Confidence            567765221   13456899999999855555544433311             012345666665433222  222234


Q ss_pred             CCCCeeeEeecCCc--------------------eeeeecChhhhhhHHHHHH
Q 010976          444 PPGAGLCIETIHGP--------------------VFLVADSWEALDGWLDAIR  476 (496)
Q Consensus       444 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~a~~  476 (496)
                      |+..+|.+++..-.                    +||-||+.++++.|+.||.
T Consensus        68 ~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain  120 (122)
T cd01263          68 ARPNTFHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLN  120 (122)
T ss_pred             CCCCeEEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHh
Confidence            55666666543211                    5888999999999999985

Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>PRK10941 hypothetical protein; Provisional

Probab=95.52  E-value=0.15  Score=49.55  Aligned_cols=75  Identities=13%  Similarity=0.106  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH
Q 010976          206 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA  285 (496)
Q Consensus       206 a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A  285 (496)
                      ...|+-.+|..    .++++.|+       .+.+..+.++|+++.-+..+|.+|.++|.+          ..|+..++.-
T Consensus       183 ml~nLK~~~~~----~~~~~~AL-------~~~e~ll~l~P~dp~e~RDRGll~~qL~c~----------~~A~~DL~~f  241 (269)
T PRK10941        183 LLDTLKAALME----EKQMELAL-------RASEALLQFDPEDPYEIRDRGLIYAQLDCE----------HVALSDLSYF  241 (269)
T ss_pred             HHHHHHHHHHH----cCcHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCc----------HHHHHHHHHH
Confidence            35566667777    88888888       899999999999999999999999999999          9999999999


Q ss_pred             HHhcCCCHHHHHHHHH
Q 010976          286 IQLQFDFHRAIYNLGT  301 (496)
Q Consensus       286 l~l~P~~~~a~~~lg~  301 (496)
                      ++..|+++.+-.-.-.
T Consensus       242 l~~~P~dp~a~~ik~q  257 (269)
T PRK10941        242 VEQCPEDPISEMIRAQ  257 (269)
T ss_pred             HHhCCCchhHHHHHHH
Confidence            9999999876554433

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain

Probab=95.48  E-value=0.027  Score=45.11  Aligned_cols=81  Identities=20%  Similarity=0.281  Sum_probs=51.4

Q ss_pred             hhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCceee
Q 010976          381 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFL  460 (496)
Q Consensus       381 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (496)
                      ...|.++||+|....|..........              ......|++... ++..+.+.. -..+.|.|.|...+.+|
T Consensus        13 ~~~W~kr~~~L~~~~l~~y~~~~~~~--------------~~~~~~i~l~~~-~v~~~~~~~-~~~~~f~i~~~~~~~~f   76 (94)
T cd01250          13 NKEWKKRWFVLKNGQLTYHHRLKDYD--------------NAHVKEIDLRRC-TVRHNGKQP-DRRFCFEVISPTKTWHF   76 (94)
T ss_pred             CCCceEEEEEEeCCeEEEEcCCcccc--------------cccceEEeccce-EEecCcccc-CCceEEEEEcCCcEEEE
Confidence            45799999999866666533322100              112234555432 233332221 14678888877776799


Q ss_pred             eecChhhhhhHHHHHHH
Q 010976          461 VADSWEALDGWLDAIRL  477 (496)
Q Consensus       461 ~~~~~~~~~~~~~a~~~  477 (496)
                      .|+|.+++..|++||+.
T Consensus        77 ~a~s~~~~~~Wi~al~~   93 (94)
T cd01250          77 QADSEEERDDWISAIQE   93 (94)
T ss_pred             ECCCHHHHHHHHHHHhc
Confidence            99999999999999963

Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.45  E-value=1.1  Score=45.80  Aligned_cols=162  Identities=14%  Similarity=0.128  Sum_probs=98.9

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh-----CCC------------------
Q 010976          146 ANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-----CPT------------------  202 (496)
Q Consensus       146 ~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-----~P~------------------  202 (496)
                      -..++.+|-+.+++..++.++..+|+              ++.|.+.+++||-.     .|.                  
T Consensus        30 ~~ll~~~PyHidtLlqls~v~~~~gd--------------~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~   95 (360)
T PF04910_consen   30 INLLQKNPYHIDTLLQLSEVYRQQGD--------------HAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYR   95 (360)
T ss_pred             HHHHHHCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCc
Confidence            34568899999999999999999999              88888888887643     111                  


Q ss_pred             ---CH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-CHHH-HHHHHHHHHHccCcchHHHhhhh
Q 010976          203 ---LH---DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-SPQA-LNNWGLALQELSAIVPAREKQTI  274 (496)
Q Consensus       203 ---~~---~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~-~~~a-~~~lg~~l~~~g~~~~A~~~~~~  274 (496)
                         |-   .+.+.....+.+    .|-+.-|+       +.++-.+.+||. ++-. ++.+-....+.+++         
T Consensus        96 ~~eNR~fflal~r~i~~L~~----RG~~rTAl-------E~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y---------  155 (360)
T PF04910_consen   96 RPENRQFFLALFRYIQSLGR----RGCWRTAL-------EWCKLLLSLDPDEDPLGVLLFIDYYALRSRQY---------  155 (360)
T ss_pred             cccchHHHHHHHHHHHHHHh----cCcHHHHH-------HHHHHHHhcCCCCCcchhHHHHHHHHHhcCCH---------
Confidence               11   123333444444    66666666       899999999998 6654 44445555566666         


Q ss_pred             HHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          275 VRTAISKFRAAIQLQF-----DFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       275 ~~~Ai~~~~~Al~l~P-----~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                       +-=+..++.......     .-|...+.++.+++.+++.....    .............|...+.+|+..-|...
T Consensus       156 -~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~----~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl  227 (360)
T PF04910_consen  156 -QWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQ----SSAQSGRSENSESADEALQKAILRFPWVL  227 (360)
T ss_pred             -HHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccc----cccccccccchhHHHHHHHHHHHHhHHHH
Confidence             555555555443111     13456778888888888741000    00001111123556666777776666443

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.39  E-value=0.18  Score=52.05  Aligned_cols=89  Identities=15%  Similarity=0.093  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 010976          140 FAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAK  219 (496)
Q Consensus       140 ~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~  219 (496)
                      .-...|+.|+...+.|...|.++.....+.+.              +.+--+.|.+++..+|++++.|..-+.-.+.   
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~--------------~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe---  151 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKT--------------YGEVKKIFAAMLAKHPNNPDLWIYAAKWEFE---  151 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcc--------------hhHHHHHHHHHHHhCCCCchhHHhhhhhHHh---
Confidence            34568999999999999999999999999888              9999999999999999999999988877777   


Q ss_pred             HcCC-HHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 010976          220 MRGR-TKEAEELWKQATKNYEKAVQLNWNSPQALN  253 (496)
Q Consensus       220 ~~g~-~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~  253 (496)
                       .+. .+.|.       ..+.++|+.+|+++..|.
T Consensus       152 -~n~ni~saR-------alflrgLR~npdsp~Lw~  178 (568)
T KOG2396|consen  152 -INLNIESAR-------ALFLRGLRFNPDSPKLWK  178 (568)
T ss_pred             -hccchHHHH-------HHHHHHhhcCCCChHHHH
Confidence             554 66666       899999999999988764

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.39  E-value=0.36  Score=46.02  Aligned_cols=144  Identities=10%  Similarity=0.033  Sum_probs=115.9

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHH-HHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLE-EACKKYDEATRLCPTLHDAFYNWAIA  213 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~Al~l~P~~~~a~~~lg~~  213 (496)
                      ..++.+-++++.+.+.-+|.+..+|..+-.+....|+              +. .-+++...++..+..+..+|..+-.+
T Consensus        91 ~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d--------------~s~rELef~~~~l~~DaKNYHaWshRqW~  156 (318)
T KOG0530|consen   91 MSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGD--------------PSFRELEFTKLMLDDDAKNYHAWSHRQWV  156 (318)
T ss_pred             HHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcC--------------cccchHHHHHHHHhccccchhhhHHHHHH
Confidence            3678889999999999999999999999999999998              77 78899999999999999999999988


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH
Q 010976          214 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH  293 (496)
Q Consensus       214 ~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~  293 (496)
                      ...    .+.++.-+       .+..+.|+.|-.|-.+|+..-.+........    ....++.-+.+..+.|.+.|+|.
T Consensus       157 ~r~----F~~~~~EL-------~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~----~~~~le~El~yt~~~I~~vP~Ne  221 (318)
T KOG0530|consen  157 LRF----FKDYEDEL-------AYADELLEEDIRNNSAWNQRYFVITNTKGVI----SKAELERELNYTKDKILLVPNNE  221 (318)
T ss_pred             HHH----HhhHHHHH-------HHHHHHHHHhhhccchhheeeEEEEeccCCc----cHHHHHHHHHHHHHHHHhCCCCc
Confidence            888    77777777       8888899888777777776654444422221    11223556677888899999999


Q ss_pred             HHHHHHHHHHHH-cc
Q 010976          294 RAIYNLGTVLYG-LA  307 (496)
Q Consensus       294 ~a~~~lg~~~~~-~g  307 (496)
                      .+|+.|.-++.. .|
T Consensus       222 SaWnYL~G~l~~d~g  236 (318)
T KOG0530|consen  222 SAWNYLKGLLELDSG  236 (318)
T ss_pred             cHHHHHHHHHHhccC
Confidence            999999888875 44

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.36  E-value=0.29  Score=51.57  Aligned_cols=127  Identities=15%  Similarity=0.011  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYN--WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS  263 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~--lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g  263 (496)
                      -.-++..+...+.++|.++..+..  +...+..    .+....+.       .....++..||.+..++.+||.++...|
T Consensus        47 ~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~----~~~~~~~~-------~~~~~~l~~~~~~~~~~~~L~~ale~~~  115 (620)
T COG3914          47 QALAIYALLLGIAINDVNPELLLAAFLSILLAP----LADSTLAF-------LAKRIPLSVNPENCPAVQNLAAALELDG  115 (620)
T ss_pred             hhHHHHHHHccCccCCCCHHHHHHHHHHhhccc----cccchhHH-------HHHhhhHhcCcccchHHHHHHHHHHHhh
Confidence            334677777777889998877433  4777777    88886766       6889999999999999999999999888


Q ss_pred             CcchHHHhhhhHHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 010976          264 AIVPAREKQTIVRTAIS-KFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK  342 (496)
Q Consensus       264 ~~~~A~~~~~~~~~Ai~-~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~  342 (496)
                      ..          -.++. ..+.+....|++......+-.+|. .++.......            -.++..+++++..+.
T Consensus       116 ~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~------------~~~~~~~l~~~~d~~  172 (620)
T COG3914         116 LQ----------FLALADISEIAEWLSPDNAEFLGHLIRFYQ-LGRYLKLLGR------------TAEAELALERAVDLL  172 (620)
T ss_pred             hH----------HHHHHHHHHHHHhcCcchHHHHhhHHHHHH-HHHHHHHhcc------------HHHHHHHHHHHHHhh
Confidence            77          55554 445599999999998888855555 5543332222            355666677788888


Q ss_pred             CcHH
Q 010976          343 PSYS  346 (496)
Q Consensus       343 p~~~  346 (496)
                      |.++
T Consensus       173 p~~~  176 (620)
T COG3914         173 PKYP  176 (620)
T ss_pred             hhhh
Confidence            8776

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.32  E-value=0.045  Score=36.29  Aligned_cols=36  Identities=33%  Similarity=0.328  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Q 010976          204 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ  243 (496)
Q Consensus       204 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~  243 (496)
                      +.++.++|.+|..    +|++++|+..+++++..+++.+.
T Consensus         2 a~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~G   37 (42)
T PF13374_consen    2 ASALNNLANAYRA----QGRYEEALELLEEALEIRERLLG   37 (42)
T ss_dssp             HHHHHHHHHHHHH----CT-HHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHh----hhhcchhhHHHHHHHHHHHHHhc
Confidence            4678999999999    99999999999999988888754

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=95.17  E-value=0.044  Score=44.09  Aligned_cols=85  Identities=22%  Similarity=0.280  Sum_probs=63.0

Q ss_pred             ChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCC----CCCCCCeeeEeecC
Q 010976          380 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL----TLPPGAGLCIETIH  455 (496)
Q Consensus       380 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  455 (496)
                      ....|.+++|+|....|.-......             .........|++.++ .|....+.    ..+..+.|.|.+..
T Consensus        13 ~~~~wk~r~~vL~~~~L~~~~~~~~-------------~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~   78 (104)
T PF00169_consen   13 SRKKWKKRYFVLRDSYLLYYKSSKD-------------KSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPN   78 (104)
T ss_dssp             SSSSEEEEEEEEETTEEEEESSTTT-------------TTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETT
T ss_pred             CCCCeEEEEEEEECCEEEEEecCcc-------------ccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCC
Confidence            3458999999998766554433321             011245678888888 66655554    46689999999888


Q ss_pred             C-ceeeeecChhhhhhHHHHHHHH
Q 010976          456 G-PVFLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       456 ~-~~~~~~~~~~~~~~~~~a~~~~  478 (496)
                      + ..+|.++|.+++..|.++|..+
T Consensus        79 ~~~~~~~~~s~~~~~~W~~~i~~~  102 (104)
T PF00169_consen   79 GKSYLFSAESEEERKRWIQAIQKA  102 (104)
T ss_dssp             SEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHHH
Confidence            8 6799999999999999999876

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=95.15  E-value=0.1  Score=54.08  Aligned_cols=91  Identities=23%  Similarity=0.128  Sum_probs=76.8

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  214 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~  214 (496)
                      .+....|+..|.+++...|.....+.+++.++.+.+-           .++.-.|+..+..|++++|....+|+.|+.++
T Consensus       387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW-----------~~d~~~AlrDch~Alrln~s~~kah~~la~aL  455 (758)
T KOG1310|consen  387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKW-----------RGDSYLALRDCHVALRLNPSIQKAHFRLARAL  455 (758)
T ss_pred             hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhc-----------cccHHHHHHhHHhhccCChHHHHHHHHHHHHH
Confidence            5678889999999999999999999999999988764           12266788999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010976          215 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN  247 (496)
Q Consensus       215 ~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~  247 (496)
                      ..    ++++.+|+       .+...+....|.
T Consensus       456 ~e----l~r~~eal-------~~~~alq~~~Pt  477 (758)
T KOG1310|consen  456 NE----LTRYLEAL-------SCHWALQMSFPT  477 (758)
T ss_pred             HH----HhhHHHhh-------hhHHHHhhcCch
Confidence            99    99999999       455444455553

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.11  E-value=0.22  Score=51.44  Aligned_cols=95  Identities=12%  Similarity=0.017  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      ...-...|++|+...+.+...|.++......    .+.+.+-.       ..|.+++..+|+++..|..-+.-.+..+..
T Consensus        87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk----~~~~~~v~-------ki~~~~l~~Hp~~~dLWI~aA~wefe~n~n  155 (568)
T KOG2396|consen   87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKK----KKTYGEVK-------KIFAAMLAKHPNNPDLWIYAAKWEFEINLN  155 (568)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hcchhHHH-------HHHHHHHHhCCCCchhHHhhhhhHHhhccc
Confidence            4556788999999999999999998766665    55566655       899999999999999999999888887772


Q ss_pred             chHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010976          266 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG  300 (496)
Q Consensus       266 ~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg  300 (496)
                               ++.|.+.|.++|+.+|+++..|...=
T Consensus       156 ---------i~saRalflrgLR~npdsp~Lw~eyf  181 (568)
T KOG2396|consen  156 ---------IESARALFLRGLRFNPDSPKLWKEYF  181 (568)
T ss_pred             ---------hHHHHHHHHHHhhcCCCChHHHHHHH
Confidence                     39999999999999999998776543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.09  E-value=0.1  Score=37.17  Aligned_cols=43  Identities=21%  Similarity=0.241  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010976          205 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA  258 (496)
Q Consensus       205 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  258 (496)
                      +.+|.++..+..    +|+|.+|.       .+.+.+|+++|+|.++......+
T Consensus         2 d~lY~lAig~yk----l~~Y~~A~-------~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYK----LGEYEKAR-------RYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHH----TT-HHHHH-------HHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHH----hhhHHHHH-------HHHHHHHhhCCCcHHHHHHHHHH
Confidence            467899999999    99999999       89999999999999987665544

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=94.92  E-value=0.79  Score=38.39  Aligned_cols=90  Identities=20%  Similarity=0.157  Sum_probs=66.4

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh
Q 010976          132 RSRQRILTFAAKRYANAIERNPE------------DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL  199 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l  199 (496)
                      ....|.|++|...|++|....-.            ++-++..|+..+..+|+              |++++..-+++|..
T Consensus        19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgr--------------y~e~L~sA~~aL~Y   84 (144)
T PF12968_consen   19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGR--------------YDECLQSADRALRY   84 (144)
T ss_dssp             HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHHHH
Confidence            34458899999999999987522            34567788899999999              99999888888865


Q ss_pred             -------CCCC----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 010976          200 -------CPTL----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE  239 (496)
Q Consensus       200 -------~P~~----~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~  239 (496)
                             +.+.    ..+.++++.++..    +|+.++|++.|+.|.+...
T Consensus        85 FNRRGEL~qdeGklWIaaVfsra~Al~~----~Gr~~eA~~~fr~agEMia  131 (144)
T PF12968_consen   85 FNRRGELHQDEGKLWIAAVFSRAVALEG----LGRKEEALKEFRMAGEMIA  131 (144)
T ss_dssp             HHHH--TTSTHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHH
T ss_pred             HhhccccccccchhHHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHHH
Confidence                   4443    3456889999999    9999999976666655543

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.90  E-value=0.5  Score=47.84  Aligned_cols=147  Identities=18%  Similarity=0.182  Sum_probs=110.3

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  214 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~  214 (496)
                      +..+++-+.+...+++.+|+...+|+.+..++.+.+.            .++..=++.++++++.||.+..+|..+-.+.
T Consensus        88 ~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~------------~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~  155 (421)
T KOG0529|consen   88 QALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH------------SDWNTELQLCEKALKQDPRNFHAWHYRRFVV  155 (421)
T ss_pred             HHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC------------chHHHHHHHHHHHHhcCcccccchHHHHHHH
Confidence            4567888899999999999999999999999998776            2378889999999999999999888776666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHH---hhhhHHHHHHHHHHHHHhcCC
Q 010976          215 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE---KQTIVRTAISKFRAAIQLQFD  291 (496)
Q Consensus       215 ~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~---~~~~~~~Ai~~~~~Al~l~P~  291 (496)
                      ..    ....   .....+-++...++|.-|+.|..+|.+...++..+-.- ++..   ....+..-+..-..|+-.+|+
T Consensus       156 ~~----~~~~---~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~-~~~g~~~~~~~l~sEle~v~saiFTdp~  227 (421)
T KOG0529|consen  156 EQ----AERS---RNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPK-EADGNFMPKELLQSELEMVHSAIFTDPE  227 (421)
T ss_pred             HH----Hhcc---cccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccc-cccCccCCHHHHHHHHHHHHHHHhcCcc
Confidence            55    2222   00122223788999999999999999999888754321 0000   122345666777888888999


Q ss_pred             CHHHHHHHHH
Q 010976          292 FHRAIYNLGT  301 (496)
Q Consensus       292 ~~~a~~~lg~  301 (496)
                      +..+|+..-+
T Consensus       228 DqS~WfY~rW  237 (421)
T KOG0529|consen  228 DQSCWFYHRW  237 (421)
T ss_pred             ccceeeehHH
Confidence            9999887333

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.79  E-value=2.1  Score=37.96  Aligned_cols=84  Identities=18%  Similarity=0.023  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010976          157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK  236 (496)
Q Consensus       157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~  236 (496)
                      .++..+..+-...++              .+++...+...--+.|+.+..-..-|..+..    .|++.+|+       .
T Consensus        11 ~gLie~~~~al~~~~--------------~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~----r~~w~dA~-------r   65 (160)
T PF09613_consen   11 GGLIEVLSVALRLGD--------------PDDAEALLDALRVLRPEFPELDLFDGWLHIV----RGDWDDAL-------R   65 (160)
T ss_pred             HHHHHHHHHHHccCC--------------hHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----hCCHHHHH-------H
Confidence            345555666666677              9999999999999999999999999999999    99999999       8


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          237 NYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       237 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      .++...+..|..+.+.-.++.|++.+|+.
T Consensus        66 lLr~l~~~~~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   66 LLRELEERAPGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             HHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence            99998888999999999999999999985

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.77  E-value=1.2  Score=45.47  Aligned_cols=94  Identities=18%  Similarity=0.153  Sum_probs=72.4

Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc-------CC------------CC---HHHHH
Q 010976          196 ATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL-------NW------------NS---PQALN  253 (496)
Q Consensus       196 Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l-------~P------------~~---~~a~~  253 (496)
                      .++.+|.+.+++..++.++..    +|+...|.+..++|+-.|++++.-       ++            .|   ..+++
T Consensus        32 ll~~~PyHidtLlqls~v~~~----~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~  107 (360)
T PF04910_consen   32 LLQKNPYHIDTLLQLSEVYRQ----QGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALF  107 (360)
T ss_pred             HHHHCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHH
Confidence            345689999999999999999    999999999999999999977622       21            12   23556


Q ss_pred             HHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHH
Q 010976          254 NWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-FHRAIYNLGTVL  303 (496)
Q Consensus       254 ~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~-~~~a~~~lg~~~  303 (496)
                      .....+.+.|-+          ..|.++.+-.+.+||. ++-.....-..|
T Consensus       108 r~i~~L~~RG~~----------rTAlE~~KlLlsLdp~~DP~g~ll~ID~~  148 (360)
T PF04910_consen  108 RYIQSLGRRGCW----------RTALEWCKLLLSLDPDEDPLGVLLFIDYY  148 (360)
T ss_pred             HHHHHHHhcCcH----------HHHHHHHHHHHhcCCCCCcchhHHHHHHH
Confidence            666677777777          9999999999999998 775444333333

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.69  E-value=0.16  Score=36.17  Aligned_cols=43  Identities=21%  Similarity=0.176  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976          157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA  213 (496)
Q Consensus       157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  213 (496)
                      +.+|.+|..++++|+              |++|..+.+.+|+++|+|..+......+
T Consensus         2 d~lY~lAig~ykl~~--------------Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGE--------------YEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhh--------------HHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            467899999999999              9999999999999999998876654433

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.61  E-value=1.8  Score=38.49  Aligned_cols=82  Identities=17%  Similarity=0.042  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH
Q 010976          206 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA  285 (496)
Q Consensus       206 a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A  285 (496)
                      .+..+..+-..    .++.+++.       ..+...-.+.|+.+..-..-|.++...|++          .+|+..|+.+
T Consensus        12 gLie~~~~al~----~~~~~D~e-------~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w----------~dA~rlLr~l   70 (160)
T PF09613_consen   12 GLIEVLSVALR----LGDPDDAE-------ALLDALRVLRPEFPELDLFDGWLHIVRGDW----------DDALRLLREL   70 (160)
T ss_pred             HHHHHHHHHHc----cCChHHHH-------HHHHHHHHhCCCchHHHHHHHHHHHHhCCH----------HHHHHHHHHH
Confidence            34444444445    77888887       777777789999999999999999999999          9999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHcch
Q 010976          286 IQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       286 l~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                      ..-.|..+.+--.++.|++.+++
T Consensus        71 ~~~~~~~p~~kALlA~CL~~~~D   93 (160)
T PF09613_consen   71 EERAPGFPYAKALLALCLYALGD   93 (160)
T ss_pred             hccCCCChHHHHHHHHHHHHcCC
Confidence            99999999999999999999997

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=94.53  E-value=0.063  Score=42.58  Aligned_cols=77  Identities=23%  Similarity=0.333  Sum_probs=49.5

Q ss_pred             hhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCC-ceee
Q 010976          382 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHG-PVFL  460 (496)
Q Consensus       382 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  460 (496)
                      ..|.++||+|....|..+.......              ......|++.+.. ++...  .  ..+.|.|.+..+ ..+|
T Consensus        13 ~~W~~r~~vl~~~~L~~~~~~~~~~--------------~~~~~~i~l~~~~-~~~~~--~--~~~~F~i~~~~~~~~~~   73 (91)
T cd01246          13 KGWQKRWFVLDNGLLSYYKNKSSMR--------------GKPRGTILLSGAV-ISEDD--S--DDKCFTIDTGGDKTLHL   73 (91)
T ss_pred             CCceeeEEEEECCEEEEEecCccCC--------------CCceEEEEeceEE-EEECC--C--CCcEEEEEcCCCCEEEE
Confidence            5899999999866665543322210              1223345555432 22211  1  257899988774 4599


Q ss_pred             eecChhhhhhHHHHHHH
Q 010976          461 VADSWEALDGWLDAIRL  477 (496)
Q Consensus       461 ~~~~~~~~~~~~~a~~~  477 (496)
                      .|+|.+++..|+.||+-
T Consensus        74 ~a~s~~e~~~Wi~al~~   90 (91)
T cd01246          74 RANSEEERQRWVDALEL   90 (91)
T ss_pred             ECCCHHHHHHHHHHHHh
Confidence            99999999999999974

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>smart00233 PH Pleckstrin homology domain

Probab=94.08  E-value=0.11  Score=41.17  Aligned_cols=86  Identities=24%  Similarity=0.336  Sum_probs=59.8

Q ss_pred             ChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCC-CCCCCeeeEeecCC-c
Q 010976          380 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT-LPPGAGLCIETIHG-P  457 (496)
Q Consensus       380 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~  457 (496)
                      ....|.+++++|....+.-........             .......|++.++ ++....+.. .+...+|.+.+..+ .
T Consensus        14 ~~~~~~~~~~~L~~~~l~~~~~~~~~~-------------~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~f~l~~~~~~~   79 (102)
T smart00233       14 KKKSWKKRYFVLFNSTLLYYKSEKAKK-------------DYKPKGSIDLSGI-TVREAPDPDSAKKPHCFEIKTADRRS   79 (102)
T ss_pred             ccCCceEEEEEEECCEEEEEeCCCccc-------------cCCCceEEECCcC-EEEeCCCCccCCCceEEEEEecCCce
Confidence            345799999999876555433322210             0344667888877 666555543 34567888887777 6


Q ss_pred             eeeeecChhhhhhHHHHHHHHH
Q 010976          458 VFLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       458 ~~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      .+|.++|.+++..|.++|+.+.
T Consensus        80 ~~f~~~s~~~~~~W~~~i~~~~  101 (102)
T smart00233       80 YLLQAESEEEREEWVDALRKAI  101 (102)
T ss_pred             EEEEcCCHHHHHHHHHHHHHhh
Confidence            6899999999999999998753

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.08  E-value=1.2  Score=50.63  Aligned_cols=112  Identities=16%  Similarity=0.175  Sum_probs=89.2

Q ss_pred             chhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976          181 SKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL  257 (496)
Q Consensus       181 ~~~~~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  257 (496)
                      ...+.|++|+..|++.-.-.|..   .++.+..|+.+...+...|+.    +.|.+|+.-|++. .-.|.-|--|...+.
T Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  560 (932)
T PRK13184        486 LAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDP----RDFTQALSEFSYL-HGGVGAPLEYLGKAL  560 (932)
T ss_pred             HhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCCh----HHHHHHHHHHHHh-cCCCCCchHHHhHHH
Confidence            34678999999999999999874   578999999999866666654    5667777888764 445777888999999


Q ss_pred             HHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976          258 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  307 (496)
Q Consensus       258 ~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g  307 (496)
                      +|+.+|++          ++-+++|.-|++..|+++.+-...-.+.+++.
T Consensus       561 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  600 (932)
T PRK13184        561 VYQRLGEY----------NEEIKSLLLALKRYSQHPEISRLRDHLVYRLH  600 (932)
T ss_pred             HHHHhhhH----------HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence            99999999          99999999999999998876555555555444

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=94.03  E-value=0.084  Score=45.08  Aligned_cols=78  Identities=19%  Similarity=0.279  Sum_probs=47.3

Q ss_pred             hhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCC-----
Q 010976          382 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHG-----  456 (496)
Q Consensus       382 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  456 (496)
                      ..|.++||+|....|........                ......|+|.++ .|+.+.+..-  .+.|.|.+..+     
T Consensus        14 ~~WkkRwfvL~~~~L~yyk~~~~----------------~~~~g~I~L~~~-~v~~~~~~~~--~~~F~i~~~~~~~~i~   74 (125)
T cd01252          14 KTWKRRWFILTDNCLYYFEYTTD----------------KEPRGIIPLENV-SIREVEDPSK--PFCFELFSPSDKQQIK   74 (125)
T ss_pred             CCeEeEEEEEECCEEEEEcCCCC----------------CCceEEEECCCc-EEEEcccCCC--CeeEEEECCccccccc
Confidence            57999999998666655432211                123456677643 3444433222  23444433222     


Q ss_pred             ---------------ce-eeeecChhhhhhHHHHHHHH
Q 010976          457 ---------------PV-FLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       457 ---------------~~-~~~~~~~~~~~~~~~a~~~~  478 (496)
                                     .+ ||-|+|.+++..|++||+-+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~  112 (125)
T cd01252          75 ACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKAS  112 (125)
T ss_pred             cccccccccccccCceEEEEECCCHHHHHHHHHHHHHH
Confidence                           35 48899999999999999754

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.03  E-value=2.3  Score=44.11  Aligned_cols=142  Identities=15%  Similarity=0.073  Sum_probs=96.7

Q ss_pred             hhHhhccHHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhC
Q 010976          131 GRSRQRILTFAAKRYANAIERN---PE-------DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC  200 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~---P~-------~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~  200 (496)
                      +..-.|++.+|+..........   |.       .+..++.+|.....-+.              ++.|...|..|+++-
T Consensus       332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~--------------~enAe~hf~~a~k~t  397 (629)
T KOG2300|consen  332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNC--------------YENAEFHFIEATKLT  397 (629)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcch--------------HHHHHHHHHHHHHhh
Confidence            3444699999998877776543   44       35677788888888888              999999999999984


Q ss_pred             CC-C--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHccCcch
Q 010976          201 PT-L--HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS----------PQALNNWGLALQELSAIVP  267 (496)
Q Consensus       201 P~-~--~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~----------~~a~~~lg~~l~~~g~~~~  267 (496)
                      -. +  +.+..|+++.|..    .|+-+.-.          +-.=.+.|.|          ..+++-.|...+..+++  
T Consensus       398 ~~~dl~a~~nlnlAi~YL~----~~~~ed~y----------~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~l--  461 (629)
T KOG2300|consen  398 ESIDLQAFCNLNLAISYLR----IGDAEDLY----------KALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDL--  461 (629)
T ss_pred             hHHHHHHHHHHhHHHHHHH----hccHHHHH----------HHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccH--
Confidence            43 2  3456788999988    77543322          2222334442          34567777777888888  


Q ss_pred             HHHhhhhHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcchhH
Q 010976          268 AREKQTIVRTAISKFRAAIQLQFD------FHRAIYNLGTVLYGLAEDT  310 (496)
Q Consensus       268 A~~~~~~~~~Ai~~~~~Al~l~P~------~~~a~~~lg~~~~~~g~~~  310 (496)
                              .+|....++.|+..-.      ..-.+..||.+....|+..
T Consensus       462 --------nEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~  502 (629)
T KOG2300|consen  462 --------NEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTV  502 (629)
T ss_pred             --------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence                    9999999999988611      1223445666777777643

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.01  E-value=0.089  Score=49.02  Aligned_cols=58  Identities=22%  Similarity=0.298  Sum_probs=54.2

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHH
Q 010976          134 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD  205 (496)
Q Consensus       134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~  205 (496)
                      ..++.+.|.+.|.+++.+.|+....|+.+|....+.|+              ++.|.+.|++.++++|.+..
T Consensus         7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~--------------~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGE--------------FDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhccc--------------HHHHHHHHHHHHcCCccccc
Confidence            45888999999999999999999999999999999999              99999999999999998653

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.96  E-value=0.086  Score=49.13  Aligned_cols=55  Identities=20%  Similarity=0.313  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 010976          185 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ  250 (496)
Q Consensus       185 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~  250 (496)
                      +.+.|.+.|.+++++.|.....|+.+|.....    .|+++.|.       +.|++.++++|.+..
T Consensus        10 D~~aaaely~qal~lap~w~~gwfR~g~~~ek----ag~~daAa-------~a~~~~L~ldp~D~~   64 (287)
T COG4976          10 DAEAAAELYNQALELAPEWAAGWFRLGEYTEK----AGEFDAAA-------AAYEEVLELDPEDHG   64 (287)
T ss_pred             ChHHHHHHHHHHhhcCchhhhhhhhcchhhhh----cccHHHHH-------HHHHHHHcCCccccc
Confidence            39999999999999999999999999999988    99999988       899999999997643

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=93.94  E-value=0.29  Score=47.07  Aligned_cols=79  Identities=15%  Similarity=0.078  Sum_probs=65.6

Q ss_pred             HHHhhccchhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhC
Q 010976          121 INSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC  200 (496)
Q Consensus       121 ~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~  200 (496)
                      +.+.+...-..+...++++.|..+.++.+.++|+++.-+...|.+|.++|.              +..|++.++..++.+
T Consensus       180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c--------------~~vAl~dl~~~~~~~  245 (269)
T COG2912         180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC--------------YHVALEDLSYFVEHC  245 (269)
T ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC--------------chhhHHHHHHHHHhC
Confidence            333333333445667899999999999999999999999999999999999              999999999999999


Q ss_pred             CCCHHHHHHHHHH
Q 010976          201 PTLHDAFYNWAIA  213 (496)
Q Consensus       201 P~~~~a~~~lg~~  213 (496)
                      |+.+.+-.-....
T Consensus       246 P~~~~a~~ir~~l  258 (269)
T COG2912         246 PDDPIAEMIRAQL  258 (269)
T ss_pred             CCchHHHHHHHHH
Confidence            9998776554433

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=93.76  E-value=0.5  Score=44.43  Aligned_cols=102  Identities=15%  Similarity=0.143  Sum_probs=72.7

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcC------CCHH
Q 010976          221 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF------DFHR  294 (496)
Q Consensus       221 ~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P------~~~~  294 (496)
                      ...+++|++.|.-|+-+++..-...-.-+..+..++.+|..+|+.   .....-+..|...|++|++...      +...
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~---~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~  166 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDE---ENEKRFLRKALEFYEEAYENEDFPIEGMDEAT  166 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence            446677776666666654432111112366788899999999985   4455556888888888887643      2357


Q ss_pred             HHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976          295 AIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  344 (496)
Q Consensus       295 a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~  344 (496)
                      +.|.+|.+..++|+                   +.+|..+|.+.+...-.
T Consensus       167 l~YLigeL~rrlg~-------------------~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  167 LLYLIGELNRRLGN-------------------YDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHHHHHHHHHhCC-------------------HHHHHHHHHHHHcCCCC
Confidence            89999999999999                   88999999888775443

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.69  E-value=1.8  Score=37.21  Aligned_cols=83  Identities=16%  Similarity=0.139  Sum_probs=65.2

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010976          155 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-LCPT-LHDAFYNWAIAISDRAKMRGRTKEAEELWK  232 (496)
Q Consensus       155 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-l~P~-~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~  232 (496)
                      .....+++++++....+           ..+..+.+..++..++ -.|. .-+..|.|+..+++    +++|++++    
T Consensus        31 s~~s~f~lAwaLV~S~~-----------~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR----lkeY~~s~----   91 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRD-----------TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR----LKEYSKSL----   91 (149)
T ss_pred             hHHHHHHHHHHHHcccc-----------hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH----HhhHHHHH----
Confidence            35667888888877665           2348889999999997 5555 45678899999999    88888888    


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010976          233 QATKNYEKAVQLNWNSPQALNNWGLAL  259 (496)
Q Consensus       233 ~A~~~~~~Al~l~P~~~~a~~~lg~~l  259 (496)
                         .+.+..++.+|+|.++....-.+.
T Consensus        92 ---~yvd~ll~~e~~n~Qa~~Lk~~ie  115 (149)
T KOG3364|consen   92 ---RYVDALLETEPNNRQALELKETIE  115 (149)
T ss_pred             ---HHHHHHHhhCCCcHHHHHHHHHHH
Confidence               899999999999988775544443

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.66  E-value=0.47  Score=36.43  Aligned_cols=44  Identities=18%  Similarity=0.119  Sum_probs=36.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 010976          221 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA  264 (496)
Q Consensus       221 ~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~  264 (496)
                      .|++.+|+.+|++|++.+.+++...|+++.-......+...+.+
T Consensus        19 ~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~R   62 (75)
T cd02682          19 EGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRR   62 (75)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988866655555444433

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.58  E-value=3.8  Score=36.86  Aligned_cols=136  Identities=19%  Similarity=0.104  Sum_probs=98.7

Q ss_pred             hccHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC----CHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPEDY--DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LHDAFY  208 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~--~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~----~~~a~~  208 (496)
                      .+..++|+..|...-+-.-...  -+....|.+..+.|+              -..|+..|..+-.-.|-    .--+..
T Consensus        71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgd--------------ta~AV~aFdeia~dt~~P~~~rd~ARl  136 (221)
T COG4649          71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGD--------------TAAAVAAFDEIAADTSIPQIGRDLARL  136 (221)
T ss_pred             cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhccc--------------HHHHHHHHHHHhccCCCcchhhHHHHH
Confidence            4667888888887766554333  355667889999999              99999999998776443    123455


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHH
Q 010976          209 NWAIAISDRAKMRGRTKEAEELWKQATKNYE-KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ  287 (496)
Q Consensus       209 ~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~-~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~  287 (496)
                      .-+.++.+    .|-|++-.       ...+ -+..-+|--..+.-.||.+-++.|++          ..|...|.+...
T Consensus       137 raa~lLvD----~gsy~dV~-------srvepLa~d~n~mR~sArEALglAa~kagd~----------a~A~~~F~qia~  195 (221)
T COG4649         137 RAAYLLVD----NGSYDDVS-------SRVEPLAGDGNPMRHSAREALGLAAYKAGDF----------AKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHhc----cccHHHHH-------HHhhhccCCCChhHHHHHHHHhHHHHhccch----------HHHHHHHHHHHc
Confidence            55677777    88888766       2222 12344566677888999999999999          999999999877


Q ss_pred             hcCCCHHHHHHHHHHHHHc
Q 010976          288 LQFDFHRAIYNLGTVLYGL  306 (496)
Q Consensus       288 l~P~~~~a~~~lg~~~~~~  306 (496)
                       +.+-++...+.+.++..+
T Consensus       196 -Da~aprnirqRAq~mldl  213 (221)
T COG4649         196 -DAQAPRNIRQRAQIMLDL  213 (221)
T ss_pred             -cccCcHHHHHHHHHHHHH
Confidence             666677777777776654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=93.56  E-value=2.1  Score=46.44  Aligned_cols=74  Identities=16%  Similarity=0.259  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHHHh----------cCCC-CHHHHHHHHHHHHHccCcchH
Q 010976          206 AFYNWAIAISDRAKMRGRTKEAEELW------KQATKNYEKAVQ----------LNWN-SPQALNNWGLALQELSAIVPA  268 (496)
Q Consensus       206 a~~~lg~~~~~~~~~~g~~~eA~~~~------~~A~~~~~~Al~----------l~P~-~~~a~~~lg~~l~~~g~~~~A  268 (496)
                      .|..-+.-+-.    .|+|.+|.++|      ++||..|.+.-.          ..|+ -...+..+|.-|...|+..+|
T Consensus       826 ~yiakaedlde----hgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaa  901 (1636)
T KOG3616|consen  826 LYIAKAEDLDE----HGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAA  901 (1636)
T ss_pred             HHHHhHHhHHh----hcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHH
Confidence            34444555555    89999999887      678888876421          1232 245778888888889998766


Q ss_pred             H---HhhhhHHHHHHHHH
Q 010976          269 R---EKQTIVRTAISKFR  283 (496)
Q Consensus       269 ~---~~~~~~~~Ai~~~~  283 (496)
                      .   -+.|++..|+..|+
T Consensus       902 e~~flea~d~kaavnmyk  919 (1636)
T KOG3616|consen  902 EEHFLEAGDFKAAVNMYK  919 (1636)
T ss_pred             HHHHHhhhhHHHHHHHhh
Confidence            2   24556665555443

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.55  E-value=3  Score=46.99  Aligned_cols=39  Identities=13%  Similarity=0.104  Sum_probs=32.0

Q ss_pred             HHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976          269 REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  307 (496)
Q Consensus       269 ~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g  307 (496)
                      ++..|.+++-|..++.+|-+..-+...+..||.+|.+-.
T Consensus      1289 Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1289 YQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred             HHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC
Confidence            346788899999999998888888888888888887665

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.55  E-value=0.15  Score=33.70  Aligned_cols=31  Identities=23%  Similarity=0.323  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc
Q 010976          249 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ  289 (496)
Q Consensus       249 ~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~  289 (496)
                      ..+++++|.+|..+|++          ++|+.++++++.+.
T Consensus         2 a~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRY----------EEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-H----------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhc----------chhhHHHHHHHHHH
Confidence            35789999999999999          99999999999863

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.39  E-value=8.5  Score=37.67  Aligned_cols=124  Identities=17%  Similarity=0.003  Sum_probs=83.5

Q ss_pred             HhhccHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHhc-CCCCCCCCCcchhhhHHHHHHHHHHHHHhC---
Q 010976          133 SRQRILTFAAKRYANAIERN-PEDY-------DALYNWALVLQESA-DNVSLDSTSPSKDALLEEACKKYDEATRLC---  200 (496)
Q Consensus       133 ~~~g~~~~Ai~~~~~al~~~-P~~~-------~a~~~lg~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~---  200 (496)
                      .++|+++.|..+|.++-... ..++       +.+|+.|......+ +              ++.|+..+++|+++.   
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~--------------~~~a~~wL~~a~~~l~~~   69 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDK--------------YEEAVKWLQRAYDILEKP   69 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCC--------------hHHHHHHHHHHHHHHHhh
Confidence            35789999999999987655 3333       45566666666666 6              999999999999882   


Q ss_pred             -C---CC-------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHH
Q 010976          201 -P---TL-------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAR  269 (496)
Q Consensus       201 -P---~~-------~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~  269 (496)
                       .   ..       ..++..++.+|..    .+.++.    +++|....+.+-...|+.+..+...=.++.+.++.    
T Consensus        70 ~~~~~~~~~~~elr~~iL~~La~~~l~----~~~~~~----~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~----  137 (278)
T PF08631_consen   70 GKMDKLSPDGSELRLSILRLLANAYLE----WDTYES----VEKALNALRLLESEYGNKPEVFLLKLEILLKSFDE----  137 (278)
T ss_pred             hhccccCCcHHHHHHHHHHHHHHHHHc----CCChHH----HHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCCh----
Confidence             1   11       2356667777776    666543    34455666666666787777775444555556776    


Q ss_pred             HhhhhHHHHHHHHHHHHHh
Q 010976          270 EKQTIVRTAISKFRAAIQL  288 (496)
Q Consensus       270 ~~~~~~~~Ai~~~~~Al~l  288 (496)
                            +++.+.+.+.+.-
T Consensus       138 ------~~~~~~L~~mi~~  150 (278)
T PF08631_consen  138 ------EEYEEILMRMIRS  150 (278)
T ss_pred             ------hHHHHHHHHHHHh
Confidence                  7777777777764

It is also involved in sporulation [].

>cd01241 PH_Akt Akt pleckstrin homology (PH) domain

Probab=93.10  E-value=0.12  Score=42.47  Aligned_cols=91  Identities=21%  Similarity=0.347  Sum_probs=50.8

Q ss_pred             hhccccCCCCCCCCCChhhhhhhccccchh-hhhhhc-cccccccccccCCCCCCCCCCCceeeeecCceeecccccCCC
Q 010976          365 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHE-GLQQAS-KNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT  442 (496)
Q Consensus       365 ~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (496)
                      +.|+|....     .....|+++||+|... .|..+. .+..                 .....+|+..+ .|..|.-..
T Consensus         3 k~G~L~K~g-----~~~~~Wk~R~f~L~~~~~l~~yk~~~~~-----------------~~~~~i~l~~~-~v~~~~~~~   59 (102)
T cd01241           3 KEGWLHKRG-----EYIKTWRPRYFLLKSDGSFIGYKEKPED-----------------GDPFLPPLNNF-SVAECQLMK   59 (102)
T ss_pred             EEEEEEeec-----CCCCCCeeEEEEEeCCCeEEEEecCCCc-----------------cCccccccCCe-EEeeeeeee
Confidence            356665542     2456899999999843 344322 1111                 01224555543 444444322


Q ss_pred             C--CCCCeeeEeecC-C-c--eeeeecChhhhhhHHHHHHHH
Q 010976          443 L--PPGAGLCIETIH-G-P--VFLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       443 ~--~~~~~~~~~~~~-~-~--~~~~~~~~~~~~~~~~a~~~~  478 (496)
                      +  +....|.|.+.+ . .  .++.|+|.++++.|..||+=|
T Consensus        60 ~~~~~~~~F~i~~~~~~~~~~r~f~a~s~ee~~eWi~ai~~v  101 (102)
T cd01241          60 TERPRPNTFIIRCLQWTTVIERTFHVESPEEREEWIHAIQTV  101 (102)
T ss_pred             ccCCCcceEEEEeccCCcccCEEEEeCCHHHHHHHHHHHHhh
Confidence            2  333466665211 1 1  255799999999999999754

Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=92.92  E-value=2  Score=43.77  Aligned_cols=85  Identities=16%  Similarity=0.062  Sum_probs=70.0

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCC--------CC----------HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHH
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNP--------ED----------YDALYNWALVLQESADNVSLDSTSPSKDALLEEAC  190 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P--------~~----------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~  190 (496)
                      +...+++++|..|+..|..+|++..        ..          ..+--.+..||..+++              .+-|+
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rk--------------pdlAL  248 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRK--------------PDLAL  248 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCC--------------CchHH
Confidence            4456678999999999999998752        11          1233467899999999              99999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010976          191 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW  231 (496)
Q Consensus       191 ~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~  231 (496)
                      .+..+.|.++|.+..-+...+.+...    +.+|.+|-.-+
T Consensus       249 nh~hrsI~lnP~~frnHLrqAavfR~----LeRy~eAarSa  285 (569)
T PF15015_consen  249 NHSHRSINLNPSYFRNHLRQAAVFRR----LERYSEAARSA  285 (569)
T ss_pred             HHHhhhhhcCcchhhHHHHHHHHHHH----HHHHHHHHHHH
Confidence            99999999999999999999999998    88888887433

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=92.80  E-value=8.8  Score=40.93  Aligned_cols=165  Identities=10%  Similarity=-0.017  Sum_probs=117.9

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 010976          134 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-CPTLHDAFYNWAI  212 (496)
Q Consensus       134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-~P~~~~a~~~lg~  212 (496)
                      ..|+++.....|++++--...+.+.|...+.-....|+              .+-|-..+.++.++ .|+.+..+...+.
T Consensus       309 ~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~--------------~~~~~~~~~~~~~i~~k~~~~i~L~~a~  374 (577)
T KOG1258|consen  309 TLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGD--------------VSLANNVLARACKIHVKKTPIIHLLEAR  374 (577)
T ss_pred             hcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCc--------------hhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence            35899999999999998888899999999999988888              88888888888887 6677777777776


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh---c
Q 010976          213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL---Q  289 (496)
Q Consensus       213 ~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l---~  289 (496)
                      .--.    .|++..|.       ..|++..+--|+...+-.........+|+.          +.+.. +...+..   .
T Consensus       375 f~e~----~~n~~~A~-------~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~----------~~~~~-~~~l~s~~~~~  432 (577)
T KOG1258|consen  375 FEES----NGNFDDAK-------VILQRIESEYPGLVEVVLRKINWERRKGNL----------EDANY-KNELYSSIYEG  432 (577)
T ss_pred             HHHh----hccHHHHH-------HHHHHHHhhCCchhhhHHHHHhHHHHhcch----------hhhhH-HHHHHHHhccc
Confidence            6666    88888888       788888877799988888888888888887          55553 2222222   1


Q ss_pred             CCCH----HHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Q 010976          290 FDFH----RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL  352 (496)
Q Consensus       290 P~~~----~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al  352 (496)
                      -.+.    ..+.+.....+...++                  -..|...+.++....|++..+...+
T Consensus       433 ~~~~~i~~~l~~~~~r~~~~i~~d------------------~~~a~~~l~~~~~~~~~~k~~~~~~  481 (577)
T KOG1258|consen  433 KENNGILEKLYVKFARLRYKIRED------------------ADLARIILLEANDILPDCKVLYLEL  481 (577)
T ss_pred             ccCcchhHHHHHHHHHHHHHHhcC------------------HHHHHHHHHHhhhcCCccHHHHHHH
Confidence            1222    2223333333222221                  3567777888999999888544433

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=92.80  E-value=2.2  Score=36.64  Aligned_cols=83  Identities=22%  Similarity=0.206  Sum_probs=67.7

Q ss_pred             CCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHH-hcCC-CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCc
Q 010976          247 NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ-LQFD-FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSP  324 (496)
Q Consensus       247 ~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~-l~P~-~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~  324 (496)
                      -..+..++++.++....+.       .+.++.+..++..++ -.|. .-+..|.|+..++++++                
T Consensus        30 ~s~~s~f~lAwaLV~S~~~-------~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlke----------------   86 (149)
T KOG3364|consen   30 VSKQSQFNLAWALVRSRDT-------EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKE----------------   86 (149)
T ss_pred             chHHHHHHHHHHHHcccch-------HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhh----------------
Confidence            3577889999999987765       567899999999997 4554 34688899999999999                


Q ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Q 010976          325 NELYSQSAIYIAAAHALKPSYSVYSSALRLV  355 (496)
Q Consensus       325 ~~~~~~A~~~~~~a~~l~p~~~~y~~al~~~  355 (496)
                         |..+..|....++.+|++......-..+
T Consensus        87 ---Y~~s~~yvd~ll~~e~~n~Qa~~Lk~~i  114 (149)
T KOG3364|consen   87 ---YSKSLRYVDALLETEPNNRQALELKETI  114 (149)
T ss_pred             ---HHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence               9999999999999999998655544433

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.54  E-value=1.2  Score=40.72  Aligned_cols=91  Identities=18%  Similarity=0.140  Sum_probs=68.2

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC-CHHH
Q 010976          131 GRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDA  206 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~-~~~a  206 (496)
                      .....+++++|+..++.++...-+.   .-+-.+|+.++.+++.              +++|++.+.....  ++ .+..
T Consensus        98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k--------------~D~AL~~L~t~~~--~~w~~~~  161 (207)
T COG2976          98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKK--------------ADAALKTLDTIKE--ESWAAIV  161 (207)
T ss_pred             HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhh--------------HHHHHHHHhcccc--ccHHHHH
Confidence            3455699999999999998654332   3456688999999999              9999988776532  22 2233


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010976          207 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS  248 (496)
Q Consensus       207 ~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~  248 (496)
                      .-.+|.++..    .|+-++|+       ..|.++++.++..
T Consensus       162 ~elrGDill~----kg~k~~Ar-------~ay~kAl~~~~s~  192 (207)
T COG2976         162 AELRGDILLA----KGDKQEAR-------AAYEKALESDASP  192 (207)
T ss_pred             HHHhhhHHHH----cCchHHHH-------HHHHHHHHccCCh
Confidence            5668999999    99999999       7888888776443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.48  E-value=2  Score=39.14  Aligned_cols=99  Identities=24%  Similarity=0.137  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010976          156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFYNWAIAISDRAKMRGRTKEAEELWK  232 (496)
Q Consensus       156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~  232 (496)
                      -.++..+|..|.+.|+              +++|+++|.++...+.+   ..+.++++-.+...    .+++........
T Consensus        36 r~~~~~l~~~~~~~Gd--------------~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~----~~d~~~v~~~i~   97 (177)
T PF10602_consen   36 RMALEDLADHYCKIGD--------------LEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF----FGDWSHVEKYIE   97 (177)
T ss_pred             HHHHHHHHHHHHHhhh--------------HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHH
Confidence            4678899999999999              99999999999887654   33566677777777    999999996666


Q ss_pred             HHHHHHHHHHhcCCCCHHH----HHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHH
Q 010976          233 QATKNYEKAVQLNWNSPQA----LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ  287 (496)
Q Consensus       233 ~A~~~~~~Al~l~P~~~~a----~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~  287 (496)
                      +|....++     ..+...    ...-|..+...++|          .+|-..|-.++.
T Consensus        98 ka~~~~~~-----~~d~~~~nrlk~~~gL~~l~~r~f----------~~AA~~fl~~~~  141 (177)
T PF10602_consen   98 KAESLIEK-----GGDWERRNRLKVYEGLANLAQRDF----------KEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHhc-----cchHHHHHHHHHHHHHHHHHhchH----------HHHHHHHHccCc
Confidence            66555554     222332    23345666667777          888888877653

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=92.44  E-value=12  Score=39.48  Aligned_cols=157  Identities=17%  Similarity=0.169  Sum_probs=88.3

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHcC
Q 010976          144 RYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDAFYNWAIAISDRAKMRG  222 (496)
Q Consensus       144 ~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~~~~~g  222 (496)
                      .|++++..-+-.++.|+..+..+...++.+...+........-+++..+|++++..--. +...++.++.--..++. -.
T Consensus       267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~-~n  345 (656)
T KOG1914|consen  267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYD-DN  345 (656)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcc-cc
Confidence            57777877888899999888877777765444455555555678899999999875322 33333333222111000 00


Q ss_pred             CHHHHHHHHHH----------------------------HHHHHHHHHhcCCCCHHHHHHHHHH-HHHccCcchHHHhhh
Q 010976          223 RTKEAEELWKQ----------------------------ATKNYEKAVQLNWNSPQALNNWGLA-LQELSAIVPAREKQT  273 (496)
Q Consensus       223 ~~~eA~~~~~~----------------------------A~~~~~~Al~l~P~~~~a~~~lg~~-l~~~g~~~~A~~~~~  273 (496)
                      +++.-.+.+++                            |...|.+|-+.--.....+..-|.+ |...++.        
T Consensus       346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~--------  417 (656)
T KOG1914|consen  346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDK--------  417 (656)
T ss_pred             hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCCh--------
Confidence            11111111111                            2233333332211111222111111 3334444        


Q ss_pred             hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHH
Q 010976          274 IVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL  311 (496)
Q Consensus       274 ~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~  311 (496)
                        .-|...|+--|+..++.+...+..-..+..++++..
T Consensus       418 --~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N  453 (656)
T KOG1914|consen  418 --ETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNN  453 (656)
T ss_pred             --hHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchh
Confidence              999999999999999999888888888888887543

>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain

Probab=92.33  E-value=0.17  Score=41.84  Aligned_cols=78  Identities=23%  Similarity=0.314  Sum_probs=54.4

Q ss_pred             hhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCC---CCCeeeEeecCCcee
Q 010976          383 DWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP---PGAGLCIETIHGPVF  459 (496)
Q Consensus       383 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  459 (496)
                      .|+|.+++||...+.-... +.               ...-.-.|||.+|.+|+.+....+|   +.+.|.|.| +-.||
T Consensus        15 ~rKRhYWrLDsK~Itlf~~-e~---------------~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T-~~~vY   77 (117)
T cd01239          15 RRKKHYWRLDSKAITLYQE-ES---------------GSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRT-TTNVY   77 (117)
T ss_pred             ceeeeEEEecCCeEEEEEc-CC---------------CCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEe-cCEEE
Confidence            5777888998776654322 11               1234779999999999988776543   777899998 66678


Q ss_pred             eeecC---------------------hhhhhhHHHHHHH
Q 010976          460 LVADS---------------------WEALDGWLDAIRL  477 (496)
Q Consensus       460 ~~~~~---------------------~~~~~~~~~a~~~  477 (496)
                      +|-.+                     .+.+..|-.||+.
T Consensus        78 ~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~q  116 (117)
T cd01239          78 FVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQ  116 (117)
T ss_pred             EecccccccCCCcccCCCCcccccchhHHHHHHHHHHhc
Confidence            88442                     2334779999985

Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=92.09  E-value=0.43  Score=46.42  Aligned_cols=62  Identities=18%  Similarity=0.183  Sum_probs=54.3

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 010976          234 ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG  305 (496)
Q Consensus       234 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~  305 (496)
                      |..+|.+|+.+.|++...|+.||.+....|+.          =.|+-+|-+++...--++.+..||..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~----------l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDD----------LDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-H----------HHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccch----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            45899999999999999999999999999998          999999999998876679999999999988

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.92  E-value=1.9  Score=42.02  Aligned_cols=75  Identities=17%  Similarity=0.149  Sum_probs=65.0

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010976          155 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA  234 (496)
Q Consensus       155 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A  234 (496)
                      ...++..++..+...++              ++.++..+++.+.++|.+-.+|..+-.+|..    .|+...|+..|++.
T Consensus       152 ~~~~l~~lae~~~~~~~--------------~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~----~g~~~~ai~~y~~l  213 (280)
T COG3629         152 FIKALTKLAEALIACGR--------------ADAVIEHLERLIELDPYDEPAYLRLMEAYLV----NGRQSAAIRAYRQL  213 (280)
T ss_pred             HHHHHHHHHHHHHhccc--------------HHHHHHHHHHHHhcCccchHHHHHHHHHHHH----cCCchHHHHHHHHH
Confidence            45677788888889999              9999999999999999999999999999999    99999999888777


Q ss_pred             HHHHHHHHhcCCC
Q 010976          235 TKNYEKAVQLNWN  247 (496)
Q Consensus       235 ~~~~~~Al~l~P~  247 (496)
                      ......-+..+|.
T Consensus       214 ~~~~~edlgi~P~  226 (280)
T COG3629         214 KKTLAEELGIDPA  226 (280)
T ss_pred             HHHhhhhcCCCcc
Confidence            7766666666664

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=91.59  E-value=7.6  Score=37.98  Aligned_cols=113  Identities=19%  Similarity=0.118  Sum_probs=78.0

Q ss_pred             hhHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHH---hcCCCC---
Q 010976          184 ALLEEACKKYDEATRLC----PTL----HDAFYNWAIAISDRAKMRG-RTKEAEELWKQATKNYEKAV---QLNWNS---  248 (496)
Q Consensus       184 ~~~~~A~~~~~~Al~l~----P~~----~~a~~~lg~~~~~~~~~~g-~~~eA~~~~~~A~~~~~~Al---~l~P~~---  248 (496)
                      |+++.|..+|.|+-.+.    |+.    +..+|+.|..+..    .+ ++++|...+++|.+.+++.-   ...|+.   
T Consensus         7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~----~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS----KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            33999999999987764    332    3567888888888    89 99999999999999987643   333332   


Q ss_pred             -HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976          249 -PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  307 (496)
Q Consensus       249 -~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g  307 (496)
                       ..++..++.+|...+.+       ..+++|+...+.+-.-.|+.+..+...-.++...+
T Consensus        83 r~~iL~~La~~~l~~~~~-------~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~  135 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTY-------ESVEKALNALRLLESEYGNKPEVFLLKLEILLKSF  135 (278)
T ss_pred             HHHHHHHHHHHHHcCCCh-------HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccC
Confidence             34677788888888775       23345666666665666877776644444444433

It is also involved in sporulation [].

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.55  E-value=1.3  Score=34.23  Aligned_cols=46  Identities=15%  Similarity=0.104  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ  250 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~  250 (496)
                      -..|+.+..+|++.+               .    .|++++|+.+|.+|++.|..++...|+...
T Consensus         3 ~~~a~~l~~~Ave~D---------------~----~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~   48 (77)
T cd02683           3 ELAAKEVLKRAVELD---------------Q----EGRFQEALVCYQEGIDLLMQVLKGTKDEAK   48 (77)
T ss_pred             hHHHHHHHHHHHHHH---------------H----hccHHHHHHHHHHHHHHHHHHHhhCCCHHH
Confidence            445666666665543               3    999999999999999999999999986544

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=91.28  E-value=0.88  Score=46.90  Aligned_cols=125  Identities=10%  Similarity=0.089  Sum_probs=84.8

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  214 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~  214 (496)
                      .|++-.|-.....+++..|.++......+.+...+|+              |+.+...+.-+=.+-.....+...+-..+
T Consensus       302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~--------------ye~~~~~~s~~~~~~~s~~~~~~~~~r~~  367 (831)
T PRK15180        302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGY--------------YEQAYQDISDVEKIIGTTDSTLRCRLRSL  367 (831)
T ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhh--------------HHHHHHHhhchhhhhcCCchHHHHHHHhh
Confidence            4788888888889999999999988899999999999              99988887666554333333444444445


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHH
Q 010976          215 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR  294 (496)
Q Consensus       215 ~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~  294 (496)
                      ..    +|++++|.       ..-...+.-.-.+++...--+..--.+|-          ++++...+++.+.++|....
T Consensus       368 ~~----l~r~~~a~-------s~a~~~l~~eie~~ei~~iaa~sa~~l~~----------~d~~~~~wk~~~~~~~~~~~  426 (831)
T PRK15180        368 HG----LARWREAL-------STAEMMLSNEIEDEEVLTVAAGSADALQL----------FDKSYHYWKRVLLLNPETQS  426 (831)
T ss_pred             hc----hhhHHHHH-------HHHHHHhccccCChhheeeecccHHHHhH----------HHHHHHHHHHHhccCChhcc
Confidence            55    78888877       44444444443444444333333333344          49999999999998875443

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=91.22  E-value=0.34  Score=47.22  Aligned_cols=90  Identities=9%  Similarity=0.018  Sum_probs=70.2

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHccCcchH
Q 010976          190 CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN-WGLALQELSAIVPA  268 (496)
Q Consensus       190 ~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~-lg~~l~~~g~~~~A  268 (496)
                      +-.|.++....|+++..|...+.....    .|-+.+--       ..|.++++.+|.+++.|.. -+.-+...+++   
T Consensus        93 ~f~~~R~tnkff~D~k~w~~y~~Y~~k----~k~y~~~~-------nI~~~~l~khP~nvdlWI~~c~~e~~~~ani---  158 (435)
T COG5191          93 IFELYRSTNKFFNDPKIWSQYAAYVIK----KKMYGEMK-------NIFAECLTKHPLNVDLWIYCCAFELFEIANI---  158 (435)
T ss_pred             eEeeehhhhcCCCCcHHHHHHHHHHHH----HHHHHHHH-------HHHHHHHhcCCCCceeeeeeccchhhhhccH---
Confidence            335666777788999988887655555    44444444       8999999999999999876 55567777777   


Q ss_pred             HHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010976          269 REKQTIVRTAISKFRAAIQLQFDFHRAIYNLG  300 (496)
Q Consensus       269 ~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg  300 (496)
                             +.+.+.|.++|+++|+++.+|+..-
T Consensus       159 -------~s~Ra~f~~glR~N~~~p~iw~eyf  183 (435)
T COG5191         159 -------ESSRAMFLKGLRMNSRSPRIWIEYF  183 (435)
T ss_pred             -------HHHHHHHHhhhccCCCCchHHHHHH
Confidence                   9999999999999999998887543

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.88  E-value=9.6  Score=40.52  Aligned_cols=114  Identities=18%  Similarity=0.134  Sum_probs=86.2

Q ss_pred             chhhhHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC---
Q 010976          181 SKDALLEEACKKYDEATRL------------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN---  245 (496)
Q Consensus       181 ~~~~~~~~A~~~~~~Al~l------------~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~---  245 (496)
                      .+..-|++|...|.-|+..            .|.+.+.+..++.+...    +|+.+-|....++++-.+++++.-.   
T Consensus       249 ~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~----qgD~e~aadLieR~Ly~~d~a~hp~F~~  324 (665)
T KOG2422|consen  249 EHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRF----QGDREMAADLIERGLYVFDRALHPNFIP  324 (665)
T ss_pred             ecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHH----hcchhhHHHHHHHHHHHHHHHhcccccc
Confidence            4566799999999888776            56678889999999988    9999999999999999999988432   


Q ss_pred             -----------CCCH---HHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcch
Q 010976          246 -----------WNSP---QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-FHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       246 -----------P~~~---~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~  308 (496)
                                 |.|-   -+++..-..+.+.|-+          ..|.++++-.++++|. ++-+...+-.+|.-..+
T Consensus       325 ~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~----------rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrar  392 (665)
T KOG2422|consen  325 FSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW----------RTALEWCKLLLSLDPSEDPLGILYLIDIYALRAR  392 (665)
T ss_pred             ccccccCcccchhhHHHHHHHHHHHHHHHhcCCh----------HHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHH
Confidence                       2221   1233333344444555          9999999999999998 88777766666665554

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=90.77  E-value=1.1  Score=51.67  Aligned_cols=109  Identities=20%  Similarity=0.203  Sum_probs=89.2

Q ss_pred             HHHHHH------HHH-HHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Q 010976          186 LEEACK------KYD-EATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGL  257 (496)
Q Consensus       186 ~~~A~~------~~~-~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~-P~~~~a~~~lg~  257 (496)
                      +.+|.+      .+. ..-.+.|.....|..|+.++..    +|++++|+..-++|.-.+++.+.++ |+....+.+++.
T Consensus       948 ~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~----~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal 1023 (1236)
T KOG1839|consen  948 FSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNR----LGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLAL 1023 (1236)
T ss_pred             hhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhh----hcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHH
Confidence            665655      555 3334588899999999999999    9999999988888888888888887 556788999999


Q ss_pred             HHHHccCcchHHHhhhhHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcch
Q 010976          258 ALQELSAIVPAREKQTIVRTAISKFRAAIQL--------QFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       258 ~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~  308 (496)
                      ..+..++.          ..|...+.++..+        .|.-.....|++.++...++
T Consensus      1024 ~~f~~~~~----------~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e 1072 (1236)
T KOG1839|consen 1024 YEFAVKNL----------SGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEE 1072 (1236)
T ss_pred             HHHhccCc----------cchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHH
Confidence            98888888          8899988888876        45556677889999888887

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.62  E-value=7  Score=40.70  Aligned_cols=124  Identities=15%  Similarity=0.154  Sum_probs=83.6

Q ss_pred             hccHHHHHHHHHHHHHhCCC-CHH--HHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHH-hCCCC-------
Q 010976          135 QRILTFAAKRYANAIERNPE-DYD--ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-LCPTL-------  203 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~-~~~--a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-l~P~~-------  203 (496)
                      .+.++.|...|..|+++--. +..  +..++|.+|...++              -+    .+.++++ +.|.+       
T Consensus       380 v~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~--------------~e----d~y~~ld~i~p~nt~s~ssq  441 (629)
T KOG2300|consen  380 VNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGD--------------AE----DLYKALDLIGPLNTNSLSSQ  441 (629)
T ss_pred             cchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhcc--------------HH----HHHHHHHhcCCCCCCcchHH
Confidence            48899999999999987533 333  44578999999888              33    2333333 34442       


Q ss_pred             ---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHccCcchHHHhhhh
Q 010976          204 ---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW------NSPQALNNWGLALQELSAIVPAREKQTI  274 (496)
Q Consensus       204 ---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P------~~~~a~~~lg~~l~~~g~~~~A~~~~~~  274 (496)
                         ..++|..|...+.    ++++.||.       ...++.++..-      -....+..||.+..-.|+.         
T Consensus       442 ~l~a~~~~v~glfaf~----qn~lnEaK-------~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~---------  501 (629)
T KOG2300|consen  442 RLEASILYVYGLFAFK----QNDLNEAK-------RFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNT---------  501 (629)
T ss_pred             HHHHHHHHHHHHHHHH----hccHHHHH-------HHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcch---------
Confidence               2356666666666    99999999       66666666541      1233456678888888888         


Q ss_pred             HHHHHHHHHHHHHhc---CCCHHHHH
Q 010976          275 VRTAISKFRAAIQLQ---FDFHRAIY  297 (496)
Q Consensus       275 ~~~Ai~~~~~Al~l~---P~~~~a~~  297 (496)
                       .++....+-++.+.   |+.+..+.
T Consensus       502 -~es~nmvrpamqlAkKi~Di~vqLw  526 (629)
T KOG2300|consen  502 -VESRNMVRPAMQLAKKIPDIPVQLW  526 (629)
T ss_pred             -HHHHhccchHHHHHhcCCCchHHHH
Confidence             88888888888774   55544433

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=90.54  E-value=0.94  Score=44.01  Aligned_cols=62  Identities=23%  Similarity=0.306  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010976          189 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE  261 (496)
Q Consensus       189 A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~  261 (496)
                      |+.+|.+|+.+.|++...|+++|.++..    .|+.-.|+       -+|-+++-..--++.+..||..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~----~~~~l~av-------y~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASY----QGDDLDAV-------YYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHH----TT-HHHHH-------HHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhcc----ccchHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            6889999999999999999999999999    99999998       78888886654468899999999888

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.45  E-value=4.7  Score=43.25  Aligned_cols=102  Identities=11%  Similarity=0.061  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHH
Q 010976          114 NNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED------YDALYNWALVLQESADNVSLDSTSPSKDALLE  187 (496)
Q Consensus       114 ~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~~------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~  187 (496)
                      ..+++.++..++=..+...++..+|..+++.|...+..-|.|      +....+++.+|..+.+              ++
T Consensus       346 TkE~~~~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~Q--------------LD  411 (872)
T KOG4814|consen  346 TKEAISCIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQ--------------LD  411 (872)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHH--------------HH
Confidence            445555666555555566777899999999999999987765      4567789999999999              99


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010976          188 EACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ  233 (496)
Q Consensus       188 ~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~  233 (496)
                      .|.+++++|=+.+|.++-..+..-.+...    .|.-.+|+.+...
T Consensus       412 ~A~E~~~EAE~~d~~~~l~q~~~~~~~~~----E~~Se~AL~~~~~  453 (872)
T KOG4814|consen  412 NAVEVYQEAEEVDRQSPLCQLLMLQSFLA----EDKSEEALTCLQK  453 (872)
T ss_pred             HHHHHHHHHHhhccccHHHHHHHHHHHHH----hcchHHHHHHHHH
Confidence            99999999999999998877777666666    8888888855543

>cd00821 PH Pleckstrin homology (PH) domain

Probab=90.44  E-value=0.44  Score=37.03  Aligned_cols=81  Identities=25%  Similarity=0.313  Sum_probs=51.4

Q ss_pred             hhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecC-Cceee
Q 010976          382 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIH-GPVFL  460 (496)
Q Consensus       382 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  460 (496)
                      ..|.+++++|....+.-........             .......|++.+ ..+....+.. ...++|.|.+.+ ...+|
T Consensus        14 ~~w~~~~~~L~~~~l~~~~~~~~~~-------------~~~~~~~i~l~~-~~v~~~~~~~-~~~~~f~i~~~~~~~~~~   78 (96)
T cd00821          14 KGWKRRWFVLFNDLLLYYKKKSSKK-------------SYKPKGSIPLSG-AEVEESPDDS-GRKNCFEIRTPDGRSYLL   78 (96)
T ss_pred             CCccEEEEEEECCEEEEEECCCCCc-------------CCCCcceEEcCC-CEEEECCCcC-CCCcEEEEecCCCcEEEE
Confidence            5799999999766655533222110             123345666665 3333332222 345778887766 45689


Q ss_pred             eecChhhhhhHHHHHHH
Q 010976          461 VADSWEALDGWLDAIRL  477 (496)
Q Consensus       461 ~~~~~~~~~~~~~a~~~  477 (496)
                      .+.|.+++..|.++|+.
T Consensus        79 ~~~s~~~~~~W~~~l~~   95 (96)
T cd00821          79 QAESEEEREEWIEALQS   95 (96)
T ss_pred             EeCCHHHHHHHHHHHhc
Confidence            99999999999999974

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=90.35  E-value=0.55  Score=45.83  Aligned_cols=86  Identities=13%  Similarity=0.120  Sum_probs=70.7

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHHcC
Q 010976          144 RYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN-WAIAISDRAKMRG  222 (496)
Q Consensus       144 ~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~-lg~~~~~~~~~~g  222 (496)
                      .|.++....|+++..|...+......+.              +.+--..|.++++.+|.+.+.|.. -+.-+..    .+
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~--------------y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~----~a  156 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVIKKKM--------------YGEMKNIFAECLTKHPLNVDLWIYCCAFELFE----IA  156 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhcCCCCceeeeeeccchhhh----hc
Confidence            4555666779999999999888888888              999999999999999999999876 2333444    77


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010976          223 RTKEAEELWKQATKNYEKAVQLNWNSPQALNN  254 (496)
Q Consensus       223 ~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~  254 (496)
                      +++.+.       ..|.+++.+||.++..|..
T Consensus       157 ni~s~R-------a~f~~glR~N~~~p~iw~e  181 (435)
T COG5191         157 NIESSR-------AMFLKGLRMNSRSPRIWIE  181 (435)
T ss_pred             cHHHHH-------HHHHhhhccCCCCchHHHH
Confidence            888877       8999999999999887653

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain

Probab=90.09  E-value=0.6  Score=38.26  Aligned_cols=84  Identities=13%  Similarity=0.202  Sum_probs=48.7

Q ss_pred             ChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCce-
Q 010976          380 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-  458 (496)
Q Consensus       380 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  458 (496)
                      ....|.+++++|....|.-+.......     ...       .....|++. .+.++.+.+.+ -+.++|.|.+.+|.+ 
T Consensus        19 ~~~~Wk~r~~vL~~~~L~~ykd~~~~~-----~~~-------~~~~~i~l~-~~~i~~~~~~~-k~~~~F~l~~~~~~~~   84 (104)
T cd01253          19 SNRSWDNVYGVLCGQSLSFYKDEKMAA-----ENV-------HGEPPVDLT-GAQCEVASDYT-KKKHVFRLRLPDGAEF   84 (104)
T ss_pred             CCCCcceEEEEEeCCEEEEEecCcccc-----cCC-------CCCCcEecc-CCEEEecCCcc-cCceEEEEEecCCCEE
Confidence            356899999999866554433221100     000       011123333 23333333322 234788887667655 


Q ss_pred             eeeecChhhhhhHHHHHHH
Q 010976          459 FLVADSWEALDGWLDAIRL  477 (496)
Q Consensus       459 ~~~~~~~~~~~~~~~a~~~  477 (496)
                      +|-|+|.+++..|+.||+-
T Consensus        85 ~f~a~s~e~~~~Wi~aL~~  103 (104)
T cd01253          85 LFQAPDEEEMSSWVRALKS  103 (104)
T ss_pred             EEECCCHHHHHHHHHHHhc
Confidence            7779999999999999963

Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.88  E-value=2.4  Score=32.50  Aligned_cols=44  Identities=23%  Similarity=0.291  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS  248 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~  248 (496)
                      ++.|+.++.+|+..+               .    .|++++|+.+|.+|++.|..++...|+.
T Consensus         3 ~~~A~~l~~~Av~~D---------------~----~g~y~eA~~~Y~~aie~l~~~~k~e~~~   46 (75)
T cd02678           3 LQKAIELVKKAIEED---------------N----AGNYEEALRLYQHALEYFMHALKYEKNP   46 (75)
T ss_pred             HHHHHHHHHHHHHHH---------------H----cCCHHHHHHHHHHHHHHHHHHHhhCCCH
Confidence            567777777776543               3    9999999999999999999999998853

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=89.77  E-value=7.3  Score=42.28  Aligned_cols=104  Identities=20%  Similarity=0.105  Sum_probs=64.7

Q ss_pred             hhhcHHHHHHHHHHhhccc--hhhhHhhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhh
Q 010976          110 LAEQNNAAMELINSVTGVD--EEGRSRQRILTFAAKRYANAIERN--PEDYDALYNWALVLQESADNVSLDSTSPSKDAL  185 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~l~~~--~~~~~~~g~~~~Ai~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~  185 (496)
                      ..|++++|..+|..+-..+  -.-+.+.|+|-.-.++++.--.-+  ..--+++.++|..+..+..              
T Consensus       746 ~~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~--------------  811 (1189)
T KOG2041|consen  746 FYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMME--------------  811 (1189)
T ss_pred             hhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHH--------------
Confidence            4577777777665544333  112333455554444443311111  1124688888888888888              


Q ss_pred             HHHHHHHHHHHH----------------------HhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010976          186 LEEACKKYDEAT----------------------RLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW  231 (496)
Q Consensus       186 ~~~A~~~~~~Al----------------------~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~  231 (496)
                      +++|.++|.+.-                      .--|++...+-.+|.++..    .|.-++|.+.|
T Consensus       812 We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~s----vGMC~qAV~a~  875 (1189)
T KOG2041|consen  812 WEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTS----VGMCDQAVEAY  875 (1189)
T ss_pred             HHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHh----hchHHHHHHHH
Confidence            888888877642                      1247777777788888888    88888888766

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=89.69  E-value=27  Score=37.01  Aligned_cols=69  Identities=17%  Similarity=0.248  Sum_probs=57.5

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHH
Q 010976          146 ANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK  225 (496)
Q Consensus       146 ~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~  225 (496)
                      ++-|+.||.|.++|+.|-.-+..+ .              +++..+.|++.+...|..+.+|.........    ..+|+
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~--------------~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~----skdfe   70 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-P--------------IDKVRETYEQLVNVFPSSPRAWKLYIERELA----SKDFE   70 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-C--------------HHHHHHHHHHHhccCCCCcHHHHHHHHHHHH----hhhHH
Confidence            677899999999999988877766 6              9999999999999999999999877766666    67777


Q ss_pred             HHHHHHHH
Q 010976          226 EAEELWKQ  233 (496)
Q Consensus       226 eA~~~~~~  233 (496)
                      .-.++|.+
T Consensus        71 ~VEkLF~R   78 (656)
T KOG1914|consen   71 SVEKLFSR   78 (656)
T ss_pred             HHHHHHHH
Confidence            76655544

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=89.58  E-value=10  Score=33.27  Aligned_cols=69  Identities=17%  Similarity=0.088  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      +.++...+...--+.|+.+..-..-|.++..    .|++.+|+       ..++...+-.+..+.+.-.++.|+.-+|+.
T Consensus        26 ~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~----rg~w~eA~-------rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        26 PYDAQAMLDALRVLRPNLKELDMFDGWLLIA----RGNYDEAA-------RILRELLSSAGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             HHHHHHHHHHHHHhCCCccccchhHHHHHHH----cCCHHHHH-------HHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence            9999999999999999999999999999999    99999999       888888888888898999999999999985

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=89.49  E-value=1.6  Score=35.05  Aligned_cols=59  Identities=17%  Similarity=0.120  Sum_probs=44.7

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc
Q 010976          221 RGRTKEAEELWKQATKNYEKAVQLN--WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ  289 (496)
Q Consensus       221 ~g~~~eA~~~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~  289 (496)
                      .|++.+|++.+.+..+.........  -....++.++|.++...|++          ++|+..+++|+++-
T Consensus        11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~----------~~A~~~l~eAi~~A   71 (94)
T PF12862_consen   11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHY----------EEALQALEEAIRLA   71 (94)
T ss_pred             cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHH
Confidence            8999999977776655544332221  02356788999999999999          99999999999874

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=89.42  E-value=8.6  Score=33.72  Aligned_cols=71  Identities=13%  Similarity=-0.074  Sum_probs=64.4

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010976          221 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG  300 (496)
Q Consensus       221 ~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg  300 (496)
                      .++++++.       ..+...--+.|+.+..-..-|.++...|++          .+|+..|+...+-.+..+.+.-.++
T Consensus        23 ~~d~~D~e-------~lLdALrvLrP~~~e~d~~dg~l~i~rg~w----------~eA~rvlr~l~~~~~~~p~~kAL~A   85 (153)
T TIGR02561        23 SADPYDAQ-------AMLDALRVLRPNLKELDMFDGWLLIARGNY----------DEAARILRELLSSAGAPPYGKALLA   85 (153)
T ss_pred             cCCHHHHH-------HHHHHHHHhCCCccccchhHHHHHHHcCCH----------HHHHHHHHhhhccCCCchHHHHHHH
Confidence            77788877       677766678999999999999999999999          9999999999999999999999999


Q ss_pred             HHHHHcch
Q 010976          301 TVLYGLAE  308 (496)
Q Consensus       301 ~~~~~~g~  308 (496)
                      .|++-+|+
T Consensus        86 ~CL~al~D   93 (153)
T TIGR02561        86 LCLNAKGD   93 (153)
T ss_pred             HHHHhcCC
Confidence            99999997

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=89.31  E-value=1.4  Score=42.75  Aligned_cols=72  Identities=14%  Similarity=0.047  Sum_probs=60.5

Q ss_pred             hhcHHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHH
Q 010976          111 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEAC  190 (496)
Q Consensus       111 ~~~~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~  190 (496)
                      -+..+-+..+|.+.++.....+...|.+.+|+.+.++++.++|-+...+..+-.+|..+|+              --.++
T Consensus       268 edererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD--------------~is~~  333 (361)
T COG3947         268 EDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD--------------EISAI  333 (361)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc--------------chhhh
Confidence            3455566677888888888888888999999999999999999999999999999999999              55566


Q ss_pred             HHHHHH
Q 010976          191 KKYDEA  196 (496)
Q Consensus       191 ~~~~~A  196 (496)
                      +.|++.
T Consensus       334 khyery  339 (361)
T COG3947         334 KHYERY  339 (361)
T ss_pred             hHHHHH
Confidence            666554

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=89.15  E-value=12  Score=40.93  Aligned_cols=64  Identities=14%  Similarity=0.027  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHccCcchHHH---hhhhHHHHHHHHHHH------HH----hcCCC-HHHHHHHHHHHHHcchhHHh
Q 010976          249 PQALNNWGLALQELSAIVPARE---KQTIVRTAISKFRAA------IQ----LQFDF-HRAIYNLGTVLYGLAEDTLR  312 (496)
Q Consensus       249 ~~a~~~lg~~l~~~g~~~~A~~---~~~~~~~Ai~~~~~A------l~----l~P~~-~~a~~~lg~~~~~~g~~~~a  312 (496)
                      ...|...+.-+-+.|++.+|.+   ..|..+.||..|.+.      ++    ..|+. .+.+..+|.-|-..|+...+
T Consensus       824 ~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaa  901 (1636)
T KOG3616|consen  824 ISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAA  901 (1636)
T ss_pred             HHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHH
Confidence            3455666777888888877733   556667777777663      22    23333 35566677777777764433

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=89.15  E-value=2.9  Score=40.37  Aligned_cols=63  Identities=17%  Similarity=0.106  Sum_probs=56.1

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010976          221 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG  300 (496)
Q Consensus       221 ~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg  300 (496)
                      .++++.|.       .+-++.+.++|.++.-+.-.|.+|.++|.+          .-|+..+...++.-|+.+.+-.-..
T Consensus       194 e~~~~~al-------~~~~r~l~l~P~dp~eirDrGliY~ql~c~----------~vAl~dl~~~~~~~P~~~~a~~ir~  256 (269)
T COG2912         194 ELQWELAL-------RVAERLLDLNPEDPYEIRDRGLIYAQLGCY----------HVALEDLSYFVEHCPDDPIAEMIRA  256 (269)
T ss_pred             hhchHHHH-------HHHHHHHhhCCCChhhccCcHHHHHhcCCc----------hhhHHHHHHHHHhCCCchHHHHHHH
Confidence            77777777       899999999999999999999999999999          9999999999999999887654433

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=89.08  E-value=16  Score=37.94  Aligned_cols=118  Identities=15%  Similarity=-0.016  Sum_probs=76.8

Q ss_pred             hhHhhcc-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHH--HHHHHHHh--------
Q 010976          131 GRSRQRI-LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACK--KYDEATRL--------  199 (496)
Q Consensus       131 ~~~~~g~-~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~--~~~~Al~l--------  199 (496)
                      .+.+.|. -++|+..++.+++..|.+....+..-.. .+ ..              |.+|+.  .+.+.+.+        
T Consensus       388 ~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~f-vK-q~--------------Y~qaLs~~~~~rLlkLe~fi~e~g  451 (549)
T PF07079_consen  388 HLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLF-VK-QA--------------YKQALSMHAIPRLLKLEDFITEVG  451 (549)
T ss_pred             HHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHH-HH-HH--------------HHHHHhhhhHHHHHHHHHHHHhcC
Confidence            3445555 7899999999999999987554322111 11 11              444332  22222222        


Q ss_pred             -CC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhH
Q 010976          200 -CP---TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV  275 (496)
Q Consensus       200 -~P---~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~  275 (496)
                       -|   .+.+.-+.|+.+-+-  +.+|+|.++.       -+..-..++.| ++.++..+|.++....+|          
T Consensus       452 l~~i~i~e~eian~LaDAEyL--ysqgey~kc~-------~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y----------  511 (549)
T PF07079_consen  452 LTPITISEEEIANFLADAEYL--YSQGEYHKCY-------LYSSWLTKIAP-SPQAYRLLGLCLMENKRY----------  511 (549)
T ss_pred             CCcccccHHHHHHHHHHHHHH--HhcccHHHHH-------HHHHHHHHhCC-cHHHHHHHHHHHHHHhhH----------
Confidence             22   244445555544221  2388888888       56666778999 999999999999999999          


Q ss_pred             HHHHHHHHH
Q 010976          276 RTAISKFRA  284 (496)
Q Consensus       276 ~~Ai~~~~~  284 (496)
                      ++|..++..
T Consensus       512 ~eA~~~l~~  520 (549)
T PF07079_consen  512 QEAWEYLQK  520 (549)
T ss_pred             HHHHHHHHh
Confidence            999888765

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=89.05  E-value=26  Score=34.90  Aligned_cols=107  Identities=19%  Similarity=0.081  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh----cC------------CCCH
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ----LN------------WNSP  249 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~----l~------------P~~~  249 (496)
                      ..+-|+.-..|+++||..+.+|..|+.--      .--..+|.+.|++|++.-+....    +.            ..+.
T Consensus       200 p~~RI~~A~~ALeIN~eCA~AyvLLAEEE------a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnv  273 (556)
T KOG3807|consen  200 PPARIKAAYQALEINNECATAYVLLAEEE------ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNV  273 (556)
T ss_pred             cHHHHHHHHHHHhcCchhhhHHHhhhhhh------hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccch
Confidence            77788889999999999999998877543      33456777777776654333322    11            1122


Q ss_pred             H--HHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcch
Q 010976          250 Q--ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF--HRAIYNLGTVLYGLAE  308 (496)
Q Consensus       250 ~--a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~--~~a~~~lg~~~~~~g~  308 (496)
                      .  ....|+.|-.++|+.          .+|++.|+...+-.|-.  -.++-||-.++..+.-
T Consensus       274 l~YIKRRLAMCARklGrl----------rEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QA  326 (556)
T KOG3807|consen  274 LVYIKRRLAMCARKLGRL----------REAVKIMRDLMKEFPLLTMLNIHENLLEALLELQA  326 (556)
T ss_pred             hhHHHHHHHHHHHHhhhH----------HHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence            2  234566666667776          99999999988777632  2456677666666654

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=88.97  E-value=15  Score=39.17  Aligned_cols=162  Identities=7%  Similarity=0.017  Sum_probs=119.8

Q ss_pred             cHHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHhcCCCCCCCCCcchhh
Q 010976          113 QNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIER-----NPE---DYDALYNWALVLQESADNVSLDSTSPSKDA  184 (496)
Q Consensus       113 ~~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~-----~P~---~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~  184 (496)
                      .++.+.....+........+.......+.+..|+..++.     +|.   +...|......-...|+             
T Consensus       246 ~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~-------------  312 (577)
T KOG1258|consen  246 SLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGD-------------  312 (577)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhccc-------------
Confidence            334444444455544444444445566667777777653     233   34556666666677787             


Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Q 010976          185 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGLALQELS  263 (496)
Q Consensus       185 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g  263 (496)
                       ++...-.|++++--+..+...|.+.+.-+..    .|+.+-|.       ..+.++.+.. |..+..+...+..-...|
T Consensus       313 -~~~~~~l~ercli~cA~Y~efWiky~~~m~~----~~~~~~~~-------~~~~~~~~i~~k~~~~i~L~~a~f~e~~~  380 (577)
T KOG1258|consen  313 -FSRVFILFERCLIPCALYDEFWIKYARWMES----SGDVSLAN-------NVLARACKIHVKKTPIIHLLEARFEESNG  380 (577)
T ss_pred             -HHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH----cCchhHHH-------HHHHhhhhhcCCCCcHHHHHHHHHHHhhc
Confidence             9999999999999999999999999999988    89988888       5566665554 677888888888888888


Q ss_pred             CcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010976          264 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED  309 (496)
Q Consensus       264 ~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~  309 (496)
                      ++          ..|...|++..+--|+...+-.........+|+.
T Consensus       381 n~----------~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~  416 (577)
T KOG1258|consen  381 NF----------DDAKVILQRIESEYPGLVEVVLRKINWERRKGNL  416 (577)
T ss_pred             cH----------HHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcch
Confidence            88          9999999999988899888777767777777753

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.92  E-value=3.4  Score=31.88  Aligned_cols=40  Identities=23%  Similarity=0.105  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC
Q 010976          187 EEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN  245 (496)
Q Consensus       187 ~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~  245 (496)
                      ..|+++..+|++.|               .    .|++.+|+.+|.+|++.|..++...
T Consensus         4 ~~Ai~~a~~Ave~D---------------~----~g~y~eA~~~Y~~aie~l~~~~~~~   43 (76)
T cd02681           4 RDAVQFARLAVQRD---------------Q----EGRYSEAVFYYKEAAQLLIYAEMAG   43 (76)
T ss_pred             HHHHHHHHHHHHHH---------------H----ccCHHHHHHHHHHHHHHHHHHHHhc
Confidence            45677777777654               3    9999999999999999999987555

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain

Probab=88.83  E-value=0.72  Score=39.12  Aligned_cols=88  Identities=17%  Similarity=0.200  Sum_probs=51.0

Q ss_pred             hhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecC---ceeecccccCCCCCCCCeeeEeecCCc
Q 010976          381 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVP---DIVSVSACADLTLPPGAGLCIETIHGP  457 (496)
Q Consensus       381 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (496)
                      ...|.++||+|.+..|-.+..+....       ..|...- +....|...   ++...+..-+. -+..++|+|.|..=.
T Consensus        30 ~~~w~kRWFvlr~s~L~Y~~~~~~~~-------~~~vil~-D~~f~v~~~~~~~~~~~~~~~~~-~~~~~~~~i~t~~R~  100 (121)
T cd01254          30 CDRWQKRWFIVKESFLAYMDDPSSAQ-------ILDVILF-DVDFKVNGGGKEDISLAVELKDI-TGLRHGLKITNSNRS  100 (121)
T ss_pred             ccCCcceeEEEeCCEEEEEcCCCCCc-------eeeEEEE-cCCccEEeCCccccccccccccc-CCCceEEEEEcCCcE
Confidence            34799999999988887766555411       0000000 000000000   00000111111 356789999877666


Q ss_pred             eeeeecChhhhhhHHHHHHH
Q 010976          458 VFLVADSWEALDGWLDAIRL  477 (496)
Q Consensus       458 ~~~~~~~~~~~~~~~~a~~~  477 (496)
                      ..|.|+|.+.+.+|.++|..
T Consensus       101 ~~l~a~s~~~~~~Wi~~i~~  120 (121)
T cd01254         101 LKLKCKSSRKLKQWMASIED  120 (121)
T ss_pred             EEEEeCCHHHHHHHHHHHHh
Confidence            79999999999999999974

Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.81  E-value=4.8  Score=43.15  Aligned_cols=82  Identities=9%  Similarity=-0.015  Sum_probs=67.3

Q ss_pred             hHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010976          185 LLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA  258 (496)
Q Consensus       185 ~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  258 (496)
                      +|..+++.|...+..-|++      +....++..||..    +.+.+.|.       ++|++|=+.+|.++-....+-.+
T Consensus       369 ~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~----L~QLD~A~-------E~~~EAE~~d~~~~l~q~~~~~~  437 (872)
T KOG4814|consen  369 KYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK----LEQLDNAV-------EVYQEAEEVDRQSPLCQLLMLQS  437 (872)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh----HHHHHHHH-------HHHHHHHhhccccHHHHHHHHHH
Confidence            3999999999999987764      4567889999988    77777777       89999999999999999988888


Q ss_pred             HHHccCcchHHHhhhhHHHHHHHHHHHHH
Q 010976          259 LQELSAIVPAREKQTIVRTAISKFRAAIQ  287 (496)
Q Consensus       259 l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~  287 (496)
                      ....|..          .+|+.+......
T Consensus       438 ~~~E~~S----------e~AL~~~~~~~s  456 (872)
T KOG4814|consen  438 FLAEDKS----------EEALTCLQKIKS  456 (872)
T ss_pred             HHHhcch----------HHHHHHHHHHHh
Confidence            8888998          666666555544

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=88.69  E-value=1  Score=33.83  Aligned_cols=27  Identities=33%  Similarity=0.390  Sum_probs=25.4

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010976          221 RGRTKEAEELWKQATKNYEKAVQLNWN  247 (496)
Q Consensus       221 ~g~~~eA~~~~~~A~~~~~~Al~l~P~  247 (496)
                      .|++++|+.+|.+|+..+..++...++
T Consensus        18 ~g~~~~A~~~Y~~ai~~l~~~~~~~~~   44 (69)
T PF04212_consen   18 AGNYEEALELYKEAIEYLMQALKSESN   44 (69)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence            999999999999999999999998864

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=88.64  E-value=4.2  Score=47.08  Aligned_cols=123  Identities=17%  Similarity=0.048  Sum_probs=91.4

Q ss_pred             HHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh--------CCCCHHHHHH
Q 010976          139 TFAAKRYANA-IERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--------CPTLHDAFYN  209 (496)
Q Consensus       139 ~~Ai~~~~~a-l~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--------~P~~~~a~~~  209 (496)
                      .+++..+... -.+.|+....+..++.++..+++              .++|+..-.++.-+        .|+....|.+
T Consensus       955 ~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d--------------~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen  955 PESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGD--------------NQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred             hhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcc--------------hHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence            3344466533 34578889999999999999999              99999888877655        4567778889


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh
Q 010976          210 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAV-QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  288 (496)
Q Consensus       210 lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al-~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l  288 (496)
                      ++...+.    .++...|+..+..|.....-.. +..|.-.....|++.++...+++          +.|+.+.+.|+++
T Consensus      1021 lal~~f~----~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~----------d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1021 LALYEFA----VKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEA----------DTALRYLESALAK 1086 (1236)
T ss_pred             HHHHHHh----ccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHH----------HHHHHHHHHHHHH
Confidence            9988888    8888888855444433222111 23466667778999999999999          9999999999986


Q ss_pred             c
Q 010976          289 Q  289 (496)
Q Consensus       289 ~  289 (496)
                      +
T Consensus      1087 ~ 1087 (1236)
T KOG1839|consen 1087 N 1087 (1236)
T ss_pred             H
Confidence            4

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=88.30  E-value=33  Score=38.48  Aligned_cols=150  Identities=13%  Similarity=0.039  Sum_probs=97.0

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC----
Q 010976          132 RSRQRILTFAAKRYANAIERNPED-----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----  202 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~-----~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~----  202 (496)
                      ....|++++|+++.+.++..-|.+     ..++..+|.+..-.|+              +++|..+.+.+.++.-.    
T Consensus       468 al~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~--------------~~~Al~~~~~a~~~a~~~~~~  533 (894)
T COG2909         468 ALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGE--------------LTQALALMQQAEQMARQHDVY  533 (894)
T ss_pred             HHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhch--------------HHHHHHHHHHHHHHHHHcccH
Confidence            345699999999999999988865     4567788889999999              99999999999888332    


Q ss_pred             CHHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHH
Q 010976          203 LHDA--FYNWAIAISDRAKMRGRTKEAEELWKQAT-KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI  279 (496)
Q Consensus       203 ~~~a--~~~lg~~~~~~~~~~g~~~eA~~~~~~A~-~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai  279 (496)
                      +..+  .+..+.++..    +|+...+..  .++. ..+.+-+...|-+.......+.+++..-++          +.+.
T Consensus       534 ~l~~~~~~~~s~il~~----qGq~~~a~~--~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~----------~~~~  597 (894)
T COG2909         534 HLALWSLLQQSEILEA----QGQVARAEQ--EKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRL----------DLAE  597 (894)
T ss_pred             HHHHHHHHHHHHHHHH----hhHHHHHHH--HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH----------hhhh
Confidence            2222  3344566666    783333331  1111 122333444455555656666666655556          7777


Q ss_pred             HHHHHHHHhc----CC--CH-HHHHHHHHHHHHcchhHH
Q 010976          280 SKFRAAIQLQ----FD--FH-RAIYNLGTVLYGLAEDTL  311 (496)
Q Consensus       280 ~~~~~Al~l~----P~--~~-~a~~~lg~~~~~~g~~~~  311 (496)
                      ...++.+++.    |.  .. -++++|+.+++..|+.+.
T Consensus       598 ~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~  636 (894)
T COG2909         598 AEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDK  636 (894)
T ss_pred             HHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHH
Confidence            7777776652    22  22 234588999999998433

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.12  E-value=1.2  Score=29.40  Aligned_cols=34  Identities=15%  Similarity=0.091  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Q 010976          205 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV  242 (496)
Q Consensus       205 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al  242 (496)
                      ++|..||.+-..    .++|++|++.|++|+...++.+
T Consensus         2 dv~~~Lgeisle----~e~f~qA~~D~~~aL~i~~~l~   35 (38)
T PF10516_consen    2 DVYDLLGEISLE----NENFEQAIEDYEKALEIQEELL   35 (38)
T ss_pred             cHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHhc
Confidence            467888988888    9999999987777777766543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=88.09  E-value=12  Score=35.07  Aligned_cols=176  Identities=19%  Similarity=0.217  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH----HHHHH
Q 010976          276 RTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS----VYSSA  351 (496)
Q Consensus       276 ~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~----~y~~a  351 (496)
                      .+|+...+.-++-+|.+......|-.+|.-.|+                   |.+|..-++-+.++.|.+.    .|+..
T Consensus        18 ~dai~~a~~qVkakPtda~~RhflfqLlcvaGd-------------------w~kAl~Ql~l~a~l~p~~t~~a~lyr~l   78 (273)
T COG4455          18 QDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGD-------------------WEKALAQLNLAATLSPQDTVGASLYRHL   78 (273)
T ss_pred             HHHHHHHHHHHhcCCccccchhHHHHHHhhcch-------------------HHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence            999999999999999999998888899999998                   8888888888899999877    45554


Q ss_pred             HHhhhcCCchhhhhhccccCCCCCCCCCChhhhhhh---ccccchhhhh------------hhcccccc----ccc--cc
Q 010976          352 LRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRS---QFVLNHEGLQ------------QASKNEQK----QVT--RS  410 (496)
Q Consensus       352 l~~~~~~~p~~~l~~g~l~~~~~~~~~~~~~~~~~~---~~~l~~~~l~------------~~~~~~~~----~~~--~~  410 (496)
                      ++.-      ..-+.-+.....+.....+...|...   .+.+.+++-.            +...+-+.    +..  .+
T Consensus        79 ir~e------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG~~~gg~fawiaD  152 (273)
T COG4455          79 IRCE------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIGHADGGSFAWIAD  152 (273)
T ss_pred             HHHH------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCcccCCcchhhhhh
Confidence            4321      01111112233345555566677532   2233333211            11111110    000  11


Q ss_pred             cCCCCCC---CCCCCceeeeecCceeeccccc--CC-CCC-CCCeeeEeecCCc---eeeeecChhhhhhHHHHHHHHH
Q 010976          411 LSGRTGD---FSPDRRAIRIEVPDIVSVSACA--DL-TLP-PGAGLCIETIHGP---VFLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       411 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~-~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      .-.|.|+   +....++++||...|.|++.-.  ++ -|- .+.-+++.  +|.   +||-++=-.+-+. .|++||-+
T Consensus       153 sD~RlgpvlEvitnG~Y~Wipfs~IrSL~v~~psrlrDL~w~paeltl~--dg~~~~a~LparY~gt~e~-ddalrLgr  228 (273)
T COG4455         153 SDDRLGPVLEVITNGRYLWIPFSRIRSLSVDPPSRLRDLAWRPAELTLR--DGAIASALLPARYHGTGED-DDALRLGR  228 (273)
T ss_pred             cccccCcceEEEeCCEEEEEehhhccccccCCCCChHHhhcccceEEEe--cCceeEEEeeeecCCCccc-hHHHHhcc
Confidence            1123333   3344589999999999877322  21 111 33334443  332   4888876666665 67777744

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=87.76  E-value=1.9  Score=28.02  Aligned_cols=34  Identities=21%  Similarity=0.136  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHH--HHHHHHhCCCC
Q 010976          156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK--YDEATRLCPTL  203 (496)
Q Consensus       156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~--~~~Al~l~P~~  203 (496)
                      ++.++.+|..+..+|+              +++|+..  |.-+..+++.|
T Consensus         1 ~e~~y~~a~~~y~~~k--------------y~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    1 PEYLYGLAYNFYQKGK--------------YDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHTTT-
T ss_pred             CcHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHHHhcccC
Confidence            3568899999999999              9999999  55888888764

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=87.75  E-value=4.1  Score=31.25  Aligned_cols=44  Identities=25%  Similarity=0.338  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS  248 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~  248 (496)
                      +++|+....+|++.               -.    .|++++|+.+|.+|++.|.+++...|+.
T Consensus         5 ~~~A~~li~~Av~~---------------d~----~g~~~eAl~~Y~~a~e~l~~~~~~~~~~   48 (77)
T smart00745        5 LSKAKELISKALKA---------------DE----AGDYEEALELYKKAIEYLLEGIKVESDS   48 (77)
T ss_pred             HHHHHHHHHHHHHH---------------HH----cCCHHHHHHHHHHHHHHHHHHhccCCCH
Confidence            66677766666543               33    8999999999999999999999988753

>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain

Probab=87.35  E-value=1.1  Score=36.80  Aligned_cols=80  Identities=14%  Similarity=0.234  Sum_probs=46.9

Q ss_pred             hhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCC-CCCeeeEeecC----C
Q 010976          382 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP-PGAGLCIETIH----G  456 (496)
Q Consensus       382 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~  456 (496)
                      ..|.++||++-...|-.+-..+..              .+...+.+.+..   .+...|.+|. ..+.|.+.+..    .
T Consensus        18 K~~KrrwF~lk~~~L~YyK~kee~--------------~~~p~i~lnl~g---cev~~dv~~~~~kf~I~l~~ps~~~~r   80 (106)
T cd01237          18 KGYKQYWFTFRDTSISYYKSKEDS--------------NGAPIGQLNLKG---CEVTPDVNVAQQKFHIKLLIPTAEGMN   80 (106)
T ss_pred             hhheeEEEEEeCCEEEEEccchhc--------------CCCCeEEEecCc---eEEcccccccccceEEEEecCCccCCe
Confidence            369999999975555443222210              012233444431   1222333343 34666665433    2


Q ss_pred             ceeeeecChhhhhhHHHHHHHH
Q 010976          457 PVFLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       457 ~~~~~~~~~~~~~~~~~a~~~~  478 (496)
                      .+||.++|.+..+.|..|.||+
T Consensus        81 ~y~l~cdsEeqya~Wmaa~rla  102 (106)
T cd01237          81 EVWLRCDNEKQYAKWMAACRLA  102 (106)
T ss_pred             EEEEECCCHHHHHHHHHHHHHh
Confidence            4699999999999999999985

Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C

Probab=87.34  E-value=0.75  Score=38.43  Aligned_cols=32  Identities=19%  Similarity=0.226  Sum_probs=23.6

Q ss_pred             CCCeeeEeecCCceeeeecChhhhhhHHHHHH
Q 010976          445 PGAGLCIETIHGPVFLVADSWEALDGWLDAIR  476 (496)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  476 (496)
                      ....+-+.|...-.+|.+++.++..+|.+||.
T Consensus        79 ~~~~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~  110 (112)
T PF15413_consen   79 HLKVFSIFTPTKTFHLRCETREDRYDWIEALQ  110 (112)
T ss_dssp             SSEEEEEE-SS-EEEEEESSHHHHHHHHHHHH
T ss_pred             CCCCcEEECCCcEEEEEECCHHHHHHHHHHHH
Confidence            33445556566666999999999999999996

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=87.14  E-value=34  Score=34.08  Aligned_cols=193  Identities=19%  Similarity=0.092  Sum_probs=102.8

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCC------------
Q 010976          134 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP------------  201 (496)
Q Consensus       134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P------------  201 (496)
                      +..+..+-|+.-.+|+++||+.+.+|..|+.--..  -              ..+|.+.+++|++.-.            
T Consensus       196 RERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~--T--------------i~~AE~l~k~ALka~e~~yr~sqq~qh~  259 (556)
T KOG3807|consen  196 RERNPPARIKAAYQALEINNECATAYVLLAEEEAT--T--------------IVDAERLFKQALKAGETIYRQSQQCQHQ  259 (556)
T ss_pred             HhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhh--h--------------HHHHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence            34566778888899999999999998887653322  1              5556666666655410            


Q ss_pred             -----------CCHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCcc
Q 010976          202 -----------TLHDAF--YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSAIV  266 (496)
Q Consensus       202 -----------~~~~a~--~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~l~~~g~~~  266 (496)
                                 .+...|  ..|+.|-.+    +|+..+|+       +.++...+-.|-  -...+-||-.++.++.-| 
T Consensus       260 ~~~~da~~rRDtnvl~YIKRRLAMCARk----lGrlrEA~-------K~~RDL~ke~pl~t~lniheNLiEalLE~QAY-  327 (556)
T KOG3807|consen  260 SPQHEAQLRRDTNVLVYIKRRLAMCARK----LGRLREAV-------KIMRDLMKEFPLLTMLNIHENLLEALLELQAY-  327 (556)
T ss_pred             ccchhhhhhcccchhhHHHHHHHHHHHH----hhhHHHHH-------HHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH-
Confidence                       111122  356666666    99999999       566655555452  123455666666666555 


Q ss_pred             hHHHhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcH
Q 010976          267 PAREKQTIVRTAISKFRAAIQL-QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  345 (496)
Q Consensus       267 ~A~~~~~~~~~Ai~~~~~Al~l-~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~  345 (496)
                               .+-...+-+-=.+ -|..+.+.|.-+.+-.+.-.+... ........++.+  -..|.+.+.+|.+.+|..
T Consensus       328 ---------ADvqavLakYDdislPkSA~icYTaALLK~RAVa~kFs-pd~asrRGLS~A--E~~AvEAihRAvEFNPHV  395 (556)
T KOG3807|consen  328 ---------ADVQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKFS-PETASRRGLSTA--EINAVEAIHRAVEFNPHV  395 (556)
T ss_pred             ---------HHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhcC-chhhhhccccHH--HHHHHHHHHHHhhcCCCC
Confidence                     2222221111111 255555555433322111100000 000000111222  356888899999999999


Q ss_pred             HHHHHHHHhhhcCC-chhhhhhcc
Q 010976          346 SVYSSALRLVRSML-PLPYLKAGY  368 (496)
Q Consensus       346 ~~y~~al~~~~~~~-p~~~l~~g~  368 (496)
                      +.|.--++  .-.+ |...+++|.
T Consensus       396 PkYLLE~k--slIlPPEHiLKRGD  417 (556)
T KOG3807|consen  396 PKYLLEMK--SLILPPEHILKRGD  417 (556)
T ss_pred             cHHHHHHH--hccCCHHHHhhccc
Confidence            97753332  2233 344555554

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=86.91  E-value=4.4  Score=32.47  Aligned_cols=51  Identities=20%  Similarity=0.098  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 010976          186 LEEACKKYDEATRLCPT---------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK  240 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~---------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~  240 (496)
                      |.+|++.+.+.+.....         ...+..++|.++..    .|++++|+..+++|+...++
T Consensus        14 y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~----~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen   14 YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR----FGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHH
Confidence            99998888888877322         24567888998988    99999999777776666554

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.32  E-value=2.1  Score=32.93  Aligned_cols=43  Identities=23%  Similarity=0.244  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN  247 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~  247 (496)
                      +++|+....+|+..+               .    .|++++|+.+|.+|++.|..++...++
T Consensus         3 l~~Ai~lv~~Av~~D---------------~----~g~y~eA~~lY~~ale~~~~~~k~e~~   45 (75)
T cd02684           3 LEKAIALVVQAVKKD---------------Q----RGDAAAALSLYCSALQYFVPALHYETD   45 (75)
T ss_pred             HHHHHHHHHHHHHHH---------------H----hccHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            567788888776554               3    899999999999999999999988754

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=85.36  E-value=9.6  Score=39.00  Aligned_cols=79  Identities=13%  Similarity=0.036  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHhCC--------CCH----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010976          186 LEEACKKYDEATRLCP--------TLH----------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN  247 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P--------~~~----------~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~  247 (496)
                      |..|+.-|..||+++.        ..+          .+--.|..||..    +++.+-|+       ..-.+.|.+||.
T Consensus       192 ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~----~rkpdlAL-------nh~hrsI~lnP~  260 (569)
T PF15015_consen  192 YAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLR----MRKPDLAL-------NHSHRSINLNPS  260 (569)
T ss_pred             HHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhh----cCCCchHH-------HHHhhhhhcCcc
Confidence            7777777777776632        211          134578889999    99999999       888999999999


Q ss_pred             CHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH
Q 010976          248 SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA  285 (496)
Q Consensus       248 ~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A  285 (496)
                      +..-+...+.++..+.+|          .+|-..+--|
T Consensus       261 ~frnHLrqAavfR~LeRy----------~eAarSamia  288 (569)
T PF15015_consen  261 YFRNHLRQAAVFRRLERY----------SEAARSAMIA  288 (569)
T ss_pred             hhhHHHHHHHHHHHHHHH----------HHHHHHHHHH
Confidence            999999999999999999          6666554443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=85.29  E-value=14  Score=33.54  Aligned_cols=86  Identities=21%  Similarity=0.055  Sum_probs=60.4

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhC--CCC
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC--PTL  203 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~--P~~  203 (496)
                      +.-+.+.|+++.|++.|.++.......   .+.+.++-.+....++              +.....+..++-.+-  +.+
T Consensus        43 ~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d--------------~~~v~~~i~ka~~~~~~~~d  108 (177)
T PF10602_consen   43 ADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGD--------------WSHVEKYIEKAESLIEKGGD  108 (177)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHHhccch
Confidence            334677899999999999988766432   5677788888888999              999999999887763  233


Q ss_pred             HHHHH----HHHHHHHHHHHHcCCHHHHHHHHH
Q 010976          204 HDAFY----NWAIAISDRAKMRGRTKEAEELWK  232 (496)
Q Consensus       204 ~~a~~----~lg~~~~~~~~~~g~~~eA~~~~~  232 (496)
                      ....+    .-|..+..    .++|.+|.+.|-
T Consensus       109 ~~~~nrlk~~~gL~~l~----~r~f~~AA~~fl  137 (177)
T PF10602_consen  109 WERRNRLKVYEGLANLA----QRDFKEAAELFL  137 (177)
T ss_pred             HHHHHHHHHHHHHHHHH----hchHHHHHHHHH
Confidence            33322    23344444    788888874443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.28  E-value=33  Score=36.66  Aligned_cols=112  Identities=14%  Similarity=0.116  Sum_probs=67.5

Q ss_pred             ccHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh----
Q 010976          136 RILTFAAKRYANAIER------------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL----  199 (496)
Q Consensus       136 g~~~~Ai~~~~~al~~------------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l----  199 (496)
                      ..|++|...|.-+...            +|-+.+.+..++.++..+|+       .....+..+.++-.+++|+.-    
T Consensus       252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD-------~e~aadLieR~Ly~~d~a~hp~F~~  324 (665)
T KOG2422|consen  252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGD-------REMAADLIERGLYVFDRALHPNFIP  324 (665)
T ss_pred             hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHHHHhcccccc
Confidence            5788899888888765            36778999999999999999       111223344445555555432    


Q ss_pred             ----------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHc
Q 010976          200 ----------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-SPQALNNWGLALQEL  262 (496)
Q Consensus       200 ----------~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~  262 (496)
                                .|.|-..|..+    +.    .-+.-+-..||+.|.+.++-.+.++|. +|-+...+-..|.-.
T Consensus       325 ~sg~cRL~y~~~eNR~FyL~l----~r----~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALr  390 (665)
T KOG2422|consen  325 FSGNCRLPYIYPENRQFYLAL----FR----YMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALR  390 (665)
T ss_pred             ccccccCcccchhhHHHHHHH----HH----HHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHH
Confidence                      12221111111    11    111122245566666999999999998 877666555555433

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.11  E-value=8  Score=29.72  Aligned_cols=43  Identities=23%  Similarity=0.186  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN  247 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~  247 (496)
                      +.+|+..+.+|++.+               .    .|++++|..+|.+|++.|..+++..++
T Consensus         3 l~~A~~l~~~Ave~d---------------~----~~~y~eA~~~Y~~~i~~~~~~~k~e~~   45 (75)
T cd02677           3 LEQAAELIRLALEKE---------------E----EGDYEAAFEFYRAGVDLLLKGVQGDSS   45 (75)
T ss_pred             HHHHHHHHHHHHHHH---------------H----HhhHHHHHHHHHHHHHHHHHHhccCCC
Confidence            567777777776654               3    799999999999999999999988765

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>cd00900 PH-like Pleckstrin homology-like domain

Probab=85.05  E-value=1.2  Score=34.85  Aligned_cols=80  Identities=25%  Similarity=0.354  Sum_probs=51.7

Q ss_pred             hhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeec---CCc
Q 010976          381 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETI---HGP  457 (496)
Q Consensus       381 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  457 (496)
                      ...|.++++.|....+.-+.......               .....+++..+. +....+.. -..+.|.+.+.   ...
T Consensus        16 ~~~w~~~~~~l~~~~l~~~~~~~~~~---------------~~~~~~~l~~~~-v~~~~~~~-~~~~~F~i~~~~~~~~~   78 (99)
T cd00900          16 GKRWKRRWFFLFDDGLLLYKSDDKKE---------------IKPGSIPLSEIS-VEEDPDGS-DDPNCFAIVTKDRGRRV   78 (99)
T ss_pred             ccCceeeEEEEECCEEEEEEcCCCCc---------------CCCCEEEccceE-EEECCCCC-CCCceEEEECCCCCcEE
Confidence            35799999999766655543332211               000356666666 54443322 24577888777   345


Q ss_pred             eeeeecChhhhhhHHHHHHH
Q 010976          458 VFLVADSWEALDGWLDAIRL  477 (496)
Q Consensus       458 ~~~~~~~~~~~~~~~~a~~~  477 (496)
                      ++|.+.|.+++..|.+||+.
T Consensus        79 ~~~~~~~~~~~~~W~~al~~   98 (99)
T cd00900          79 FVFQADSEEEAQEWVEALQQ   98 (99)
T ss_pred             EEEEcCCHHHHHHHHHHHhc
Confidence            69999999999999999974

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.01  E-value=1.6  Score=28.71  Aligned_cols=30  Identities=20%  Similarity=0.291  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhC
Q 010976          157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC  200 (496)
Q Consensus       157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~  200 (496)
                      +++..||.+-...++              |++|+..|++++++.
T Consensus         2 dv~~~Lgeisle~e~--------------f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENEN--------------FEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHHH
Confidence            567889999999999              999999999999873

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=84.84  E-value=43  Score=33.50  Aligned_cols=158  Identities=18%  Similarity=0.090  Sum_probs=86.4

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC---CCCCCC---------CcchhhhHHHHHHHHHHHHHhC-
Q 010976          134 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADN---VSLDST---------SPSKDALLEEACKKYDEATRLC-  200 (496)
Q Consensus       134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~---~~~~~~---------~~~~~~~~~~A~~~~~~Al~l~-  200 (496)
                      +.+--++||..-.-.+.+.|..++++-.++.++++..+.   ...++.         +.-.-+..+++...+.+|+... 
T Consensus       208 ra~Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~  287 (415)
T COG4941         208 RADLCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRR  287 (415)
T ss_pred             cchHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence            345678899999999999999999999999988877663   222222         1112355788888899988873 


Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHH
Q 010976          201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS  280 (496)
Q Consensus       201 P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~  280 (496)
                      |.-....-.++.++... ...++     ..|..-..+|+....+.| ++..-.|.+.++.+.--.          ..++.
T Consensus       288 pGPYqlqAAIaa~HA~a-~~aed-----tDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp----------~agLa  350 (415)
T COG4941         288 PGPYQLQAAIAALHARA-RRAED-----TDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGP----------AAGLA  350 (415)
T ss_pred             CChHHHHHHHHHHHHhh-cccCC-----CChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhH----------HhHHH
Confidence            44434444444444330 00111     122222255555555555 334444444444444333          44444


Q ss_pred             HHHHHHHh--cCCCHHHHHHHHHHHHHcch
Q 010976          281 KFRAAIQL--QFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       281 ~~~~Al~l--~P~~~~a~~~lg~~~~~~g~  308 (496)
                      ..+....-  -.++.-.+...|..+.++|+
T Consensus       351 ~ve~L~~~~~L~gy~~~h~~RadlL~rLgr  380 (415)
T COG4941         351 MVEALLARPRLDGYHLYHAARADLLARLGR  380 (415)
T ss_pred             HHHHhhcccccccccccHHHHHHHHHHhCC
Confidence            44333322  11233344445555666665

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=84.77  E-value=33  Score=31.77  Aligned_cols=51  Identities=10%  Similarity=0.090  Sum_probs=41.1

Q ss_pred             CCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcch
Q 010976          247 NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD----FHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       247 ~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~----~~~a~~~lg~~~~~~g~  308 (496)
                      +.++..+.||..|.+...           ++++..|.++|++...    +++++..|+.+++.+++
T Consensus       139 ~t~elq~aLAtyY~krD~-----------~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~  193 (203)
T PF11207_consen  139 ETAELQYALATYYTKRDP-----------EKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN  193 (203)
T ss_pred             CCHHHHHHHHHHHHccCH-----------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence            478888888888875544           8999999999988543    58889999999999887

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=84.72  E-value=1  Score=26.71  Aligned_cols=25  Identities=20%  Similarity=-0.000  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHH
Q 010976          250 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRA  284 (496)
Q Consensus       250 ~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~  284 (496)
                      .+++++|.++...|++          ++|...+++
T Consensus         2 ~a~~~la~~~~~~G~~----------~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQGDP----------DEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcCCH----------HHHHHHHhC
Confidence            5788999999999999          999888763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=84.17  E-value=1.2  Score=44.25  Aligned_cols=109  Identities=17%  Similarity=0.104  Sum_probs=85.7

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHh-------------cCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHH
Q 010976          221 RGRTKEAEELWKQATKNYEKAVQ-------------LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ  287 (496)
Q Consensus       221 ~g~~~eA~~~~~~A~~~~~~Al~-------------l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~  287 (496)
                      .+++..|...|.++..++.. +.             +...-...+.|++.+-...+.+          ..|+..-..+++
T Consensus       235 k~~~~~a~~k~~k~~r~~~~-~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~----------~~a~~~~~~~~~  303 (372)
T KOG0546|consen  235 KQRYREALAKYRKALRYLSE-QSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGR----------GGARFRTNEALR  303 (372)
T ss_pred             hccHhHHHHHHHHHhhhhcc-cccccccccccccccccccccccccchHHhcccccCC----------Ccceeccccccc
Confidence            77777887777777666663 11             1122234566788888888888          888888888888


Q ss_pred             hcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhhhcCC
Q 010976          288 LQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSML  359 (496)
Q Consensus       288 l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~~~~~~  359 (496)
                      .++....+++..+..+..+.+                   +..+...++.+....|++......+..++...
T Consensus       304 ~~~s~tka~~Rr~~~~~~~~~-------------------~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~  356 (372)
T KOG0546|consen  304 DERSKTKAHYRRGQAYKLLKN-------------------YDEALEDLKKAKQKAPNDKAIEEELENVRQKK  356 (372)
T ss_pred             cChhhCcHHHHHHhHHHhhhc-------------------hhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence            999999999999999999998                   88899999999999999998888877666544

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.96  E-value=4.8  Score=30.73  Aligned_cols=27  Identities=30%  Similarity=0.340  Sum_probs=25.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010976          221 RGRTKEAEELWKQATKNYEKAVQLNWN  247 (496)
Q Consensus       221 ~g~~~eA~~~~~~A~~~~~~Al~l~P~  247 (496)
                      .|++++|+.+|.+|++.|..++...|+
T Consensus        19 ~g~~~~Al~~Y~~a~e~l~~~~~~~~~   45 (75)
T cd02656          19 DGNYEEALELYKEALDYLLQALKAEKE   45 (75)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence            899999999999999999999988876

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=83.84  E-value=1  Score=47.80  Aligned_cols=55  Identities=13%  Similarity=0.192  Sum_probs=39.8

Q ss_pred             eeeecCceeecccccCCCCC-CCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHHH
Q 010976          425 IRIEVPDIVSVSACADLTLP-PGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      -.+.+.++.+|.|...+..| ..+.|.+-|..|. +|++++|.++++.|..+|+-+.
T Consensus       420 ~~~~l~~~~~v~pv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~W~~~~~~~~  476 (478)
T PTZ00267        420 KSVNLETVNDVFPVPEVYSQKHPNQLVLWFNNGQKIIAYAKTAEDRDQWISKFQRAC  476 (478)
T ss_pred             ccccHHHhcccccccHHhcCCCCceEEEEecCCcEEEEecCChHHHHHHHHHHHHHh
Confidence            34446677777777443444 5566666665665 5999999999999999998764

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=83.61  E-value=3.3  Score=26.86  Aligned_cols=33  Identities=12%  Similarity=-0.007  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHccCcchHHHhhhhHHHHHHH--HHHHHHhcCCC
Q 010976          250 QALNNWGLALQELSAIVPAREKQTIVRTAISK--FRAAIQLQFDF  292 (496)
Q Consensus       250 ~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~--~~~Al~l~P~~  292 (496)
                      +.++.+|..+...|++          ++|+..  |+-+..+++.|
T Consensus         2 e~~y~~a~~~y~~~ky----------~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKY----------DEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHhcccC
Confidence            5678899999999999          999999  55888888764

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=83.45  E-value=76  Score=34.87  Aligned_cols=127  Identities=15%  Similarity=0.081  Sum_probs=81.5

Q ss_pred             ccHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHH-HhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCC--CCHH---
Q 010976          136 RILTFAAKRYANAIERN-P---EDYDALYNWALVLQ-ESADNVSLDSTSPSKDALLEEACKKYDEATRLCP--TLHD---  205 (496)
Q Consensus       136 g~~~~Ai~~~~~al~~~-P---~~~~a~~~lg~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P--~~~~---  205 (496)
                      +-...||.+++.+++.. +   ..+.+++.+|.+|+ ...+              ++.|..++++++.+..  +..+   
T Consensus        35 kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n--------------~~~Ae~~L~k~~~l~~~~~~~d~k~  100 (608)
T PF10345_consen   35 KLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETEN--------------LDLAETYLEKAILLCERHRLTDLKF  100 (608)
T ss_pred             HHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhccccchHHHHH
Confidence            45567899999888522 2   13567888999998 4555              9999999999999874  4333   


Q ss_pred             -HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHH--HHHHHccCcchHHHhhhhHHHHHHH
Q 010976          206 -AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-SPQALNNWG--LALQELSAIVPAREKQTIVRTAISK  281 (496)
Q Consensus       206 -a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~-~~~a~~~lg--~~l~~~g~~~~A~~~~~~~~~Ai~~  281 (496)
                       +.+.++.++.+    .+... |....+++++.++.    .+. .....+.+-  ..+...+++          ..|+..
T Consensus       101 ~~~~ll~~i~~~----~~~~~-a~~~l~~~I~~~~~----~~~~~w~~~frll~~~l~~~~~d~----------~~Al~~  161 (608)
T PF10345_consen  101 RCQFLLARIYFK----TNPKA-ALKNLDKAIEDSET----YGHSAWYYAFRLLKIQLALQHKDY----------NAALEN  161 (608)
T ss_pred             HHHHHHHHHHHh----cCHHH-HHHHHHHHHHHHhc----cCchhHHHHHHHHHHHHHHhcccH----------HHHHHH
Confidence             34455555655    77666 88766766666665    122 222222322  122222576          899999


Q ss_pred             HHHHHHhc--CCCHHH
Q 010976          282 FRAAIQLQ--FDFHRA  295 (496)
Q Consensus       282 ~~~Al~l~--P~~~~a  295 (496)
                      ++....+.  ..++.+
T Consensus       162 L~~~~~~a~~~~d~~~  177 (608)
T PF10345_consen  162 LQSIAQLANQRGDPAV  177 (608)
T ss_pred             HHHHHHHhhhcCCHHH
Confidence            99988875  354433

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain

Probab=83.16  E-value=2.2  Score=35.91  Aligned_cols=38  Identities=16%  Similarity=0.308  Sum_probs=32.4

Q ss_pred             CCCeeeEeecCCce-eeeecChhhhhhHHHHHHHHHHHH
Q 010976          445 PGAGLCIETIHGPV-FLVADSWEALDGWLDAIRLVYTIY  482 (496)
Q Consensus       445 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~  482 (496)
                      +-++|+|.|.+|.. .|-|.|.+++..|+++|..+...+
T Consensus        76 r~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~~  114 (117)
T cd01230          76 KPHVFRLRTADWREFLFQTSSLKELQSWIERINVVAAAF  114 (117)
T ss_pred             CCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            77899999988776 666889999999999999987654

EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF13226 DUF4034: Domain of unknown function (DUF4034)

Probab=83.05  E-value=15  Score=35.79  Aligned_cols=78  Identities=15%  Similarity=0.002  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010976          188 EACKKYDEATRLCPTLHDAFYNWAIAISDRAKM-----------RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG  256 (496)
Q Consensus       188 ~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~-----------~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  256 (496)
                      .-...++.-++.+|++..++..+|..+...+..           ..++..+..+.++|+..+.+|+.++|....++..+-
T Consensus        61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~  140 (277)
T PF13226_consen   61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI  140 (277)
T ss_pred             hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            456677888888999999999999998875321           123455667789999999999999999999999998


Q ss_pred             HHHHHccCc
Q 010976          257 LALQELSAI  265 (496)
Q Consensus       257 ~~l~~~g~~  265 (496)
                      .+-...|..
T Consensus       141 ~~s~~fgeP  149 (277)
T PF13226_consen  141 NISAYFGEP  149 (277)
T ss_pred             HHHhhcCCc
Confidence            888888886

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=82.81  E-value=7.7  Score=37.91  Aligned_cols=64  Identities=19%  Similarity=0.119  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHH
Q 010976          204 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFR  283 (496)
Q Consensus       204 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~  283 (496)
                      ..++..++..+..    .|+++.++       ..+++.+.++|.+-.+|..+-.+|...|+.          ..|+..|+
T Consensus       153 ~~~l~~lae~~~~----~~~~~~~~-------~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~----------~~ai~~y~  211 (280)
T COG3629         153 IKALTKLAEALIA----CGRADAVI-------EHLERLIELDPYDEPAYLRLMEAYLVNGRQ----------SAAIRAYR  211 (280)
T ss_pred             HHHHHHHHHHHHh----cccHHHHH-------HHHHHHHhcCccchHHHHHHHHHHHHcCCc----------hHHHHHHH
Confidence            4566777777777    88888888       899999999999999999999999999999          99999999


Q ss_pred             HHHHh
Q 010976          284 AAIQL  288 (496)
Q Consensus       284 ~Al~l  288 (496)
                      +.-+.
T Consensus       212 ~l~~~  216 (280)
T COG3629         212 QLKKT  216 (280)
T ss_pred             HHHHH
Confidence            87653

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=82.62  E-value=1.6  Score=25.82  Aligned_cols=25  Identities=24%  Similarity=0.150  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHH
Q 010976          157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDE  195 (496)
Q Consensus       157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  195 (496)
                      .+.+++|.++..+|+              +++|...+++
T Consensus         2 ~a~~~la~~~~~~G~--------------~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQGD--------------PDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcCC--------------HHHHHHHHhC
Confidence            568899999999999              9999988763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.54  E-value=7.9  Score=30.09  Aligned_cols=43  Identities=14%  Similarity=0.273  Sum_probs=35.6

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 010976          185 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW  246 (496)
Q Consensus       185 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P  246 (496)
                      .|+.|.++.++||..+               .    .|+.++|+.+|++++..+.+++.+.-
T Consensus         4 ~~~~A~~~I~kaL~~d---------------E----~g~~e~Al~~Y~~gi~~l~eg~ai~~   46 (79)
T cd02679           4 YYKQAFEEISKALRAD---------------E----WGDKEQALAHYRKGLRELEEGIAVPV   46 (79)
T ss_pred             HHHHHHHHHHHHhhhh---------------h----cCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence            4777887777777654               3    89999999999999999999998864

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A

Probab=82.32  E-value=2.3  Score=35.88  Aligned_cols=95  Identities=18%  Similarity=0.242  Sum_probs=46.9

Q ss_pred             ChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCcee
Q 010976          380 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVF  459 (496)
Q Consensus       380 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (496)
                      ....|..++.+|....|.-.....+.........  ........-..|.|..- -++...|-+- +-++|++.|.+|..|
T Consensus        22 ~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~--~~~~~~~p~~~i~L~~a-~a~~a~dY~K-r~~VFrL~~~dg~e~   97 (119)
T PF15410_consen   22 SKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDI--QSVENAKPDSSISLHHA-LAEIASDYTK-RKNVFRLRTADGSEY   97 (119)
T ss_dssp             S---EEEEEEEEETTEEEEESSHHHHCCT-BS-----SS--E-----EE-TT--EEEEETTBTT-CSSEEEEE-TTS-EE
T ss_pred             CCCCccEEeEEEECCEEEEEccCcccccCCcccc--cccccCcceeEEEecce-EEEeCccccc-CCeEEEEEeCCCCEE
Confidence            4558998888886554443222111110000000  00000111234555532 2333555554 899999999999985


Q ss_pred             e-eecChhhhhhHHHHHHHH
Q 010976          460 L-VADSWEALDGWLDAIRLV  478 (496)
Q Consensus       460 ~-~~~~~~~~~~~~~a~~~~  478 (496)
                      | -|.|.+++..|+++|-.+
T Consensus        98 Lfqa~~~~~m~~Wi~~IN~~  117 (119)
T PF15410_consen   98 LFQASDEEEMNEWIDAINYA  117 (119)
T ss_dssp             EEE-SSHHHHHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHhhh
Confidence            5 567999999999999765

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=82.24  E-value=21  Score=40.97  Aligned_cols=108  Identities=15%  Similarity=0.124  Sum_probs=79.3

Q ss_pred             hhhHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHH
Q 010976          130 EGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDA  206 (496)
Q Consensus       130 ~~~~~~g~~~~Ai~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a  206 (496)
                      .+....+.|+.|+..|++.-.-.|.-   .++.+..|..+..+..       .......+.+|+..|++.-. .|.-+--
T Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~  554 (932)
T PRK13184        483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKAS-------EQGDPRDFTQALSEFSYLHG-GVGAPLE  554 (932)
T ss_pred             HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHH-------hcCChHHHHHHHHHHHHhcC-CCCCchH
Confidence            34556689999999999999988865   5788899998887665       11112458888888887642 3445555


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010976          207 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG  256 (496)
Q Consensus       207 ~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  256 (496)
                      |..-+.+|..    +|+++|-+       ++|.-|++..|++|..-...-
T Consensus       555 ~~~~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  593 (932)
T PRK13184        555 YLGKALVYQR----LGEYNEEI-------KSLLLALKRYSQHPEISRLRD  593 (932)
T ss_pred             HHhHHHHHHH----hhhHHHHH-------HHHHHHHHhcCCCCccHHHHH
Confidence            6777777888    99999999       788888888888876544333

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=81.36  E-value=73  Score=33.25  Aligned_cols=65  Identities=20%  Similarity=0.130  Sum_probs=50.2

Q ss_pred             hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH----H
Q 010976          272 QTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS----V  347 (496)
Q Consensus       272 ~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~----~  347 (496)
                      +|++.++.-+-.-..++.| .+.++..+|.+++...+                   |.+|..|+.   .+-|+..    .
T Consensus       475 qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~-------------------Y~eA~~~l~---~LP~n~~~~dsk  531 (549)
T PF07079_consen  475 QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKR-------------------YQEAWEYLQ---KLPPNERMRDSK  531 (549)
T ss_pred             cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhh-------------------HHHHHHHHH---hCCCchhhHHHH
Confidence            3444999999899999999 89999999999999998                   888888864   4555544    3


Q ss_pred             HHHHHHhhhcCC
Q 010976          348 YSSALRLVRSML  359 (496)
Q Consensus       348 y~~al~~~~~~~  359 (496)
                      ..+++.+.++.+
T Consensus       532 vqKAl~lCqKh~  543 (549)
T PF07079_consen  532 VQKALALCQKHL  543 (549)
T ss_pred             HHHHHHHHHHhh
Confidence            456666665554

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=80.46  E-value=14  Score=33.59  Aligned_cols=152  Identities=14%  Similarity=0.129  Sum_probs=95.1

Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010976          136 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS  215 (496)
Q Consensus       136 g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~  215 (496)
                      .+|++|...|..-..-+ .++..-+.+|..++. |+        ....+.+..|++.|..+-.  -+.+.+-.++|.++.
T Consensus        49 knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~-GK--------gG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~  116 (248)
T KOG4014|consen   49 KNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLA-GK--------GGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHW  116 (248)
T ss_pred             HHHHHHHHHHHhccccc-CCcHHHHHhhhhhhc-cc--------CCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhc
Confidence            45556665555543333 356667777765543 32        0223349999999998876  567888888888887


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc-c-----hH--------HHhhhhHHHHHHH
Q 010976          216 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI-V-----PA--------REKQTIVRTAISK  281 (496)
Q Consensus       216 ~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~-~-----~A--------~~~~~~~~~Ai~~  281 (496)
                      .    -....++--...+|.+++.++-.+  ++..+-++|...|..-.+- .     ++        ..-..+.+.|.++
T Consensus       117 ~----g~~~r~~dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qf  190 (248)
T KOG4014|consen  117 N----GEKDRKADPDSEKAERYMTRACDL--EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQF  190 (248)
T ss_pred             c----CcCCccCCCCcHHHHHHHHHhccC--CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHH
Confidence            6    444444444455666899988766  5778888888777644111 0     00        1124667788887


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          282 FRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       282 ~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                      --+|-++  +++.+..|+...| .+|+
T Consensus       191 a~kACel--~~~~aCAN~SrMy-klGD  214 (248)
T KOG4014|consen  191 AIKACEL--DIPQACANVSRMY-KLGD  214 (248)
T ss_pred             HHHHHhc--CChHHHhhHHHHH-HccC
Confidence            7777666  4677777777654 4553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	496
3pe3_A	723	Structure Of Human O-Glcnac Transferase And Its Com		2e-05

>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 35/163 (21%)
Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A + Y  A+E  PE   A  N A VLQ+                 L+EA   Y EA R+ 
Sbjct: 28  AVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------------LQEALMHYKEAIRIS 73
Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           PT  DA+ N    + +   ++G           A + Y +A+Q+N     A +N   ++ 
Sbjct: 74  PTFADAYSNMGNTLKEMQDVQG-----------ALQCYTRAIQINPAFADAHSNLA-SIH 121
Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 303
           + S  +P          AI+ +R A++L+ DF  A  NL   L
Sbjct: 122 KDSGNIP---------EAIASYRTALKLKPDFPDAYCNLAHCL 155

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	496
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	4e-27
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	8e-25
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	9e-21
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-19
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-16
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-19
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-18
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-15
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-12
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-19
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-15
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-14
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-18
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-12
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-18
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-17
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-15
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-16
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	9e-12
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	6e-11
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-16
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-12
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-16
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-15
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	9e-16
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	7e-15
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	7e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-16
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-15
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-14
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-15
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-15
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-13
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	6e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-15
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-14
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-14
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-15
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-14
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-14
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-12
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-12
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-10
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-14
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-11
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-14
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-13
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-13
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-11
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	9e-11
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-11
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-13
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-12
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-06
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	7e-12
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	9e-12
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-11
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	9e-10
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-10
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-07
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-08
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	6e-08
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	8e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-08
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-05
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-07
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	9e-06
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-07
2kat_A	115	Uncharacterized protein; NESG, structure, structur	4e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-07
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-06
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	9e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	7e-05
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	9e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-04
2d9v_A	130	Pleckstrin homology domain-containing protein fami	1e-04
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	4e-04

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score =  105 bits (263), Expect = 4e-27
 Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 9/140 (6%)

Query: 216 DRAKMRGRTK-EAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTI 274
               M   T+ +   L++Q  ++ E   + N      L  WG  L ELS      + + +
Sbjct: 2   PLGSMDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQM 61

Query: 275 VRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIY 334
           ++ AI+KF  A+ +      A++ +G      A  T        P E      +  +  +
Sbjct: 62  IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT--------PDETEAKHNFDLATQF 113

Query: 335 IAAAHALKPSYSVYSSALRL 354
              A   +P  + Y  +L +
Sbjct: 114 FQQAVDEQPDNTHYLKSLEM 133

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 99.5 bits (247), Expect = 8e-25
 Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 22/144 (15%)

Query: 135 QRILTF--AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK 192
            RIL F    +   N  + NP D D L  W  VL E +   S          +++EA  K
Sbjct: 13  DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHS----ISDAKQMIQEAITK 68

Query: 193 YDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN------- 245
           ++EA  + P   +A +    A +  A +     EA+  +  AT+ +++AV          
Sbjct: 69  FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 128

Query: 246 ------WNSPQ---ALNNWGLALQ 260
                   +PQ        GL   
Sbjct: 129 KSLEMTAKAPQLHAEAYKQGLGGS 152

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 89.5 bits (223), Expect = 9e-21
 Identities = 24/166 (14%), Positives = 47/166 (28%), Gaps = 25/166 (15%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A   +  A++ NP+D +ALY  A    +                 +  A +         
Sbjct: 24  ALTLFERALKENPQDPEALYWLARTQLKLGL--------------VNPALENGKTLVART 69

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P     +   + A     +     +  +   +QA    + A ++N          GL   
Sbjct: 70  PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA 129

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
            L               A +  + A+ L+ D       L  +   +
Sbjct: 130 LLGER----------DKAEASLKQALALE-DTPEIRSALAELYLSM 164

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 85.7 bits (213), Expect = 3e-19
 Identities = 18/166 (10%), Positives = 46/166 (27%), Gaps = 25/166 (15%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A +     + R P         +                      LE+A     +A R+ 
Sbjct: 58  ALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGY---LEQALSVLKDAERVN 114

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P          +  +      G   +AE        + ++A+ L  ++P+  +       
Sbjct: 115 PRYAPLHLQRGLVYALL----GERDKAEA-------SLKQALALE-DTPEIRSALAELYL 162

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
            +  +    ++      A++++  A++             + L   
Sbjct: 163 SMGRL----DE------ALAQYAKALEQAPKDLDLRVRYASALLLK 198

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 76.0 bits (188), Expect = 5e-16
 Identities = 22/155 (14%), Positives = 37/155 (23%), Gaps = 26/155 (16%)

Query: 153 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 212
                      + L                    + A   ++ A +  P   +A Y  A 
Sbjct: 2   QTAEQNPLRLGVQLYALGR--------------YDAALTLFERALKENPQDPEALYWLAR 47

Query: 213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREK- 271
                    G    A E       N +  V               A   L      RE+ 
Sbjct: 48  TQLK----LGLVNPALE-------NGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERG 96

Query: 272 QTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
           +  +  A+S  + A ++   +       G V   L
Sbjct: 97  KGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL 131

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 87.2 bits (217), Expect = 1e-19
 Identities = 32/166 (19%), Positives = 50/166 (30%), Gaps = 35/166 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A   Y  A+E +     A Y    V                     +EA   +++A R  
Sbjct: 76  ALAFYDKALELDSSAATAYYGAGNVYVVKEM--------------YKEAKDMFEKALRAG 121

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
               D FY     +        + K A           ++AV+LN N  +A   +G+ L 
Sbjct: 122 MENGDLFYMLGTVLVKL----EQPKLALP-------YLQRAVELNENDTEARFQFGMCLA 170

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
                      +     A+S+F A  +       A YN G      
Sbjct: 171 NEG-----MLDE-----ALSQFAAVTEQDPGHADAFYNAGVTYAYK 206

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 81.8 bits (203), Expect = 7e-18
 Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 35/166 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A   +  A+    E+ D  Y    VL +                  + A      A  L 
Sbjct: 110 AKDMFEKALRAGMENGDLFYMLGTVLVKLEQ--------------PKLALPYLQRAVELN 155

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
               +A + + + +++     G   EA          +    + +     A  N G+   
Sbjct: 156 ENDTEARFQFGMCLANE----GMLDEALS-------QFAAVTEQDPGHADAFYNAGVTYA 204

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
                    EK      A+     AI +Q D   A++    + +  
Sbjct: 205 YKENR----EK------ALEMLDKAIDIQPDHMLALHAKKLLGHHH 240

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 74.1 bits (183), Expect = 4e-15
 Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 31/166 (18%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           +   + ++    P                                 E+A + + +A    
Sbjct: 4   SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGD----------YEKAAEAFTKAIEEN 53

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
                 + N+A  +S         + A          Y+KA++L+ ++  A    G    
Sbjct: 54  KEDAIPYINFANLLSSV----NELERALA-------FYDKALELDSSAATAYYGAGNVYV 102

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
                     K+     A   F  A++   +     Y LGTVL  L
Sbjct: 103 VKE-----MYKE-----AKDMFEKALRAGMENGDLFYMLGTVLVKL 138

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 66.0 bits (162), Expect = 2e-12
 Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 17/121 (14%)

Query: 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 245
           +  +   +  ++ L P               R    G  ++A E        + KA++ N
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAE-------AFTKAIEEN 53

Query: 246 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 305
                   N+   L  ++ +    E+      A++ +  A++L      A Y  G V   
Sbjct: 54  KEDAIPYINFANLLSSVNEL----ER------ALAFYDKALELDSSAATAYYGAGNVYVV 103

Query: 306 L 306
            
Sbjct: 104 K 104

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 84.4 bits (210), Expect = 3e-19
 Identities = 16/166 (9%), Positives = 41/166 (24%), Gaps = 35/166 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A        + +  D D   +  +   ++                ++   +  + +    
Sbjct: 27  AVMLLEQVYDADAFDVDVALHLGIAYVKTGA--------------VDRGTELLERSLADA 72

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P          +          +   A            K  + N  +       G+AL 
Sbjct: 73  PDNVKVATVLGLTYVQV----QKYDLAVP-------LLIKVAEANPINFNVRFRLGVALD 121

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
            L       ++      AI  F+ A+ L+ +  +    +      +
Sbjct: 122 NLGRF----DE------AIDSFKIALGLRPNEGKVHRAIAFSYEQM 157

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 72.1 bits (178), Expect = 5e-15
 Identities = 17/159 (10%), Positives = 46/159 (28%), Gaps = 35/159 (22%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
             +    ++   P++        L   +                  + A     +     
Sbjct: 61  GTELLERSLADAPDNVKVATVLGLTYVQVQK--------------YDLAVPLLIKVAEAN 106

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P   +  +   +A+ +     GR  EA +       +++ A+ L  N  +       + +
Sbjct: 107 PINFNVRFRLGVALDNL----GRFDEAID-------SFKIALGLRPNEGKVHRAIAFSYE 155

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL 299
           ++       E+      A+  F+ A +L       +  +
Sbjct: 156 QMGRH----EE------ALPHFKKANELDEGASVELALV 184

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 70.6 bits (174), Expect = 2e-14
 Identities = 14/121 (11%), Positives = 30/121 (24%), Gaps = 21/121 (17%)

Query: 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 245
             +A    ++         D   +  IA        G      E         E+++   
Sbjct: 24  YSQAVMLLEQVYDADAFDVDVALHLGIAYVK----TGAVDRGTE-------LLERSLADA 72

Query: 246 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 305
            ++ +     GL   ++       +       A+       +         + LG  L  
Sbjct: 73  PDNVKVATVLGLTYVQVQKY----DL------AVPLLIKVAEANPINFNVRFRLGVALDN 122

Query: 306 L 306
           L
Sbjct: 123 L 123

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 56.3 bits (137), Expect = 2e-09
 Identities = 20/120 (16%), Positives = 35/120 (29%), Gaps = 28/120 (23%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A        E NP +++  +   + L                    +EA   +  A  L 
Sbjct: 95  AVPLLIKVAEANPINFNVRFRLGVALDNLGR--------------FDEAIDSFKIALGLR 140

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P         A +        GR +EA         +++KA +L+     A     L  +
Sbjct: 141 PNEGKVHRAIAFSYEQM----GRHEEALP-------HFKKANELD---EGASVELALVPR 186

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 54.8 bits (133), Expect = 5e-09
 Identities = 10/86 (11%), Positives = 25/86 (29%), Gaps = 10/86 (11%)

Query: 221 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS 280
           +G +      + QA    E+    +        + G+A  +  A+    ++         
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAV----DR------GTE 63

Query: 281 KFRAAIQLQFDFHRAIYNLGTVLYGL 306
               ++    D  +    LG     +
Sbjct: 64  LLERSLADAPDNVKVATVLGLTYVQV 89

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 87.2 bits (217), Expect = 8e-19
 Identities = 36/166 (21%), Positives = 49/166 (29%), Gaps = 35/166 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A   Y  AIE  P    A  N   V     +              +  A   +++A  L 
Sbjct: 154 AKACYLKAIETQPNFAVAWSNLGCVFNAQGE--------------IWLAIHHFEKAVTLD 199

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P   DA+ N    + +          A          Y +A+ L+ N      N      
Sbjct: 200 PNFLDAYINLGNVLKEA----RIFDRAVA-------AYLRALSLSPNHAVVHGNLACVYY 248

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
           E   I            AI  +R AI+LQ  F  A  NL   L   
Sbjct: 249 EQGLI----------DLAIDTYRRAIELQPHFPDAYCNLANALKEK 284

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 84.5 bits (210), Expect = 7e-18
 Identities = 38/166 (22%), Positives = 60/166 (36%), Gaps = 35/166 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A   Y  A+  +P       N A V  E                 ++ A   Y  A  L 
Sbjct: 222 AVAAYLRALSLSPNHAVVHGNLACVYYEQGL--------------IDLAIDTYRRAIELQ 267

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P   DA+ N A A+ ++    G   EAE+        Y  A++L      +LNN     +
Sbjct: 268 PHFPDAYCNLANALKEK----GSVAEAED-------CYNTALRLCPTHADSLNNLANIKR 316

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
           E         ++     A+  +R A+++  +F  A  NL +VL   
Sbjct: 317 EQG-----NIEE-----AVRLYRKALEVFPEFAAAHSNLASVLQQQ 352

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 83.4 bits (207), Expect = 1e-17
 Identities = 39/166 (23%), Positives = 57/166 (34%), Gaps = 35/166 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A + Y +A+   P+  D   N A  L  + D              +E A + Y  A +  
Sbjct: 86  AIEHYRHALRLKPDFIDGYINLAAALVAAGD--------------MEGAVQAYVSALQYN 131

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P L+    +    +       GR +EA+         Y KA++   N   A +N G    
Sbjct: 132 PDLYCVRSDLGNLLKAL----GRLEEAKA-------CYLKAIETQPNFAVAWSNLGCVFN 180

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
               I            AI  F  A+ L  +F  A  NLG VL   
Sbjct: 181 AQGEI----------WLAIHHFEKAVTLDPNFLDAYINLGNVLKEA 216

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 80.7 bits (200), Expect = 1e-16
 Identities = 42/166 (25%), Positives = 63/166 (37%), Gaps = 35/166 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A   Y  AIE  P   DA  N A  L+E                 + EA   Y+ A RLC
Sbjct: 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGS--------------VAEAEDCYNTALRLC 301

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           PT  D+  N A    ++    G  +EA          Y KA+++      A +N    LQ
Sbjct: 302 PTHADSLNNLANIKREQ----GNIEEAVR-------LYRKALEVFPEFAAAHSNLASVLQ 350

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
           +   +          + A+  ++ AI++   F  A  N+G  L  +
Sbjct: 351 QQGKL----------QEALMHYKEAIRISPTFADAYSNMGNTLKEM 386

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 79.1 bits (196), Expect = 3e-16
 Identities = 25/166 (15%), Positives = 53/166 (31%), Gaps = 35/166 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A +       + P++   L   + +  +                 L+ +      A +  
Sbjct: 18  AERHCMQLWRQEPDNTGVLLLLSSIHFQCRR--------------LDRSAHFSTLAIKQN 63

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P L +A+ N            G   +     ++A ++Y  A++L  +      N   AL 
Sbjct: 64  PLLAEAYSN-----------LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALV 112

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
                     +      A+  + +A+Q   D +    +LG +L  L
Sbjct: 113 AAG-----DMEG-----AVQAYVSALQYNPDLYCVRSDLGNLLKAL 148

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 66.0 bits (162), Expect = 6e-12
 Identities = 21/121 (17%), Positives = 36/121 (29%), Gaps = 21/121 (17%)

Query: 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 245
            E A +   +  R  P         +           R   +             A++ N
Sbjct: 15  FEAAERHCMQLWRQEPDNTGVLLLLSSI----HFQCRRLDRSAHF-------STLAIKQN 63

Query: 246 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 305
               +A +N G   +E   +          + AI  +R A++L+ DF     NL   L  
Sbjct: 64  PLLAEAYSNLGNVYKERGQL----------QEAIEHYRHALRLKPDFIDGYINLAAALVA 113

Query: 306 L 306
            
Sbjct: 114 A 114

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 85.4 bits (211), Expect = 6e-18
 Identities = 25/205 (12%), Positives = 56/205 (27%), Gaps = 28/205 (13%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A   +  A+E+ P++ +     A+      +               + A     +A RL 
Sbjct: 157 AKVCFEKALEKKPKNPEFTSGLAIASYRLDNW-----------PPSQNAIDPLRQAIRLN 205

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P         A+ +    +      E E+L        E+A++        L +     +
Sbjct: 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKL-------VEEALEKAPGVTDVLRSAAKFYR 258

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPR 320
                    +K      AI   + A++   +       +G          +         
Sbjct: 259 RKDEP----DK------AIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYG 308

Query: 321 EVSPNELYSQSAIYIAAAHALKPSY 345
           +    EL   +  ++  A     + 
Sbjct: 309 KRKLLELIGHAVAHLKKADEANDNL 333

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 65.0 bits (158), Expect = 2e-11
 Identities = 22/175 (12%), Positives = 43/175 (24%), Gaps = 35/175 (20%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
             K    A+E+ P   D L + A   +   +               ++A +   +A    
Sbjct: 232 GEKLVEEALEKAPGVTDVLRSAAKFYRRKDE--------------PDKAIELLKKALEYI 277

Query: 201 PTLHDAFYNWAIA--------ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL 252
           P                    ++ R       ++  EL   A  + +KA + N N  +  
Sbjct: 278 PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVC 337

Query: 253 NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI---YNLGTVLY 304
           +                E+      A   F+     +             G    
Sbjct: 338 SILASLHALADQY----EE------AEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 60.0 bits (145), Expect = 8e-10
 Identities = 31/202 (15%), Positives = 56/202 (27%), Gaps = 37/202 (18%)

Query: 144 RYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 203
           +  +A +          N+A V                    L +     D+   +C   
Sbjct: 82  QQEHADQAEIRSLVTWGNYAWVYYHMGR--------------LSDVQIYVDKVKHVCEKF 127

Query: 204 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 263
               Y       D  +   R K      ++A   +EKA++    +P+  +   +A   L 
Sbjct: 128 SSP-YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL- 185

Query: 264 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVS 323
                 +     + AI   R AI+L  D       L   L+ + E+              
Sbjct: 186 ------DNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREE-------------- 225

Query: 324 PNELYSQSAIYIAAAHALKPSY 345
             E   +    +  A    P  
Sbjct: 226 -GEEEGEGEKLVEEALEKAPGV 246

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 50.7 bits (121), Expect = 7e-07
 Identities = 22/183 (12%), Positives = 46/183 (25%), Gaps = 41/183 (22%)

Query: 135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYD 194
             ++  A      A E N   +      A +   +                 EEA   + 
Sbjct: 313 LELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ--------------YEEAEYYFQ 358

Query: 195 EATRLCPT---LHDAFYNW-------------AIAISDRA-KMRGRTKEAEELWKQATKN 237
           +      T          +             AI       K+  +++E E++  +  K 
Sbjct: 359 KEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKI 418

Query: 238 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 297
            +  +  N    +AL+      +        + +Q     A       ++       A  
Sbjct: 419 AKMRLSKNGADSEALHVLAFLQELN-----EKMQQ-----ADEDSERGLESGSLIPSASS 468

Query: 298 NLG 300
             G
Sbjct: 469 WNG 471

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 81.9 bits (203), Expect = 1e-17
 Identities = 21/170 (12%), Positives = 41/170 (24%), Gaps = 35/170 (20%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
             + Y + +            +  +L +                    A ++Y  A    
Sbjct: 59  DIETYFSKVNATKAKSADFEYYGKILMKKGQ--------------DSLAIQQYQAAVDRD 104

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
            T  D +              G     +  +  A +  EK ++     P+     G A  
Sbjct: 105 TTRLDMYGQ-----------IGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 310
                     K      A S F   ++L+ + +               DT
Sbjct: 154 YNKEY----VK------ADSSFVKVLELKPNIYIGYLWRARANAAQDPDT 193

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 75.0 bits (185), Expect = 3e-15
 Identities = 21/168 (12%), Positives = 34/168 (20%), Gaps = 32/168 (19%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A + +     +           A+   E A             A   +  + Y       
Sbjct: 22  AIEVFNKLEAKKYNSPYIYNRRAVCYYELAKY---------DLAQ--KDIETYFSKVNAT 70

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
                 F              G+    +     A + Y+ AV  +          G    
Sbjct: 71  KAKSADFEY-----------YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY 119

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 308
                            AI      I+      +  Y LG   Y   E
Sbjct: 120 NKG-----NFPL-----AIQYMEKQIRPTTTDPKVFYELGQAYYYNKE 157

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 19/164 (11%), Positives = 44/164 (26%), Gaps = 26/164 (15%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A +     I     D    Y        + +                +A   + +   L 
Sbjct: 127 AIQYMEKQIRPTTTDPKVFYELGQAYYYNKE--------------YVKADSSFVKVLELK 172

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK-NYEKAVQLNWNSPQALNNWGLAL 259
           P ++  +   A A + +     +   A+  +++  +       +      +A        
Sbjct: 173 PNIYIGYLWRARANAAQ-DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231

Query: 260 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 303
                    R+K      A + ++  + L     +AI  L   L
Sbjct: 232 TIN------RDKVK----ADAAWKNILALDPTNKKAIDGLKMKL 265

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 17/150 (11%), Positives = 43/150 (28%), Gaps = 32/150 (21%)

Query: 157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISD 216
           D  + +A  L ++ +                EA + +++           +   A+   +
Sbjct: 4   DVEFRYADFLFKNNN--------------YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE 49

Query: 217 RAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVR 276
                 +   A++      + Y   V            +G  L +       ++      
Sbjct: 50  ----LAKYDLAQK----DIETYFSKVNATKAKSADFEYYGKILMKK-----GQDSL---- 92

Query: 277 TAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
            AI +++AA+            +G+  Y  
Sbjct: 93  -AIQQYQAAVDRDTTRLDMYGQIGSYFYNK 121

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 14/123 (11%), Positives = 34/123 (27%), Gaps = 16/123 (13%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A   +   +E  P  Y      A        +                A   Y++   +C
Sbjct: 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQG-----------LAKPYYEKLIEVC 209

Query: 201 PTLHDAFY-NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 259
                 +      A    A      ++  +    A   ++  + L+  + +A++   + L
Sbjct: 210 APGGAKYKDELIEANEYIAYYYTINRDKVK----ADAAWKNILALDPTNKKAIDGLKMKL 265

Query: 260 QEL 262
           +  
Sbjct: 266 EHH 268

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 22/166 (13%), Positives = 49/166 (29%), Gaps = 32/166 (19%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A     +A++ +P++  A    A + Q                   ++A + + +A  + 
Sbjct: 27  ATASIEDALKSDPKNELAWLVRAEIYQYLKV--------------NDKAQESFRQALSIK 72

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P   +   N+   +  R     R  E+   + +A  +             A  N G+   
Sbjct: 73  PDSAEINNNYGWFLCGRL---NRPAESMAYFDKALAD-----PTYPTPYIANLNKGICSA 124

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
           +       +        A +  + ++  Q  F  A   L       
Sbjct: 125 KQ-----GQFGL-----AEAYLKRSLAAQPQFPPAFKELARTKMLA 160

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 63.8 bits (156), Expect = 9e-12
 Identities = 22/171 (12%), Positives = 44/171 (25%), Gaps = 36/171 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-- 198
           A + +  A+   P+  +   N+   L    +                E+   +D+A    
Sbjct: 61  AQESFRQALSIKPDSAEINNNYGWFLCGRLNR-------------PAESMAYFDKALADP 107

Query: 199 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 258
             PT + A  N  I     +  +G+   AE          ++++      P A       
Sbjct: 108 TYPTPYIANLNKGIC----SAKQGQFGLAEA-------YLKRSLAAQPQFPPAFKELART 156

Query: 259 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 309
                 +  A             F+               LG  +     +
Sbjct: 157 KMLAGQLGDADY----------YFKKYQSRVEVLQADDLLLGWKIAKALGN 197

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 61.5 bits (150), Expect = 6e-11
 Identities = 22/159 (13%), Positives = 48/159 (30%), Gaps = 36/159 (22%)

Query: 150 ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN 209
           E+  +  +     A+      D                +A    ++A +  P    A+  
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQD--------------YRQATASIEDALKSDPKNELAWLV 47

Query: 210 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAR 269
            A       +      +A+E       ++ +A+ +  +S +  NN+G  L         R
Sbjct: 48  RAEIY----QYLKVNDKAQE-------SFRQALSIKPDSAEINNNYGWFLCGRL----NR 92

Query: 270 EKQTIVRTAISKFRAAIQLQF--DFHRAIYNLGTVLYGL 306
             +     +++ F  A+        + A  N G      
Sbjct: 93  PAE-----SMAYFDKALADPTYPTPYIANLNKGICSAKQ 126

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 75.1 bits (186), Expect = 1e-16
 Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 36/156 (23%)

Query: 152 NPEDY-DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 210
           +P +  +A YN      +  D               +EA + Y +A  L P   +A+YN 
Sbjct: 4   DPGNSAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPNNAEAWYNL 49

Query: 211 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE 270
             A   +    G   EA E        Y+KA++L+ N+ +A  N G A  +        +
Sbjct: 50  GNAYYKQ----GDYDEAIE-------YYQKALELDPNNAEAWYNLGNAYYKQGDY----D 94

Query: 271 KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
           +      AI  ++ A++L  +   A  NLG      
Sbjct: 95  E------AIEYYQKALELDPNNAEAKQNLGNAKQKQ 124

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 62.4 bits (153), Expect = 3e-12
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 25/122 (20%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A + Y  A+E +P + +A YN      +  D               +EA + Y +A  L 
Sbjct: 28  AIEYYQKALELDPNNAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELD 73

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P   +A+YN   A       +G   EA E        Y+KA++L+ N+ +A  N G A Q
Sbjct: 74  PNNAEAWYNLGNAYYK----QGDYDEAIE-------YYQKALELDPNNAEAKQNLGNAKQ 122

Query: 261 EL 262
           + 
Sbjct: 123 KQ 124

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 80.4 bits (198), Expect = 2e-16
 Identities = 22/169 (13%), Positives = 56/169 (33%), Gaps = 22/169 (13%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A   ++ A+     +  +L N ++VL++   +     +       + ++ ++   A ++ 
Sbjct: 156 AHTCFSGALTHCK-NKVSLQNLSMVLRQLQTD-----SGDEHSRHVMDSVRQAKLAVQMD 209

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW---NSPQALNNWGL 257
                ++Y    A        G+  +     +QA   Y +A +++    ++P    N   
Sbjct: 210 VLDGRSWYILGNAYLSLYFNTGQNPKI---SQQALSAYAQAEKVDRKASSNPDLHLNRAT 266

Query: 258 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
             +   +             A+  F  A  L   +         +L  L
Sbjct: 267 LHKYEESY----------GEALEGFSQAAALDPAWPEPQQREQQLLEFL 305

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 75.8 bits (186), Expect = 6e-15
 Identities = 29/175 (16%), Positives = 54/175 (30%), Gaps = 26/175 (14%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
             ++    +     +  AL      L  + D                EA     +A +L 
Sbjct: 87  TLQQMEEVLGSAQVEAQALMLKGKALNVTPD-------------YSPEAEVLLSKAVKLE 133

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P L +A+         +    G    A          +  A+    N   +L N  + L+
Sbjct: 134 PELVEAWNQLGEVYWKK----GDVTSAHT-------CFSGALTHCKNKV-SLQNLSMVLR 181

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG 315
           +L       E    V  ++ + + A+Q+     R+ Y LG     L  +T +   
Sbjct: 182 QLQTD-SGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPK 235

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 67.3 bits (164), Expect = 4e-12
 Identities = 33/203 (16%), Positives = 61/203 (30%), Gaps = 23/203 (11%)

Query: 108 HQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQ 167
           H  +         + S+TG  + GR          +   + +++     D LY +     
Sbjct: 8   HHHSSGLVPRGSHMASMTGGQQMGRGSMMA--DEEEEAKHVLQKLQGLVDRLYCFRDSYF 65

Query: 168 ESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEA 227
           E+                +E+  ++ +E          A      A++        + EA
Sbjct: 66  ETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPD---YSPEA 122

Query: 228 EELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 287
           E           KAV+L     +A N  G    +                A + F  A+ 
Sbjct: 123 EV-------LLSKAVKLEPELVEAWNQLGEVYWKK-----GDVTS-----AHTCFSGALT 165

Query: 288 LQFDFHRAIYNLGTVLYGLAEDT 310
              +   ++ NL  VL  L  D+
Sbjct: 166 HCKN-KVSLQNLSMVLRQLQTDS 187

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 80.2 bits (198), Expect = 3e-16
 Identities = 21/166 (12%), Positives = 45/166 (27%), Gaps = 26/166 (15%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A K +  A E +PE+       A +                     ++    + EA R  
Sbjct: 323 AGKDFDKAKELDPENIFPYIQLACLAYRENK--------------FDDCETLFSEAKRKF 368

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P   +                      +  + +A K Y+ A++L              + 
Sbjct: 369 PEAPEVPNF-----------FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG 417

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
           + + +      +  +  A +    A +L     +A   L  +    
Sbjct: 418 KATLLTRNPTVENFIE-ATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 76.7 bits (189), Expect = 4e-15
 Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 36/166 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A +    AIE  P   ++    AL++ +  D                E    +D+A +L 
Sbjct: 256 AHEDIKKAIELFP-RVNSYIYMALIMADRND--------------STEYYNYFDKALKLD 300

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
                 +Y+           RG+     + + QA K+++KA +L+  +            
Sbjct: 301 SNNSSVYYH-----------RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAY 349

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
             +      +         + F  A +   +          +L   
Sbjct: 350 RENKF----DD------CETLFSEAKRKFPEAPEVPNFFAEILTDK 385

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 26/160 (16%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
               ++ A  + PE  +    +A +L +  D               ++A K+YD A  L 
Sbjct: 357 CETLFSEAKRKFPEAPEVPNFFAEILTDKND--------------FDKALKQYDLAIELE 402

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
             L   +   A  +     +        E + +AT   EKA +L+  S QA         
Sbjct: 403 NKLDGIYVGIAPLVGKATLLT--RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKL 460

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 300
           +         +   +  AI+ F  +  L       +  + 
Sbjct: 461 QQ--------ED--IDEAITLFEESADLARTMEEKLQAIT 490

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 16/121 (13%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A K+Y  AIE   +        A ++ ++     L      ++    EA    ++A++L 
Sbjct: 391 ALKQYDLAIELENKLDGIYVGIAPLVGKAT---LLTRNPTVEN--FIEATNLLEKASKLD 445

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P    A                + K  +E   +A   +E++  L     + L     A  
Sbjct: 446 PRSEQAKIG-----------LAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEA 494

Query: 261 E 261
            
Sbjct: 495 A 495

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 15/111 (13%), Positives = 30/111 (27%), Gaps = 26/111 (23%)

Query: 152 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 211
             +   AL +       +                 ++A K Y+ A  L       + N  
Sbjct: 2   KDKYALALKDKGNQFFRNKK--------------YDDAIKYYNWALELKED-PVFYSN-- 44

Query: 212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL 262
                          +    K+  +   KA++L  +  + L     A + L
Sbjct: 45  ---------LSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 18/167 (10%), Positives = 41/167 (24%), Gaps = 13/167 (7%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
                  A     E            ++          S       E     YDE+    
Sbjct: 129 KFGDIDTATATPTELSTQPAK-ERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEAD 187

Query: 201 PTLHDAFYNWAIAISDRAKMRGRT-KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 259
             L +   N      +       +  +A  L+++      +  +L      +L + G+  
Sbjct: 188 KELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247

Query: 260 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
              +              A    + AI+L    + +   +  ++   
Sbjct: 248 FLKNDP----------LGAHEDIKKAIELFPRVN-SYIYMALIMADR 283

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 24/193 (12%), Positives = 52/193 (26%), Gaps = 27/193 (13%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQE-----------SADNVSLDSTSPSKDALL--- 186
             +    A+E  P+    L   A   +            S  +++ D    S + +L   
Sbjct: 58  VVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERN 117

Query: 187 ---------EEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ--AT 235
                    +E     D AT     L            +             ++K     
Sbjct: 118 LNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTF 177

Query: 236 KNYEKAVQLNWNSPQALNNWGLALQE--LSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 293
            NY+++ + +      L+N      E    A     +   +    + K     +L+    
Sbjct: 178 ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237

Query: 294 RAIYNLGTVLYGL 306
            ++ + G   +  
Sbjct: 238 ISLEHTGIFKFLK 250

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 14/81 (17%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A      A + +P    A    A +  +  D              ++EA   ++E+  L 
Sbjct: 434 ATNLLEKASKLDPRSEQAKIGLAQMKLQQED--------------IDEAITLFEESADLA 479

Query: 201 PTLHDAFYNWAIAISDRAKMR 221
            T+ +       A + + + R
Sbjct: 480 RTMEEKLQAITFAEAAKVQQR 500

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 77.8 bits (192), Expect = 9e-16
 Identities = 17/168 (10%), Positives = 40/168 (23%), Gaps = 27/168 (16%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
                  AI ++P D +A     +   E+ +               + A         L 
Sbjct: 84  TILFMEAAILQDPGDAEAWQFLGITQAENEN--------------EQAAIVALQRCLELQ 129

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P    A                 +       + A +  +  ++ N      + N   +  
Sbjct: 130 PNNLKALMA-----------LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPG 178

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI--YNLGTVLYGL 306
               +  +    +++      +  A     D         LG + +  
Sbjct: 179 LTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 75.1 bits (185), Expect = 7e-15
 Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 27/168 (16%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A +   N I++NP+    + N       +       S SP   ++LE   + Y EA    
Sbjct: 152 ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRM----SKSPVDSSVLEGVKELYLEAAHQN 207

Query: 201 PTLHDAF--YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 258
             + D        +         G    A +        +  A+ +        N  G  
Sbjct: 208 GDMIDPDLQTGLGVLFHLS----GEFNRAID-------AFNAALTVRPEDYSLWNRLGAT 256

Query: 259 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
           L         R ++     A+  +  A+++Q  F R+ YNLG     L
Sbjct: 257 LANGD-----RSEE-----AVEAYTRALEIQPGFIRSRYNLGISCINL 294

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 72.0 bits (177), Expect = 7e-14
 Identities = 32/205 (15%), Positives = 63/205 (30%), Gaps = 37/205 (18%)

Query: 141 AAKRYANAIERNPE--DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR 198
             + Y  A  +N +  D D      ++   S +                 A   ++ A  
Sbjct: 196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE--------------FNRAIDAFNAALT 241

Query: 199 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 258
           + P  +  +      +++      R++EA E        Y +A+++     ++  N G++
Sbjct: 242 VRPEDYSLWNRLGATLANG----DRSEEAVE-------AYTRALEIQPGFIRSRYNLGIS 290

Query: 259 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVN 318
              L A           R A+S F  A+ LQ             + G     LR   ++ 
Sbjct: 291 CINLGAY----------REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLM 340

Query: 319 PREVSPNELYSQSAIYIAAAHALKP 343
            +              +  A  L P
Sbjct: 341 DQPELFQAANLGDLDVLLRAFNLDP 365

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 30/234 (12%), Positives = 57/234 (24%), Gaps = 40/234 (17%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A     +  E   +        A     S +  + +         +  + K Y   T   
Sbjct: 8   AKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQN------QVTVSASEKGYYFHTENP 61

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
                  +   +         G                E A+  +    +A    G+   
Sbjct: 62  FKDWPGAFEEGLKRLKE----GDLPVTILF-------MEAAILQDPGDAEAWQFLGITQA 110

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL-----AEDTLRTGG 315
           E        E+      AI   +  ++LQ +  +A+  L            A + L+   
Sbjct: 111 ENE-----NEQA-----AIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWI 160

Query: 316 TVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYL 369
             NP+      L             +  S    S    +        YL+A + 
Sbjct: 161 KQNPKYK---YLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL-----YLEAAHQ 206

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 77.3 bits (191), Expect = 9e-16
 Identities = 22/167 (13%), Positives = 42/167 (25%), Gaps = 22/167 (13%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDA-LLEEACKKYDEATRL 199
           A       +   P+             +  D                 E       A  +
Sbjct: 108 ALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM 167

Query: 200 CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 259
            P       +            G        +  A  N  +AV+L  +  Q  N  G  L
Sbjct: 168 NPNDAQLHAS-----------LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATL 216

Query: 260 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
              +     R ++     A+  +  A+ +   + R +YN+      +
Sbjct: 217 ANGN-----RPQE-----ALDAYNRALDINPGYVRVMYNMAVSYSNM 253

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 76.9 bits (190), Expect = 1e-15
 Identities = 24/172 (13%), Positives = 46/172 (26%), Gaps = 35/172 (20%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
                  A+E NP D     +  ++   S +               + A      A  L 
Sbjct: 157 CRTLLHAALEMNPNDAQLHASLGVLYNLSNN--------------YDSAAANLRRAVELR 202

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P     +      +++      R +EA +        Y +A+ +N    + + N  ++  
Sbjct: 203 PDDAQLWNKLGATLANG----NRPQEALD-------AYNRALDINPGYVRVMYNMAVSYS 251

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLR 312
            +S              A  +   AI +Q                   D  R
Sbjct: 252 NMSQY----------DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFR 293

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 20/171 (11%), Positives = 41/171 (23%), Gaps = 30/171 (17%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           AA  +    +  PE  +A  +  L   E+                   A    + A  L 
Sbjct: 40  AALAFEAVCQAAPEREEAWRSLGLTQAENEK--------------DGLAIIALNHARMLD 85

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P                      +   E     A  +    +       Q  +    A  
Sbjct: 86  PKDIAVHAA-----------LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADV 134

Query: 261 ELSAIVPAREKQTIVRT-----AISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
           ++  +    E              +   AA+++  +  +   +LG +    
Sbjct: 135 DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS 185

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 18/177 (10%), Positives = 43/177 (24%), Gaps = 35/177 (19%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
               Y          ++      L + + A+              L EA   ++   +  
Sbjct: 6   NNTDYPFEANNPYMYHENPMEEGLSMLKLAN--------------LAEAALAFEAVCQAA 51

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P   +A+ +            G T+   E    A      A  L+           ++  
Sbjct: 52  PEREEAWRS-----------LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTV 317
                            A++  RA +  Q  + +           + +  +++    
Sbjct: 101 NEHNA----------NAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFF 147

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 18/132 (13%), Positives = 30/132 (22%), Gaps = 26/132 (19%)

Query: 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 245
           + +    Y          H+      +++           EA          +E   Q  
Sbjct: 3   MLQNNTDYPFEANNPYMYHENPMEEGLSMLKL----ANLAEAAL-------AFEAVCQAA 51

Query: 246 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 305
               +A  + GL   E       ++       AI     A  L          L      
Sbjct: 52  PEREEAWRSLGLTQAENE-----KDGL-----AIIALNHARMLDPKDIAVHAALAVSHTN 101

Query: 306 L-----AEDTLR 312
                 A  +LR
Sbjct: 102 EHNANAALASLR 113

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 26/166 (15%), Positives = 54/166 (32%), Gaps = 33/166 (19%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A      A+E +P   DA    A+V Q   +               + A ++Y +A    
Sbjct: 56  AKVPLRKALEIDPSSADAHAALAVVFQTEME--------------PKLADEEYRKALASD 101

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
                   N+   + +    + R +EA +   +A+++      L     +   N GL   
Sbjct: 102 SRNARVLNNYGGFLYE----QKRYEEAYQRLLEASQD-----TLYPERSRVFENLGLVSL 152

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
           ++        +      A   F  +++L  +       +  +LY  
Sbjct: 153 QMKKP----AQ------AKEYFEKSLRLNRNQPSVALEMADLLYKE 188

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 73.1 bits (180), Expect = 8e-15
 Identities = 38/222 (17%), Positives = 64/222 (28%), Gaps = 52/222 (23%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
             +      +   E  DA     L   +  +               E+A     +A  + 
Sbjct: 22  GDQNPLKTDKGRDEARDAYIQLGLGYLQRGN--------------TEQAKVPLRKALEID 67

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P+  DA    A+            K A+E        Y KA+  +  + + LNN+G  L 
Sbjct: 68  PSSADAHAALAVVFQT----EMEPKLADE-------EYRKALASDSRNARVLNNYGGFLY 116

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQF--DFHRAIYNLGTVLYGL-----AEDTLRT 313
           E       R ++     A  +   A Q     +  R   NLG V   +     A++    
Sbjct: 117 EQK-----RYEE-----AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEK 166

Query: 314 GGTVNPREVSP-NEL---------YSQSAIYIAAAHALKPSY 345
              +N  + S   E+         Y  +  Y           
Sbjct: 167 SLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 31/168 (18%), Positives = 55/168 (32%), Gaps = 37/168 (22%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-- 198
           A + Y  A+  +  +   L N+   L E                  EEA ++  EA++  
Sbjct: 90  ADEEYRKALASDSRNARVLNNYGGFLYEQKR--------------YEEAYQRLLEASQDT 135

Query: 199 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 258
           L P     F N  +     +    +  +A+E        +EK+++LN N P         
Sbjct: 136 LYPERSRVFENLGLV----SLQMKKPAQAKE-------YFEKSLRLNRNQPSVALEMADL 184

Query: 259 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
           L +    VPAR+           +    Q      R++     +    
Sbjct: 185 LYKEREYVPARQ----------YYDLFAQGGGQNARSLLLGIRLAKVF 222

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 22/155 (14%), Positives = 45/155 (29%), Gaps = 38/155 (24%)

Query: 152 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 211
               +   ++  LV + S                     +   +  +      DA+    
Sbjct: 2   GSSHHHHHHSSGLVPRGS-----------------HMGDQNPLKTDKGRDEARDAYIQLG 44

Query: 212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREK 271
           +    R    G T++A+           KA++++ +S  A     +  Q           
Sbjct: 45  LGYLQR----GNTEQAKV-------PLRKALEIDPSSADAHAALAVVFQTEMEP------ 87

Query: 272 QTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
               + A  ++R A+       R + N G  LY  
Sbjct: 88  ----KLADEEYRKALASDSRNARVLNNYGGFLYEQ 118

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 12/76 (15%), Positives = 19/76 (25%), Gaps = 10/76 (13%)

Query: 233 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 292
              +N  K  +    +  A    GL   +                A    R A+++    
Sbjct: 21  MGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNT----------EQAKVPLRKALEIDPSS 70

Query: 293 HRAIYNLGTVLYGLAE 308
             A   L  V     E
Sbjct: 71  ADAHAALAVVFQTEME 86

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 78.3 bits (193), Expect = 1e-15
 Identities = 23/166 (13%), Positives = 39/166 (23%), Gaps = 35/166 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
                  A    P+   A+ +     Q                  ++       +A  L 
Sbjct: 227 LLPVLCQAHGLTPQQVVAIASNGGGKQALET--------------VQRLLPVLCQAHGLT 272

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P    A  +               K+A E  ++      +A  L      A+ + G   Q
Sbjct: 273 PQQVVAIAS-----------NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQ 321

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
            L            V+  +     A  L      AI +       L
Sbjct: 322 ALET----------VQRLLPVLCQAHGLTPQQVVAIASHDGGKQAL 357

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 75.6 bits (186), Expect = 1e-14
 Identities = 24/162 (14%), Positives = 40/162 (24%), Gaps = 35/162 (21%)

Query: 145 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 204
              A    P+   A+ +     Q                  ++       +A  L P   
Sbjct: 333 LCQAHGLTPQQVVAIASHDGGKQALET--------------VQRLLPVLCQAHGLTPEQV 378

Query: 205 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 264
            A  +            G  K+A E  ++      +A  L      A+ +     Q L  
Sbjct: 379 VAIAS-----------NGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALET 427

Query: 265 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
                     V+  +     A  L      AI + G     L
Sbjct: 428 ----------VQRLLPVLCQAHGLTPQQVVAIASNGGGRPAL 459

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 26/166 (15%), Positives = 41/166 (24%), Gaps = 35/166 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
                  A    PE   A+ +     Q                  ++       +A  L 
Sbjct: 125 LLPVLCQAHGLTPEQVVAIASHDGGKQALET--------------VQALLPVLCQAHGLT 170

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P    A  +            G  K+A E  ++      +A  L      A+ + G   Q
Sbjct: 171 PEQVVAIAS-----------NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQ 219

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
            L            V+  +     A  L      AI + G     L
Sbjct: 220 ALET----------VQRLLPVLCQAHGLTPQQVVAIASNGGGKQAL 255

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 23/177 (12%), Positives = 44/177 (24%), Gaps = 35/177 (19%)

Query: 130 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEA 189
              + + +  +        +   PE   A+ +     Q                  ++  
Sbjct: 46  GVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALET--------------VQRL 91

Query: 190 CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP 249
                +A  L P    A  +               K+A E  ++      +A  L     
Sbjct: 92  LPVLCQAHGLTPQQVVAIAS-----------HDGGKQALETVQRLLPVLCQAHGLTPEQV 140

Query: 250 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
            A+ +     Q L            V+  +     A  L  +   AI + G     L
Sbjct: 141 VAIASHDGGKQALET----------VQALLPVLCQAHGLTPEQVVAIASNGGGKQAL 187

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 67.9 bits (166), Expect = 2e-12
 Identities = 24/161 (14%), Positives = 42/161 (26%), Gaps = 36/161 (22%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
                  A    PE   A+ +     Q                  ++       +A  L 
Sbjct: 363 LLPVLCQAHGLTPEQVVAIASNGGGKQALET--------------VQRLLPVLCQAHGLT 408

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P    A  +               K+A E  ++      +A  L      A+ + G    
Sbjct: 409 PEQVVAIAS-----------HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRP 457

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR-AIYNLG 300
            L +I             +S+   A+    + H  A+  LG
Sbjct: 458 ALESI----------VAQLSRPDPALAALTNDHLVALACLG 488

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 23/176 (13%), Positives = 45/176 (25%), Gaps = 35/176 (19%)

Query: 131 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEAC 190
            R+ + +LT A +     ++ +      +     V               + +A+     
Sbjct: 13  ARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVT--------------AVEAVHAWRN 58

Query: 191 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 250
                   L P    A  +               K+A E  ++      +A  L      
Sbjct: 59  ALTGAPLNLTPEQVVAIAS-----------HDGGKQALETVQRLLPVLCQAHGLTPQQVV 107

Query: 251 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
           A+ +     Q L            V+  +     A  L  +   AI +       L
Sbjct: 108 AIASHDGGKQALET----------VQRLLPVLCQAHGLTPEQVVAIASHDGGKQAL 153

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.1 bits (112), Expect = 9e-06
 Identities = 18/124 (14%), Positives = 27/124 (21%), Gaps = 21/124 (16%)

Query: 184 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ 243
           ALL  A +      +L                     RG     E +           + 
Sbjct: 18  ALLTVAGELRGPPLQLDTGQLLKIAK-----------RGGVTAVEAVHAWRNALTGAPLN 66

Query: 244 LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 303
           L      A+ +     Q L            V+  +     A  L      AI +     
Sbjct: 67  LTPEQVVAIASHDGGKQALET----------VQRLLPVLCQAHGLTPQQVVAIASHDGGK 116

Query: 304 YGLA 307
             L 
Sbjct: 117 QALE 120

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 75.3 bits (186), Expect = 2e-15
 Identities = 25/166 (15%), Positives = 46/166 (27%), Gaps = 36/166 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
                   IE         +  A +L +  +               E+  KK +    + 
Sbjct: 91  KLGDLKKTIEYYQ-KSLTEHRTADILTKLRN--------------AEKELKKAEAEAYVN 135

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P   +                G+    +  W  A K Y + ++      +  +N   AL 
Sbjct: 136 PEKAEEARL-----------EGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA 184

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
           +L +             AI+    AI+   +F RA     T    +
Sbjct: 185 KLMSF----------PEAIADCNKAIEKDPNFVRAYIRKATAQIAV 220

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 71.8 bits (177), Expect = 3e-14
 Identities = 21/160 (13%), Positives = 37/160 (23%), Gaps = 35/160 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
             K+       NPE  +            +D                 A K Y E  +  
Sbjct: 124 ELKKAEAEAYVNPEKAEEARLEGKEYFTKSD--------------WPNAVKAYTEMIKRA 169

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P     + N           R         + +A  +  KA++ + N  +A      A  
Sbjct: 170 PEDARGYSN-----------RAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 218

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 300
            +               A+    AA     + +       
Sbjct: 219 AVKEY----AS------ALETLDAARTKDAEVNNGSSARE 248

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 70.7 bits (174), Expect = 6e-14
 Identities = 15/168 (8%), Positives = 30/168 (17%), Gaps = 36/168 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A     +A+E+  E        +       +                       +     
Sbjct: 57  AISTLNDAVEQGREMRADYKVISKSFARIGN--------------AYHKLGDLKKTIEYY 102

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
                  +                       ++  K  E    +N    +     G    
Sbjct: 103 QK-SLTEHR-----------TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYF 150

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 308
             S              A+  +   I+   +  R   N    L  L  
Sbjct: 151 TKSDW----PN------AVKAYTEMIKRAPEDARGYSNRAAALAKLMS 188

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 65.3 bits (160), Expect = 4e-12
 Identities = 20/124 (16%), Positives = 34/124 (27%), Gaps = 25/124 (20%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A K Y   I+R PED     N A  L +                   EA    ++A    
Sbjct: 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMS--------------FPEAIADCNKAIEKD 203

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P    A+             +   + A + +  A +  + A   +       +   +   
Sbjct: 204 PNFVRAYIR-----------KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQL 252

Query: 261 ELSA 264
              A
Sbjct: 253 YYKA 256

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 50.2 bits (121), Expect = 4e-07
 Identities = 14/154 (9%), Positives = 33/154 (21%), Gaps = 37/154 (24%)

Query: 153 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 212
               D          ++                 +EA + Y++A  L         N   
Sbjct: 2   GSMADKEKAEGNKFYKARQ--------------FDEAIEHYNKAWELHKD-ITYLNN--- 43

Query: 213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQ 272
                   R   +  +  ++ A      AV+              +   +          
Sbjct: 44  --------RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGN-------- 87

Query: 273 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
                 +   +  I+  +      +    +L  L
Sbjct: 88  --AYHKLGDLKKTIEY-YQKSLTEHRTADILTKL 118

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 75.6 bits (186), Expect = 9e-15
 Identities = 21/166 (12%), Positives = 44/166 (26%), Gaps = 35/166 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
                 + ++R+PE         +                     + EA + + +++ + 
Sbjct: 358 LYLISNDLVDRHPEKAVTWLAVGIYYLCVNK--------------ISEARRYFSKSSTMD 403

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P    A+                +   E    QA   Y  A +L   +       G+   
Sbjct: 404 PQFGPAWIG-----------FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHM 452

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
           +L  I            A    +++  L       +  LG V +  
Sbjct: 453 QLGNI----------LLANEYLQSSYALFQYDPLLLNELGVVAFNK 488

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 73.3 bits (180), Expect = 6e-14
 Identities = 24/222 (10%), Positives = 50/222 (22%), Gaps = 50/222 (22%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
            A+ Y ++I    +  D L   A  L   +                 +      +   + 
Sbjct: 290 RAEDYLSSINGLEKSSDLLLCKADTLFVRSR--------------FIDVLAITTKILEID 335

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P   D +     +        G   +   +           V  +          G+   
Sbjct: 336 PYNLDVYPLHLAS----LHESGEKNKLYLI-------SNDLVDRHPEKAVTWLAVGIYYL 384

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL-----AEDTLRTGG 315
            ++ I     +      A   F  +  +   F  A                A     T  
Sbjct: 385 CVNKI----SE------ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA 434

Query: 316 TVNPREVSP-----NELYSQS----AI-YIAAAHALKPSYSV 347
            +      P      +         A  Y+ +++AL     +
Sbjct: 435 RLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPL 476

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 69.9 bits (171), Expect = 7e-13
 Identities = 16/162 (9%), Positives = 34/162 (20%), Gaps = 28/162 (17%)

Query: 145 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 204
           Y  A       +       +   +  +              +  A +    +  L     
Sbjct: 430 YTTAARLFQGTHLPYLFLGMQHMQLGN--------------ILLANEYLQSSYALFQYDP 475

Query: 205 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 264
                  +     A  +   + A   ++ A    +K             N G A ++L  
Sbjct: 476 LLLNELGVV----AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK- 530

Query: 265 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
                        AI      + L  +       +  V    
Sbjct: 531 ----MYDA-----AIDALNQGLLLSTNDANVHTAIALVYLHK 563

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 20/166 (12%), Positives = 42/166 (25%), Gaps = 28/166 (16%)

Query: 138 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEAT 197
           +  A +   ++      D   L    +V    +D              ++ A   +  A 
Sbjct: 457 ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD--------------MQTAINHFQNAL 502

Query: 198 RLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL 257
            L          WA   ++     G      +++  A     + + L+ N         L
Sbjct: 503 LLVKKTQSNEKPWAATWANL----GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIAL 558

Query: 258 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 303
                               AI+    ++ +  +   A   L   L
Sbjct: 559 VYLHKKIP----------GLAITHLHESLAISPNEIMASDLLKRAL 594

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 39/296 (13%), Positives = 88/296 (29%), Gaps = 33/296 (11%)

Query: 37  LIQPPPSTEQTEKQHPSTEQTEKQPPSTEQTLNPALRKDEGNRTFTMRELLTELKSEGED 96
           +++   +  + +   P          +      P++     N + +    LT        
Sbjct: 2   VVKRTQTDSRMQST-PGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLA 60

Query: 97  SVTDASQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILT--FAAKRYANAIERNPE 154
           + T  + G+   +   QN  ++   + +     +   +Q+     F  ++    I  NP 
Sbjct: 61  NNTS-TDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEK-VLDITGNPN 118

Query: 155 DYDAL---------YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH- 204
           D   L         Y  A  L    D  +  S      A        +  A  L    + 
Sbjct: 119 DAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNP 178

Query: 205 --------DAFYNWAIAISDRAKM---RGRTKEAEELWKQATKNYEKAVQLNWNSPQALN 253
                   +        I   A M   RG+       + +A + Y++A+ ++    +A +
Sbjct: 179 FRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238

Query: 254 NWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 309
                L     +    E   +++     +    +    F R++Y L        ++
Sbjct: 239 Q----LVSNHLLTADEEWDLVLKLN---YSTYSKEDAAFLRSLYMLKLNKTSHEDE 287

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 24/169 (14%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSL-DSTSPSKDALLEEACKKYDEATRL 199
           A +   + +   P     +         +    S     S   D+L  E  + +  A RL
Sbjct: 151 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 210

Query: 200 CPTLHDAF--YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL 257
            PT  D        +       + G   +A +        +  A+ +  N     N  G 
Sbjct: 211 DPTSIDPDVQCGLGVLF----NLSGEYDKAVD-------CFTAALSVRPNDYLLWNKLGA 259

Query: 258 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
            L   +     + ++     A++ +R A++LQ  + R+ YNLG     L
Sbjct: 260 TLANGN-----QSEE-----AVAAYRRALELQPGYIRSRYNLGISCINL 298

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 25/175 (14%), Positives = 55/175 (31%), Gaps = 38/175 (21%)

Query: 141 AAKRYANAIERNPEDYDA--LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR 198
             + +  A+  +P   D        ++   S +               ++A   +  A  
Sbjct: 200 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE--------------YDKAVDCFTAALS 245

Query: 199 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 258
           + P  +  +      +++      +++EA          Y +A++L     ++  N G++
Sbjct: 246 VRPNDYLLWNKLGATLANG----NQSEEAVA-------AYRRALELQPGYIRSRYNLGIS 294

Query: 259 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRT 313
              L A           R A+  F  A+ +Q          G  +      TLR 
Sbjct: 295 CINLGAH----------REAVEHFLEALNMQRKSRGPRGEGG-AMSENIWSTLRL 338

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 32/177 (18%), Positives = 48/177 (27%), Gaps = 32/177 (18%)

Query: 145 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP--- 201
           +  A      D D        L+E A         P      +     YD+  +      
Sbjct: 3   FERAKSAIESDVDFWDKLQAELEEMAKR--DAEAHPWLSDYDDLTSATYDKGYQFEEENP 60

Query: 202 -TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
              H   +   +         G    A  L       +E AVQ +    +A    G    
Sbjct: 61  LRDHPQPFEEGLRRLQ----EGDLPNAVLL-------FEAAVQQDPKHMEAWQYLGTTQA 109

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL-----AEDTLR 312
           E       +E       AIS  R  ++L+ D   A+  L            A + LR
Sbjct: 110 ENE-----QELL-----AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR 156

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 34/217 (15%), Positives = 65/217 (29%), Gaps = 41/217 (18%)

Query: 141 AAKRYANA---IERNPEDYDALYNWALVLQESADNVSLDSTSPSKDAL-------LEEAC 190
            AKR A A   +    +   A Y+     +E  +N   D   P ++ L       L  A 
Sbjct: 27  MAKRDAEAHPWLSDYDDLTSATYDKGYQFEE--ENPLRDHPQPFEEGLRRLQEGDLPNAV 84

Query: 191 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 250
             ++ A +  P   +A+              G T+   E    A     + ++L  ++  
Sbjct: 85  LLFEAAVQQDPKHMEAWQY-----------LGTTQAENEQELLAISALRRCLELKPDNQT 133

Query: 251 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 310
           AL    ++    S      ++Q     A    R  ++    +   +        G     
Sbjct: 134 ALMALAVSFTNES-----LQRQ-----ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP 183

Query: 311 LRTGGTVNPREVSPNELYSQSAI--YIAAAHALKPSY 345
            +        +    E         ++AA   L P+ 
Sbjct: 184 SKRILGSLLSDSLFLE-----VKELFLAAV-RLDPTS 214

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 69.3 bits (171), Expect = 2e-14
 Identities = 37/150 (24%), Positives = 57/150 (38%), Gaps = 35/150 (23%)

Query: 157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISD 216
           +A YN      +  D               +EA + Y +A  L P   +A+YN   A   
Sbjct: 2   EAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPRSAEAWYNLGNAYYK 47

Query: 217 RAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVR 276
           +    G   EA E        Y+KA++L+  S +A  N G A  +        ++     
Sbjct: 48  Q----GDYDEAIE-------YYQKALELDPRSAEAWYNLGNAYYKQGDY----DE----- 87

Query: 277 TAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
            AI  ++ A++L      A YNLG   Y  
Sbjct: 88  -AIEYYQKALELDPRSAEAWYNLGNAYYKQ 116

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 61.3 bits (150), Expect = 1e-11
 Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 35/148 (23%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A + Y  A+E +P   +A YN      +  D               +EA + Y +A  L 
Sbjct: 20  AIEYYQKALELDPRSAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELD 65

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P   +A+YN   A       +G   EA E        Y+KA++L+  S +A  N G A  
Sbjct: 66  PRSAEAWYNLGNAYYK----QGDYDEAIE-------YYQKALELDPRSAEAWYNLGNAYY 114

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQL 288
           +        ++      AI  ++ A++L
Sbjct: 115 KQGDY----DE------AIEYYQKALEL 132

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 48.5 bits (117), Expect = 3e-07
 Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 25/108 (23%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A + Y  A+E +P   +A YN      +  D               +EA + Y +A  L 
Sbjct: 54  AIEYYQKALELDPRSAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELD 99

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 248
           P   +A+YN   A       +G   EA E        Y+KA++L+  S
Sbjct: 100 PRSAEAWYNLGNAYYK----QGDYDEAIE-------YYQKALELDPRS 136

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 31/177 (17%), Positives = 52/177 (29%), Gaps = 29/177 (16%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           +   +     + P   +    +A +L +  D               + A K+YD A RL 
Sbjct: 363 SEAFFNETKLKFPTLPEVPTFFAEILTDRGD--------------FDTAIKQYDIAKRLE 408

Query: 201 PTLHDAFYNWAIAIS-----DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW 255
                        I       R   +  T+  EE +  A K   KA +L+  S QA    
Sbjct: 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGL 468

Query: 256 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLR 312
                ++  I    ++      AI  F  +  L       +           +  LR
Sbjct: 469 AQLKLQMEKI----DE------AIELFEDSAILARTMDEKLQATTFAEAAKIQKRLR 515

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 23/166 (13%), Positives = 47/166 (28%), Gaps = 36/166 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A      +I  +P   ++    AL L +  +               +E  K + +A  L 
Sbjct: 262 AQVLLQESINLHP-TPNSYIFLALTLADKEN--------------SQEFFKFFQKAVDLN 306

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P     +Y+           RG+     + +K A ++++KA  LN  +          L 
Sbjct: 307 PEYPPTYYH-----------RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
           +         +      + + F                   +L   
Sbjct: 356 KQGKF----TE------SEAFFNETKLKFPTLPEVPTFFAEILTDR 391

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 18/122 (14%), Positives = 32/122 (26%), Gaps = 29/122 (23%)

Query: 145 YANAIERNPED----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
            A     +P         L N       + +                EA K Y  A  L 
Sbjct: 10  IAQLKGLSPSQRQAYAVQLKNRGNHFFTAKN--------------FNEAIKYYQYAIELD 55

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P     + N                 +    ++  +   KA+++  +  +AL     A +
Sbjct: 56  PNEPVFYSN-----------ISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104

Query: 261 EL 262
            L
Sbjct: 105 SL 106

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 18/142 (12%), Positives = 36/142 (25%), Gaps = 24/142 (16%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDAL--LEEACKKYDEATR 198
           A K+Y  A                ++ ++       S  P++        A K   +A  
Sbjct: 397 AIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456

Query: 199 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK------------------NYEK 240
           L P    A    A           +  EA EL++ +                      +K
Sbjct: 457 LDPRSEQAKIGLAQLKLQM----EKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQK 512

Query: 241 AVQLNWNSPQALNNWGLALQEL 262
            ++ +      +       +  
Sbjct: 513 RLRADPIISAKMELTLARYRAK 534

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 53.6 bits (129), Expect = 8e-08
 Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 17/121 (14%)

Query: 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 245
                    +   L P+   A+        +         EA +        Y+ A++L+
Sbjct: 3   HMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIK-------YYQYAIELD 55

Query: 246 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 305
            N P   +N          +    EK       I     A++++ D  +A+    +    
Sbjct: 56  PNEPVFYSNISACYISTGDL----EK------VIEFTTKALEIKPDHSKALLRRASANES 105

Query: 306 L 306
           L
Sbjct: 106 L 106

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 19/166 (11%), Positives = 44/166 (26%), Gaps = 26/166 (15%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
            +K      +  P +      + +          L+ +S +  +  + A     +A +  
Sbjct: 150 LSKDEGRGSQVLPSNTSLASFFGIFDSH------LEVSSVNTSSNYDTAYALLSDALQRL 203

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
            +  D  Y  A              ++ +++            L  N+  AL   G+   
Sbjct: 204 YSATDEGYLVA---------NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF 254

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
             + +            A    + +I L      +   L   L   
Sbjct: 255 LKNNL----------LDAQVLLQESINLHPT-PNSYIFLALTLADK 289

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 36/229 (15%), Positives = 69/229 (30%), Gaps = 43/229 (18%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A K Y  AIE +P +     N +     + D              LE+  +   +A  + 
Sbjct: 44  AIKYYQYAIELDPNEPVFYSNISACYISTGD--------------LEKVIEFTTKALEIK 89

Query: 201 PTLHDAFYNWAI----------AISD----------------RAKMRGRTKEAEELWKQA 234
           P    A    A           A+ D                    R   K+A ++  + 
Sbjct: 90  PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNEN 149

Query: 235 -TKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 293
            +K+  +  Q+  ++    + +G+    L  +            A +    A+Q  +   
Sbjct: 150 LSKDEGRGSQVLPSNTSLASFFGIFDSHLE-VSSVNTSSNYDT-AYALLSDALQRLYSAT 207

Query: 294 RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK 342
              Y +   L   + D   +  + N  +    E  + +  Y    H LK
Sbjct: 208 DEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK 256

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 24/170 (14%), Positives = 50/170 (29%), Gaps = 28/170 (16%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A       I    +   A      +L +                 L+EA   + +  +  
Sbjct: 56  ALPDLTKVIALKMDFTAARLQRGHLLLKQGK--------------LDEAEDDFKKVLKSN 101

Query: 201 PTLHDAFYNWAIAI----SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG 256
           P+  +     +  +      R + +         +  A    +K +++     +      
Sbjct: 102 PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161

Query: 257 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
               +          +   R AIS  +AA +L+ D   A Y + T+ Y L
Sbjct: 162 ECFIKE--------GE--PRKAISDLKAASKLKSDNTEAFYKISTLYYQL 201

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 18/171 (10%), Positives = 42/171 (24%), Gaps = 30/171 (17%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A  ++  A++ +P++Y A Y  A V                     + A     +   L 
Sbjct: 22  ALSQFHAAVDGDPDNYIAYYRRATVFLAMGK--------------SKAALPDLTKVIALK 67

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
                A              RG     +    +A  +++K ++ N +  +        ++
Sbjct: 68  MDFTAARLQ-----------RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK 116

Query: 261 ELSAIV-----PAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
                                 AI+     +++                  
Sbjct: 117 ADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKE 167

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 17/167 (10%), Positives = 45/167 (26%), Gaps = 29/167 (17%)

Query: 145 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 204
              A +   ++ +A Y  + +  +  D               E +  +  E  +L     
Sbjct: 177 LKAASKLKSDNTEAFYKISTLYYQLGD--------------HELSLSEVRECLKLDQDHK 222

Query: 205 DAFYNWAIAIS-DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ----ALNNWGLAL 259
             F ++      ++          +  +  AT  YE  ++   +  +    +        
Sbjct: 223 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCF 282

Query: 260 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
            +         +      AI      +Q++ D   A+ +        
Sbjct: 283 SKDEKP----VE------AIRICSEVLQMEPDNVNALKDRAEAYLIE 319

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 21/163 (12%), Positives = 49/163 (30%), Gaps = 22/163 (13%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDA-LLEEACKKYDEATRL 199
           A   +   ++ NP + +     + +++             + D      A    D+   +
Sbjct: 90  AEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV 149

Query: 200 CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 259
           C    +               R      E   ++A  + + A +L  ++ +A        
Sbjct: 150 CVWDAELREL-----------RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY 198

Query: 260 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV 302
            +L       E       ++S+ R  ++L  D  R   +   V
Sbjct: 199 YQLGDH----EL------SLSEVRECLKLDQDHKRCFAHYKQV 231

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 63.4 bits (155), Expect = 4e-11
 Identities = 18/172 (10%), Positives = 45/172 (26%), Gaps = 31/172 (18%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A       +E    D +     A    +  +                +A      A++L 
Sbjct: 139 AITFLDKILEVCVWDAELRELRAECFIKEGE--------------PRKAISDLKAASKLK 184

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
               +AFY                       + +     + ++L+ +  +   ++    +
Sbjct: 185 SDNTEAFYK-----------ISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 233

Query: 261 ELSAIVPARE--KQTIVRTAISKFRAAIQLQFDF----HRAIYNLGTVLYGL 306
               I  A E  +      A SK+ + ++ +        R+   +       
Sbjct: 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 18/170 (10%), Positives = 50/170 (29%), Gaps = 27/170 (15%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           +       ++ + +      ++  V + +    S +           +A  KY+   +  
Sbjct: 207 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR--YTDATSKYESVMKTE 264

Query: 201 PTLHD----AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG 256
           P++ +    +                     +E   +A +   + +Q+  ++  AL +  
Sbjct: 265 PSVAEYTVRSKER-----------ICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313

Query: 257 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
            A           ++      AI  + AA +   +  +    L      L
Sbjct: 314 EAYLIEEMY----DE------AIQDYEAAQEHNENDQQIREGLEKAQRLL 353

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 19/149 (12%), Positives = 38/149 (25%), Gaps = 35/149 (23%)

Query: 155 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 214
           D +        L  +                L +A  ++  A    P  + A+Y      
Sbjct: 2   DVEKHLELGKKLLAAGQ--------------LADALSQFHAAVDGDPDNYIAYYR----- 42

Query: 215 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTI 274
                 R     A    K A  +  K + L  +   A    G  L +   +    ++   
Sbjct: 43  ------RATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKL----DE--- 89

Query: 275 VRTAISKFRAAIQLQFDFHRAIYNLGTVL 303
              A   F+  ++              ++
Sbjct: 90  ---AEDDFKKVLKSNPSEQEEKEAESQLV 115

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 20/106 (18%), Positives = 31/106 (29%), Gaps = 15/106 (14%)

Query: 219 KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA 278
              G+   A      A   +  AV  + ++  A          +      + K      A
Sbjct: 7   LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMG-----KSKA-----A 56

Query: 279 ISKFRAAIQLQFDFHRAIYNLGTVLYGL-----AEDTLRTGGTVNP 319
           +      I L+ DF  A    G +L        AED  +     NP
Sbjct: 57  LPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 73.7 bits (181), Expect = 4e-14
 Identities = 39/252 (15%), Positives = 61/252 (24%), Gaps = 51/252 (20%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
              +   A+   P+D+ A    A       D                           L 
Sbjct: 8   ELLQLRAAVRHRPQDFVAWLMLADAELGMGD--------------TTAGEMAVQRGLALH 53

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P   +A              + R  EA  L        ++A       P      G AL+
Sbjct: 54  PGHPEAVARLGRVR----WTQQRHAEAAVL-------LQQASDAAPEHPGIALWLGHALE 102

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT--------LR 312
           +                A + +  A QL  +       L      L +          +R
Sbjct: 103 DAGQA----------EAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVR 152

Query: 313 TGGTVNPREVSPNELYSQSA-----IYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAG 367
                    V P    S+ A     +  A   A   + SV   A   VR       L+ G
Sbjct: 153 AAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLAPTRVR---SKGPLRVG 209

Query: 368 YLTAPPAGIPVA 379
           +++      P  
Sbjct: 210 FVSNGFGAHPTG 221

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 10/87 (11%), Positives = 16/87 (18%), Gaps = 17/87 (19%)

Query: 220 MRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI 279
           M                    AV+       A      A   +                 
Sbjct: 1   MTADGPRELLQ-------LRAAVRHRPQDFVAWLMLADAELGMGDT----------TAGE 43

Query: 280 SKFRAAIQLQFDFHRAIYNLGTVLYGL 306
              +  + L      A+  LG V +  
Sbjct: 44  MAVQRGLALHPGHPEAVARLGRVRWTQ 70

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 72.4 bits (178), Expect = 8e-14
 Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 34/192 (17%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQ---------ESADNV-SLDSTSP---------- 180
           A  ++  A++ +P++Y A Y  A V                V  L               
Sbjct: 45  ALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104

Query: 181 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS----DRAKMRGRTKEAEELWKQATK 236
            K   L+EA   + +  +  P+ ++     +  I      R + +         +  A  
Sbjct: 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164

Query: 237 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI 296
             +K +++     +          +          +   R AIS  +AA +L+ D   A 
Sbjct: 165 FLDKILEVCVWDAELRELRAECFIKE--------GE--PRKAISDLKAASKLKNDNTEAF 214

Query: 297 YNLGTVLYGLAE 308
           Y + T+ Y L +
Sbjct: 215 YKISTLYYQLGD 226

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 17/167 (10%), Positives = 44/167 (26%), Gaps = 29/167 (17%)

Query: 145 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 204
              A +   ++ +A Y  + +  +  D               E +  +  E  +L     
Sbjct: 200 LKAASKLKNDNTEAFYKISTLYYQLGD--------------HELSLSEVRECLKLDQDHK 245

Query: 205 DAFYNWAIAIS-DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ----ALNNWGLAL 259
             F ++      ++          +  +  AT  YE  ++   +  +    +        
Sbjct: 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCF 305

Query: 260 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
            +                AI      +Q++ D   A+ +        
Sbjct: 306 SKDEKP----------VEAIRVCSEVLQMEPDNVNALKDRAEAYLIE 342

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 18/172 (10%), Positives = 45/172 (26%), Gaps = 31/172 (18%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A       +E    D +     A    +  +                +A      A++L 
Sbjct: 162 AIAFLDKILEVCVWDAELRELRAECFIKEGE--------------PRKAISDLKAASKLK 207

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
               +AFY                       + +     + ++L+ +  +   ++    +
Sbjct: 208 NDNTEAFYK-----------ISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256

Query: 261 ELSAIVPARE--KQTIVRTAISKFRAAIQLQFDFH----RAIYNLGTVLYGL 306
               I  A E  +      A SK+ + ++ +        R+   +       
Sbjct: 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 308

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 21/162 (12%), Positives = 43/162 (26%), Gaps = 35/162 (21%)

Query: 142 AKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP 201
                N   ++  D +        L  +                L +A  ++  A    P
Sbjct: 12  DLGTENLYFQSMADVEKHLELGKKLLAAGQ--------------LADALSQFHAAVDGDP 57

Query: 202 TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 261
             + A+Y            R     A    K A  +  K +QL  +   A    G  L +
Sbjct: 58  DNYIAYYR-----------RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK 106

Query: 262 LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 303
              +    ++      A   F+  ++     +        ++
Sbjct: 107 QGKL----DE------AEDDFKKVLKSNPSENEEKEAQSQLI 138

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.5 bits (147), Expect = 5e-10
 Identities = 20/163 (12%), Positives = 48/163 (29%), Gaps = 22/163 (13%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS-TSPSKDALLEEACKKYDEATRL 199
           A   +   ++ NP + +     + +++            +         A    D+   +
Sbjct: 113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172

Query: 200 CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 259
           C    +               R      E   ++A  + + A +L  ++ +A        
Sbjct: 173 CVWDAELREL-----------RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLY 221

Query: 260 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV 302
            +L       E       ++S+ R  ++L  D  R   +   V
Sbjct: 222 YQLGDH----EL------SLSEVRECLKLDQDHKRCFAHYKQV 254

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.1 bits (146), Expect = 7e-10
 Identities = 17/166 (10%), Positives = 49/166 (29%), Gaps = 19/166 (11%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           +       ++ + +      ++  V + +    S +           +A  KY+   +  
Sbjct: 230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR--YTDATSKYESVMKTE 287

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P++ +       +              +E   +A +   + +Q+  ++  AL +   A  
Sbjct: 288 PSIAEY---TVRSKE----RICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
                    ++      AI  +  A +   +  +    L      L
Sbjct: 341 IEEMY----DE------AIQDYETAQEHNENDQQIREGLEKAQRLL 376

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 25/172 (14%), Positives = 49/172 (28%), Gaps = 37/172 (21%)

Query: 141 AAKRYANAIERNPED----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEA 196
           A  +Y + ++  P        +         +                   EA +   E 
Sbjct: 276 ATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK--------------PVEAIRVCSEV 321

Query: 197 TRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG 256
            ++ P   +A  +           R      EE++ +A ++YE A + N N  Q      
Sbjct: 322 LQMEPDNVNALKD-----------RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370

Query: 257 LALQELSAIVPAR-------EKQTIVRTAISKFR-AAIQLQFDFHRAIYNLG 300
            A + L              ++    +  I  +R  A+Q   D  +      
Sbjct: 371 KAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKK 422

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 25/156 (16%), Positives = 41/156 (26%), Gaps = 27/156 (17%)

Query: 204 HDAFYNWAIAISDRAKMRGRTKEAEEL------------WKQATKNYEKAVQLNWNSPQA 251
           H   ++  + +           + E+                A   +  AV  + ++  A
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIA 62

Query: 252 LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL----- 306
                     +      + K      A+      IQL+ DF  A    G +L        
Sbjct: 63  YYRRATVFLAMG-----KSKA-----ALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDE 112

Query: 307 AEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK 342
           AED  +     NP E    E  SQ            
Sbjct: 113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRS 148

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 31/192 (16%), Positives = 57/192 (29%), Gaps = 51/192 (26%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A   ++ A+   P+  +      + L ++ +               + A + +D    L 
Sbjct: 62  ARNDFSQALAIRPDMPEVFNYLGIYLTQAGN--------------FDAAYEAFDSVLELD 107

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           PT + A  N  IA+       GR K A++       +     Q + N P       LA Q
Sbjct: 108 PTYNYAHLNRGIALYYG----GRDKLAQD-------DLLAFYQDDPNDPFRSLWLYLAEQ 156

Query: 261 ELS---AIVPARE-----------------------KQTIVRTAISKFRAAIQLQFDFHR 294
           +L    A    ++                       +QT++    +       L      
Sbjct: 157 KLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSE 216

Query: 295 AIYNLGTVLYGL 306
             + LG     L
Sbjct: 217 TNFYLGKYYLSL 228

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 68.9 bits (169), Expect = 3e-13
 Identities = 24/165 (14%), Positives = 43/165 (26%), Gaps = 35/165 (21%)

Query: 145 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 204
            A+    + E    LY   ++                       A   + +A  + P + 
Sbjct: 32  LASRALTDDERAQLLYERGVLYDSLGL--------------RALARNDFSQALAIRPDMP 77

Query: 205 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 264
           + F    I ++      G    A E        ++  ++L+     A  N G+AL     
Sbjct: 78  EVFNYLGIYLTQA----GNFDAAYE-------AFDSVLELDPTYNYAHLNRGIALYYGGR 126

Query: 265 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 309
                      + A     A  Q   +       L      L E 
Sbjct: 127 D----------KLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEK 161

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 25/125 (20%)

Query: 186 LEEACKKYDEA----TRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA 241
            E    + ++                Y            RG   ++  L   A  ++ +A
Sbjct: 21  QEVILARMEQILASRALTDDERAQLLYE-----------RGVLYDSLGLRALARNDFSQA 69

Query: 242 VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 301
           + +  + P+  N  G+ L +        +       A   F + ++L   ++ A  N G 
Sbjct: 70  LAIRPDMPEVFNYLGIYLTQAGNF----DA------AYEAFDSVLELDPTYNYAHLNRGI 119

Query: 302 VLYGL 306
            LY  
Sbjct: 120 ALYYG 124

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 61.6 bits (150), Expect = 9e-11
 Identities = 20/169 (11%), Positives = 40/169 (23%), Gaps = 33/169 (19%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A        + +P D        L  Q+      LD          ++A +   +     
Sbjct: 130 AQDDLLAFYQDDPNDPFRSLWLYLAEQK------LD---------EKQAKEVLKQHFEKS 174

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
                 +              G   E + L ++   +      L  +  +     G    
Sbjct: 175 DKEQWGWNIVEFY-------LGNISE-QTLMERLKADATDNTSLAEHLSETNFYLGKYYL 226

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 309
            L  +           +A + F+ A+                L  L +D
Sbjct: 227 SLGDL----------DSATALFKLAVANNVHNFVEHRYALLELSLLGQD 265

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 12/86 (13%), Positives = 21/86 (24%), Gaps = 13/86 (15%)

Query: 221 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS 280
             + +      +Q           +    Q L   G+    L               A +
Sbjct: 18  TLQQEVILARMEQI---LASRALTDDERAQLLYERGVLYDSLGLR----------ALARN 64

Query: 281 KFRAAIQLQFDFHRAIYNLGTVLYGL 306
            F  A+ ++ D       LG  L   
Sbjct: 65  DFSQALAIRPDMPEVFNYLGIYLTQA 90

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 9/101 (8%), Positives = 21/101 (20%), Gaps = 18/101 (17%)

Query: 133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK 192
           S Q ++        +         +  +          D              L+ A   
Sbjct: 192 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD--------------LDSATAL 237

Query: 193 YDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ 233
           +  A               + +S      G+ ++      Q
Sbjct: 238 FKLAVANNVHNFVEHRYALLELSL----LGQDQDDLAESDQ 274

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 23/174 (13%), Positives = 56/174 (32%), Gaps = 30/174 (17%)

Query: 138 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEAT 197
              A + ++ A+   PED   ++   +V  ++ +               + A K + +A 
Sbjct: 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE--------------WKTAEKWFLDAL 220

Query: 198 RLCPTLHDAFY--NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW 255
                + +      W   +++     G      + + +A   + +A+ L   +    +  
Sbjct: 221 EKIKAIGNEVTVDKWEPLLNNL----GHVCRKLKKYAEALDYHRQALVLIPQNASTYSAI 276

Query: 256 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 309
           G     +               A+  F  A+ L+ D   ++  LG  +     D
Sbjct: 277 GYIHSLMGNF----------ENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 23/175 (13%), Positives = 45/175 (25%), Gaps = 44/175 (25%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A +  + A         A   +       ++               ++A   Y  A +L 
Sbjct: 110 ARRYLSKATTLEKTYGPAWIAYGHSFAVESE--------------HDQAMAAYFTAAQLM 155

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
              H                 G         K A + + +A+ +    P  ++  G+   
Sbjct: 156 KGCHLPMLY-----------IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAF 204

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQL---------QFDFHRAIYNLGTVLYGL 306
           +              +TA   F  A++             +   + NLG V   L
Sbjct: 205 QNGEW----------KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 26/184 (14%), Positives = 48/184 (26%), Gaps = 39/184 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
             K  +  +E++P     L      L E                   E      +   L 
Sbjct: 41  CYKLTSVVMEKDPFHASCLPVHIGTLVELNK--------------ANELFYLSHKLVDLY 86

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P+   +++                       + A +   KA  L      A   +G +  
Sbjct: 87  PSNPVSWFAVGCYYLMVGH----------KNEHARRYLSKATTLEKTYGPAWIAYGHSFA 136

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL-----YGLAEDTLRTGG 315
             S      ++      A++ +  A QL    H  +  +G          LAE       
Sbjct: 137 VESEH----DQ------AMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQAL 186

Query: 316 TVNP 319
           ++ P
Sbjct: 187 SIAP 190

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 67.1 bits (164), Expect = 5e-13
 Identities = 28/171 (16%), Positives = 48/171 (28%), Gaps = 28/171 (16%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDAL-----LEEACKKYDE 195
           A   +   I  N +  +  Y   +   +    +S    +    A       ++A   Y E
Sbjct: 23  AVSYFRQTIALNIDRTEMYYWTNV---DKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79

Query: 196 ATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW 255
             +  P   D     A         RG+ K+A          YEK +QL  ++  A    
Sbjct: 80  LLQKAPNNVDCLEACAEM----QVCRGQEKDALR-------MYEKILQLEADNLAANIFL 128

Query: 256 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
           G      +     +EK+      +      +        A Y  G      
Sbjct: 129 GNYYYLTA----EQEKK-----KLETDYKKLSSPTKMQYARYRDGLSKLFT 170

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 25/168 (14%), Positives = 44/168 (26%), Gaps = 35/168 (20%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A   Y   +++ P + D L   A +                     ++A + Y++  +L 
Sbjct: 73  AYLFYKELLQKAPNNVDCLEACAEMQVCRGQ--------------EKDALRMYEKILQLE 118

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
                A           A          E  K+  +   K +        A    GL+  
Sbjct: 119 ADNLAANIFLGNYYYLTA----------EQEKKKLETDYKKLSSPTKMQYARYRDGLSKL 168

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 308
             +      EK      A +  +  I        A   L  +L    E
Sbjct: 169 FTTRY----EK------ARNSLQKVILRFPS-TEAQKTLDKILRIEKE 205

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 62.1 bits (151), Expect = 3e-11
 Identities = 20/161 (12%), Positives = 43/161 (26%), Gaps = 29/161 (18%)

Query: 154 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 213
           +  D +        E+                  +A   + +   L     + +Y   + 
Sbjct: 2   QSVDEMLQKVSAAIEAGQ--------------NGQAVSYFRQTIALNIDRTEMYYWTNVD 47

Query: 214 ISDRAKMR-----GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA 268
            +     +         +    + +A   Y++ +Q   N+   L                
Sbjct: 48  KNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQE--- 104

Query: 269 REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 309
                  + A+  +   +QL+ D   A   LG   Y  AE 
Sbjct: 105 -------KDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 69.8 bits (170), Expect = 9e-13
 Identities = 43/163 (26%), Positives = 64/163 (39%), Gaps = 35/163 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A + Y  A+E  PE   A  N A VLQ+                 L+EA   Y EA R+ 
Sbjct: 28  AVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------------LQEALMHYKEAIRIS 73

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           PT  DA+ N    + +               + A + Y +A+Q+N     A +N     +
Sbjct: 74  PTFADAYSNMGNTLKEMQD-----------VQGALQCYTRAIQINPAFADAHSNLASIHK 122

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 303
           +   I            AI+ +R A++L+ DF  A  NL   L
Sbjct: 123 DSGNI----------PEAIASYRTALKLKPDFPDAYCNLAHCL 155

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 66.4 bits (161), Expect = 9e-12
 Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 40/173 (23%)

Query: 152 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 211
            P   D+L N A + +E  +              +EEA + Y +A  + P    A  N A
Sbjct: 5   CPTHADSLNNLANIKREQGN--------------IEEAVRLYRKALEVFPEFAAAHSNLA 50

Query: 212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREK 271
             +      +G+ +EA         +Y++A++++     A +N G  L+E+  +      
Sbjct: 51  SVLQQ----QGKLQEALM-------HYKEAIRISPTFADAYSNMGNTLKEMQDV------ 93

Query: 272 QTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL-----YGLAEDTLRTGGTVNP 319
               + A+  +  AIQ+   F  A  NL ++         A  + RT   + P
Sbjct: 94  ----QGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 59.8 bits (144), Expect = 1e-09
 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 29/161 (18%)

Query: 199 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 258
            CPT  D+  N A       + +G  +EA  L       Y KA+++      A +N    
Sbjct: 4   SCPTHADSLNNLANI----KREQGNIEEAVRL-------YRKALEVFPEFAAAHSNLASV 52

Query: 259 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL-----YGLAEDTLRT 313
           LQ+   +          + A+  ++ AI++   F  A  N+G  L        A      
Sbjct: 53  LQQQGKL----------QEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR 102

Query: 314 GGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL 354
              +NP      + +S  A     +  +  + + Y +AL+L
Sbjct: 103 AIQINPAFA---DAHSNLASIHKDSGNIPEAIASYRTALKL 140

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 58.3 bits (140), Expect = 3e-09
 Identities = 31/122 (25%), Positives = 43/122 (35%), Gaps = 25/122 (20%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A   Y  AI  +P   DA  N    L+E  D              ++ A + Y  A ++ 
Sbjct: 62  ALMHYKEAIRISPTFADAYSNMGNTLKEMQD--------------VQGALQCYTRAIQIN 107

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P   DA  N A       K  G   EA         +Y  A++L  + P A  N    LQ
Sbjct: 108 PAFADAHSNLASIH----KDSGNIPEAIA-------SYRTALKLKPDFPDAYCNLAHCLQ 156

Query: 261 EL 262
            +
Sbjct: 157 IV 158

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 47.1 bits (111), Expect = 9e-06
 Identities = 30/163 (18%), Positives = 49/163 (30%), Gaps = 31/163 (19%)

Query: 110 LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQES 169
           +      A    N    + E        +  A + Y  AI+ NP   DA  N A + ++S
Sbjct: 70  IRISPTFADAYSNMGNTLKEMQD-----VQGALQCYTRAIQINPAFADAHSNLASIHKDS 124

Query: 170 ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE 229
            +              + EA   Y  A +L P   DA+ N A  +               
Sbjct: 125 GN--------------IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD---------- 160

Query: 230 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQ 272
            W    +  +K V +  +  +  N         S + P     
Sbjct: 161 -WTDYDERMKKLVSIVADQLEK-NRLPSVHPHHSMLYPLSHGF 201

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 64.0 bits (156), Expect = 7e-12
 Identities = 27/211 (12%), Positives = 59/211 (27%), Gaps = 42/211 (19%)

Query: 140 FAAKRYANAIER----NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDE 195
              K +  A++             +N   +     +              + EA K +  
Sbjct: 17  ADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKN--------------MTEAEKAFTR 62

Query: 196 ATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV-QLNWNSPQALNN 254
           +      L  A++            RG      E +  A K+ ++A+ QL  N       
Sbjct: 63  SINRDKHLAVAYFQ-----------RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI 111

Query: 255 WGLALQELSAIV-----PAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 309
            GL  +  +  V         K+   + A  +   A  ++ +   +  +        A +
Sbjct: 112 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKID-------KAME 164

Query: 310 TLRTGGTVNPREVSPNELYSQSAIYIAAAHA 340
            +       P  +    L+  +   +A    
Sbjct: 165 CVWKQKLYEPVVIPVGRLFRPNERQVAQLAK 195

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 61.7 bits (150), Expect = 9e-12
 Identities = 22/167 (13%), Positives = 45/167 (26%), Gaps = 38/167 (22%)

Query: 145 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 204
            A     + +  + LY       ++                 ++A K +     L     
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGK--------------WDDAQKIFQALCMLDHYDA 52

Query: 205 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 264
             F              G  +++  L++QA ++Y     ++ N P+   +      +L  
Sbjct: 53  RYFLG-----------LGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLG- 100

Query: 265 IVPAREKQTIVRTAISKFRAAIQLQF---DFHRAIYNLGTVLYGLAE 308
                        A S F +A  L              G +L  +  
Sbjct: 101 ----DLDG-----AESGFYSARALAAAQPAHEALAARAGAMLEAVTA 138

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 57.1 bits (138), Expect = 4e-10
 Identities = 24/173 (13%), Positives = 44/173 (25%), Gaps = 33/173 (19%)

Query: 101 ASQGNTPHQLAEQNNAAMELINSVTGVD--EEGRSRQRILTFAAKRYANAIERNPEDYDA 158
            S G T   L   +   +E + ++ G +  + G+        A K +      +  D   
Sbjct: 1   GSDGGTLAMLRGLSEDTLEQLYAL-GFNQYQAGKWDD-----AQKIFQALCMLDHYDARY 54

Query: 159 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRA 218
                   Q                   E+A + Y     +        ++ A       
Sbjct: 55  FLGLGACRQSLGL--------------YEQALQSYSYGALMDINEPRFPFHAAECH---- 96

Query: 219 KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREK 271
              G    AE         +  A  L    P        A   L A+   +++
Sbjct: 97  LQLGDLDGAES-------GFYSARALAAAQPAHEALAARAGAMLEAVTARKDR 142

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 65.1 bits (158), Expect = 3e-11
 Identities = 25/166 (15%), Positives = 42/166 (25%), Gaps = 35/166 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
                  A    P+   A+ +     Q                  ++       +A  L 
Sbjct: 245 LLPVLCQAHGLPPDQVVAIASNIGGKQALET--------------VQRLLPVLCQAHGLT 290

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P    A  +            G  K+A E  ++      +A  L  +   A+ +     Q
Sbjct: 291 PDQVVAIAS-----------HGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQ 339

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
            L            V+  +     A  L  D   AI + G     L
Sbjct: 340 ALET----------VQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 375

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 59.7 bits (144), Expect = 1e-09
 Identities = 22/166 (13%), Positives = 39/166 (23%), Gaps = 35/166 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
                  A         A+ +     Q                  ++       +A  L 
Sbjct: 584 LLPVLCQAHGLTQVQVVAIASNIGGKQALET--------------VQRLLPVLCQAHGLT 629

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P    A  +               K+A E  ++      +A  L  +   A+ + G   Q
Sbjct: 630 PAQVVAIAS-----------HDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 678

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
            L            V+  +     A  L  +   AI +       L
Sbjct: 679 ALET----------VQRLLPVLCQAHGLTQEQVVAIASNNGGKQAL 714

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.1 bits (140), Expect = 4e-09
 Identities = 42/215 (19%), Positives = 67/215 (31%), Gaps = 29/215 (13%)

Query: 95  EDSVTDASQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPE 154
           ED V    Q +    L      A EL      +D       +++  A +    A+E    
Sbjct: 121 EDIVGVGKQWSGARALEALLTDAGELRGPPLQLD-----TGQLVKIAKRGGVTAMEAVHA 175

Query: 155 DYDALYNWALVLQESADNVSLDSTSPSKDAL--LEEACKKYDEATRLCPTLHDAFYNWAI 212
             +AL    L L   A  V++ S +  K AL  ++       +A  L P    A  +   
Sbjct: 176 SRNALTGAPLNLT-PAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIAS--- 231

Query: 213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQ 272
                       K+A E  ++      +A  L  +   A+ +     Q L          
Sbjct: 232 --------HDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALET-------- 275

Query: 273 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 307
             V+  +     A  L  D   AI + G     L 
Sbjct: 276 --VQRLLPVLCQAHGLTPDQVVAIASHGGGKQALE 308

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 56.6 bits (136), Expect = 1e-08
 Identities = 23/166 (13%), Positives = 39/166 (23%), Gaps = 35/166 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
                  A    P+   A+ +     Q                  ++       +A  L 
Sbjct: 516 LLPVLCQAHGLTPDQVVAIASNGGGKQALET--------------VQRLLPVLCQAHGLT 561

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P    A  +            G  K+A E  ++      +A  L      A+ +     Q
Sbjct: 562 PDQVVAIAS-----------NGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQ 610

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
            L            V+  +     A  L      AI +       L
Sbjct: 611 AL----------ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQAL 646

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.8 bits (134), Expect = 2e-08
 Identities = 22/167 (13%), Positives = 39/167 (23%), Gaps = 35/167 (20%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
                  A    P+   A+ +     Q                  ++       +A  L 
Sbjct: 652 LLPVLCQAHGLTPDQVVAIASNGGGKQALET--------------VQRLLPVLCQAHGLT 697

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
                A  +               K+A E  ++      +A  L  +   A+ + G   Q
Sbjct: 698 QEQVVAIAS-----------NNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 746

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 307
            L            V+  +     A  L      AI +       L 
Sbjct: 747 ALET----------VQRLLPVLCQAHGLTPAQVVAIASNIGGKQALE 783

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.9 bits (129), Expect = 1e-07
 Identities = 23/188 (12%), Positives = 42/188 (22%), Gaps = 46/188 (24%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
                  A    P+   A+ +     Q                  ++       +A  L 
Sbjct: 347 LLPVLCQAHGLTPDQVVAIASNGGGKQALET--------------VQRLLPVLCQAHGLT 392

Query: 201 PTLHDAFYNW-----------AIAISDRA-----------KMRGRTKEAEELWKQATKNY 238
           P    A  +             + +  +A                 K+A E  ++     
Sbjct: 393 PDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 452

Query: 239 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN 298
            +   L      A+ +     Q L            V+  +     A  L  D   AI +
Sbjct: 453 CQTHGLTPAQVVAIASHDGGKQALET----------VQQLLPVLCQAHGLTPDQVVAIAS 502

Query: 299 LGTVLYGL 306
                  L
Sbjct: 503 NIGGKQAL 510

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.5 bits (128), Expect = 1e-07
 Identities = 23/166 (13%), Positives = 42/166 (25%), Gaps = 36/166 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
                  A    P+   A+ +     Q                  ++       +A  L 
Sbjct: 313 LLPVLCQAHGLTPDQVVAIASHDGGKQALET--------------VQRLLPVLCQAHGLT 358

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P    A  +            G  K+A E  ++      +A  L  +   A+ + G    
Sbjct: 359 PDQVVAIAS-----------NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG---- 403

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
                   ++    V+  +     A  L  D   AI +       L
Sbjct: 404 -------GKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL 442

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 58.2 bits (142), Expect = 4e-11
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 26/112 (23%)

Query: 152 NPEDY-DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 210
           +P +  +A YN      +  D               +EA + Y +A  L P   +A+YN 
Sbjct: 4   DPGNSAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPNNAEAWYNL 49

Query: 211 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL 262
             A       +G   EA E        Y+KA++L+ N+ +A  N G A Q+ 
Sbjct: 50  GNAYYK----QGDYDEAIE-------YYQKALELDPNNAEAKQNLGNAKQKQ 90

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 54.3 bits (132), Expect = 9e-10
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 21/102 (20%)

Query: 205 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 264
           +A+YN   A   +    G   EA E        Y+KA++L+ N+ +A  N G A  +   
Sbjct: 10  EAWYNLGNAYYKQ----GDYDEAIE-------YYQKALELDPNNAEAWYNLGNAYYKQGD 58

Query: 265 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
                ++      AI  ++ A++L  +   A  NLG      
Sbjct: 59  Y----DE------AIEYYQKALELDPNNAEAKQNLGNAKQKQ 90

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 38.1 bits (90), Expect = 4e-04
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 14/76 (18%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A + Y  A+E +P + +A YN      +  D               +EA + Y +A  L 
Sbjct: 28  AIEYYQKALELDPNNAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELD 73

Query: 201 PTLHDAFYNWAIAISD 216
           P   +A  N   A   
Sbjct: 74  PNNAEAKQNLGNAKQK 89

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 56.7 bits (138), Expect = 3e-10
 Identities = 16/146 (10%), Positives = 42/146 (28%), Gaps = 39/146 (26%)

Query: 152 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 211
             ++ +  Y   ++  ++ +                E+   +++A +L P     +    
Sbjct: 2   VDQNPEEYYLEGVLQYDAGN--------------YTESIDLFEKAIQLDPEESKYWLMKG 47

Query: 212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS--PQALNNWGLALQELSAIVPAR 269
            A+ +      R +EA +        Y   + +  +            AL+ +      +
Sbjct: 48  KALYN----LERYEEAVD-------CYNYVINVIEDEYNKDVWAAKADALRYIE----GK 92

Query: 270 EKQTIVRTAISKFRAAIQLQ--FDFH 293
           E             A  +L+     H
Sbjct: 93  EV------EAEIAEARAKLEHHHHHH 112

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 47.4 bits (114), Expect = 5e-07
 Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 23/104 (22%)

Query: 205 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 264
           + +Y   +   D     G   E+ +        +EKA+QL+    +     G AL  L  
Sbjct: 7   EEYYLEGVLQYDA----GNYTESID-------LFEKAIQLDPEESKYWLMKGKALYNLER 55

Query: 265 IVPAREKQTIVRTAISKFRAAIQLQFDFHR--AIYNLGTVLYGL 306
                E+      A+  +   I +  D +           L  +
Sbjct: 56  Y----EE------AVDCYNYVINVIEDEYNKDVWAAKADALRYI 89

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 44.4 bits (106), Expect = 5e-06
 Identities = 15/107 (14%), Positives = 26/107 (24%), Gaps = 27/107 (25%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           +   +  AI+ +PE+          L                    EEA   Y+    + 
Sbjct: 25  SIDLFEKAIQLDPEESKYWLMKGKALYNLER--------------YEEAVDCYNYVINVI 70

Query: 201 P--TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 245
                 D +   A A+          +   E         E   +L 
Sbjct: 71  EDEYNKDVWAAKADALRY----IEGKEVEAE-------IAEARAKLE 106

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 9e-09
 Identities = 58/381 (15%), Positives = 106/381 (27%), Gaps = 115/381 (30%)

Query: 68  LNPALRK----DEGNRTFTMRELLTELKSEGEDSVTDASQGNTPHQLAEQNNAAMELINS 123
           L+ A       D  + T T  E+   L         D    + P ++   N   + +I  
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVK-SLLL----KYLDCRPQDLPREVLTTNPRRLSIIAE 335

Query: 124 VTGVDEEGRSR-QRILTFAAKRYANAIER-----NPEDYDALYNWAL-VLQESADNVS-- 174
                 +G +           +    IE       P +Y  ++   L V   SA ++   
Sbjct: 336 SI---RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF-DRLSVFPPSA-HIPTI 390

Query: 175 ------LDSTSPSKDALLEEACKK------YDEATRLCPTLHDAFYNWAIAISDRAKMRG 222
                  D        ++ +  K         E+T    ++        I +  + K+  
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI---SIPS------IYLELKVKLEN 441

Query: 223 RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE------------LSAIVPARE 270
                  L +    +Y        N P+  ++  L                L  I     
Sbjct: 442 EY----ALHRSIVDHY--------NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489

Query: 271 KQTIVRTAISKFRAAIQLQFDFHRA-IYNLGTVLYGLAE--DTLRTGGTVNPREVSPNEL 327
                   ++ FR  + L F F    I +  T         +TL+             + 
Sbjct: 490 --------MTLFR-MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ-----------LKF 529

Query: 328 YSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRS 387
           Y     YI       P Y       RLV ++L        +L      +  + ++D    
Sbjct: 530 YKP---YICDND---PKYE------RLVNAIL-------DFLPKIEENLICSKYTDL--L 568

Query: 388 QFVLNHEG---LQQASKNEQK 405
           +  L  E     ++A K  Q+
Sbjct: 569 RIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 57/385 (14%), Positives = 96/385 (24%), Gaps = 118/385 (30%)

Query: 154 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEAT-RLCPTLHDAFYNWAI 212
           E+ D +         S D VS          L      K +E   +    +    Y +  
Sbjct: 49  EEIDHIIM-------SKDAVS------GTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-- 93

Query: 213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQ 272
            +    K   R           T+ Y +     +N  Q    +          V   +  
Sbjct: 94  -LMSPIKTEQRQPSMM------TRMYIEQRDRLYNDNQVFAKYN---------VSRLQPY 137

Query: 273 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG--------LAEDTLRTGGTV--NPREV 322
             +R A+ + R                  ++ G        +A D   +         ++
Sbjct: 138 LKLRQALLELRP-------------AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 323 ---------SPNE-------LYSQ--SAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYL 364
                    SP         L  Q        + H+      ++S    L R +   PY 
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY- 243

Query: 365 KAGYLTAPPAGIPVAPHS----D--WKRSQFVLNHEGLQQASK----NEQKQVTRSLSG- 413
                           +                N   L    K       KQVT  LS  
Sbjct: 244 ---------------ENCLLVLLNVQNAK--AWNAFNLS--CKILLTTRFKQVTDFLSAA 284

Query: 414 RTGDFSPDRRAIRIEVPDIVSVSA----CADLTLPPGAGLCIETIHGPVFLVADSWEALD 469
            T   S D  ++ +   ++ S+      C    LP        T + P   ++   E++ 
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV--L--TTN-P-RRLSIIAESIR 338

Query: 470 GWLDAIRLVYTIYARGKADVLAGII 494
             L         +     D L  II
Sbjct: 339 DGLA--TWDN--WKHVNCDKLTTII 359

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 51.8 bits (124), Expect = 3e-08
 Identities = 22/168 (13%), Positives = 41/168 (24%), Gaps = 35/168 (20%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
                A   E + +  + LY+ A    +S                 E+A   +     L 
Sbjct: 6   GGGTIAMLNEISSDTLEQLYSLAFNQYQS--------------GXYEDAHXVFQALCVLD 51

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
                 F              G  ++A   +  A  +Y     ++   P+   +    L 
Sbjct: 52  HYDSRFFLGL-----------GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 308
           +   +            A S    A +L  +          V   L  
Sbjct: 101 QXGEL----------AEAESGLFLAQELIANXPEFXELSTRVSSMLEA 138

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 51.1 bits (122), Expect = 6e-08
 Identities = 14/132 (10%), Positives = 25/132 (18%), Gaps = 25/132 (18%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A   +      +  D           Q                   + A   Y     + 
Sbjct: 40  AHXVFQALCVLDHYDSRFFLGLGACRQAMGQ--------------YDLAIHSYSYGAVMD 85

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
                  ++                       +A      A +L  N P+          
Sbjct: 86  IXEPRFPFH-----------AAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS 134

Query: 261 ELSAIVPAREKQ 272
            L AI   +E +
Sbjct: 135 MLEAIKLKKEMK 146

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 10/119 (8%), Positives = 25/119 (21%), Gaps = 21/119 (17%)

Query: 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 245
           L            +     +  Y+               +     ++ A   ++    L+
Sbjct: 3   LGSGGGTIAMLNEISSDTLEQLYS-----------LAFNQYQSGXYEDAHXVFQALCVLD 51

Query: 246 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY 304
               +     G   Q +               AI  +     +     R  ++    L 
Sbjct: 52  HYDSRFFLGLGACRQAMGQY----------DLAIHSYSYGAVMDIXEPRFPFHAAECLL 100

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 51.7 bits (124), Expect = 4e-08
 Identities = 16/122 (13%), Positives = 30/122 (24%), Gaps = 25/122 (20%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           +     +      +  D +Y++A                      +EEA   +       
Sbjct: 21  SGATLKDINAIPDDMMDDIYSYAYDFYNKGR--------------IEEAEVFFRFLCIYD 66

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
               D                    + +E ++QA   Y  A  L  N    + + G    
Sbjct: 67  FYNVDYIMGL-----------AAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115

Query: 261 EL 262
            L
Sbjct: 116 RL 117

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 19/150 (12%), Positives = 45/150 (30%), Gaps = 30/150 (20%)

Query: 193 YDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL 252
             +   +   + D  Y++A         +GR +EAE         +      ++ +   +
Sbjct: 25  LKDINAIPDDMMDDIYSYAYD----FYNKGRIEEAEVF-------FRFLCIYDFYNVDYI 73

Query: 253 NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL-----A 307
                  Q               + A   +  A  L  + +  +++ G     L     A
Sbjct: 74  MGLAAIYQIKEQF----------QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKA 123

Query: 308 EDTLRTGGTVNPREVSPNELYSQSAIYIAA 337
           ++        +  E    +L  ++  Y+ A
Sbjct: 124 KECFELVIQHSNDE----KLKIKAQSYLDA 149

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 25/122 (20%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A   Y  AIE NP +     N A    +  +                 A +  + A  + 
Sbjct: 31  AVHFYGKAIELNPANAVYFCNRAAAYSKLGNY--------------AGAVQDCERAICID 76

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P    A+              G    +     +A   Y+KA++L+ ++    +N  +A  
Sbjct: 77  PAYSKAYGR-----------MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125

Query: 261 EL 262
           +L
Sbjct: 126 KL 127

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 44.1 bits (105), Expect = 9e-06
 Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 21/122 (17%)

Query: 187 EEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW 246
           E A   Y +A  L P     F N           R         +  A ++ E+A+ ++ 
Sbjct: 29  EAAVHFYGKAIELNPANAVYFCN-----------RAAAYSKLGNYAGAVQDCERAICIDP 77

Query: 247 NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
              +A    GLAL  L+              A++ ++ A++L  D      NL      L
Sbjct: 78  AYSKAYGRMGLALSSLNKH----------VEAVAYYKKALELDPDNETYKSNLKIAELKL 127

Query: 307 AE 308
            E
Sbjct: 128 RE 129

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 14/122 (11%), Positives = 30/122 (24%), Gaps = 23/122 (18%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
             +R    + +  ++    +       E                  + A      A    
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQ--------------FDAALPHLRAALDFD 49

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           PT   A+      +      +G    A + W+        A   +    Q +    + L+
Sbjct: 50  PTYSVAWKWLGKTLQG----QGDRAGARQAWESGL-----AAAQSRGDQQVVKELQVFLR 100

Query: 261 EL 262
            L
Sbjct: 101 RL 102

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 13/124 (10%), Positives = 31/124 (25%), Gaps = 19/124 (15%)

Query: 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 245
           ++   ++ +             +      ++      +   A         +   A+  +
Sbjct: 1   MQAITERLEAMLAQGTDNMLLRFTLGKTYAEH----EQFDAALP-------HLRAALDFD 49

Query: 246 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 305
                A    G  LQ       AR+      + +     A        + +  L   L  
Sbjct: 50  PTYSVAWKWLGKTLQGQGDRAGARQ---AWESGL-----AAAQSRGDQQVVKELQVFLRR 101

Query: 306 LAED 309
           LA +
Sbjct: 102 LARE 105

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 15/116 (12%), Positives = 33/116 (28%), Gaps = 27/116 (23%)

Query: 152 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 211
           +PED    Y  A    +  +                 A   ++E     P     +Y+  
Sbjct: 3   DPEDPFTRYALAQEHLKHDN--------------ASRALALFEELVETDPDYVGTYYHLG 48

Query: 212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQL--NWNSPQALNNWGLALQELSAI 265
                      RT +A +        Y + +++     + + L+    A  +   +
Sbjct: 49  KLYER----LDRTDDAID-------TYAQGIEVAREEGTQKDLSELQDAKLKAEGL 93

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 15/159 (9%), Positives = 45/159 (28%), Gaps = 29/159 (18%)

Query: 145 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 204
               IE  P++Y   ++  ++++   D                +  +   +        +
Sbjct: 155 ITAIIEEQPKNYQVWHHRRVLVEWLRD--------------PSQELEFIADILNQDAKNY 200

Query: 205 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 264
            A+ +           R    +  +LW    +  ++ ++ +  +    N     +     
Sbjct: 201 HAWQH-----------RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT-- 247

Query: 265 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 303
                  + ++   +      I+L      A   L  +L
Sbjct: 248 --TGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 284

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 39/309 (12%), Positives = 79/309 (25%), Gaps = 60/309 (19%)

Query: 38  IQPPPSTEQTEKQHPSTEQTEKQPPSTEQTLNPALRKDEGNRTFTMRELLTELKSEGEDS 97
            QPPP         P  +Q  K+  + E     A   D+G  +      +          
Sbjct: 20  AQPPPQ-----PHPPPPQQQHKEEMAAEAGEAVASPMDDGFVSLDSPSYVLYRDRAEWAD 74

Query: 98  VTDASQGNTPHQLA-----EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERN 152
           +    Q + P+ +      ++     +   +V         R      A K   +AIE N
Sbjct: 75  IDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAV-------LQRDERSERAFKLTRDAIELN 127

Query: 153 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 212
             +Y   +   ++L+                  L E            P  +  +++   
Sbjct: 128 AANYTVWHFRRVLLKS-------------LQKDLHEEMNYITAIIEEQPKNYQVWHH--- 171

Query: 213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQ 272
                   R    E      Q  +     +  +  +  A  +    +QE           
Sbjct: 172 --------RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK--------- 214

Query: 273 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNEL-YSQS 331
            +    +      ++     +        V+              N R V   E+ Y+  
Sbjct: 215 -LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT--------TGYNDRAVLEREVQYTLE 265

Query: 332 AIYIAAAHA 340
            I +   + 
Sbjct: 266 MIKLVPHNE 274

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 15/94 (15%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           +   Y  A++   E+ +     A VL   A              +  +     D+A  L 
Sbjct: 63  SLLAYRQALQLRGENAELYAALATVLYYQASQ-----------HMTAQTRAMIDKALALD 111

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA 234
                A    A      A M+    +A ELW++ 
Sbjct: 112 SNEITALMLLASD----AFMQANYAQAIELWQKV 141

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 16/122 (13%), Positives = 34/122 (27%), Gaps = 22/122 (18%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
             +   + I  NP++ +             D                 +   Y +A +L 
Sbjct: 29  QLQALQDKIRANPQNSEQWALLGEYYLWQND--------------YSNSLLAYRQALQLR 74

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
               + +   A  +  +A  +  T +   +        +KA+ L+ N   AL        
Sbjct: 75  GENAELYAALATVLYYQAS-QHMTAQTRAM-------IDKALALDSNEITALMLLASDAF 126

Query: 261 EL 262
             
Sbjct: 127 MQ 128

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 42.2 bits (99), Expect = 9e-05
 Identities = 14/125 (11%), Positives = 35/125 (28%), Gaps = 18/125 (14%)

Query: 180 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 239
            +     E   +   +  R  P   + +            + G     +  +  +   Y 
Sbjct: 20  FASQQNPEAQLQALQDKIRANPQNSEQWA-----------LLGEYYLWQNDYSNSLLAYR 68

Query: 240 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL 299
           +A+QL   + +        L   +        Q +     +    A+ L  +   A+  L
Sbjct: 69  QALQLRGENAELYAALATVLYYQA-------SQHMTAQTRAMIDKALALDSNEITALMLL 121

Query: 300 GTVLY 304
            +  +
Sbjct: 122 ASDAF 126

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 19/145 (13%), Positives = 38/145 (26%), Gaps = 36/145 (24%)

Query: 150 ERNP-EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY 208
             NP   ++      L + + A+              L EA   ++   +  P   +A+ 
Sbjct: 10  ANNPYMYHENPMEEGLSMLKLAN--------------LAEAALAFEAVCQKEPEREEAWR 55

Query: 209 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA 268
           +            G T+   E    A      A  L+           ++          
Sbjct: 56  S-----------LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN---- 100

Query: 269 REKQTIVRTAISKFRAAIQLQFDFH 293
                    A++  RA +  Q  + 
Sbjct: 101 ------ANAALASLRAWLLSQPQYE 119

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 14/105 (13%), Positives = 27/105 (25%), Gaps = 25/105 (23%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           AA  +    ++ PE  +A  +  L   E+                   A    + A  L 
Sbjct: 36  AALAFEAVCQKEPEREEAWRSLGLTQAENEK--------------DGLAIIALNHARMLD 81

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 245
           P         A++ ++           E     A  +    +   
Sbjct: 82  PKDIAVHAALAVSHTN-----------EHNANAALASLRAWLLSQ 115

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 17/111 (15%), Positives = 27/111 (24%), Gaps = 15/111 (13%)

Query: 215 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTI 274
            +     G +        +A   +E   Q      +A  + GL   E       ++    
Sbjct: 17  HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENE-----KDGL-- 69

Query: 275 VRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL-----AEDTLRTGGTVNPR 320
              AI     A  L          L            A  +LR      P+
Sbjct: 70  ---AIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 13/88 (14%), Positives = 23/88 (26%), Gaps = 20/88 (22%)

Query: 222 GRTKEAEELWKQATKNYEKAVQLNWNSP---QALNNWGLALQELSAIVPAREKQTIVRTA 278
           G   +A          YEKA+          +     G   + L        ++     A
Sbjct: 4   GLEAQAVPY-------YEKAIASGLQGKDLAECYLGLGSTFRTL-----GEYRK-----A 46

Query: 279 ISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
            +     ++   +          VLY L
Sbjct: 47  EAVLANGVKQFPNHQALRVFYAMVLYNL 74

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 17/112 (15%), Positives = 31/112 (27%), Gaps = 20/112 (17%)

Query: 186 LEEACKKYDEATRLC---PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV 242
             +A   Y++A         L + +              G  ++AE +           V
Sbjct: 6   EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL----GEYRKAEAV-------LANGV 54

Query: 243 QLNWNSPQALNNWGLALQELSAIVPARE--KQTIVRT----AISKFRAAIQL 288
           +   N       + + L  L       E   + I  T     I  ++ AI  
Sbjct: 55  KQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF 106

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 19/114 (16%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A   Y  AIE +P +     N A V  E                   E  +  ++A  + 
Sbjct: 27  AHVHYDKAIELDPSNITFYNNKAAVYFEEKK--------------FAECVQFCEKAVEVG 72

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN 254
                 +   A A+S R    G   + +     A + + +++      P+ +  
Sbjct: 73  RETRADYKLIAKAMS-R---AGNAFQKQNDLSLAVQWFHRSLSEF-RDPELVKK 121

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 41.5 bits (98), Expect = 9e-05
 Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 19/122 (15%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A K Y  A E +P +   + N A V  E  D                +  +  ++A  + 
Sbjct: 23  ALKHYDKAKELDPTNMTYITNQAAVYFEKGD--------------YNKCRELCEKAIEVG 68

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
               + +   A A +      G +   EE +K A   Y K++  +  +P  L     A +
Sbjct: 69  RENREDYRQIAKAYA----RIGNSYFKEEKYKDAIHFYNKSLAEH-RTPDVLKKCQQAEK 123

Query: 261 EL 262
            L
Sbjct: 124 IL 125

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 12/73 (16%)

Query: 186 LEEACKKYDEATRLCPTLHD-AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 244
           +E A +  +E  +  P   D A+Y             G        W++A  NY+ A++L
Sbjct: 16  IENALQALEEFLQTEPVGKDEAYYL-----------MGNAYRKLGDWQKALNNYQSAIEL 64

Query: 245 NWNSPQALNNWGL 257
           N +SP       +
Sbjct: 65  NPDSPALQARKMV 77

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 31/140 (22%), Positives = 48/140 (34%), Gaps = 21/140 (15%)

Query: 362 PYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPD 421
             ++ G+L    + +       WKR+ F L  +G      +E  Q              D
Sbjct: 7   GLVRGGWLWRQSSIL-----RRWKRNWFALWLDGTLGYYHDETAQDEE-----------D 50

Query: 422 RRAIRIEVPDIVSVSACADLTLPPGAG----LCIETIHGPVF-LVADSWEALDGWLDAIR 476
           R  I   V DI     C D+  P G      L +    G    L A++ +    W  A+ 
Sbjct: 51  RVVIHFNVRDIKVGQECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALM 110

Query: 477 LVYTIYARGKADVLAGIITG 496
              +  A   A V +G  +G
Sbjct: 111 EANSTPAPAGATVPSGPSSG 130

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A* Length = 169

 Score = 40.3 bits (93), Expect = 4e-04
 Identities = 13/128 (10%), Positives = 34/128 (26%), Gaps = 12/128 (9%)

Query: 364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGR--------- 414
           +                  ++K+  F+L    L     + ++    S  G          
Sbjct: 4   ILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCV 63

Query: 415 ---TGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGW 471
                + +P          +  S      +         +    GP+++ + + E    W
Sbjct: 64  ETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRW 123

Query: 472 LDAIRLVY 479
           +  ++ V 
Sbjct: 124 IHQLKNVI 131

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	496
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.91
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.9
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.9
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.89
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.89
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.88
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.88
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.86
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.86
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.85
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.85
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.85
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.84
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.84
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.84
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.84
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.83
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.83
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.83
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.82
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.82
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.82
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.82
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.81
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.81
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.81
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.8
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.8
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.8
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.8
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.8
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.8
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.8
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.79
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.79
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.79
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.79
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.79
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.78
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.78
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.78
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.78
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.78
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.78
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.77
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.77
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.77
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.76
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.76
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.76
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.76
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.75
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.75
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.74
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.74
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.73
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.73
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.73
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.73
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.73
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.73
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.72
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.71
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.71
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.71
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.7
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.7
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.69
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.69
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.69
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.69
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.68
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.68
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.68
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.68
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.67
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.67
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.67
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.67
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.66
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.66
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.65
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.64
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.63
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.63
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.63
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.63
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.62
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.62
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.62
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.62
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.62
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.61
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.61
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.61
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.61
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.61
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.61
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.61
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.6
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.6
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.6
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.6
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.6
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.6
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.6
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.6
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.59
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.59
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.59
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.59
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.58
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.58
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.58
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.57
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.57
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.57
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.57
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.56
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.56
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.56
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.56
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.55
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.55
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.55
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.54
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.54
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.54
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.54
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.54
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.53
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.53
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.53
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.53
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.52
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.51
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.51
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.5
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.49
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.49
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.49
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.48
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.48
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.48
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.48
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.47
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.47
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.47
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.47
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.47
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.46
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.46
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.45
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.45
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.44
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.44
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.44
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.44
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.43
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.43
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.43
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.41
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.4
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.39
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.39
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.38
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.37
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.36
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.35
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.35
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.35
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.34
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.33
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.3
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.3
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.27
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.26
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.25
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.25
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.23
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.23
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.23
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.22
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.2
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.19
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.15
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.13
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.12
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.11
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.08
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.04
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.03
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.03
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.01
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.0
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.97
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.95
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.91
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.9
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.86
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.85
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.84
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.78
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.66
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.66
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.64
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.64
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.59
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.56
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.56
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.54
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.52
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.51
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.5
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.43
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.9
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.9
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.78
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.5
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	97.5
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.46
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	97.42
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.41
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	97.36
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	97.27
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.26
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.18
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.11
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	97.09
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	97.04
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	96.98
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.97
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	96.95
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.95
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.91
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	96.82
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	96.77
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.76
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.76
2d9v_A	130	Pleckstrin homology domain-containing protein fami	96.74
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	96.67
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	96.53
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	96.48
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	96.48
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	96.47
2dkp_A	128	Pleckstrin homology domain-containing family A mem	96.44
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	96.39
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	96.33
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	96.32
2yry_A	122	Pleckstrin homology domain-containing family A mem	96.28
2d9y_A	117	Pleckstrin homology domain-containing protein fami	96.28
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	96.23
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	96.18
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	96.16
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	96.09
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	96.09
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	96.07
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	96.05
2d9z_A	129	Protein kinase C, NU type; PH domain, structural g	95.94
3cxb_B	112	Pleckstrin homology domain-containing family M mem	95.92
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	95.88
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.85
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	95.8
2coa_A	125	Protein kinase C, D2 type; protein kinase D2, PH d	95.78
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	95.76
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	95.76
1wi1_A	126	Calcium-dependent activator protein for secretion,	95.6
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	95.42
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	95.4
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	95.37
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.32
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	95.3
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	95.29
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	95.27
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	95.18
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.12
3tca_A	291	Amyloid beta A4 precursor protein-binding family 1	95.05
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	94.95
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.9
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	94.87
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.87
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	94.81
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	94.79
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	94.61
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.52
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	94.51
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	94.49
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	94.12
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.98
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	93.97
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	93.82
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	93.8
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	93.45
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.09
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.02
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.71
2fjl_A	150	1-phosphatidylinositol-4,5-bisphosphate phosphodie	92.49
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	92.12
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	92.08
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	91.13
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	90.79
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	90.78
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	90.76
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	90.63
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	90.5
1v5m_A	136	SH2 and PH domain-containing adapter protein APS;	90.45
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	89.92
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	89.56
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	89.51
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	89.08
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	88.94
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	88.22
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	85.86
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	85.45
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	85.12
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	84.44
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	83.93
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	81.6
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	81.39
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	80.64
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	80.64

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.91  E-value=1.5e-22  Score=183.66  Aligned_cols=167  Identities=17%  Similarity=0.213  Sum_probs=160.3

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY  208 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~  208 (496)
                      +..+..+|++++|+..|+++++++|+++.+++.+|.+|..+|+              +++|+..+++++..+|++..++.
T Consensus        12 G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~   77 (184)
T 3vtx_A           12 GDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGL--------------PNDAIESLKKFVVLDTTSAEAYY   77 (184)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCCCCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHhcCchhHHHHH
Confidence            4446778999999999999999999999999999999999999              99999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh
Q 010976          209 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  288 (496)
Q Consensus       209 ~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l  288 (496)
                      .+|.++..    .++++.|+       ..+.+++.++|++..++..+|.++..+|++          ++|+..|++++++
T Consensus        78 ~~~~~~~~----~~~~~~a~-------~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~~l~~  136 (184)
T 3vtx_A           78 ILGSANFM----IDEKQAAI-------DALQRAIALNTVYADAYYKLGLVYDSMGEH----------DKAIEAYEKTISI  136 (184)
T ss_dssp             HHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHH
T ss_pred             HHHHHHHH----cCCHHHHH-------HHHHHHHHhCccchHHHHHHHHHHHHhCCc----------hhHHHHHHHHHHh
Confidence            99999999    99999999       899999999999999999999999999999          9999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHH
Q 010976          289 QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS  349 (496)
Q Consensus       289 ~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~  349 (496)
                      +|+++.+++++|.+|..+|+                   +.+|..+|+++++++|+++.|.
T Consensus       137 ~p~~~~~~~~lg~~~~~~g~-------------------~~~A~~~~~~al~~~p~~a~~~  178 (184)
T 3vtx_A          137 KPGFIRAYQSIGLAYEGKGL-------------------RDEAVKYFKKALEKEEKKAKYE  178 (184)
T ss_dssp             CTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHTTHHHHHHC
T ss_pred             cchhhhHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHhCCccCHHHH
Confidence            99999999999999999999                   9999999999999999987654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.90  E-value=1.1e-22  Score=190.74  Aligned_cols=170  Identities=16%  Similarity=0.090  Sum_probs=160.2

Q ss_pred             hhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010976          130 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN  209 (496)
Q Consensus       130 ~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~  209 (496)
                      ..+...|++++|+..|+++++++|+++.+++++|.++..+|+              +++|+..|+++++++|++..++++
T Consensus        13 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~   78 (217)
T 2pl2_A           13 VQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGL--------------VNPALENGKTLVARTPRYLGGYMV   78 (217)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCcHHHHHH
Confidence            346678999999999999999999999999999999999999              999999999999999999999999


Q ss_pred             HHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHH
Q 010976          210 WAIAISDRAKMR-----------GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA  278 (496)
Q Consensus       210 lg~~~~~~~~~~-----------g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~A  278 (496)
                      +|.++..    +           |++++|+       ..|+++++++|+++.+++++|.++..+|++          ++|
T Consensus        79 lg~~~~~----~~~~~~~~~~~~g~~~~A~-------~~~~~al~~~P~~~~~~~~lg~~~~~~g~~----------~~A  137 (217)
T 2pl2_A           79 LSEAYVA----LYRQAEDRERGKGYLEQAL-------SVLKDAERVNPRYAPLHLQRGLVYALLGER----------DKA  137 (217)
T ss_dssp             HHHHHHH----HHHTCSSHHHHHHHHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHH
T ss_pred             HHHHHHH----hhhhhhhhcccccCHHHHH-------HHHHHHHHhCcccHHHHHHHHHHHHHcCCh----------HHH
Confidence            9999999    7           7777777       899999999999999999999999999999          999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHh
Q 010976          279 ISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL  354 (496)
Q Consensus       279 i~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~  354 (496)
                      +..|+++++++ +++.+++++|.+|..+|+                   +.+|..+|+++++++|++......+..
T Consensus       138 ~~~~~~al~~~-~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~al~~~P~~~~~~~~la~  193 (217)
T 2pl2_A          138 EASLKQALALE-DTPEIRSALAELYLSMGR-------------------LDEALAQYAKALEQAPKDLDLRVRYAS  193 (217)
T ss_dssp             HHHHHHHHHHC-CCHHHHHHHHHHHHHHTC-------------------HHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHhcc-cchHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            99999999999 999999999999999999                   899999999999999999866555544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.90  E-value=2.8e-22  Score=188.06  Aligned_cols=177  Identities=14%  Similarity=0.141  Sum_probs=154.4

Q ss_pred             hhhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------
Q 010976          108 HQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQES--------  169 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~--------  169 (496)
                      +...|++++|+..+.+++...          +..+..+|++++|+..|+++++++|+++.+++++|.++..+        
T Consensus        15 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~   94 (217)
T 2pl2_A           15 LYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRE   94 (217)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhc
Confidence            456789999999999999876          34566789999999999999999999999999999999999        


Q ss_pred             ---cCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 010976          170 ---ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW  246 (496)
Q Consensus       170 ---~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P  246 (496)
                         |+              +++|+..|+++++++|++..+++++|.++..    +|++++|+       ..|+++++++ 
T Consensus        95 ~~~g~--------------~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~-------~~~~~al~~~-  148 (217)
T 2pl2_A           95 RGKGY--------------LEQALSVLKDAERVNPRYAPLHLQRGLVYAL----LGERDKAE-------ASLKQALALE-  148 (217)
T ss_dssp             HHHHH--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHC-
T ss_pred             ccccC--------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChHHHH-------HHHHHHHhcc-
Confidence               88              9999999999999999999999999999999    99999999       8999999999 


Q ss_pred             CCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHH
Q 010976          247 NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNE  326 (496)
Q Consensus       247 ~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~  326 (496)
                      +++.+++++|.+|..+|++          ++|+..|+++++++|+++.+++++|.++..+|+                  
T Consensus       149 ~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~------------------  200 (217)
T 2pl2_A          149 DTPEIRSALAELYLSMGRL----------DEALAQYAKALEQAPKDLDLRVRYASALLLKGK------------------  200 (217)
T ss_dssp             CCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------------
T ss_pred             cchHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC------------------
Confidence            9999999999999999999          999999999999999999999999999999998                  


Q ss_pred             HHHHHHHHHHHHH
Q 010976          327 LYSQSAIYIAAAH  339 (496)
Q Consensus       327 ~~~~A~~~~~~a~  339 (496)
                       +.+|..+|+++.
T Consensus       201 -~~~A~~~~~~~~  212 (217)
T 2pl2_A          201 -AEEAARAAALEH  212 (217)
T ss_dssp             -------------
T ss_pred             -HHHHHHHHHHHh
Confidence             667777776654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.89  E-value=3.8e-22  Score=203.61  Aligned_cols=192  Identities=11%  Similarity=0.025  Sum_probs=162.5

Q ss_pred             hhhhhcHHHHHHHHHHhhccc----------hhhhHhhcc-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCC
Q 010976          108 HQLAEQNNAAMELINSVTGVD----------EEGRSRQRI-LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLD  176 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~-~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~  176 (496)
                      +...++++.|+..+.+++...          +..+..+|+ +++|+..|+++++++|++..+|+++|.++..+|+     
T Consensus       107 ~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~-----  181 (382)
T 2h6f_A          107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD-----  181 (382)
T ss_dssp             HHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-----
T ss_pred             HHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC-----
Confidence            345688999999999999877          334556786 9999999999999999999999999999999999     


Q ss_pred             CCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010976          177 STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG  256 (496)
Q Consensus       177 ~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  256 (496)
                               +++|+.+|+++|+++|++..+|+++|.++..    +|++++|+       .+|+++|+++|++..+|+++|
T Consensus       182 ---------~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~----~g~~~eAl-------~~~~~al~l~P~~~~a~~~lg  241 (382)
T 2h6f_A          182 ---------PSQELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNEL-------QYVDQLLKEDVRNNSVWNQRY  241 (382)
T ss_dssp             ---------CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHH-------HHHHHHHHHCTTCHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHHhCccCHHHHHHHHHHHHH----cCChHHHH-------HHHHHHHHhCCCCHHHHHHHH
Confidence                     9999999999999999999999999999999    99999998       899999999999999999999


Q ss_pred             HHHHH-ccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHH
Q 010976          257 LALQE-LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYI  335 (496)
Q Consensus       257 ~~l~~-~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~  335 (496)
                      .+|.. .|.+++|.     ++.++.+|++|++++|++..+|+++|.++...|...                 +.++..++
T Consensus       242 ~~l~~l~~~~~eA~-----~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~-----------------~~~a~~~~  299 (382)
T 2h6f_A          242 FVISNTTGYNDRAV-----LEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSK-----------------YPNLLNQL  299 (382)
T ss_dssp             HHHHHTTCSCSHHH-----HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGG-----------------CHHHHHHH
T ss_pred             HHHHHhcCcchHHH-----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccc-----------------hHHHHHHH
Confidence            99999 66652221     133369999999999999999999999999887310                 45666666


Q ss_pred             HHHHhcCCcHHH
Q 010976          336 AAAHALKPSYSV  347 (496)
Q Consensus       336 ~~a~~l~p~~~~  347 (496)
                      .++ +.+|++..
T Consensus       300 ~~~-~~~p~~~~  310 (382)
T 2h6f_A          300 LDL-QPSHSSPY  310 (382)
T ss_dssp             HHH-TTTCCCHH
T ss_pred             HHh-ccCCCCHH
Confidence            666 77777663

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.89  E-value=4.7e-22  Score=202.95  Aligned_cols=174  Identities=12%  Similarity=0.055  Sum_probs=157.1

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA-DNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  210 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~l  210 (496)
                      +...|++++|+..|+++|+++|++..+|+++|.++..+| +              +++|+.+|+++++++|++..+|+++
T Consensus       107 ~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d--------------~~eAl~~~~~al~l~P~~~~a~~~~  172 (382)
T 2h6f_A          107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD--------------LHEEMNYITAIIEEQPKNYQVWHHR  172 (382)
T ss_dssp             HHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC--------------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccC--------------HHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            556799999999999999999999999999999999999 7              9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcC
Q 010976          211 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF  290 (496)
Q Consensus       211 g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P  290 (496)
                      |.++..    +|++++|+       .+|+++|+++|++..+|+++|.++..+|++          ++|+.+|+++|+++|
T Consensus       173 g~~~~~----~g~~~eAl-------~~~~kal~ldP~~~~a~~~lg~~~~~~g~~----------~eAl~~~~~al~l~P  231 (382)
T 2h6f_A          173 RVLVEW----LRDPSQEL-------EFIADILNQDAKNYHAWQHRQWVIQEFKLW----------DNELQYVDQLLKEDV  231 (382)
T ss_dssp             HHHHHH----HTCCTTHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHTCC----------TTHHHHHHHHHHHCT
T ss_pred             HHHHHH----ccCHHHHH-------HHHHHHHHhCccCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHhCC
Confidence            999999    99999999       899999999999999999999999999999          999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 010976          291 DFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALR  353 (496)
Q Consensus       291 ~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~  353 (496)
                      ++..+|+++|.++..++..             .....+..++.+|.+++.++|++......+.
T Consensus       232 ~~~~a~~~lg~~l~~l~~~-------------~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~  281 (382)
T 2h6f_A          232 RNNSVWNQRYFVISNTTGY-------------NDRAVLEREVQYTLEMIKLVPHNESAWNYLK  281 (382)
T ss_dssp             TCHHHHHHHHHHHHHTTCS-------------CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCc-------------chHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            9999999999999994431             0111134557899999999999985554444

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.88  E-value=5.5e-22  Score=217.81  Aligned_cols=162  Identities=27%  Similarity=0.332  Sum_probs=151.6

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY  208 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~  208 (496)
                      +..+..+|++++|+.+|+++++++|+++.+|+++|.+|..+|+              +++|+++|++|++++|+++.+|+
T Consensus        16 G~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~--------------~~eA~~~~~~Al~l~P~~~~a~~   81 (723)
T 4gyw_A           16 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------------LQEALMHYKEAIRISPTFADAYS   81 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHH
Confidence            4446778999999999999999999999999999999999999              99999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh
Q 010976          209 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  288 (496)
Q Consensus       209 ~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l  288 (496)
                      ++|.+|..    +|++++|+       ++|+++++++|+++.+|+++|.+|..+|++          ++|+..|++|+++
T Consensus        82 nLg~~l~~----~g~~~~A~-------~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~----------~eAi~~~~~Al~l  140 (723)
T 4gyw_A           82 NMGNTLKE----MQDVQGAL-------QCYTRAIQINPAFADAHSNLASIHKDSGNI----------PEAIASYRTALKL  140 (723)
T ss_dssp             HHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHH
T ss_pred             HHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHh
Confidence            99999999    99999999       899999999999999999999999999999          9999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976          289 QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  344 (496)
Q Consensus       289 ~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~  344 (496)
                      +|+++.++++||.+|..+|+                   +.+|..+|++++++.|+
T Consensus       141 ~P~~~~a~~~L~~~l~~~g~-------------------~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          141 KPDFPDAYCNLAHCLQIVCD-------------------WTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             CSCCHHHHHHHHHHHHHTTC-------------------CTTHHHHHHHHHHHHHH
T ss_pred             CCCChHHHhhhhhHHHhccc-------------------HHHHHHHHHHHHHhChh
Confidence            99999999999999999998                   56666667776665543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.88  E-value=3.4e-21  Score=180.94  Aligned_cols=194  Identities=16%  Similarity=0.240  Sum_probs=167.4

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHH
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNP-EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF  207 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~  207 (496)
                      +..+...|++++|+..|+++++++| .+..+++++|.++..+|+              +++|+..|+++++++|++..++
T Consensus        14 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~   79 (228)
T 4i17_A           14 GNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKK--------------YKEAADYFDIAIKKNYNLANAY   79 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHTTCSHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhc--------------HHHHHHHHHHHHHhCcchHHHH
Confidence            3446678999999999999999999 999999999999999999              9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHccCcchHHHhhhhHHHHHH
Q 010976          208 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP-------QALNNWGLALQELSAIVPAREKQTIVRTAIS  280 (496)
Q Consensus       208 ~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~-------~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~  280 (496)
                      +++|.+|..    +|++++|+       ..|+++++++|+++       .+++++|.++..+|++          ++|+.
T Consensus        80 ~~l~~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~A~~  138 (228)
T 4i17_A           80 IGKSAAYRD----MKNNQEYI-------ATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNI----------EKAEE  138 (228)
T ss_dssp             HHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHH
T ss_pred             HHHHHHHHH----cccHHHHH-------HHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccH----------HHHHH
Confidence            999999999    99999999       89999999999999       6689999999999998          99999


Q ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHcchhHHhccCCCCCCC--------CCcHHHHHHHHHHHHHHHhcCCcHHHHHH
Q 010976          281 KFRAAIQLQFD--FHRAIYNLGTVLYGLAEDTLRTGGTVNPRE--------VSPNELYSQSAIYIAAAHALKPSYSVYSS  350 (496)
Q Consensus       281 ~~~~Al~l~P~--~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~A~~~~~~a~~l~p~~~~y~~  350 (496)
                      .|+++++++|+  ++.+++++|.+|...|+........+....        ......|.+|..+|+++++++|++.....
T Consensus       139 ~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~  218 (228)
T 4i17_A          139 NYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQ  218 (228)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Confidence            99999999999  999999999999999986222211111000        00112568999999999999999998777


Q ss_pred             HHHhhhc
Q 010976          351 ALRLVRS  357 (496)
Q Consensus       351 al~~~~~  357 (496)
                      .+..++.
T Consensus       219 ~l~~i~~  225 (228)
T 4i17_A          219 MQDQVKA  225 (228)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            7766554

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.86  E-value=3.3e-20  Score=188.20  Aligned_cols=164  Identities=21%  Similarity=0.194  Sum_probs=114.0

Q ss_pred             hhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 010976          110 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS  179 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~  179 (496)
                      ..|++++|+..+.+++...          +..+...|++++|+..|+++++++|++..++.++|.++...|+        
T Consensus       147 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--------  218 (388)
T 1w3b_A          147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI--------  218 (388)
T ss_dssp             TTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--------
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--------
Confidence            4566677777666666543          2234456777777777777777777777777777777777777        


Q ss_pred             cchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010976          180 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL  259 (496)
Q Consensus       180 ~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  259 (496)
                            +++|+..|++++.++|++..+++++|.++..    .|++++|+       ..|+++++++|+++.+++++|.++
T Consensus       219 ------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~l~~~~  281 (388)
T 1w3b_A          219 ------FDRAVAAYLRALSLSPNHAVVHGNLACVYYE----QGLIDLAI-------DTYRRAIELQPHFPDAYCNLANAL  281 (388)
T ss_dssp             ------TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHTCSSCHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHhhCCCCHHHHHHHHHHH
Confidence                  7777777777777777777777777777777    77777777       677777777777777777777777


Q ss_pred             HHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          260 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       260 ~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                      ...|++          ++|+..|+++++++|++..+++++|.++...|+
T Consensus       282 ~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  320 (388)
T 1w3b_A          282 KEKGSV----------AEAEDCYNTALRLCPTHADSLNNLANIKREQGN  320 (388)
T ss_dssp             HHHSCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred             HHcCCH----------HHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC
Confidence            777777          666666666666666666666666666666665

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.86  E-value=9.4e-20  Score=179.03  Aligned_cols=202  Identities=13%  Similarity=0.085  Sum_probs=154.3

Q ss_pred             hhhhhcHHHHHHHHHHhhccc----------hhhhHhhc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCC
Q 010976          108 HQLAEQNNAAMELINSVTGVD----------EEGRSRQR-ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLD  176 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g-~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~  176 (496)
                      +...+++++|+..+.+++...          +..+...| ++++|+.+|+++++++|++..++..+|.++...|+     
T Consensus        66 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-----  140 (330)
T 3hym_B           66 LVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE-----  140 (330)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC-----
T ss_pred             HHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC-----
Confidence            345677888888887777655          23345567 78888888888888888888888888888888888     


Q ss_pred             CCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010976          177 STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG  256 (496)
Q Consensus       177 ~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  256 (496)
                               +++|+..|+++++++|++..+++.+|.++..    .|++++|+       ..|+++++.+|+++.+++++|
T Consensus       141 ---------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~~al~~~~~~~~~~~~l~  200 (330)
T 3hym_B          141 ---------HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL----TNNSKLAE-------RFFSQALSIAPEDPFVMHEVG  200 (330)
T ss_dssp             ---------HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHTTCTTCHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHHhccccHHHHHHHHHHHHH----HhhHHHHH-------HHHHHHHHhCCCChHHHHHHH
Confidence                     8888888888888888888888888888888    88888887       788888888899999999999


Q ss_pred             HHHHHccCcchHH---------------------------------HhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010976          257 LALQELSAIVPAR---------------------------------EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL  303 (496)
Q Consensus       257 ~~l~~~g~~~~A~---------------------------------~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~  303 (496)
                      .++...|++++|.                                 ...|++++|+..|+++++++|++..+++++|.++
T Consensus       201 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  280 (330)
T 3hym_B          201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIH  280 (330)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHH
Confidence            9999998885551                                 1346667777777777777777777777777777


Q ss_pred             HHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 010976          304 YGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALR  353 (496)
Q Consensus       304 ~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~  353 (496)
                      ..+|+                   +.+|..+|+++++++|++......+.
T Consensus       281 ~~~g~-------------------~~~A~~~~~~al~~~p~~~~~~~~l~  311 (330)
T 3hym_B          281 SLMGN-------------------FENAVDYFHTALGLRRDDTFSVTMLG  311 (330)
T ss_dssp             HHHTC-------------------HHHHHHHHHTTTTTCSCCHHHHHHHH
T ss_pred             HHhcc-------------------HHHHHHHHHHHHccCCCchHHHHHHH
Confidence            77776                   77777888888888887774444443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.85  E-value=9.1e-20  Score=184.90  Aligned_cols=197  Identities=25%  Similarity=0.224  Sum_probs=133.5

Q ss_pred             hhhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 010976          108 HQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS  177 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~  177 (496)
                      +...|++++|+..+.+++...          +..+...|++++|+..|+++++++|++..++..+|.++..+|+      
T Consensus        77 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~------  150 (388)
T 1w3b_A           77 YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGR------  150 (388)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSC------
T ss_pred             HHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC------
Confidence            345666777777777666544          2234455666777777777777777776677777777766666      


Q ss_pred             CCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976          178 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL  257 (496)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  257 (496)
                              +++|++.|+++++++|++..+|+++|.++..    .|++++|+       ..|+++++++|++..+++++|.
T Consensus       151 --------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~lg~  211 (388)
T 1w3b_A          151 --------LEEAKACYLKAIETQPNFAVAWSNLGCVFNA----QGEIWLAI-------HHFEKAVTLDPNFLDAYINLGN  211 (388)
T ss_dssp             --------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHhcCCCcHHHHHHHHH
Confidence                    7777777777777777777777777777777    77777777       4555555555555555555555


Q ss_pred             HHHHccCcchHH------------------------HhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhc
Q 010976          258 ALQELSAIVPAR------------------------EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRT  313 (496)
Q Consensus       258 ~l~~~g~~~~A~------------------------~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~  313 (496)
                      ++...|++++|.                        ...|++++|+..|+++++++|+++.+++++|.++...|+     
T Consensus       212 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-----  286 (388)
T 1w3b_A          212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS-----  286 (388)
T ss_dssp             HHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC-----
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-----
Confidence            555555553330                        022333777777777777777777777777777777777     


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHH
Q 010976          314 GGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVY  348 (496)
Q Consensus       314 ~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y  348 (496)
                                    +.+|..+|+++++++|.+...
T Consensus       287 --------------~~~A~~~~~~al~~~p~~~~~  307 (388)
T 1w3b_A          287 --------------VAEAEDCYNTALRLCPTHADS  307 (388)
T ss_dssp             --------------HHHHHHHHHHHHHHCTTCHHH
T ss_pred             --------------HHHHHHHHHHHHhhCcccHHH
Confidence                          677788888888887776643

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.85  E-value=6.4e-20  Score=172.47  Aligned_cols=196  Identities=20%  Similarity=0.178  Sum_probs=171.0

Q ss_pred             hhhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 010976          108 HQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS  177 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~  177 (496)
                      +...++++.|+..+.+++...          +..+...|++++|+..|+++++.+|++..++..+|.++...|+      
T Consensus        33 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~------  106 (243)
T 2q7f_A           33 GSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEM------  106 (243)
T ss_dssp             ---------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------
T ss_pred             HHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc------
Confidence            345566677777777666544          3456678999999999999999999999999999999999999      


Q ss_pred             CCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976          178 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL  257 (496)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  257 (496)
                              +++|+..|+++++++|++..+++.+|.++..    .|++++|+       ..|+++++.+|++..+++++|.
T Consensus       107 --------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~l~~  167 (243)
T 2q7f_A          107 --------YKEAKDMFEKALRAGMENGDLFYMLGTVLVK----LEQPKLAL-------PYLQRAVELNENDTEARFQFGM  167 (243)
T ss_dssp             --------HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH----TSCHHHHH-------HHHHHHHHHCTTCHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHH-------HHHHHHHHhCCccHHHHHHHHH
Confidence                    9999999999999999999999999999999    99999999       8899999999999999999999


Q ss_pred             HHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHH
Q 010976          258 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAA  337 (496)
Q Consensus       258 ~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~  337 (496)
                      ++...|++          ++|+..|+++++.+|++..+++++|.++...|+                   +..|..+|++
T Consensus       168 ~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-------------------~~~A~~~~~~  218 (243)
T 2q7f_A          168 CLANEGML----------DEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN-------------------REKALEMLDK  218 (243)
T ss_dssp             HHHHHTCC----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------TTHHHHHHHH
T ss_pred             HHHHcCCH----------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC-------------------HHHHHHHHHH
Confidence            99999999          999999999999999999999999999999998                   8899999999


Q ss_pred             HHhcCCcHHHHHHHHHhhhc
Q 010976          338 AHALKPSYSVYSSALRLVRS  357 (496)
Q Consensus       338 a~~l~p~~~~y~~al~~~~~  357 (496)
                      +++++|++......+..+..
T Consensus       219 ~~~~~p~~~~~~~~~~~l~~  238 (243)
T 2q7f_A          219 AIDIQPDHMLALHAKKLLGH  238 (243)
T ss_dssp             HHHHCTTCHHHHHHHTC---
T ss_pred             HHccCcchHHHHHHHHHHHh
Confidence            99999999977766655443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.85  E-value=4.4e-21  Score=169.31  Aligned_cols=142  Identities=12%  Similarity=-0.032  Sum_probs=135.2

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  211 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  211 (496)
                      +..+|++++|+..|++++..+|+++.+++.+|.+|+.+|+              +++|+++|+++++++|+++.+|+++|
T Consensus         7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~--------------~~~A~~~~~~al~~~p~~~~a~~~lg   72 (150)
T 4ga2_A            7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKE--------------YDLAKKYICTYINVQERDPKAHRFLG   72 (150)
T ss_dssp             CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4457999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHH-HHHHHHhcC
Q 010976          212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISK-FRAAIQLQF  290 (496)
Q Consensus       212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~-~~~Al~l~P  290 (496)
                      .+|..    +|++++|+       .+|+++++++|+++.+++++|.+|..+|++          ++|+.. +++|++++|
T Consensus        73 ~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~la~~~~~~~~~----------~~aa~~~~~~al~l~P  131 (150)
T 4ga2_A           73 LLYEL----EENTDKAV-------ECYRRSVELNPTQKDLVLKIAELLCKNDVT----------DGRAKYWVERAAKLFP  131 (150)
T ss_dssp             HHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHCSS----------SSHHHHHHHHHHHHST
T ss_pred             HHHHH----cCchHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHhCc
Confidence            99999    99999999       899999999999999999999999999999          887765 599999999


Q ss_pred             CCHHHHHHHHHHHHHcch
Q 010976          291 DFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       291 ~~~~a~~~lg~~~~~~g~  308 (496)
                      +++.++..++.++...|+
T Consensus       132 ~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          132 GSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             TCHHHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHHHHHhCc
Confidence            999999999999998885

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.84  E-value=5.1e-20  Score=193.40  Aligned_cols=192  Identities=16%  Similarity=0.145  Sum_probs=167.8

Q ss_pred             hhcHHHHHHHHHHhhccc----------hhhhHhhccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 010976          111 AEQNNAAMELINSVTGVD----------EEGRSRQRIL-TFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS  179 (496)
Q Consensus       111 ~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~-~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~  179 (496)
                      ...++.++..+.......          +..+...|++ ++|+.+|+++++++|+++.+|+++|.+|..+|+        
T Consensus        81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--------  152 (474)
T 4abn_A           81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGD--------  152 (474)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------
T ss_pred             HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--------
Confidence            345666666666554433          4456677999 999999999999999999999999999999999        


Q ss_pred             cchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976          180 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR--GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL  257 (496)
Q Consensus       180 ~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~--g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  257 (496)
                            +++|+.+|+++++++|+ ..+++++|.+|..    +  +...+....|++|+..|+++++++|+++.+|+++|.
T Consensus       153 ------~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~----~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  221 (474)
T 4abn_A          153 ------VTSAHTCFSGALTHCKN-KVSLQNLSMVLRQ----LQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGN  221 (474)
T ss_dssp             ------HHHHHHHHHHHHTTCCC-HHHHHHHHHHHTT----CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHhhCCC-HHHHHHHHHHHHH----hccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                  99999999999999999 7999999999998    7  344444444445559999999999999999999999


Q ss_pred             HHHHc--------cCcchHHHhhhhHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHH
Q 010976          258 ALQEL--------SAIVPAREKQTIVRTAISKFRAAIQLQF---DFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNE  326 (496)
Q Consensus       258 ~l~~~--------g~~~~A~~~~~~~~~Ai~~~~~Al~l~P---~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~  326 (496)
                      +|..+        |++          ++|+.+|+++++++|   +++.+++++|.+|..+|+                  
T Consensus       222 ~~~~~~~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~------------------  273 (474)
T 4abn_A          222 AYLSLYFNTGQNPKIS----------QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES------------------  273 (474)
T ss_dssp             HHHHHHHHTTCCHHHH----------HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHhhccccchH----------HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC------------------
Confidence            99999        888          999999999999999   999999999999999999                  


Q ss_pred             HHHHHHHHHHHHHhcCCcHHHHHH
Q 010976          327 LYSQSAIYIAAAHALKPSYSVYSS  350 (496)
Q Consensus       327 ~~~~A~~~~~~a~~l~p~~~~y~~  350 (496)
                       |.+|..+|+++++++|++.....
T Consensus       274 -~~~A~~~~~~al~l~p~~~~a~~  296 (474)
T 4abn_A          274 -YGEALEGFSQAAALDPAWPEPQQ  296 (474)
T ss_dssp             -HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             -HHHHHHHHHHHHHhCCCCHHHHH
Confidence             99999999999999999884433

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1.6e-19  Score=170.81  Aligned_cols=192  Identities=17%  Similarity=0.147  Sum_probs=173.7

Q ss_pred             hhhhhcHHHHHHHHHHhhccc---------hhhhHhhccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcC
Q 010976          108 HQLAEQNNAAMELINSVTGVD---------EEGRSRQRILTFAAKRYANAIERNPED-------YDALYNWALVLQESAD  171 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~---------~~~~~~~g~~~~Ai~~~~~al~~~P~~-------~~a~~~lg~~~~~~~~  171 (496)
                      +...+++++|+..+.+++...         +..+...|++++|+..|+++++++|++       +.+++.+|.++..+|+
T Consensus        15 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   94 (258)
T 3uq3_A           15 FYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGD   94 (258)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHccc
Confidence            456788999999998887654         445677899999999999999999887       7999999999999999


Q ss_pred             CCCCCCCCcchhhhHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHHHHHcCCHH
Q 010976          172 NVSLDSTSPSKDALLEEACKKYDEATR--------------------------LCPTLHDAFYNWAIAISDRAKMRGRTK  225 (496)
Q Consensus       172 ~~~~~~~~~~~~~~~~~A~~~~~~Al~--------------------------l~P~~~~a~~~lg~~~~~~~~~~g~~~  225 (496)
                                    +++|+..|++++.                          .+|.+..+++++|.++..    .|+++
T Consensus        95 --------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  156 (258)
T 3uq3_A           95 --------------LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT----KSDWP  156 (258)
T ss_dssp             --------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----TTCHH
T ss_pred             --------------HHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH----hcCHH
Confidence                          8888888888888                          777788999999999999    99999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 010976          226 EAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG  305 (496)
Q Consensus       226 eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~  305 (496)
                      +|+       ..|++++.++|.++.+++++|.++..+|++          ++|+..|+++++++|+++.+++++|.++..
T Consensus       157 ~A~-------~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  219 (258)
T 3uq3_A          157 NAV-------KAYTEMIKRAPEDARGYSNRAAALAKLMSF----------PEAIADCNKAIEKDPNFVRAYIRKATAQIA  219 (258)
T ss_dssp             HHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHH-------HHHHHHHhcCcccHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            999       899999999999999999999999999999          999999999999999999999999999999


Q ss_pred             cchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcC------CcHHHHHHHHH
Q 010976          306 LAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK------PSYSVYSSALR  353 (496)
Q Consensus       306 ~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~------p~~~~y~~al~  353 (496)
                      +|+                   +..|..+|+++++++      |.+......+.
T Consensus       220 ~g~-------------------~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~  254 (258)
T 3uq3_A          220 VKE-------------------YASALETLDAARTKDAEVNNGSSAREIDQLYY  254 (258)
T ss_dssp             TTC-------------------HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred             Hhh-------------------HHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence            999                   899999999999999      88776665554

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.84  E-value=4.2e-19  Score=177.73  Aligned_cols=193  Identities=16%  Similarity=0.164  Sum_probs=157.5

Q ss_pred             hhhcHHHHHH-HHHHhhccc--------------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCC
Q 010976          110 LAEQNNAAME-LINSVTGVD--------------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS  174 (496)
Q Consensus       110 ~~~~~~~A~~-~~~~~l~~~--------------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~  174 (496)
                      ..++++.|+. .+.+++...              +..+...|++++|+..|+++++.+|++..+++.+|.++...|+   
T Consensus        37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---  113 (368)
T 1fch_A           37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ---  113 (368)
T ss_dssp             ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC---
Confidence            3455555655 555444332              3345567888888888888888888888888888888888888   


Q ss_pred             CCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH----------------------
Q 010976          175 LDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK----------------------  232 (496)
Q Consensus       175 ~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~----------------------  232 (496)
                                 +++|+..|+++++++|++..+++++|.++..    .|++++|++.|+                      
T Consensus       114 -----------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (368)
T 1fch_A          114 -----------ELLAISALRRCLELKPDNQTALMALAVSFTN----ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG  178 (368)
T ss_dssp             -----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSTTTGGGCC--------
T ss_pred             -----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhh
Confidence                       8888888888888888888888888888888    888888876665                      


Q ss_pred             --------------------HHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcC
Q 010976          233 --------------------QATKNYEKAVQLNWN--SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF  290 (496)
Q Consensus       233 --------------------~A~~~~~~Al~l~P~--~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P  290 (496)
                                          +|+..|+++++++|+  ++.+++++|.++...|++          ++|+..|+++++++|
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~  248 (368)
T 1fch_A          179 AGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEY----------DKAVDCFTAALSVRP  248 (368)
T ss_dssp             -------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCT
T ss_pred             hcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCc
Confidence                                456789999999999  899999999999999999          999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHH
Q 010976          291 DFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS  349 (496)
Q Consensus       291 ~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~  349 (496)
                      +++.+++++|.++...|+                   +..|..+|+++++++|++....
T Consensus       249 ~~~~~~~~l~~~~~~~g~-------------------~~~A~~~~~~al~~~~~~~~~~  288 (368)
T 1fch_A          249 NDYLLWNKLGATLANGNQ-------------------SEEAVAAYRRALELQPGYIRSR  288 (368)
T ss_dssp             TCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCCCcHHHH
Confidence            999999999999999998                   8899999999999999877433

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.84  E-value=6e-20  Score=170.92  Aligned_cols=165  Identities=18%  Similarity=0.102  Sum_probs=146.2

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHH
Q 010976          131 GRSRQRILTFAAKRYANAIERNPEDYDALYN----------------WALVLQESADNVSLDSTSPSKDALLEEACKKYD  194 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~----------------lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  194 (496)
                      .+...|++++|+..|+++++++|+++.+++.                +|.+|..+|+              +++|+..|+
T Consensus        13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~   78 (208)
T 3urz_A           13 AAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN--------------YDKAYLFYK   78 (208)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC--------------HHHHHHHHH
Confidence            3456799999999999999999999999999                9999999999              999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhh
Q 010976          195 EATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTI  274 (496)
Q Consensus       195 ~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~  274 (496)
                      ++++++|++..+++++|.++..    +|++++|+       ..|+++++++|+++.+++++|.+|...|+.        .
T Consensus        79 ~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~-------~~~~~al~~~P~~~~a~~~lg~~~~~~~~~--------~  139 (208)
T 3urz_A           79 ELLQKAPNNVDCLEACAEMQVC----RGQEKDAL-------RMYEKILQLEADNLAANIFLGNYYYLTAEQ--------E  139 (208)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHHHH--------H
T ss_pred             HHHHHCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCCHHHHHHHHHHHHHHhHH--------H
Confidence            9999999999999999999999    99999999       899999999999999999999999887653        2


Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHH
Q 010976          275 VRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVY  348 (496)
Q Consensus       275 ~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y  348 (496)
                      ...++..|++++..+|. ..+++++|.++..+|+                   |.+|+.+|+++++++|+....
T Consensus       140 ~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~-------------------~~~A~~~~~~al~l~P~~~~~  193 (208)
T 3urz_A          140 KKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTR-------------------YEKARNSLQKVILRFPSTEAQ  193 (208)
T ss_dssp             HHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHT-------------------HHHHHHHHHHHTTTSCCHHHH
T ss_pred             HHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccC-------------------HHHHHHHHHHHHHhCCCHHHH
Confidence            26778888888754432 3578999999999998                   999999999999999987643

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.83  E-value=6.7e-20  Score=201.20  Aligned_cols=146  Identities=25%  Similarity=0.364  Sum_probs=139.3

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 010976          151 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL  230 (496)
Q Consensus       151 ~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~  230 (496)
                      ..|++++++++||.+|..+|+              +++|+++|++|++++|++..+|++||.+|..    +|++++|+  
T Consensus         4 s~P~~a~al~nLG~~~~~~G~--------------~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~----~g~~~eA~--   63 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGN--------------IEEAVRLYRKALEVFPEFAAAHSNLASVLQQ----QGKLQEAL--   63 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHH--
T ss_pred             CCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH--
Confidence            469999999999999999999              9999999999999999999999999999999    99999999  


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhH
Q 010976          231 WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT  310 (496)
Q Consensus       231 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~  310 (496)
                           ..|+++++++|+++.+|+++|.+|..+|++          ++|+.+|++|++++|++..++++||.+|..+|+  
T Consensus        64 -----~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~----------~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~--  126 (723)
T 4gyw_A           64 -----MHYKEAIRISPTFADAYSNMGNTLKEMQDV----------QGALQCYTRAIQINPAFADAHSNLASIHKDSGN--  126 (723)
T ss_dssp             -----HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--
T ss_pred             -----HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Confidence                 899999999999999999999999999999          999999999999999999999999999999999  


Q ss_pred             HhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHH
Q 010976          311 LRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS  350 (496)
Q Consensus       311 ~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~  350 (496)
                                       +.+|+.+|+++++++|++.....
T Consensus       127 -----------------~~eAi~~~~~Al~l~P~~~~a~~  149 (723)
T 4gyw_A          127 -----------------IPEAIASYRTALKLKPDFPDAYC  149 (723)
T ss_dssp             -----------------HHHHHHHHHHHHHHCSCCHHHHH
T ss_pred             -----------------HHHHHHHHHHHHHhCCCChHHHh
Confidence                             99999999999999999884433

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.83  E-value=8.9e-20  Score=183.22  Aligned_cols=188  Identities=14%  Similarity=0.153  Sum_probs=164.9

Q ss_pred             hhhhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCC
Q 010976          107 PHQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLD  176 (496)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~  176 (496)
                      .+...|++++|+..+.+++...          +..+...|++++|+..|+++++++|++..+++++|.+|..+|+     
T Consensus        74 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-----  148 (365)
T 4eqf_A           74 KRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH-----  148 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-----
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcccc-----
Confidence            3456899999999999998766          4456778999999999999999999999999999999999999     


Q ss_pred             CCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 010976          177 STSPSKDALLEEACKKYDEATRLCPTLHDAFYNW----------AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW  246 (496)
Q Consensus       177 ~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~l----------g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P  246 (496)
                               +++|+..|+++++++|++..++.++          |.++..    .|++++|+       ..|+++++++|
T Consensus       149 ---------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~-------~~~~~al~~~p  208 (365)
T 4eqf_A          149 ---------QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD----SSVLEGVK-------ELYLEAAHQNG  208 (365)
T ss_dssp             ---------HHHHHHHHHHHHHHCHHHHCC-------------------C----CHHHHHHH-------HHHHHHHHHSC
T ss_pred             ---------HHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhh----hhhHHHHH-------HHHHHHHHhCc
Confidence                     9999999999999999877776665          888888    88888888       89999999999


Q ss_pred             C--CHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCc
Q 010976          247 N--SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSP  324 (496)
Q Consensus       247 ~--~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~  324 (496)
                      +  ++.+++++|.++..+|++          ++|+..|+++++++|+++.+++++|.+|...|+                
T Consensus       209 ~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~----------------  262 (365)
T 4eqf_A          209 DMIDPDLQTGLGVLFHLSGEF----------NRAIDAFNAALTVRPEDYSLWNRLGATLANGDR----------------  262 (365)
T ss_dssp             SSCCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------------
T ss_pred             CccCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------------
Confidence            9  999999999999999999          999999999999999999999999999999998                


Q ss_pred             HHHHHHHHHHHHHHHhcCCcHHHH
Q 010976          325 NELYSQSAIYIAAAHALKPSYSVY  348 (496)
Q Consensus       325 ~~~~~~A~~~~~~a~~l~p~~~~y  348 (496)
                         +.+|..+|+++++++|++...
T Consensus       263 ---~~~A~~~~~~al~~~p~~~~~  283 (365)
T 4eqf_A          263 ---SEEAVEAYTRALEIQPGFIRS  283 (365)
T ss_dssp             ---HHHHHHHHHHHHHHCTTCHHH
T ss_pred             ---HHHHHHHHHHHHhcCCCchHH
Confidence               889999999999999987743

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.83  E-value=1.9e-18  Score=171.31  Aligned_cols=208  Identities=13%  Similarity=0.030  Sum_probs=169.6

Q ss_pred             CChhhhhhcHHHHHHHHHHhhccch-------------------------hhhHhhccHHHHHHHHHHHHHhCCCCHHHH
Q 010976          105 NTPHQLAEQNNAAMELINSVTGVDE-------------------------EGRSRQRILTFAAKRYANAIERNPEDYDAL  159 (496)
Q Consensus       105 ~~~~~~~~~~~~A~~~~~~~l~~~~-------------------------~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~  159 (496)
                      ...+...|+++.|+..+.+++....                         ..+...|++++|+..|+++++.+|+++.++
T Consensus        78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  157 (359)
T 3ieg_A           78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELR  157 (359)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence            3344567899999999998887654                         445667999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 010976          160 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE  239 (496)
Q Consensus       160 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~  239 (496)
                      ..+|.++...|+              +++|+..|++++.++|++..+++++|.++..    .|++++|+       ..|+
T Consensus       158 ~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~-------~~~~  212 (359)
T 3ieg_A          158 ELRAECFIKEGE--------------PRKAISDLKAASKLKSDNTEAFYKISTLYYQ----LGDHELSL-------SEVR  212 (359)
T ss_dssp             HHHHHHHHHTTC--------------HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH----HTCHHHHH-------HHHH
T ss_pred             HHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHH
Confidence            999999999999              9999999999999999999999999999999    99999999       4455


Q ss_pred             HHHhcCCCCHHHHH------------HHHHHHHHccCcchH----------------------------HHhhhhHHHHH
Q 010976          240 KAVQLNWNSPQALN------------NWGLALQELSAIVPA----------------------------REKQTIVRTAI  279 (496)
Q Consensus       240 ~Al~l~P~~~~a~~------------~lg~~l~~~g~~~~A----------------------------~~~~~~~~~Ai  279 (496)
                      ++++.+|++..++.            .+|.++...|++++|                            ....|++++|+
T Consensus       213 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  292 (359)
T 3ieg_A          213 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI  292 (359)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence            55555555544432            224445555555444                            01244459999


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhhh
Q 010976          280 SKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVR  356 (496)
Q Consensus       280 ~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~~~  356 (496)
                      ..|+++++++|+++.+++++|.++...|+                   +.+|..+|+++++++|++......+..+.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------------------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  350 (359)
T 3ieg_A          293 RICSEVLQMEPDNVNALKDRAEAYLIEEM-------------------YDEAIQDYEAAQEHNENDQQIREGLEKAQ  350 (359)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            99999999999999999999999999998                   89999999999999999887666655443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.82  E-value=9.1e-20  Score=156.08  Aligned_cols=122  Identities=16%  Similarity=0.114  Sum_probs=115.8

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHH
Q 010976          147 NAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKE  226 (496)
Q Consensus       147 ~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~e  226 (496)
                      ++..++|+.++++.++|.+|+..|+              |++|+++|+++++++|+++.+|+++|.+|..    +|++++
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~   65 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGD--------------YPTAMRHYNEAVKRDPENAILYSNRAACLTK----LMEFQR   65 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh----hccHHH
Confidence            3456899999999999999999999              9999999999999999999999999999999    999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010976          227 AEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL  303 (496)
Q Consensus       227 A~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~  303 (496)
                      |+       ..|+++++++|+++.+|+++|.+|..+|++          ++|+..|+++++++|++..++.+|+.++
T Consensus        66 A~-------~~~~~al~~~p~~~~a~~~lg~~~~~~~~~----------~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           66 AL-------DDCDTCIRLDSKFIKGYIRKAACLVAMREW----------SKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HH-------HHHHHHHHhhhhhhHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            99       899999999999999999999999999999          9999999999999999999999999875

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.82  E-value=2e-18  Score=172.83  Aligned_cols=199  Identities=19%  Similarity=0.199  Sum_probs=177.8

Q ss_pred             hhhhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC----
Q 010976          107 PHQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADN----  172 (496)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~----  172 (496)
                      .+...|++++|+..+.+++...          +..+...|++++|+..|+++++++|++..+++.+|.+|...|+.    
T Consensus        73 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~  152 (368)
T 1fch_A           73 RRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQAC  152 (368)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            3456789999999999998765          34567789999999999999999999999999999999999884    


Q ss_pred             --------CCCCCC-----------------------CcchhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHH
Q 010976          173 --------VSLDST-----------------------SPSKDALLEEACKKYDEATRLCPT--LHDAFYNWAIAISDRAK  219 (496)
Q Consensus       173 --------~~~~~~-----------------------~~~~~~~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~~~~~~~  219 (496)
                              ..+...                       .....|++++|+..|+++++++|+  +..+++++|.++..   
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~---  229 (368)
T 1fch_A          153 EILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL---  229 (368)
T ss_dssp             HHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH---
Confidence                    111111                       112568899999999999999999  89999999999999   


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHH
Q 010976          220 MRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL  299 (496)
Q Consensus       220 ~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~l  299 (496)
                       .|++++|+       ..|++++.++|+++.+++++|.++...|++          ++|+..|+++++++|++..+++++
T Consensus       230 -~g~~~~A~-------~~~~~al~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~l  291 (368)
T 1fch_A          230 -SGEYDKAV-------DCFTAALSVRPNDYLLWNKLGATLANGNQS----------EEAVAAYRRALELQPGYIRSRYNL  291 (368)
T ss_dssp             -TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             -cCCHHHHH-------HHHHHHHHhCcCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCcHHHHHHH
Confidence             99999999       889999999999999999999999999999          999999999999999999999999


Q ss_pred             HHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcH
Q 010976          300 GTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  345 (496)
Q Consensus       300 g~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~  345 (496)
                      |.++..+|+                   +..|..+|++++.+.|+.
T Consensus       292 ~~~~~~~g~-------------------~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          292 GISCINLGA-------------------HREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HHHHHHHTC-------------------HHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCC-------------------HHHHHHHHHHHHHhCCCC
Confidence            999999999                   899999999999998876

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.82  E-value=1.6e-18  Score=164.36  Aligned_cols=190  Identities=18%  Similarity=0.141  Sum_probs=169.6

Q ss_pred             hhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 010976          109 QLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST  178 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~  178 (496)
                      ...++++.|+..+.+++...          +..+...|++++|+..|+++++.+|++..++..+|.+|...|+       
T Consensus        48 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-------  120 (252)
T 2ho1_A           48 LQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKR-------  120 (252)
T ss_dssp             HHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------
T ss_pred             HHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhH-------
Confidence            34566666777777666544          3446678999999999999999999999999999999999999       


Q ss_pred             CcchhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010976          179 SPSKDALLEEACKKYDEATR--LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG  256 (496)
Q Consensus       179 ~~~~~~~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  256 (496)
                             +++|+++|++++.  .+|.+..+++++|.++..    .|++++|+       ..|+++++.+|.+..++..+|
T Consensus       121 -------~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~-------~~~~~~~~~~~~~~~~~~~la  182 (252)
T 2ho1_A          121 -------YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ----MKKPAQAK-------EYFEKSLRLNRNQPSVALEMA  182 (252)
T ss_dssp             -------HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCSCCHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHhcCcccHHHHHHHH
Confidence                   9999999999999  889999999999999999    99999999       788888999999999999999


Q ss_pred             HHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHH
Q 010976          257 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIA  336 (496)
Q Consensus       257 ~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~  336 (496)
                      .++...|++          ++|+..|+++++..|++..++..++.++...|+                   +..|..+++
T Consensus       183 ~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------------------~~~A~~~~~  233 (252)
T 2ho1_A          183 DLLYKEREY----------VPARQYYDLFAQGGGQNARSLLLGIRLAKVFED-------------------RDTAASYGL  233 (252)
T ss_dssp             HHHHHTTCH----------HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTC-------------------HHHHHHHHH
T ss_pred             HHHHHcCCH----------HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccC-------------------HHHHHHHHH
Confidence            999999999          999999999999999999999999999999998                   889999999


Q ss_pred             HHHhcCCcHHHHHHHH
Q 010976          337 AAHALKPSYSVYSSAL  352 (496)
Q Consensus       337 ~a~~l~p~~~~y~~al  352 (496)
                      +++++.|++..+...+
T Consensus       234 ~~~~~~p~~~~~~~~l  249 (252)
T 2ho1_A          234 QLKRLYPGSLEYQEFQ  249 (252)
T ss_dssp             HHHHHCTTSHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHH
Confidence            9999999988765543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.82  E-value=1.1e-19  Score=182.50  Aligned_cols=188  Identities=19%  Similarity=0.161  Sum_probs=165.4

Q ss_pred             CCChhhhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHH----------H
Q 010976          104 GNTPHQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNW----------A  163 (496)
Q Consensus       104 ~~~~~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~l----------g  163 (496)
                      ....+...|+++.|+..+.+++...          +..+..+|++++|+..|+++++++|++..++..+          |
T Consensus       105 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~  184 (365)
T 4eqf_A          105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMS  184 (365)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------------
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHH
Confidence            3444567899999999999998766          3456778999999999999999999887777665          8


Q ss_pred             HHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 010976          164 LVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA  241 (496)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~A  241 (496)
                      .++...|+              +++|+.+|+++++++|+  ++.+++++|.+|..    +|++++|+       ..|+++
T Consensus       185 ~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~----~g~~~~A~-------~~~~~a  239 (365)
T 4eqf_A          185 KSPVDSSV--------------LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL----SGEFNRAI-------DAFNAA  239 (365)
T ss_dssp             ----CCHH--------------HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH----HTCHHHHH-------HHHHHH
T ss_pred             HHHhhhhh--------------HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHH
Confidence            88888888              99999999999999999  99999999999999    99999999       899999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCC
Q 010976          242 VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPRE  321 (496)
Q Consensus       242 l~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~  321 (496)
                      ++++|+++.+++++|.+|...|++          ++|+..|+++++++|+++.+++++|.+|..+|+             
T Consensus       240 l~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-------------  296 (365)
T 4eqf_A          240 LTVRPEDYSLWNRLGATLANGDRS----------EEAVEAYTRALEIQPGFIRSRYNLGISCINLGA-------------  296 (365)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-------------
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC-------------
Confidence            999999999999999999999999          999999999999999999999999999999999             


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCcH
Q 010976          322 VSPNELYSQSAIYIAAAHALKPSY  345 (496)
Q Consensus       322 ~~~~~~~~~A~~~~~~a~~l~p~~  345 (496)
                            +.+|..+|+++++++|+.
T Consensus       297 ------~~~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          297 ------YREAVSNFLTALSLQRKS  314 (365)
T ss_dssp             ------CHHHHHHHHHHHHHHHCC
T ss_pred             ------HHHHHHHHHHHHHhCccc
Confidence                  889999999999998873

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.81  E-value=8.3e-19  Score=168.13  Aligned_cols=197  Identities=13%  Similarity=0.024  Sum_probs=171.2

Q ss_pred             hhhhhhcHHHHHHHHHHhhccc-------------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC
Q 010976          107 PHQLAEQNNAAMELINSVTGVD-------------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNV  173 (496)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~l~~~-------------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~  173 (496)
                      .+...++++.|+..+.+++...             +..+...|++++|+..|+++++++|++..++..+|.+|..+|+  
T Consensus        46 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--  123 (272)
T 3u4t_A           46 CYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN--  123 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC--
T ss_pred             HHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC--
Confidence            4557889999999999888732             3345667999999999999999999999999999999999999  


Q ss_pred             CCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 010976          174 SLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALN  253 (496)
Q Consensus       174 ~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~  253 (496)
                                  +++|+.+|+++++++|++..+++++|.....    .+++++|+       ..|+++++++|++..+++
T Consensus       124 ------------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~~a~~~~p~~~~~~~  180 (272)
T 3u4t_A          124 ------------FPLAIQYMEKQIRPTTTDPKVFYELGQAYYY----NKEYVKAD-------SSFVKVLELKPNIYIGYL  180 (272)
T ss_dssp             ------------HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHH
T ss_pred             ------------HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH----HHHHHHHH-------HHHHHHHHhCccchHHHH
Confidence                        9999999999999999999999999944444    56888877       899999999999999999


Q ss_pred             HHHHHHHHccC---cchHHHhhhhHHHHHHHHHHHHHhc---CC-----CHHHHHHHHHHHHHcchhHHhccCCCCCCCC
Q 010976          254 NWGLALQELSA---IVPAREKQTIVRTAISKFRAAIQLQ---FD-----FHRAIYNLGTVLYGLAEDTLRTGGTVNPREV  322 (496)
Q Consensus       254 ~lg~~l~~~g~---~~~A~~~~~~~~~Ai~~~~~Al~l~---P~-----~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~  322 (496)
                      ++|.++..+|+   +          ++|+..|++++++.   |+     ...++.++|.+|...|+              
T Consensus       181 ~~~~~~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------  236 (272)
T 3u4t_A          181 WRARANAAQDPDTKQ----------GLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD--------------  236 (272)
T ss_dssp             HHHHHHHHHSTTCSS----------CTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC--------------
T ss_pred             HHHHHHHHcCcchhh----------HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC--------------
Confidence            99999999999   8          89999999999986   55     24789999999999999              


Q ss_pred             CcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhhhc
Q 010976          323 SPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRS  357 (496)
Q Consensus       323 ~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~~~~  357 (496)
                           +..|..+|+++++++|+++.....+..+..
T Consensus       237 -----~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  266 (272)
T 3u4t_A          237 -----KVKADAAWKNILALDPTNKKAIDGLKMKLE  266 (272)
T ss_dssp             -----HHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred             -----HHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence                 999999999999999999988777765443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.81  E-value=5e-18  Score=157.04  Aligned_cols=191  Identities=16%  Similarity=0.068  Sum_probs=156.0

Q ss_pred             hhhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-cCCCCCC
Q 010976          108 HQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQES-ADNVSLD  176 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~-~~~~~~~  176 (496)
                      +...|+++.|+..+.+++...          +..+...|++++|+..|++++..+|++..++..+|.++... |+     
T Consensus        18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-----   92 (225)
T 2vq2_A           18 YMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR-----   92 (225)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCC-----
T ss_pred             HHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCc-----
Confidence            345677888888887777654          23455678888888888888888888888888888888888 88     


Q ss_pred             CCCcchhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010976          177 STSPSKDALLEEACKKYDEATR--LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN  254 (496)
Q Consensus       177 ~~~~~~~~~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~  254 (496)
                               +++|+..|+++++  .+|.+..+++++|.++..    .|++++|+       ..|+++++.+|.+..++.+
T Consensus        93 ---------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~  152 (225)
T 2vq2_A           93 ---------PAESMAYFDKALADPTYPTPYIANLNKGICSAK----QGQFGLAE-------AYLKRSLAAQPQFPPAFKE  152 (225)
T ss_dssp             ---------HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHH
T ss_pred             ---------HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCchHHHH
Confidence                     8888888888888  666778888888888888    88888888       7778888888888888888


Q ss_pred             HHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHH
Q 010976          255 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF-DFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAI  333 (496)
Q Consensus       255 lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~  333 (496)
                      +|.++...|++          ++|+..|+++++++| ++..++..++.++...|+                   +..+..
T Consensus       153 la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~a~~  203 (225)
T 2vq2_A          153 LARTKMLAGQL----------GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN-------------------AQAAYE  203 (225)
T ss_dssp             HHHHHHHHTCH----------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-------------------HHHHHH
T ss_pred             HHHHHHHcCCH----------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc-------------------HHHHHH
Confidence            88888888888          888888888888888 888888888888888887                   677788


Q ss_pred             HHHHHHhcCCcHHHHHHHH
Q 010976          334 YIAAAHALKPSYSVYSSAL  352 (496)
Q Consensus       334 ~~~~a~~l~p~~~~y~~al  352 (496)
                      +++.+...+|++..+...+
T Consensus       204 ~~~~~~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          204 YEAQLQANFPYSEELQTVL  222 (225)
T ss_dssp             HHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHh
Confidence            8888888888887665544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.81  E-value=1.7e-18  Score=163.77  Aligned_cols=174  Identities=17%  Similarity=0.138  Sum_probs=161.7

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC-----
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-----  203 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~-----  203 (496)
                      +..+...|++++|+..|+++++.+ .++.+++.+|.++..+|+              +++|+..|+++++++|++     
T Consensus        12 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~   76 (258)
T 3uq3_A           12 GNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGE--------------YETAISTLNDAVEQGREMRADYK   76 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHccc--------------HHHHHHHHHHHHHhCcccccchH
Confidence            344667899999999999999999 999999999999999999              999999999999999887     


Q ss_pred             --HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------HHHHHHhcCCCCHHHHHHHHHHHHHc
Q 010976          204 --HDAFYNWAIAISDRAKMRGRTKEAEELWKQATK-------------------NYEKAVQLNWNSPQALNNWGLALQEL  262 (496)
Q Consensus       204 --~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~-------------------~~~~Al~l~P~~~~a~~~lg~~l~~~  262 (496)
                        ..+++.+|.++..    .|++++|+..|++++.                   .+++++..+|.++.+++++|.++...
T Consensus        77 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (258)
T 3uq3_A           77 VISKSFARIGNAYHK----LGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK  152 (258)
T ss_dssp             HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh
Confidence              7999999999999    9999999988877655                   68888889999999999999999999


Q ss_pred             cCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 010976          263 SAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK  342 (496)
Q Consensus       263 g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~  342 (496)
                      |++          ++|+..|+++++++|+++.+++++|.++...|+                   +..|..+|.++++++
T Consensus       153 ~~~----------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-------------------~~~A~~~~~~al~~~  203 (258)
T 3uq3_A          153 SDW----------PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS-------------------FPEAIADCNKAIEKD  203 (258)
T ss_dssp             TCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHC
T ss_pred             cCH----------HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC-------------------HHHHHHHHHHHHHhC
Confidence            999          999999999999999999999999999999999                   899999999999999


Q ss_pred             CcHHHHHH
Q 010976          343 PSYSVYSS  350 (496)
Q Consensus       343 p~~~~y~~  350 (496)
                      |++.....
T Consensus       204 ~~~~~~~~  211 (258)
T 3uq3_A          204 PNFVRAYI  211 (258)
T ss_dssp             TTCHHHHH
T ss_pred             HHHHHHHH
Confidence            99874433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.80  E-value=4.1e-19  Score=194.78  Aligned_cols=167  Identities=8%  Similarity=-0.021  Sum_probs=157.8

Q ss_pred             HhhccHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH
Q 010976          133 SRQRILTFAAKRYANAI--------ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH  204 (496)
Q Consensus       133 ~~~g~~~~Ai~~~~~al--------~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~  204 (496)
                      ...|++++|+..|++++        +.+|++.++++.+|.+|..+|+              +++|+..|+++++++|++.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~--------------~~~A~~~~~~al~~~p~~~  467 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGD--------------VAKATRKLDDLAERVGWRW  467 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHCCCH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCC--------------HHHHHHHHHHHhccCcchH
Confidence            45799999999999999        9999999999999999999999              9999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHH
Q 010976          205 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA  284 (496)
Q Consensus       205 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~  284 (496)
                      .+|+++|.+|..    +|++++|+       ..|+++++++|+++.+++++|.++..+|++          ++ +..|++
T Consensus       468 ~a~~~lg~~~~~----~g~~~~A~-------~~~~~al~l~P~~~~~~~~lg~~~~~~g~~----------~~-~~~~~~  525 (681)
T 2pzi_A          468 RLVWYRAVAELL----TGDYDSAT-------KHFTEVLDTFPGELAPKLALAATAELAGNT----------DE-HKFYQT  525 (681)
T ss_dssp             HHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHSTTCSHHHHHHHHHHHHHTCC----------CT-TCHHHH
T ss_pred             HHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCChHHHHHHHHHHHHcCCh----------HH-HHHHHH
Confidence            999999999999    99999999       899999999999999999999999999999          99 999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHh
Q 010976          285 AIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL  354 (496)
Q Consensus       285 Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~  354 (496)
                      |++++|++..+++++|.++..+|+                   +.+|..+|+++++++|++......+..
T Consensus       526 al~~~P~~~~a~~~lg~~~~~~g~-------------------~~~A~~~~~~al~l~P~~~~a~~~~~~  576 (681)
T 2pzi_A          526 VWSTNDGVISAAFGLARARSAEGD-------------------RVGAVRTLDEVPPTSRHFTTARLTSAV  576 (681)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHTSCTTSTTHHHHHHHHHH
T ss_pred             HHHhCCchHHHHHHHHHHHHHcCC-------------------HHHHHHHHHhhcccCcccHHHHHHHHH
Confidence            999999999999999999999999                   899999999999999998855544443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.80  E-value=1.5e-17  Score=163.04  Aligned_cols=197  Identities=14%  Similarity=0.120  Sum_probs=174.0

Q ss_pred             hhhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-----
Q 010976          108 HQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADN-----  172 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~-----  172 (496)
                      +...+++++|+..+.+++...          +..+...|++++|+..|+++++++|++..++..+|.++...|+.     
T Consensus        31 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~  110 (327)
T 3cv0_A           31 MLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALA  110 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            345678888888888877654          34456779999999999999999999999999999999888874     


Q ss_pred             -------CCCC----------------------CC-CcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcC
Q 010976          173 -------VSLD----------------------ST-SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG  222 (496)
Q Consensus       173 -------~~~~----------------------~~-~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g  222 (496)
                             ..+.                      .. .....|++++|+..|+++++.+|++..+++.+|.++..    .|
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~  186 (327)
T 3cv0_A          111 SLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL----SN  186 (327)
T ss_dssp             HHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TT
T ss_pred             HHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hc
Confidence                   1111                      11 25667889999999999999999999999999999999    99


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010976          223 RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV  302 (496)
Q Consensus       223 ~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~  302 (496)
                      ++++|+       ..|+++++.+|+++.+++++|.++...|++          ++|+..|+++++++|++..+++++|.+
T Consensus       187 ~~~~A~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~l~~~  249 (327)
T 3cv0_A          187 NYDSAA-------ANLRRAVELRPDDAQLWNKLGATLANGNRP----------QEALDAYNRALDINPGYVRVMYNMAVS  249 (327)
T ss_dssp             CHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            999999       888899999999999999999999999999          999999999999999999999999999


Q ss_pred             HHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976          303 LYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  344 (496)
Q Consensus       303 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~  344 (496)
                      +..+|+                   +..|..+|++++.++|.
T Consensus       250 ~~~~g~-------------------~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          250 YSNMSQ-------------------YDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHTTC-------------------HHHHHHHHHHHHHHHTT
T ss_pred             HHHhcc-------------------HHHHHHHHHHHHHhCCc
Confidence            999999                   89999999999999998

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.80  E-value=2.2e-18  Score=155.90  Aligned_cols=157  Identities=17%  Similarity=0.178  Sum_probs=146.1

Q ss_pred             hhhhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCC
Q 010976          107 PHQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLD  176 (496)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~  176 (496)
                      .+...|++++|+..+.+++..+          +..+..+|++++|+..+.+++..+|++..++..+|.++...++     
T Consensus        14 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   88 (184)
T 3vtx_A           14 KKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDE-----   88 (184)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-----
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCC-----
Confidence            3567899999999999999877          3456778999999999999999999999999999999999999     


Q ss_pred             CCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010976          177 STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG  256 (496)
Q Consensus       177 ~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  256 (496)
                               ++.|+..+.+++.++|++..+++.+|.+|..    +|++++|+       ..|+++++++|+++.+++++|
T Consensus        89 ---------~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~----~g~~~~A~-------~~~~~~l~~~p~~~~~~~~lg  148 (184)
T 3vtx_A           89 ---------KQAAIDALQRAIALNTVYADAYYKLGLVYDS----MGEHDKAI-------EAYEKTISIKPGFIRAYQSIG  148 (184)
T ss_dssp             ---------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHHhCccchHHHHHHHHHHHH----hCCchhHH-------HHHHHHHHhcchhhhHHHHHH
Confidence                     9999999999999999999999999999999    99999999       899999999999999999999


Q ss_pred             HHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010976          257 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG  300 (496)
Q Consensus       257 ~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg  300 (496)
                      .+|..+|++          ++|+.+|++|++++|+++  .++||
T Consensus       149 ~~~~~~g~~----------~~A~~~~~~al~~~p~~a--~~~la  180 (184)
T 3vtx_A          149 LAYEGKGLR----------DEAVKYFKKALEKEEKKA--KYELA  180 (184)
T ss_dssp             HHHHHTTCH----------HHHHHHHHHHHHTTHHHH--HHCSC
T ss_pred             HHHHHCCCH----------HHHHHHHHHHHhCCccCH--HHHHH
Confidence            999999999          999999999999999864  34444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.80  E-value=6.7e-18  Score=167.31  Aligned_cols=187  Identities=17%  Similarity=0.103  Sum_probs=173.6

Q ss_pred             hhhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 010976          108 HQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS  177 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~  177 (496)
                      +...|+++.|+..+.+++...          +..+...|++++|+..|+++++++|++..++..+|.++...|+      
T Consensus        13 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------   86 (359)
T 3ieg_A           13 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGK------   86 (359)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC------
T ss_pred             HHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCC------
Confidence            456789999999999988766          3456778999999999999999999999999999999999999      


Q ss_pred             CCcchhhhHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Q 010976          178 TSPSKDALLEEACKKYDEATRLCP---TLHDAFYNW------------AIAISDRAKMRGRTKEAEELWKQATKNYEKAV  242 (496)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~Al~l~P---~~~~a~~~l------------g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al  242 (496)
                              +++|+..|+++++++|   ++..++..+            |.++..    .|++++|+       ..|++++
T Consensus        87 --------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~A~-------~~~~~~~  147 (359)
T 3ieg_A           87 --------LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD----GADYTAAI-------TFLDKIL  147 (359)
T ss_dssp             --------HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHH
T ss_pred             --------hHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHH----ccCHHHHH-------HHHHHHH
Confidence                    9999999999999999   899998888            577777    99999999       8999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCC
Q 010976          243 QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREV  322 (496)
Q Consensus       243 ~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~  322 (496)
                      +.+|+++.++.++|.++...|++          ++|+..|+++++++|+++.+++++|.++...|+              
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------------  203 (359)
T 3ieg_A          148 EVCVWDAELRELRAECFIKEGEP----------RKAISDLKAASKLKSDNTEAFYKISTLYYQLGD--------------  203 (359)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTC--------------
T ss_pred             HhCCCchHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------
Confidence            99999999999999999999999          999999999999999999999999999999999              


Q ss_pred             CcHHHHHHHHHHHHHHHhcCCcHHHH
Q 010976          323 SPNELYSQSAIYIAAAHALKPSYSVY  348 (496)
Q Consensus       323 ~~~~~~~~A~~~~~~a~~l~p~~~~y  348 (496)
                           +..|..+|+++++++|++...
T Consensus       204 -----~~~A~~~~~~a~~~~~~~~~~  224 (359)
T 3ieg_A          204 -----HELSLSEVRECLKLDQDHKRC  224 (359)
T ss_dssp             -----HHHHHHHHHHHHHHCTTCHHH
T ss_pred             -----HHHHHHHHHHHHhhCccchHH
Confidence                 899999999999999998753

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.80  E-value=5.3e-18  Score=178.59  Aligned_cols=202  Identities=15%  Similarity=0.119  Sum_probs=181.7

Q ss_pred             hhhhhhcHHHHHHHHHHhhccc---------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 010976          107 PHQLAEQNNAAMELINSVTGVD---------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS  177 (496)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~l~~~---------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~  177 (496)
                      .+...++++.|+..+.+++...         +..+...|++++|+..|+++++.+|+++.++..+|.++...|+      
T Consensus       252 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------  325 (537)
T 3fp2_A          252 FHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD------  325 (537)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------
T ss_pred             HHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC------
Confidence            3446788899999999988765         3345567999999999999999999999999999999999999      


Q ss_pred             CCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976          178 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL  257 (496)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  257 (496)
                              +++|+..|+++++++|++..+++++|.++..    .|++++|+       ..|+++++.+|+++.+++++|.
T Consensus       326 --------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~-------~~~~~~~~~~~~~~~~~~~l~~  386 (537)
T 3fp2_A          326 --------YKNAKEDFQKAQSLNPENVYPYIQLACLLYK----QGKFTESE-------AFFNETKLKFPTLPEVPTFFAE  386 (537)
T ss_dssp             --------HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCTHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCChHHHHHHHH
Confidence                    9999999999999999999999999999999    99999999       8899999999999999999999


Q ss_pred             HHHHccCcchHHH------------------------------hh----------hhHHHHHHHHHHHHHhcCCCHHHHH
Q 010976          258 ALQELSAIVPARE------------------------------KQ----------TIVRTAISKFRAAIQLQFDFHRAIY  297 (496)
Q Consensus       258 ~l~~~g~~~~A~~------------------------------~~----------~~~~~Ai~~~~~Al~l~P~~~~a~~  297 (496)
                      ++...|++++|..                              ..          |++++|+..|+++++++|++..+++
T Consensus       387 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  466 (537)
T 3fp2_A          387 ILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKI  466 (537)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHH
Confidence            9999999988821                              22          9999999999999999999999999


Q ss_pred             HHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Q 010976          298 NLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL  352 (496)
Q Consensus       298 ~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al  352 (496)
                      ++|.+|..+|+                   +..|..+|+++++++|........+
T Consensus       467 ~l~~~~~~~g~-------------------~~~A~~~~~~al~~~~~~~~~~~~~  502 (537)
T 3fp2_A          467 GLAQLKLQMEK-------------------IDEAIELFEDSAILARTMDEKLQAT  502 (537)
T ss_dssp             HHHHHHHHTTC-------------------HHHHHHHHHHHHHHC--CHHHHHHH
T ss_pred             HHHHHHHHhcc-------------------HHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            99999999999                   8999999999999999988554433

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.80  E-value=7.7e-18  Score=155.79  Aligned_cols=167  Identities=15%  Similarity=0.089  Sum_probs=156.0

Q ss_pred             hhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010976          130 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN  209 (496)
Q Consensus       130 ~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~  209 (496)
                      ..+...|++++|+..|+++++.+|++..+++.+|.++...|+              +++|+..|++++.++|++..++++
T Consensus        16 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~   81 (225)
T 2vq2_A           16 MEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKV--------------NDKAQESFRQALSIKPDSAEINNN   81 (225)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHHhCCCChHHHHH
Confidence            346678999999999999999999999999999999999999              999999999999999999999999


Q ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHH
Q 010976          210 WAIAISDRAKMR-GRTKEAEELWKQATKNYEKAVQ--LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI  286 (496)
Q Consensus       210 lg~~~~~~~~~~-g~~~eA~~~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al  286 (496)
                      +|.++..    . |++++|+       ..|+++++  .+|.+..+++++|.++...|++          ++|+..|++++
T Consensus        82 l~~~~~~----~~~~~~~A~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~  140 (225)
T 2vq2_A           82 YGWFLCG----RLNRPAESM-------AYFDKALADPTYPTPYIANLNKGICSAKQGQF----------GLAEAYLKRSL  140 (225)
T ss_dssp             HHHHHHT----TTCCHHHHH-------HHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHH
T ss_pred             HHHHHHH----hcCcHHHHH-------HHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH----------HHHHHHHHHHH
Confidence            9999999    9 9999999       77888887  6777899999999999999999          99999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCC-cHHHHHH
Q 010976          287 QLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP-SYSVYSS  350 (496)
Q Consensus       287 ~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p-~~~~y~~  350 (496)
                      +.+|++..+++++|.++...|+                   +..|..+|++++.++| .+.....
T Consensus       141 ~~~~~~~~~~~~la~~~~~~~~-------------------~~~A~~~~~~~~~~~~~~~~~~~~  186 (225)
T 2vq2_A          141 AAQPQFPPAFKELARTKMLAGQ-------------------LGDADYYFKKYQSRVEVLQADDLL  186 (225)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHTC-------------------HHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred             HhCCCCchHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCCCCCHHHHH
Confidence            9999999999999999999999                   8999999999999999 7664433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.80  E-value=2.8e-18  Score=153.47  Aligned_cols=162  Identities=12%  Similarity=0.079  Sum_probs=154.2

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010976          131 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  210 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~l  210 (496)
                      .+...|++++|+..|+++++.+|.+..+++.+|.++...|+              +++|+..|+++++++|++..+++++
T Consensus        17 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~   82 (186)
T 3as5_A           17 SHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGA--------------VDRGTELLERSLADAPDNVKVATVL   82 (186)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            45667999999999999999999999999999999999999              9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcC
Q 010976          211 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF  290 (496)
Q Consensus       211 g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P  290 (496)
                      |.++..    .|++++|+       ..|++++..+|.+..+++++|.++...|++          ++|+..|+++++..|
T Consensus        83 a~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~  141 (186)
T 3as5_A           83 GLTYVQ----VQKYDLAV-------PLLIKVAEANPINFNVRFRLGVALDNLGRF----------DEAIDSFKIALGLRP  141 (186)
T ss_dssp             HHHHHH----HTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCT
T ss_pred             HHHHHH----hcCHHHHH-------HHHHHHHhcCcHhHHHHHHHHHHHHHcCcH----------HHHHHHHHHHHhcCc
Confidence            999999    99999999       888999999999999999999999999999          999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          291 DFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       291 ~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                      ++..+++++|.++...|+                   +..|..+++++++++|++.
T Consensus       142 ~~~~~~~~la~~~~~~~~-------------------~~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          142 NEGKVHRAIAFSYEQMGR-------------------HEEALPHFKKANELDEGAS  178 (186)
T ss_dssp             TCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHHCCC
T ss_pred             cchHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHcCCCch
Confidence            999999999999999998                   8899999999988877654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.79  E-value=8.4e-19  Score=184.11  Aligned_cols=172  Identities=14%  Similarity=0.097  Sum_probs=155.4

Q ss_pred             CChhhhhhcH-HHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----
Q 010976          105 NTPHQLAEQN-NAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQES----  169 (496)
Q Consensus       105 ~~~~~~~~~~-~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~----  169 (496)
                      +..+...+++ ++|+..+.+++...          +..+..+|++++|+.+|+++++++|+ ..++.++|.+|..+    
T Consensus       109 g~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~  187 (474)
T 4abn_A          109 GKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDS  187 (474)
T ss_dssp             HHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSC
T ss_pred             HHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCC
Confidence            3344567889 99999999998876          44567789999999999999999999 79999999999998    


Q ss_pred             -----cCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHH
Q 010976          170 -----ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR----GRTKEAEELWKQATKNYEK  240 (496)
Q Consensus       170 -----~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~----g~~~eA~~~~~~A~~~~~~  240 (496)
                           |+              +++|+..|+++++++|++..+|+++|.+|...++..    |++++|+       ..|++
T Consensus       188 ~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~-------~~~~~  246 (474)
T 4abn_A          188 GDEHSRH--------------VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL-------SAYAQ  246 (474)
T ss_dssp             HHHHHHH--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH-------HHHHH
T ss_pred             hhhhhhh--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH-------HHHHH
Confidence                 77              999999999999999999999999999999821112    6666666       89999


Q ss_pred             HHhcCC---CCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          241 AVQLNW---NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       241 Al~l~P---~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                      +++++|   +++.+++++|.+|..+|++          ++|+..|+++++++|++..++.+++.++..+|+
T Consensus       247 al~~~p~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~  307 (474)
T 4abn_A          247 AEKVDRKASSNPDLHLNRATLHKYEESY----------GEALEGFSQAAALDPAWPEPQQREQQLLEFLSR  307 (474)
T ss_dssp             HHHHCGGGGGCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCcccCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            999999   9999999999999999999          999999999999999999999999999999998

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.79  E-value=4.4e-18  Score=159.57  Aligned_cols=172  Identities=16%  Similarity=0.114  Sum_probs=154.2

Q ss_pred             hhhhhcHHHHHHHHHHhhccc-----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCC
Q 010976          108 HQLAEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLD  176 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~-----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~  176 (496)
                      +...+++++|+..+.+++...           +.++...|++++|+..|+++++.+|++..+++.+|.+|..+|+     
T Consensus        17 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-----   91 (228)
T 4i17_A           17 ALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKN-----   91 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTC-----
T ss_pred             HHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHccc-----
Confidence            456789999999999888765           3456678999999999999999999999999999999999999     


Q ss_pred             CCCcchhhhHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC--
Q 010976          177 STSPSKDALLEEACKKYDEATRLCPTLH-------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--  247 (496)
Q Consensus       177 ~~~~~~~~~~~~A~~~~~~Al~l~P~~~-------~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~--  247 (496)
                               +++|+..|+++++++|++.       .+|+++|.++..    +|++++|+       ..|+++++++|+  
T Consensus        92 ---------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~-------~~~~~al~~~p~~~  151 (228)
T 4i17_A           92 ---------NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ----AGNIEKAE-------ENYKHATDVTSKKW  151 (228)
T ss_dssp             ---------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHTTSSCHHH
T ss_pred             ---------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH----hccHHHHH-------HHHHHHHhcCCCcc
Confidence                     9999999999999999999       669999999999    99999999       899999999999  


Q ss_pred             CHHHHHHHHHHHHHccCc--chH---------------HHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010976          248 SPQALNNWGLALQELSAI--VPA---------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY  304 (496)
Q Consensus       248 ~~~a~~~lg~~l~~~g~~--~~A---------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~  304 (496)
                      ++.+++++|.+|..+|+.  +.+               ....+.+++|+.+|+++++++|++..+...++.+..
T Consensus       152 ~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          152 KTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA  225 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            999999999999999886  221               234677899999999999999999999998887754

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.79  E-value=1.1e-17  Score=172.25  Aligned_cols=194  Identities=14%  Similarity=0.106  Sum_probs=176.8

Q ss_pred             hhhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 010976          108 HQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS  177 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~  177 (496)
                      +...++++.|+..+.+++...          +..+...|++++|+..|+++++.+|+++.+++.+|.+|...|+      
T Consensus       153 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------  226 (450)
T 2y4t_A          153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD------  226 (450)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------
Confidence            456789999999999988755          3456778999999999999999999999999999999999999      


Q ss_pred             CCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC
Q 010976          178 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNW------------AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN  245 (496)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~l------------g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~  245 (496)
                              +++|+..|++++.++|++...+..+            |.++..    .|++++|+       ..|+++++++
T Consensus       227 --------~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~-------~~~~~~l~~~  287 (450)
T 2y4t_A          227 --------HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR----DGRYTDAT-------SKYESVMKTE  287 (450)
T ss_dssp             --------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHC
T ss_pred             --------HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHhcC
Confidence                    9999999999999999999988777            888988    99999999       8889999999


Q ss_pred             CCCH----HHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCC
Q 010976          246 WNSP----QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPRE  321 (496)
Q Consensus       246 P~~~----~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~  321 (496)
                      |+++    .++.++|.++...|++          ++|+..|+++++++|++..+++++|.++...|+             
T Consensus       288 p~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~-------------  344 (450)
T 2y4t_A          288 PSIAEYTVRSKERICHCFSKDEKP----------VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM-------------  344 (450)
T ss_dssp             CSSHHHHHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------
T ss_pred             CcchHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC-------------
Confidence            9985    4889999999999999          999999999999999999999999999999999             


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Q 010976          322 VSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV  355 (496)
Q Consensus       322 ~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~~  355 (496)
                            +..|..+|+++++++|++......+..+
T Consensus       345 ------~~~A~~~~~~al~~~p~~~~~~~~l~~~  372 (450)
T 2y4t_A          345 ------YDEAIQDYETAQEHNENDQQIREGLEKA  372 (450)
T ss_dssp             ------HHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence                  9999999999999999998666665543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.79  E-value=1.1e-17  Score=178.81  Aligned_cols=192  Identities=12%  Similarity=0.059  Sum_probs=152.7

Q ss_pred             hhhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 010976          108 HQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS  177 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~  177 (496)
                      +...|++++|+..+.+++...          +.++.+.|++++|+..|+++++..|++..+++.+|.+|...|+      
T Consensus       383 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------  456 (597)
T 2xpi_A          383 YLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN------  456 (597)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC------
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC------
Confidence            345566677777666665433          2334556777777777777777777777777777777777777      


Q ss_pred             CCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc------CCCC-HH
Q 010976          178 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL------NWNS-PQ  250 (496)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l------~P~~-~~  250 (496)
                              +++|++.|+++++++|++..+|+.+|.+|..    .|++++|+       ..|++++++      +|++ ..
T Consensus       457 --------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~-------~~~~~~~~~~~~~~~~p~~~~~  517 (597)
T 2xpi_A          457 --------ILLANEYLQSSYALFQYDPLLLNELGVVAFN----KSDMQTAI-------NHFQNALLLVKKTQSNEKPWAA  517 (597)
T ss_dssp             --------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHHHHSCCCSGGGHH
T ss_pred             --------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHHHHH-------HHHHHHHHhhhccccchhhHHH
Confidence                    8888888888888888777788888888877    78887777       566666655      6765 89


Q ss_pred             HHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHH
Q 010976          251 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQ  330 (496)
Q Consensus       251 a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  330 (496)
                      +++++|.+|...|++          ++|+..|+++++++|+++.+++.+|.+|...|+                   +.+
T Consensus       518 ~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-------------------~~~  568 (597)
T 2xpi_A          518 TWANLGHAYRKLKMY----------DAAIDALNQGLLLSTNDANVHTAIALVYLHKKI-------------------PGL  568 (597)
T ss_dssp             HHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC-------------------HHH
T ss_pred             HHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-------------------HHH
Confidence            999999999999999          999999999999999999999999999999999                   899


Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHH
Q 010976          331 SAIYIAAAHALKPSYSVYSSALR  353 (496)
Q Consensus       331 A~~~~~~a~~l~p~~~~y~~al~  353 (496)
                      |..+|+++++++|++......+.
T Consensus       569 A~~~~~~~l~~~p~~~~~~~~l~  591 (597)
T 2xpi_A          569 AITHLHESLAISPNEIMASDLLK  591 (597)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCChHHHHHHH
Confidence            99999999999999986655554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.79  E-value=1.1e-18  Score=191.48  Aligned_cols=163  Identities=14%  Similarity=0.043  Sum_probs=150.4

Q ss_pred             hhhcHHHHHHHHHHhh--------ccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 010976          110 LAEQNNAAMELINSVT--------GVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESAD  171 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~l--------~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~  171 (496)
                      ..+++++|+..+.+++        ...          +..+..+|++++|+..|+++++++|++..+|+++|.+|..+|+
T Consensus       403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~  482 (681)
T 2pzi_A          403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGD  482 (681)
T ss_dssp             TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTC
T ss_pred             cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCC
Confidence            4688999999999998        333          3456678999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 010976          172 NVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA  251 (496)
Q Consensus       172 ~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a  251 (496)
                                    +++|++.|+++++++|++..+++++|.+|..    +|++++ +       ..|+++++++|++..+
T Consensus       483 --------------~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~----~g~~~~-~-------~~~~~al~~~P~~~~a  536 (681)
T 2pzi_A          483 --------------YDSATKHFTEVLDTFPGELAPKLALAATAEL----AGNTDE-H-------KFYQTVWSTNDGVISA  536 (681)
T ss_dssp             --------------HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----HTCCCT-T-------CHHHHHHHHCTTCHHH
T ss_pred             --------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCChHH-H-------HHHHHHHHhCCchHHH
Confidence                          9999999999999999999999999999999    999999 9       8999999999999999


Q ss_pred             HHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          252 LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       252 ~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                      ++++|.+|..+|++          ++|+..|++|++++|++..+++++|.++...++
T Consensus       537 ~~~lg~~~~~~g~~----------~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          537 AFGLARARSAEGDR----------VGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHHHHHHHTTCH----------HHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHcCCH----------HHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            99999999999999          999999999999999999999999999977553

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.78  E-value=5.5e-18  Score=159.16  Aligned_cols=165  Identities=24%  Similarity=0.237  Sum_probs=149.2

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010976          131 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  210 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~l  210 (496)
                      .+...|++++|+..|+++++.+|++..+++.+|.++...|+              +++|+..|+++++++|++..+++.+
T Consensus        32 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~l   97 (243)
T 2q7f_A           32 RGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNE--------------LERALAFYDKALELDSSAATAYYGA   97 (243)
T ss_dssp             ----------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCcchHHHHHH
Confidence            35567999999999999999999999999999999999999              9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcC
Q 010976          211 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF  290 (496)
Q Consensus       211 g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P  290 (496)
                      |.++..    .|++++|+       ..|+++++.+|.+..+++++|.++...|++          ++|+..|+++++++|
T Consensus        98 a~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~  156 (243)
T 2q7f_A           98 GNVYVV----KEMYKEAK-------DMFEKALRAGMENGDLFYMLGTVLVKLEQP----------KLALPYLQRAVELNE  156 (243)
T ss_dssp             HHHHHH----TTCHHHHH-------HHHHHHHHHTCCSHHHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHCT
T ss_pred             HHHHHH----hccHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHhCC
Confidence            999999    99999999       889999999999999999999999999999          999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHH
Q 010976          291 DFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS  349 (496)
Q Consensus       291 ~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~  349 (496)
                      ++..+++++|.++...|+                   +..|..+|.+++..+|.+....
T Consensus       157 ~~~~~~~~l~~~~~~~~~-------------------~~~A~~~~~~~~~~~~~~~~~~  196 (243)
T 2q7f_A          157 NDTEARFQFGMCLANEGM-------------------LDEALSQFAAVTEQDPGHADAF  196 (243)
T ss_dssp             TCHHHHHHHHHHHHHHTC-------------------CHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ccHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCcccHHHH
Confidence            999999999999999998                   8899999999999999877443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.78  E-value=1.4e-17  Score=157.79  Aligned_cols=166  Identities=19%  Similarity=0.158  Sum_probs=156.8

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010976          131 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  210 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~l  210 (496)
                      .+...|++++|+..|+++++.+|++..+++.+|.++...|+              +++|++.|+++++++|++..+++++
T Consensus        46 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~l  111 (252)
T 2ho1_A           46 GYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEME--------------PKLADEEYRKALASDSRNARVLNNY  111 (252)
T ss_dssp             HHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCcCcHHHHHHH
Confidence            35567999999999999999999999999999999999999              9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh
Q 010976          211 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ--LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  288 (496)
Q Consensus       211 g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l  288 (496)
                      |.++..    .|++++|+       ..|++++.  .+|.+..+++++|.++...|++          ++|+..|++++++
T Consensus       112 a~~~~~----~g~~~~A~-------~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~  170 (252)
T 2ho1_A          112 GGFLYE----QKRYEEAY-------QRLLEASQDTLYPERSRVFENLGLVSLQMKKP----------AQAKEYFEKSLRL  170 (252)
T ss_dssp             HHHHHH----TTCHHHHH-------HHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHH
T ss_pred             HHHHHH----HhHHHHHH-------HHHHHHHhCccCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhc
Confidence            999999    99999999       78888888  8899999999999999999999          9999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHH
Q 010976          289 QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS  350 (496)
Q Consensus       289 ~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~  350 (496)
                      +|++..+++.+|.++...|+                   +..|..+|++++...|.+.....
T Consensus       171 ~~~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~~~~~~~~~~~~~~  213 (252)
T 2ho1_A          171 NRNQPSVALEMADLLYKERE-------------------YVPARQYYDLFAQGGGQNARSLL  213 (252)
T ss_dssp             CSCCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHTTSCCCHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCcCcHHHHH
Confidence            99999999999999999999                   89999999999999998774433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.78  E-value=1.8e-17  Score=170.70  Aligned_cols=188  Identities=17%  Similarity=0.109  Sum_probs=171.5

Q ss_pred             hhhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 010976          108 HQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS  177 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~  177 (496)
                      +...|+++.|+..+.+++...          +.++...|++++|+..|+++++.+|++..+++.+|.+|..+|+      
T Consensus        36 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~------  109 (450)
T 2y4t_A           36 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK------  109 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC------
Confidence            456789999999999988754          3456778999999999999999999999999999999999999      


Q ss_pred             CCcchhhhHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Q 010976          178 TSPSKDALLEEACKKYDEATRLCPTLH---DAFYNW------------AIAISDRAKMRGRTKEAEELWKQATKNYEKAV  242 (496)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~Al~l~P~~~---~a~~~l------------g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al  242 (496)
                              +++|+..|+++++++|++.   .++..+            |.++..    .|++++|+       ..|++++
T Consensus       110 --------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~A~-------~~~~~~~  170 (450)
T 2y4t_A          110 --------LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG----SGDYTAAI-------AFLDKIL  170 (450)
T ss_dssp             --------HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHH-------HHHHHHH
T ss_pred             --------HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHH
Confidence                    9999999999999999998   777666            555777    88888888       8899999


Q ss_pred             hcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCC
Q 010976          243 QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREV  322 (496)
Q Consensus       243 ~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~  322 (496)
                      +.+|.+..+++++|.+|...|++          ++|+..|+++++++|+++.+++++|.+|...|+              
T Consensus       171 ~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------  226 (450)
T 2y4t_A          171 EVCVWDAELRELRAECFIKEGEP----------RKAISDLKAASKLKNDNTEAFYKISTLYYQLGD--------------  226 (450)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCG----------GGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC--------------
T ss_pred             HhCCCChHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------
Confidence            99999999999999999999999          999999999999999999999999999999999              


Q ss_pred             CcHHHHHHHHHHHHHHHhcCCcHHHHH
Q 010976          323 SPNELYSQSAIYIAAAHALKPSYSVYS  349 (496)
Q Consensus       323 ~~~~~~~~A~~~~~~a~~l~p~~~~y~  349 (496)
                           +..|..+|++++.++|++....
T Consensus       227 -----~~~A~~~~~~~~~~~p~~~~~~  248 (450)
T 2y4t_A          227 -----HELSLSEVRECLKLDQDHKRCF  248 (450)
T ss_dssp             -----HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             -----HHHHHHHHHHHHHhCCChHHHH
Confidence                 8899999999999999887543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.78  E-value=2.3e-19  Score=158.23  Aligned_cols=136  Identities=15%  Similarity=0.101  Sum_probs=121.6

Q ss_pred             HHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 010976          162 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA  241 (496)
Q Consensus       162 lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~A  241 (496)
                      ||.++...|+              +++|+..|++++..+|+++.+++++|.+|..    +|++++|+       ..|+++
T Consensus         3 LG~~~~~~~~--------------~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~----~~~~~~A~-------~~~~~a   57 (150)
T 4ga2_A            3 LGSMRRSKAD--------------VERYIASVQGSTPSPRQKSIKGFYFAKLYYE----AKEYDLAK-------KYICTY   57 (150)
T ss_dssp             ----CCCHHH--------------HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH----TTCHHHHH-------HHHHHH
T ss_pred             hHHHHHHcCh--------------HHHHHHHHHHhcccCcccHHHHHHHHHHHHH----cCCHHHHH-------HHHHHH
Confidence            5666666666              9999999999999999999999999999999    99999999       899999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCC
Q 010976          242 VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPRE  321 (496)
Q Consensus       242 l~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~  321 (496)
                      ++++|+++.+|+++|.+|..+|++          ++|+.+|+++++++|+++.+++++|.+|..+|+             
T Consensus        58 l~~~p~~~~a~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-------------  114 (150)
T 4ga2_A           58 INVQERDPKAHRFLGLLYELEENT----------DKAVECYRRSVELNPTQKDLVLKIAELLCKNDV-------------  114 (150)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS-------------
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCch----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------------
Confidence            999999999999999999999999          999999999999999999999999999999998             


Q ss_pred             CCcHHHHHHHHHH-HHHHHhcCCcHHHHHHH
Q 010976          322 VSPNELYSQSAIY-IAAAHALKPSYSVYSSA  351 (496)
Q Consensus       322 ~~~~~~~~~A~~~-~~~a~~l~p~~~~y~~a  351 (496)
                            +.+++.+ ++++++++|+++.....
T Consensus       115 ------~~~aa~~~~~~al~l~P~~~~~~~l  139 (150)
T 4ga2_A          115 ------TDGRAKYWVERAAKLFPGSPAVYKL  139 (150)
T ss_dssp             ------SSSHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             ------hHHHHHHHHHHHHHhCcCCHHHHHH
Confidence                  5555554 68999999999855443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.78  E-value=5.5e-17  Score=158.94  Aligned_cols=173  Identities=17%  Similarity=0.123  Sum_probs=160.8

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010976          131 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  210 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~l  210 (496)
                      .+...|++++|+..|+++++.+|++..++..+|.++...|+              +++|+..|+++++++|++..+++.+
T Consensus        30 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~l   95 (327)
T 3cv0_A           30 SMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEK--------------DGLAIIALNHARMLDPKDIAVHAAL   95 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCcCCHHHHHHH
Confidence            35567999999999999999999999999999999999999              9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHH------------------------------------------HHHHHHHHHhcCCCC
Q 010976          211 AIAISDRAKMRGRTKEAEELWKQ------------------------------------------ATKNYEKAVQLNWNS  248 (496)
Q Consensus       211 g~~~~~~~~~~g~~~eA~~~~~~------------------------------------------A~~~~~~Al~l~P~~  248 (496)
                      |.++..    .|++++|++.|++                                          |+..|+++++.+|.+
T Consensus        96 a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~  171 (327)
T 3cv0_A           96 AVSHTN----EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND  171 (327)
T ss_dssp             HHHHHH----TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHH----cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence            999999    9999999876644                                          556689999999999


Q ss_pred             HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHH
Q 010976          249 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELY  328 (496)
Q Consensus       249 ~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~  328 (496)
                      ..+++.+|.++...|++          ++|+..|+++++++|++..+++++|.++...|+                   +
T Consensus       172 ~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------------~  222 (327)
T 3cv0_A          172 AQLHASLGVLYNLSNNY----------DSAAANLRRAVELRPDDAQLWNKLGATLANGNR-------------------P  222 (327)
T ss_dssp             HHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------H
T ss_pred             HHHHHHHHHHHHHhccH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-------------------H
Confidence            99999999999999999          999999999999999999999999999999998                   8


Q ss_pred             HHHHHHHHHHHhcCCcHHHHHH
Q 010976          329 SQSAIYIAAAHALKPSYSVYSS  350 (496)
Q Consensus       329 ~~A~~~~~~a~~l~p~~~~y~~  350 (496)
                      .+|..+|+++++++|.+.....
T Consensus       223 ~~A~~~~~~a~~~~~~~~~~~~  244 (327)
T 3cv0_A          223 QEALDAYNRALDINPGYVRVMY  244 (327)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHH
Confidence            9999999999999998774333

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.78  E-value=1.7e-17  Score=162.89  Aligned_cols=184  Identities=10%  Similarity=0.012  Sum_probs=150.3

Q ss_pred             hhhcHHHHHHHHHHhhccc------------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 010976          110 LAEQNNAAMELINSVTGVD------------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS  177 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~l~~~------------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~  177 (496)
                      ..++.+.|+..+.+++...            +..+...|++++|+..|++     |++.+++..+|.+|..+|+      
T Consensus        77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~------  145 (291)
T 3mkr_A           77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDR------  145 (291)
T ss_dssp             CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTC------
T ss_pred             CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCC------
Confidence            4566788888887766431            3445667889999988887     8888899999999999888      


Q ss_pred             CCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976          178 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL  257 (496)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  257 (496)
                              +++|++.|+++++++|++...  +++.++...+...|++++|+       ..|+++++.+|+++.+++++|.
T Consensus       146 --------~~~A~~~l~~~~~~~p~~~~~--~l~~a~~~l~~~~~~~~eA~-------~~~~~~l~~~p~~~~~~~~la~  208 (291)
T 3mkr_A          146 --------LDLARKELKKMQDQDEDATLT--QLATAWVSLAAGGEKLQDAY-------YIFQEMADKCSPTLLLLNGQAA  208 (291)
T ss_dssp             --------HHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHCTTHHHHHH-------HHHHHHHHHSCCCHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHhhCcCcHHH--HHHHHHHHHHhCchHHHHHH-------HHHHHHHHhCCCcHHHHHHHHH
Confidence                    999999999999999887643  33333322111157788887       8999999999999999999999


Q ss_pred             HHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHH-HHHHHH
Q 010976          258 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQ-SAIYIA  336 (496)
Q Consensus       258 ~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-A~~~~~  336 (496)
                      ++..+|++          ++|+..|+++++++|+++.+++|+|.++..+|+                   +.+ +..+++
T Consensus       209 ~~~~~g~~----------~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~-------------------~~eaa~~~~~  259 (291)
T 3mkr_A          209 CHMAQGRW----------EAAEGVLQEALDKDSGHPETLINLVVLSQHLGK-------------------PPEVTNRYLS  259 (291)
T ss_dssp             HHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------CHHHHHHHHH
T ss_pred             HHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------------------CHHHHHHHHH
Confidence            99999999          999999999999999999999999999999998                   444 568999


Q ss_pred             HHHhcCCcHHHHHH
Q 010976          337 AAHALKPSYSVYSS  350 (496)
Q Consensus       337 ~a~~l~p~~~~y~~  350 (496)
                      ++++++|+++....
T Consensus       260 ~~~~~~P~~~~~~d  273 (291)
T 3mkr_A          260 QLKDAHRSHPFIKE  273 (291)
T ss_dssp             HHHHHCTTCHHHHH
T ss_pred             HHHHhCCCChHHHH
Confidence            99999999995443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.77  E-value=7e-17  Score=154.51  Aligned_cols=193  Identities=17%  Similarity=0.168  Sum_probs=159.6

Q ss_pred             hhhhcHHHHHHHHHHhhccc--------------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCC
Q 010976          109 QLAEQNNAAMELINSVTGVD--------------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS  174 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~l~~~--------------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~  174 (496)
                      ...+++++|+..+.+++...              +..+...|++++|+..|+++++++|+++.++..+|.++...|+   
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~---   92 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN---   92 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC---
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC---
Confidence            34578888999888888751              3456678999999999999999999999999999999999999   


Q ss_pred             CCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010976          175 LDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN  254 (496)
Q Consensus       175 ~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~  254 (496)
                                 +++|+.+|+++++++|++..+++++|.+|..    .|++++|+       ..|+++++++|++...+..
T Consensus        93 -----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~-------~~~~~a~~~~~~~~~~~~~  150 (275)
T 1xnf_A           93 -----------FDAAYEAFDSVLELDPTYNYAHLNRGIALYY----GGRDKLAQ-------DDLLAFYQDDPNDPFRSLW  150 (275)
T ss_dssp             -----------HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHH
T ss_pred             -----------HHHHHHHHHHHHhcCccccHHHHHHHHHHHH----hccHHHHH-------HHHHHHHHhCCCChHHHHH
Confidence                       9999999999999999999999999999999    99999999       7888888899999877766


Q ss_pred             HHHHHHHccCcchHHH-----------------------hhhhHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcc
Q 010976          255 WGLALQELSAIVPARE-----------------------KQTIVRTAISKFRAAIQLQFD----FHRAIYNLGTVLYGLA  307 (496)
Q Consensus       255 lg~~l~~~g~~~~A~~-----------------------~~~~~~~Ai~~~~~Al~l~P~----~~~a~~~lg~~~~~~g  307 (496)
                      ++.+ ...|++++|..                       ..++.++|+..+++++...|.    +..+++++|.++..+|
T Consensus       151 ~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  229 (275)
T 1xnf_A          151 LYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLG  229 (275)
T ss_dssp             HHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcC
Confidence            6654 55688854411                       223345666666666655553    3678888888888888


Q ss_pred             hhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          308 EDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       308 ~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                      +                   +.+|..+|++++.++|.+.
T Consensus       230 ~-------------------~~~A~~~~~~al~~~p~~~  249 (275)
T 1xnf_A          230 D-------------------LDSATALFKLAVANNVHNF  249 (275)
T ss_dssp             C-------------------HHHHHHHHHHHHTTCCTTC
T ss_pred             C-------------------HHHHHHHHHHHHhCCchhH
Confidence            8                   8899999999999999654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.77  E-value=1.1e-17  Score=160.54  Aligned_cols=187  Identities=13%  Similarity=0.079  Sum_probs=154.3

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC---H
Q 010976          131 GRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---H  204 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~---~  204 (496)
                      .++..|++++|+..|+++++.+|++   +.+++.+|.+|+.+|+              +++|+..|+++++++|++   .
T Consensus        24 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~--------------~~~A~~~~~~~l~~~p~~~~~~   89 (261)
T 3qky_A           24 EFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKE--------------YLLAASEYERFIQIYQIDPRVP   89 (261)
T ss_dssp             HHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCTTHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCc--------------HHHHHHHHHHHHHHCCCCchhH
Confidence            3556899999999999999999999   9999999999999999              999999999999998854   6


Q ss_pred             HHHHHHHHHHHHH----HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHcc
Q 010976          205 DAFYNWAIAISDR----AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL-----------------NNWGLALQELS  263 (496)
Q Consensus       205 ~a~~~lg~~~~~~----~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~-----------------~~lg~~l~~~g  263 (496)
                      .+++++|.++...    ...+|++++|+       ..|++++..+|++..+.                 +++|.+|..+|
T Consensus        90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~-------~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g  162 (261)
T 3qky_A           90 QAEYERAMCYYKLSPPYELDQTDTRKAI-------EAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRE  162 (261)
T ss_dssp             HHHHHHHHHHHHHCCCTTSCCHHHHHHH-------HHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcccccccchhHHHHH-------HHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            7899999998640    00035566666       89999999999987666                 88999999999


Q ss_pred             CcchHHHhhhhHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHh
Q 010976          264 AIVPAREKQTIVRTAISKFRAAIQLQFD---FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHA  340 (496)
Q Consensus       264 ~~~~A~~~~~~~~~Ai~~~~~Al~l~P~---~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~  340 (496)
                      ++          ++|+..|+++++..|+   ...+++++|.+|..+|......         .....+.+|..+|+++++
T Consensus       163 ~~----------~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~---------~~~~~~~~A~~~~~~~~~  223 (261)
T 3qky_A          163 LY----------EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRA---------RQPERYRRAVELYERLLQ  223 (261)
T ss_dssp             CH----------HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGG---------GHHHHHHHHHHHHHHHHH
T ss_pred             CH----------HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhh---------cccchHHHHHHHHHHHHH
Confidence            99          9999999999999998   5679999999999885411000         011238999999999999


Q ss_pred             cCCcHHHHHHHHHhhhc
Q 010976          341 LKPSYSVYSSALRLVRS  357 (496)
Q Consensus       341 l~p~~~~y~~al~~~~~  357 (496)
                      ..|+.+.+..+...+..
T Consensus       224 ~~p~~~~~~~a~~~l~~  240 (261)
T 3qky_A          224 IFPDSPLLRTAEELYTR  240 (261)
T ss_dssp             HCTTCTHHHHHHHHHHH
T ss_pred             HCCCChHHHHHHHHHHH
Confidence            99999866666655443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.77  E-value=8.3e-18  Score=161.11  Aligned_cols=160  Identities=16%  Similarity=0.134  Sum_probs=118.0

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC----HHH
Q 010976          131 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL----HDA  206 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~----~~a  206 (496)
                      .+...|++++|+..|+++++.+|++..+++.+|.++..+|+              +++|+..|++++. .|.+    ..+
T Consensus        12 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~a~~-~~~~~~~~~~~   76 (272)
T 3u4t_A           12 FLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAK--------------YDLAQKDIETYFS-KVNATKAKSAD   76 (272)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTC--------------HHHHHHHHHHHHT-TSCTTTCCHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHh-ccCchhHHHHH
Confidence            35556777777777777777777777777777777777777              7777777777777 3332    445


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHH
Q 010976          207 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI  286 (496)
Q Consensus       207 ~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al  286 (496)
                      ++++|.++..    +|++++|+       ..|+++++++|+++.++.++|.++..+|++          ++|+..|++++
T Consensus        77 ~~~lg~~~~~----~~~~~~A~-------~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~al  135 (272)
T 3u4t_A           77 FEYYGKILMK----KGQDSLAI-------QQYQAAVDRDTTRLDMYGQIGSYFYNKGNF----------PLAIQYMEKQI  135 (272)
T ss_dssp             HHHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCTHHHHHHHHHHHHTTCH----------HHHHHHHGGGC
T ss_pred             HHHHHHHHHH----cccHHHHH-------HHHHHHHhcCcccHHHHHHHHHHHHHccCH----------HHHHHHHHHHh
Confidence            7777777777    77777777       677777777777777777777777777777          77777777777


Q ss_pred             HhcCCCHHHHHHHH-HHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          287 QLQFDFHRAIYNLG-TVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       287 ~l~P~~~~a~~~lg-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                      +++|+++.+++++| .++.. ++                   +..|..+|+++++++|++.
T Consensus       136 ~~~~~~~~~~~~l~~~~~~~-~~-------------------~~~A~~~~~~a~~~~p~~~  176 (272)
T 3u4t_A          136 RPTTTDPKVFYELGQAYYYN-KE-------------------YVKADSSFVKVLELKPNIY  176 (272)
T ss_dssp             CSSCCCHHHHHHHHHHHHHT-TC-------------------HHHHHHHHHHHHHHSTTCH
T ss_pred             hcCCCcHHHHHHHHHHHHHH-HH-------------------HHHHHHHHHHHHHhCccch
Confidence            77777777777777 44443 34                   6777777777777777765

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.76  E-value=7.6e-18  Score=165.10  Aligned_cols=178  Identities=9%  Similarity=0.044  Sum_probs=148.9

Q ss_pred             hcHHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCCCCCCCCcchhhh
Q 010976          112 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPE------DYDALYNWALVLQESADNVSLDSTSPSKDAL  185 (496)
Q Consensus       112 ~~~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~------~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~  185 (496)
                      +++++|+..+.++.    ..+..+|++++|+.+|++++.+.+.      .+.++.++|.+|..+|+              
T Consensus        31 ~~~~~A~~~~~~a~----~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~--------------   92 (292)
T 1qqe_A           31 YKFEEAADLCVQAA----TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN--------------   92 (292)
T ss_dssp             HHHHHHHHHHHHHH----HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------
T ss_pred             ccHHHHHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCC--------------
Confidence            36899999998874    3456689999999999999998532      26799999999999999              


Q ss_pred             HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHhcCCCC------HHHH
Q 010976          186 LEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMR-GRTKEAEELWKQATKNYEKAVQLNWNS------PQAL  252 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~~~~~-g~~~eA~~~~~~A~~~~~~Al~l~P~~------~~a~  252 (496)
                      +++|+.+|++|+++.|..      ..++.++|.+|..    . |++++|+       .+|++++++.|.+      ..++
T Consensus        93 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~----~lg~~~~A~-------~~~~~Al~~~~~~~~~~~~~~~~  161 (292)
T 1qqe_A           93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN----DLHDYAKAI-------DCYELAGEWYAQDQSVALSNKCF  161 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCCHHHHH-------HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hhcCHHHHH-------HHHHHHHHHHHhCCChHHHHHHH
Confidence            999999999999998754      5689999999998    8 9999999       5555555555433      5689


Q ss_pred             HHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHH-------HHHHHHHHHHHcchhHHhccCCCCCCCCCcH
Q 010976          253 NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR-------AIYNLGTVLYGLAEDTLRTGGTVNPREVSPN  325 (496)
Q Consensus       253 ~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~-------a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~  325 (496)
                      +++|.++..+|++          ++|+..|++++++.|++..       +++++|.++..+|+                 
T Consensus       162 ~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-----------------  214 (292)
T 1qqe_A          162 IKCADLKALDGQY----------IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD-----------------  214 (292)
T ss_dssp             HHHHHHHHHTTCH----------HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC-----------------
T ss_pred             HHHHHHHHHhCCH----------HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC-----------------
Confidence            9999999999999          9999999999999987653       68999999999999                 


Q ss_pred             HHHHHHHHHHHHHHhcCCcHHH
Q 010976          326 ELYSQSAIYIAAAHALKPSYSV  347 (496)
Q Consensus       326 ~~~~~A~~~~~~a~~l~p~~~~  347 (496)
                        +..|..+|++++.++|.+..
T Consensus       215 --~~~A~~~~~~al~l~p~~~~  234 (292)
T 1qqe_A          215 --AVAAARTLQEGQSEDPNFAD  234 (292)
T ss_dssp             --HHHHHHHHHGGGCC------
T ss_pred             --HHHHHHHHHHHHhhCCCCCC
Confidence              89999999999999998764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.76  E-value=1.7e-18  Score=153.13  Aligned_cols=123  Identities=17%  Similarity=0.042  Sum_probs=115.7

Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010976          136 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS  215 (496)
Q Consensus       136 g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~  215 (496)
                      +++-.+-..|++++.++|+++++++++|.+++.+|+              +++|+..|++++.++|+++.+|+++|.+|.
T Consensus        16 ~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~--------------~~eA~~~~~~al~~~P~~~~~~~~lg~~~~   81 (151)
T 3gyz_A           16 IDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGR--------------IEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ   81 (151)
T ss_dssp             HHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            334445567888999999999999999999999999              999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH
Q 010976          216 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH  293 (496)
Q Consensus       216 ~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~  293 (496)
                      .    +|++++|+       .+|+++++++|+++.+|+++|.+|..+|++          ++|+.+|++++++.|+..
T Consensus        82 ~----~g~~~~Ai-------~~~~~al~l~P~~~~~~~~lg~~~~~lg~~----------~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           82 I----KEQFQQAA-------DLYAVAFALGKNDYTPVFHTGQCQLRLKAP----------LKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             H----TTCHHHHH-------HHHHHHHHHSSSCCHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCCCHH
T ss_pred             H----HccHHHHH-------HHHHHHHhhCCCCcHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCHH
Confidence            9    99999999       899999999999999999999999999999          999999999999999865

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.76  E-value=4.4e-17  Score=159.86  Aligned_cols=183  Identities=14%  Similarity=0.065  Sum_probs=167.0

Q ss_pred             hhhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CCCCCC
Q 010976          108 HQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA-DNVSLD  176 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~-~~~~~~  176 (496)
                      +...|+++.|+..+.+++...          ...+...|++++|+..|+++++.+|+++.+++.+|.++...| +     
T Consensus        32 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----  106 (330)
T 3hym_B           32 HYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHK-----  106 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSC-----
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhh-----
Confidence            445699999999999988766          344567899999999999999999999999999999999999 8     


Q ss_pred             CCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010976          177 STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG  256 (496)
Q Consensus       177 ~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  256 (496)
                               +++|+.+|+++++++|++..+++.+|.++..    .|++++|+       ..|+++++++|++..+++++|
T Consensus       107 ---------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~~a~~~~~~~~~~~~~l~  166 (330)
T 3hym_B          107 ---------NEHARRYLSKATTLEKTYGPAWIAYGHSFAV----ESEHDQAM-------AAYFTAAQLMKGCHLPMLYIG  166 (330)
T ss_dssp             ---------HHHHHHHHHHHHTTCTTCTHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHTTTCSHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----ccCHHHHH-------HHHHHHHHhccccHHHHHHHH
Confidence                     9999999999999999999999999999999    99999999       899999999999999999999


Q ss_pred             HHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHH
Q 010976          257 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIA  336 (496)
Q Consensus       257 ~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~  336 (496)
                      .++...|++          ++|+..|+++++++|+++.+++++|.++...|+                   +.+|..+|+
T Consensus       167 ~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~-------------------~~~A~~~~~  217 (330)
T 3hym_B          167 LEYGLTNNS----------KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE-------------------WKTAEKWFL  217 (330)
T ss_dssp             HHHHHTTCH----------HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHH
T ss_pred             HHHHHHhhH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc-------------------HHHHHHHHH
Confidence            999999999          999999999999999999999999999999998                   889999988


Q ss_pred             HHHhcCCc
Q 010976          337 AAHALKPS  344 (496)
Q Consensus       337 ~a~~l~p~  344 (496)
                      +++.+.+.
T Consensus       218 ~a~~~~~~  225 (330)
T 3hym_B          218 DALEKIKA  225 (330)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHhhh
Confidence            88876543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.76  E-value=1.7e-17  Score=177.78  Aligned_cols=157  Identities=17%  Similarity=0.024  Sum_probs=131.2

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  214 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~  214 (496)
                      .|++++|+..|+++++++|++..+++++|.++..+|+              +++|++.|+++++++|++..+++++|.+|
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~   67 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGD--------------TTAGEMAVQRGLALHPGHPEAVARLGRVR   67 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHTTSTTCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4788999999999999999999999999999999999              99999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHH
Q 010976          215 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR  294 (496)
Q Consensus       215 ~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~  294 (496)
                      ..    +|++++|+       ..|+++++++|++..+++++|.+|..+|++          ++|+..|+++++++|++..
T Consensus        68 ~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~  126 (568)
T 2vsy_A           68 WT----QQRHAEAA-------VLLQQASDAAPEHPGIALWLGHALEDAGQA----------EAAAAAYTRAHQLLPEEPY  126 (568)
T ss_dssp             HH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHH
T ss_pred             HH----CCCHHHHH-------HHHHHHHhcCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHH
Confidence            99    99999999       899999999999999999999999999999          9999999999999999999


Q ss_pred             HHHHHHHHHHHc---chhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcH
Q 010976          295 AIYNLGTVLYGL---AEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  345 (496)
Q Consensus       295 a~~~lg~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~  345 (496)
                      +++++|.++..+   |+                   +.+|..+|+++++.+|..
T Consensus       127 ~~~~l~~~~~~~~~~g~-------------------~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A          127 ITAQLLNWRRRLCDWRA-------------------LDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHHHHHHHHTTCCTT-------------------HHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhhcccc-------------------HHHHHHHHHHHHhcCCcc
Confidence            999999999999   87                   788999999999998874

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.75  E-value=1.1e-16  Score=171.19  Aligned_cols=165  Identities=19%  Similarity=0.193  Sum_probs=111.0

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976          134 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA  213 (496)
Q Consensus       134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  213 (496)
                      +.|++++|+..|+++++++|++..+|+.+|.+|...|+              +++|++.|+++++++|++..+++.+|.+
T Consensus       385 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~  450 (597)
T 2xpi_A          385 CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE--------------HDQAISAYTTAARLFQGTHLPYLFLGMQ  450 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHTTTTCSHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            34444444444444444444444444444444444444              4444444444444444444444444444


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh-----
Q 010976          214 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL-----  288 (496)
Q Consensus       214 ~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l-----  288 (496)
                      |..    .|++++|+       ..|+++++++|.++.+++++|.+|...|++          ++|+..|++++++     
T Consensus       451 ~~~----~g~~~~A~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~  509 (597)
T 2xpi_A          451 HMQ----LGNILLAN-------EYLQSSYALFQYDPLLLNELGVVAFNKSDM----------QTAINHFQNALLLVKKTQ  509 (597)
T ss_dssp             HHH----HTCHHHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHSC
T ss_pred             HHH----cCCHHHHH-------HHHHHHHHhCCCChHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhhhccc
Confidence            444    44444444       677777777777777777777777777777          9999999999999     


Q ss_pred             -cCCC-HHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Q 010976          289 -QFDF-HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL  352 (496)
Q Consensus       289 -~P~~-~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al  352 (496)
                       +|++ ..+++++|.+|...|+                   +.+|..+|+++++++|++......+
T Consensus       510 ~~p~~~~~~~~~l~~~~~~~g~-------------------~~~A~~~~~~~~~~~p~~~~~~~~l  556 (597)
T 2xpi_A          510 SNEKPWAATWANLGHAYRKLKM-------------------YDAAIDALNQGLLLSTNDANVHTAI  556 (597)
T ss_dssp             CCSGGGHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHhcC-------------------HHHHHHHHHHHHHhCCCChHHHHHH
Confidence             6665 7899999999999999                   8999999999999999877443333

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.75  E-value=2.6e-18  Score=151.99  Aligned_cols=128  Identities=12%  Similarity=0.115  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      +-.+-..|+++++++|++..+++++|.++..    +|++++|+       ..|++++.++|+++.+|+++|.+|..+|++
T Consensus        18 ~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~----~g~~~eA~-------~~~~~al~~~P~~~~~~~~lg~~~~~~g~~   86 (151)
T 3gyz_A           18 AINSGATLKDINAIPDDMMDDIYSYAYDFYN----KGRIEEAE-------VFFRFLCIYDFYNVDYIMGLAAIYQIKEQF   86 (151)
T ss_dssp             HHHTSCCTGGGCCSCHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHCCCCHHHHhCCCHHHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHccH
Confidence            5556667889999999999999999999999    99999999       899999999999999999999999999999


Q ss_pred             chHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcH
Q 010976          266 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  345 (496)
Q Consensus       266 ~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~  345 (496)
                                ++|+.+|+++++++|+++.+++++|.+|..+|+                   +.+|..+|++++++.|+.
T Consensus        87 ----------~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~-------------------~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A           87 ----------QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA-------------------PLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             ----------HHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHCCCH
T ss_pred             ----------HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCCCH
Confidence                      999999999999999999999999999999999                   999999999999999998


Q ss_pred             HHHHHHHH
Q 010976          346 SVYSSALR  353 (496)
Q Consensus       346 ~~y~~al~  353 (496)
                      +.-..+-.
T Consensus       138 ~~~~~A~~  145 (151)
T 3gyz_A          138 KLKIKAQS  145 (151)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            85444433

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.74  E-value=1.6e-17  Score=141.93  Aligned_cols=120  Identities=18%  Similarity=0.219  Sum_probs=112.1

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhh
Q 010976          195 EATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTI  274 (496)
Q Consensus       195 ~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~  274 (496)
                      ++..++|+.+.++.++|.+|+.    .|++++|+       ..|+++++++|.++.+|+++|.+|..+|++         
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~~~~~~~~~~~~---------   63 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFK----KGDYPTAM-------RHYNEAVKRDPENAILYSNRAACLTKLMEF---------   63 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------
T ss_pred             HHHHHCHHHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHhhHHHhhccH---------
Confidence            4566899999999999999999    99999999       899999999999999999999999999999         


Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHh
Q 010976          275 VRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL  354 (496)
Q Consensus       275 ~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~  354 (496)
                       ++|+..|+++++++|++..+++++|.++..+|+                   |.+|..+|+++++++|++......+..
T Consensus        64 -~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-------------------~~~A~~~~~~al~l~P~~~~a~~~l~~  123 (126)
T 4gco_A           64 -QRALDDCDTCIRLDSKFIKGYIRKAACLVAMRE-------------------WSKAQRAYEDALQVDPSNEEAREGVRN  123 (126)
T ss_dssp             -HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence             999999999999999999999999999999999                   999999999999999999987776654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.74  E-value=1.1e-16  Score=166.06  Aligned_cols=202  Identities=12%  Similarity=-0.012  Sum_probs=168.2

Q ss_pred             CChhhhhhcHHHHHHHHHHhhccc-------------------hhhhHhhccHHHHHHHHHHHHHhC--------CCCHH
Q 010976          105 NTPHQLAEQNNAAMELINSVTGVD-------------------EEGRSRQRILTFAAKRYANAIERN--------PEDYD  157 (496)
Q Consensus       105 ~~~~~~~~~~~~A~~~~~~~l~~~-------------------~~~~~~~g~~~~Ai~~~~~al~~~--------P~~~~  157 (496)
                      +..+...|++++|+..+.+++.+.                   +..+..+|++++|+.+|++++++.        +..+.
T Consensus        58 g~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~  137 (472)
T 4g1t_A           58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPE  137 (472)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHH
Confidence            334456799999999999987652                   334667899999999999999873        46789


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 010976          158 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN  237 (496)
Q Consensus       158 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~  237 (496)
                      ++.++|.++...+.            ++|++|+.+|+++++++|+++.+++++|.++.. ....++.++|+       ..
T Consensus       138 ~~~~~g~~~~~~~~------------~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~-l~~~~~~~~al-------~~  197 (472)
T 4g1t_A          138 LDCEEGWTRLKCGG------------NQNERAKVCFEKALEKKPKNPEFTSGLAIASYR-LDNWPPSQNAI-------DP  197 (472)
T ss_dssp             HHHHHHHHHHHHCT------------THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-HHHSCCCCCTH-------HH
T ss_pred             HHHHHHHHHHHHcc------------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hcCchHHHHHH-------HH
Confidence            99999998888764            449999999999999999999999999998654 11256777777       89


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCC
Q 010976          238 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTV  317 (496)
Q Consensus       238 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~  317 (496)
                      |+++++++|++..++.++|..+..+++.      .+++++|+..|++++.++|++..++.++|.+|...|+         
T Consensus       198 ~~~al~l~p~~~~~~~~l~~~~~~~~~~------~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~---------  262 (472)
T 4g1t_A          198 LRQAIRLNPDNQYLKVLLALKLHKMREE------GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE---------  262 (472)
T ss_dssp             HHHHHHHCSSCHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC---------
T ss_pred             HHHHhhcCCcchHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc---------
Confidence            9999999999999999999988877654      4445899999999999999999999999999999999         


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHH
Q 010976          318 NPREVSPNELYSQSAIYIAAAHALKPSYSVYSSA  351 (496)
Q Consensus       318 ~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~a  351 (496)
                                +..|..+|.++++++|++......
T Consensus       263 ----------~~~A~~~~~~al~~~p~~~~~~~~  286 (472)
T 4g1t_A          263 ----------PDKAIELLKKALEYIPNNAYLHCQ  286 (472)
T ss_dssp             ----------HHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             ----------hHHHHHHHHHHHHhCCChHHHHHH
Confidence                      899999999999999998744333

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.73  E-value=4.3e-17  Score=169.24  Aligned_cols=213  Identities=13%  Similarity=0.021  Sum_probs=159.0

Q ss_pred             ChhhhhhcHHHHHHHHHHhhccch------------------hhhH--hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976          106 TPHQLAEQNNAAMELINSVTGVDE------------------EGRS--RQRILTFAAKRYANAIERNPEDYDALYNWALV  165 (496)
Q Consensus       106 ~~~~~~~~~~~A~~~~~~~l~~~~------------------~~~~--~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~  165 (496)
                      ..+...|++++|+..+.+++.+..                  .++.  ..++|++|+.+|+++++++|++++++..+|.+
T Consensus       102 ~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~  181 (472)
T 4g1t_A          102 WVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIA  181 (472)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            345578999999999998876531                  1122  23689999999999999999999999999999


Q ss_pred             HHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC
Q 010976          166 LQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN  245 (496)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~  245 (496)
                      +..+++.           +.+++|++.|+++++++|++..++.++|..+...+...|++++|+       .+|++++.++
T Consensus       182 ~~~l~~~-----------~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~-------~~~~~al~~~  243 (472)
T 4g1t_A          182 SYRLDNW-----------PPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGE-------KLVEEALEKA  243 (472)
T ss_dssp             HHHHHHS-----------CCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHH-------HHHHHHHHHC
T ss_pred             HHHhcCc-----------hHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHH-------HHHHHHHHhC
Confidence            7765430           117889999999999999999999999998887222244555666       8999999999


Q ss_pred             CCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcH
Q 010976          246 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN  325 (496)
Q Consensus       246 P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~  325 (496)
                      |.+..+++++|.+|...|++          ++|+..|+++++++|++..+++++|.+|...+..................
T Consensus       244 ~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~  313 (472)
T 4g1t_A          244 PGVTDVLRSAAKFYRRKDEP----------DKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL  313 (472)
T ss_dssp             SSCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHH
T ss_pred             ccHHHHHHHHHHHHHHcCch----------HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            99999999999999999999          99999999999999999999999999998765433222211111111112


Q ss_pred             HHHHHHHHHHHHHHhcCCcHH
Q 010976          326 ELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       326 ~~~~~A~~~~~~a~~l~p~~~  346 (496)
                      ..+..|..+|++++.++|.+.
T Consensus       314 ~~~~~A~~~~~~a~~~~~~~~  334 (472)
T 4g1t_A          314 ELIGHAVAHLKKADEANDNLF  334 (472)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTC
T ss_pred             hhHHHHHHHHHHHhhcCCchh
Confidence            234555666666666665543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.73  E-value=2.5e-17  Score=172.03  Aligned_cols=167  Identities=16%  Similarity=0.163  Sum_probs=130.2

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976          134 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA  213 (496)
Q Consensus       134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  213 (496)
                      ..|++++|+..|+++++++|++..++..+|.++...|+              +++|+..|+++++.+|++..+++++|.+
T Consensus       316 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~la~~  381 (514)
T 2gw1_A          316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENK--------------FDDCETLFSEAKRKFPEAPEVPNFFAEI  381 (514)
T ss_dssp             HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTC--------------HHHHHHHHHHHHHHSTTCSHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence            34455555555555555555555555555555555555              7777777777777777777777777777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHH---ccCcchHHHhhhhHHHHHHHHHH
Q 010976          214 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ------ALNNWGLALQE---LSAIVPAREKQTIVRTAISKFRA  284 (496)
Q Consensus       214 ~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~------a~~~lg~~l~~---~g~~~~A~~~~~~~~~Ai~~~~~  284 (496)
                      +..    .|++++|+       ..|++++.++|++..      +++++|.++..   .|++          ++|+..|++
T Consensus       382 ~~~----~~~~~~A~-------~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------~~A~~~~~~  440 (514)
T 2gw1_A          382 LTD----KNDFDKAL-------KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF----------IEATNLLEK  440 (514)
T ss_dssp             HHH----TTCHHHHH-------HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH----------HHHHHHHHH
T ss_pred             HHH----CCCHHHHH-------HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH----------HHHHHHHHH
Confidence            777    77777777       788888888888755      99999999999   8998          999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHh
Q 010976          285 AIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL  354 (496)
Q Consensus       285 Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~  354 (496)
                      +++++|++..+++++|.++...|+                   +..|..+|+++++++|++......+..
T Consensus       441 a~~~~~~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~  491 (514)
T 2gw1_A          441 ASKLDPRSEQAKIGLAQMKLQQED-------------------IDEAITLFEESADLARTMEEKLQAITF  491 (514)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred             HHHhCcccHHHHHHHHHHHHHhcC-------------------HHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            999999999999999999999999                   899999999999999999966555543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.73  E-value=1.5e-17  Score=150.18  Aligned_cols=155  Identities=10%  Similarity=-0.052  Sum_probs=134.7

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  211 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  211 (496)
                      +...|++++|+..|+++++.+|+++.+++++|.++...|+              +++|+..|++++.++| ++..+..++
T Consensus        16 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~--------------~~~A~~~~~~a~~~~p-~~~~~~~~~   80 (176)
T 2r5s_A           16 LLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQ--------------FELAQELLATIPLEYQ-DNSYKSLIA   80 (176)
T ss_dssp             HHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTC--------------HHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCC--------------HHHHHHHHHHhhhccC-ChHHHHHHH
Confidence            4567999999999999999999999999999999999999              9999999999999999 887776666


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976          212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  291 (496)
Q Consensus       212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~  291 (496)
                      .+....   .++..+|+       ..|+++++++|+++.+++++|.++...|++          ++|+..|+++++++|+
T Consensus        81 ~~~~~~---~~~~~~a~-------~~~~~al~~~P~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~l~~~p~  140 (176)
T 2r5s_A           81 KLELHQ---QAAESPEL-------KRLEQELAANPDNFELACELAVQYNQVGRD----------EEALELLWNILKVNLG  140 (176)
T ss_dssp             HHHHHH---HHTSCHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTTCTT
T ss_pred             HHHHHh---hcccchHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcccH----------HHHHHHHHHHHHhCcc
Confidence            553320   22333455       899999999999999999999999999999          9999999999999998


Q ss_pred             C--HHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHh
Q 010976          292 F--HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHA  340 (496)
Q Consensus       292 ~--~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~  340 (496)
                      +  ..++.++|.++..+|+                   +..|..+|++++.
T Consensus       141 ~~~~~a~~~l~~~~~~~g~-------------------~~~A~~~y~~al~  172 (176)
T 2r5s_A          141 AQDGEVKKTFMDILSALGQ-------------------GNAIASKYRRQLY  172 (176)
T ss_dssp             TTTTHHHHHHHHHHHHHCS-------------------SCHHHHHHHHHHH
T ss_pred             cChHHHHHHHHHHHHHhCC-------------------CCcHHHHHHHHHH
Confidence            6  6699999999999998                   5567777776653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.73  E-value=1.5e-16  Score=149.44  Aligned_cols=168  Identities=15%  Similarity=0.069  Sum_probs=141.7

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHH--
Q 010976          131 GRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD--  205 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~--  205 (496)
                      .+...|++++|+..|+++++.+|++   ..+++.+|.+|..+|+              +++|+..|+++++++|++..  
T Consensus        13 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~--------------~~~A~~~~~~~l~~~P~~~~~~   78 (225)
T 2yhc_A           13 QKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD--------------LPLAQAAIDRFIRLNPTHPNID   78 (225)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCTTHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHHCcCCCcHH
Confidence            3556899999999999999999987   4799999999999999              99999999999999999864  


Q ss_pred             -HHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-----------------HHHH
Q 010976          206 -AFYNWAIAISDRAKMRG-----------RTKEAEELWKQATKNYEKAVQLNWNSPQAL-----------------NNWG  256 (496)
Q Consensus       206 -a~~~lg~~~~~~~~~~g-----------~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~-----------------~~lg  256 (496)
                       +++.+|.++..    +|           ....-...+++|+..|+++++.+|++..++                 ..+|
T Consensus        79 ~a~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a  154 (225)
T 2yhc_A           79 YVMYMRGLTNMA----LDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVA  154 (225)
T ss_dssp             HHHHHHHHHHHH----HHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh----hhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence             89999999876    32           111112344555599999999999987654                 5678


Q ss_pred             HHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHH
Q 010976          257 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH---RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAI  333 (496)
Q Consensus       257 ~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~---~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~  333 (496)
                      .+|...|++          ++|+..|+++++..|+++   .+++.+|.++..+|+                   +..|..
T Consensus       155 ~~~~~~~~~----------~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~-------------------~~~A~~  205 (225)
T 2yhc_A          155 EYYTERGAW----------VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM-------------------NAQAEK  205 (225)
T ss_dssp             HHHHHHTCH----------HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC-------------------HHHHHH
T ss_pred             HHHHHcCcH----------HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC-------------------cHHHHH
Confidence            888888888          999999999999999986   789999999999999                   889999


Q ss_pred             HHHHHHhcCCcH
Q 010976          334 YIAAAHALKPSY  345 (496)
Q Consensus       334 ~~~~a~~l~p~~  345 (496)
                      +++++....|+.
T Consensus       206 ~~~~l~~~~~~~  217 (225)
T 2yhc_A          206 VAKIIAANSSNT  217 (225)
T ss_dssp             HHHHHHHCCSCC
T ss_pred             HHHHHHhhCCCc
Confidence            998888877754

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.73  E-value=1.4e-17  Score=146.43  Aligned_cols=128  Identities=16%  Similarity=0.073  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 010976          141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKM  220 (496)
Q Consensus       141 Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~  220 (496)
                      +-..|++++.++|++..+++++|.++...|+              +++|+..|++++.++|+++.+|+++|.++..    
T Consensus         6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----   67 (148)
T 2vgx_A            6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGX--------------YEDAHXVFQALCVLDHYDSRFFLGLGACRQA----   67 (148)
T ss_dssp             CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----
T ss_pred             hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHHcCcccHHHHHHHHHHHHH----
Confidence            3456889999999999999999999999999              9999999999999999999999999999999    


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010976          221 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG  300 (496)
Q Consensus       221 ~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg  300 (496)
                      +|++++|+       .+|++++.++|+++.+++++|.+|..+|++          ++|+..|+++++++|+++.....+.
T Consensus        68 ~g~~~~A~-------~~~~~al~l~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~  130 (148)
T 2vgx_A           68 MGQYDLAI-------HSYSYGAVMDIXEPRFPFHAAECLLQXGEL----------AEAESGLFLAQELIANXPEFXELST  130 (148)
T ss_dssp             TTCHHHHH-------HHHHHHHHHSTTCTHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             HhhHHHHH-------HHHHHHHhcCCCCchHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCCCcchHHHH
Confidence            99999999       899999999999999999999999999999          9999999999999998876544444


Q ss_pred             HHH
Q 010976          301 TVL  303 (496)
Q Consensus       301 ~~~  303 (496)
                      .+.
T Consensus       131 ~~~  133 (148)
T 2vgx_A          131 RVS  133 (148)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.73  E-value=9.2e-17  Score=169.10  Aligned_cols=180  Identities=14%  Similarity=0.099  Sum_probs=164.8

Q ss_pred             hhcHHHHHHHHHHhhccc-----------------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC
Q 010976          111 AEQNNAAMELINSVTGVD-----------------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNV  173 (496)
Q Consensus       111 ~~~~~~A~~~~~~~l~~~-----------------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~  173 (496)
                      .++++.|+..+.+++...                 +..+...|++++|+..|+++++.+|+ ..++..+|.++...|+  
T Consensus       215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~--  291 (537)
T 3fp2_A          215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKEN--  291 (537)
T ss_dssp             HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSC--
T ss_pred             HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcC--
Confidence            357888888888877654                 23455679999999999999999999 9999999999999999  


Q ss_pred             CCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 010976          174 SLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALN  253 (496)
Q Consensus       174 ~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~  253 (496)
                                  +++|+..|+++++++|++..+++.+|.++..    .|++++|+       ..|+++++++|++..+++
T Consensus       292 ------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~~a~~~~~~~~~~~~  348 (537)
T 3fp2_A          292 ------------SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI----LQDYKNAK-------EDFQKAQSLNPENVYPYI  348 (537)
T ss_dssp             ------------CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCSHHHH
T ss_pred             ------------HHHHHHHHHHHhccCCCCHHHHHHHHHHHHh----cCCHHHHH-------HHHHHHHHhCCCCHHHHH
Confidence                        9999999999999999999999999999999    99999999       899999999999999999


Q ss_pred             HHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHH
Q 010976          254 NWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAI  333 (496)
Q Consensus       254 ~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~  333 (496)
                      ++|.++...|++          ++|+..|+++++++|+++.+++++|.++...|+                   +..|..
T Consensus       349 ~la~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------------------~~~A~~  399 (537)
T 3fp2_A          349 QLACLLYKQGKF----------TESEAFFNETKLKFPTLPEVPTFFAEILTDRGD-------------------FDTAIK  399 (537)
T ss_dssp             HHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC-------------------HHHHHH
T ss_pred             HHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-------------------HHHHHH
Confidence            999999999999          999999999999999999999999999999999                   888888


Q ss_pred             HHHHHHhcCCcH
Q 010976          334 YIAAAHALKPSY  345 (496)
Q Consensus       334 ~~~~a~~l~p~~  345 (496)
                      +|+++++++|..
T Consensus       400 ~~~~a~~~~~~~  411 (537)
T 3fp2_A          400 QYDIAKRLEEVQ  411 (537)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHcCCcc
Confidence            888888877654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.72  E-value=1.8e-17  Score=166.12  Aligned_cols=140  Identities=16%  Similarity=0.128  Sum_probs=135.1

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC----------
Q 010976          134 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL----------  203 (496)
Q Consensus       134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~----------  203 (496)
                      .++++++|+..|++++..+|+++.+++++|.+|+..|+              +++|+..|++++.++|++          
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~--------------~~~A~~~y~~Al~~~p~~~~~~~~~~~~  190 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGK--------------YKQALLQYKKIVSWLEYESSFSNEEAQK  190 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHTTTCCCCCSHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHhhccccCChHHHHH
Confidence            35778889999999999999999999999999999999              999999999999999999          


Q ss_pred             -----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHH
Q 010976          204 -----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA  278 (496)
Q Consensus       204 -----~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~A  278 (496)
                           ..+|+++|.+|..    +|++++|+       .+|+++++++|+++.+++++|.+|..+|++          ++|
T Consensus       191 ~~~~~~~~~~nla~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~~A  249 (336)
T 1p5q_A          191 AQALRLASHLNLAMCHLK----LQAFSAAI-------ESCNKALELDSNNEKGLSRRGEAHLAVNDF----------ELA  249 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHH
T ss_pred             HHHHHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHCCCH----------HHH
Confidence                 6999999999999    99999999       899999999999999999999999999999          999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          279 ISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       279 i~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                      +..|+++++++|++..++.++|.++..+|+
T Consensus       250 ~~~~~~al~l~P~~~~a~~~l~~~~~~~~~  279 (336)
T 1p5q_A          250 RADFQKVLQLYPNNKAAKTQLAVCQQRIRR  279 (336)
T ss_dssp             HHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.71  E-value=7.4e-17  Score=157.83  Aligned_cols=143  Identities=10%  Similarity=0.001  Sum_probs=135.4

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010976          131 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  210 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~l  210 (496)
                      .+...|++++|+..|+++++.+|+++.+++++|.++..+|+              +++|+..|++++..+|+....+.+.
T Consensus       126 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~--------------~~~A~~~l~~~~~~~p~~~~~~~~~  191 (287)
T 3qou_A          126 QLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNR--------------SEDAEAVLXTIPLQDQDTRYQGLVA  191 (287)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC--------------HHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCC--------------HHHHHHHHHhCchhhcchHHHHHHH
Confidence            35567999999999999999999999999999999999999              9999999999999999888888888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcC
Q 010976          211 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF  290 (496)
Q Consensus       211 g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P  290 (496)
                      +..+..    .++.++|+       ..|+++++.+|+++.+++++|.+|...|++          ++|+..|+++++.+|
T Consensus       192 ~~~l~~----~~~~~~a~-------~~l~~al~~~P~~~~~~~~la~~l~~~g~~----------~~A~~~l~~~l~~~p  250 (287)
T 3qou_A          192 QIELLX----QAADTPEI-------QQLQQQVAENPEDAALATQLALQLHQVGRN----------EEALELLFGHLRXDL  250 (287)
T ss_dssp             HHHHHH----HHTSCHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCT
T ss_pred             HHHHHh----hcccCccH-------HHHHHHHhcCCccHHHHHHHHHHHHHcccH----------HHHHHHHHHHHhccc
Confidence            888888    88888888       899999999999999999999999999999          999999999999999


Q ss_pred             CC--HHHHHHHHHHHHHcch
Q 010976          291 DF--HRAIYNLGTVLYGLAE  308 (496)
Q Consensus       291 ~~--~~a~~~lg~~~~~~g~  308 (496)
                      ++  ..++.++|.++..+|+
T Consensus       251 ~~~~~~a~~~l~~~~~~~g~  270 (287)
T 3qou_A          251 TAADGQTRXTFQEILAALGT  270 (287)
T ss_dssp             TGGGGHHHHHHHHHHHHHCT
T ss_pred             ccccchHHHHHHHHHHHcCC
Confidence            99  8999999999999997

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.71  E-value=8.7e-17  Score=157.53  Aligned_cols=186  Identities=14%  Similarity=0.056  Sum_probs=150.6

Q ss_pred             hhhhhhcHHHHHHHHHHhhccc----------------hhhhHhhccHHHHHHHHHHHHHhCCCC------HHHHHHHHH
Q 010976          107 PHQLAEQNNAAMELINSVTGVD----------------EEGRSRQRILTFAAKRYANAIERNPED------YDALYNWAL  164 (496)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~l~~~----------------~~~~~~~g~~~~Ai~~~~~al~~~P~~------~~a~~~lg~  164 (496)
                      .+...|++++|+..+.+++...                +..+..+|++++|+.+|++++++.|..      ..++.++|.
T Consensus        46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~  125 (292)
T 1qqe_A           46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE  125 (292)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3556788999999988887763                334566799999999999999998754      568999999


Q ss_pred             HHHHh-cCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 010976          165 VLQES-ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN  237 (496)
Q Consensus       165 ~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~  237 (496)
                      +|... |+              +++|+.+|++|+++.|.+      ..++.++|.++..    +|++++|+       ..
T Consensus       126 ~~~~~lg~--------------~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~-------~~  180 (292)
T 1qqe_A          126 ILENDLHD--------------YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL----DGQYIEAS-------DI  180 (292)
T ss_dssp             HHHHTTCC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHH-------HH
T ss_pred             HHHHhhcC--------------HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----hCCHHHHH-------HH
Confidence            99996 99              999999999999998864      5789999999999    99999999       89


Q ss_pred             HHHHHhcCCCCHH-------HHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHH
Q 010976          238 YEKAVQLNWNSPQ-------ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA-----IYNLGTVLYG  305 (496)
Q Consensus       238 ~~~Al~l~P~~~~-------a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a-----~~~lg~~~~~  305 (496)
                      |+++++++|++..       +++++|.++..+|++          ++|+.+|+++++++|++...     +.+++.++..
T Consensus       181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~  250 (292)
T 1qqe_A          181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA----------VAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNE  250 (292)
T ss_dssp             HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH----------HHHHHHHHGGGCC---------HHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHc
Confidence            9999999887643       689999999999999          99999999999999987764     3445554431


Q ss_pred             --cchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          306 --LAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       306 --~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                        .++                   +..|...|.++..++|...
T Consensus       251 ~~~~~-------------------~~~A~~~~~~~~~l~~~~~  274 (292)
T 1qqe_A          251 GDSEQ-------------------LSEHCKEFDNFMRLDKWKI  274 (292)
T ss_dssp             TCTTT-------------------HHHHHHHHTTSSCCCHHHH
T ss_pred             CCHHH-------------------HHHHHHHhccCCccHHHHH
Confidence              222                   7889999999999998775

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.71  E-value=3.8e-16  Score=149.65  Aligned_cols=178  Identities=17%  Similarity=0.082  Sum_probs=153.7

Q ss_pred             hhhhhcHHHHHHHHHHhhccc-------------hhhhHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH---
Q 010976          108 HQLAEQNNAAMELINSVTGVD-------------EEGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQE---  168 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~-------------~~~~~~~g~~~~Ai~~~~~al~~~P~~---~~a~~~lg~~~~~---  168 (496)
                      +...|+++.|+..+.+++...             +.++..+|++++|+..|+++++++|++   +.+++.+|.++..   
T Consensus        25 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~  104 (261)
T 3qky_A           25 FYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSP  104 (261)
T ss_dssp             HHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCC
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcc
Confidence            456789999999999998764             345677899999999999999998854   6899999999999   


Q ss_pred             -----hcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHHHHHcCCHHH
Q 010976          169 -----SADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF-----------------YNWAIAISDRAKMRGRTKE  226 (496)
Q Consensus       169 -----~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~-----------------~~lg~~~~~~~~~~g~~~e  226 (496)
                           +|+              +++|+..|++++..+|++..+.                 +++|.+|..    +|++++
T Consensus       105 ~~~~~~~~--------------~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~  166 (261)
T 3qky_A          105 PYELDQTD--------------TRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER----RELYEA  166 (261)
T ss_dssp             CTTSCCHH--------------HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHH
T ss_pred             cccccchh--------------HHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----ccCHHH
Confidence                 666              9999999999999999987665                 889999999    999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH---HHHHHHH
Q 010976          227 AEELWKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH---RAIYNLG  300 (496)
Q Consensus       227 A~~~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~---~a~~~lg  300 (496)
                      |+       ..|+++++.+|+   .+.+++++|.+|..+|+...+....|++++|+..|+++++..|+++   .+...++
T Consensus       167 A~-------~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~  239 (261)
T 3qky_A          167 AA-------VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYT  239 (261)
T ss_dssp             HH-------HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HH-------HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            99       899999999998   5779999999999997665555566777999999999999999994   6777788


Q ss_pred             HHHHHcchhH
Q 010976          301 TVLYGLAEDT  310 (496)
Q Consensus       301 ~~~~~~g~~~  310 (496)
                      .++..+++..
T Consensus       240 ~~~~~~~~~~  249 (261)
T 3qky_A          240 RARQRLTELE  249 (261)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            8888888743

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.70  E-value=3.3e-16  Score=145.47  Aligned_cols=119  Identities=18%  Similarity=0.146  Sum_probs=114.9

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHHH
Q 010976          155 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN----------------WAIAISDRA  218 (496)
Q Consensus       155 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~----------------lg~~~~~~~  218 (496)
                      .++.+...|..+...|+              +++|+..|+++++++|+++.+++.                +|.+|..  
T Consensus         3 ~~~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~--   66 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQ--------------NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK--   66 (208)
T ss_dssp             CHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHH--
T ss_pred             CHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHH--
Confidence            56788999999999999              999999999999999999999999                9999999  


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHH
Q 010976          219 KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN  298 (496)
Q Consensus       219 ~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~  298 (496)
                        +|++++|+       ..|+++++++|+++.+++++|.++..+|++          ++|+..|+++++++|+++.++++
T Consensus        67 --~g~~~~A~-------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~P~~~~a~~~  127 (208)
T 3urz_A           67 --NRNYDKAY-------LFYKELLQKAPNNVDCLEACAEMQVCRGQE----------KDALRMYEKILQLEADNLAANIF  127 (208)
T ss_dssp             --TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             --CCCHHHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHH
Confidence              99999999       899999999999999999999999999999          99999999999999999999999


Q ss_pred             HHHHHHHcch
Q 010976          299 LGTVLYGLAE  308 (496)
Q Consensus       299 lg~~~~~~g~  308 (496)
                      +|.+|+..|+
T Consensus       128 lg~~~~~~~~  137 (208)
T 3urz_A          128 LGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhH
Confidence            9999988875

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.70  E-value=1.3e-16  Score=166.59  Aligned_cols=190  Identities=15%  Similarity=0.143  Sum_probs=168.1

Q ss_pred             hhhhhhcHHHHHHHHHHhhccc---------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 010976          107 PHQLAEQNNAAMELINSVTGVD---------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS  177 (496)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~l~~~---------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~  177 (496)
                      .+...|+++.|+..+.+++...         +..+...|++++|+..|++++..+|++..++..+|.++...|+      
T Consensus       246 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------  319 (514)
T 2gw1_A          246 FKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN------  319 (514)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC------
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC------
Confidence            3456788888888888877654         3345567889999999999999999999999999999999999      


Q ss_pred             CCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976          178 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL  257 (496)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  257 (496)
                              +++|+..|+++++++|++..+++++|.++..    .|++++|+       ..|+++++.+|+++.+++++|.
T Consensus       320 --------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~la~  380 (514)
T 2gw1_A          320 --------YDQAGKDFDKAKELDPENIFPYIQLACLAYR----ENKFDDCE-------TLFSEAKRKFPEAPEVPNFFAE  380 (514)
T ss_dssp             --------TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT----TTCHHHHH-------HHHHHHHHHSTTCSHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHHhChhhHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHHcccCHHHHHHHHH
Confidence                    9999999999999999999999999999999    99999998       7888888999999999999999


Q ss_pred             HHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHH---cchhHHhccCCCCCCCCCcHHHH
Q 010976          258 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR------AIYNLGTVLYG---LAEDTLRTGGTVNPREVSPNELY  328 (496)
Q Consensus       258 ~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~------a~~~lg~~~~~---~g~~~~a~~~~~~~~~~~~~~~~  328 (496)
                      ++...|++          ++|+..|+++++++|++..      +++++|.++..   .|+                   +
T Consensus       381 ~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------------------~  431 (514)
T 2gw1_A          381 ILTDKNDF----------DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN-------------------F  431 (514)
T ss_dssp             HHHHTTCH----------HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH-------------------H
T ss_pred             HHHHCCCH----------HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC-------------------H
Confidence            99999999          9999999999999998865      99999999999   998                   8


Q ss_pred             HHHHHHHHHHHhcCCcHHHHHH
Q 010976          329 SQSAIYIAAAHALKPSYSVYSS  350 (496)
Q Consensus       329 ~~A~~~~~~a~~l~p~~~~y~~  350 (496)
                      ..|..+|++++.++|++.....
T Consensus       432 ~~A~~~~~~a~~~~~~~~~~~~  453 (514)
T 2gw1_A          432 IEATNLLEKASKLDPRSEQAKI  453 (514)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHH
Confidence            9999999999999998874433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.69  E-value=2.4e-15  Score=147.48  Aligned_cols=165  Identities=8%  Similarity=-0.059  Sum_probs=144.3

Q ss_pred             hhhHhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHH
Q 010976          130 EGRSRQRILTFAAKRYANAIER--NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF  207 (496)
Q Consensus       130 ~~~~~~g~~~~Ai~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~  207 (496)
                      ..+...+++++|+..+++++..  +|+++.+++.+|.++...|+              +++|++.|++     |++..++
T Consensus        73 ~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~--------------~~~Al~~l~~-----~~~~~~~  133 (291)
T 3mkr_A           73 EYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN--------------PDAALRTLHQ-----GDSLECM  133 (291)
T ss_dssp             HHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTC--------------HHHHHHHHTT-----CCSHHHH
T ss_pred             HHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHhC-----CCCHHHH
Confidence            3355568999999999999986  69999999999999999999              9999999998     8999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH--HHHHHccCcchHHHhhhhHHHHHHHHHHH
Q 010976          208 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG--LALQELSAIVPAREKQTIVRTAISKFRAA  285 (496)
Q Consensus       208 ~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg--~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A  285 (496)
                      ..+|.+|..    +|++++|+       ..|+++++.+|++.......+  .++...|++          ++|+..|+++
T Consensus       134 ~~l~~~~~~----~g~~~~A~-------~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~----------~eA~~~~~~~  192 (291)
T 3mkr_A          134 AMTVQILLK----LDRLDLAR-------KELKKMQDQDEDATLTQLATAWVSLAAGGEKL----------QDAYYIFQEM  192 (291)
T ss_dssp             HHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHH----------HHHHHHHHHH
T ss_pred             HHHHHHHHH----CCCHHHHH-------HHHHHHHhhCcCcHHHHHHHHHHHHHhCchHH----------HHHHHHHHHH
Confidence            999999999    99999999       888999999999865443333  223333666          9999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 010976          286 IQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALR  353 (496)
Q Consensus       286 l~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~  353 (496)
                      ++.+|+++.+++++|.++..+|+                   +.+|..+|+++++++|+++.....+.
T Consensus       193 l~~~p~~~~~~~~la~~~~~~g~-------------------~~eA~~~l~~al~~~p~~~~~l~~l~  241 (291)
T 3mkr_A          193 ADKCSPTLLLLNGQAACHMAQGR-------------------WEAAEGVLQEALDKDSGHPETLINLV  241 (291)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999999999999999999999                   99999999999999999996544443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.69  E-value=8e-17  Score=140.08  Aligned_cols=130  Identities=15%  Similarity=0.054  Sum_probs=117.4

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcC
Q 010976          143 KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG  222 (496)
Q Consensus       143 ~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g  222 (496)
                      ..|++++.++|++..+++.+|.++...|+              +++|+..|++++.++|+++.+|+++|.++..    +|
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g   66 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGK--------------WDDAQKIFQALCMLDHYDARYFLGLGACRQS----LG   66 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHcc--------------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----Hh
Confidence            56788899999999999999999999999              9999999999999999999999999999999    99


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010976          223 RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV  302 (496)
Q Consensus       223 ~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~  302 (496)
                      ++++|+       .+|++++.++|+++.+++++|.+|..+|++          ++|+..|+++++++|+++........+
T Consensus        67 ~~~~A~-------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~  129 (142)
T 2xcb_A           67 LYEQAL-------QSYSYGALMDINEPRFPFHAAECHLQLGDL----------DGAESGFYSARALAAAQPAHEALAARA  129 (142)
T ss_dssp             CHHHHH-------HHHHHHHHHCTTCTHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred             hHHHHH-------HHHHHHHhcCCCCcHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence            999999       899999999999999999999999999999          999999999999999988766655555


Q ss_pred             HHHcc
Q 010976          303 LYGLA  307 (496)
Q Consensus       303 ~~~~g  307 (496)
                      ...++
T Consensus       130 ~~~l~  134 (142)
T 2xcb_A          130 GAMLE  134 (142)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.69  E-value=4.9e-16  Score=148.55  Aligned_cols=159  Identities=14%  Similarity=0.059  Sum_probs=141.6

Q ss_pred             HhhccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010976          133 SRQRILTFAAKRYANAIERN----PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY  208 (496)
Q Consensus       133 ~~~g~~~~Ai~~~~~al~~~----P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~  208 (496)
                      ...|++++|+..|+++++..    |.++.+++.+|.++...|+              +++|+..|+++++++|++..+++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~   81 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGL--------------RALARNDFSQALAIRPDMPEVFN   81 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCCCCHHHHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHccc--------------HHHHHHHHHHHHHcCCCcHHHHH
Confidence            34689999999999999983    5678999999999999999              99999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh
Q 010976          209 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  288 (496)
Q Consensus       209 ~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l  288 (496)
                      ++|.++..    .|++++|+       .+|+++++++|.+..+++++|.++..+|++          ++|+..|++++++
T Consensus        82 ~la~~~~~----~~~~~~A~-------~~~~~al~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~a~~~  140 (275)
T 1xnf_A           82 YLGIYLTQ----AGNFDAAY-------EAFDSVLELDPTYNYAHLNRGIALYYGGRD----------KLAQDDLLAFYQD  140 (275)
T ss_dssp             HHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCTHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHH
T ss_pred             HHHHHHHH----ccCHHHHH-------HHHHHHHhcCccccHHHHHHHHHHHHhccH----------HHHHHHHHHHHHh
Confidence            99999999    99999999       899999999999999999999999999999          9999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          289 QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       289 ~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                      +|++......++.+ ...|+                   +..|..++.+++...|...
T Consensus       141 ~~~~~~~~~~~~~~-~~~~~-------------------~~~A~~~~~~~~~~~~~~~  178 (275)
T 1xnf_A          141 DPNDPFRSLWLYLA-EQKLD-------------------EKQAKEVLKQHFEKSDKEQ  178 (275)
T ss_dssp             CTTCHHHHHHHHHH-HHHHC-------------------HHHHHHHHHHHHHHSCCCS
T ss_pred             CCCChHHHHHHHHH-HHhcC-------------------HHHHHHHHHHHHhcCCcch
Confidence            99999777766655 44466                   6777777777777666554

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.69  E-value=2.2e-15  Score=148.56  Aligned_cols=150  Identities=12%  Similarity=0.037  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Q 010976          138 LTFAAKRYANAIE-RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD-AFYNWAIAIS  215 (496)
Q Consensus       138 ~~~Ai~~~~~al~-~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~-a~~~lg~~~~  215 (496)
                      +++|+..|++|++ ++|++..+|..+|.++...|+              +++|++.|+++++++|+++. +|.++|.++.
T Consensus        80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  145 (308)
T 2ond_A           80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMK--------------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR  145 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhccccCccHHHHHHHHHHH
Confidence            3999999999999 799999999999999999999              99999999999999999987 9999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHH
Q 010976          216 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE-LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR  294 (496)
Q Consensus       216 ~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~  294 (496)
                      .    .|++++|+       ..|+++++.+|.+..++...+.+... .|++          ++|+..|+++++++|+++.
T Consensus       146 ~----~~~~~~A~-------~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~  204 (308)
T 2ond_A          146 R----AEGIKSGR-------MIFKKAREDARTRHHVYVTAALMEYYCSKDK----------SVAFKIFELGLKKYGDIPE  204 (308)
T ss_dssp             H----HHCHHHHH-------HHHHHHHTSTTCCTHHHHHHHHHHHHTSCCH----------HHHHHHHHHHHHHHTTCHH
T ss_pred             H----hcCHHHHH-------HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCcHH
Confidence            9    99999998       89999999999998888877766543 6888          9999999999999999999


Q ss_pred             HHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhc
Q 010976          295 AIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL  341 (496)
Q Consensus       295 a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l  341 (496)
                      +|.++|.++..+|+                   +..|..+|++++..
T Consensus       205 ~~~~~~~~~~~~g~-------------------~~~A~~~~~~al~~  232 (308)
T 2ond_A          205 YVLAYIDYLSHLNE-------------------DNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHHHHHHHTTCC-------------------HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHCCC-------------------HHHHHHHHHHHHhc
Confidence            99999999999998                   78888999999885

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.68  E-value=1.2e-16  Score=140.91  Aligned_cols=124  Identities=15%  Similarity=0.081  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHHHHHcCC
Q 010976          156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-------LHD-----AFYNWAIAISDRAKMRGR  223 (496)
Q Consensus       156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~-------~~~-----a~~~lg~~~~~~~~~~g~  223 (496)
                      +..+.++|..++..|+              |++|+..|++||+++|+       +..     +|+|+|.++..    +|+
T Consensus        11 a~~~~~~G~~l~~~g~--------------~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~----Lgr   72 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGE--------------YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG----LRS   72 (159)
T ss_dssp             HHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH----TTC
T ss_pred             HHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH----CCC
Confidence            4678899999999999              99999999999999999       555     99999999999    999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCHHHH----HHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHH
Q 010976          224 TKEAEELWKQATKNYEKAVQLNWNSPQAL----NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL  299 (496)
Q Consensus       224 ~~eA~~~~~~A~~~~~~Al~l~P~~~~a~----~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~l  299 (496)
                      +++|+.+|++|++.|.++++++|++..+|    +++|.+|..+|++          ++|+.+|++|++++|++..+...+
T Consensus        73 ~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~----------eEAl~~y~kAlel~p~d~~~~~~~  142 (159)
T 2hr2_A           73 FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRG----------AEAMPEFKKVVEMIEERKGETPGK  142 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred             HHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCH----------HHHHHHHHHHHhcCCCcHHHHHHH
Confidence            99999999999999999999999999999    9999999999999          999999999999999987766666


Q ss_pred             HHHHHHcc
Q 010976          300 GTVLYGLA  307 (496)
Q Consensus       300 g~~~~~~g  307 (496)
                      ..+.....
T Consensus       143 ~~~~~~~~  150 (159)
T 2hr2_A          143 ERMMEVAI  150 (159)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            65544433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.68  E-value=2.5e-15  Score=134.08  Aligned_cols=152  Identities=14%  Similarity=0.187  Sum_probs=139.6

Q ss_pred             hhhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 010976          108 HQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS  177 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~  177 (496)
                      +...++++.|+..+.+++...          +..+...|++++|+..|+++++.+|++..++..+|.++...|+      
T Consensus        18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~------   91 (186)
T 3as5_A           18 HAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQK------   91 (186)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC------
T ss_pred             HHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC------
Confidence            345688888888888877654          3446678999999999999999999999999999999999999      


Q ss_pred             CCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976          178 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL  257 (496)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  257 (496)
                              +++|++.|++++.++|++..+++.+|.++..    .|++++|+       ..|+++++.+|.++.++.++|.
T Consensus        92 --------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~la~  152 (186)
T 3as5_A           92 --------YDLAVPLLIKVAEANPINFNVRFRLGVALDN----LGRFDEAI-------DSFKIALGLRPNEGKVHRAIAF  152 (186)
T ss_dssp             --------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH----cCcHHHHH-------HHHHHHHhcCccchHHHHHHHH
Confidence                    9999999999999999999999999999999    99999999       8889999999999999999999


Q ss_pred             HHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHH
Q 010976          258 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR  294 (496)
Q Consensus       258 ~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~  294 (496)
                      ++...|++          ++|+..|+++++++|++..
T Consensus       153 ~~~~~~~~----------~~A~~~~~~~~~~~~~~~~  179 (186)
T 3as5_A          153 SYEQMGRH----------EEALPHFKKANELDEGASV  179 (186)
T ss_dssp             HHHHTTCH----------HHHHHHHHHHHHHHHCCCG
T ss_pred             HHHHcCCH----------HHHHHHHHHHHHcCCCchh
Confidence            99999999          9999999999999988653

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.68  E-value=9.4e-16  Score=129.84  Aligned_cols=119  Identities=16%  Similarity=0.019  Sum_probs=112.6

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010976          153 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK  232 (496)
Q Consensus       153 P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~  232 (496)
                      |..+..++.+|..++..|+              +++|+..|+++++++|+++.+|+++|.++..    +|++++|+    
T Consensus         1 p~~a~~~~~~g~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~----   58 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSD--------------WPNAVKAYTEMIKRAPEDARGYSNRAAALAK----LMSFPEAI----   58 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH----
T ss_pred             CchHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hcCHHHHH----
Confidence            4467889999999999999              9999999999999999999999999999999    99999999    


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHc
Q 010976          233 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ------FDFHRAIYNLGTVLYGL  306 (496)
Q Consensus       233 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~------P~~~~a~~~lg~~~~~~  306 (496)
                         ..|+++++++|+++.+++++|.++..+|++          ++|+..|+++++++      |++..++..++.+...+
T Consensus        59 ---~~~~~al~~~p~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           59 ---ADCNKAIEKDPNFVRAYIRKATAQIAVKEY----------ASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             ---HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             ---HHHHHHHHhCCCcHHHHHHHHHHHHHHhCH----------HHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence               899999999999999999999999999999          99999999999999      99999999998887543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.68  E-value=3.2e-16  Score=152.30  Aligned_cols=190  Identities=16%  Similarity=0.167  Sum_probs=158.4

Q ss_pred             hhhhhcHHHHHHHHHHhhcc--------c----------hhhhHhhccHHHHHHHHHHHHHh--------CCCCHHHHHH
Q 010976          108 HQLAEQNNAAMELINSVTGV--------D----------EEGRSRQRILTFAAKRYANAIER--------NPEDYDALYN  161 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~--------~----------~~~~~~~g~~~~Ai~~~~~al~~--------~P~~~~a~~~  161 (496)
                      +...|+++.|+..+.+++..        .          +..+...|++++|+.+|++++.+        .|....++.+
T Consensus        37 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  116 (311)
T 3nf1_A           37 YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNN  116 (311)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            34567888888888887763        1          34456789999999999999988        4667889999


Q ss_pred             HHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010976          162 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC--------PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ  233 (496)
Q Consensus       162 lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~  233 (496)
                      +|.+|...|+              +++|+.+|++++++.        |....+++++|.++..    .|++++|++.|++
T Consensus       117 l~~~~~~~g~--------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~  178 (311)
T 3nf1_A          117 LAVLYGKRGK--------------YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN----QGKYEEVEYYYQR  178 (311)
T ss_dssp             HHHHHHTTTC--------------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHH
T ss_pred             HHHHHHHcCc--------------HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHH
Confidence            9999999999              999999999999984        6677889999999999    9999999966666


Q ss_pred             HHHHHHHHHhc-CCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh------------------------
Q 010976          234 ATKNYEKAVQL-NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL------------------------  288 (496)
Q Consensus       234 A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l------------------------  288 (496)
                      ++..+++...- +|....+++++|.+|..+|++          ++|+..|++++++                        
T Consensus       179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (311)
T 3nf1_A          179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKF----------KQAETLYKEILTRAHEREFGSVDDENKPIWMHAEERE  248 (311)
T ss_dssp             HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Confidence            66655443211 566788999999999999999          9999999999974                        


Q ss_pred             -------------------------cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 010976          289 -------------------------QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP  343 (496)
Q Consensus       289 -------------------------~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p  343 (496)
                                               +|....+++++|.+|..+|+                   +.+|..+|++++++.|
T Consensus       249 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          249 ECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK-------------------FEAAETLEEAAMRSRK  309 (311)
T ss_dssp             HC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTC-------------------HHHHHHHHHHHHHHHC
T ss_pred             HhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHHHhh
Confidence                                     46677889999999999998                   8899999999998876


Q ss_pred             c
Q 010976          344 S  344 (496)
Q Consensus       344 ~  344 (496)
                      .
T Consensus       310 ~  310 (311)
T 3nf1_A          310 Q  310 (311)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.67  E-value=6.7e-16  Score=147.48  Aligned_cols=167  Identities=16%  Similarity=0.176  Sum_probs=142.1

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh-
Q 010976          129 EEGRSRQRILTFAAKRYANAIER--------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-  199 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-  199 (496)
                      +..+...|++++|+.+|++++++        +|....++.++|.+|..+|+              +++|+.+|++++.+ 
T Consensus        50 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~  115 (283)
T 3edt_B           50 ALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK--------------YKEAEPLCKRALEIR  115 (283)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC--------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHHH
Confidence            44566789999999999999988        46678899999999999999              99999999999999 


Q ss_pred             -------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHccCcchHHHh
Q 010976          200 -------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL-NWNSPQALNNWGLALQELSAIVPAREK  271 (496)
Q Consensus       200 -------~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~~A~~~  271 (496)
                             +|....+++++|.++..    +|++++|+..|++++..+++...- +|....++.++|.++..+|++      
T Consensus       116 ~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~------  185 (283)
T 3edt_B          116 EKVLGKFHPDVAKQLNNLALLCQN----QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY------  185 (283)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH------
T ss_pred             HHHcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH------
Confidence                   57778999999999999    999999997666666665544322 566788999999999999999      


Q ss_pred             hhhHHHHHHHHHHHHHh-------------------------------------------------cCCCHHHHHHHHHH
Q 010976          272 QTIVRTAISKFRAAIQL-------------------------------------------------QFDFHRAIYNLGTV  302 (496)
Q Consensus       272 ~~~~~~Ai~~~~~Al~l-------------------------------------------------~P~~~~a~~~lg~~  302 (496)
                          ++|+..|++++++                                                 .|....++.++|.+
T Consensus       186 ----~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~  261 (283)
T 3edt_B          186 ----QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGAL  261 (283)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence                9999999999986                                                 24456788888999


Q ss_pred             HHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 010976          303 LYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK  342 (496)
Q Consensus       303 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~  342 (496)
                      |..+|+                   +.+|..+|++++++.
T Consensus       262 ~~~~g~-------------------~~~A~~~~~~al~~~  282 (283)
T 3edt_B          262 YRRQGK-------------------LEAAHTLEDCASRNR  282 (283)
T ss_dssp             HHHTTC-------------------HHHHHHHHHHHHTTC
T ss_pred             HHHcCC-------------------HHHHHHHHHHHHHhh
Confidence            988888                   888888888888753

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.67  E-value=7.1e-17  Score=141.96  Aligned_cols=123  Identities=12%  Similarity=0.162  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      +-.+...|++++.++|++..+++++|.++..    .|++++|+       ..|++++.++|+++.+|+++|.++..+|++
T Consensus         3 ~~~~~~~~~~al~~~p~~~~~~~~~g~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~   71 (148)
T 2vgx_A            3 LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQ----SGXYEDAH-------XVFQALCVLDHYDSRFFLGLGACRQAMGQY   71 (148)
T ss_dssp             ---CCCSHHHHTTCCHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             ccchhhhHHHHHcCCHhhHHHHHHHHHHHHH----cCChHHHH-------HHHHHHHHcCcccHHHHHHHHHHHHHHhhH
Confidence            3444567899999999999999999999999    99999999       899999999999999999999999999999


Q ss_pred             chHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcH
Q 010976          266 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  345 (496)
Q Consensus       266 ~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~  345 (496)
                                ++|+.+|+++++++|+++.+++++|.+|..+|+                   +.+|..+|+++++++|++
T Consensus        72 ----------~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~-------------------~~~A~~~~~~al~~~p~~  122 (148)
T 2vgx_A           72 ----------DLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE-------------------LAEAESGLFLAQELIANX  122 (148)
T ss_dssp             ----------HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHTTC
T ss_pred             ----------HHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHCcCC
Confidence                      999999999999999999999999999999999                   899999999999998886


Q ss_pred             HHH
Q 010976          346 SVY  348 (496)
Q Consensus       346 ~~y  348 (496)
                      +.+
T Consensus       123 ~~~  125 (148)
T 2vgx_A          123 PEF  125 (148)
T ss_dssp             GGG
T ss_pred             Ccc
Confidence            643

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.67  E-value=6.3e-15  Score=145.17  Aligned_cols=186  Identities=9%  Similarity=0.017  Sum_probs=161.2

Q ss_pred             hhcHHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--CCCCCCCCCcchhhhHHH
Q 010976          111 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA--DNVSLDSTSPSKDALLEE  188 (496)
Q Consensus       111 ~~~~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~--~~~~~~~~~~~~~~~~~~  188 (496)
                      ..++..++..+...+...       ...++|+.++.++|.++|++..+|+.++.++..++  +              +++
T Consensus        29 ~~~y~~~~~~~~a~~~~~-------e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~--------------~~e   87 (306)
T 3dra_A           29 DEDYKQIMGLLLALMKAE-------EYSERALHITELGINELASHYTIWIYRFNILKNLPNRN--------------LYD   87 (306)
T ss_dssp             CHHHHHHHHHHHHHHHTT-------CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSC--------------HHH
T ss_pred             CHHHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccccc--------------HHH
Confidence            455666666666554333       33468999999999999999999999999999999  7              999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          189 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR---GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       189 A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~---g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      +++++++++.++|++..+|+.++.++.......   +++++++       ..+.++++.+|.+..+|++++.++..+|.+
T Consensus        88 eL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL-------~~~~~~l~~~pkny~aW~~R~~vl~~l~~~  160 (306)
T 3dra_A           88 ELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREF-------DILEAMLSSDPKNHHVWSYRKWLVDTFDLH  160 (306)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999993221116   6777777       899999999999999999999999999998


Q ss_pred             chHHHhhhhHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 010976          266 VPAREKQTIVR--TAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP  343 (496)
Q Consensus       266 ~~A~~~~~~~~--~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p  343 (496)
                                +  ++++.+.++++.+|.|..+|++.+.++..+++.             .....+.++..++.+++.++|
T Consensus       161 ----------~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~-------------~~~~~~~eEl~~~~~aI~~~p  217 (306)
T 3dra_A          161 ----------NDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHL-------------ATDNTIDEELNYVKDKIVKCP  217 (306)
T ss_dssp             ----------TCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGG-------------CCHHHHHHHHHHHHHHHHHCS
T ss_pred             ----------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccc-------------chhhhHHHHHHHHHHHHHhCC
Confidence                      7  999999999999999999999999999988751             134468999999999999999


Q ss_pred             cHHH
Q 010976          344 SYSV  347 (496)
Q Consensus       344 ~~~~  347 (496)
                      .+..
T Consensus       218 ~n~S  221 (306)
T 3dra_A          218 QNPS  221 (306)
T ss_dssp             SCHH
T ss_pred             CCcc
Confidence            9984

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.67  E-value=3.7e-15  Score=146.85  Aligned_cols=182  Identities=8%  Similarity=-0.024  Sum_probs=160.3

Q ss_pred             hcHHHHHHHHHHhhc-cc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhcCCCCCCCCC
Q 010976          112 EQNNAAMELINSVTG-VD----------EEGRSRQRILTFAAKRYANAIERNPEDYD-ALYNWALVLQESADNVSLDSTS  179 (496)
Q Consensus       112 ~~~~~A~~~~~~~l~-~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~-a~~~lg~~~~~~~~~~~~~~~~  179 (496)
                      +..++|...+.+++. ..          +..+...|++++|+..|+++++++|.++. +|.++|.++...|+        
T Consensus        78 ~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--------  149 (308)
T 2ond_A           78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG--------  149 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC--------
T ss_pred             cchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcC--------
Confidence            335899999999998 44          22344579999999999999999999987 99999999999999        


Q ss_pred             cchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010976          180 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL  259 (496)
Q Consensus       180 ~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  259 (496)
                            +++|+..|+++++++|.+..+|...+.+...   ..|++++|+       ..|+++++.+|+++.+|.++|.++
T Consensus       150 ------~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~---~~~~~~~A~-------~~~~~al~~~p~~~~~~~~~~~~~  213 (308)
T 2ond_A          150 ------IKSGRMIFKKAREDARTRHHVYVTAALMEYY---CSKDKSVAF-------KIFELGLKKYGDIPEYVLAYIDYL  213 (308)
T ss_dssp             ------HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH---TSCCHHHHH-------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---HcCCHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHH
Confidence                  9999999999999999998888877666432   169999999       899999999999999999999999


Q ss_pred             HHccCcchHHHhhhhHHHHHHHHHHHHHh---cC-CCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHH
Q 010976          260 QELSAIVPAREKQTIVRTAISKFRAAIQL---QF-DFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYI  335 (496)
Q Consensus       260 ~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l---~P-~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~  335 (496)
                      ..+|++          ++|+..|+++++.   +| +...+|.+++..+...|+                   +..+..++
T Consensus       214 ~~~g~~----------~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~-------------------~~~a~~~~  264 (308)
T 2ond_A          214 SHLNED----------NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD-------------------LASILKVE  264 (308)
T ss_dssp             HTTCCH----------HHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC-------------------HHHHHHHH
T ss_pred             HHCCCH----------HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC-------------------HHHHHHHH
Confidence            999999          9999999999995   56 478899999999999998                   78888999


Q ss_pred             HHHHhcCCcHH
Q 010976          336 AAAHALKPSYS  346 (496)
Q Consensus       336 ~~a~~l~p~~~  346 (496)
                      .+++++.|+..
T Consensus       265 ~~a~~~~p~~~  275 (308)
T 2ond_A          265 KRRFTAFREEY  275 (308)
T ss_dssp             HHHHHHTTTTT
T ss_pred             HHHHHHccccc
Confidence            99999999754

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.66  E-value=1.3e-15  Score=163.20  Aligned_cols=154  Identities=15%  Similarity=0.085  Sum_probs=129.3

Q ss_pred             hcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcc
Q 010976          112 EQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPS  181 (496)
Q Consensus       112 ~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~  181 (496)
                      +++++|+..+.+++...          +..+..+|++++|+..|+++++++|++..+++++|.+|..+|+          
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------   72 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQR----------   72 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTC----------
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC----------
Confidence            45566666666666544          3446678999999999999999999999999999999999999          


Q ss_pred             hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010976          182 KDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE  261 (496)
Q Consensus       182 ~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~  261 (496)
                          +++|+++|+++++++|++..+++++|.+|..    +|++++|+       ..|+++++++|++..++.++|.++..
T Consensus        73 ----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~l~~~~~~  137 (568)
T 2vsy_A           73 ----HAEAAVLLQQASDAAPEHPGIALWLGHALED----AGQAEAAA-------AAYTRAHQLLPEEPYITAQLLNWRRR  137 (568)
T ss_dssp             ----HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                9999999999999999999999999999999    99999999       89999999999999999999999999


Q ss_pred             c---cCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010976          262 L---SAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG  300 (496)
Q Consensus       262 ~---g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg  300 (496)
                      +   |++          ++|+..|+++++.+|++...+..++
T Consensus       138 ~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          138 LCDWRAL----------DVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             TTCCTTH----------HHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             hhccccH----------HHHHHHHHHHHhcCCcccChHHHhC
Confidence            9   887          9999999999999999877776665

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.66  E-value=7.6e-16  Score=138.41  Aligned_cols=132  Identities=14%  Similarity=0.057  Sum_probs=119.6

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  211 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  211 (496)
                      +...|++++|+..|+++++.+|+++.+|+.+|.+|...|+              +++|+.+|+++++++|++..+++++|
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~la   85 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND--------------YSNSLLAYRQALQLRGENAELYAALA   85 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            3456899999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HH-HHHHHHHcCCH--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh
Q 010976          212 IA-ISDRAKMRGRT--KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  288 (496)
Q Consensus       212 ~~-~~~~~~~~g~~--~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l  288 (496)
                      .+ +..    .|++  ++|+       ..|+++++++|++..+++++|.++..+|++          ++|+..|++++++
T Consensus        86 ~~l~~~----~~~~~~~~A~-------~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~  144 (177)
T 2e2e_A           86 TVLYYQ----ASQHMTAQTR-------AMIDKALALDSNEITALMLLASDAFMQANY----------AQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHH----TTTCCCHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHT
T ss_pred             HHHHHh----cCCcchHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHcccH----------HHHHHHHHHHHhh
Confidence            99 778    9998  9999       899999999999999999999999999999          9999999999999


Q ss_pred             cCCCHHHHHH
Q 010976          289 QFDFHRAIYN  298 (496)
Q Consensus       289 ~P~~~~a~~~  298 (496)
                      +|++......
T Consensus       145 ~p~~~~~~~~  154 (177)
T 2e2e_A          145 NSPRINRTQL  154 (177)
T ss_dssp             CCTTSCHHHH
T ss_pred             CCCCccHHHH
Confidence            9998654433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.65  E-value=2.6e-15  Score=133.45  Aligned_cols=121  Identities=17%  Similarity=0.138  Sum_probs=112.8

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010976          152 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW  231 (496)
Q Consensus       152 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~  231 (496)
                      ++.++.+++.+|.+++..|+              +++|+.+|+++++++|++..+|+++|.+|..    +|++++|+   
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~---   65 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKE--------------YSKAIDLYTQALSIAPANPIYLSNRAAAYSA----SGQHEKAA---   65 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH---
T ss_pred             hhhhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH----ccCHHHHH---
Confidence            45568899999999999999              9999999999999999999999999999999    99999999   


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976          232 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  307 (496)
Q Consensus       232 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g  307 (496)
                          ..|+++++++|+++.+|+++|.+|..+|++          ++|+.+|+++++++|++..++++++.......
T Consensus        66 ----~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~  127 (164)
T 3sz7_A           66 ----EDAELATVVDPKYSKAWSRLGLARFDMADY----------KGAKEAYEKGIEAEGNGGSDAMKRGLETTKRK  127 (164)
T ss_dssp             ----HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHhCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence                899999999999999999999999999999          99999999999999999998888777655443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.64  E-value=1.4e-14  Score=121.77  Aligned_cols=134  Identities=31%  Similarity=0.430  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010976          157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK  236 (496)
Q Consensus       157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~  236 (496)
                      .+++.+|.++...|+              +++|+..|+++++.+|++..+++.+|.++..    .|++++|+       .
T Consensus         2 ~~~~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~-------~   56 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAI-------E   56 (136)
T ss_dssp             HHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHH-------H
T ss_pred             cHHHHHHHHHHHcCc--------------HHHHHHHHHHHHHcCCcchhHHHHHHHHHHH----hcCHHHHH-------H
Confidence            578999999999999              9999999999999999999999999999999    99999999       7


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCC
Q 010976          237 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGT  316 (496)
Q Consensus       237 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~  316 (496)
                      .|++++..+|.+..+++++|.++...|++          ++|+..|+++++..|++..+++.+|.++...|+        
T Consensus        57 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------  118 (136)
T 2fo7_A           57 YYQKALELDPRSAEAWYNLGNAYYKQGDY----------DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--------  118 (136)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--------
T ss_pred             HHHHHHHHCCCchHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc--------
Confidence            88888899999999999999999999999          999999999999999999999999999999998        


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976          317 VNPREVSPNELYSQSAIYIAAAHALKPS  344 (496)
Q Consensus       317 ~~~~~~~~~~~~~~A~~~~~~a~~l~p~  344 (496)
                                 +..|..+|.+++.++|.
T Consensus       119 -----------~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A          119 -----------YDEAIEYYQKALELDPR  135 (136)
T ss_dssp             -----------HHHHHHHHHHHHHHSTT
T ss_pred             -----------HHHHHHHHHHHHccCCC
Confidence                       88999999999998875

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.63  E-value=5.3e-14  Score=135.33  Aligned_cols=182  Identities=15%  Similarity=0.144  Sum_probs=146.6

Q ss_pred             hhhhcHHHHHHHHHHhhccc--------hhhhHh----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCC
Q 010976          109 QLAEQNNAAMELINSVTGVD--------EEGRSR----QRILTFAAKRYANAIERNPEDYDALYNWALVLQE----SADN  172 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~l~~~--------~~~~~~----~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~----~~~~  172 (496)
                      ...+++++|+.++.+++...        +..+..    .+++++|+.+|+++++.+  ++.+++++|.+|..    .++ 
T Consensus        17 ~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~-   93 (273)
T 1ouv_A           17 YKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQN-   93 (273)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC-
T ss_pred             HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccC-
Confidence            34567888888888877643        334556    789999999999999885  88999999999999    888 


Q ss_pred             CCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 010976          173 VSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL  252 (496)
Q Consensus       173 ~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~  252 (496)
                                   +++|+..|++++++  +++.+++++|.+|.......+++++|+       .+|+++++.+  ++.++
T Consensus        94 -------------~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~-------~~~~~a~~~~--~~~a~  149 (273)
T 1ouv_A           94 -------------TNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAV-------EYFTKACDLN--DGDGC  149 (273)
T ss_dssp             -------------HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH-------HHHHHHHHTT--CHHHH
T ss_pred             -------------HHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHH-------HHHHHHHhcC--cHHHH
Confidence                         99999999999987  488999999988864111157888888       6777777765  78899


Q ss_pred             HHHHHHHHH----ccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cchhHHhccCCCCCCCCCc
Q 010976          253 NNWGLALQE----LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG----LAEDTLRTGGTVNPREVSP  324 (496)
Q Consensus       253 ~~lg~~l~~----~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~----~g~~~~a~~~~~~~~~~~~  324 (496)
                      +++|.+|..    .+++          ++|+.+|+++++.  +++.+++++|.+|..    .++                
T Consensus       150 ~~lg~~~~~~~~~~~~~----------~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~----------------  201 (273)
T 1ouv_A          150 TILGSLYDAGRGTPKDL----------KKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKN----------------  201 (273)
T ss_dssp             HHHHHHHHHTSSSCCCH----------HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCC----------------
T ss_pred             HHHHHHHHcCCCCCCCH----------HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCcc----------------
Confidence            999999998    8888          9999999999887  468899999999988    777                


Q ss_pred             HHHHHHHHHHHHHHHhcCCcHHHH
Q 010976          325 NELYSQSAIYIAAAHALKPSYSVY  348 (496)
Q Consensus       325 ~~~~~~A~~~~~~a~~l~p~~~~y  348 (496)
                         +.+|..+|+++++.+|....+
T Consensus       202 ---~~~A~~~~~~a~~~~~~~a~~  222 (273)
T 1ouv_A          202 ---FKEALARYSKACELENGGGCF  222 (273)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHH
T ss_pred             ---HHHHHHHHHHHHhCCCHHHHH
Confidence               888899999998887744433

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.63  E-value=2.6e-14  Score=142.49  Aligned_cols=193  Identities=9%  Similarity=0.017  Sum_probs=164.9

Q ss_pred             hhhcHHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CCCCCCCCCcchhhhHHH
Q 010976          110 LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA-DNVSLDSTSPSKDALLEE  188 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~-~~~~~~~~~~~~~~~~~~  188 (496)
                      ...++..++..+...+...       +..++|+..+.++|.++|++..+|+.++.++..++ .              +++
T Consensus        49 y~~~y~~~~~~~r~~~~~~-------e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~--------------l~e  107 (349)
T 3q7a_A           49 YSEEYKDAMDYFRAIAAKE-------EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKS--------------LED  107 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHTT-------CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC--------------HHH
T ss_pred             eCHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhh--------------HHH
Confidence            4566777777776665443       44578999999999999999999999999999999 6              999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcc
Q 010976          189 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR-G-RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIV  266 (496)
Q Consensus       189 A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~-g-~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~  266 (496)
                      +++++++++..+|++..+|+.++.++..    + + ++++++       ..+.++++.+|.|..+|+.++.++..+|.++
T Consensus       108 EL~~~~~~L~~nPKny~aW~hR~wlL~~----l~~~~~~~EL-------~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~  176 (349)
T 3q7a_A          108 ELRLMNEFAVQNLKSYQVWHHRLLLLDR----ISPQDPVSEI-------EYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG  176 (349)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHHH----HCCSCCHHHH-------HHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHH----hcCCChHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999999998    7 7 777777       8999999999999999999999999999881


Q ss_pred             hHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          267 PAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       267 ~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                      .+  ....+.++++++.++++.+|.|..+|++++.++..+++.            ......+.++..++.+++.++|++.
T Consensus       177 ~~--~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~------------~~~~~~~~eELe~~~~aI~~~P~n~  242 (349)
T 3q7a_A          177 RI--SEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGA------------ETSSRSLQDELIYILKSIHLIPHNV  242 (349)
T ss_dssp             CC--CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTC------------CCCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             cc--chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccc------------ccchHHHHHHHHHHHHHHHhCCCCH
Confidence            00  011223999999999999999999999999999988751            1234568999999999999999998


Q ss_pred             HH
Q 010976          347 VY  348 (496)
Q Consensus       347 ~y  348 (496)
                      ..
T Consensus       243 Sa  244 (349)
T 3q7a_A          243 SA  244 (349)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.63  E-value=2.2e-14  Score=138.02  Aligned_cols=181  Identities=14%  Similarity=0.137  Sum_probs=156.0

Q ss_pred             hhcHHHHHHHHHHhhccc--------hhhhHh----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCCCC
Q 010976          111 AEQNNAAMELINSVTGVD--------EEGRSR----QRILTFAAKRYANAIERNPEDYDALYNWALVLQE----SADNVS  174 (496)
Q Consensus       111 ~~~~~~A~~~~~~~l~~~--------~~~~~~----~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~----~~~~~~  174 (496)
                      .+++++|+.++.+++...        +..+..    .+++++|+.+|+++++.+  ++.+++++|.+|..    .++   
T Consensus        55 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~---  129 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRD---  129 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCC---
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccC---
Confidence            688999999999988765        334556    899999999999999984  89999999999999    899   


Q ss_pred             CCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010976          175 LDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN  254 (496)
Q Consensus       175 ~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~  254 (496)
                                 +++|+.+|+++++++  +..+++++|.+|.......+++++|+       .+|+++++.  +++.++++
T Consensus       130 -----------~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~-------~~~~~a~~~--~~~~a~~~  187 (273)
T 1ouv_A          130 -----------FKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKAL-------ASYDKACDL--KDSPGCFN  187 (273)
T ss_dssp             -----------HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH-------HHHHHHHHT--TCHHHHHH
T ss_pred             -----------HHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHH-------HHHHHHHHC--CCHHHHHH
Confidence                       999999999999986  78899999999874111157888888       777777776  47899999


Q ss_pred             HHHHHHH----ccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cchhHHhccCCCCCCCCCcHH
Q 010976          255 WGLALQE----LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG----LAEDTLRTGGTVNPREVSPNE  326 (496)
Q Consensus       255 lg~~l~~----~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~----~g~~~~a~~~~~~~~~~~~~~  326 (496)
                      +|.+|..    .+++          ++|+.+|+++++.+|  +.+++++|.+|..    .++                  
T Consensus       188 lg~~~~~g~~~~~~~----------~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~------------------  237 (273)
T 1ouv_A          188 AGNMYHHGEGATKNF----------KEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRN------------------  237 (273)
T ss_dssp             HHHHHHHTCSSCCCH----------HHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCC------------------
T ss_pred             HHHHHHcCCCCCccH----------HHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccC------------------
Confidence            9999999    8998          999999999999866  8999999999998    776                  


Q ss_pred             HHHHHHHHHHHHHhcCCcHHHHH
Q 010976          327 LYSQSAIYIAAAHALKPSYSVYS  349 (496)
Q Consensus       327 ~~~~A~~~~~~a~~l~p~~~~y~  349 (496)
                       +.+|..+|++++++.|....+.
T Consensus       238 -~~~A~~~~~~a~~~~~~~a~~~  259 (273)
T 1ouv_A          238 -EKQAIENFKKGCKLGAKGACDI  259 (273)
T ss_dssp             -STTHHHHHHHHHHHTCHHHHHH
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHH
Confidence             7789999999999999876544

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.63  E-value=3.3e-16  Score=163.59  Aligned_cols=139  Identities=14%  Similarity=0.117  Sum_probs=130.3

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC-----------
Q 010976          135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-----------  203 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~-----------  203 (496)
                      .+++++|+..|+.++..+|+.+.+++++|.+++.+|+              |++|+..|++|++++|++           
T Consensus       247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~--------------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~  312 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGK--------------YMQAVIQYGKIVSWLEMEYGLSEKESKAS  312 (457)
T ss_dssp             EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHTTCCSCCHHHHHHH
T ss_pred             hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCC--------------HHHHHHHHHHHHHHhcccccCChHHHHHH
Confidence            4678889999999999999999999999999999999              999999999999999998           


Q ss_pred             ----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHH
Q 010976          204 ----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI  279 (496)
Q Consensus       204 ----~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai  279 (496)
                          ..+|+++|.+|..    +|++++|+       .+|+++++++|+++.+|+++|.+|..+|++          ++|+
T Consensus       313 ~~~~~~~~~nla~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~a~~~~g~a~~~~g~~----------~~A~  371 (457)
T 1kt0_A          313 ESFLLAAFLNLAMCYLK----LREYTKAV-------ECCDKALGLDSANEKGLYRRGEAQLLMNEF----------ESAK  371 (457)
T ss_dssp             HHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHH
T ss_pred             HHHHHHHHHHHHHHHHH----hcCHHHHH-------HHHHHHHhcCCccHHHHHHHHHHHHHccCH----------HHHH
Confidence                7999999999999    99999999       899999999999999999999999999999          9999


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          280 SKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       280 ~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                      ..|++|++++|++..++.+++.++..+++
T Consensus       372 ~~~~~al~l~P~~~~a~~~l~~~~~~~~~  400 (457)
T 1kt0_A          372 GDFEKVLEVNPQNKAARLQISMCQKKAKE  400 (457)
T ss_dssp             HHHHHHHTTC----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999997

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.62  E-value=4.6e-15  Score=125.40  Aligned_cols=122  Identities=19%  Similarity=0.159  Sum_probs=116.5

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010976          152 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW  231 (496)
Q Consensus       152 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~  231 (496)
                      .|.+..+++.+|.++...|+              +++|+..|++++.++|++..+++++|.++..    .|++++|+   
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~---   70 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGD--------------YPQAMKHYTEAIKRNPKDAKLYSNRAACYTK----LLEFQLAL---   70 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTC--------------SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT----TTCHHHHH---
T ss_pred             CcccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----hccHHHHH---
Confidence            46778999999999999999              9999999999999999999999999999999    99999999   


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          232 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       232 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                          ..|+++++++|++..+++++|.++..+|++          ++|+..|+++++++|++..++.+++.++..+|+
T Consensus        71 ----~~~~~a~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           71 ----KDCEECIQLEPTFIKGYTRKAAALEAMKDY----------TKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             ----HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             ----HHHHHHHHhCCCchHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence                889999999999999999999999999999          999999999999999999999999999988763

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.62  E-value=7.7e-16  Score=156.64  Aligned_cols=189  Identities=16%  Similarity=0.135  Sum_probs=155.0

Q ss_pred             hhhhhcHHHHHHHHHHhhccc--------------hhhhHhhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH
Q 010976          108 HQLAEQNNAAMELINSVTGVD--------------EEGRSRQRILTFAAKRYANAIER------NPEDYDALYNWALVLQ  167 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~--------------~~~~~~~g~~~~Ai~~~~~al~~------~P~~~~a~~~lg~~~~  167 (496)
                      +...|+++.|+..+.+++...              +..+...|++++|+.+|++++++      .|....++..+|.+|.
T Consensus        58 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  137 (411)
T 4a1s_A           58 LCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK  137 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence            456788999999998888754              33456679999999999999998      6778899999999999


Q ss_pred             HhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHcCC----------HHHHHHHH
Q 010976          168 ESADNVSLDSTSPSKDALLEEACKKYDEATRL------CPTLHDAFYNWAIAISDRAKMRGR----------TKEAEELW  231 (496)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~~~~~~~~~g~----------~~eA~~~~  231 (496)
                      .+|+              +++|+.+|++++.+      .|....+++++|.+|..    +|+          +.+|...|
T Consensus       138 ~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~a~~~~  199 (411)
T 4a1s_A          138 VMGR--------------FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA----KGKHLGQRNPGKFGDDVKEAL  199 (411)
T ss_dssp             HTTC--------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHHHHHHSTTCCCHHHHHHH
T ss_pred             HCCC--------------HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH----cCcccccccchhhhhhhhHHH
Confidence            9999              99999999999999      66678899999999999    999          55555556


Q ss_pred             HHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHH------HHHHH
Q 010976          232 KQATKNYEKAVQLN------WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR------AIYNL  299 (496)
Q Consensus       232 ~~A~~~~~~Al~l~------P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~------a~~~l  299 (496)
                      ++|+..|++++++.      +....+++++|.++..+|++          ++|+.+|++++++.+....      +++++
T Consensus       200 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  269 (411)
T 4a1s_A          200 TRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDF----------QAAIEHHQERLRIAREFGDRAAERRANSNL  269 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            66666666666542      44567999999999999999          9999999999998765433      89999


Q ss_pred             HHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 010976          300 GTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP  343 (496)
Q Consensus       300 g~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p  343 (496)
                      |.+|..+|+                   +.+|..+|++++.+.+
T Consensus       270 a~~~~~~g~-------------------~~~A~~~~~~al~~~~  294 (411)
T 4a1s_A          270 GNSHIFLGQ-------------------FEDAAEHYKRTLALAV  294 (411)
T ss_dssp             HHHHHTTTC-------------------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCcC-------------------HHHHHHHHHHHHHHHH
Confidence            999999998                   5666666666666554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.62  E-value=9.7e-16  Score=133.13  Aligned_cols=121  Identities=12%  Similarity=0.147  Sum_probs=110.4

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHH
Q 010976          190 CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAR  269 (496)
Q Consensus       190 ~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~  269 (496)
                      -..|++++.++|++..+++++|.++..    .|++++|+       ..|++++.++|+++.+|+++|.++..+|++    
T Consensus         4 ~~~l~~al~~~p~~~~~~~~~a~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----   68 (142)
T 2xcb_A            4 GGTLAMLRGLSEDTLEQLYALGFNQYQ----AGKWDDAQ-------KIFQALCMLDHYDARYFLGLGACRQSLGLY----   68 (142)
T ss_dssp             -----CCTTCCHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----
T ss_pred             chhHHHHHcCCHHHHHHHHHHHHHHHH----HccHHHHH-------HHHHHHHHhCCccHHHHHHHHHHHHHHhhH----
Confidence            357888999999999999999999999    99999999       899999999999999999999999999999    


Q ss_pred             HhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHH
Q 010976          270 EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS  349 (496)
Q Consensus       270 ~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~  349 (496)
                            ++|+.+|+++++++|+++.+++++|.+|..+|+                   +..|..+|+++++++|+++.+.
T Consensus        69 ------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-------------------~~~A~~~~~~al~~~p~~~~~~  123 (142)
T 2xcb_A           69 ------EQALQSYSYGALMDINEPRFPFHAAECHLQLGD-------------------LDGAESGFYSARALAAAQPAHE  123 (142)
T ss_dssp             ------HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHHTCGGGH
T ss_pred             ------HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCCCCcchH
Confidence                  999999999999999999999999999999999                   8999999999999999776444


Q ss_pred             H
Q 010976          350 S  350 (496)
Q Consensus       350 ~  350 (496)
                      .
T Consensus       124 ~  124 (142)
T 2xcb_A          124 A  124 (142)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.62  E-value=1.8e-14  Score=132.91  Aligned_cols=145  Identities=16%  Similarity=0.187  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010976          156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT  235 (496)
Q Consensus       156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~  235 (496)
                      ...++++|.++...|+              +++|+..|++++  +| ++.+++++|.+|..    +|++++|+       
T Consensus         6 ~~~~~~~g~~~~~~~~--------------~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~----~g~~~~A~-------   57 (213)
T 1hh8_A            6 AISLWNEGVLAADKKD--------------WKGALDAFSAVQ--DP-HSRICFNIGCMYTI----LKNMTEAE-------   57 (213)
T ss_dssp             HHHHHHHHHHHHHTTC--------------HHHHHHHHHTSS--SC-CHHHHHHHHHHHHH----TTCHHHHH-------
T ss_pred             HHHHHHHHHHHHHhCC--------------HHHHHHHHHHHc--CC-ChHHHHHHHHHHHH----cCCHHHHH-------
Confidence            3457899999999999              999999999995  44 78999999999999    99999999       


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH----------------HHHHHH
Q 010976          236 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH----------------RAIYNL  299 (496)
Q Consensus       236 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~----------------~a~~~l  299 (496)
                      ..|+++++++|+++.+++++|.++..+|++          ++|+..|++++++.|++.                .+++++
T Consensus        58 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (213)
T 1hh8_A           58 KAFTRSINRDKHLAVAYFQRGMLYYQTEKY----------DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI  127 (213)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHH
T ss_pred             HHHHHHHHhCccchHHHHHHHHHHHHcccH----------HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHH
Confidence            899999999999999999999999999999          999999999999888776                999999


Q ss_pred             HHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH--HHHHHHHhhhc
Q 010976          300 GTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS--VYSSALRLVRS  357 (496)
Q Consensus       300 g~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~--~y~~al~~~~~  357 (496)
                      |.++..+|+                   +..|..+|+++++++|...  .+..++..+..
T Consensus       128 ~~~~~~~g~-------------------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~  168 (213)
T 1hh8_A          128 AFMYAKKEE-------------------WKKAEEQLALATSMKSEPRHSKIDKAMECVWK  168 (213)
T ss_dssp             HHHHHHTTC-------------------HHHHHHHHHHHHTTCCSGGGGHHHHHHHHHHT
T ss_pred             HHHHHHccC-------------------HHHHHHHHHHHHHcCcccccchHHHHHHHHHh
Confidence            999999999                   8999999999999999764  55666655543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.62  E-value=2.9e-14  Score=119.77  Aligned_cols=128  Identities=28%  Similarity=0.349  Sum_probs=121.3

Q ss_pred             hhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010976          130 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN  209 (496)
Q Consensus       130 ~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~  209 (496)
                      ..+...|++++|+..|+++++.+|++..+++.+|.++...|+              +++|+..|++++..+|.+..++++
T Consensus         9 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~   74 (136)
T 2fo7_A            9 NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPRSAEAWYN   74 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHHCCCchHHHHH
Confidence            345667999999999999999999999999999999999999              999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc
Q 010976          210 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ  289 (496)
Q Consensus       210 lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~  289 (496)
                      +|.++..    .|++++|+       ..|++++..+|.+..+++.+|.++...|++          ++|+..|++++.++
T Consensus        75 l~~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~  133 (136)
T 2fo7_A           75 LGNAYYK----QGDYDEAI-------EYYQKALELDPRSAEAWYNLGNAYYKQGDY----------DEAIEYYQKALELD  133 (136)
T ss_dssp             HHHHHHT----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHHHS
T ss_pred             HHHHHHH----hcCHHHHH-------HHHHHHHHhCCCChHHHHHHHHHHHHHccH----------HHHHHHHHHHHccC
Confidence            9999999    99999999       788889999999999999999999999999          99999999999999


Q ss_pred             CCC
Q 010976          290 FDF  292 (496)
Q Consensus       290 P~~  292 (496)
                      |++
T Consensus       134 ~~~  136 (136)
T 2fo7_A          134 PRS  136 (136)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            863

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.61  E-value=1.3e-15  Score=145.52  Aligned_cols=163  Identities=21%  Similarity=0.238  Sum_probs=141.7

Q ss_pred             hhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh------
Q 010976          134 RQRILTFAAKRYANAIER--------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL------  199 (496)
Q Consensus       134 ~~g~~~~Ai~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l------  199 (496)
                      ..|++++|+.+|++++++        +|....++..+|.+|...|+              +++|+.+|++++.+      
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~   78 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK--------------YKEAAHLLNDALAIREKTLG   78 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHccc--------------HHHHHHHHHHHHHHHHHHcC
Confidence            346677777777777763        36678899999999999999              99999999999988      


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHccCcchHHHhhhhHH
Q 010976          200 --CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL-NWNSPQALNNWGLALQELSAIVPAREKQTIVR  276 (496)
Q Consensus       200 --~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~  276 (496)
                        +|....+++++|.++..    +|++++|++.|++|+..+++.... +|....+++++|.++..+|++          +
T Consensus        79 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~  144 (283)
T 3edt_B           79 KDHPAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA----------E  144 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH----------H
T ss_pred             CcchHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCH----------H
Confidence              46678899999999999    999999998888888777766544 367789999999999999999          9


Q ss_pred             HHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 010976          277 TAISKFRAAIQL--------QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP  343 (496)
Q Consensus       277 ~Ai~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p  343 (496)
                      +|+..|++++++        +|....++.++|.++..+|+                   +..|..+|++++.+.+
T Consensus       145 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~~l~~~~  200 (283)
T 3edt_B          145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK-------------------YQDAETLYKEILTRAH  200 (283)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC-------------------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHHH
Confidence            999999999999        77788999999999999999                   8899999999887643

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.61  E-value=4e-15  Score=130.86  Aligned_cols=119  Identities=17%  Similarity=0.222  Sum_probs=99.7

Q ss_pred             CcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010976          179 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK---EAEELWKQATKNYEKAVQLNWNSPQALNNW  255 (496)
Q Consensus       179 ~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~---eA~~~~~~A~~~~~~Al~l~P~~~~a~~~l  255 (496)
                      ...+.+.|++|++.|+++++++|+++++|+++|.++..    +++++   +|++.+++|+..|++||+++|++..+|+++
T Consensus        11 ~~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~----l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~L   86 (158)
T 1zu2_A           11 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE----LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI   86 (158)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence            34567779999999999999999999999999999999    77664   677888999999999999999999999999


Q ss_pred             HHHHHHccCcchH-HHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 010976          256 GLALQELSAIVPA-REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT  301 (496)
Q Consensus       256 g~~l~~~g~~~~A-~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~  301 (496)
                      |.+|..+|++..- ....|++++|+.+|++|++++|++...+.++..
T Consensus        87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~  133 (158)
T 1zu2_A           87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            9999998732110 223355699999999999999998765555443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.61  E-value=1.6e-14  Score=141.22  Aligned_cols=141  Identities=11%  Similarity=0.008  Sum_probs=135.2

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 010976          151 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL  230 (496)
Q Consensus       151 ~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~  230 (496)
                      ..|++.+.++.+|..+...|+              +++|+..|+++++++|++..+++++|.++..    +|++++|+  
T Consensus       112 ~lp~~~~~~~~~a~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~la~~~~~----~g~~~~A~--  171 (287)
T 3qou_A          112 VLPREEELXAQQAMQLMQESN--------------YTDALPLLXDAWQLSNQNGEIGLLLAETLIA----LNRSEDAE--  171 (287)
T ss_dssp             HSCCHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH----TTCHHHHH--
T ss_pred             HcCCchhhHHHHHHHHHhCCC--------------HHHHHHHHHHHHHhCCcchhHHHHHHHHHHH----CCCHHHHH--
Confidence            349999999999999999999              9999999999999999999999999999999    99999999  


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhH
Q 010976          231 WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT  310 (496)
Q Consensus       231 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~  310 (496)
                           ..|++++..+|+....+.+.+..+...++.          ++|+..|+++++++|++..+++++|.+|...|+  
T Consensus       172 -----~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~----------~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~--  234 (287)
T 3qou_A          172 -----AVLXTIPLQDQDTRYQGLVAQIELLXQAAD----------TPEIQQLQQQVAENPEDAALATQLALQLHQVGR--  234 (287)
T ss_dssp             -----HHHTTSCGGGCSHHHHHHHHHHHHHHHHTS----------CHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--
T ss_pred             -----HHHHhCchhhcchHHHHHHHHHHHHhhccc----------CccHHHHHHHHhcCCccHHHHHHHHHHHHHccc--
Confidence                 899999999998888888888889999999          999999999999999999999999999999999  


Q ss_pred             HhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcH
Q 010976          311 LRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  345 (496)
Q Consensus       311 ~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~  345 (496)
                                       +.+|...|.++++.+|++
T Consensus       235 -----------------~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          235 -----------------NEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             -----------------HHHHHHHHHHHHHHCTTG
T ss_pred             -----------------HHHHHHHHHHHHhccccc
Confidence                             899999999999999988

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.61  E-value=1.2e-14  Score=121.86  Aligned_cols=124  Identities=25%  Similarity=0.255  Sum_probs=117.5

Q ss_pred             HhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 010976          150 ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE  229 (496)
Q Consensus       150 ~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~  229 (496)
                      ..+|.+..+++.+|.++...|+              +++|+..|++++.++|++..+++++|.++..    .|++++|+ 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~-   66 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVEN--------------FEAAVHFYGKAIELNPANAVYFCNRAAAYSK----LGNYAGAV-   66 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-
T ss_pred             hcchhhhHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hhchHHHH-
Confidence            3456678899999999999999              9999999999999999999999999999999    99999999 


Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          230 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       230 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                            ..|++++.++|+++.+++++|.++..+|++          ++|+..|+++++++|++..++.++|.++..+|+
T Consensus        67 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           67 ------QDCERAICIDPAYSKAYGRMGLALSSLNKH----------VEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             ------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             ------HHHHHHHhcCccCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence                  888999999999999999999999999999          999999999999999999999999999998886

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.61  E-value=3.7e-14  Score=151.76  Aligned_cols=186  Identities=10%  Similarity=0.013  Sum_probs=155.5

Q ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 010976          137 ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISD  216 (496)
Q Consensus       137 ~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~  216 (496)
                      ..++|+..+.++|.++|++..+|+.++.++..+++..    ........+++++++++++++.+|++..+|++++.++..
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~----~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~  119 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEK----SPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  119 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhccccc----chhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3468899999999999999999999999999988610    001123348999999999999999999999999999999


Q ss_pred             HHHHcC--CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CcchHHHhhhhHHHHHHHHHHHHHhcCCCH
Q 010976          217 RAKMRG--RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS-AIVPAREKQTIVRTAISKFRAAIQLQFDFH  293 (496)
Q Consensus       217 ~~~~~g--~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g-~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~  293 (496)
                          .+  ++++++       +.+.++++++|.+..+|++++.++..+| .+          +++++++.++++.+|.+.
T Consensus       120 ----l~~~~~~~el-------~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~----------~~el~~~~~~I~~~p~n~  178 (567)
T 1dce_A          120 ----LPEPNWAREL-------ELCARFLEADERNFHCWDYRRFVAAQAAVAP----------AEELAFTDSLITRNFSNY  178 (567)
T ss_dssp             ----CSSCCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTCCCH----------HHHHHHHHTTTTTTCCCH
T ss_pred             ----cccccHHHHH-------HHHHHHHhhccccccHHHHHHHHHHHcCCCh----------HHHHHHHHHHHHHCCCCc
Confidence                99  668888       8999999999999999999999999999 77          999999999999999999


Q ss_pred             HHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Q 010976          294 RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL  352 (496)
Q Consensus       294 ~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al  352 (496)
                      .+|+++|.++..+++...+.     .........+.++.+++.+|+.++|++.....-+
T Consensus       179 saW~~r~~ll~~l~~~~~~~-----~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~  232 (567)
T 1dce_A          179 SSWHYRSCLLPQLHPQPDSG-----PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH  232 (567)
T ss_dssp             HHHHHHHHHHHHHSCCCCSS-----SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHH
T ss_pred             cHHHHHHHHHHhhccccccc-----ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHH
Confidence            99999999999875421000     0001124568999999999999999988443333

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.61  E-value=1.2e-13  Score=137.07  Aligned_cols=199  Identities=10%  Similarity=0.067  Sum_probs=159.2

Q ss_pred             HHHHHHHHHhhccchh----------hhHhhcc----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCC
Q 010976          115 NAAMELINSVTGVDEE----------GRSRQRI----------LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS  174 (496)
Q Consensus       115 ~~A~~~~~~~l~~~~~----------~~~~~g~----------~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~  174 (496)
                      ++|+.++..++..++.          .....+.          +++++.++..++..+|.+..+|+.++.++..+++   
T Consensus        47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~---  123 (331)
T 3dss_A           47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE---  123 (331)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSS---
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCc---
Confidence            3577777777776621          1111222          7899999999999999999999999999999983   


Q ss_pred             CCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 010976          175 LDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGR-TKEAEELWKQATKNYEKAVQLNWNSPQALN  253 (496)
Q Consensus       175 ~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~-~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~  253 (496)
                               ..+++++.++.++++++|.|..+|++++.++..    .|. +++++       +++.++++.+|.|..+|+
T Consensus       124 ---------~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~----l~~~~~eel-------~~~~~~I~~~p~N~SAW~  183 (331)
T 3dss_A          124 ---------PNWARELELCARFLEADERNFHCWDYRRFVAAQ----AAVAPAEEL-------AFTDSLITRNFSNYSSWH  183 (331)
T ss_dssp             ---------CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCHHHHH-------HHHHHHHHHCSCCHHHHH
T ss_pred             ---------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCcCHHHHH-------HHHHHHHHHCCCCHHHHH
Confidence                     018999999999999999999999999999999    998 57777       899999999999999999


Q ss_pred             HHHHHHHHccCcchH----HHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-chhHHhccCCCCCCCCC--cHH
Q 010976          254 NWGLALQELSAIVPA----REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL-AEDTLRTGGTVNPREVS--PNE  326 (496)
Q Consensus       254 ~lg~~l~~~g~~~~A----~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~-g~~~~a~~~~~~~~~~~--~~~  326 (496)
                      +++.++..++....+    ....+.++++++++.+++.++|++..+|+.+..++... |..           ..+  ...
T Consensus       184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~-----------~~~~~~~~  252 (331)
T 3dss_A          184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRC-----------ELSVEKST  252 (331)
T ss_dssp             HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGG-----------GCCHHHHH
T ss_pred             HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcc-----------ccchHHHH
Confidence            999999988442111    11225569999999999999999999998666655544 321           111  124


Q ss_pred             HHHHHHHHHHHHHhcCCcHHH
Q 010976          327 LYSQSAIYIAAAHALKPSYSV  347 (496)
Q Consensus       327 ~~~~A~~~~~~a~~l~p~~~~  347 (496)
                      .+.+++.++.++++++|++..
T Consensus       253 ~l~~el~~~~elle~~pd~~w  273 (331)
T 3dss_A          253 VLQSELESCKELQELEPENKW  273 (331)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHhhCcccch
Confidence            689999999999999999863

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.61  E-value=4.2e-14  Score=124.39  Aligned_cols=130  Identities=15%  Similarity=0.103  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010976          156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT  235 (496)
Q Consensus       156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~  235 (496)
                      +..++.+|.++...|+              +++|+..|++++.++|++..+++++|.++..    .|++++|+       
T Consensus        13 ~~~~~~~a~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~----~~~~~~A~-------   67 (166)
T 1a17_A           13 AEELKTQANDYFKAKD--------------YENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYAL-------   67 (166)
T ss_dssp             HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH-------
T ss_pred             HHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHH-------
Confidence            5778999999999999              9999999999999999999999999999999    99999999       


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH--HHHcchhHHhc
Q 010976          236 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV--LYGLAEDTLRT  313 (496)
Q Consensus       236 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~--~~~~g~~~~a~  313 (496)
                      ..|++++.++|.++.+++++|.++..+|++          ++|+..|+++++++|++..++..++.+  +...|+     
T Consensus        68 ~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~-----  132 (166)
T 1a17_A           68 GDATRAIELDKKYIKGYYRRAASNMALGKF----------RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA-----  132 (166)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-----
Confidence            899999999999999999999999999999          999999999999999999998666655  666676     


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHH
Q 010976          314 GGTVNPREVSPNELYSQSAIYIAAAH  339 (496)
Q Consensus       314 ~~~~~~~~~~~~~~~~~A~~~~~~a~  339 (496)
                                    +.+|..++.++.
T Consensus       133 --------------~~~A~~~~~~~~  144 (166)
T 1a17_A          133 --------------FERAIAGDEHKR  144 (166)
T ss_dssp             --------------HHHHHHHHHHHH
T ss_pred             --------------HHHHHHcccchH
Confidence                          677777766543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.61  E-value=3.3e-15  Score=145.89  Aligned_cols=200  Identities=16%  Similarity=0.147  Sum_probs=148.9

Q ss_pred             hhhhhcHHHHHHHHHHhhccc--------------hhhhHhhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH
Q 010976          108 HQLAEQNNAAMELINSVTGVD--------------EEGRSRQRILTFAAKRYANAIER------NPEDYDALYNWALVLQ  167 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~--------------~~~~~~~g~~~~Ai~~~~~al~~------~P~~~~a~~~lg~~~~  167 (496)
                      +...|++++|+..+.+++...              +..+...|++++|+..|++++.+      .|....++..+|.++.
T Consensus        15 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~   94 (338)
T 3ro2_A           15 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK   94 (338)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence            346788889999988887754              33456679999999999999988      4566789999999999


Q ss_pred             HhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHcCC-------------HHHHH
Q 010976          168 ESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGR-------------TKEAE  228 (496)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~~~~~g~-------------~~eA~  228 (496)
                      .+|+              +++|+..|++++.+.+..      ..+++++|.++..    .|+             ..++.
T Consensus        95 ~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~a~  156 (338)
T 3ro2_A           95 VLGN--------------FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDTGEFPEDVR  156 (338)
T ss_dssp             HTTC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHTSSSSSCC----CCHHHH
T ss_pred             HccC--------------HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH----cCcccccchhhhhhhhhhhHH
Confidence            9999              999999999999986643      4489999999999    999             44444


Q ss_pred             HHHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHccCcchH------------------------------HHhh
Q 010976          229 ELWKQATKNYEKAVQL------NWNSPQALNNWGLALQELSAIVPA------------------------------REKQ  272 (496)
Q Consensus       229 ~~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~l~~~g~~~~A------------------------------~~~~  272 (496)
                      +.|++|+..|++++.+      .+....++.++|.++...|++++|                              ....
T Consensus       157 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~  236 (338)
T 3ro2_A          157 NALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL  236 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc
Confidence            4444444555555543      344566888999999999998655                              1145


Q ss_pred             hhHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976          273 TIVRTAISKFRAAIQLQFDF------HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  344 (496)
Q Consensus       273 ~~~~~Ai~~~~~Al~l~P~~------~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~  344 (496)
                      |++++|+..|++++.+.+..      ..++.++|.++...|+                   +..|..++++++.+.+.
T Consensus       237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~a~~~~~~  295 (338)
T 3ro2_A          237 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD-------------------YEKAIDYHLKHLAIAQE  295 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC-------------------HHHHHHHHHHHHHHHHh
Confidence            66677777777777665544      5666777777777776                   67777777777766543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.60  E-value=2.7e-15  Score=151.47  Aligned_cols=189  Identities=17%  Similarity=0.179  Sum_probs=151.4

Q ss_pred             hhhhhcHHHHHHHHHHhhccc--------------hhhhHhhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH
Q 010976          108 HQLAEQNNAAMELINSVTGVD--------------EEGRSRQRILTFAAKRYANAIER------NPEDYDALYNWALVLQ  167 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~--------------~~~~~~~g~~~~Ai~~~~~al~~------~P~~~~a~~~lg~~~~  167 (496)
                      +...|++++|+..+.+++...              +..+...|++++|+.+|++++.+      .|....++..+|.++.
T Consensus        19 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~   98 (406)
T 3sf4_A           19 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK   98 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            456788899999988887764              23456679999999999999987      4556789999999999


Q ss_pred             HhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHcCC-------------HHHHH
Q 010976          168 ESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGR-------------TKEAE  228 (496)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~~~~~g~-------------~~eA~  228 (496)
                      .+|+              +++|+.+|++++.+.|..      ..+++++|.+|..    .|+             +.++.
T Consensus        99 ~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~~~~a~  160 (406)
T 3sf4_A           99 VLGN--------------FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDVGEFPEEVR  160 (406)
T ss_dssp             HTTC--------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHTCC-------CCCCHHHH
T ss_pred             HcCC--------------HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH----cCCcccccccchhhhhhhhHH
Confidence            9999              999999999999997653      5689999999999    999             44555


Q ss_pred             HHHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHH------HH
Q 010976          229 ELWKQATKNYEKAVQL------NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR------AI  296 (496)
Q Consensus       229 ~~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~------a~  296 (496)
                      ..|++|+..|++++.+      .|....+++++|.++..+|++          ++|+..|++++++.+....      ++
T Consensus       161 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~  230 (406)
T 3sf4_A          161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF----------RDAVIAHEQRLLIAKEFGDKAAERRAY  230 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBH----------HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            5555555666665554      345577899999999999999          9999999999998765543      89


Q ss_pred             HHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 010976          297 YNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP  343 (496)
Q Consensus       297 ~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p  343 (496)
                      +++|.++...|+                   +..|..+|.+++.+.+
T Consensus       231 ~~la~~~~~~g~-------------------~~~A~~~~~~al~~~~  258 (406)
T 3sf4_A          231 SNLGNAYIFLGE-------------------FETASEYYKKTLLLAR  258 (406)
T ss_dssp             HHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC-------------------hHHHHHHHHHHHHHHH
Confidence            999999999998                   5666666666665544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.60  E-value=3.2e-14  Score=140.08  Aligned_cols=208  Identities=9%  Similarity=0.000  Sum_probs=166.0

Q ss_pred             HHHHHHHHHhhccch----------hhhHhhc--cHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHh---cCCCCC
Q 010976          115 NAAMELINSVTGVDE----------EGRSRQR--ILTFAAKRYANAIERNPEDYDALYNWALVL----QES---ADNVSL  175 (496)
Q Consensus       115 ~~A~~~~~~~l~~~~----------~~~~~~g--~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~----~~~---~~~~~~  175 (496)
                      ++|+.++.+++..++          ......+  ++++++..+.++|..+|++..+|+.++.++    ..+   ++    
T Consensus        50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~----  125 (306)
T 3dra_A           50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD----  125 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC----
T ss_pred             HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC----
Confidence            567888888887772          2333456  999999999999999999999999999999    655   55    


Q ss_pred             CCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 010976          176 DSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK--EAEELWKQATKNYEKAVQLNWNSPQALN  253 (496)
Q Consensus       176 ~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~--eA~~~~~~A~~~~~~Al~l~P~~~~a~~  253 (496)
                                +++++++++++++.+|.+..+|++++.++..    .|+++  +++       +.+.++++.+|.|..+|+
T Consensus       126 ----------~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~----l~~~~~~~EL-------~~~~~~i~~d~~N~sAW~  184 (306)
T 3dra_A          126 ----------PYREFDILEAMLSSDPKNHHVWSYRKWLVDT----FDLHNDAKEL-------SFVDKVIDTDLKNNSAWS  184 (306)
T ss_dssp             ----------THHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCTTCHHHH-------HHHHHHHHHCTTCHHHHH
T ss_pred             ----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcccChHHHH-------HHHHHHHHhCCCCHHHHH
Confidence                      9999999999999999999999999999999    99887  777       899999999999999999


Q ss_pred             HHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCC------CC-CCCCCcH-
Q 010976          254 NWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGT------VN-PREVSPN-  325 (496)
Q Consensus       254 ~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~------~~-~~~~~~~-  325 (496)
                      +++.++..+++.    .....++++++++.++|.++|+|..+|++++.++...|+........      +. ....++- 
T Consensus       185 ~R~~ll~~l~~~----~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a  260 (306)
T 3dra_A          185 HRFFLLFSKKHL----ATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFA  260 (306)
T ss_dssp             HHHHHHHSSGGG----CCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHH
T ss_pred             HHHHHHHhcccc----chhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHH
Confidence            999999998871    01112399999999999999999999999999999988743222100      00 0001111 


Q ss_pred             -----H------HHHHHHHHHHHHHh-cCCcHHHHHHH
Q 010976          326 -----E------LYSQSAIYIAAAHA-LKPSYSVYSSA  351 (496)
Q Consensus       326 -----~------~~~~A~~~~~~a~~-l~p~~~~y~~a  351 (496)
                           +      .+.+|..+|+.+.. +||-+..|..-
T Consensus       261 l~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~  298 (306)
T 3dra_A          261 LETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDY  298 (306)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHH
Confidence                 0      23568888888886 89988866653

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.60  E-value=8.8e-15  Score=128.70  Aligned_cols=114  Identities=24%  Similarity=0.285  Sum_probs=94.0

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976          133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  212 (496)
Q Consensus       133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  212 (496)
                      .+.+.|++|+..|+++++++|+++++|+++|.++..+++...    -....+.+++|+..|++||+++|++..+|+++|.
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~----g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~   88 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHS----ISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN   88 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSC----HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccch----hhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            456889999999999999999999999999999999987000    0001223569999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 010976          213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ  250 (496)
Q Consensus       213 ~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~  250 (496)
                      +|..+-+...++.++.+.|++|+.+|++|++++|++..
T Consensus        89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~  126 (158)
T 1zu2_A           89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH  126 (158)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence            99982222336788888899999999999999998753

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.60  E-value=1.8e-14  Score=132.82  Aligned_cols=133  Identities=11%  Similarity=0.104  Sum_probs=119.8

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010976          131 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  210 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~l  210 (496)
                      .+...|++++|+..|++++  +| ++.+++++|.+|..+|+              +++|+..|++++.++|++..+++++
T Consensus        15 ~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~l   77 (213)
T 1hh8_A           15 LAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKN--------------MTEAEKAFTRSINRDKHLAVAYFQR   77 (213)
T ss_dssp             HHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCccchHHHHHH
Confidence            3556899999999999995  44 78999999999999999              9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHccCcchHHHhhhh
Q 010976          211 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP----------------QALNNWGLALQELSAIVPAREKQTI  274 (496)
Q Consensus       211 g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~----------------~a~~~lg~~l~~~g~~~~A~~~~~~  274 (496)
                      |.+|..    +|++++|+       ..|++++++.|.+.                .+++++|.++..+|++         
T Consensus        78 g~~~~~----~~~~~~A~-------~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---------  137 (213)
T 1hh8_A           78 GMLYYQ----TEKYDLAI-------KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW---------  137 (213)
T ss_dssp             HHHHHH----TTCHHHHH-------HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH---------
T ss_pred             HHHHHH----cccHHHHH-------HHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH---------
Confidence            999999    99999999       78888888888766                9999999999999999         


Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 010976          275 VRTAISKFRAAIQLQFDFHRAIYNLGT  301 (496)
Q Consensus       275 ~~~Ai~~~~~Al~l~P~~~~a~~~lg~  301 (496)
                       ++|+..|+++++++|++.......+.
T Consensus       138 -~~A~~~~~~al~~~p~~~~~~~~~a~  163 (213)
T 1hh8_A          138 -KKAEEQLALATSMKSEPRHSKIDKAM  163 (213)
T ss_dssp             -HHHHHHHHHHHTTCCSGGGGHHHHHH
T ss_pred             -HHHHHHHHHHHHcCcccccchHHHHH
Confidence             99999999999999987544444433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.60  E-value=1.6e-14  Score=123.32  Aligned_cols=111  Identities=21%  Similarity=0.210  Sum_probs=96.1

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010976          154 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ  233 (496)
Q Consensus       154 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~  233 (496)
                      +.+.++.++|.+++..|+              |++|+.+|++|++++|+++.+|+++|.+|..    +|++++|+     
T Consensus         6 d~A~a~~~lG~~~~~~~~--------------~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~----~~~~~~A~-----   62 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKD--------------FEKAHVHYDKAIELDPSNITFYNNKAAVYFE----EKKFAECV-----   62 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-----
T ss_pred             HHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH----hhhHHHHH-----
Confidence            346788999999999999              9999999999999999999999999999999    99999999     


Q ss_pred             HHHHHHHHHhcCCCC-------HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010976          234 ATKNYEKAVQLNWNS-------PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG  300 (496)
Q Consensus       234 A~~~~~~Al~l~P~~-------~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg  300 (496)
                        ..|+++++++|++       ..+++++|.++..+|++          ++|+..|+++++..|+ +.....|.
T Consensus        63 --~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~----------~~A~~~~~kal~~~~~-~~~~~~l~  123 (127)
T 4gcn_A           63 --QFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDL----------SLAVQWFHRSLSEFRD-PELVKKVK  123 (127)
T ss_dssp             --HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             --HHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCcC-HHHHHHHH
Confidence              6777777777665       35788888888888888          9999999999999886 55444443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.60  E-value=8.7e-15  Score=144.28  Aligned_cols=182  Identities=13%  Similarity=0.114  Sum_probs=148.6

Q ss_pred             hhcHHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCCCCCCCCcchhh
Q 010976          111 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED------YDALYNWALVLQESADNVSLDSTSPSKDA  184 (496)
Q Consensus       111 ~~~~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~~------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~  184 (496)
                      .++++.|...|.++.    ..+..+|++++|+.+|.+++.+.+..      ..++.++|.+|..+|+             
T Consensus        29 ~~~~~~A~~~~~~a~----~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~-------------   91 (307)
T 2ifu_A           29 KPDYDSAASEYAKAA----VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQR-------------   91 (307)
T ss_dssp             SCCHHHHHHHHHHHH----HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------
T ss_pred             CCCHHHHHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-------------
Confidence            478999999998874    33566899999999999999987543      5689999999999999             


Q ss_pred             hHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010976          185 LLEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA  258 (496)
Q Consensus       185 ~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  258 (496)
                       +++|+.+|++++++.+.      ...++.++|.+|.     .|++++|++.|++|+..+... ........+++++|.+
T Consensus        92 -~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-----~g~~~~A~~~~~~Al~~~~~~-~~~~~~~~~~~~lg~~  164 (307)
T 2ifu_A           92 -MPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME-----PLDLSKAVHLYQQAAAVFENE-ERLRQAAELIGKASRL  164 (307)
T ss_dssp             -GGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHhC-CChhHHHHHHHHHHHH
Confidence             99999999999999543      2467889998883     499999996666666655431 0000126789999999


Q ss_pred             HHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHH
Q 010976          259 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF------HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSA  332 (496)
Q Consensus       259 l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~------~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~  332 (496)
                      |..+|++          ++|+.+|++++++.|++      ..++.++|.++..+|+                   +..|.
T Consensus       165 ~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~-------------------~~~A~  215 (307)
T 2ifu_A          165 LVRQQKF----------DEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD-------------------YVAAQ  215 (307)
T ss_dssp             HHHTTCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------------HHHHH
T ss_pred             HHHcCCH----------HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC-------------------HHHHH
Confidence            9999999          99999999999987654      3578899999999998                   89999


Q ss_pred             HHHHHHHhcCCcHH
Q 010976          333 IYIAAAHALKPSYS  346 (496)
Q Consensus       333 ~~~~~a~~l~p~~~  346 (496)
                      .+|++++ ++|.+.
T Consensus       216 ~~~~~al-~~p~~~  228 (307)
T 2ifu_A          216 KCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHHT-TSTTST
T ss_pred             HHHHHHh-CCCCCC
Confidence            9999999 999765

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.60  E-value=6.2e-15  Score=149.35  Aligned_cols=167  Identities=17%  Similarity=0.103  Sum_probs=141.4

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHh---CC---CCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 010976          129 EEGRSRQRILTFAAKRYANAIER---NP---EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT  202 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~---~P---~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~  202 (496)
                      +..+...|++++|+..|++++++   .+   ..+.+++++|.+|..+|+              +++|+.+|++|+++.+.
T Consensus       110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~--------------~~~A~~~~~~al~~~~~  175 (383)
T 3ulq_A          110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQ--------------TYFSMDYARQAYEIYKE  175 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHh
Confidence            34466789999999999999997   23   356899999999999999              99999999999999443


Q ss_pred             -------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhH
Q 010976          203 -------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV  275 (496)
Q Consensus       203 -------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~  275 (496)
                             ...+++++|.+|..    +|++++|++.|++|+..+.+. ...+....+++++|.+|..+|++          
T Consensus       176 ~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~y~~~g~~----------  240 (383)
T 3ulq_A          176 HEAYNIRLLQCHSLFATNFLD----LKQYEDAISHFQKAYSMAEAE-KQPQLMGRTLYNIGLCKNSQSQY----------  240 (383)
T ss_dssp             CSTTHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH----------
T ss_pred             CccchHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHCCCH----------
Confidence                   35689999999999    999999997776666665543 11222346899999999999999          


Q ss_pred             HHHHHHHHHHHH-----hc-CCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 010976          276 RTAISKFRAAIQ-----LQ-FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP  343 (496)
Q Consensus       276 ~~Ai~~~~~Al~-----l~-P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p  343 (496)
                      ++|+.+|++|++     .+ |....+++++|.++..+|+                   +..|..++++++.+.+
T Consensus       241 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------------------~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK-------------------IDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHHHHH
Confidence            999999999999     46 8889999999999999999                   8899999999988744

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.60  E-value=2.7e-15  Score=137.71  Aligned_cols=142  Identities=15%  Similarity=0.083  Sum_probs=127.1

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH--------
Q 010976          133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH--------  204 (496)
Q Consensus       133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~--------  204 (496)
                      ...|++++|.+.|.......+.....+..+|.+++..|+              |++|+..|++++.+.|+++        
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~   80 (198)
T 2fbn_A           15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNE--------------INEAIVKYKEALDFFIHTEEWDDQILL   80 (198)
T ss_dssp             -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHTTTTCTTCCCHHHH
T ss_pred             hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHhcccccchhhHH
Confidence            345777778888877777777788899999999999999              9999999999999999987        


Q ss_pred             --------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHH
Q 010976          205 --------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVR  276 (496)
Q Consensus       205 --------~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~  276 (496)
                              .+++++|.++..    +|++++|+       .+|+++++++|++..+++++|.+|..+|++          +
T Consensus        81 ~~~~~~~~~~~~~la~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~lg~~~~~~~~~----------~  139 (198)
T 2fbn_A           81 DKKKNIEISCNLNLATCYNK----NKDYPKAI-------DHASKVLKIDKNNVKALYKLGVANMYFGFL----------E  139 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHHTCH----------H
T ss_pred             HHHHHHHHHHHHHHHHHHHH----hcCHHHHH-------HHHHHHHHhCcccHHHHHHHHHHHHHcccH----------H
Confidence                    899999999999    99999999       899999999999999999999999999999          9


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010976          277 TAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED  309 (496)
Q Consensus       277 ~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~  309 (496)
                      +|+..|+++++++|++..++.+++.++..+++.
T Consensus       140 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  172 (198)
T 2fbn_A          140 EAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  172 (198)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998873

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.59  E-value=6e-14  Score=116.54  Aligned_cols=122  Identities=29%  Similarity=0.365  Sum_probs=112.9

Q ss_pred             hCCCC-HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 010976          151 RNPED-YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE  229 (496)
Q Consensus       151 ~~P~~-~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~  229 (496)
                      .+|.. ..+++.+|.++...|+              +++|++.|++++..+|++..+++.+|.++..    .|++++|+ 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~-   63 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPNNAEAWYNLGNAYYK----QGDYDEAI-   63 (125)
T ss_dssp             ----CHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-
T ss_pred             CCccccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH----hCCHHHHH-
Confidence            35655 7899999999999999              9999999999999999999999999999999    99999999 


Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976          230 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  307 (496)
Q Consensus       230 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g  307 (496)
                            ..|++++..+|.+..+++++|.++...|++          ++|+..|+++++++|++..++.++|.++...|
T Consensus        64 ------~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           64 ------EYYQKALELDPNNAEAWYNLGNAYYKQGDY----------DEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             ------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             ------HHHHHHHHhCCccHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence                  788888999999999999999999999999          99999999999999999999999999987654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.59  E-value=2.9e-14  Score=121.79  Aligned_cols=124  Identities=17%  Similarity=0.085  Sum_probs=113.4

Q ss_pred             HhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 010976          150 ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE  229 (496)
Q Consensus       150 ~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~  229 (496)
                      ..+|.++..++.+|.+++..|+              +++|+..|++++.++|++..+++++|.++..    +|++++|+ 
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~-   63 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRK--------------YPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQAL-   63 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-
T ss_pred             CCccccHHHHHHHHHHHHHhCc--------------HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH----hcCHHHHH-
Confidence            4578899999999999999999              9999999999999999999999999999999    99999999 


Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHH
Q 010976          230 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-----FHRAIYNLGTVLY  304 (496)
Q Consensus       230 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~-----~~~a~~~lg~~~~  304 (496)
                            ..|+++++++|+++.+++++|.++..+|++          ++|+..|+++++++|+     +..+...+..+..
T Consensus        64 ------~~~~~al~~~p~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~  127 (137)
T 3q49_B           64 ------ADCRRALELDGQSVKAHFFLGQCQLEMESY----------DEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK  127 (137)
T ss_dssp             ------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred             ------HHHHHHHHhCchhHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence                  899999999999999999999999999999          9999999999999998     7777777777765


Q ss_pred             Hcch
Q 010976          305 GLAE  308 (496)
Q Consensus       305 ~~g~  308 (496)
                      ....
T Consensus       128 ~~~~  131 (137)
T 3q49_B          128 KRWN  131 (137)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.59  E-value=1.1e-14  Score=147.60  Aligned_cols=174  Identities=13%  Similarity=0.082  Sum_probs=142.0

Q ss_pred             CChhhhhhcHHHHHHHHHHhhccc----------------hhhhHhhccHHHHHHHHHHHHHhCCC-------CHHHHHH
Q 010976          105 NTPHQLAEQNNAAMELINSVTGVD----------------EEGRSRQRILTFAAKRYANAIERNPE-------DYDALYN  161 (496)
Q Consensus       105 ~~~~~~~~~~~~A~~~~~~~l~~~----------------~~~~~~~g~~~~Ai~~~~~al~~~P~-------~~~a~~~  161 (496)
                      +..+...|+++.|+..+.+++...                +..+...|++++|+.+|++++++.+.       ...++.+
T Consensus       110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  189 (383)
T 3ulq_A          110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL  189 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            334456799999999999998762                34566789999999999999998543       3568999


Q ss_pred             HHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010976          162 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEELWKQAT  235 (496)
Q Consensus       162 lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~  235 (496)
                      +|.+|..+|+              +++|+.+|++++.+.+..      ..+++++|.+|..    +|++++|+..|++|+
T Consensus       190 lg~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al  251 (383)
T 3ulq_A          190 FATNFLDLKQ--------------YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS----QSQYEDAIPYFKRAI  251 (383)
T ss_dssp             HHHHHHHTTC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC--------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHH
Confidence            9999999999              999999999999985543      3589999999999    999999996665555


Q ss_pred             HHHHHHHhcC-CCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHcch
Q 010976          236 KNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ-----FDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       236 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~-----P~~~~a~~~lg~~~~~~g~  308 (496)
                      ..+++.  .+ |....+++++|.++..+|++          ++|+.+|++++++.     |.....+.++|.++...|+
T Consensus       252 ~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~  318 (383)
T 3ulq_A          252 AVFEES--NILPSLPQAYFLITQIHYKLGKI----------DKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD  318 (383)
T ss_dssp             HHHHHT--TCGGGHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred             HHHHhh--ccchhHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence            554432  34 77899999999999999999          99999999999883     4444446778888888875

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.59  E-value=1.7e-14  Score=139.97  Aligned_cols=168  Identities=20%  Similarity=0.237  Sum_probs=147.3

Q ss_pred             hhhHhhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh--
Q 010976          130 EGRSRQRILTFAAKRYANAIER--------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--  199 (496)
Q Consensus       130 ~~~~~~g~~~~Ai~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--  199 (496)
                      ..+...|++++|+.+|++++++        +|....++..+|.+|...|+              +++|+.+|++++.+  
T Consensus        35 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~~  100 (311)
T 3nf1_A           35 IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK--------------YKDAANLLNDALAIRE  100 (311)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHHH
Confidence            3466789999999999999995        67788999999999999999              99999999999998  


Q ss_pred             ------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHccCcchHHHhh
Q 010976          200 ------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL-NWNSPQALNNWGLALQELSAIVPAREKQ  272 (496)
Q Consensus       200 ------~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~~A~~~~  272 (496)
                            +|....+++++|.++..    .|++++|+..|++++..+++.... +|....+++++|.++...|++       
T Consensus       101 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-------  169 (311)
T 3nf1_A          101 KTLGKDHPAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY-------  169 (311)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH-------
T ss_pred             HHhCCCChHHHHHHHHHHHHHHH----cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH-------
Confidence                  46677899999999999    999999998777777776655332 355778999999999999999       


Q ss_pred             hhHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976          273 TIVRTAISKFRAAIQL--------QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  344 (496)
Q Consensus       273 ~~~~~Ai~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~  344 (496)
                         ++|+..|++++++        +|....+++++|.++..+|+                   +.+|..+|++++++.+.
T Consensus       170 ---~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~al~~~~~  227 (311)
T 3nf1_A          170 ---EEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK-------------------FKQAETLYKEILTRAHE  227 (311)
T ss_dssp             ---HHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC-------------------HHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHHHH
Confidence               9999999999998        77778899999999999999                   88999999999876443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.58  E-value=9e-15  Score=131.73  Aligned_cols=139  Identities=7%  Similarity=-0.055  Sum_probs=122.6

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010976          152 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW  231 (496)
Q Consensus       152 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~  231 (496)
                      ||...+.++.+|.++...|+              +++|+..|+++++++|++..+++++|.++..    .|++++|+   
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~la~~~~~----~g~~~~A~---   60 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGE--------------HAQALNVIQTLSDELQSRGDVKLAKADCLLE----TKQFELAQ---   60 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTC--------------HHHHHHHHHTSCHHHHTSHHHHHHHHHHHHH----TTCHHHHH---
T ss_pred             CCCHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----CCCHHHHH---
Confidence            45555678899999999999              9999999999999999999999999999999    99999999   


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhH
Q 010976          232 KQATKNYEKAVQLNWNSPQALNNWGLALQ-ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT  310 (496)
Q Consensus       232 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~  310 (496)
                          ..|++++..+| ++..+..++.+.. ..+..          .+|+..|+++++++|+++.+++++|.++...|+  
T Consensus        61 ----~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~--  123 (176)
T 2r5s_A           61 ----ELLATIPLEYQ-DNSYKSLIAKLELHQQAAE----------SPELKRLEQELAANPDNFELACELAVQYNQVGR--  123 (176)
T ss_dssp             ----HHHTTCCGGGC-CHHHHHHHHHHHHHHHHTS----------CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--
T ss_pred             ----HHHHHhhhccC-ChHHHHHHHHHHHHhhccc----------chHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc--
Confidence                89999999999 8887777765533 33444          568999999999999999999999999999999  


Q ss_pred             HhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcH
Q 010976          311 LRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  345 (496)
Q Consensus       311 ~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~  345 (496)
                                       +.+|..+|+++++++|+.
T Consensus       124 -----------------~~~A~~~~~~~l~~~p~~  141 (176)
T 2r5s_A          124 -----------------DEEALELLWNILKVNLGA  141 (176)
T ss_dssp             -----------------HHHHHHHHHHHHTTCTTT
T ss_pred             -----------------HHHHHHHHHHHHHhCccc
Confidence                             899999999999999875

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.58  E-value=3e-13  Score=134.08  Aligned_cols=184  Identities=11%  Similarity=0.035  Sum_probs=152.7

Q ss_pred             hccHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976          135 QRILT-FAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA  213 (496)
Q Consensus       135 ~g~~~-~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  213 (496)
                      .|+++ +|+.++.++|.++|++..+|+.++.++..++....    .......+++++.+++.++..+|.+..+|+.++.+
T Consensus        42 ~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~----~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl  117 (331)
T 3dss_A           42 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKS----PEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL  117 (331)
T ss_dssp             TTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSC----HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhccccc----chhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34444 79999999999999999999999999988775100    00122347899999999999999999999999999


Q ss_pred             HHHHHHHcCC--HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-cchHHHhhhhHHHHHHHHHHHHHhcC
Q 010976          214 ISDRAKMRGR--TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA-IVPAREKQTIVRTAISKFRAAIQLQF  290 (496)
Q Consensus       214 ~~~~~~~~g~--~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~-~~~A~~~~~~~~~Ai~~~~~Al~l~P  290 (496)
                      +..    +++  +++++       .++.++++++|.|..+|++.+.++...|. +          +++++++.++++.+|
T Consensus       118 L~~----l~~~~~~~EL-------~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~----------~eel~~~~~~I~~~p  176 (331)
T 3dss_A          118 LSR----LPEPNWAREL-------ELCARFLEADERNFHCWDYRRFVAAQAAVAP----------AEELAFTDSLITRNF  176 (331)
T ss_dssp             HHH----CSSCCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHCS
T ss_pred             Hhc----cCcccHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHhCcCH----------HHHHHHHHHHHHHCC
Confidence            998    884  67777       89999999999999999999999999998 5          899999999999999


Q ss_pred             CCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHH
Q 010976          291 DFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVY  348 (496)
Q Consensus       291 ~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y  348 (496)
                      .|..+|++++.++..+......     .+....+...+.++..++.+++.++|++...
T Consensus       177 ~N~SAW~~R~~ll~~l~~~~~~-----~~~~~~~~~~~~eEle~~~~ai~~~P~d~Sa  229 (331)
T 3dss_A          177 SNYSSWHYRSCLLPQLHPQPDS-----GPQGRLPENVLLKELELVQNAFFTDPNDQSA  229 (331)
T ss_dssp             CCHHHHHHHHHHHHHHSCCC-----------CCCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             CCHHHHHHHHHHHHHhhhcccc-----ccccccchHHHHHHHHHHHHHHHhCCCCHHH
Confidence            9999999999999888541100     0011123457999999999999999999943

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.58  E-value=1.3e-14  Score=146.48  Aligned_cols=189  Identities=13%  Similarity=0.090  Sum_probs=152.8

Q ss_pred             hhhhhhcHHHHHHHHHHhhccc----------------hhhhHhhcc--------------------HHHHHHHHHHHHH
Q 010976          107 PHQLAEQNNAAMELINSVTGVD----------------EEGRSRQRI--------------------LTFAAKRYANAIE  150 (496)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~l~~~----------------~~~~~~~g~--------------------~~~Ai~~~~~al~  150 (496)
                      .+...|+++.|+..+.+++...                +..+...|+                    +++|+..|++++.
T Consensus        96 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~  175 (406)
T 3sf4_A           96 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLS  175 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            4456788999998888877654                234556788                    9999999999998


Q ss_pred             h------CCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHH
Q 010976          151 R------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH------DAFYNWAIAISDRA  218 (496)
Q Consensus       151 ~------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~------~a~~~lg~~~~~~~  218 (496)
                      +      .|....++.++|.+|..+|+              +++|+.+|++++++.+...      .+++++|.+|..  
T Consensus       176 ~~~~~~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~--  239 (406)
T 3sf4_A          176 LVTALGDRAAQGRAFGNLGNTHYLLGN--------------FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF--  239 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTB--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--
T ss_pred             HHHhccCcHHHHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH--
Confidence            7      34556789999999999999              9999999999999966543      389999999999  


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC------
Q 010976          219 KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF------  292 (496)
Q Consensus       219 ~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~------  292 (496)
                        +|++++|+..|++|+..+... ...+....+++++|.++...|++          ++|+..|++++++.+..      
T Consensus       240 --~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~~  306 (406)
T 3sf4_A          240 --LGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDY----------EKAIDYHLKHLAIAQELNDRIGE  306 (406)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             --cCChHHHHHHHHHHHHHHHhC-cCchHHHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHHHHHhcCCcHHH
Confidence              999999995555554444321 00011277899999999999999          99999999999986554      


Q ss_pred             HHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 010976          293 HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP  343 (496)
Q Consensus       293 ~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p  343 (496)
                      ..++.++|.+|..+|+                   +..|..+|++++++.+
T Consensus       307 ~~~~~~la~~~~~~g~-------------------~~~A~~~~~~al~~~~  338 (406)
T 3sf4_A          307 GRACWSLGNAYTALGN-------------------HDQAMHFAEKHLEISR  338 (406)
T ss_dssp             HHHHHHHHHHHHHHTC-------------------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHHH
Confidence            7799999999999999                   8899999999888744

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.57  E-value=2.1e-14  Score=140.27  Aligned_cols=164  Identities=15%  Similarity=0.048  Sum_probs=135.9

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC--
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDYD------ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL--  203 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~~------a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~--  203 (496)
                      +...|++++|+..|++++...+..+.      .+..+|.++...++              +++|+.+|++++.+.+..  
T Consensus        85 ~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~Ai~~~~~al~~~~~~~~  150 (293)
T 3u3w_A           85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD--------------YEYCILELKKLLNQQLTGID  150 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSC--------------HHHHHHHHHHHHHTCCCCSC
T ss_pred             HHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccC--------------HHHHHHHHHHHHHHhccccc
Confidence            45679999999999999998887765      33458888888888              999999999999975442  


Q ss_pred             ----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHH
Q 010976          204 ----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI  279 (496)
Q Consensus       204 ----~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai  279 (496)
                          ..+++++|.+|..    +|++++|+..|++|+..+++.-...+....+++|+|.+|..+|++          ++|+
T Consensus       151 ~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y----------~~A~  216 (293)
T 3u3w_A          151 VYQNLYIENAIANIYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY----------EESL  216 (293)
T ss_dssp             TTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH----------HHHH
T ss_pred             HHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH----------HHHH
Confidence                3479999999999    999999998888888776553233344567899999999999999          9999


Q ss_pred             HHHHHHHHhcCCC------HHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhc
Q 010976          280 SKFRAAIQLQFDF------HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL  341 (496)
Q Consensus       280 ~~~~~Al~l~P~~------~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l  341 (496)
                      .+|++++++.+..      +.+++++|.+|..+|+.                  +.+|..+|++|+.+
T Consensus       217 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~------------------~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYE------------------EAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCC------------------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCc------------------HHHHHHHHHHHHHH
Confidence            9999999986544      78999999999999941                  57888888887764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.57  E-value=2.4e-14  Score=126.83  Aligned_cols=119  Identities=17%  Similarity=0.060  Sum_probs=111.2

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHH
Q 010976          155 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL------------------CPTLHDAFYNWAIAISD  216 (496)
Q Consensus       155 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l------------------~P~~~~a~~~lg~~~~~  216 (496)
                      .+..+..+|..++..|+              |++|+..|++++.+                  +|.+..+|+++|.+|..
T Consensus        10 ~a~~~~~~G~~~~~~~~--------------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~   75 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKD--------------YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN   75 (162)
T ss_dssp             HHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35778999999999999              99999999999999                  77788999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH-HH
Q 010976          217 RAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH-RA  295 (496)
Q Consensus       217 ~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~-~a  295 (496)
                          +|++++|+       ..|+++++++|+++.+|+++|.+|..+|++          ++|+..|+++++++|++. .+
T Consensus        76 ----~~~~~~A~-------~~~~~al~~~p~~~~a~~~~g~~~~~~g~~----------~~A~~~~~~al~l~p~~~~~~  134 (162)
T 3rkv_A           76 ----IGDLHEAE-------ETSSEVLKREETNEKALFRRAKARIAAWKL----------DEAEEDLKLLLRNHPAAASVV  134 (162)
T ss_dssp             ----HTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCGGGHHHH
T ss_pred             ----cCcHHHHH-------HHHHHHHhcCCcchHHHHHHHHHHHHHhcH----------HHHHHHHHHHHhcCCCCHHHH
Confidence                99999999       899999999999999999999999999999          999999999999999999 77


Q ss_pred             HHHHHHHHHHcch
Q 010976          296 IYNLGTVLYGLAE  308 (496)
Q Consensus       296 ~~~lg~~~~~~g~  308 (496)
                      ...++.+...+.+
T Consensus       135 ~~~l~~~~~~~~~  147 (162)
T 3rkv_A          135 AREMKIVTERRAE  147 (162)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888877665

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.57  E-value=6.8e-14  Score=131.26  Aligned_cols=165  Identities=13%  Similarity=0.038  Sum_probs=134.5

Q ss_pred             hhhhhcHHHHHHHHHHhhccc-------------hhhhHhhccHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhcC
Q 010976          108 HQLAEQNNAAMELINSVTGVD-------------EEGRSRQRILTFAAKRYANAIERNPEDYD---ALYNWALVLQESAD  171 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~-------------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~---a~~~lg~~~~~~~~  171 (496)
                      +...|+++.|+..+.+++...             +.++..+|++++|+..|+++++.+|++..   +++.+|.++..++.
T Consensus        14 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~   93 (225)
T 2yhc_A           14 KLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDD   93 (225)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhh
Confidence            456789999999999988643             34567789999999999999999999864   89999999988653


Q ss_pred             CCC----CCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHHHHHcCCHHHHHHH
Q 010976          172 NVS----LDSTSPSKDALLEEACKKYDEATRLCPTLHDAF-----------------YNWAIAISDRAKMRGRTKEAEEL  230 (496)
Q Consensus       172 ~~~----~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~-----------------~~lg~~~~~~~~~~g~~~eA~~~  230 (496)
                      ..-    .........|++++|+..|+++++.+|++..++                 +.+|.+|..    .|++.+|+  
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~----~~~~~~A~--  167 (225)
T 2yhc_A           94 SALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE----RGAWVAVV--  167 (225)
T ss_dssp             --------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHH--
T ss_pred             hhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCcHHHHH--
Confidence            100    001112235679999999999999999987554                 567888888    99999999  


Q ss_pred             HHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH
Q 010976          231 WKQATKNYEKAVQLNWNSP---QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH  293 (496)
Q Consensus       231 ~~~A~~~~~~Al~l~P~~~---~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~  293 (496)
                           ..|+++++..|+++   .+++.+|.++.++|++          ++|+..|++++...|++.
T Consensus       168 -----~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~----------~~A~~~~~~l~~~~~~~~  218 (225)
T 2yhc_A          168 -----NRVEGMLRDYPDTQATRDALPLMENAYRQMQMN----------AQAEKVAKIIAANSSNTL  218 (225)
T ss_dssp             -----HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHCCSCCC
T ss_pred             -----HHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHhhCCCch
Confidence                 89999999999986   7899999999999999          999999999999888753

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.57  E-value=4.3e-14  Score=119.48  Aligned_cols=115  Identities=17%  Similarity=0.120  Sum_probs=106.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHH
Q 010976          201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS  280 (496)
Q Consensus       201 P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~  280 (496)
                      |..+..++++|..+..    .|++++|+       ..|+++++++|+++.+++++|.++..+|++          ++|+.
T Consensus         1 p~~a~~~~~~g~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~   59 (126)
T 3upv_A            1 SMKAEEARLEGKEYFT----KSDWPNAV-------KAYTEMIKRAPEDARGYSNRAAALAKLMSF----------PEAIA   59 (126)
T ss_dssp             CHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHH
T ss_pred             CchHHHHHHHHHHHHH----hcCHHHHH-------HHHHHHHHhCCCChHHHHHHHHHHHHhcCH----------HHHHH
Confidence            4457889999999999    99999999       899999999999999999999999999999          99999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcC------CcHHHHHHHHHh
Q 010976          281 KFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK------PSYSVYSSALRL  354 (496)
Q Consensus       281 ~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~------p~~~~y~~al~~  354 (496)
                      .|+++++++|+++.+++++|.++..+|+                   +..|..+|+++++++      |.+......+..
T Consensus        60 ~~~~al~~~p~~~~~~~~lg~~~~~~~~-------------------~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~  120 (126)
T 3upv_A           60 DCNKAIEKDPNFVRAYIRKATAQIAVKE-------------------YASALETLDAARTKDAEVNNGSSAREIDQLYYK  120 (126)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHhC-------------------HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence            9999999999999999999999999999                   999999999999999      888876666654


Q ss_pred             h
Q 010976          355 V  355 (496)
Q Consensus       355 ~  355 (496)
                      +
T Consensus       121 ~  121 (126)
T 3upv_A          121 A  121 (126)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.56  E-value=2.5e-14  Score=121.05  Aligned_cols=102  Identities=14%  Similarity=0.142  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 010976          158 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN  237 (496)
Q Consensus       158 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~  237 (496)
                      .++.+|.++...|+              +++|+..|+++++++|+++.+|+++|.++..    +|++++|+       ..
T Consensus        19 ~~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~A~-------~~   73 (121)
T 1hxi_A           19 NPMEEGLSMLKLAN--------------LAEAALAFEAVCQKEPEREEAWRSLGLTQAE----NEKDGLAI-------IA   73 (121)
T ss_dssp             CHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH-------HH
T ss_pred             hHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHH-------HH
Confidence            47889999999999              9999999999999999999999999999999    99999999       89


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHH
Q 010976          238 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR  294 (496)
Q Consensus       238 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~  294 (496)
                      |+++++++|+++.+++++|.+|..+|++          ++|+..|+++++++|++..
T Consensus        74 ~~~al~l~P~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           74 LNHARMLDPKDIAVHAALAVSHTNEHNA----------NAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHC-------
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcCCCC
Confidence            9999999999999999999999999999          9999999999999998754

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.56  E-value=1.3e-13  Score=121.31  Aligned_cols=124  Identities=19%  Similarity=0.161  Sum_probs=113.6

Q ss_pred             hhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010976          130 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN  209 (496)
Q Consensus       130 ~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~  209 (496)
                      ..+...|++++|+..|+++++.+|++..+++++|.++..+|+              +++|+..|++++.++|++..++++
T Consensus        21 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~   86 (166)
T 1a17_A           21 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--------------YGYALGDATRAIELDKKYIKGYYR   86 (166)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCcccHHHHHH
Confidence            345668999999999999999999999999999999999999              999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHccCcchHHHhhhhHHHHHHHHHHHHH
Q 010976          210 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA--LQELSAIVPAREKQTIVRTAISKFRAAIQ  287 (496)
Q Consensus       210 lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~--l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~  287 (496)
                      +|.++..    +|++++|+       ..|+++++++|++..++..++.+  +...|++          ++|+..+.++..
T Consensus        87 ~a~~~~~----~~~~~~A~-------~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~  145 (166)
T 1a17_A           87 RAASNMA----LGKFRAAL-------RDYETVVKVKPHDKDAKMKYQECNKIVKQKAF----------ERAIAGDEHKRS  145 (166)
T ss_dssp             HHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
T ss_pred             HHHHHHH----hccHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH----------HHHHHcccchHH
Confidence            9999999    99999999       89999999999999998665555  7777887          999999998766


Q ss_pred             h
Q 010976          288 L  288 (496)
Q Consensus       288 l  288 (496)
                      +
T Consensus       146 ~  146 (166)
T 1a17_A          146 V  146 (166)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.56  E-value=4.5e-14  Score=126.73  Aligned_cols=130  Identities=12%  Similarity=0.055  Sum_probs=116.4

Q ss_pred             cchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-
Q 010976          180 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA-  258 (496)
Q Consensus       180 ~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~-  258 (496)
                      ....+++++|+..|+++++.+|++..+++.+|.+|..    .|++++|+       ..|+++++++|+++.+++++|.+ 
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~la~~l   88 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLW----QNDYSNSL-------LAYRQALQLRGENAELYAALATVL   88 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4456779999999999999999999999999999999    99999999       89999999999999999999999 


Q ss_pred             HHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHH
Q 010976          259 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAA  338 (496)
Q Consensus       259 l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a  338 (496)
                      +...|++        ..++|+..|+++++++|++..+++++|.++...|+                   +..|..+|.++
T Consensus        89 ~~~~~~~--------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~a  141 (177)
T 2e2e_A           89 YYQASQH--------MTAQTRAMIDKALALDSNEITALMLLASDAFMQAN-------------------YAQAIELWQKV  141 (177)
T ss_dssp             HHHTTTC--------CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHH
T ss_pred             HHhcCCc--------chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc-------------------HHHHHHHHHHH
Confidence            7788882        01899999999999999999999999999999999                   89999999999


Q ss_pred             HhcCCcHHH
Q 010976          339 HALKPSYSV  347 (496)
Q Consensus       339 ~~l~p~~~~  347 (496)
                      +.++|.+..
T Consensus       142 l~~~p~~~~  150 (177)
T 2e2e_A          142 MDLNSPRIN  150 (177)
T ss_dssp             HHTCCTTSC
T ss_pred             HhhCCCCcc
Confidence            999998763

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.56  E-value=1.4e-13  Score=113.27  Aligned_cols=115  Identities=17%  Similarity=0.171  Sum_probs=109.5

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010976          155 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA  234 (496)
Q Consensus       155 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A  234 (496)
                      .+..++.+|.++...|+              +++|+..|++++.++|++..+++++|.++..    .|++++|+      
T Consensus         3 ~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~------   58 (118)
T 1elw_A            3 QVNELKEKGNKALSVGN--------------IDDALQCYSEAIKLDPHNHVLYSNRSAAYAK----KGDYQKAY------   58 (118)
T ss_dssp             HHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHH------
T ss_pred             hHHHHHHHHHHHHHccc--------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh----hccHHHHH------
Confidence            46789999999999999              9999999999999999999999999999999    99999999      


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010976          235 TKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY  304 (496)
Q Consensus       235 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~  304 (496)
                       ..|+++++++|+++.+++++|.++..+|++          ++|+..|+++++++|++..++.+++.+..
T Consensus        59 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           59 -EDGCKTVDLKPDWGKGYSRKAAALEFLNRF----------EEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             -HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHhCcccHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence             899999999999999999999999999999          99999999999999999999999988753

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.55  E-value=1.4e-13  Score=137.73  Aligned_cols=125  Identities=12%  Similarity=0.056  Sum_probs=115.8

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHH
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPED---------------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKY  193 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~---------------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  193 (496)
                      +..++.+|++++|+..|+++++++|++               ..+|+++|.+|..+|+              +++|+.+|
T Consensus       154 g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--------------~~~A~~~~  219 (336)
T 1p5q_A          154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA--------------FSAAIESC  219 (336)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC--------------HHHHHHHH
Confidence            445777899999999999999999999               6999999999999999              99999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhh
Q 010976          194 DEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQT  273 (496)
Q Consensus       194 ~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~  273 (496)
                      +++++++|++..+++++|.+|..    +|++++|+       ..|+++++++|++..++.++|.++..+|++        
T Consensus       220 ~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~-------~~~~~al~l~P~~~~a~~~l~~~~~~~~~~--------  280 (336)
T 1p5q_A          220 NKALELDSNNEKGLSRRGEAHLA----VNDFELAR-------ADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ--------  280 (336)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCSSCHHHHHHHHHHHHHHHHH--------
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--------
Confidence            99999999999999999999999    99999999       899999999999999999999999999999        


Q ss_pred             hHHHH-HHHHHHHHHh
Q 010976          274 IVRTA-ISKFRAAIQL  288 (496)
Q Consensus       274 ~~~~A-i~~~~~Al~l  288 (496)
                        ++| ...|++.+..
T Consensus       281 --~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          281 --LAREKKLYANMFER  294 (336)
T ss_dssp             --HHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHH
Confidence              777 4567766643

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.55  E-value=3.7e-14  Score=143.60  Aligned_cols=167  Identities=13%  Similarity=0.029  Sum_probs=142.1

Q ss_pred             hhhHhhccHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC-
Q 010976          130 EGRSRQRILTFAAKRYANAIERNP------EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-  202 (496)
Q Consensus       130 ~~~~~~g~~~~Ai~~~~~al~~~P------~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~-  202 (496)
                      ..+...|++++|+..|++++++.+      ..+.+++++|.+|..+|+              +++|+.++++|+.+.+. 
T Consensus       109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~--------------~~~A~~~~~~al~~~~~~  174 (378)
T 3q15_A          109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQ--------------THVSMYHILQALDIYQNH  174 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCC--------------cHHHHHHHHHHHHHHHhC
Confidence            345678999999999999998742      356799999999999999              99999999999998543 


Q ss_pred             ------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHH
Q 010976          203 ------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVR  276 (496)
Q Consensus       203 ------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~  276 (496)
                            .+.+++++|.+|..    +|++++|++.|++|+..+++. ...+....+++++|.+|..+|++          +
T Consensus       175 ~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~y~~~~~~----------~  239 (378)
T 3q15_A          175 PLYSIRTIQSLFVIAGNYDD----FKHYDKALPHLEAALELAMDI-QNDRFIAISLLNIANSYDRSGDD----------Q  239 (378)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCH----------H
T ss_pred             CCchhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHCCCH----------H
Confidence                  35688999999999    999999997777777766442 11122457899999999999999          9


Q ss_pred             HHHHHHHHHHH-----hcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976          277 TAISKFRAAIQ-----LQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  344 (496)
Q Consensus       277 ~Ai~~~~~Al~-----l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~  344 (496)
                      +|+.+|+++++     .+|....+++++|.++..+|+                   +..|..++++++.+.+.
T Consensus       240 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          240 MAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ-------------------TQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHHHHHH
Confidence            99999999999     788889999999999999999                   88999999999988443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.55  E-value=2.2e-14  Score=145.84  Aligned_cols=175  Identities=15%  Similarity=0.064  Sum_probs=145.8

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh-----
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPEDY----DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-----  199 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~----~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-----  199 (496)
                      +..+...|++++|+..|+++++++|++.    .+++.+|.+|..+|+              +++|+.+|++++++     
T Consensus        55 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~~~~~  120 (411)
T 4a1s_A           55 GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGD--------------YNKAMQYHKHDLTLAKSMN  120 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHHHHcc
Confidence            3446678999999999999999999987    589999999999999              99999999999998     


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----------cchH
Q 010976          200 -CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA----------IVPA  268 (496)
Q Consensus       200 -~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~----------~~~A  268 (496)
                       .|....+++++|.+|..    +|++++|+..|++|+..+.+. ...|....+++++|.+|..+|+          +   
T Consensus       121 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~---  192 (411)
T 4a1s_A          121 DRLGEAKSSGNLGNTLKV----MGRFDEAAICCERHLTLARQL-GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFG---  192 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC---
T ss_pred             CchHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHcCcccccccchhhh---
Confidence             67788999999999999    999999997777777766553 2245667899999999999999          1   


Q ss_pred             HHhhhhHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 010976          269 REKQTIVRTAISKFRAAIQLQ------FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK  342 (496)
Q Consensus       269 ~~~~~~~~~Ai~~~~~Al~l~------P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~  342 (496)
                      .+....+++|+..|++++++.      +....+++++|.++...|+                   +..|..+|++++++.
T Consensus       193 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~al~~~  253 (411)
T 4a1s_A          193 DDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD-------------------FQAAIEHHQERLRIA  253 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-------------------hHHHHHHHHHHHHHH
Confidence            011111299999999999874      3456799999999999998                   788888888888776


Q ss_pred             Cc
Q 010976          343 PS  344 (496)
Q Consensus       343 p~  344 (496)
                      +.
T Consensus       254 ~~  255 (411)
T 4a1s_A          254 RE  255 (411)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.54  E-value=2.1e-14  Score=139.87  Aligned_cols=106  Identities=19%  Similarity=0.151  Sum_probs=102.4

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010976          153 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK  232 (496)
Q Consensus       153 P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~  232 (496)
                      |.++.+++.+|.+++..|+              +++|+..|+++++++|++..+++++|.+|..    +|++++|+    
T Consensus         1 p~~a~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~----   58 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRK--------------YPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQAL----   58 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHH----
T ss_pred             ChhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHH----
Confidence            6788999999999999999              9999999999999999999999999999999    99999999    


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH
Q 010976          233 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH  293 (496)
Q Consensus       233 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~  293 (496)
                         ..|+++++++|++..+++++|.+|..+|++          ++|+..|+++++++|++.
T Consensus        59 ---~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           59 ---ADCRRALELDGQSVKAHFFLGQCQLEMESY----------DEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             ---HHHHHHTTSCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTT
T ss_pred             ---HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCccch
Confidence               899999999999999999999999999999          999999999999999764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.54  E-value=2.3e-13  Score=132.92  Aligned_cols=160  Identities=16%  Similarity=0.051  Sum_probs=133.5

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC-
Q 010976          131 GRSRQRILTFAAKRYANAIERNPEDY------DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-  203 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~~------~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~-  203 (496)
                      .+...|++++|+..|.++++..+...      ..++.+|.++...|+              +++|+..|++++.+.+.. 
T Consensus        84 ~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~al~~~~~~~  149 (293)
T 2qfc_A           84 MLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD--------------YEYCILELKKLLNQQLTGI  149 (293)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSC--------------HHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCC--------------HHHHHHHHHHHHHHHhcCC
Confidence            35568999999999999999988765      346778899999999              999999999999886554 


Q ss_pred             -----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCcchHHHhhhh
Q 010976          204 -----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS----PQALNNWGLALQELSAIVPAREKQTI  274 (496)
Q Consensus       204 -----~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~g~~~~A~~~~~~  274 (496)
                           ..+++++|.+|..    +|++++|+..|++|+..++    ..|++    ..+++++|.+|..+|++         
T Consensus       150 ~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~kal~~~~----~~~~~~~~~~~~~~nlg~~y~~~~~y---------  212 (293)
T 2qfc_A          150 DVYQNLYIENAIANIYAE----NGYLKKGIDLFEQILKQLE----ALHDNEEFDVKVRYNHAKALYLDSRY---------  212 (293)
T ss_dssp             CTTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHH----HSCCCHHHHHHHHHHHHHHHHHTTCH---------
T ss_pred             chHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHH----hcCccccchHHHHHhHHHHHHHHhhH---------
Confidence                 6799999999999    9999999966666665554    34443    26999999999999999         


Q ss_pred             HHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHH-HHHHHHHHhc
Q 010976          275 VRTAISKFRAAIQLQFD------FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQS-AIYIAAAHAL  341 (496)
Q Consensus       275 ~~~Ai~~~~~Al~l~P~------~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A-~~~~~~a~~l  341 (496)
                       ++|+.+|++++++.++      ...+++++|.+|..+|+                   +..| ..+|++|+.+
T Consensus       213 -~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~-------------------~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          213 -EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY-------------------EEAEIEDAYKKASFF  266 (293)
T ss_dssp             -HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC-------------------CHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC-------------------cHHHHHHHHHHHHHH
Confidence             9999999999998643      27899999999999998                   6677 6667777654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.54  E-value=3.3e-14  Score=138.70  Aligned_cols=191  Identities=13%  Similarity=0.093  Sum_probs=150.6

Q ss_pred             hhhhhhcHHHHHHHHHHhhccc----------------hhhhHhhcc--------------------HHHHHHHHHHHHH
Q 010976          107 PHQLAEQNNAAMELINSVTGVD----------------EEGRSRQRI--------------------LTFAAKRYANAIE  150 (496)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~l~~~----------------~~~~~~~g~--------------------~~~Ai~~~~~al~  150 (496)
                      .+...|+++.|+..+.+++...                +..+...|+                    +++|+..|++++.
T Consensus        92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~  171 (338)
T 3ro2_A           92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS  171 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            3456788899998888877654                234556788                    9999999999988


Q ss_pred             h------CCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHH
Q 010976          151 R------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRA  218 (496)
Q Consensus       151 ~------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~~  218 (496)
                      +      .+....++.++|.++...|+              +++|+..|++++.+.+..      ..+++++|.++..  
T Consensus       172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~--  235 (338)
T 3ro2_A          172 LVTALGDRAAQGRAFGNLGNTHYLLGN--------------FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF--  235 (338)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH--
Confidence            7      34456789999999999999              999999999999986543      3489999999999  


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC------
Q 010976          219 KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF------  292 (496)
Q Consensus       219 ~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~------  292 (496)
                        .|++++|+..|++++..+... ...+....+++++|.++..+|++          ++|+..|++++++.+..      
T Consensus       236 --~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~~  302 (338)
T 3ro2_A          236 --LGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDY----------EKAIDYHLKHLAIAQELKDRIGE  302 (338)
T ss_dssp             --HTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             --cCCHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHHHHhcCCcHHH
Confidence              999999996555555444331 00111277899999999999999          99999999999986543      


Q ss_pred             HHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcH
Q 010976          293 HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  345 (496)
Q Consensus       293 ~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~  345 (496)
                      ..++.++|.++..+|+                   +..|..+|++++++.+..
T Consensus       303 ~~~~~~la~~~~~~g~-------------------~~~A~~~~~~a~~~~~~~  336 (338)
T 3ro2_A          303 GRACWSLGNAYTALGN-------------------HDQAMHFAEKHLEISREV  336 (338)
T ss_dssp             HHHHHHHHHHHHHHTC-------------------HHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHcCC-------------------hHHHHHHHHHHHHHHHhh
Confidence            5689999999999999                   899999999999887643

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.54  E-value=1.1e-13  Score=128.99  Aligned_cols=166  Identities=14%  Similarity=-0.048  Sum_probs=135.2

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc----CCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHH
Q 010976          131 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA----DNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDA  206 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a  206 (496)
                      .+...+++++|+.+|+++++.  .++.+++++|.+|.. +    +              +++|+.+|++++  ++.++.+
T Consensus        27 ~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~--------------~~~A~~~~~~A~--~~g~~~a   87 (212)
T 3rjv_A           27 TWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQAD--------------YPQARQLAEKAV--EAGSKSG   87 (212)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCC--------------HHHHHHHHHHHH--HTTCHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCC--------------HHHHHHHHHHHH--HCCCHHH
Confidence            345579999999999999876  689999999999998 6    6              999999999995  4689999


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH----ccCcchHHHhhhhHHHHHH
Q 010976          207 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW--NSPQALNNWGLALQE----LSAIVPAREKQTIVRTAIS  280 (496)
Q Consensus       207 ~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P--~~~~a~~~lg~~l~~----~g~~~~A~~~~~~~~~Ai~  280 (496)
                      +++||.+|..-....+++++|+       .+|+++++..+  +++.++++||.+|..    .+++          ++|+.
T Consensus        88 ~~~Lg~~y~~g~g~~~d~~~A~-------~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~----------~~A~~  150 (212)
T 3rjv_A           88 EIVLARVLVNRQAGATDVAHAI-------TLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDD----------VKASE  150 (212)
T ss_dssp             HHHHHHHHTCGGGSSCCHHHHH-------HHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCH----------HHHHH
T ss_pred             HHHHHHHHHcCCCCccCHHHHH-------HHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCH----------HHHHH
Confidence            9999999963111145777777       89999999988  459999999999999    6777          99999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          281 KFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       281 ~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                      +|++|+++ +.++.++++||.+|..-...    ....         .+.+|..+|+++.+......
T Consensus       151 ~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg----~~~~---------d~~~A~~~~~~A~~~g~~~A  202 (212)
T 3rjv_A          151 YFKGSSSL-SRTGYAEYWAGMMFQQGEKG----FIEP---------NKQKALHWLNVSCLEGFDTG  202 (212)
T ss_dssp             HHHHHHHT-SCTTHHHHHHHHHHHHCBTT----TBCC---------CHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHc-CCCHHHHHHHHHHHHcCCCC----CCCC---------CHHHHHHHHHHHHHcCCHHH
Confidence            99999999 77888999999999764200    0000         17899999999998865444

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.54  E-value=1.2e-13  Score=117.89  Aligned_cols=107  Identities=13%  Similarity=0.084  Sum_probs=96.2

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHH
Q 010976          203 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKF  282 (496)
Q Consensus       203 ~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~  282 (496)
                      .+.++.++|.+++.    .|++++|+       .+|++|++++|+++.+|+++|.+|..+|++          ++|+..|
T Consensus         7 ~A~a~~~lG~~~~~----~~~~~~A~-------~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~----------~~A~~~~   65 (127)
T 4gcn_A            7 AAIAEKDLGNAAYK----QKDFEKAH-------VHYDKAIELDPSNITFYNNKAAVYFEEKKF----------AECVQFC   65 (127)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHH
T ss_pred             HHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHhHHHHHHHhhhH----------HHHHHHH
Confidence            45678999999999    99999999       899999999999999999999999999999          9999999


Q ss_pred             HHHHHhcCCCH-------HHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHH
Q 010976          283 RAAIQLQFDFH-------RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS  349 (496)
Q Consensus       283 ~~Al~l~P~~~-------~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~  349 (496)
                      +++++++|++.       .+++++|.++..+|+                   |..|+.+|++++...|+.....
T Consensus        66 ~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~-------------------~~~A~~~~~kal~~~~~~~~~~  120 (127)
T 4gcn_A           66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQND-------------------LSLAVQWFHRSLSEFRDPELVK  120 (127)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHSCCHHHHH
T ss_pred             HHHHHhCcccchhhHHHHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHhhCcCHHHHH
Confidence            99999998764       577888888888887                   9999999999999998765443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=1.6e-13  Score=118.13  Aligned_cols=120  Identities=18%  Similarity=0.097  Sum_probs=113.3

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHH
Q 010976          151 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEA  227 (496)
Q Consensus       151 ~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~~~~~g~~~eA  227 (496)
                      .+|.+...++.+|.++...|+              +++|+..|+++++++|++   ..+++++|.+|..    .|++++|
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A   84 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGD--------------YGGALAAYTQALGLDATPQDQAVLHRNRAACHLK----LEDYDKA   84 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTC--------------HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----TTCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH----HccHHHH
Confidence            468899999999999999999              999999999999999998   8999999999999    9999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 010976          228 EELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG  305 (496)
Q Consensus       228 ~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~  305 (496)
                      +       ..|+++++++|+++.+++++|.++..+|++          ++|+..|+++++++|++..++..++.+...
T Consensus        85 ~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A           85 E-------TEASKAIEKDGGDVKALYRRSQALEKLGRL----------DQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             H-------HHHHHHHHHTSCCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             H-------HHHHHHHhhCccCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            9       889999999999999999999999999999          999999999999999999999988887543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.53  E-value=1.5e-13  Score=147.06  Aligned_cols=169  Identities=9%  Similarity=0.059  Sum_probs=147.3

Q ss_pred             HHHHHHHHHhhccch----------hhhHhhcc----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--CC
Q 010976          115 NAAMELINSVTGVDE----------EGRSRQRI----------LTFAAKRYANAIERNPEDYDALYNWALVLQESA--DN  172 (496)
Q Consensus       115 ~~A~~~~~~~l~~~~----------~~~~~~g~----------~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~--~~  172 (496)
                      ++|+..+.+++....          ......++          +++++..|+++++.+|++..+|+.++.++..++  + 
T Consensus        46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~-  124 (567)
T 1dce_A           46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN-  124 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC-
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc-
Confidence            566788888777662          22233455          999999999999999999999999999999999  6 


Q ss_pred             CCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 010976          173 VSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG-RTKEAEELWKQATKNYEKAVQLNWNSPQA  251 (496)
Q Consensus       173 ~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g-~~~eA~~~~~~A~~~~~~Al~l~P~~~~a  251 (496)
                                   +++++++++++++++|.+..+|++++.++..    .| .+++++       +++.++++.+|.+..+
T Consensus       125 -------------~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~----l~~~~~~el-------~~~~~~I~~~p~n~sa  180 (567)
T 1dce_A          125 -------------WARELELCARFLEADERNFHCWDYRRFVAAQ----AAVAPAEEL-------AFTDSLITRNFSNYSS  180 (567)
T ss_dssp             -------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TCCCHHHHH-------HHHHTTTTTTCCCHHH
T ss_pred             -------------HHHHHHHHHHHHhhccccccHHHHHHHHHHH----cCCChHHHH-------HHHHHHHHHCCCCccH
Confidence                         7999999999999999999999999999999    99 888887       8999999999999999


Q ss_pred             HHHHHHHHHHccCcchHH----HhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          252 LNNWGLALQELSAIVPAR----EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       252 ~~~lg~~l~~~g~~~~A~----~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                      |+++|.++..+++..++.    -..+.++++++++.+|+.++|++..+|+.++.++...++
T Consensus       181 W~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          181 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             HHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence            999999999975542221    123667999999999999999999999999999988776

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.53  E-value=2e-14  Score=139.02  Aligned_cols=172  Identities=12%  Similarity=0.050  Sum_probs=135.2

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHH
Q 010976          134 RQRILTFAAKRYANAIERNPEDYDALYNW-------ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDA  206 (496)
Q Consensus       134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~l-------g~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a  206 (496)
                      .-+++..|...|.++++++|+.+++|.++       +.++..+++              ..+++..+++++.+.|....+
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r--------------~~~a~~~~~~~l~l~p~~l~a   83 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWY--------------SRRNFGQLSGSVQISMSTLNA   83 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHH--------------TGGGTTHHHHTTTCCGGGGCC
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHH--------------HHHHHHHHHHHhcCChhhhhh
Confidence            36899999999999999999999999999       899999999              999999999999998886555


Q ss_pred             HHH---------------------HHHHHHHHHHHcCCHHHHHHHHH--------------------------HHHHHHH
Q 010976          207 FYN---------------------WAIAISDRAKMRGRTKEAEELWK--------------------------QATKNYE  239 (496)
Q Consensus       207 ~~~---------------------lg~~~~~~~~~~g~~~eA~~~~~--------------------------~A~~~~~  239 (496)
                      +++                     ++.++..    .|++++|.+.|+                          .|+..|+
T Consensus        84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~----~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~  159 (282)
T 4f3v_A           84 RIAIGGLYGDITYPVTSPLAITMGFAACEAA----QGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVK  159 (282)
T ss_dssp             EEECCTTTCCCEEECSSHHHHHHHHHHHHHH----HTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             hhccCCcccccccccCCHhHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            555                     7788888    999999995431                          2333444


Q ss_pred             HHHhcCCC-C-HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc--CC-CHHHHHHHHHHHHHcchhHHhcc
Q 010976          240 KAVQLNWN-S-PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ--FD-FHRAIYNLGTVLYGLAEDTLRTG  314 (496)
Q Consensus       240 ~Al~l~P~-~-~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~--P~-~~~a~~~lg~~~~~~g~~~~a~~  314 (496)
                      +++...+. . ..+++++|.++..+|++          ++|+.+|++++.-.  |. ...+++++|.++..+|+      
T Consensus       160 ~a~~~~d~~~~~~a~~~LG~al~~LG~~----------~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr------  223 (282)
T 4f3v_A          160 SAGKWPDKFLAGAAGVAHGVAAANLALF----------TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN------  223 (282)
T ss_dssp             TGGGCSCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC------
T ss_pred             HhhccCCcccHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC------
Confidence            33332111 0 23555555555555555          99999999998654  55 56799999999999998      


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 010976          315 GTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALR  353 (496)
Q Consensus       315 ~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~  353 (496)
                                   ..+|...|++++..+|+ .....+|.
T Consensus       224 -------------~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          224 -------------ESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             -------------HHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             -------------HHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence                         78999999999999999 77666664

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.53  E-value=9.4e-14  Score=123.29  Aligned_cols=105  Identities=23%  Similarity=0.223  Sum_probs=98.8

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010976          131 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  210 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~l  210 (496)
                      .+...|++++|+.+|+++++++|+++.+|+++|.+|..+|+              +++|+.+|+++++++|++..+|+++
T Consensus        20 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~l   85 (164)
T 3sz7_A           20 AAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQ--------------HEKAAEDAELATVVDPKYSKAWSRL   85 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            45678999999999999999999999999999999999999              9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010976          211 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ  260 (496)
Q Consensus       211 g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~  260 (496)
                      |.+|..    +|++++|+       .+|+++++++|++..++++++....
T Consensus        86 g~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~~~l~~~  124 (164)
T 3sz7_A           86 GLARFD----MADYKGAK-------EAYEKGIEAEGNGGSDAMKRGLETT  124 (164)
T ss_dssp             HHHHHH----TTCHHHHH-------HHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHHHHH----ccCHHHHH-------HHHHHHHHhCCCchHHHHHHHHHHH
Confidence            999999    99999999       8999999999999998887776544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.52  E-value=1.3e-13  Score=134.26  Aligned_cols=152  Identities=16%  Similarity=-0.005  Sum_probs=115.7

Q ss_pred             hhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010976          130 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN  209 (496)
Q Consensus       130 ~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~  209 (496)
                      ..+...|++++|+..|+++++++|+++.+++++|.+|..+|+              +++|+..|+++++++|++..++++
T Consensus        12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~   77 (281)
T 2c2l_A           12 NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--------------PEQALADCRRALELDGQSVKAHFF   77 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHhCCCCHHHHHH
Confidence            345678999999999999999999999999999999999999              999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH---HHHccCcchH----------------HH
Q 010976          210 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA---LQELSAIVPA----------------RE  270 (496)
Q Consensus       210 lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~---l~~~g~~~~A----------------~~  270 (496)
                      +|.+|..    +|++++|+       ..|+++++++|++...+......   +.+...+...                .-
T Consensus        78 lg~~~~~----~g~~~~A~-------~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l  146 (281)
T 2c2l_A           78 LGQCQLE----MESYDEAI-------ANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL  146 (281)
T ss_dssp             HHHHHHH----TTCHHHHH-------HHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH
T ss_pred             HHHHHHH----cCCHHHHH-------HHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            9999999    99999999       67777777766542211111111   1111111000                00


Q ss_pred             hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 010976          271 KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL  306 (496)
Q Consensus       271 ~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~  306 (496)
                      ..|++++|++.|+++++++|++......++.++...
T Consensus       147 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  182 (281)
T 2c2l_A          147 IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKH  182 (281)
T ss_dssp             HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHH
Confidence            235558888888888888888877777777666555

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.51  E-value=2.1e-13  Score=138.01  Aligned_cols=171  Identities=12%  Similarity=0.067  Sum_probs=138.0

Q ss_pred             hhhhhcHHHHHHHHHHhhccc----------------hhhhHhhccHHHHHHHHHHHHHhCCC-------CHHHHHHHHH
Q 010976          108 HQLAEQNNAAMELINSVTGVD----------------EEGRSRQRILTFAAKRYANAIERNPE-------DYDALYNWAL  164 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~----------------~~~~~~~g~~~~Ai~~~~~al~~~P~-------~~~a~~~lg~  164 (496)
                      +...|+++.|+..+.+++...                +..+...|++++|+.+|++++.+.+.       ...++.++|.
T Consensus       111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~  190 (378)
T 3q15_A          111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG  190 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence            346789999999999988753                33566789999999999999987543       2568899999


Q ss_pred             HHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010976          165 VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY  238 (496)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~  238 (496)
                      +|..+|+              +++|+++|++++.+.+.      ...+++++|.+|..    +|++++|+..|++|+..+
T Consensus       191 ~y~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~~~  252 (378)
T 3q15_A          191 NYDDFKH--------------YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR----SGDDQMAVEHFQKAAKVS  252 (378)
T ss_dssp             HHHHTTC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCC--------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHH
Confidence            9999999              99999999999998431      35689999999999    999999997666666665


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHcch
Q 010976          239 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ-----FDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       239 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~-----P~~~~a~~~lg~~~~~~g~  308 (496)
                      ++.  .+|....+++++|.++..+|++          ++|+..|++++++.     +.....+..++.++...++
T Consensus       253 ~~~--~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~  315 (378)
T 3q15_A          253 REK--VPDLLPKVLFGLSWTLCKAGQT----------QKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD  315 (378)
T ss_dssp             HHH--CGGGHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred             Hhh--CChhHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence            543  5677799999999999999999          99999999999873     3344455556666655554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.51  E-value=6.1e-13  Score=111.32  Aligned_cols=110  Identities=22%  Similarity=0.251  Sum_probs=105.4

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010976          131 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  210 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~l  210 (496)
                      .+...|++++|+..|++++..+|+++.+++.+|.++...|+              +++|+..|++++.++|++..+++++
T Consensus        21 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~   86 (131)
T 2vyi_A           21 EQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGN--------------YAGAVQDCERAICIDPAYSKAYGRM   86 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc--------------hHHHHHHHHHHHhcCccCHHHHHHH
Confidence            45567999999999999999999999999999999999999              9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          211 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       211 g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      |.++..    .|++++|+       ..|+++++++|++..++.++|.++..+|++
T Consensus        87 ~~~~~~----~~~~~~A~-------~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           87 GLALSS----LNKHVEAV-------AYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHH----hCCHHHHH-------HHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            999999    99999999       899999999999999999999999999986

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.50  E-value=7.6e-14  Score=122.95  Aligned_cols=103  Identities=16%  Similarity=0.095  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHccCcchHHHh
Q 010976          204 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-------SPQ-----ALNNWGLALQELSAIVPAREK  271 (496)
Q Consensus       204 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~-------~~~-----a~~~lg~~l~~~g~~~~A~~~  271 (496)
                      +..+.++|..++.    .|+|++|+       ..|++||+++|+       +..     +|+|+|.++..+|++      
T Consensus        11 a~~~~~~G~~l~~----~g~~eeAi-------~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~------   73 (159)
T 2hr2_A           11 AYLALSDAQRQLV----AGEYDEAA-------ANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSF------   73 (159)
T ss_dssp             HHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCH------
T ss_pred             HHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCH------
Confidence            4678899999999    99999999       899999999999       544     999999999999999      


Q ss_pred             hhhHHHHHHHHHHHHHh-------cCCCHHHH----HHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHh
Q 010976          272 QTIVRTAISKFRAAIQL-------QFDFHRAI----YNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHA  340 (496)
Q Consensus       272 ~~~~~~Ai~~~~~Al~l-------~P~~~~a~----~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~  340 (496)
                          ++|+.+|++||++       +|++..+|    +++|.++..+|+                   |.+|+.+|+++++
T Consensus        74 ----~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr-------------------~eEAl~~y~kAle  130 (159)
T 2hr2_A           74 ----DEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGR-------------------GAEAMPEFKKVVE  130 (159)
T ss_dssp             ----HHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCC-------------------HHHHHHHHHHHHh
Confidence                9999999999999       99999999    999999999999                   9999999999999


Q ss_pred             cCCcHH
Q 010976          341 LKPSYS  346 (496)
Q Consensus       341 l~p~~~  346 (496)
                      ++|++.
T Consensus       131 l~p~d~  136 (159)
T 2hr2_A          131 MIEERK  136 (159)
T ss_dssp             HHHHCC
T ss_pred             cCCCcH
Confidence            999876

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.49  E-value=7.9e-13  Score=140.11  Aligned_cols=156  Identities=12%  Similarity=0.031  Sum_probs=139.8

Q ss_pred             hccHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH-H
Q 010976          135 QRILT-------FAAKRYANAIE-RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH-D  205 (496)
Q Consensus       135 ~g~~~-------~Ai~~~~~al~-~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~-~  205 (496)
                      .|+++       +|+..|+++++ ++|++..+|..+|.++...|+              +++|+..|+++++++|.++ .
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~  357 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK--------------YEKVHSIYNRLLAIEDIDPTL  357 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHSSSSCHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHhCccccCchH
Confidence            57776       89999999997 899999999999999999999              9999999999999999986 6


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHccCcchHHHhhhhHHHHHHHHHH
Q 010976          206 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA-LQELSAIVPAREKQTIVRTAISKFRA  284 (496)
Q Consensus       206 a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~-l~~~g~~~~A~~~~~~~~~Ai~~~~~  284 (496)
                      +|.++|.++..    .|++++|+       ..|++|++..|.+...+...+.+ +...|++          ++|+..|++
T Consensus       358 ~~~~~~~~~~~----~~~~~~A~-------~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~----------~~A~~~~e~  416 (530)
T 2ooe_A          358 VYIQYMKFARR----AEGIKSGR-------MIFKKAREDARTRHHVYVTAALMEYYCSKDK----------SVAFKIFEL  416 (530)
T ss_dssp             HHHHHHHHHHH----HHHHHHHH-------HHHHHHHTCTTCCTHHHHHHHHHHHHHTCCH----------HHHHHHHHH
T ss_pred             HHHHHHHHHHH----hcCHHHHH-------HHHHHHHhccCCchHHHHHHHHHHHHHcCCh----------hHHHHHHHH
Confidence            99999999988    88888888       88899999999888877777665 3458888          999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976          285 AIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  344 (496)
Q Consensus       285 Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~  344 (496)
                      +++..|+++.+|.+++.++...|+                   +..|..+|++++...|.
T Consensus       417 al~~~p~~~~~~~~~~~~~~~~g~-------------------~~~Ar~~~~~al~~~~~  457 (530)
T 2ooe_A          417 GLKKYGDIPEYVLAYIDYLSHLNE-------------------DNNTRVLFERVLTSGSL  457 (530)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTTTC-------------------HHHHHHHHHHHHHSCCS
T ss_pred             HHHHCCCCHHHHHHHHHHHHhCCC-------------------HhhHHHHHHHHHhccCC
Confidence            999999999999999999999998                   78889999999987654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.49  E-value=3.4e-13  Score=113.99  Aligned_cols=101  Identities=16%  Similarity=0.040  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH
Q 010976          206 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA  285 (496)
Q Consensus       206 a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A  285 (496)
                      .++.+|.++..    .|++++|+       ..|+++++++|+++.+|+++|.++..+|++          ++|+..|+++
T Consensus        19 ~~~~~g~~~~~----~g~~~~A~-------~~~~~al~~~P~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~a   77 (121)
T 1hxi_A           19 NPMEEGLSMLK----LANLAEAA-------LAFEAVCQKEPEREEAWRSLGLTQAENEKD----------GLAIIALNHA   77 (121)
T ss_dssp             CHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHH
T ss_pred             hHHHHHHHHHH----cCCHHHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHH
Confidence            47889999999    99999999       899999999999999999999999999999          9999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          286 IQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       286 l~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                      ++++|++..+++++|.+|...|+                   +.+|..+|+++++++|++.
T Consensus        78 l~l~P~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           78 RMLDPKDIAVHAALAVSHTNEHN-------------------ANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHC------
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCcCCC
Confidence            99999999999999999999999                   8999999999999999765

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.49  E-value=2.5e-13  Score=114.49  Aligned_cols=109  Identities=23%  Similarity=0.264  Sum_probs=103.7

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010976          131 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  210 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~l  210 (496)
                      .+...|++++|+..|+++++.+|++..+++++|.++...|+              +++|+..|+++++++|++..+++++
T Consensus        25 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~l   90 (133)
T 2lni_A           25 ECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE--------------FQLALKDCEECIQLEPTFIKGYTRK   90 (133)
T ss_dssp             HHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHhCCCchHHHHHH
Confidence            35568999999999999999999999999999999999999              9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 010976          211 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA  264 (496)
Q Consensus       211 g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~  264 (496)
                      |.++..    +|++++|+       ..|+++++++|.+..++.+++.++..+|+
T Consensus        91 a~~~~~----~~~~~~A~-------~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           91 AAALEA----MKDYTKAM-------DVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHH----TTCHHHHH-------HHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHH----HhhHHHHH-------HHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            999999    99999999       89999999999999999999999998774

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.48  E-value=4.8e-13  Score=112.15  Aligned_cols=119  Identities=18%  Similarity=0.138  Sum_probs=109.1

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010976          154 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ  233 (496)
Q Consensus       154 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~  233 (496)
                      ..+.+++.+|.++...|+              +++|+..|++++.++|++..+++++|.++..    .|++++|+     
T Consensus         2 ~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~-----   58 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKD--------------FDTALKHYDKAKELDPTNMTYITNQAAVYFE----KGDYNKCR-----   58 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHH-----
T ss_pred             hHHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----hccHHHHH-----
Confidence            446789999999999999              9999999999999999999999999999999    99999999     


Q ss_pred             HHHHHHHHHhcCCCC-------HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 010976          234 ATKNYEKAVQLNWNS-------PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL  306 (496)
Q Consensus       234 A~~~~~~Al~l~P~~-------~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~  306 (496)
                        ..|++++.++|.+       ..+++++|.++..+|++          ++|+..|++++++.| +...+..++.++..+
T Consensus        59 --~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~  125 (131)
T 1elr_A           59 --ELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKY----------KDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL  125 (131)
T ss_dssp             --HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence              6777777777766       89999999999999999          999999999999999 689999999988776


Q ss_pred             ch
Q 010976          307 AE  308 (496)
Q Consensus       307 g~  308 (496)
                      ++
T Consensus       126 ~~  127 (131)
T 1elr_A          126 KE  127 (131)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.48  E-value=1.1e-13  Score=136.24  Aligned_cols=171  Identities=18%  Similarity=0.175  Sum_probs=138.8

Q ss_pred             hhcHHHHHHHHHHhhccchhhhHh-hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHH
Q 010976          111 AEQNNAAMELINSVTGVDEEGRSR-QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEA  189 (496)
Q Consensus       111 ~~~~~~A~~~~~~~l~~~~~~~~~-~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A  189 (496)
                      .+++++|..++.++.......++. .++++.|+.+|.++              |.+|...|+              +++|
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~--------------~~~A   55 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKA--------------AVAFKNAKQ--------------LEQA   55 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHH--------------HHHHHHTTC--------------HHHH
T ss_pred             cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHH--------------HHHHHHcCC--------------HHHH
Confidence            577888888888777654333333 57899999998876              678889999              9999


Q ss_pred             HHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHc
Q 010976          190 CKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW-NSPQALNNWGLALQEL  262 (496)
Q Consensus       190 ~~~~~~Al~l~P~~------~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~  262 (496)
                      +.+|.+++.+.+..      ..++.++|.+|..    +|++++|+.+|++|+..+.+.-  ++ ....+++++|.+|.. 
T Consensus        56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~-  128 (307)
T 2ifu_A           56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKD----LQRMPEAVQYIEKASVMYVENG--TPDTAAMALDRAGKLMEP-  128 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCGGGGHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHc-
Confidence            99999999996543      5689999999999    9999999977777776654310  11 125689999999998 


Q ss_pred             cCcchHHHhhhhHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHH
Q 010976          263 SAIVPAREKQTIVRTAISKFRAAIQLQFDF------HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIA  336 (496)
Q Consensus       263 g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~------~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~  336 (496)
                      |++          ++|+.+|++|+++.+..      ..++.++|.+|..+|+                   |.+|+.+|+
T Consensus       129 g~~----------~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-------------------~~~A~~~~~  179 (307)
T 2ifu_A          129 LDL----------SKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK-------------------FDEAAASLQ  179 (307)
T ss_dssp             TCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------------HHHHHHHHH
T ss_pred             CCH----------HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC-------------------HHHHHHHHH
Confidence            999          99999999999998754      5789999999999999                   899999999


Q ss_pred             HHHhcCCcH
Q 010976          337 AAHALKPSY  345 (496)
Q Consensus       337 ~a~~l~p~~  345 (496)
                      +++.+.|..
T Consensus       180 ~al~~~~~~  188 (307)
T 2ifu_A          180 KEKSMYKEM  188 (307)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            999886543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.48  E-value=2.1e-13  Score=111.25  Aligned_cols=107  Identities=13%  Similarity=0.075  Sum_probs=102.9

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 010976          151 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL  230 (496)
Q Consensus       151 ~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~  230 (496)
                      ++|+++.+++.+|.++...|+              +++|+..|+++++++|++..+++++|.++..    +|++++|+  
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~----~~~~~~A~--   60 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGN--------------YTESIDLFEKAIQLDPEESKYWLMKGKALYN----LERYEEAV--   60 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCC--------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHH--
T ss_pred             CCCCcHHHHHHHHHHHHHhhh--------------HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----ccCHHHHH--
Confidence            468899999999999999999              9999999999999999999999999999999    99999999  


Q ss_pred             HHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-cCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976          231 WKQATKNYEKAVQLNWN--SPQALNNWGLALQEL-SAIVPAREKQTIVRTAISKFRAAIQLQFDF  292 (496)
Q Consensus       231 ~~~A~~~~~~Al~l~P~--~~~a~~~lg~~l~~~-g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~  292 (496)
                           ..|+++++++|.  +..+++++|.++..+ |++          ++|+.+|++++...|.+
T Consensus        61 -----~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           61 -----DCYNYVINVIEDEYNKDVWAAKADALRYIEGKE----------VEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             -----HHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCS----------HHHHHHHHHHGGGCCCC
T ss_pred             -----HHHHHHHHhCcccchHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHhhcccCC
Confidence                 899999999999  999999999999999 999          99999999999999875

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.48  E-value=2.4e-13  Score=120.38  Aligned_cols=112  Identities=16%  Similarity=0.097  Sum_probs=102.6

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHH
Q 010976          129 EEGRSRQRILTFAAKRYANAIER------------------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEAC  190 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~------------------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~  190 (496)
                      +..+++.|+|++|+..|.+++.+                  +|.+..+|+++|.+|..+|+              +++|+
T Consensus        18 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~--------------~~~A~   83 (162)
T 3rkv_A           18 GNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD--------------LHEAE   83 (162)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC--------------HHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc--------------HHHHH
Confidence            34466789999999999999999                  77788999999999999999              99999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHccCc
Q 010976          191 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP-QALNNWGLALQELSAI  265 (496)
Q Consensus       191 ~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~-~a~~~lg~~l~~~g~~  265 (496)
                      ..|++++.++|++..+|+++|.+|..    +|++++|+       ..|+++++++|++. .+...++.+...+++.
T Consensus        84 ~~~~~al~~~p~~~~a~~~~g~~~~~----~g~~~~A~-------~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~  148 (162)
T 3rkv_A           84 ETSSEVLKREETNEKALFRRAKARIA----AWKLDEAE-------EDLKLLLRNHPAAASVVAREMKIVTERRAEK  148 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHH----HhcHHHHH-------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999    99999999       89999999999999 6788888887776654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.47  E-value=1.2e-14  Score=152.47  Aligned_cols=122  Identities=16%  Similarity=0.095  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010976          156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT  235 (496)
Q Consensus       156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~  235 (496)
                      +.+++++|.++...|+              +++|++.|+++++++|++..+++++|.+|..    +|++++|+       
T Consensus         6 a~~~~~lg~~~~~~g~--------------~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~----~g~~~~A~-------   60 (477)
T 1wao_1            6 AEELKTQANDYFKAKD--------------YENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYAL-------   60 (477)
T ss_dssp             HTTSSSSSSSTTTTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------
T ss_pred             HHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHH-------
Confidence            3445666777777777              9999999999999999999999999999999    99999999       


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH--HHHcchhHHh
Q 010976          236 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV--LYGLAEDTLR  312 (496)
Q Consensus       236 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~--~~~~g~~~~a  312 (496)
                      ..|+++++++|+++.+++++|.+|..+|++          ++|+..|+++++++|++..++.+++.+  +...|+...+
T Consensus        61 ~~~~~al~l~p~~~~~~~~lg~~~~~~g~~----------~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A  129 (477)
T 1wao_1           61 GDATRAIELDKKYIKGYYRRAASNMALGKF----------RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERA  129 (477)
T ss_dssp             HHHHHHHHSCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999          999999999999999999999999999  7777764433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.47  E-value=6.8e-13  Score=113.16  Aligned_cols=107  Identities=16%  Similarity=0.155  Sum_probs=101.0

Q ss_pred             HhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHH
Q 010976          198 RLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRT  277 (496)
Q Consensus       198 ~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~  277 (496)
                      ..+|.++..++.+|.++..    .|++++|+       ..|++++.++|+++.+++++|.++..+|++          ++
T Consensus         3 ~~~~~~~~~~~~~g~~~~~----~~~~~~A~-------~~~~~al~~~~~~~~~~~~l~~~~~~~~~~----------~~   61 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFV----GRKYPEAA-------ACYGRAITRNPLVAVYYTNRALCYLKMQQP----------EQ   61 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HH
T ss_pred             CCccccHHHHHHHHHHHHH----hCcHHHHH-------HHHHHHHhhCcCcHHHHHHHHHHHHHhcCH----------HH
Confidence            4578899999999999999    99999999       899999999999999999999999999999          99


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976          278 AISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  344 (496)
Q Consensus       278 Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~  344 (496)
                      |+..|+++++++|+++.+++++|.++..+|+                   +..|..+|.+++.++|+
T Consensus        62 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-------------------~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           62 ALADCRRALELDGQSVKAHFFLGQCQLEMES-------------------YDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCchhHHHHHHHHHHHHHHhh-------------------HHHHHHHHHHHHHHChh
Confidence            9999999999999999999999999999999                   89999999999999887

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.47  E-value=2e-14  Score=144.04  Aligned_cols=148  Identities=20%  Similarity=0.095  Sum_probs=97.9

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH-----------------HHHH
Q 010976          146 ANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH-----------------DAFY  208 (496)
Q Consensus       146 ~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~-----------------~a~~  208 (496)
                      ...+...+..+..++.+|.+++..|+              |++|+..|++++.++|++.                 .+|+
T Consensus       169 ~~~~~~~~~~a~~~~~~g~~~~~~g~--------------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~  234 (338)
T 2if4_A          169 DMTVEERIGAADRRKMDGNSLFKEEK--------------LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHL  234 (338)
T ss_dssp             BCCHHHHHHHHHHHHHHHHHTCSSSC--------------CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHH
Confidence            33334445567889999999999999              9999999999999999987                 4999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh
Q 010976          209 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  288 (496)
Q Consensus       209 ~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l  288 (496)
                      ++|.+|..    +|++++|+       .+|+++++++|++..+|+++|.+|..+|++          ++|+.+|++++++
T Consensus       235 nla~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~a~~~lg~a~~~~g~~----------~~A~~~l~~al~l  293 (338)
T 2if4_A          235 NIAACLIK----LKRYDEAI-------GHCNIVLTEEEKNPKALFRRGKAKAELGQM----------DSARDDFRKAQKY  293 (338)
T ss_dssp             HHHHHHHT----TTCCHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHTTTCH----------HHHHHHHHHTTC-
T ss_pred             HHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHH
Confidence            99999999    99999999       899999999999999999999999999999          9999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          289 QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       289 ~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                      +|++..++.+|+.+.......                  +..+...|.+++...|.+.
T Consensus       294 ~p~~~~a~~~L~~l~~~~~~~------------------~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          294 APDDKAIRRELRALAEQEKAL------------------YQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             ----------------------------------------------------------
T ss_pred             CCCCHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHhhCCCCCCC
Confidence            999999999999886544431                  4556667888888888765

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.47  E-value=7e-14  Score=146.72  Aligned_cols=132  Identities=18%  Similarity=0.182  Sum_probs=117.2

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY  208 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~  208 (496)
                      +..+..+|++++|+..|+++++++|+++.+++++|.+|..+|+              +++|++.|+++++++|+++.+++
T Consensus        13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~l~p~~~~~~~   78 (477)
T 1wao_1           13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--------------YGYALGDATRAIELDKKYIKGYY   78 (477)
T ss_dssp             SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHhCCCCHHHHH
Confidence            3446678999999999999999999999999999999999999              99999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHccCcchHHHhhhhHHHHHHHHH---
Q 010976          209 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA--LQELSAIVPAREKQTIVRTAISKFR---  283 (496)
Q Consensus       209 ~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~--l~~~g~~~~A~~~~~~~~~Ai~~~~---  283 (496)
                      ++|.+|..    +|++++|+       ..|+++++++|++..++.+++.+  +...|++          ++|+..|+   
T Consensus        79 ~lg~~~~~----~g~~~eA~-------~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~----------~~A~~~~~~~~  137 (477)
T 1wao_1           79 RRAASNMA----LGKFRAAL-------RDYETVVKVKPHDKDAKMKYQECNKIVKQKAF----------ERAIAGDEHKR  137 (477)
T ss_dssp             HHHHHHHH----HTCHHHHH-------HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHH----------CCC------CC
T ss_pred             HHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH----------HHHhccccccc
Confidence            99999999    99999999       89999999999999999999999  8888888          99999999   


Q ss_pred             --------HHHHhcCCCHHH
Q 010976          284 --------AAIQLQFDFHRA  295 (496)
Q Consensus       284 --------~Al~l~P~~~~a  295 (496)
                              +++.++|++..+
T Consensus       138 ~~~~~~~~~al~~~~~~~~~  157 (477)
T 1wao_1          138 SVVDSLDIESMTIEDEYSGP  157 (477)
T ss_dssp             STTTCCTTSSCCCCTTCCSC
T ss_pred             hhHhhhhhhhcccccccccc
Confidence                    888888765433

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.47  E-value=9.9e-13  Score=131.02  Aligned_cols=175  Identities=11%  Similarity=0.016  Sum_probs=147.2

Q ss_pred             HHHHHHHHHHhhccchh----------hhHhhc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-c-CCCCCCCCCc
Q 010976          114 NNAAMELINSVTGVDEE----------GRSRQR-ILTFAAKRYANAIERNPEDYDALYNWALVLQES-A-DNVSLDSTSP  180 (496)
Q Consensus       114 ~~~A~~~~~~~l~~~~~----------~~~~~g-~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~-~-~~~~~~~~~~  180 (496)
                      .++|+.++.+++..+..          .....+ .+++++..+.++|..+|++..+|+.++.++..+ + +         
T Consensus        70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~---------  140 (349)
T 3q7a_A           70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQD---------  140 (349)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSC---------
T ss_pred             CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCC---------
Confidence            35678888888877732          233456 599999999999999999999999999999998 7 7         


Q ss_pred             chhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010976          181 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKE-AEELWKQATKNYEKAVQLNWNSPQALNNWGLAL  259 (496)
Q Consensus       181 ~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~e-A~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  259 (496)
                           ++++++++.++++++|.+..+|+.++.++..    .|+++. ..+.+.++++++.++++.+|.|..+|++++.++
T Consensus       141 -----~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~----l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL  211 (349)
T 3q7a_A          141 -----PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSH----FSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLR  211 (349)
T ss_dssp             -----CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHH----HHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             -----hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                 8999999999999999999999999999988    766651 123344556999999999999999999999999


Q ss_pred             HHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010976          260 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED  309 (496)
Q Consensus       260 ~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~  309 (496)
                      ..++++.   .....++++++++++++.++|+|..+|+++..++...|+.
T Consensus       212 ~~l~~~~---~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          212 VSRPGAE---TSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             TTSTTCC---CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             Hhccccc---cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence            9998730   1122349999999999999999999999999999888764

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.46  E-value=5.8e-13  Score=122.00  Aligned_cols=112  Identities=20%  Similarity=0.180  Sum_probs=106.0

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHH
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPEDY----------------DALYNWALVLQESADNVSLDSTSPSKDALLEEACKK  192 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~----------------~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  192 (496)
                      +..++..|++++|+..|++++.+.|.++                .+++++|.+|..+|+              +++|+.+
T Consensus        45 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~  110 (198)
T 2fbn_A           45 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD--------------YPKAIDH  110 (198)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC--------------HHHHHHH
Confidence            3346678999999999999999999987                899999999999999              9999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          193 YDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       193 ~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      |++++.++|++..+++++|.+|..    +|++++|+       ..|+++++++|++..++.+++.++..+++.
T Consensus       111 ~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  172 (198)
T 2fbn_A          111 ASKVLKIDKNNVKALYKLGVANMY----FGFLEEAK-------ENLYKAASLNPNNLDIRNSYELCVNKLKEA  172 (198)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHH----cccHHHHH-------HHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999    99999999       899999999999999999999999999887

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.46  E-value=1.4e-12  Score=109.97  Aligned_cols=116  Identities=14%  Similarity=0.034  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010976          157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DAFYNWAIAISDRAKMRGRTKEAEELWKQ  233 (496)
Q Consensus       157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~---~a~~~lg~~~~~~~~~~g~~~eA~~~~~~  233 (496)
                      ++++.+|.++...|+              +++|+..|+++++.+|++.   .+++++|.++..    +|++++|+     
T Consensus         3 ~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~----~~~~~~A~-----   59 (129)
T 2xev_A            3 RTAYNVAFDALKNGK--------------YDDASQLFLSFLELYPNGVYTPNALYWLGESYYA----TRNFQLAE-----   59 (129)
T ss_dssp             CCHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH----TTCHHHHH-----
T ss_pred             HHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH----hccHHHHH-----
Confidence            457899999999999              9999999999999999988   899999999999    99999999     


Q ss_pred             HHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976          234 ATKNYEKAVQLNWNS---PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  307 (496)
Q Consensus       234 A~~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g  307 (496)
                        ..|++++..+|++   +.+++++|.++..+|++          ++|+..|+++++..|++..+...+..+....+
T Consensus        60 --~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~  124 (129)
T 2xev_A           60 --AQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKN----------TEAQQTLQQVATQYPGSDAARVAQERLQSIRL  124 (129)
T ss_dssp             --HHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred             --HHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence              8999999999999   99999999999999999          99999999999999999988776666554444

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.45  E-value=5.1e-13  Score=121.61  Aligned_cols=162  Identities=9%  Similarity=0.034  Sum_probs=128.1

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh------CCCCHHH
Q 010976          133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL------CPTLHDA  206 (496)
Q Consensus       133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l------~P~~~~a  206 (496)
                      ...|++++|...++......+....++..+|.++...|+              +++|+.+|++++.+      .+....+
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~   68 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDR--------------FDEARASFQALQQQAQKSGDHTAEHRA   68 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCc--------------HHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            346899999996655544333678999999999999999              99999999999994      4556788


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH
Q 010976          207 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW-NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA  285 (496)
Q Consensus       207 ~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A  285 (496)
                      ++++|.++..    +|++++|+..|++|+..+++. ..++ ....+++++|.++..+|++          ++|+..|+++
T Consensus        69 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~a  133 (203)
T 3gw4_A           69 LHQVGMVERM----AGNWDAARRCFLEERELLASL-PEDPLAASANAYEVATVALHFGDL----------AGARQEYEKS  133 (203)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHH
T ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHH
Confidence            9999999999    999999997777776666521 1122 3467899999999999999          9999999999


Q ss_pred             HHhcC--CC----HHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 010976          286 IQLQF--DF----HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK  342 (496)
Q Consensus       286 l~l~P--~~----~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~  342 (496)
                      +++.+  .+    ..++.++|.++...|+                   +.+|..++++++++.
T Consensus       134 l~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          134 LVYAQQADDQVAIACAFRGLGDLAQQEKN-------------------LLEAQQHWLRARDIF  177 (203)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHCcC-------------------HHHHHHHHHHHHHHH
Confidence            98742  22    3457899999999998                   888888888887763

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.45  E-value=9.5e-13  Score=122.47  Aligned_cols=143  Identities=20%  Similarity=0.089  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 010976          139 TFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRA  218 (496)
Q Consensus       139 ~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~  218 (496)
                      .+|+..|+++.+.  .++.+++++|.+|...++              +++|+.+|+++++.  +++.++++||.+|..  
T Consensus         3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~--------------~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~--   62 (212)
T 3rjv_A            3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGD--------------YQKAEYWAQKAAAQ--GDGDALALLAQLKIR--   62 (212)
T ss_dssp             -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHT--TCHHHHHHHHHHTTS--
T ss_pred             chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCC--------------HHHHHHHHHHHHHc--CCHHHHHHHHHHHHc--
Confidence            3588899999886  799999999999999999              99999999999875  689999999999875  


Q ss_pred             HHcC---CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCcchHHHhhhhHHHHHHHHHHHHHhcC-
Q 010976          219 KMRG---RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE----LSAIVPAREKQTIVRTAISKFRAAIQLQF-  290 (496)
Q Consensus       219 ~~~g---~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P-  290 (496)
                        .|   ++++|+       .+|++++  ++.++.++++||.+|..    .+++          ++|+.+|++|++..+ 
T Consensus        63 --~g~~~~~~~A~-------~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~----------~~A~~~~~~A~~~~~~  121 (212)
T 3rjv_A           63 --NPQQADYPQAR-------QLAEKAV--EAGSKSGEIVLARVLVNRQAGATDV----------AHAITLLQDAARDSES  121 (212)
T ss_dssp             --STTSCCHHHHH-------HHHHHHH--HTTCHHHHHHHHHHHTCGGGSSCCH----------HHHHHHHHHHTSSTTS
T ss_pred             --CCCCCCHHHHH-------HHHHHHH--HCCCHHHHHHHHHHHHcCCCCccCH----------HHHHHHHHHHHHcCCC
Confidence              33   788888       6777764  45799999999999987    6677          999999999999988 


Q ss_pred             -CCHHHHHHHHHHHHH----cchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhc
Q 010976          291 -DFHRAIYNLGTVLYG----LAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL  341 (496)
Q Consensus       291 -~~~~a~~~lg~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l  341 (496)
                       +++.++++||.+|..    .++                   +..|..+|+++.++
T Consensus       122 ~~~~~a~~~Lg~~y~~g~g~~~d-------------------~~~A~~~~~~A~~~  158 (212)
T 3rjv_A          122 DAAVDAQMLLGLIYASGVHGPED-------------------DVKASEYFKGSSSL  158 (212)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSSCC-------------------HHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHcCCCCCCC-------------------HHHHHHHHHHHHHc
Confidence             469999999999988    444                   78999999999998

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.44  E-value=2.3e-12  Score=136.55  Aligned_cols=161  Identities=14%  Similarity=0.100  Sum_probs=142.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------hcCCCCCCCCCcchhhhHH-------HHHHHHHHHHH-hCCCC
Q 010976          139 TFAAKRYANAIERNPEDYDALYNWALVLQE-------SADNVSLDSTSPSKDALLE-------EACKKYDEATR-LCPTL  203 (496)
Q Consensus       139 ~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~-------~~~~~~~~~~~~~~~~~~~-------~A~~~~~~Al~-l~P~~  203 (496)
                      .+++..|++++..+|.++++|+.+|..+..       .|+              ++       +|+..|++|++ ++|++
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~--------------~~~a~~~~~~A~~~~~~Al~~~~p~~  320 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGD--------------MNNAKLFSDEAANIYERAISTLLKKN  320 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTC--------------CHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccc--------------hhhhhhhhHHHHHHHHHHHHHhCccc
Confidence            478899999999999999999999999987       677              76       99999999997 89999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHccCcchHHHhhhhHHHHHHHH
Q 010976          204 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP-QALNNWGLALQELSAIVPAREKQTIVRTAISKF  282 (496)
Q Consensus       204 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~-~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~  282 (496)
                      ..+|+.+|.++..    .|++++|.       ..|+++++++|.++ .+|.++|.++.+.|++          ++|+..|
T Consensus       321 ~~l~~~~~~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~----------~~A~~~~  379 (530)
T 2ooe_A          321 MLLYFAYADYEES----RMKYEKVH-------SIYNRLLAIEDIDPTLVYIQYMKFARRAEGI----------KSGRMIF  379 (530)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHSSSSCHHHHHHHHHHHHHHHHHH----------HHHHHHH
T ss_pred             HHHHHHHHHHHHh----cCCHHHHH-------HHHHHHhCccccCchHHHHHHHHHHHHhcCH----------HHHHHHH
Confidence            9999999999999    99999999       89999999999986 6999999999999998          9999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHH-HHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 010976          283 RAAIQLQFDFHRAIYNLGTVL-YGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALR  353 (496)
Q Consensus       283 ~~Al~l~P~~~~a~~~lg~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~  353 (496)
                      ++|++..|.+...+...+.+. ...|+                   +..|..+|+++++..|++..+...+.
T Consensus       380 ~~Al~~~~~~~~~~~~~a~~~~~~~~~-------------------~~~A~~~~e~al~~~p~~~~~~~~~~  432 (530)
T 2ooe_A          380 KKAREDARTRHHVYVTAALMEYYCSKD-------------------KSVAFKIFELGLKKYGDIPEYVLAYI  432 (530)
T ss_dssp             HHHHTCTTCCTHHHHHHHHHHHHHTCC-------------------HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHhccCCchHHHHHHHHHHHHHcCC-------------------hhHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            999999998888877777663 34776                   78999999999999998875444433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.44  E-value=4e-12  Score=105.32  Aligned_cols=109  Identities=30%  Similarity=0.388  Sum_probs=103.0

Q ss_pred             hhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010976          130 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN  209 (496)
Q Consensus       130 ~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~  209 (496)
                      ..+...|++++|+..|++++..+|++..+++.+|.++...|+              +++|+..|++++.++|.+..++++
T Consensus        17 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~   82 (125)
T 1na0_A           17 NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPNNAEAWYN   82 (125)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHhCCccHHHHHH
Confidence            345668999999999999999999999999999999999999              999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 010976          210 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS  263 (496)
Q Consensus       210 lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g  263 (496)
                      +|.++..    .|++++|+       ..|+++++++|++..++.++|.++...|
T Consensus        83 la~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           83 LGNAYYK----QGDYDEAI-------EYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHH----hcCHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            9999999    99999999       8999999999999999999999988765

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.44  E-value=8.3e-12  Score=130.85  Aligned_cols=151  Identities=22%  Similarity=0.187  Sum_probs=104.5

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----cCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQES-----ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN  209 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~  209 (496)
                      .+++++|+.+|+++++.  .++.+++.+|.+|...     ++              +++|+..|+++++.  ++..++++
T Consensus       272 ~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~--------------~~~A~~~~~~a~~~--~~~~a~~~  333 (490)
T 2xm6_A          272 AKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKN--------------REQAISWYTKSAEQ--GDATAQAN  333 (490)
T ss_dssp             SCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCC--------------HHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCC--------------HHHHHHHHHHHHhc--CCHHHHHH
Confidence            45566666666665543  4555666666666555     44              66666666666554  34556666


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCcchHHHhhhhHHHHHHHHHHH
Q 010976          210 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE----LSAIVPAREKQTIVRTAISKFRAA  285 (496)
Q Consensus       210 lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~~A~~~~~~~~~Ai~~~~~A  285 (496)
                      +|.+|..    .|.    .+.+++|+.+|+++++.  +++.+++++|.+|..    .+++          ++|+.+|++|
T Consensus       334 lg~~y~~----~g~----~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~----------~~A~~~~~~A  393 (490)
T 2xm6_A          334 LGAIYFR----LGS----EEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDE----------QQAAIWMRKA  393 (490)
T ss_dssp             HHHHHHH----SCC----HHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH----------HHHHHHHHHH
T ss_pred             HHHHHHh----CCC----cccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH----------HHHHHHHHHH
Confidence            6666655    441    11233444777777766  578888888888888    6777          9999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHH----cchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976          286 IQLQFDFHRAIYNLGTVLYG----LAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  344 (496)
Q Consensus       286 l~l~P~~~~a~~~lg~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~  344 (496)
                      ++.  +++.++++||.+|..    .++                   +.+|..+|++++..+|+
T Consensus       394 ~~~--~~~~a~~~Lg~~y~~g~g~~~d-------------------~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          394 AEQ--GLSAAQVQLGEIYYYGLGVERD-------------------YVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             HHT--TCHHHHHHHHHHHHHTSSSCCC-------------------HHHHHHHHHHHHHHHCC
T ss_pred             HhC--CCHHHHHHHHHHHHcCCCCCCC-------------------HHHHHHHHHHHHHCCCC
Confidence            875  468899999999987    565                   78999999999999855

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.44  E-value=4.2e-12  Score=104.23  Aligned_cols=104  Identities=19%  Similarity=0.186  Sum_probs=99.2

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010976          131 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  210 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~l  210 (496)
                      .+...|++++|+..|++++..+|+++.+++.+|.++...|+              +++|+..|++++.++|++..+++++
T Consensus        13 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~   78 (118)
T 1elw_A           13 KALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD--------------YQKAYEDGCKTVDLKPDWGKGYSRK   78 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHHHhCcccHHHHHHH
Confidence            35568999999999999999999999999999999999999              9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010976          211 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL  259 (496)
Q Consensus       211 g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  259 (496)
                      |.++..    +|++++|+       ..|+++++++|++..++..++.+.
T Consensus        79 a~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           79 AAALEF----LNRFEEAK-------RTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHHHH----TTCHHHHH-------HHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHH----HhhHHHHH-------HHHHHHHHcCCCCHHHHHHHHHhh
Confidence            999999    99999999       899999999999999999998875

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.43  E-value=1.9e-12  Score=135.00  Aligned_cols=112  Identities=14%  Similarity=0.102  Sum_probs=103.5

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHH
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPED---------------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKY  193 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~---------------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  193 (496)
                      +..++.+|+|++|+..|+++++++|.+               ..+|+++|.+|..+++              +++|+.+|
T Consensus       275 G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--------------~~~A~~~~  340 (457)
T 1kt0_A          275 GTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE--------------YTKAVECC  340 (457)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC--------------HHHHHHHH
Confidence            445677899999999999999999999               7999999999999999              99999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          194 DEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       194 ~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      +++++++|++..+|+++|.+|..    +|++++|+       .+|+++++++|++..++.+++.++..++++
T Consensus       341 ~~al~~~p~~~~a~~~~g~a~~~----~g~~~~A~-------~~~~~al~l~P~~~~a~~~l~~~~~~~~~~  401 (457)
T 1kt0_A          341 DKALGLDSANEKGLYRRGEAQLL----MNEFESAK-------GDFEKVLEVNPQNKAARLQISMCQKKAKEH  401 (457)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHTTC----CHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCccHHHHHHHHHHHHH----ccCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999    99999999       899999999999999999999999999998

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.43  E-value=1.3e-12  Score=132.48  Aligned_cols=120  Identities=18%  Similarity=0.151  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHHHH
Q 010976          156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR----------------LCPTLHDAFYNWAIAISDRAK  219 (496)
Q Consensus       156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~----------------l~P~~~~a~~~lg~~~~~~~~  219 (496)
                      ...+..+|.+++..|+              +++|+..|+++++                ++|.+..+|+++|.+|..   
T Consensus       223 a~~~~~~g~~~~~~g~--------------~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~---  285 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQN--------------WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK---  285 (370)
T ss_dssp             HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            4668999999999999              9999999999999                788889999999999999   


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHH
Q 010976          220 MRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL  299 (496)
Q Consensus       220 ~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~l  299 (496)
                       +|++++|+       .+|+++++++|+++.+++++|.+|..+|++          ++|+..|++|++++|++..++..+
T Consensus       286 -~g~~~~A~-------~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~eA~~~l~~Al~l~P~~~~~~~~l  347 (370)
T 1ihg_A          286 -MSDWQGAV-------DSCLEALEIDPSNTKALYRRAQGWQGLKEY----------DQALADLKKAQEIAPEDKAIQAEL  347 (370)
T ss_dssp             -TTCHHHHH-------HHHHHHHTTCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             -ccCHHHHH-------HHHHHHHHhCchhHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCHHHHHHH
Confidence             99999999       899999999999999999999999999999          999999999999999999999999


Q ss_pred             HHHHHHcchhH
Q 010976          300 GTVLYGLAEDT  310 (496)
Q Consensus       300 g~~~~~~g~~~  310 (496)
                      +.++..+++..
T Consensus       348 ~~~~~~~~~~~  358 (370)
T 1ihg_A          348 LKVKQKIKAQK  358 (370)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998743

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.43  E-value=1.4e-13  Score=137.86  Aligned_cols=131  Identities=13%  Similarity=0.098  Sum_probs=84.7

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHH
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPEDY-----------------DALYNWALVLQESADNVSLDSTSPSKDALLEEACK  191 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~-----------------~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~  191 (496)
                      +..++..|+|++|+..|++++.++|++.                 .+|+++|.+|..+|+              +++|+.
T Consensus       186 g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~--------------~~~A~~  251 (338)
T 2if4_A          186 GNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR--------------YDEAIG  251 (338)
T ss_dssp             HHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC--------------CHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC--------------HHHHHH
Confidence            3446678999999999999999999987                 499999999999999              999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccCcchHHH
Q 010976          192 KYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE-LSAIVPARE  270 (496)
Q Consensus       192 ~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~~A~~  270 (496)
                      +|+++++++|++..+|+++|.+|..    +|++++|+       .+|+++++++|++..++.+++.+... .+..     
T Consensus       252 ~~~~al~~~p~~~~a~~~lg~a~~~----~g~~~~A~-------~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~-----  315 (338)
T 2if4_A          252 HCNIVLTEEEKNPKALFRRGKAKAE----LGQMDSAR-------DDFRKAQKYAPDDKAIRRELRALAEQEKALY-----  315 (338)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHH-------HHHHHTTC----------------------------
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-----
Confidence            9999999999999999999999999    99999999       89999999999999999999998544 4555     


Q ss_pred             hhhhHHHHHHHHHHHHHhcCCCHH
Q 010976          271 KQTIVRTAISKFRAAIQLQFDFHR  294 (496)
Q Consensus       271 ~~~~~~~Ai~~~~~Al~l~P~~~~  294 (496)
                           +++...|++++...|+++.
T Consensus       316 -----~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          316 -----QKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ------------------------
T ss_pred             -----HHHHHHHHHhhCCCCCCCC
Confidence                 8899999999999998754

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.41  E-value=3.8e-13  Score=112.49  Aligned_cols=106  Identities=10%  Similarity=0.066  Sum_probs=92.1

Q ss_pred             hccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976          135 QRILTFAAKRYANAIER---NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  211 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  211 (496)
                      +|++++|+.+|++++++   +|+++.+++++|.+|..+|+              +++|+..|+++++++|+++.+++++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~l~   68 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGE--------------YRKAEAVLANGVKQFPNHQALRVFYA   68 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            68899999999999999   69999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      .++..    +|++++|+       ..|+++++.+|+++........+....+.+
T Consensus        69 ~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~~~ai~~~~~~l  111 (117)
T 3k9i_A           69 MVLYN----LGRYEQGV-------ELLLKIIAETSDDETIQSYKQAILFYADKL  111 (117)
T ss_dssp             HHHHH----HTCHHHHH-------HHHHHHHHHHCCCHHHHHTHHHHHHHTTCT
T ss_pred             HHHHH----cCCHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            99999    99999999       899999999999988766555544444433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.40  E-value=5.4e-13  Score=111.56  Aligned_cols=103  Identities=15%  Similarity=0.116  Sum_probs=91.8

Q ss_pred             hhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010976          184 ALLEEACKKYDEATRL---CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ  260 (496)
Q Consensus       184 ~~~~~A~~~~~~Al~l---~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~  260 (496)
                      |++++|+.+|++++++   +|++..+++++|.+|..    +|++++|+       ..|+++++++|+++.+++++|.++.
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~l~~~~~   72 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT----LGEYRKAE-------AVLANGVKQFPNHQALRVFYAMVLY   72 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCchHHHHHHHHHHH
Confidence            4499999999999999   69999999999999999    99999999       8999999999999999999999999


Q ss_pred             HccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976          261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  307 (496)
Q Consensus       261 ~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g  307 (496)
                      .+|++          ++|+..|++++++.|+++.+......+....+
T Consensus        73 ~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~~  109 (117)
T 3k9i_A           73 NLGRY----------EQGVELLLKIIAETSDDETIQSYKQAILFYAD  109 (117)
T ss_dssp             HHTCH----------HHHHHHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred             HcCCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            99999          99999999999999999987665555544443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.39  E-value=1.8e-11  Score=119.27  Aligned_cols=152  Identities=10%  Similarity=-0.002  Sum_probs=121.9

Q ss_pred             hhhhcHHHHHHHHHHhhccc----------------hhhhHhhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH
Q 010976          109 QLAEQNNAAMELINSVTGVD----------------EEGRSRQRILTFAAKRYANAIERNPED------YDALYNWALVL  166 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~l~~~----------------~~~~~~~g~~~~Ai~~~~~al~~~P~~------~~a~~~lg~~~  166 (496)
                      ...+++++|+..+.+++...                +..+...|++++|+.+|++++.+.+..      ..+++++|.+|
T Consensus        86 ~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  165 (293)
T 2qfc_A           86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY  165 (293)
T ss_dssp             HHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            45678888888887766533                122345689999999999999876554      67999999999


Q ss_pred             HHhcCCCCCCCCCcchhhhHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 010976          167 QESADNVSLDSTSPSKDALLEEACKKYDEAT---RLCPTLH----DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE  239 (496)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al---~l~P~~~----~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~  239 (496)
                      ..+|+              +++|+.+|++++   ...|++.    .+++++|.+|..    +|++++|+..|++|+....
T Consensus       166 ~~~~~--------------~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~Al~~~~kal~~~~  227 (293)
T 2qfc_A          166 AENGY--------------LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             HHTTC--------------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHH
T ss_pred             HHcCC--------------HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH----HhhHHHHHHHHHHHHHHHH
Confidence            99999              999999999999   4466643    689999999999    9999999977777766653


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHH-HHHHHHHHHhc
Q 010976          240 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA-ISKFRAAIQLQ  289 (496)
Q Consensus       240 ~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~A-i~~~~~Al~l~  289 (496)
                      . .........+++++|.+|..+|++          ++| ..+|++|+.+.
T Consensus       228 ~-~~~~~~~~~~~~~lg~~y~~~g~~----------~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          228 R-INSMALIGQLYYQRGECLRKLEYE----------EAEIEDAYKKASFFF  267 (293)
T ss_dssp             H-TTBCSSHHHHHHHHHHHHHHTTCC----------HHHHHHHHHHHHHHH
T ss_pred             h-cCcHHHHHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHHHHH
Confidence            2 122222478999999999999999          999 78899998763

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=7e-12  Score=107.72  Aligned_cols=119  Identities=18%  Similarity=0.159  Sum_probs=110.6

Q ss_pred             HhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCcchHHHhhhh
Q 010976          198 RLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS---PQALNNWGLALQELSAIVPAREKQTI  274 (496)
Q Consensus       198 ~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~~~A~~~~~~  274 (496)
                      ..+|.+...++.+|..+..    .|++++|+       ..|+++++++|++   ..+++++|.++..+|++         
T Consensus        22 ~~~~~~~~~~~~~a~~~~~----~~~~~~A~-------~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~---------   81 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFK----CGDYGGAL-------AAYTQALGLDATPQDQAVLHRNRAACHLKLEDY---------   81 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHT----TTCHHHHH-------HHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCH---------
T ss_pred             ccchHHHHHHHHHHHHHHH----hCCHHHHH-------HHHHHHHHHcccchHHHHHHHHHHHHHHHHccH---------
Confidence            3568899999999999999    99999999       8999999999998   89999999999999999         


Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHh
Q 010976          275 VRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL  354 (496)
Q Consensus       275 ~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~  354 (496)
                       ++|+..|+++++++|++..+++++|.++..+|+                   +..|..+|++++.++|++..+...+..
T Consensus        82 -~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-------------------~~~A~~~~~~al~~~p~~~~~~~~l~~  141 (148)
T 2dba_A           82 -DKAETEASKAIEKDGGDVKALYRRSQALEKLGR-------------------LDQAVLDLQRCVSLEPKNKVFQEALRN  141 (148)
T ss_dssp             -HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTC-------------------HHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence             999999999999999999999999999999999                   899999999999999999877776665


Q ss_pred             hh
Q 010976          355 VR  356 (496)
Q Consensus       355 ~~  356 (496)
                      +.
T Consensus       142 ~~  143 (148)
T 2dba_A          142 IS  143 (148)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.38  E-value=1.9e-12  Score=105.45  Aligned_cols=107  Identities=19%  Similarity=0.132  Sum_probs=101.6

Q ss_pred             hCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHH
Q 010976          199 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA  278 (496)
Q Consensus       199 l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~A  278 (496)
                      ++|++..+++.+|.++..    .|++++|+       ..|+++++++|.+..+++++|.++..+|++          ++|
T Consensus         1 l~p~~~~~~~~~~~~~~~----~~~~~~A~-------~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~----------~~A   59 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYD----AGNYTESI-------DLFEKAIQLDPEESKYWLMKGKALYNLERY----------EEA   59 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHS----SCCHHHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHHTTCH----------HHH
T ss_pred             CCCCcHHHHHHHHHHHHH----hhhHHHHH-------HHHHHHHHhCcCCHHHHHHHHHHHHHccCH----------HHH
Confidence            478899999999999999    99999999       899999999999999999999999999999          999


Q ss_pred             HHHHHHHHHhcCC--CHHHHHHHHHHHHHc-chhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcH
Q 010976          279 ISKFRAAIQLQFD--FHRAIYNLGTVLYGL-AEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  345 (496)
Q Consensus       279 i~~~~~Al~l~P~--~~~a~~~lg~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~  345 (496)
                      +..|+++++++|+  +..+++++|.++..+ |+                   +.+|..++.+++...|..
T Consensus        60 ~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~-------------------~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           60 VDCYNYVINVIEDEYNKDVWAAKADALRYIEGK-------------------EVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSC-------------------SHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHhCcccchHHHHHHHHHHHHHHhCC-------------------HHHHHHHHHHHhhcccCC
Confidence            9999999999999  999999999999999 98                   889999999999988864

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.37  E-value=7.2e-11  Score=123.67  Aligned_cols=153  Identities=20%  Similarity=0.208  Sum_probs=106.3

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQE----SADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  210 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~l  210 (496)
                      .+++++|+.+|+++++.  .++.+++++|.+|..    .++              +++|+.+|+++++.  ++..+++++
T Consensus       236 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d--------------~~~A~~~~~~a~~~--~~~~a~~~L  297 (490)
T 2xm6_A          236 TQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKE--------------PLKALEWYRKSAEQ--GNSDGQYYL  297 (490)
T ss_dssp             CCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCC--------------HHHHHHHHHHHHTT--TCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCC--------------HHHHHHHHHHHHHc--CCHHHHHHH
Confidence            35566666666666543  455666666666665    455              77777777777654  566777777


Q ss_pred             HHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH
Q 010976          211 AIAISDRAKMR-----GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA  285 (496)
Q Consensus       211 g~~~~~~~~~~-----g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A  285 (496)
                      |.+|..    .     +++++|+       ..|+++++.  .++.+++++|.+|...|.       .+++++|+.+|+++
T Consensus       298 g~~y~~----~~~g~~~~~~~A~-------~~~~~a~~~--~~~~a~~~lg~~y~~~g~-------~~~~~~A~~~~~~a  357 (490)
T 2xm6_A          298 AHLYDK----GAEGVAKNREQAI-------SWYTKSAEQ--GDATAQANLGAIYFRLGS-------EEEHKKAVEWFRKA  357 (490)
T ss_dssp             HHHHHH----CBTTBCCCHHHHH-------HHHHHHHHT--TCHHHHHHHHHHHHHSCC-------HHHHHHHHHHHHHH
T ss_pred             HHHHHc----CCCCCcCCHHHHH-------HHHHHHHhc--CCHHHHHHHHHHHHhCCC-------cccHHHHHHHHHHH
Confidence            777766    6     6777777       566666554  467778888888777652       12448999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHH----cchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          286 IQLQFDFHRAIYNLGTVLYG----LAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       286 l~l~P~~~~a~~~lg~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                      ++.  +++.++++||.+|..    .++                   +.+|..+|+++.+......
T Consensus       358 ~~~--~~~~a~~~Lg~~y~~g~g~~~~-------------------~~~A~~~~~~A~~~~~~~a  401 (490)
T 2xm6_A          358 AAK--GEKAAQFNLGNALLQGKGVKKD-------------------EQQAAIWMRKAAEQGLSAA  401 (490)
T ss_dssp             HHT--TCHHHHHHHHHHHHHTSSSCCC-------------------HHHHHHHHHHHHHTTCHHH
T ss_pred             HHC--CCHHHHHHHHHHHHcCCCCCCC-------------------HHHHHHHHHHHHhCCCHHH
Confidence            887  678999999999887    555                   7888888888888754433

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.36  E-value=2e-11  Score=102.80  Aligned_cols=110  Identities=13%  Similarity=0.095  Sum_probs=98.6

Q ss_pred             hhhHhhccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC---
Q 010976          130 EGRSRQRILTFAAKRYANAIERNPEDY---DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---  203 (496)
Q Consensus       130 ~~~~~~g~~~~Ai~~~~~al~~~P~~~---~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~---  203 (496)
                      ..+...|++++|+..|+++++.+|++.   .+++.+|.++...|+              +++|+..|++++..+|++   
T Consensus        10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~--------------~~~A~~~~~~~~~~~p~~~~~   75 (129)
T 2xev_A           10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRN--------------FQLAEAQFRDLVSRYPTHDKA   75 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTSTTH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHHCCCCccc
Confidence            345668999999999999999999998   899999999999999              999999999999999999   


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 010976          204 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA  264 (496)
Q Consensus       204 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~  264 (496)
                      +.+++++|.++..    +|++++|+       ..|++++..+|++..+...+..+-...++
T Consensus        76 ~~~~~~la~~~~~----~g~~~~A~-------~~~~~~~~~~p~~~~~~~a~~~l~~l~~~  125 (129)
T 2xev_A           76 AGGLLKLGLSQYG----EGKNTEAQ-------QTLQQVATQYPGSDAARVAQERLQSIRLG  125 (129)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence            8999999999999    99999999       89999999999999887776666554444

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.35  E-value=1.6e-11  Score=123.36  Aligned_cols=164  Identities=11%  Similarity=-0.025  Sum_probs=137.1

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC--
Q 010976          131 GRSRQRILTFAAKRYANAIERNPEDY-----DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL--  203 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~~-----~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~--  203 (496)
                      .....|++++|+..+++++...|.+.     .++..+|.++...|+              +++|+..|++++.+.|..  
T Consensus        23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~   88 (373)
T 1hz4_A           23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGE--------------LTRSLALMQQTEQMARQHDV   88 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCc--------------HHHHHHHHHHHHHHHHhcCc
Confidence            35567999999999999999987653     368899999999999              999999999999986543  


Q ss_pred             ----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHH
Q 010976          204 ----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL-NWNSPQALNNWGLALQELSAIVPAREKQTIVRTA  278 (496)
Q Consensus       204 ----~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~A  278 (496)
                          ..+++++|.++..    +|++++|+..|++++..+.+.-.. .|....++.++|.++...|++          ++|
T Consensus        89 ~~~~~~~~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A  154 (373)
T 1hz4_A           89 WHYALWSLIQQSEILFA----QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL----------DEA  154 (373)
T ss_dssp             HHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH----------HHH
T ss_pred             HHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCH----------HHH
Confidence                2447899999999    999999997777777666543211 144567889999999999999          999


Q ss_pred             HHHHHHHHHhcCC-----CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhc
Q 010976          279 ISKFRAAIQLQFD-----FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL  341 (496)
Q Consensus       279 i~~~~~Al~l~P~-----~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l  341 (496)
                      +..|++++.+.+.     ...++.++|.++...|+                   +.+|..++++++.+
T Consensus       155 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------~~~A~~~l~~a~~~  203 (373)
T 1hz4_A          155 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD-------------------LDNARSQLNRLENL  203 (373)
T ss_dssp             HHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC-------------------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHH
Confidence            9999999998775     35689999999999999                   88888899888776

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.35  E-value=3.4e-11  Score=125.28  Aligned_cols=158  Identities=15%  Similarity=0.121  Sum_probs=124.6

Q ss_pred             hHhhc---cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----cCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH
Q 010976          132 RSRQR---ILTFAAKRYANAIERNPEDYDALYNWALVLQES----ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH  204 (496)
Q Consensus       132 ~~~~g---~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~  204 (496)
                      +...|   ++++|+..|+++++..|..+..++++|.+|...    ++              +++|+.+|+++.   |+++
T Consensus       186 ~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d--------------~~~A~~~~~~aa---~g~~  248 (452)
T 3e4b_A          186 YQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPD--------------EKTAQALLEKIA---PGYP  248 (452)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCC--------------HHHHHHHHHHHG---GGST
T ss_pred             HHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCC--------------HHHHHHHHHHHc---CCCH
Confidence            33456   999999999999999999999999999999654    45              999999999997   8999


Q ss_pred             HHHHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-----CcchHHHhhhhHH
Q 010976          205 DAFYNWAIAIS---DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS-----AIVPAREKQTIVR  276 (496)
Q Consensus       205 ~a~~~lg~~~~---~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g-----~~~~A~~~~~~~~  276 (496)
                      .++++||.+|.   .    .+++++|+       .+|+++++.  +++.++++||.+|. .|     ++          +
T Consensus       249 ~a~~~Lg~~~~~~~~----~~d~~~A~-------~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~----------~  304 (452)
T 3e4b_A          249 ASWVSLAQLLYDFPE----LGDVEQMM-------KYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADA----------K  304 (452)
T ss_dssp             HHHHHHHHHHHHSGG----GCCHHHHH-------HHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCH----------H
T ss_pred             HHHHHHHHHHHhCCC----CCCHHHHH-------HHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCH----------H
Confidence            99999999844   4    78888888       677777654  58999999999998 55     66          9


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHH
Q 010976          277 TAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVY  348 (496)
Q Consensus       277 ~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y  348 (496)
                      +|+.+|++|+   ++++.++++||.+|.. |..     ...         .+.+|..+|+++.+.......+
T Consensus       305 ~A~~~~~~Aa---~g~~~A~~~Lg~~y~~-G~g-----~~~---------d~~~A~~~~~~Aa~~g~~~A~~  358 (452)
T 3e4b_A          305 AAEAHFEKAV---GREVAADYYLGQIYRR-GYL-----GKV---------YPQKALDHLLTAARNGQNSADF  358 (452)
T ss_dssp             HHHHHHHTTT---TTCHHHHHHHHHHHHT-TTT-----SSC---------CHHHHHHHHHHHHTTTCTTHHH
T ss_pred             HHHHHHHHHh---CCCHHHHHHHHHHHHC-CCC-----CCc---------CHHHHHHHHHHHHhhChHHHHH
Confidence            9999999998   8899999999988876 320     000         1567777777777655444433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.35  E-value=6e-12  Score=122.75  Aligned_cols=150  Identities=10%  Similarity=-0.010  Sum_probs=118.0

Q ss_pred             hhhcHHHHHHHHHHhhccc----------------hhhhHhhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH
Q 010976          110 LAEQNNAAMELINSVTGVD----------------EEGRSRQRILTFAAKRYANAIERNPED------YDALYNWALVLQ  167 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~l~~~----------------~~~~~~~g~~~~Ai~~~~~al~~~P~~------~~a~~~lg~~~~  167 (496)
                      ..++++.|...+.+++...                +..+...+++++|+.+|++++.+.+..      ..++.++|.+|.
T Consensus        87 ~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  166 (293)
T 3u3w_A           87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA  166 (293)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence            4678888888888876633                122334579999999999999975443      347999999999


Q ss_pred             HhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 010976          168 ESADNVSLDSTSPSKDALLEEACKKYDEATRL-------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK  240 (496)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-------~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~  240 (496)
                      .+|+              +++|+.+|++++++       .+....+++++|.+|..    +|++++|++.+++|+....+
T Consensus       167 ~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~A~~~~~~al~~~~~  228 (293)
T 3u3w_A          167 ENGY--------------LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             HTTC--------------HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHH
T ss_pred             HcCC--------------HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHH
Confidence            9999              99999999999964       22345689999999999    99999999666666555433


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcc-CcchHHHhhhhHHHHHHHHHHHHHh
Q 010976          241 AVQLNWNSPQALNNWGLALQELS-AIVPAREKQTIVRTAISKFRAAIQL  288 (496)
Q Consensus       241 Al~l~P~~~~a~~~lg~~l~~~g-~~~~A~~~~~~~~~Ai~~~~~Al~l  288 (496)
                      . ...+....+++++|.++..+| .+          ++|+.+|++|+.+
T Consensus       229 ~-~~~~~~~~~~~~lg~~~~~~g~~~----------~~A~~~~~~Al~i  266 (293)
T 3u3w_A          229 I-NSMALIGQLYYQRGECLRKLEYEE----------AEIEDAYKKASFF  266 (293)
T ss_dssp             T-TBCTTHHHHHHHHHHHHHHTTCCH----------HHHHHHHHHHHHH
T ss_pred             c-CcHHHHHHHHHHHHHHHHHhCCcH----------HHHHHHHHHHHHH
Confidence            1 112333889999999999999 57          9999999999976

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.34  E-value=5.8e-12  Score=127.64  Aligned_cols=112  Identities=16%  Similarity=0.138  Sum_probs=106.7

Q ss_pred             hhhhHhhccHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHH
Q 010976          129 EEGRSRQRILTFAAKRYANAIE----------------RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK  192 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~----------------~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  192 (496)
                      +..++..|++++|+..|+++++                ++|.+..+|+++|.+|..+++              +++|+.+
T Consensus       230 g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--------------~~~A~~~  295 (370)
T 1ihg_A          230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD--------------WQGAVDS  295 (370)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC--------------HHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccC--------------HHHHHHH
Confidence            4456778999999999999999                788889999999999999999              9999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          193 YDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       193 ~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      |+++++++|++..+++++|.+|..    +|++++|+       ..|+++++++|++..++..++.++..++++
T Consensus       296 ~~~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~-------~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~  357 (370)
T 1ihg_A          296 CLEALEIDPSNTKALYRRAQGWQG----LKEYDQAL-------ADLKKAQEIAPEDKAIQAELLKVKQKIKAQ  357 (370)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCchhHHHHHHHHHHHHH----ccCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999    99999999       899999999999999999999999999988

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.33  E-value=5.6e-11  Score=119.32  Aligned_cols=168  Identities=14%  Similarity=0.026  Sum_probs=115.3

Q ss_pred             hhhhhcHHHHHHHHHHhhccc----------------hhhhHhhccHHHHHHHHHHHHHhC--------CCCHHHHHHHH
Q 010976          108 HQLAEQNNAAMELINSVTGVD----------------EEGRSRQRILTFAAKRYANAIERN--------PEDYDALYNWA  163 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~----------------~~~~~~~g~~~~Ai~~~~~al~~~--------P~~~~a~~~lg  163 (496)
                      +...|+++.|...+.+++...                +..+..+|++++|+.+|++++++.        |....++.++|
T Consensus        63 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  142 (373)
T 1hz4_A           63 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRA  142 (373)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHH
Confidence            456789999999988887643                233556799999999999999875        34567888999


Q ss_pred             HHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010976          164 LVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-----LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY  238 (496)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~-----~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~  238 (496)
                      .++...|+              +++|+.+|++++.+.+.     ...++.++|.++..    .|++++|+..+++++...
T Consensus       143 ~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~l~~a~~~~  204 (373)
T 1hz4_A          143 QLLWAWAR--------------LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA----RGDLDNARSQLNRLENLL  204 (373)
T ss_dssp             HHHHHTTC--------------HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC--------------HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Confidence            99999999              99999999999999875     35688999999999    999999995554444332


Q ss_pred             HHHHhcCCCC-HHHHH----HHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcch
Q 010976          239 EKAVQLNWNS-PQALN----NWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF----HRAIYNLGTVLYGLAE  308 (496)
Q Consensus       239 ~~Al~l~P~~-~~a~~----~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~----~~a~~~lg~~~~~~g~  308 (496)
                      .     .++. .....    .++.++...|++          ++|+..+++++...|..    ...+.++|.++...|+
T Consensus       205 ~-----~~~~~~~~~~~~~~~~~~~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~  268 (373)
T 1hz4_A          205 G-----NGKYHSDWISNANKVRVIYWQMTGDK----------AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE  268 (373)
T ss_dssp             T-----TSCCCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTC
T ss_pred             h-----ccCcchhHHHHHHHHHHHHHHHCCCH----------HHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCC
Confidence            1     1122 11111    234446677777          44444444444443321    3344444444444444

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.30  E-value=2.7e-11  Score=101.26  Aligned_cols=109  Identities=19%  Similarity=0.203  Sum_probs=100.5

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC-------
Q 010976          131 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-------  203 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~-------  203 (496)
                      .+...|++++|+..|++++..+|.++.+++++|.++...|+              +++|+.+|++++.++|++       
T Consensus        13 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~   78 (131)
T 1elr_A           13 DAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD--------------YNKCRELCEKAIEVGRENREDYRQI   78 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHhhccccchhHHHH
Confidence            35668999999999999999999999999999999999999              999999999999998887       


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          204 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       204 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      ..+++++|.++..    .|++++|+       ..|+++++++| +...+..++.++..+++.
T Consensus        79 ~~~~~~la~~~~~----~~~~~~A~-------~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           79 AKAYARIGNSYFK----EEKYKDAI-------HFYNKSLAEHR-TPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH----hccHHHHH-------HHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence            9999999999999    99999999       88899999998 689999999888776654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.30  E-value=1.8e-11  Score=105.96  Aligned_cols=139  Identities=15%  Similarity=0.087  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHcCCHHHHHH
Q 010976          156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEE  229 (496)
Q Consensus       156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~~~~~g~~~eA~~  229 (496)
                      ..++..+|.++...|+              +++|+.+|++++++.+..      ..+++++|.++..    +|++++|++
T Consensus         9 ~~~~~~l~~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~   70 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGN--------------FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF----LGEFETASE   70 (164)
T ss_dssp             HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH----cCCHHHHHH
Confidence            4678999999999999              999999999999986542      2589999999999    999999997


Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcC------CCHHHHHHHHHHH
Q 010976          230 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF------DFHRAIYNLGTVL  303 (496)
Q Consensus       230 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P------~~~~a~~~lg~~~  303 (496)
                      .|++|+..+... ...+....+++++|.++..+|++          ++|+..|++++++.+      ....++.++|.++
T Consensus        71 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~  139 (164)
T 3ro3_A           71 YYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDY----------EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY  139 (164)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHH
Confidence            777776665542 11111367899999999999999          999999999998743      2357899999999


Q ss_pred             HHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 010976          304 YGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK  342 (496)
Q Consensus       304 ~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~  342 (496)
                      ...|+                   +..|..++++++++.
T Consensus       140 ~~~g~-------------------~~~A~~~~~~a~~~~  159 (164)
T 3ro3_A          140 TALGN-------------------HDQAMHFAEKHLEIS  159 (164)
T ss_dssp             HHHTC-------------------HHHHHHHHHHHHHHH
T ss_pred             HHccC-------------------HHHHHHHHHHHHHHH
Confidence            99998                   888999998887753

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.27  E-value=3.5e-11  Score=109.27  Aligned_cols=133  Identities=14%  Similarity=0.054  Sum_probs=108.9

Q ss_pred             hhhhHhhccHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh---
Q 010976          129 EEGRSRQRILTFAAKRYANAIE------RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL---  199 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~------~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l---  199 (496)
                      +..+...|++++|+.+|++++.      ..|....++.++|.++..+|+              +++|+.+|++++.+   
T Consensus        33 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~~~   98 (203)
T 3gw4_A           33 GYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN--------------WDAARRCFLEERELLAS   98 (203)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHH
Confidence            3446678999999999999999      445667899999999999999              99999999999999   


Q ss_pred             CCC----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhH
Q 010976          200 CPT----LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV  275 (496)
Q Consensus       200 ~P~----~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~  275 (496)
                      .++    ...+++++|.++..    +|++++|+..+++|+...+..- .......++.++|.++..+|++          
T Consensus        99 ~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~----------  163 (203)
T 3gw4_A           99 LPEDPLAASANAYEVATVALH----FGDLAGARQEYEKSLVYAQQAD-DQVAIACAFRGLGDLAQQEKNL----------  163 (203)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCH----------
T ss_pred             cCccHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHCcCH----------
Confidence            443    35679999999999    9999999977777766644310 0011245679999999999999          


Q ss_pred             HHHHHHHHHHHHhcC
Q 010976          276 RTAISKFRAAIQLQF  290 (496)
Q Consensus       276 ~~Ai~~~~~Al~l~P  290 (496)
                      ++|+..|++++++..
T Consensus       164 ~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          164 LEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998743

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.26  E-value=5.7e-11  Score=98.49  Aligned_cols=100  Identities=11%  Similarity=0.051  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcch
Q 010976          188 EACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVP  267 (496)
Q Consensus       188 ~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~  267 (496)
                      +|+..|+++++++|+++.+++++|.+|..    .|++++|+       ..|+++++++|++..+++++|.+|..+|++  
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~la~~~~~~g~~--   69 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAE----HEQFDAAL-------PHLRAALDFDPTYSVAWKWLGKTLQGQGDR--   69 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHTCH--
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHH----ccCHHHHH-------HHHHHHHHHCCCcHHHHHHHHHHHHHcCCH--
Confidence            58899999999999999999999999999    99999999       899999999999999999999999999999  


Q ss_pred             HHHhhhhHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcch
Q 010976          268 AREKQTIVRTAISKFRAAIQLQFD--FHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       268 A~~~~~~~~~Ai~~~~~Al~l~P~--~~~a~~~lg~~~~~~g~  308 (496)
                              ++|+..|+++++++|+  +......+...+..+++
T Consensus        70 --------~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           70 --------AGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             --------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence                    9999999999999884  56677777777777765

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.25  E-value=1.8e-11  Score=118.18  Aligned_cols=134  Identities=13%  Similarity=0.018  Sum_probs=117.4

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC-C-HHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-L-HDAFYN  209 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~-~-~~a~~~  209 (496)
                      +...|+|++|.+.|+.++...|++. +++.+|.++++.++              |++|+..|++++...+. . ..++++
T Consensus       112 L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r--------------~~dA~~~l~~a~~~~d~~~~~~a~~~  176 (282)
T 4f3v_A          112 EAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAER--------------WTDVIDQVKSAGKWPDKFLAGAAGVA  176 (282)
T ss_dssp             HHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTC--------------HHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCC--------------HHHHHHHHHHhhccCCcccHHHHHHH
Confidence            5567999999999999999999999 99999999999999              99999999988776322 2 458999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHH
Q 010976          210 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN--WN-SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI  286 (496)
Q Consensus       210 lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~--P~-~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al  286 (496)
                      +|.++..    +|++++|+       .+|++++.-.  |. .+.+++++|.++.++|+.          ++|+..|++++
T Consensus       177 LG~al~~----LG~~~eAl-------~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~----------deA~~~l~~a~  235 (282)
T 4f3v_A          177 HGVAAAN----LALFTEAE-------RRLTEANDSPAGEACARAIAWYLAMARRSQGNE----------SAAVALLEWLQ  235 (282)
T ss_dssp             HHHHHHH----TTCHHHHH-------HHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHH
T ss_pred             HHHHHHH----CCCHHHHH-------HHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHH
Confidence            9999999    99999999       7778877544  66 678999999999999999          99999999999


Q ss_pred             HhcCCCHHHHHHHHHH
Q 010976          287 QLQFDFHRAIYNLGTV  302 (496)
Q Consensus       287 ~l~P~~~~a~~~lg~~  302 (496)
                      ..+|+ ..+...|...
T Consensus       236 a~~P~-~~~~~aL~~~  250 (282)
T 4f3v_A          236 TTHPE-PKVAAALKDP  250 (282)
T ss_dssp             HHSCC-HHHHHHHHCT
T ss_pred             hcCCc-HHHHHHHhCC
Confidence            99999 7776666443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.25  E-value=6e-11  Score=98.34  Aligned_cols=100  Identities=13%  Similarity=0.191  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 010976          140 FAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAK  219 (496)
Q Consensus       140 ~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~  219 (496)
                      .|+..|+++++.+|+++.+++++|.+|...|+              +++|+..|+++++++|++..+|+++|.+|..   
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---   65 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQ--------------FDAALPHLRAALDFDPTYSVAWKWLGKTLQG---   65 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH---
Confidence            58899999999999999999999999999999              9999999999999999999999999999999   


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHccC
Q 010976          220 MRGRTKEAEELWKQATKNYEKAVQLNW--NSPQALNNWGLALQELSA  264 (496)
Q Consensus       220 ~~g~~~eA~~~~~~A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~g~  264 (496)
                       +|++++|+       ..|+++++++|  .+..+...+...+..+++
T Consensus        66 -~g~~~~A~-------~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           66 -QGDRAGAR-------QAWESGLAAAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             -HTCHHHHH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             -cCCHHHHH-------HHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence             99999999       67777777666  355666666666665554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.23  E-value=1e-11  Score=101.45  Aligned_cols=86  Identities=15%  Similarity=0.159  Sum_probs=82.9

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010976          155 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA  234 (496)
Q Consensus       155 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A  234 (496)
                      ++.+++.+|.++...|+              +++|+..|+++++++|+++.+++++|.++..    +|++++|+      
T Consensus         3 ~~~~~~~~g~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~------   58 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGL--------------YREAVHCYDQLITAQPQNPVGYSNKAMALIK----LGEYTQAI------   58 (111)
T ss_dssp             HHHHHHHHHHHHHTTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH------
T ss_pred             hHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHH------
Confidence            46789999999999999              9999999999999999999999999999999    99999999      


Q ss_pred             HHHHHHHHhcCCCC------HHHHHHHHHHHHHccCc
Q 010976          235 TKNYEKAVQLNWNS------PQALNNWGLALQELSAI  265 (496)
Q Consensus       235 ~~~~~~Al~l~P~~------~~a~~~lg~~l~~~g~~  265 (496)
                       ..|+++++++|++      ..+++++|.++..+|++
T Consensus        59 -~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~   94 (111)
T 2l6j_A           59 -QMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSV   94 (111)
T ss_dssp             -HHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCC
T ss_pred             -HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhH
Confidence             8999999999999      99999999999999998

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.23  E-value=2.7e-10  Score=118.39  Aligned_cols=134  Identities=17%  Similarity=0.105  Sum_probs=107.4

Q ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 010976          137 ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISD  216 (496)
Q Consensus       137 ~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~  216 (496)
                      ..+.+..+++.+...+|.   +++++|.+|...|.           ..++++|+..|++++...|..+..++++|.+|..
T Consensus       160 ~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~-----------~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~  225 (452)
T 3e4b_A          160 HLDDVERICKAALNTTDI---CYVELATVYQKKQQ-----------PEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGD  225 (452)
T ss_dssp             GHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCC-----------cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            455566666666655554   89999999999881           1129999999999999999999999999999976


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH
Q 010976          217 RAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ---ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH  293 (496)
Q Consensus       217 ~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~---~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~  293 (496)
                      .....+++++|+       .+|+++.   |+++.++++||.+|.   ..+++          ++|+.+|+++++.  +++
T Consensus       226 g~~~~~d~~~A~-------~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~----------~~A~~~~~~Aa~~--g~~  283 (452)
T 3e4b_A          226 ATLGTPDEKTAQ-------ALLEKIA---PGYPASWVSLAQLLYDFPELGDV----------EQMMKYLDNGRAA--DQP  283 (452)
T ss_dssp             GGGSSCCHHHHH-------HHHHHHG---GGSTHHHHHHHHHHHHSGGGCCH----------HHHHHHHHHHHHT--TCH
T ss_pred             CCCCCCCHHHHH-------HHHHHHc---CCCHHHHHHHHHHHHhCCCCCCH----------HHHHHHHHHHHHC--CCH
Confidence            000016888888       7888887   899999999999944   45555          9999999999864  589


Q ss_pred             HHHHHHHHHHHHcc
Q 010976          294 RAIYNLGTVLYGLA  307 (496)
Q Consensus       294 ~a~~~lg~~~~~~g  307 (496)
                      .++++||.+|. .|
T Consensus       284 ~A~~~Lg~~y~-~G  296 (452)
T 3e4b_A          284 RAELLLGKLYY-EG  296 (452)
T ss_dssp             HHHHHHHHHHH-HC
T ss_pred             HHHHHHHHHHH-cC
Confidence            99999999998 55

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.23  E-value=6.5e-10  Score=125.82  Aligned_cols=208  Identities=14%  Similarity=0.018  Sum_probs=156.3

Q ss_pred             ChhhhhhcHHHHHHHHHHhhccch--hhhH-hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcch
Q 010976          106 TPHQLAEQNNAAMELINSVTGVDE--EGRS-RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSK  182 (496)
Q Consensus       106 ~~~~~~~~~~~A~~~~~~~l~~~~--~~~~-~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~  182 (496)
                      ......+.+++|..+|+++-....  ..+. ..+++++|++.++++     +.+.+|+.+|.++...|+           
T Consensus      1057 ~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~----------- 1120 (1630)
T 1xi4_A         1057 NIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGM----------- 1120 (1630)
T ss_pred             HHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCC-----------
Confidence            344568899999999998753331  1122 457777777777754     779999999999999999           


Q ss_pred             hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------HHHH
Q 010976          183 DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK----------------------NYEK  240 (496)
Q Consensus       183 ~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~----------------------~~~~  240 (496)
                         +++|+.+|.+|     +++..|+++|.++..    .|++++|++.|..|++                      .++.
T Consensus      1121 ---~kEAIdsYiKA-----dD~say~eVa~~~~~----lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~ 1188 (1630)
T 1xi4_A         1121 ---VKEAIDSYIKA-----DDPSSYMEVVQAANT----SGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEE 1188 (1630)
T ss_pred             ---HHHHHHHHHhc-----CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHH
Confidence               99999999887     899999999999999    9999999988876552                      1111


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHccCcchH----------------HHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010976          241 AVQLNWNSPQALNNWGLALQELSAIVPA----------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY  304 (496)
Q Consensus       241 Al~l~P~~~~a~~~lg~~l~~~g~~~~A----------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~  304 (496)
                      .+  +..+...+.++|..+...|+|++|                +-++|++++|++.+++|     .+..+|.+.+.++.
T Consensus      1189 fI--~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acv 1261 (1630)
T 1xi4_A         1189 FI--NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV 1261 (1630)
T ss_pred             HH--hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHh
Confidence            11  233456677899999999999888                23678999999999998     56688888888887


Q ss_pred             HcchhHHhccCCCCCCCCCcHH------------HHHHHHHHHHHHHhcCCcHHHHH
Q 010976          305 GLAEDTLRTGGTVNPREVSPNE------------LYSQSAIYIAAAHALKPSYSVYS  349 (496)
Q Consensus       305 ~~g~~~~a~~~~~~~~~~~~~~------------~~~~A~~~~~~a~~l~p~~~~y~  349 (496)
                      ..|+...+....+. ....+..            .|.+|+.++++++.+++++..+.
T Consensus      1262 e~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmf 1317 (1630)
T 1xi4_A         1262 DGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 1317 (1630)
T ss_pred             hhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHH
Confidence            77765554433322 2222221            36789999999999999887444

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.22  E-value=7.1e-11  Score=102.11  Aligned_cols=134  Identities=12%  Similarity=-0.014  Sum_probs=110.9

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPEDY------DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT  202 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~------~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~  202 (496)
                      +..+...|++++|+.+|++++++.+...      .++.++|.++..+|+              +++|+.+|++++.+.+.
T Consensus        16 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~a~~~~~~   81 (164)
T 3ro3_A           16 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE--------------FETASEYYKKTLLLARQ   81 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHH
Confidence            3446678999999999999999865432      589999999999999              99999999999998655


Q ss_pred             C------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHH
Q 010976          203 L------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVR  276 (496)
Q Consensus       203 ~------~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~  276 (496)
                      .      ..+++++|.++..    +|++++|++.+++++..+.+. ...+....++.++|.++..+|++          +
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~----------~  146 (164)
T 3ro3_A           82 LKDRAVEAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSLGNAYTALGNH----------D  146 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCH----------H
T ss_pred             hCCcHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHc-cchHhHHHHHHHHHHHHHHccCH----------H
Confidence            3      6789999999999    999999997777777665432 11123467899999999999999          9


Q ss_pred             HHHHHHHHHHHhcCC
Q 010976          277 TAISKFRAAIQLQFD  291 (496)
Q Consensus       277 ~Ai~~~~~Al~l~P~  291 (496)
                      +|+..|++++++...
T Consensus       147 ~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          147 QAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999987654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.20  E-value=1.4e-10  Score=91.06  Aligned_cols=85  Identities=32%  Similarity=0.411  Sum_probs=80.7

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010976          154 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ  233 (496)
Q Consensus       154 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~  233 (496)
                      .++.+++.+|.++...|+              +++|+..|++++.++|++..+++++|.++..    .|++++|+     
T Consensus         7 ~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-----   63 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPNNAEAWYNLGNAYYK----QGDYDEAI-----   63 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-----
T ss_pred             ccHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----HhhHHHHH-----
Confidence            467899999999999999              9999999999999999999999999999999    99999999     


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 010976          234 ATKNYEKAVQLNWNSPQALNNWGLALQELS  263 (496)
Q Consensus       234 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g  263 (496)
                        ..|+++++++|++..++.++|.++..+|
T Consensus        64 --~~~~~a~~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           64 --EYYQKALELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             --HHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             --HHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence              8999999999999999999999998765

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.19  E-value=1.5e-10  Score=90.95  Aligned_cols=85  Identities=28%  Similarity=0.325  Sum_probs=80.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHH
Q 010976          202 TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISK  281 (496)
Q Consensus       202 ~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~  281 (496)
                      .+..+++++|.++..    .|++++|+       ..|+++++++|++..+++++|.++...|++          ++|+..
T Consensus         7 ~~~~~~~~la~~~~~----~~~~~~A~-------~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~   65 (91)
T 1na3_A            7 NSAEAWYNLGNAYYK----QGDYDEAI-------EYYQKALELDPNNAEAWYNLGNAYYKQGDY----------DEAIEY   65 (91)
T ss_dssp             HHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHH
T ss_pred             ccHHHHHHHHHHHHH----ccCHHHHH-------HHHHHHHhcCCCCHHHHHHHHHHHHHHhhH----------HHHHHH
Confidence            467899999999999    99999999       899999999999999999999999999999          999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976          282 FRAAIQLQFDFHRAIYNLGTVLYGLA  307 (496)
Q Consensus       282 ~~~Al~l~P~~~~a~~~lg~~~~~~g  307 (496)
                      |+++++++|++..++.++|.++..+|
T Consensus        66 ~~~a~~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           66 YQKALELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999998764

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.15  E-value=2.9e-09  Score=106.01  Aligned_cols=166  Identities=14%  Similarity=-0.007  Sum_probs=130.3

Q ss_pred             HHHHHhCCCCHHHHH--HHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCC
Q 010976          146 ANAIERNPEDYDALY--NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGR  223 (496)
Q Consensus       146 ~~al~~~P~~~~a~~--~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~  223 (496)
                      +++...-|.++++|-  ..|..+...++           ...+.+|+.+|++|++++|+++.+|..++.+|..++...+.
T Consensus       184 ~r~~~~~p~~~~Aydl~Lra~~~l~~~~-----------~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~  252 (372)
T 3ly7_A          184 ETLQKILPHRGALLTNFYQAHDYLLHGD-----------DKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPL  252 (372)
T ss_dssp             HHHHHHSCSSGGGHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCC
Confidence            345566788777654  45666666544           23378999999999999999999999999999764433322


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010976          224 TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL  303 (496)
Q Consensus       224 ~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~  303 (496)
                      .......+.+++.. ..++..+|.++.++..++.++...|++          ++|+..+++|++++|+ ..++..+|.++
T Consensus       253 ~~~~~~~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~----------d~A~~~l~rAl~Ln~s-~~a~~llG~~~  320 (372)
T 3ly7_A          253 DEKQLAALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKT----------DESYQAINTGIDLEMS-WLNYVLLGKVY  320 (372)
T ss_dssp             CHHHHHHHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHhcCCC-HHHHHHHHHHH
Confidence            23333444445452 245678899999999999999999999          9999999999999975 78889999999


Q ss_pred             HHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 010976          304 YGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALR  353 (496)
Q Consensus       304 ~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~  353 (496)
                      ...|+                   +.+|.+.|.+|+.++|....|...-.
T Consensus       321 ~~~G~-------------------~~eA~e~~~~AlrL~P~~~t~~~~~~  351 (372)
T 3ly7_A          321 EMKGM-------------------NREAADAYLTAFNLRPGANTLYWIEN  351 (372)
T ss_dssp             HHTTC-------------------HHHHHHHHHHHHHHSCSHHHHHHHHH
T ss_pred             HHCCC-------------------HHHHHHHHHHHHhcCCCcChHHHHhC
Confidence            99999                   89999999999999999986655443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.13  E-value=2.5e-10  Score=93.07  Aligned_cols=87  Identities=15%  Similarity=0.166  Sum_probs=81.7

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHH
Q 010976          203 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKF  282 (496)
Q Consensus       203 ~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~  282 (496)
                      ++.+++++|.++..    .|++++|+       ..|+++++++|+++.+++++|.++..+|++          ++|+..|
T Consensus         3 ~~~~~~~~g~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~   61 (111)
T 2l6j_A            3 QFEKQKEQGNSLFK----QGLYREAV-------HCYDQLITAQPQNPVGYSNKAMALIKLGEY----------TQAIQMC   61 (111)
T ss_dssp             HHHHHHHHHHHHHT----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHH
T ss_pred             hHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHhcCCCCHHHHHHHHHHHHHhcCH----------HHHHHHH
Confidence            46789999999999    99999999       899999999999999999999999999999          9999999


Q ss_pred             HHHHHhcCCC------HHHHHHHHHHHHHcchhH
Q 010976          283 RAAIQLQFDF------HRAIYNLGTVLYGLAEDT  310 (496)
Q Consensus       283 ~~Al~l~P~~------~~a~~~lg~~~~~~g~~~  310 (496)
                      +++++++|++      ..+++++|.++..+|+..
T Consensus        62 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (111)
T 2l6j_A           62 QQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQ   95 (111)
T ss_dssp             HHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHh
Confidence            9999999999      999999999999998643

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.12  E-value=1e-09  Score=107.24  Aligned_cols=161  Identities=12%  Similarity=-0.021  Sum_probs=133.9

Q ss_pred             hhhHhhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC----C
Q 010976          130 EGRSRQRILTFAAKRYANAIERNP--EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----L  203 (496)
Q Consensus       130 ~~~~~~g~~~~Ai~~~~~al~~~P--~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~----~  203 (496)
                      ..+...|++++|+..+.+.|..+|  ++.+++..++.++..+|+              ++.|.+.++++.+.+|+    +
T Consensus       108 ~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r--------------~d~A~k~l~~~~~~~~d~~~~~  173 (310)
T 3mv2_B          108 TAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN--------------VSTASTIFDNYTNAIEDTVSGD  173 (310)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHhcCccccccc
Confidence            345667999999999999999997  899999999999999999              99999999999999994    3


Q ss_pred             HHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCcchHHHhhhhHHHHH
Q 010976          204 HDAFYNWAIAISDRAKMRG--RTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSAIVPAREKQTIVRTAI  279 (496)
Q Consensus       204 ~~a~~~lg~~~~~~~~~~g--~~~eA~~~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai  279 (496)
                      -....+++.++..++  .|  ++.+|.       ..|+++.+..|+  ....+++   ++..+|++          ++|.
T Consensus       174 d~~l~~Laea~v~l~--~g~~~~q~A~-------~~f~El~~~~p~~~~~~lLln---~~~~~g~~----------~eAe  231 (310)
T 3mv2_B          174 NEMILNLAESYIKFA--TNKETATSNF-------YYYEELSQTFPTWKTQLGLLN---LHLQQRNI----------AEAQ  231 (310)
T ss_dssp             HHHHHHHHHHHHHHH--HTCSTTTHHH-------HHHHHHHTTSCSHHHHHHHHH---HHHHHTCH----------HHHH
T ss_pred             hHHHHHHHHHHHHHH--hCCccHHHHH-------HHHHHHHHhCCCcccHHHHHH---HHHHcCCH----------HHHH
Confidence            445566655533311  45  788888       899998888886  3445555   89999999          9999


Q ss_pred             HHHHHHHHh----------cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHH
Q 010976          280 SKFRAAIQL----------QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV  347 (496)
Q Consensus       280 ~~~~~Al~l----------~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~  347 (496)
                      ..++++++.          +|+++.++.|+..+...+|+                     .+..++.++.+.+|+++.
T Consensus       232 ~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk---------------------~a~~l~~qL~~~~P~hp~  288 (310)
T 3mv2_B          232 GIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL---------------------DTEDLTNQLVKLDHEHAF  288 (310)
T ss_dssp             HHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC---------------------TTHHHHHHHHHTTCCCHH
T ss_pred             HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh---------------------HHHHHHHHHHHhCCCChH
Confidence            999988887          59999999999999999996                     456789999999999994

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.11  E-value=3.8e-09  Score=119.69  Aligned_cols=170  Identities=15%  Similarity=0.113  Sum_probs=135.0

Q ss_pred             hhhcHHHHHHHHHHhhccc-----hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhh
Q 010976          110 LAEQNNAAMELINSVTGVD-----EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDA  184 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~l~~~-----~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~  184 (496)
                      ..++++.|.+++.++....     +..+...|++++|+..|.++     ++++.|..+|.++.++|+             
T Consensus      1088 ~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGk------------- 1149 (1630)
T 1xi4_A         1088 HIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGN------------- 1149 (1630)
T ss_pred             HHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCC-------------
Confidence            4556666666665443322     45566779999999999886     899999999999999999             


Q ss_pred             hHHHHHHHHHHHHHhCCC---------------------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH----
Q 010976          185 LLEEACKKYDEATRLCPT---------------------------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQ----  233 (496)
Q Consensus       185 ~~~~A~~~~~~Al~l~P~---------------------------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~----  233 (496)
                       |++|+++|..|.+..++                           +...+.++|..+..    .|+|++|+..|.+    
T Consensus      1150 -yEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~----eg~YeeA~~~Y~kA~ny 1224 (1630)
T 1xi4_A         1150 -WEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYD----EKMYDAAKLLYNNVSNF 1224 (1630)
T ss_pred             -HHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhhHH
Confidence             99999999887765533                           23356778888888    9999999987754    


Q ss_pred             ---------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchH--------------------HHhhhhHHHH
Q 010976          234 ---------------ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA--------------------REKQTIVRTA  278 (496)
Q Consensus       234 ---------------A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A--------------------~~~~~~~~~A  278 (496)
                                     |++++++|     ++..+|.+.+.++...|++..|                    +++.|.+++|
T Consensus      1225 ~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEA 1299 (1630)
T 1xi4_A         1225 GRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEEL 1299 (1630)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHH
Confidence                           66666666     5678888888888777777666                    4478999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976          279 ISKFRAAIQLQFDFHRAIYNLGTVLYGLA  307 (496)
Q Consensus       279 i~~~~~Al~l~P~~~~a~~~lg~~~~~~g  307 (496)
                      +..|+++|.+++.+...+..||.+|.+-.
T Consensus      1300 I~LlE~aL~LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A         1300 ITMLEAALGLERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred             HHHHHHHhccChhHhHHHHHHHHHHHhCC
Confidence            99999999999999999999999998765

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.08  E-value=5.9e-10  Score=90.31  Aligned_cols=90  Identities=17%  Similarity=0.235  Sum_probs=74.0

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 010976          151 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL  230 (496)
Q Consensus       151 ~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~  230 (496)
                      .+|+++.+++++|.+|..+|+              +++|+..|+++++++|++..+|+++|.+|..    +|++++|+  
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~--   61 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDN--------------ASRALALFEELVETDPDYVGTYYHLGKLYER----LDRTDDAI--   61 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHH--
T ss_pred             CCccCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHH--
Confidence            479999999999999999999              9999999999999999999999999999999    99999999  


Q ss_pred             HHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHccCc
Q 010976          231 WKQATKNYEKAVQLNW--NSPQALNNWGLALQELSAI  265 (496)
Q Consensus       231 ~~~A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~g~~  265 (496)
                           ..|++++++.|  .+......+..++...+..
T Consensus        62 -----~~~~~al~l~~~~~~~~~~~~l~~~l~~~~~~   93 (100)
T 3ma5_A           62 -----DTYAQGIEVAREEGTQKDLSELQDAKLKAEGL   93 (100)
T ss_dssp             -----HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTT
T ss_pred             -----HHHHHHHhhhhcCCchhHHHHHHHHHHHcccc
Confidence                 66666666654  3455556666666555543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.05  E-value=5.7e-10  Score=116.82  Aligned_cols=129  Identities=12%  Similarity=-0.065  Sum_probs=111.3

Q ss_pred             hHhhccHHHHHHHHHHHHHhC-----C---CCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh----
Q 010976          132 RSRQRILTFAAKRYANAIERN-----P---EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL----  199 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~-----P---~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l----  199 (496)
                      +..+|+|++|+.+|++++++.     |   +...++.+||.+|..+|+              |++|+.+|+++|++    
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~--------------~~eA~~~~~~aL~i~~~~  384 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA--------------YEEASHYARRMVDGYMKL  384 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHHHHHH
Confidence            446899999999999999863     3   445789999999999999              99999999999987    


Q ss_pred             ----CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCcchHHHhhhh
Q 010976          200 ----CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQTI  274 (496)
Q Consensus       200 ----~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~~A~~~~~~  274 (496)
                          +|+.+..++|||.+|..    +|++++|+..|++|++.+++.+.-+ |.-...+.+++.++.+++++         
T Consensus       385 lG~~Hp~~a~~l~nLa~~~~~----~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~---------  451 (490)
T 3n71_A          385 YHHNNAQLGMAVMRAGLTNWH----AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMF---------  451 (490)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHH---------
T ss_pred             cCCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH---------
Confidence                44456789999999999    9999999999999999999887443 55566778999999999999         


Q ss_pred             HHHHHHHHHHHHHh
Q 010976          275 VRTAISKFRAAIQL  288 (496)
Q Consensus       275 ~~~Ai~~~~~Al~l  288 (496)
                       ++|...|+++.+.
T Consensus       452 -~~ae~~~~~~~~~  464 (490)
T 3n71_A          452 -RQNEFMYHKMREA  464 (490)
T ss_dssp             -HHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHH
Confidence             9999999998654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.05  E-value=4.3e-10  Score=90.20  Aligned_cols=92  Identities=23%  Similarity=0.292  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 010976          159 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD-AFYNWAIAISDRAKMRGRTKEAEELWKQATKN  237 (496)
Q Consensus       159 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~-a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~  237 (496)
                      .+.+|.++...|+              +++|+..|+++++++|++.. +++++|.+|..    +|++++|+       ..
T Consensus         3 ~~~~a~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~----~~~~~~A~-------~~   57 (99)
T 2kc7_A            3 QLKTIKELINQGD--------------IENALQALEEFLQTEPVGKDEAYYLMGNAYRK----LGDWQKAL-------NN   57 (99)
T ss_dssp             THHHHHHHHHHTC--------------HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH----HTCHHHHH-------HH
T ss_pred             HHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH----cCCHHHHH-------HH
Confidence            3678999999999              99999999999999999999 99999999999    99999999       89


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH
Q 010976          238 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH  293 (496)
Q Consensus       238 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~  293 (496)
                      |+++++++|++..++++        +.+          .+++..|++++..+|++.
T Consensus        58 ~~~al~~~p~~~~~~~~--------~~~----------~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           58 YQSAIELNPDSPALQAR--------KMV----------MDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHCTTSTHHHHH--------HHH----------HHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHhcCCCcHHHHHH--------HHH----------HHHHHHHHHHhccCcccc
Confidence            99999999999998865        444          899999999998888764

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.04  E-value=1.3e-09  Score=88.30  Aligned_cols=89  Identities=13%  Similarity=0.100  Sum_probs=76.9

Q ss_pred             hCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHH
Q 010976          199 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA  278 (496)
Q Consensus       199 l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~A  278 (496)
                      .+|+++.+++++|.+|..    +|++++|+       ..|+++++++|+++.+|+++|.+|..+|++          ++|
T Consensus         2 ~~p~~~~~~~~lg~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~~A   60 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLK----HDNASRAL-------ALFEELVETDPDYVGTYYHLGKLYERLDRT----------DDA   60 (100)
T ss_dssp             ---CCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCTHHHHHHHHHHHHTTCH----------HHH
T ss_pred             CCccCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHcCCH----------HHH
Confidence            479999999999999999    99999999       899999999999999999999999999999          999


Q ss_pred             HHHHHHHHHhcCC--CHHHHHHHHHHHHHcch
Q 010976          279 ISKFRAAIQLQFD--FHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       279 i~~~~~Al~l~P~--~~~a~~~lg~~~~~~g~  308 (496)
                      +..|++++++.|.  +......+..++...+.
T Consensus        61 ~~~~~~al~l~~~~~~~~~~~~l~~~l~~~~~   92 (100)
T 3ma5_A           61 IDTYAQGIEVAREEGTQKDLSELQDAKLKAEG   92 (100)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhcCCchhHHHHHHHHHHHccc
Confidence            9999999999764  45666666666665553

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.03  E-value=1.9e-09  Score=109.98  Aligned_cols=163  Identities=5%  Similarity=-0.032  Sum_probs=132.7

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDY-----------------DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYD  194 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~-----------------~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  194 (496)
                      +...|+|++|++.|.++++.+|...                 .++.++|.+|...|+              +++|++.|+
T Consensus        14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~--------------~~~a~~~~~   79 (434)
T 4b4t_Q           14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA--------------KDKLREFIP   79 (434)
T ss_dssp             HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC--------------HHHHHHHHH
Confidence            3457999999999999999988653                 468999999999999              999999999


Q ss_pred             HHHHhCCCCH------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchH
Q 010976          195 EATRLCPTLH------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA  268 (496)
Q Consensus       195 ~Al~l~P~~~------~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A  268 (496)
                      +++.+.+...      .++.++|.++..    .|++++|+..+++++....+. ...+....++.++|.+|...|++   
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~---  151 (434)
T 4b4t_Q           80 HSTEYMMQFAKSKTVKVLKTLIEKFEQV----PDSLDDQIFVCEKSIEFAKRE-KRVFLKHSLSIKLATLHYQKKQY---  151 (434)
T ss_dssp             HTHHHHHTSCHHHHHHHHHHHHHHHCSC----CSCHHHHHHHHHHHHHHHHHS-SCCSSHHHHHHHHHHHHHHHTCH---
T ss_pred             HHHHHHHHccchHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHccCh---
Confidence            9999866543      345677888877    999999997777776665532 33445578999999999999999   


Q ss_pred             HHhhhhHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 010976          269 REKQTIVRTAISKFRAAIQL------QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK  342 (496)
Q Consensus       269 ~~~~~~~~~Ai~~~~~Al~l------~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~  342 (496)
                             .+|+..+++++..      .+....++.++|.+|..+|+                   |..|..+|.+++.+.
T Consensus       152 -------~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~A~~~~~~al~~~  205 (434)
T 4b4t_Q          152 -------KDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRN-------------------LAKSKASLTAARTAA  205 (434)
T ss_dssp             -------HHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCc-------------------HHHHHHHHHHHHHHh
Confidence                   9999999999886      34456899999999999998                   777777777776553

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.03  E-value=5.8e-09  Score=89.92  Aligned_cols=126  Identities=18%  Similarity=0.142  Sum_probs=103.6

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  214 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~  214 (496)
                      .+++++|+.+|+++.+....  .+.  +|.+|.....              +++|+++|+++.+.  .++.++++||.+|
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~--------------~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y   67 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEM--FGC--LSLVSNSQIN--------------KQKLFQYLSKACEL--NSGNGCRFLGDFY   67 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSC--------------HHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCC--------------HHHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence            47899999999999998744  444  9999998888              99999999999987  7899999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCcchHHHhhhhHHHHHHHHHHHHHhcC
Q 010976          215 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE----LSAIVPAREKQTIVRTAISKFRAAIQLQF  290 (496)
Q Consensus       215 ~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P  290 (496)
                      ..-.-..+++++|+       .+|+++.+.  .++.++++||.+|..    .+++          ++|+.+|++|.+.  
T Consensus        68 ~~G~g~~~d~~~A~-------~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~----------~~A~~~~~~Aa~~--  126 (138)
T 1klx_A           68 ENGKYVKKDLRKAA-------QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNE----------KQAVKTFEKACRL--  126 (138)
T ss_dssp             HHCSSSCCCHHHHH-------HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH----------HHHHHHHHHHHHT--
T ss_pred             HcCCCCCccHHHHH-------HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCH----------HHHHHHHHHHHHC--
Confidence            75100135777777       778887776  789999999999999    7787          9999999999987  


Q ss_pred             CCHHHHHHHHH
Q 010976          291 DFHRAIYNLGT  301 (496)
Q Consensus       291 ~~~~a~~~lg~  301 (496)
                      .++.+.++|+.
T Consensus       127 g~~~A~~~l~~  137 (138)
T 1klx_A          127 GSEDACGILNN  137 (138)
T ss_dssp             TCHHHHHHC--
T ss_pred             CCHHHHHHHhh
Confidence            56777777764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.01  E-value=1.8e-09  Score=113.04  Aligned_cols=119  Identities=13%  Similarity=-0.082  Sum_probs=100.4

Q ss_pred             HHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010976          162 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ  233 (496)
Q Consensus       162 lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~  233 (496)
                      .+..+..+|+              |++|+..|++++++        +|+....+.+||.+|..    +|+|++|+.+|++
T Consensus       315 ~a~~~~~qg~--------------~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA~~~~~~  376 (490)
T 3n71_A          315 KIDKARSEGL--------------YHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY----LQAYEEASHYARR  376 (490)
T ss_dssp             HHHHHHTTTC--------------HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred             HHHHHHhCCC--------------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----hcCHHHHHHHHHH
Confidence            3445667788              99999999999997        34445789999999999    9999999999999


Q ss_pred             HHHHHHHHHhc-CCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh-----cCCCH---HHHHHHHHHHH
Q 010976          234 ATKNYEKAVQL-NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL-----QFDFH---RAIYNLGTVLY  304 (496)
Q Consensus       234 A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l-----~P~~~---~a~~~lg~~~~  304 (496)
                      |++.+++.+.- +|+-...++|||.+|..+|++          ++|+..|++|+++     .|+++   ....+|+.++.
T Consensus       377 aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~----------~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~  446 (490)
T 3n71_A          377 MVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHI----------EVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEM  446 (490)
T ss_dssp             HHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            99999988743 355677899999999999999          9999999999986     56665   56678888888


Q ss_pred             Hcch
Q 010976          305 GLAE  308 (496)
Q Consensus       305 ~~g~  308 (496)
                      .++.
T Consensus       447 e~~~  450 (490)
T 3n71_A          447 ELRM  450 (490)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8887

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.00  E-value=6.8e-09  Score=103.34  Aligned_cols=151  Identities=15%  Similarity=0.053  Sum_probs=114.0

Q ss_pred             HHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHH
Q 010976          116 AAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDE  195 (496)
Q Consensus       116 ~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  195 (496)
                      .|.++|-++......  .....+.+|+.+|++|++++|+++.+|..++.+|......   .............++.. ..
T Consensus       195 ~Aydl~Lra~~~l~~--~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~---~~~~~~~~~~l~~a~~a-~~  268 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLH--GDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQ---HPLDEKQLAALNTEIDN-IV  268 (372)
T ss_dssp             GGHHHHHHHHHHHHH--CSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcc---CCCchhhHHHHHHHHHH-HH
Confidence            455666555444321  1246679999999999999999999999999988743320   00111111122233331 13


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhH
Q 010976          196 ATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV  275 (496)
Q Consensus       196 Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~  275 (496)
                      ++.++|.++.++..++.++..    .|++++|+       ..+++|+.++| +..+|..+|.++...|++          
T Consensus       269 a~~~~~~~a~~~~alal~~l~----~gd~d~A~-------~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~----------  326 (372)
T 3ly7_A          269 TLPELNNLSIIYQIKAVSALV----KGKTDESY-------QAINTGIDLEM-SWLNYVLLGKVYEMKGMN----------  326 (372)
T ss_dssp             TCGGGTTCHHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHCC-CHHHHHHHHHHHHHTTCH----------
T ss_pred             hcccCCcCHHHHHHHHHHHHh----CCCHHHHH-------HHHHHHHhcCC-CHHHHHHHHHHHHHCCCH----------
Confidence            446789999999999999988    99999999       89999999997 578889999999999999          


Q ss_pred             HHHHHHHHHHHHhcCCCHH
Q 010976          276 RTAISKFRAAIQLQFDFHR  294 (496)
Q Consensus       276 ~~Ai~~~~~Al~l~P~~~~  294 (496)
                      ++|++.|++|+.++|....
T Consensus       327 ~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          327 REAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HHHHHHHHHHHHHSCSHHH
T ss_pred             HHHHHHHHHHHhcCCCcCh
Confidence            9999999999999998753

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.97  E-value=3.8e-09  Score=107.78  Aligned_cols=165  Identities=8%  Similarity=-0.073  Sum_probs=127.4

Q ss_pred             chhhhHhhccHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhC-
Q 010976          128 DEEGRSRQRILTFAAKRYANAIERNPEDY------DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-  200 (496)
Q Consensus       128 ~~~~~~~~g~~~~Ai~~~~~al~~~P~~~------~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~-  200 (496)
                      .+..+..+|++++|+.+|.+++...+...      .+...+|.++...|+              +++|+.+|++++... 
T Consensus        61 l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~a~~~~~~~~~~~~  126 (434)
T 4b4t_Q           61 LGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDS--------------LDDQIFVCEKSIEFAK  126 (434)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSC--------------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHHHH
Confidence            34557778999999999999998876543      345667888888888              999999999999873 


Q ss_pred             -----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhH
Q 010976          201 -----PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV  275 (496)
Q Consensus       201 -----P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~  275 (496)
                           +..+.++.++|.+|..    .|++.+|+..+++++..+.+. .-.+....++.++|.+|..+|++          
T Consensus       127 ~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------  191 (434)
T 4b4t_Q          127 REKRVFLKHSLSIKLATLHYQ----KKQYKDSLALINDLLREFKKL-DDKPSLVDVHLLESKVYHKLRNL----------  191 (434)
T ss_dssp             HSSCCSSHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTS-SCSTHHHHHHHHHHHHHHHTTCH----------
T ss_pred             HhCccHHHHHHHHHHHHHHHH----ccChHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHhCcH----------
Confidence                 3347889999999999    999999996666555443321 12344678999999999999999          


Q ss_pred             HHHHHHHHHHHHhcCC---C----HHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHh
Q 010976          276 RTAISKFRAAIQLQFD---F----HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHA  340 (496)
Q Consensus       276 ~~Ai~~~~~Al~l~P~---~----~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~  340 (496)
                      ++|...|++++.+.+.   .    ...+.++|.++...++                   |..|..+|.+++.
T Consensus       192 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------------------y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          192 AKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD-------------------YKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC-------------------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh-------------------HHHHHHHHHHHHH
Confidence            9999999999987532   2    3456667777777776                   7777777777665

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.95  E-value=1.4e-08  Score=97.23  Aligned_cols=178  Identities=12%  Similarity=0.019  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CCC------CCCCCcchhhhHHHHHHHHHHHHHh------------
Q 010976          139 TFAAKRYANAIERNPEDYDALYNWALVLQESAD-NVS------LDSTSPSKDALLEEACKKYDEATRL------------  199 (496)
Q Consensus       139 ~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~-~~~------~~~~~~~~~~~~~~A~~~~~~Al~l------------  199 (496)
                      -..+.+++..+..+|++...+...|..|..-+. +++      +......+...+..|.+.|.++...            
T Consensus        49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~~  128 (301)
T 3u64_A           49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPGF  128 (301)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTH
T ss_pred             cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence            446778888899999998777766666654332 110      0001112223345555555554432            


Q ss_pred             -------------------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Q 010976          200 -------------------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLA  258 (496)
Q Consensus       200 -------------------~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~  258 (496)
                                         +|++.++++..|++....+...+.--.|+....+|...+++++++||+  +..+|..+|.+
T Consensus       129 ~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~l  208 (301)
T 3u64_A          129 TREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKF  208 (301)
T ss_dssp             HHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred             HHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHH
Confidence                               456678889999888764333222235677777888999999999999  67799999999


Q ss_pred             HHHc-----cCcchHHHhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHc-chhHHhccCCCCCCCCCcHHHHHHH
Q 010976          259 LQEL-----SAIVPAREKQTIVRTAISKFRAAIQLQFDF-HRAIYNLGTVLYGL-AEDTLRTGGTVNPREVSPNELYSQS  331 (496)
Q Consensus       259 l~~~-----g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~-~~a~~~lg~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~A  331 (496)
                      |...     |+.          ++|..+|++||+++|+. ..+++.+|..+... |+                   +..+
T Consensus       209 Y~~vPp~~gGd~----------ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd-------------------~~~a  259 (301)
T 3u64_A          209 YAAAPESFGGGM----------EKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN-------------------RAGF  259 (301)
T ss_dssp             HHHSCTTTTCCH----------HHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC-------------------HHHH
T ss_pred             HHhCCCccCCCH----------HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC-------------------HHHH
Confidence            9995     888          99999999999999975 99999999999885 77                   7889


Q ss_pred             HHHHHHHHhcCCcH
Q 010976          332 AIYIAAAHALKPSY  345 (496)
Q Consensus       332 ~~~~~~a~~l~p~~  345 (496)
                      ..+++++++.+|..
T Consensus       260 ~~~L~kAL~a~p~~  273 (301)
T 3u64_A          260 DEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHCCGGG
T ss_pred             HHHHHHHHcCCCCC
Confidence            99999999998874

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.91  E-value=2.5e-09  Score=85.67  Aligned_cols=71  Identities=18%  Similarity=0.160  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH
Q 010976          207 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ-ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA  285 (496)
Q Consensus       207 ~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~-a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A  285 (496)
                      .+++|.++..    .|++++|+       ..|+++++.+|+++. +++++|.+|..+|++          ++|+..|+++
T Consensus         3 ~~~~a~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~a   61 (99)
T 2kc7_A            3 QLKTIKELIN----QGDIENAL-------QALEEFLQTEPVGKDEAYYLMGNAYRKLGDW----------QKALNNYQSA   61 (99)
T ss_dssp             THHHHHHHHH----HTCHHHHH-------HHHHHHHHHCSSTHHHHHHHHHHHHHHHTCH----------HHHHHHHHHH
T ss_pred             HHHHHHHHHH----cCCHHHHH-------HHHHHHHHHCCCcHHHHHHHHHHHHHHcCCH----------HHHHHHHHHH
Confidence            3678889988    99999999       899999999999999 999999999999999          9999999999


Q ss_pred             HHhcCCCHHHHHH
Q 010976          286 IQLQFDFHRAIYN  298 (496)
Q Consensus       286 l~l~P~~~~a~~~  298 (496)
                      ++++|++..++++
T Consensus        62 l~~~p~~~~~~~~   74 (99)
T 2kc7_A           62 IELNPDSPALQAR   74 (99)
T ss_dssp             HHHCTTSTHHHHH
T ss_pred             HhcCCCcHHHHHH
Confidence            9999999988844

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.90  E-value=4.1e-08  Score=84.53  Aligned_cols=117  Identities=18%  Similarity=0.147  Sum_probs=99.3

Q ss_pred             hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010976          182 KDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE  261 (496)
Q Consensus       182 ~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~  261 (496)
                      ..+++++|++.|+++.+.....  +.  +|.+|..    .+..++|+       .+|+++.+.  .++.++++||.+|..
T Consensus         7 ~~~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~----g~~~~~A~-------~~~~~Aa~~--g~~~a~~~Lg~~y~~   69 (138)
T 1klx_A            7 VKKDLKKAIQYYVKACELNEMF--GC--LSLVSNS----QINKQKLF-------QYLSKACEL--NSGNGCRFLGDFYEN   69 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTT--HH--HHHHTCT----TSCHHHHH-------HHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHcCCCHh--hh--HHHHHHc----CCCHHHHH-------HHHHHHHcC--CCHHHHHHHHHHHHc
Confidence            3467999999999999987444  44  9999988    88888877       778887776  789999999999998


Q ss_pred             ----ccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cchhHHhccCCCCCCCCCcHHHHHHHHH
Q 010976          262 ----LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG----LAEDTLRTGGTVNPREVSPNELYSQSAI  333 (496)
Q Consensus       262 ----~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~A~~  333 (496)
                          .+++          ++|+.+|++|.+.  .++.++++||.+|..    .++                   +.+|..
T Consensus        70 G~g~~~d~----------~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d-------------------~~~A~~  118 (138)
T 1klx_A           70 GKYVKKDL----------RKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKN-------------------EKQAVK  118 (138)
T ss_dssp             CSSSCCCH----------HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC-------------------HHHHHH
T ss_pred             CCCCCccH----------HHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcC-------------------HHHHHH
Confidence                7777          9999999999987  789999999999987    555                   789999


Q ss_pred             HHHHHHhcCCcHH
Q 010976          334 YIAAAHALKPSYS  346 (496)
Q Consensus       334 ~~~~a~~l~p~~~  346 (496)
                      +|+++.+......
T Consensus       119 ~~~~Aa~~g~~~A  131 (138)
T 1klx_A          119 TFEKACRLGSEDA  131 (138)
T ss_dssp             HHHHHHHTTCHHH
T ss_pred             HHHHHHHCCCHHH
Confidence            9999998865443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.86  E-value=3e-08  Score=94.96  Aligned_cols=157  Identities=13%  Similarity=0.033  Sum_probs=119.8

Q ss_pred             hhcHHHHHHHHHHhhccchhhhHhh-ccHHHHHH-----HHHHH-HHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchh
Q 010976          111 AEQNNAAMELINSVTGVDEEGRSRQ-RILTFAAK-----RYANA-IERNPEDYDALYNWALVLQESADNVSLDSTSPSKD  183 (496)
Q Consensus       111 ~~~~~~A~~~~~~~l~~~~~~~~~~-g~~~~Ai~-----~~~~a-l~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~  183 (496)
                      ......|..+|.++......++... ..+.+++.     -+.++ -+.+|+++++++..|.+....-.   ........+
T Consensus       100 ~~~~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~---~~~gg~~Al  176 (301)
T 3u64_A          100 NEAYSRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFA---LTPLGSALP  176 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHT---TSCTTSCCH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHh---cCCCChHHH
Confidence            3445566667666665554443322 33333332     22333 34579999999999988866322   112335677


Q ss_pred             hhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHH
Q 010976          184 ALLEEACKKYDEATRLCPT--LHDAFYNWAIAISDRAKMR-----GRTKEAEELWKQATKNYEKAVQLNWNS-PQALNNW  255 (496)
Q Consensus       184 ~~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~~~~~~~~~-----g~~~eA~~~~~~A~~~~~~Al~l~P~~-~~a~~~l  255 (496)
                      +...+|...+++|++++|+  +..+|..+|.+|..    .     |+.++|.       .+|++||+++|+. ..+++.+
T Consensus       177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~----vPp~~gGd~ekA~-------~~ferAL~LnP~~~id~~v~Y  245 (301)
T 3u64_A          177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAA----APESFGGGMEKAH-------TAFEHLTRYCSAHDPDHHITY  245 (301)
T ss_dssp             HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH----SCTTTTCCHHHHH-------HHHHHHHHHCCTTCSHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHh----CCCccCCCHHHHH-------HHHHHHHHhCCCCCchHHHHH
Confidence            8899999999999999999  66799999999987    7     9999999       8999999999975 9999999


Q ss_pred             HHHHHHc-cCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976          256 GLALQEL-SAIVPAREKQTIVRTAISKFRAAIQLQFD  291 (496)
Q Consensus       256 g~~l~~~-g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~  291 (496)
                      |..+... |++          ++|...+++|++.+|.
T Consensus       246 A~~l~~~~gd~----------~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          246 ADALCIPLNNR----------AGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHTTTTTTCH----------HHHHHHHHHHHHCCGG
T ss_pred             HHHHHHhcCCH----------HHHHHHHHHHHcCCCC
Confidence            9999884 888          9999999999999877

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.85  E-value=2.9e-09  Score=108.72  Aligned_cols=186  Identities=13%  Similarity=0.042  Sum_probs=70.0

Q ss_pred             hhhhhhcHHHHHHHHHHhhccc-----hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcc
Q 010976          107 PHQLAEQNNAAMELINSVTGVD-----EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPS  181 (496)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~l~~~-----~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~  181 (496)
                      ++...+++++|++.|.+.-...     .......|++++|+.+++.+++..++ +.+...++.+|.++|+          
T Consensus        41 A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~----------  109 (449)
T 1b89_A           41 AQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNR----------  109 (449)
T ss_dssp             ---------------------------------------------------------------------C----------
T ss_pred             HHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCC----------
Confidence            3345566666666665532222     12233457777777777777764333 5666677777777777          


Q ss_pred             hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010976          182 KDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE  261 (496)
Q Consensus       182 ~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~  261 (496)
                          +.++.++++.     |+ ..+|.++|..+..    .|++++|+       .+|.++        ..|..+|.++.+
T Consensus       110 ----l~e~e~f~~~-----pn-~~a~~~IGd~~~~----~g~yeeA~-------~~Y~~a--------~n~~~LA~~L~~  160 (449)
T 1b89_A          110 ----LAELEEFING-----PN-NAHIQQVGDRCYD----EKMYDAAK-------LLYNNV--------SNFGRLASTLVH  160 (449)
T ss_dssp             ----HHHHTTTTTC-----C---------------------CTTTHH-------HHHHHT--------TCHHHHHHHHHT
T ss_pred             ----HHHHHHHHcC-----Cc-HHHHHHHHHHHHH----cCCHHHHH-------HHHHHh--------hhHHHHHHHHHH
Confidence                6666666542     33 2477777777777    77777777       444433        356667777777


Q ss_pred             ccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHH------------HHH
Q 010976          262 LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNE------------LYS  329 (496)
Q Consensus       262 ~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~------------~~~  329 (496)
                      +|++          ++|++.|++|     +++..|..++.++...|+...+....+. ....|.+            .+.
T Consensus       161 Lg~y----------q~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l~~lv~~Yek~G~~e  224 (449)
T 1b89_A          161 LGEY----------QAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFE  224 (449)
T ss_dssp             TTCH----------HHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hccH----------HHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhHHHHHHHHHHCCCHH
Confidence            7776          8888888877     4677777777777777766555443332 2233332            267


Q ss_pred             HHHHHHHHHHhcCCcHHHH
Q 010976          330 QSAIYIAAAHALKPSYSVY  348 (496)
Q Consensus       330 ~A~~~~~~a~~l~p~~~~y  348 (496)
                      +++.++++++.+++.+...
T Consensus       225 Eai~lLe~aL~le~ah~~~  243 (449)
T 1b89_A          225 ELITMLEAALGLERAHMGM  243 (449)
T ss_dssp             HHHHHHHHHTTSTTCCHHH
T ss_pred             HHHHHHHHHhCCcHHHHHH
Confidence            8889999999999887633

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.84  E-value=4.1e-09  Score=107.55  Aligned_cols=156  Identities=12%  Similarity=0.070  Sum_probs=96.1

Q ss_pred             hhhhhcHHHHHHHHHHhhccc---------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 010976          108 HQLAEQNNAAMELINSVTGVD---------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST  178 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~---------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~  178 (496)
                      ....|++++|+.++..++...         ..++.+.|++.++.+.++.     |+. .+|.++|..+...|+       
T Consensus        71 ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~-~a~~~IGd~~~~~g~-------  137 (449)
T 1b89_A           71 ANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING-----PNN-AHIQQVGDRCYDEKM-------  137 (449)
T ss_dssp             --------------------------------------CHHHHTTTTTC-----C-----------------C-------
T ss_pred             HHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC-----CcH-HHHHHHHHHHHHcCC-------
Confidence            345788888988887776432         2356778999998888853     543 599999999999999       


Q ss_pred             CcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010976          179 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA  258 (496)
Q Consensus       179 ~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  258 (496)
                             |++|+.+|.++        ..|..+|.++..    +|++++|+       ++|+++     +++.+|..++.+
T Consensus       138 -------yeeA~~~Y~~a--------~n~~~LA~~L~~----Lg~yq~AV-------ea~~KA-----~~~~~Wk~v~~a  186 (449)
T 1b89_A          138 -------YDAAKLLYNNV--------SNFGRLASTLVH----LGEYQAAV-------DGARKA-----NSTRTWKEVCFA  186 (449)
T ss_dssp             -------TTTHHHHHHHT--------TCHHHHHHHHHT----TTCHHHHH-------HHHHHH-----TCHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHh--------hhHHHHHHHHHH----hccHHHHH-------HHHHHc-----CCchhHHHHHHH
Confidence                   99999999987        468899999999    99999999       677776     478888888888


Q ss_pred             HHHccCcchH--------------------HHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976          259 LQELSAIVPA--------------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  307 (496)
Q Consensus       259 l~~~g~~~~A--------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g  307 (496)
                      +...|+++.|                    +++.|++++|+..+++++.+++.+..++..||.+|.+-.
T Consensus       187 Cv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~  255 (449)
T 1b89_A          187 CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK  255 (449)
T ss_dssp             HHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred             HHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC
Confidence            8888877776                    457788999999999999999999999999999998765

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.78  E-value=9.3e-08  Score=93.43  Aligned_cols=152  Identities=7%  Similarity=-0.042  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHH
Q 010976          141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP--TLHDAFYNWAIAISDRA  218 (496)
Q Consensus       141 Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P--~~~~a~~~lg~~~~~~~  218 (496)
                      |+..+++.+...+....+++.+|.++...|+              +++|++.+.+.+..+|  ++.+++..++.++..  
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~--------------~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~--  148 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGD--------------LDKSLETCVEGIDNDEAEGTTELLLLAIEVALL--  148 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC--------------HHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH--
Confidence            7888999888877778888999999999999              9999999999999997  889999999999999  


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHhcCCC----CHHHHHHHHH--HHHHcc--CcchHHHhhhhHHHHHHHHHHHHHhcC
Q 010976          219 KMRGRTKEAEELWKQATKNYEKAVQLNWN----SPQALNNWGL--ALQELS--AIVPAREKQTIVRTAISKFRAAIQLQF  290 (496)
Q Consensus       219 ~~~g~~~eA~~~~~~A~~~~~~Al~l~P~----~~~a~~~lg~--~l~~~g--~~~~A~~~~~~~~~Ai~~~~~Al~l~P  290 (496)
                        +|+.+.|.       +.+++..+.+|+    +-.++.+++.  +....|  ++          .+|...|+++....|
T Consensus       149 --~~r~d~A~-------k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~----------q~A~~~f~El~~~~p  209 (310)
T 3mv2_B          149 --NNNVSTAS-------TIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETA----------TSNFYYYEELSQTFP  209 (310)
T ss_dssp             --TTCHHHHH-------HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTT----------THHHHHHHHHHTTSC
T ss_pred             --CCCHHHHH-------HHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccH----------HHHHHHHHHHHHhCC
Confidence              99999999       788888888883    3344455544  455556  78          999999999988888


Q ss_pred             C--CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhc----------CCcHHHHH
Q 010976          291 D--FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL----------KPSYSVYS  349 (496)
Q Consensus       291 ~--~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l----------~p~~~~y~  349 (496)
                      +  ....++|   ++..+|+                   |.+|...+++.+++          +|+++...
T Consensus       210 ~~~~~~lLln---~~~~~g~-------------------~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L  258 (310)
T 3mv2_B          210 TWKTQLGLLN---LHLQQRN-------------------IAEAQGIVELLLSDYYSVEQKENAVLYKPTFL  258 (310)
T ss_dssp             SHHHHHHHHH---HHHHHTC-------------------HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred             CcccHHHHHH---HHHHcCC-------------------HHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence            7  3445555   8999998                   88999999887776          47788655

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.66  E-value=7.5e-08  Score=99.19  Aligned_cols=107  Identities=11%  Similarity=-0.046  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHH
Q 010976          186 LEEACKKYDEATRL-----CPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ-LNWNSPQALNNWG  256 (496)
Q Consensus       186 ~~~A~~~~~~Al~l-----~P~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~-l~P~~~~a~~~lg  256 (496)
                      |++|+..|++++++     .|++   ...+.++|.+|..    +|+|++|+.++++++..|++.+- .+|.-...++|||
T Consensus       303 ~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~----~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa  378 (429)
T 3qwp_A          303 WEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN----LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG  378 (429)
T ss_dssp             HHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence            99999999999986     3444   5689999999999    99999999999999999998873 3355667899999


Q ss_pred             HHHHHccCcchHHHhhhhHHHHHHHHHHHHHh-----cCCCH---HHHHHHHHHHHHc
Q 010976          257 LALQELSAIVPAREKQTIVRTAISKFRAAIQL-----QFDFH---RAIYNLGTVLYGL  306 (496)
Q Consensus       257 ~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l-----~P~~~---~a~~~lg~~~~~~  306 (496)
                      .+|..+|++          ++|+..|++|+++     .|+++   .++.+|+.+...+
T Consensus       379 ~~~~~~g~~----------~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          379 KLQLHQGMF----------PQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHTTCH----------HHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCH----------HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            999999999          9999999999986     56665   4556677666544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.66  E-value=7.4e-08  Score=99.20  Aligned_cols=97  Identities=12%  Similarity=-0.005  Sum_probs=83.8

Q ss_pred             hHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHH
Q 010976          185 LLEEACKKYDEATRL-----CPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL-NWNSPQALNNW  255 (496)
Q Consensus       185 ~~~~A~~~~~~Al~l-----~P~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l-~P~~~~a~~~l  255 (496)
                      +|++|+..|++++++     .|++   ...+.+||.+|..    +|+|++|+.+|++++..+++.+.- +|+-...++||
T Consensus       313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY----MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            399999999999996     4444   5679999999999    999999999999999999988743 35566789999


Q ss_pred             HHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh-----cCCCHHH
Q 010976          256 GLALQELSAIVPAREKQTIVRTAISKFRAAIQL-----QFDFHRA  295 (496)
Q Consensus       256 g~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l-----~P~~~~a  295 (496)
                      |.+|..+|++          ++|+..|++|+++     .|+++..
T Consensus       389 a~~~~~qg~~----------~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          389 GRLYMGLENK----------AAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             HHHHHhccCH----------HHHHHHHHHHHHHHHHHcCCCChHH
Confidence            9999999999          9999999999986     5777654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.64  E-value=2e-07  Score=80.94  Aligned_cols=103  Identities=14%  Similarity=0.015  Sum_probs=90.6

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhC-C-CCHHHHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-P-TLHDAFYNWAI  212 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~-P-~~~~a~~~lg~  212 (496)
                      ...+..+.+.|.+.+..++.+.++.+++|+++.+..+           ..++++++..++..++.+ | ++.+++|+||.
T Consensus        11 ~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~-----------~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv   79 (152)
T 1pc2_A           11 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKY-----------NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   79 (152)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSS-----------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCC-----------HHHHHHHHHHHHHHHhcCCccchHHHHHHHHH
Confidence            3567788999999999999999999999999999883           122889999999999999 7 67899999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010976          213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL  259 (496)
Q Consensus       213 ~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  259 (496)
                      .+++    +|+|++|+       .+++++|+++|+|.++...+-.+-
T Consensus        80 ~~~k----l~~Y~~A~-------~y~~~lL~ieP~n~QA~~Lk~~ie  115 (152)
T 1pc2_A           80 GNYR----LKEYEKAL-------KYVRGLLQTEPQNNQAKELERLID  115 (152)
T ss_dssp             HHHH----TSCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHH----ccCHHHHH-------HHHHHHHhcCCCCHHHHHHHHHHH
Confidence            9999    99999999       899999999999999877655443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.64  E-value=6.3e-08  Score=99.75  Aligned_cols=114  Identities=10%  Similarity=-0.144  Sum_probs=95.1

Q ss_pred             hHhhccHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh----
Q 010976          132 RSRQRILTFAAKRYANAIERN-----PED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL----  199 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~-----P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l----  199 (496)
                      +..+|+|++|+..|++++++.     |++   ...+.++|.+|..+|+              |++|+.+|++++.+    
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~--------------~~eA~~~~~~~L~i~~~~  362 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL--------------LEEALFYGTRTMEPYRIF  362 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHHHhHHHH
Confidence            446799999999999999763     444   5688999999999999              99999999999987    


Q ss_pred             ----CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Q 010976          200 ----CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGLALQELS  263 (496)
Q Consensus       200 ----~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g  263 (496)
                          +|+....+++||.+|..    +|++++|+..|++|++.+++.+.-+ |....++.+|+.+..+++
T Consensus       363 lg~~Hp~~a~~l~nLa~~~~~----~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          363 FPGSHPVRGVQVMKVGKLQLH----QGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR  427 (429)
T ss_dssp             SCSSCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence                44455679999999999    9999999999999999999887443 445566788888776654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.59  E-value=9.1e-08  Score=98.51  Aligned_cols=98  Identities=13%  Similarity=0.029  Sum_probs=83.6

Q ss_pred             hhccHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh------
Q 010976          134 RQRILTFAAKRYANAIER-----NPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL------  199 (496)
Q Consensus       134 ~~g~~~~Ai~~~~~al~~-----~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l------  199 (496)
                      ..|+|++|+..|++++++     .|++   ...+.++|.+|..+|+              |++|+.+|++++++      
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~--------------~~eA~~~~~~aL~i~~~~lG  375 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD--------------WEGALKYGQKIIKPYSKHYP  375 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHSC
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC--------------HHHHHHHHHHHHHHHHHHcC
Confidence            358999999999999986     3444   5678999999999999              99999999999987      


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 010976          200 --CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA  251 (496)
Q Consensus       200 --~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a  251 (496)
                        +|+.+..++|||.+|..    +|++++|+..|++|++.+++.+  -|+++.+
T Consensus       376 ~~Hp~~a~~l~nLa~~~~~----qg~~~eA~~~~~~Al~i~~~~l--G~~Hp~~  423 (433)
T 3qww_A          376 VYSLNVASMWLKLGRLYMG----LENKAAGEKALKKAIAIMEVAH--GKDHPYI  423 (433)
T ss_dssp             SSCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHT--CTTCHHH
T ss_pred             CCChHHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHHc--CCCChHH
Confidence              45556679999999999    9999999999999999998875  4555543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.56  E-value=2.7e-07  Score=73.74  Aligned_cols=72  Identities=15%  Similarity=-0.026  Sum_probs=67.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHH
Q 010976          200 CPTLHDAFYNWAIAISDRAKMRGR---TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVR  276 (496)
Q Consensus       200 ~P~~~~a~~~lg~~~~~~~~~~g~---~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~  276 (496)
                      +|+++.++..+|.+++.    .++   .++|.       ..++++++++|+++.+++.+|.++++.|+|          +
T Consensus         2 ~p~~~~~~~~~a~al~~----~~~~~~~~~A~-------~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y----------~   60 (93)
T 3bee_A            2 NAVTATQLAAKATTLYY----LHKQAMTDEVS-------LLLEQALQLEPYNEAALSLIANDHFISFRF----------Q   60 (93)
T ss_dssp             CCCCHHHHHHHHHHHHH----TTTTCCCHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------H
T ss_pred             CCCCHHHHHHHHHHHHH----hcCCCCCHHHH-------HHHHHHHHHCcCCHHHHHHHHHHHHHcCCH----------H
Confidence            68999999999999986    665   68888       899999999999999999999999999999          9


Q ss_pred             HHHHHHHHHHHhcCCC
Q 010976          277 TAISKFRAAIQLQFDF  292 (496)
Q Consensus       277 ~Ai~~~~~Al~l~P~~  292 (496)
                      +|+..|+++++.+|..
T Consensus        61 ~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A           61 EAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             HHHHHHHHHHTCCCTT
T ss_pred             HHHHHHHHHHhhCCCC
Confidence            9999999999999984

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.56  E-value=5.8e-07  Score=77.99  Aligned_cols=106  Identities=9%  Similarity=0.010  Sum_probs=91.9

Q ss_pred             hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHHhcC-C-CCHHHHHHHH
Q 010976          182 KDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG---RTKEAEELWKQATKNYEKAVQLN-W-NSPQALNNWG  256 (496)
Q Consensus       182 ~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g---~~~eA~~~~~~A~~~~~~Al~l~-P-~~~~a~~~lg  256 (496)
                      ..+.+..+.+.|.+.+..++.+.++.+++|.++..    ..   +..+++       ..++..++.+ | ++.+++++||
T Consensus        10 ~~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~----S~~~~~~~~gI-------~lLe~ll~~~~p~~~rd~lY~LA   78 (152)
T 1pc2_A           10 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR----SKYNDDIRKGI-------VLLEELLPKGSKEEQRDYVFYLA   78 (152)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT----CSSHHHHHHHH-------HHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc----CCCHHHHHHHH-------HHHHHHHhcCCccchHHHHHHHH
Confidence            44568889999999999999999999999999998    77   444666       8999999988 7 6789999999


Q ss_pred             HHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          257 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       257 ~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                      ..+.++|+|          ++|+.+++++|+++|+|..+...+-.+-....+
T Consensus        79 v~~~kl~~Y----------~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k  120 (152)
T 1pc2_A           79 VGNYRLKEY----------EKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  120 (152)
T ss_dssp             HHHHHTSCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            999999999          999999999999999999988877666555443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.54  E-value=5.8e-07  Score=71.78  Aligned_cols=72  Identities=11%  Similarity=-0.046  Sum_probs=68.0

Q ss_pred             CCCCHHHHHHHHHHHHHccC---cchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCC
Q 010976          245 NWNSPQALNNWGLALQELSA---IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPRE  321 (496)
Q Consensus       245 ~P~~~~a~~~lg~~l~~~g~---~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~  321 (496)
                      +|+++..+..+|.+++..++   .          ++|...+++||+++|+++.+++.+|.+++..|+             
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~----------~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~-------------   58 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMT----------DEVSLLLEQALQLEPYNEAALSLIANDHFISFR-------------   58 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCC----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCC----------HHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC-------------
Confidence            68999999999999987666   6          999999999999999999999999999999999             


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCcH
Q 010976          322 VSPNELYSQSAIYIAAAHALKPSY  345 (496)
Q Consensus       322 ~~~~~~~~~A~~~~~~a~~l~p~~  345 (496)
                            |..|+.+|+++++.+|..
T Consensus        59 ------y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A           59 ------FQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             ------HHHHHHHHHHHHTCCCTT
T ss_pred             ------HHHHHHHHHHHHhhCCCC
Confidence                  999999999999999984

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.52  E-value=2.8e-06  Score=92.26  Aligned_cols=169  Identities=10%  Similarity=-0.024  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHH
Q 010976          138 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEAC-KKYDEATRLCPTLHDAFYNWAIAISD  216 (496)
Q Consensus       138 ~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~Al~l~P~~~~a~~~lg~~~~~  216 (496)
                      .......|+++|...|.+++.|+..+..+...|+              .++|. +.|++|+..+|.+...|..++.....
T Consensus       325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~--------------~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~  390 (679)
T 4e6h_A          325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNT--------------DSTVITKYLKLGQQCIPNSAVLAFSLSEQYEL  390 (679)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSC--------------CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc--------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3456788999999999999999999999999999              88997 99999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHHh----cCCC-----------CHHHHHHHHHHHHHccCcchHHH-----------
Q 010976          217 RAKMRGRTKEAEELWKQATKNYEKAVQ----LNWN-----------SPQALNNWGLALQELSAIVPARE-----------  270 (496)
Q Consensus       217 ~~~~~g~~~eA~~~~~~A~~~~~~Al~----l~P~-----------~~~a~~~lg~~l~~~g~~~~A~~-----------  270 (496)
                          .|++++|.+.|++++..+...+.    -.|.           ...+|..++.+..+.|..+.|+.           
T Consensus       391 ----~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~  466 (679)
T 4e6h_A          391 ----NTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL  466 (679)
T ss_dssp             ----TTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG
T ss_pred             ----hCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Confidence                99999999888888776543332    1253           34577888887777777733300           


Q ss_pred             --------------hh-hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHH
Q 010976          271 --------------KQ-TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYI  335 (496)
Q Consensus       271 --------------~~-~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~  335 (496)
                                    .. ++.+.|...|+++++..|+++..+...+......|+                   ...|...|
T Consensus       467 ~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~-------------------~~~AR~lf  527 (679)
T 4e6h_A          467 VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNE-------------------ESQVKSLF  527 (679)
T ss_dssp             SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-------------------HHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCC-------------------HHHHHHHH
Confidence                          11 224555555555555555555555555555555544                   56777778


Q ss_pred             HHHHhcCC
Q 010976          336 AAAHALKP  343 (496)
Q Consensus       336 ~~a~~l~p  343 (496)
                      ++++...|
T Consensus       528 eral~~~~  535 (679)
T 4e6h_A          528 ESSIDKIS  535 (679)
T ss_dssp             HHHTTTSS
T ss_pred             HHHHHhcC
Confidence            88887776

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.51  E-value=3.3e-06  Score=91.69  Aligned_cols=170  Identities=9%  Similarity=0.009  Sum_probs=129.4

Q ss_pred             hhccHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh-----------CC
Q 010976          134 RQRILTFAA-KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-----------CP  201 (496)
Q Consensus       134 ~~g~~~~Ai-~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-----------~P  201 (496)
                      ..|+.++|+ ..|++|+..+|.+...|..++.+....|+              +++|.+.|++++..           .|
T Consensus       355 ~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~--------------~e~aR~iyek~l~~l~~~~~~~~~~~p  420 (679)
T 4e6h_A          355 EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTK--------------IPEIETTILSCIDRIHLDLAALMEDDP  420 (679)
T ss_dssp             HHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             hcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence            357778897 99999999999999999999999999999              99999999999985           25


Q ss_pred             C-----------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-----------------------------HHHHHHHH
Q 010976          202 T-----------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQ-----------------------------ATKNYEKA  241 (496)
Q Consensus       202 ~-----------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~-----------------------------A~~~~~~A  241 (496)
                      .           ...+|..++.....    .|..+.|...|.+                             |...|+++
T Consensus       421 ~~~~~~~~~~~~~~~vWi~y~~~erR----~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~  496 (679)
T 4e6h_A          421 TNESAINQLKSKLTYVYCVYMNTMKR----IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELG  496 (679)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred             cchhhhhhhccchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            3           34467777776666    6777777644433                             44455566


Q ss_pred             HhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcchhHHhccCCCC
Q 010976          242 VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD---FHRAIYNLGTVLYGLAEDTLRTGGTVN  318 (496)
Q Consensus       242 l~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~---~~~a~~~lg~~~~~~g~~~~a~~~~~~  318 (496)
                      ++..|+++..+...+......|+.          +.|...|++|+...|+   ....|..+...-...|.          
T Consensus       497 Lk~~p~~~~~w~~y~~fe~~~~~~----------~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~----------  556 (679)
T 4e6h_A          497 LKYFATDGEYINKYLDFLIYVNEE----------SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS----------  556 (679)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC----------
T ss_pred             HHHCCCchHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC----------
Confidence            666666666666666666666666          9999999999999883   45666666666667776          


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHH
Q 010976          319 PREVSPNELYSQSAIYIAAAHALKPSYSVYSS  350 (496)
Q Consensus       319 ~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~  350 (496)
                               ...+...+.++.+..|+.+....
T Consensus       557 ---------~~~~~~v~~R~~~~~P~~~~~~~  579 (679)
T 4e6h_A          557 ---------LNSVRTLEKRFFEKFPEVNKLEE  579 (679)
T ss_dssp             ---------SHHHHHHHHHHHHHSTTCCHHHH
T ss_pred             ---------HHHHHHHHHHHHHhCCCCcHHHH
Confidence                     57788899999999998764333

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.50  E-value=7.9e-07  Score=72.38  Aligned_cols=86  Identities=13%  Similarity=0.111  Sum_probs=69.8

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHH
Q 010976          203 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKF  282 (496)
Q Consensus       203 ~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~  282 (496)
                      ++.-.+.+|..++.    .|+|..|+..|++|+..+..--...+....++.+||.++.++|++          +.|+..+
T Consensus         4 sa~dc~~lG~~~~~----~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~----------~~A~~~~   69 (104)
T 2v5f_A            4 TAEDCFELGKVAYT----EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL----------DKALLLT   69 (104)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH----------HHHHHHH
T ss_pred             CHHHHHHHHHHHHH----ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCH----------HHHHHHH
Confidence            35567899999999    999999996555555544321111345688999999999999999          9999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHH
Q 010976          283 RAAIQLQFDFHRAIYNLGTV  302 (496)
Q Consensus       283 ~~Al~l~P~~~~a~~~lg~~  302 (496)
                      +++++++|++..+..|++.+
T Consensus        70 ~~al~l~P~~~~~~~n~~~~   89 (104)
T 2v5f_A           70 KKLLELDPEHQRANGNLKYF   89 (104)
T ss_dssp             HHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHhhHHHH
Confidence            99999999999999999843

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.43  E-value=2.2e-06  Score=69.66  Aligned_cols=78  Identities=15%  Similarity=0.067  Sum_probs=70.6

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHcCCHHHH
Q 010976          155 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-------PTLHDAFYNWAIAISDRAKMRGRTKEA  227 (496)
Q Consensus       155 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~~~~~~~~~g~~~eA  227 (496)
                      ++.-.+.+|..++..++              |..|+..|++|++..       +....++.+||.++..    +|++++|
T Consensus         4 sa~dc~~lG~~~~~~~~--------------y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~----~g~~~~A   65 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEAD--------------YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----QGDLDKA   65 (104)
T ss_dssp             CHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH----TTCHHHH
T ss_pred             CHHHHHHHHHHHHHccc--------------hHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH----ccCHHHH
Confidence            45667899999999999              999999999999973       3467899999999999    9999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976          228 EELWKQATKNYEKAVQLNWNSPQALNNWGL  257 (496)
Q Consensus       228 ~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  257 (496)
                      +       ..++++++++|++..+++|++.
T Consensus        66 ~-------~~~~~al~l~P~~~~~~~n~~~   88 (104)
T 2v5f_A           66 L-------LLTKKLLELDPEHQRANGNLKY   88 (104)
T ss_dssp             H-------HHHHHHHHHCTTCHHHHHHHHH
T ss_pred             H-------HHHHHHHhcCCCCHHHHhhHHH
Confidence            9       8999999999999999999983

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.90  E-value=0.00061  Score=71.20  Aligned_cols=146  Identities=10%  Similarity=-0.004  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--
Q 010976          138 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS--  215 (496)
Q Consensus       138 ~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~--  215 (496)
                      .......|++++...|..+..|...+..+...|+              .++|...|++|+.. |.+...++..+....  
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~--------------~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~  259 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQ--------------KEKAKKVVERGIEM-SDGMFLSLYYGLVMDEE  259 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhC-CCcHHHHHHHHhhcchh
Confidence            4556789999999999999999999999999999              99999999999999 998776665544310  


Q ss_pred             ----HHHHHc--CC--------HHHH-------------HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-Ccch
Q 010976          216 ----DRAKMR--GR--------TKEA-------------EELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS-AIVP  267 (496)
Q Consensus       216 ----~~~~~~--g~--------~~eA-------------~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g-~~~~  267 (496)
                          ..+...  ..        ....             ...++.|...|.+| ...+.....|...+.+-...+ +.  
T Consensus       260 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~--  336 (493)
T 2uy1_A          260 AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSR--  336 (493)
T ss_dssp             HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCS--
T ss_pred             HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCCh--
Confidence                000000  00        0000             01123455788888 433345667777777777666 47  


Q ss_pred             HHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010976          268 AREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED  309 (496)
Q Consensus       268 A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~  309 (496)
                              +.|...|+++++..|+.+..+...+......|+.
T Consensus       337 --------~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~  370 (493)
T 2uy1_A          337 --------ATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDE  370 (493)
T ss_dssp             --------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             --------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Confidence                    9999999999999999998877777777777763

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.90  E-value=9.3e-05  Score=61.83  Aligned_cols=103  Identities=13%  Similarity=0.012  Sum_probs=87.7

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhC-C-CCHHHHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-P-TLHDAFYNWAI  212 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~-P-~~~~a~~~lg~  212 (496)
                      ...+..+...|.+.+..++...++.+++|+++.....           ..+..++|..++..+.-+ | ..-+.+|.||.
T Consensus        14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~-----------~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAv   82 (126)
T 1nzn_A           14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY-----------NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   82 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSS-----------HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCC-----------HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            3566778889999999899999999999999998776           223555999999999887 5 56789999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010976          213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL  259 (496)
Q Consensus       213 ~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  259 (496)
                      .+++    +|+|.+|+       .+++..|+.+|+|.++......+-
T Consensus        83 g~yk----lg~Y~~A~-------~~~~~lL~~eP~n~QA~~Lk~~i~  118 (126)
T 1nzn_A           83 GNYR----LKEYEKAL-------KYVRGLLQTEPQNNQAKELERLID  118 (126)
T ss_dssp             HHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHH----hhhHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999    99999999       899999999999999887665543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.78  E-value=0.00024  Score=59.37  Aligned_cols=101  Identities=10%  Similarity=0.035  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcc
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-W-NSPQALNNWGLALQELS  263 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~-P-~~~~a~~~lg~~l~~~g  263 (496)
                      +..+.+.|.+.+..++...++.+++|.++..    ..+..+-    +++|..++..+..+ | ..-.+++.||..++++|
T Consensus        17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~----S~~~~d~----~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg   88 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR----TRYNDDI----RKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK   88 (126)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT----SSSHHHH----HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHHHHHHc----CCCHHHH----HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence            7778889999999889999999999999988    7766551    24448888888876 5 57789999999999999


Q ss_pred             CcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010976          264 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY  304 (496)
Q Consensus       264 ~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~  304 (496)
                      +|          .+|+.+++..|+++|+|..+......+--
T Consensus        89 ~Y----------~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~  119 (126)
T 1nzn_A           89 EY----------EKALKYVRGLLQTEPQNNQAKELERLIDK  119 (126)
T ss_dssp             CH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99          99999999999999999988776555543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.50  E-value=0.022  Score=59.40  Aligned_cols=179  Identities=9%  Similarity=-0.050  Sum_probs=133.5

Q ss_pred             hHhhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCC-CCHHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERN-PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP-TLHDAFYN  209 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P-~~~~a~~~  209 (496)
                      +.+.|++++|+..|++..+.. .-+...|..+-.+|...+.     .......+.+++|.+.|++.....- -+...|..
T Consensus        36 c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~-----~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~  110 (501)
T 4g26_A           36 CSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEA-----ATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTN  110 (501)
T ss_dssp             TTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCC-----CSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCc-----hhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            467899999999999988764 2255666666555554443     1223345678999999999887632 26778899


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHH
Q 010976          210 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL--NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ  287 (496)
Q Consensus       210 lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~  287 (496)
                      +-.+|..    .|++++|.       ..|++..+.  .| +...|+.+-..|.+.|+.          ++|...|++..+
T Consensus       111 lI~~~~~----~g~~~~A~-------~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~----------~~A~~l~~~M~~  168 (501)
T 4g26_A          111 GARLAVA----KDDPEMAF-------DMVKQMKAFGIQP-RLRSYGPALFGFCRKGDA----------DKAYEVDAHMVE  168 (501)
T ss_dssp             HHHHHHH----HTCHHHHH-------HHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHH
T ss_pred             HHHHHHh----cCCHHHHH-------HHHHHHHHcCCCC-ccceehHHHHHHHHCCCH----------HHHHHHHHHHHh
Confidence            9999999    99999999       566665544  34 678899999999999999          999999999987


Q ss_pred             hcC-CCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHh--cCCcHHHHHHHHHhhh
Q 010976          288 LQF-DFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHA--LKPSYSVYSSALRLVR  356 (496)
Q Consensus       288 l~P-~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~--l~p~~~~y~~al~~~~  356 (496)
                      ..- -+...|..|-.+|.+.|+                   .++|..++++...  ..|+...|......+.
T Consensus       169 ~G~~Pd~~ty~~Li~~~~~~g~-------------------~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~  221 (501)
T 4g26_A          169 SEVVPEEPELAALLKVSMDTKN-------------------ADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK  221 (501)
T ss_dssp             TTCCCCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHhhCCC-------------------HHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence            632 246788889999999998                   6777777776644  5677776665555443

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*

Probab=97.50  E-value=5.1e-05  Score=67.49  Aligned_cols=105  Identities=12%  Similarity=0.186  Sum_probs=68.4

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccc---cC
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSAC---AD  440 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  440 (496)
                      ++.|||..............|.++||+|+...|..+.......            ......-.|+|.++..|+.+   .+
T Consensus         4 ikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~~~------------~~~~~~G~I~L~~~~~ve~~~~~~~   71 (169)
T 1btk_A            4 ILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERG------------RRGSKKGSIDVEKITCVETVVPEKN   71 (169)
T ss_dssp             CEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTT------------EEEEEEEEEEGGGEEEEEECCCCSS
T ss_pred             EEEEEEEEecCCCCCcccCCCceEEEEEcCCEEEEEecCCccC------------CCCceeeEEECcceEEEEeccCCCC
Confidence            4577877653222222235799999999988777765421000            00123568888888777655   22


Q ss_pred             CC--CC-----------CC--------CeeeEeecCCceeeeecChhhhhhHHHHHHHHHH
Q 010976          441 LT--LP-----------PG--------AGLCIETIHGPVFLVADSWEALDGWLDAIRLVYT  480 (496)
Q Consensus       441 ~~--~~-----------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  480 (496)
                      .+  .+           +|        +.|.|-|.....||.|+|.+++++|++||+-+..
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~F~I~t~~rt~yl~A~s~~E~~eWi~aI~~~i~  132 (169)
T 1btk_A           72 PPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWIHQLKNVIR  132 (169)
T ss_dssp             CCGGGCC---------CCTTHHHHCCCEEEEEEETTCCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred             cchhcccccccCcccccccccccccccccEEEEeCCceEEEEcCCHHHHHHHHHHHHHHHH
Confidence            11  11           11        6788877766779999999999999999997753

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.46  E-value=0.0031  Score=65.74  Aligned_cols=187  Identities=6%  Similarity=0.023  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHH
Q 010976          114 NNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKY  193 (496)
Q Consensus       114 ~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  193 (496)
                      .+.|-..|.+++...+.     ++++.+...|++++...| +.+.|..+.......+.             ..+.....|
T Consensus        11 i~~aR~vyer~l~~~P~-----~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~-------------~~~~i~~~f   71 (493)
T 2uy1_A           11 LSSPSAIMEHARRLYMS-----KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQ-------------KKFKLYEVY   71 (493)
T ss_dssp             -CCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC-----------------CTHHHH
T ss_pred             hHHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCc-------------hHHHHHHHH
Confidence            55566677777766643     789999999999999989 88899988888877664             034566788


Q ss_pred             HHHHHh---CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HH-------------
Q 010976          194 DEATRL---CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN-WG-------------  256 (496)
Q Consensus       194 ~~Al~l---~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~-lg-------------  256 (496)
                      ++|+..   +|.+...|......+...-...++.+.+.       ..|++||..-+.+..-++. ..             
T Consensus        72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR-------~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~  144 (493)
T 2uy1_A           72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIR-------NGYMRALQTPMGSLSELWKDFENFELELNKITGKK  144 (493)
T ss_dssp             HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHH-------HHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHH-------HHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHH
Confidence            888875   78888888887665431000023444444       6666666642222221111 00             


Q ss_pred             ---------------------------------HHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010976          257 ---------------------------------LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL  303 (496)
Q Consensus       257 ---------------------------------~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~  303 (496)
                                                       .+-+..++.. .....+..+.....|++++...|.++..|++.+..+
T Consensus       145 ~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~-~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~  223 (493)
T 2uy1_A          145 IVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM-KLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYL  223 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT-CCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc-cCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence                                             0001111100 000001134567899999999999999999999999


Q ss_pred             HHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHH
Q 010976          304 YGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV  347 (496)
Q Consensus       304 ~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~  347 (496)
                      ...|+                   ...|...|++|+.. |....
T Consensus       224 ~~~~~-------------------~~~ar~i~erAi~~-P~~~~  247 (493)
T 2uy1_A          224 IGIGQ-------------------KEKAKKVVERGIEM-SDGMF  247 (493)
T ss_dssp             HHTTC-------------------HHHHHHHHHHHHHH-CCSSH
T ss_pred             HHcCC-------------------HHHHHHHHHHHHhC-CCcHH
Confidence            98887                   67888899999999 87663

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=97.42  E-value=0.00011  Score=64.84  Aligned_cols=101  Identities=16%  Similarity=0.143  Sum_probs=69.1

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCC-
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT-  442 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  442 (496)
                      +..|+|..............|.++||+|....|..+......               ......|+|..+..|+.+.+.. 
T Consensus        16 i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~~~L~Yyk~~~~~---------------~~~~G~I~L~~~~~v~~~~~~~~   80 (164)
T 2lul_A           16 ILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEK---------------KYRKGFIDVSKIKCVEIVKNDDG   80 (164)
T ss_dssp             EEEEEEEEECCCCSSSCCCCEEEEEEEEESSEEEEECCCSSS---------------CCCCCEEEGGGCCEEEECCCCSS
T ss_pred             eEEEEEEEecCCCCCCCCCCceeEEEEEECCEEEEEeccCcc---------------cccccEEEEeeeEEEEecccccc
Confidence            446777655433333334469999999988777765321110               1224468888888887666532 


Q ss_pred             ---CCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHH
Q 010976          443 ---LPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       443 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  479 (496)
                         ....+.|.|.|.....||.|+|.++++.|++||+-|.
T Consensus        81 ~~~~~~~~~f~i~t~~rt~~l~A~s~~e~~~Wi~aL~~~i  120 (164)
T 2lul_A           81 VIPCQNKYPFQVVHDANTLYIFAPSPQSRDLWVKKLKEEI  120 (164)
T ss_dssp             SCCSSSCSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CcccccceeEEEecCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence               2356778888766666999999999999999998764

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.41  E-value=0.00053  Score=59.82  Aligned_cols=118  Identities=7%  Similarity=-0.077  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHHHHHcCCHHHH
Q 010976          157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---------HDAFYNWAIAISDRAKMRGRTKEA  227 (496)
Q Consensus       157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~---------~~a~~~lg~~~~~~~~~~g~~~eA  227 (496)
                      .+++.....++..+.              |+.|+-....++.+..++         ..+++.+|.+++.    .++|..|
T Consensus        21 ~~l~dqik~L~d~~L--------------Y~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~----~~eyrrA   82 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGL--------------HSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH----DKEYRNA   82 (167)
T ss_dssp             CCHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH----TTCHHHH
T ss_pred             HHHHHHHHHHHHhhh--------------HHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc----ccHHHHH
Confidence            345556666777777              999999999988874332         3478999999999    9999999


Q ss_pred             HHHHHHHHHHHHHHHhcC------------------CCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc
Q 010976          228 EELWKQATKNYEKAVQLN------------------WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ  289 (496)
Q Consensus       228 ~~~~~~A~~~~~~Al~l~------------------P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~  289 (496)
                      ...|++|+...+...+..                  +...+..+.++.||.++|++          ++|+..++..- ..
T Consensus        83 ~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~----------~~Ai~~Le~Ip-~k  151 (167)
T 3ffl_A           83 VSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQD----------KDAIAILDGIP-SR  151 (167)
T ss_dssp             HHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCH----------HHHHHHHHTSC-GG
T ss_pred             HHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCH----------HHHHHHHhcCC-ch
Confidence            999999888776433221                  22347899999999999999          99998876531 12


Q ss_pred             CCCHHHHHHHHHHH
Q 010976          290 FDFHRAIYNLGTVL  303 (496)
Q Consensus       290 P~~~~a~~~lg~~~  303 (496)
                      -..+.+...||.+|
T Consensus       152 ~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          152 QRTPKINMLLANLY  165 (167)
T ss_dssp             GCCHHHHHHHHHHC
T ss_pred             hcCHHHHHHHHHHh
Confidence            34577777777765

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.36  E-value=0.00028  Score=57.83  Aligned_cols=106  Identities=15%  Similarity=0.222  Sum_probs=74.5

Q ss_pred             hhhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCC
Q 010976          363 YLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT  442 (496)
Q Consensus       363 ~l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (496)
                      -+..|+|.....     ....|.++||+|....|..+.....                ......|+|..+..|+.+.+..
T Consensus         8 ~~~~G~L~K~~~-----~~~~Wk~R~fvL~~~~L~yy~~~~~----------------~~~~g~i~L~~~~~v~~~~~~~   66 (115)
T 2dn6_A            8 VLKQGYMMKKGH-----RRKNWTERWFVLKPNIISYYVSEDL----------------KDKKGDILLDENCCVESLPDKD   66 (115)
T ss_dssp             CSEEEEEEEECT-----TSSCEEEEEEEECSSCEEEESSTTC----------------SSEEEEECCCTTCEEEEECCCT
T ss_pred             ceEEEEEEecCC-----CCCCcEEeEEEEECCEEEEeCCCCC----------------cccCcEEEecCcEEEEECCCCC
Confidence            345677765421     2357999999998776665442211                1235678888877777654432


Q ss_pred             CCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHHHHHhhcccchh
Q 010976          443 LPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADVL  490 (496)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  490 (496)
                       ...+.|.|.+.....||.|+|.++++.|++||+.+......|..-..
T Consensus        67 -~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~~~~~~~~~  113 (115)
T 2dn6_A           67 -GKKCLFLVKCFDKTFEISASDKKKKQEWIQAIHSTIHLLKLGSSGPS  113 (115)
T ss_dssp             -TCCSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             -CCeeEEEEEeCCCEEEEEcCCHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence             34578888876555699999999999999999999998887765443

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=97.27  E-value=0.00018  Score=60.61  Aligned_cols=101  Identities=16%  Similarity=0.222  Sum_probs=63.7

Q ss_pred             hhccccCCCCCCCCCChhhhhhhccccch--hh-hhhhccccccccccccCCCCCCCCCCCceeeeecCceeeccccc-C
Q 010976          365 KAGYLTAPPAGIPVAPHSDWKRSQFVLNH--EG-LQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACA-D  440 (496)
Q Consensus       365 ~~g~l~~~~~~~~~~~~~~~~~~~~~l~~--~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  440 (496)
                      ..|||......    ....|.++||+|+.  .. |.....+..-.            ......-.|+|..+..|..+. .
T Consensus        17 ~~G~L~K~g~~----~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~~------------~~~~~~G~I~L~~~~~V~~~~~~   80 (126)
T 1v5p_A           17 ICGFLDIEDNE----NSGKFLRRYFILDTQANCLLWYMDNPQNLA------------VGAGAVGSLQLTYISKVSIATPK   80 (126)
T ss_dssp             EECCEEEECTT----CSSCEEEEEEEEETTTTEEEEESSCTTTSC------------TTCCCSEEEETTTCCEEEECCTT
T ss_pred             eEEEEEEeCCC----CCCCccceEEEEecCCCCEEEEECCCCCCC------------CCceeeEEEECCCccEEecCCcc
Confidence            46888765321    24589999999983  22 33322211000            001235578888877777664 2


Q ss_pred             CCCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHHHH
Q 010976          441 LTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTI  481 (496)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  481 (496)
                      ...-..++|.|.|..-.-||.|+|.++++.|++||+-+..|
T Consensus        81 ~~~~~~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~a~~~  121 (126)
T 1v5p_A           81 QKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASKS  121 (126)
T ss_dssp             TSCSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHTTTT
T ss_pred             cCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            22235577877765555699999999999999999976543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.26  E-value=0.0028  Score=54.19  Aligned_cols=128  Identities=12%  Similarity=0.071  Sum_probs=91.7

Q ss_pred             HhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHHHHc
Q 010976          150 ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL--------HDAFYNWAIAISDRAKMR  221 (496)
Q Consensus       150 ~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~--------~~a~~~lg~~~~~~~~~~  221 (496)
                      -+.|++++.|......+...|+        ....+.+++-+..|++|+..-|-.        ...|.+.+.. ..    .
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~--------p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~e----i   73 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSV--------PLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KA----I   73 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTC--------SCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HH----H
T ss_pred             eeCCCCHHHHHHHHHHHHHcCC--------CchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HH----h
Confidence            4689999999999999999888        111133488899999999986642        2334444322 23    6


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 010976          222 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT  301 (496)
Q Consensus       222 g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~  301 (496)
                      ++.++|.       +.|+.++.+...++..|...|..-.++|+.          ..|...+.+|+.+.|.....+ ..+.
T Consensus        74 ~D~d~aR-------~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl----------~kARkILg~AiG~~~k~~~~l-e~a~  135 (161)
T 4h7y_A           74 QEPDDAR-------DYFQMARANCKKFAFVHISFAQFELSQGNV----------KKSKQLLQKAVERGAVPLEML-EIAL  135 (161)
T ss_dssp             HCGGGCH-------HHHHHHHHHCTTBHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTCBCHHHH-HHHH
T ss_pred             cCHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHcccH----------HHHHHHHHHHhccCCCcHHHH-HHHH
Confidence            7777777       677777777777889999999988888888          999999999999999865533 3344


Q ss_pred             HHHHcch
Q 010976          302 VLYGLAE  308 (496)
Q Consensus       302 ~~~~~g~  308 (496)
                      .-.+.|+
T Consensus       136 ~nl~~~~  142 (161)
T 4h7y_A          136 RNLNLQK  142 (161)
T ss_dssp             HHHHTTC
T ss_pred             HhhhcCC
Confidence            4444443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.18  E-value=0.0051  Score=51.51  Aligned_cols=101  Identities=13%  Similarity=0.085  Sum_probs=80.2

Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q 010976          136 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDAFYNWAIAI  214 (496)
Q Consensus       136 g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~  214 (496)
                      .++....+.|.+-+ ...-.+.+.+++|+++....+           ..+..++|..++..++.+|. .-+.+|.||..+
T Consensus        21 eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~-----------~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~   88 (134)
T 3o48_A           21 QQLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTD-----------VNDERLGVKILTDIYKEAESRRRECLYYLTIGC   88 (134)
T ss_dssp             HHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSC-----------HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCC-----------HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence            34455555555544 223367899999999998876           23477899999999999984 578999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010976          215 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL  259 (496)
Q Consensus       215 ~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  259 (496)
                      ++    +|+|.+|.       .+.+..|+.+|+|.++......+-
T Consensus        89 yk----lgdY~~Ar-------~y~d~lL~~eP~N~QA~~Lk~~Ie  122 (134)
T 3o48_A           89 YK----LGEYSMAK-------RYVDTLFEHERNNKQVGALKSMVE  122 (134)
T ss_dssp             HH----HTCHHHHH-------HHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HH----hhhHHHHH-------HHHHHHHhhCCCCHHHHHHHHHHH
Confidence            99    99999999       899999999999999877665544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.11  E-value=0.0071  Score=51.27  Aligned_cols=100  Identities=13%  Similarity=0.081  Sum_probs=79.2

Q ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Q 010976          137 ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDAFYNWAIAIS  215 (496)
Q Consensus       137 ~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~  215 (496)
                      ++......|.+-+. +.-..++.+++|+++.....           ..+..++|..++..+.-.|. .-+.+|.||..++
T Consensus        21 eL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~-----------~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~y   88 (144)
T 1y8m_A           21 QLEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTD-----------VNDERLGVKILTDIYKEAESRRRECLYYLTIGCY   88 (144)
T ss_dssp             HHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSS-----------HHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCC-----------HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH
Confidence            34444455544312 35578999999999999876           33467899999999999984 6689999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010976          216 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL  259 (496)
Q Consensus       216 ~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  259 (496)
                      +    +|+|.+|.       .+.+..|+.+|+|.++......+-
T Consensus        89 k----l~~Y~~Ar-------~y~d~lL~~eP~n~QA~~Lk~~Ie  121 (144)
T 1y8m_A           89 K----LGEYSMAK-------RYVDTLFEHERNNKQVGALKSMVE  121 (144)
T ss_dssp             T----TTCHHHHH-------HHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             H----hhhHHHHH-------HHHHHHHhcCCCcHHHHHHHHHHH
Confidence            9    99999999       899999999999998876655443

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1

Probab=97.09  E-value=0.00053  Score=56.32  Aligned_cols=94  Identities=18%  Similarity=0.193  Sum_probs=64.6

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccc--hhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCC
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLN--HEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL  441 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (496)
                      ...|+|.....     ....|.++||+|.  ...|..+.....                ....-.|+|..+..+.++...
T Consensus         9 ~~~G~L~K~g~-----~~~~Wk~R~fvL~~~~~~L~yy~~~~~----------------~~~~g~i~L~~~~~v~~~~~~   67 (117)
T 1v5u_A            9 SYEGILYKKGA-----FMKPWKARWFVLDKTKHQLRYYDHRMD----------------TECKGVIDLAEVEAVAPGTPT   67 (117)
T ss_dssp             SEEEEEEECCC-----SSSCCEEEEEEEETTTTEEEEESSSSC----------------SSCCCEEEGGGEEEEECCCCC
T ss_pred             cEEEEEEecCC-----CCCCceeeEEEEECCCCEEEEeecCCC----------------CccceEEEccCcEEEeecCcc
Confidence            45677765532     2458999999998  445555432211                123557888888888766542


Q ss_pred             -CC----CCCCeeeEeecCCceeeeecChhhhhhHHHHHHHH
Q 010976          442 -TL----PPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       442 -~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  478 (496)
                       ..    ...++|.|.|.....||.|+|.++++.|++||+-+
T Consensus        68 ~~~~~~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~  109 (117)
T 1v5u_A           68 IGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSC  109 (117)
T ss_dssp             TTSCSSSCTTTCEEEEESSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred             ccccccCCCCeEEEEECCCceEEEECCCHHHHHHHHHHHHHH
Confidence             22    24578999765555689999999999999999753

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.04  E-value=0.00043  Score=60.00  Aligned_cols=98  Identities=14%  Similarity=0.145  Sum_probs=65.5

Q ss_pred             hhhhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCC
Q 010976          362 PYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL  441 (496)
Q Consensus       362 ~~l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (496)
                      +.++.|||....     .....|+++||+|....|..+......                ...-.|+|.....+.. .+.
T Consensus        17 pv~keG~L~Kkg-----~~~k~WkrRWFvLk~~~L~Yyk~~~d~----------------~~~g~I~L~~~~~~~~-~~~   74 (149)
T 1x1f_A           17 PLYFEGFLLIKR-----SGYREYEHYWTELRGTTLFFYTDKKSI----------------IYVDKLDIVDLTCLTE-QNS   74 (149)
T ss_dssp             CEEEEEEEEEEC-----TTCCSCEEEEEEEETTEEEEESCSSCS----------------SCSEECCCSSCCEEEE-CCC
T ss_pred             CccEEEEEEEeC-----CCCCCceeEEEEEcCCEEEEEeCCCcc----------------ccCcEEECCCceEEee-ccC
Confidence            356688887653     233689999999987766654432221                1124666666554411 111


Q ss_pred             CCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHHHH
Q 010976          442 TLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTI  481 (496)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  481 (496)
                      .-...+.|+|.|.....+|.|+|.++++.|+.||+-|..+
T Consensus        75 ~~~~~~~F~I~t~~r~~~f~A~s~ee~~eWi~aI~~v~~~  114 (149)
T 1x1f_A           75 TEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTEL  114 (149)
T ss_dssp             TTSCCCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHHS
T ss_pred             CCCcCcEEEEEcCCCEEEEEcCCHHHHHHHHHHHHHHHcc
Confidence            1124678999887777799999999999999999977654

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=96.98  E-value=0.0011  Score=54.11  Aligned_cols=97  Identities=22%  Similarity=0.288  Sum_probs=66.4

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCC
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  443 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (496)
                      +..|+|....     .....|.++||+|....|..+.....                ......|+|..+..+.++.+. -
T Consensus         6 ~~~G~L~K~g-----~~~~~Wk~R~fvL~~~~L~yy~~~~~----------------~~~~g~i~L~~~~~~~~~~~~-~   63 (113)
T 1pls_A            6 IREGYLVKKG-----SVFNTWKPMWVVLLEDGIEFYKKKSD----------------NSPKGMIPLKGSTLTSPCQDF-G   63 (113)
T ss_dssp             SEEEEEEEES-----SSSSCCEEEEEEEETTEEEEESSTTC----------------SSCSEEEESSSCCEESSCCSS-C
T ss_pred             cEEEEEEEeC-----CCCCCceEEEEEEECCEEEEEeCCCC----------------CCcceEEEcCCCEEEEecCCC-C
Confidence            3467776442     12457999999998777666443211                123557888877776654432 2


Q ss_pred             CCCCeeeEeecCCce-eeeecChhhhhhHHHHHHHHHHHH
Q 010976          444 PPGAGLCIETIHGPV-FLVADSWEALDGWLDAIRLVYTIY  482 (496)
Q Consensus       444 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~  482 (496)
                      ...++|.|.|..+.+ ||.|+|.++++.|++||+.+..-.
T Consensus        64 ~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~  103 (113)
T 1pls_A           64 KRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIKCI  103 (113)
T ss_dssp             CSSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCccEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHhcc
Confidence            356788888776554 899999999999999999876543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.97  E-value=0.0037  Score=54.46  Aligned_cols=101  Identities=13%  Similarity=0.050  Sum_probs=74.9

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhC---
Q 010976          133 SRQRILTFAAKRYANAIERNPED---------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC---  200 (496)
Q Consensus       133 ~~~g~~~~Ai~~~~~al~~~P~~---------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~---  200 (496)
                      +..+.|+.|+-....++.+..++         ..++..+|.+++..++              |.+|...|++||++.   
T Consensus        31 ~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~e--------------yrrA~~~y~qALq~~k~l   96 (167)
T 3ffl_A           31 AAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKE--------------YRNAVSKYTMALQQKKAL   96 (167)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHCC
T ss_pred             HHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccH--------------HHHHHHHHHHHHHHHHHH
Confidence            34678888998888877664333         3478999999999999              999999999998772   


Q ss_pred             ---CC-------------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010976          201 ---PT-------------------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA  258 (496)
Q Consensus       201 ---P~-------------------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  258 (496)
                         +.                   +.+..|.++.||..    ++++.+|+       ..++ .|-..-..+.....||.+
T Consensus        97 ~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~----l~~~~~Ai-------~~Le-~Ip~k~Rt~kvnm~LakL  164 (167)
T 3ffl_A           97 SKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTV----LKQDKDAI-------AILD-GIPSRQRTPKINMLLANL  164 (167)
T ss_dssp             --------------------CCCCHHHHHHHHHHHHHH----TTCHHHHH-------HHHH-TSCGGGCCHHHHHHHHHH
T ss_pred             hcCCCccccccccCCCcccccccchHHHHHHHHHHHHH----HCCHHHHH-------HHHh-cCCchhcCHHHHHHHHHH
Confidence               11                   12688999999999    99999999       3433 332233466777777766


Q ss_pred             H
Q 010976          259 L  259 (496)
Q Consensus       259 l  259 (496)
                      |
T Consensus       165 y  165 (167)
T 3ffl_A          165 Y  165 (167)
T ss_dssp             C
T ss_pred             h
Confidence            5

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1

Probab=96.95  E-value=0.0003  Score=58.61  Aligned_cols=98  Identities=21%  Similarity=0.331  Sum_probs=68.3

Q ss_pred             hhhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCC
Q 010976          363 YLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT  442 (496)
Q Consensus       363 ~l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (496)
                      .+..|+|....     .....|.++||+|....|..+.....                ......|+|.++..|..|....
T Consensus        14 ~~~~G~L~K~g-----~~~~~Wk~R~fvL~~~~L~yy~~~~~----------------~~~~g~i~l~~~~~v~~~~~~~   72 (125)
T 1eaz_A           14 VIKAGYCVKQG-----AVMKNWKRRYFQLDENTIGYFKSELE----------------KEPLRVIPLKEVHKVQECKQSD   72 (125)
T ss_dssp             CSEEEEEEEEC-----TTTCCEEEEEEEECSSEEEEESSTTC----------------SSCSEEEEGGGCCEEEECTTHH
T ss_pred             ccEEEEEEEeC-----CCCCCcceEEEEEeCCEEEEEcCCCC----------------CcceeEEEcccceEEeeccccc
Confidence            35578876552     13457999999998776665433221                1235578888888777654322


Q ss_pred             C-CCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHHHH
Q 010976          443 L-PPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTI  481 (496)
Q Consensus       443 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  481 (496)
                      . ...++|.|.|.....||.|+|.++++.|++||+.+...
T Consensus        73 ~~~~~~~F~i~~~~r~~~l~a~s~~e~~~W~~al~~~i~~  112 (125)
T 1eaz_A           73 IMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVA  112 (125)
T ss_dssp             HHTCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cCCcCCEEEEEeCCcEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence            2 35678888865555689999999999999999987654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.95  E-value=0.011  Score=50.19  Aligned_cols=87  Identities=15%  Similarity=0.151  Sum_probs=75.1

Q ss_pred             CCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcchhHHhccCCCCCCCCC
Q 010976          245 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVS  323 (496)
Q Consensus       245 ~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~  323 (496)
                      +.-+.++.++++.++....+.       .+..++|..++..++.+|. .-+.+|.|+..++++|+               
T Consensus        35 ~~vs~~t~F~YAw~Lv~S~~~-------~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~---------------   92 (144)
T 1y8m_A           35 PTATIQSRFNYAWGLIKSTDV-------NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE---------------   92 (144)
T ss_dssp             TTSCHHHHHHHHHHHHHSSSH-------HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTC---------------
T ss_pred             CCCcHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhh---------------
Confidence            356899999999999998876       5668999999999999884 56799999999999999               


Q ss_pred             cHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhhhc
Q 010976          324 PNELYSQSAIYIAAAHALKPSYSVYSSALRLVRS  357 (496)
Q Consensus       324 ~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~~~~  357 (496)
                          |..|..|.+..++.+|++........++.+
T Consensus        93 ----Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie~  122 (144)
T 1y8m_A           93 ----YSMAKRYVDTLFEHERNNKQVGALKSMVED  122 (144)
T ss_dssp             ----HHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence                999999999999999999976666555443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.91  E-value=0.0097  Score=49.80  Aligned_cols=84  Identities=15%  Similarity=0.171  Sum_probs=73.0

Q ss_pred             CCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcH
Q 010976          247 NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN  325 (496)
Q Consensus       247 ~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~  325 (496)
                      -.+++.++++.++.+..+.       .+...+|..++..++.+|. .-+.+|.|+..++++|+                 
T Consensus        38 vs~qt~F~yAw~Lv~S~~~-------~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgd-----------------   93 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDV-------NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE-----------------   93 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCH-------HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC-----------------
T ss_pred             CChhhHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhh-----------------
Confidence            3789999999999998775       5667999999999999984 47899999999999999                 


Q ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHhhh
Q 010976          326 ELYSQSAIYIAAAHALKPSYSVYSSALRLVR  356 (496)
Q Consensus       326 ~~~~~A~~~~~~a~~l~p~~~~y~~al~~~~  356 (496)
                        |..|..|.+..++.+|++........++.
T Consensus        94 --Y~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie  122 (134)
T 3o48_A           94 --YSMAKRYVDTLFEHERNNKQVGALKSMVE  122 (134)
T ss_dssp             --HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence              99999999999999999997666555544

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=96.82  E-value=0.001  Score=53.96  Aligned_cols=93  Identities=15%  Similarity=0.146  Sum_probs=62.3

Q ss_pred             hhhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCC
Q 010976          363 YLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT  442 (496)
Q Consensus       363 ~l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (496)
                      -...|+|....     .....|.++||+|....|..+.....                ......|+|..+..+....+. 
T Consensus         8 ~~~~G~L~K~~-----~~~~~Wk~RwfvL~~~~L~yyk~~~~----------------~~~~~~i~L~~~~~~~~~~~~-   65 (109)
T 1wgq_A            8 STMSGYLYRSK-----GSKKPWKHLWFVIKNKVLYTYAASED----------------VAALESQPLLGFTVTLVKDEN-   65 (109)
T ss_dssp             CSCEEEEEEES-----STTSCCEEEEEEEETTEEEEESCTTC----------------SSCSEEEECSSEEEEECCCSS-
T ss_pred             CeEEEEEEeCC-----CCCCCceeEEEEEeCCEEEEECCCCc----------------CccCceEECCCCEEEECCCCC-
Confidence            34567776542     22458999999998766665433221                123456777776655543222 


Q ss_pred             CCCCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHH
Q 010976          443 LPPGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       443 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~  478 (496)
                       ...++|.|.+..+. .||.|+|.++++.|++||+.+
T Consensus        66 -~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a  101 (109)
T 1wgq_A           66 -SESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEG  101 (109)
T ss_dssp             -CSSSEEEEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             -CCCcEEEEEeCCCeEEEEECCCHHHHHHHHHHHHHH
Confidence             24578888866555 589999999999999999875

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=96.77  E-value=0.0024  Score=52.31  Aligned_cols=96  Identities=18%  Similarity=0.240  Sum_probs=62.4

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCC
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  443 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (496)
                      +..|+|....     .....|.++||+|....|..+.....                ......|+|.....++...+..-
T Consensus         9 ~~~G~L~K~g-----~~~~~Wk~R~fvL~~~~L~yy~~~~~----------------~~~~g~i~L~~~~v~~~~~~~~~   67 (118)
T 1v89_A            9 IKMGWLKKQR-----SIVKNWQQRYFVLRAQQLYYYKDEED----------------TKPQGCMYLPGCTIKEIATNPEE   67 (118)
T ss_dssp             EEEEEEEEEC-----SSSSCEEEEEEEEETTEEEEESSSSC----------------CSCSEEECSTTEEEEEECCCSSC
T ss_pred             cEEEEEEecC-----CCCCCccEEEEEEECCEEEEEeCCCC----------------CCceEEEECCCCEEEEcCcCccc
Confidence            4567776542     12347999999998776666433221                12344667766554433333334


Q ss_pred             CCCCeeeEeec-------CCc-eeeeecChhhhhhHHHHHHHHHH
Q 010976          444 PPGAGLCIETI-------HGP-VFLVADSWEALDGWLDAIRLVYT  480 (496)
Q Consensus       444 ~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~a~~~~~~  480 (496)
                      +..++|.|.+.       .+. .||.|+|.++++.|++||+.+..
T Consensus        68 ~~~~~f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~  112 (118)
T 1v89_A           68 AGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAG  112 (118)
T ss_dssp             CCCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCcceEEEECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHHc
Confidence            56788888872       333 48999999999999999998753

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.76  E-value=0.093  Score=54.63  Aligned_cols=147  Identities=11%  Similarity=-0.009  Sum_probs=113.0

Q ss_pred             hhhhcHHHHHHHHHHhhccc----hh-------hh---------HhhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Q 010976          109 QLAEQNNAAMELINSVTGVD----EE-------GR---------SRQRILTFAAKRYANAIERN-PEDYDALYNWALVLQ  167 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~l~~~----~~-------~~---------~~~g~~~~Ai~~~~~al~~~-P~~~~a~~~lg~~~~  167 (496)
                      ...|+.++|+.++..+....    ..       ++         ...+.+++|...|++..... .-+...|..+-..|.
T Consensus        37 ~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~  116 (501)
T 4g26_A           37 SKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV  116 (501)
T ss_dssp             TTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            35677888888887766532    00       11         12356899999999987764 236788999999999


Q ss_pred             HhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc--
Q 010976          168 ESADNVSLDSTSPSKDALLEEACKKYDEATRLC-PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL--  244 (496)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l--  244 (496)
                      +.|+              +++|.+.|++..+.. .-+...|..+-.+|..    .|+.++|.       +.|++..+.  
T Consensus       117 ~~g~--------------~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~----~g~~~~A~-------~l~~~M~~~G~  171 (501)
T 4g26_A          117 AKDD--------------PEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR----KGDADKAY-------EVDAHMVESEV  171 (501)
T ss_dssp             HHTC--------------HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHTTC
T ss_pred             hcCC--------------HHHHHHHHHHHHHcCCCCccceehHHHHHHHH----CCCHHHHH-------HHHHHHHhcCC
Confidence            9999              999999999988762 2267788888889999    99999999       566665544  


Q ss_pred             CCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh--cCC
Q 010976          245 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL--QFD  291 (496)
Q Consensus       245 ~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l--~P~  291 (496)
                      .| +...|+.+-.+|.+.|+.          ++|...|++.-+.  .|+
T Consensus       172 ~P-d~~ty~~Li~~~~~~g~~----------d~A~~ll~~Mr~~g~~ps  209 (501)
T 4g26_A          172 VP-EEPELAALLKVSMDTKNA----------DKVYKTLQRLRDLVRQVS  209 (501)
T ss_dssp             CC-CHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHTSSBC
T ss_pred             CC-CHHHHHHHHHHHhhCCCH----------HHHHHHHHHHHHhCCCcC
Confidence            34 678899999999999999          9999999987664  454

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.76  E-value=0.023  Score=48.52  Aligned_cols=125  Identities=10%  Similarity=0.032  Sum_probs=94.0

Q ss_pred             HhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHccCcchHH
Q 010976          198 RLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--------SPQALNNWGLALQELSAIVPAR  269 (496)
Q Consensus       198 ~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~--------~~~a~~~lg~~l~~~g~~~~A~  269 (496)
                      -+.|++++.|......+..    .|+...- ..+++-++.|++|+..-|-        +...|.+.+.. ...++.    
T Consensus         7 ~~~p~~yd~W~~yl~llE~----~g~p~~d-~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~----   76 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEK----NSVPLSD-ALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEP----   76 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHH----HTCSCCH-HHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCG----
T ss_pred             eeCCCCHHHHHHHHHHHHH----cCCCchh-hHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCH----
Confidence            3689999999999988888    7888211 3344444788888765543        45566666654 455777    


Q ss_pred             HhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH-HH
Q 010976          270 EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS-VY  348 (496)
Q Consensus       270 ~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~-~y  348 (496)
                            ++|.+.|+.++++...++.+|...+..-..+|+                   ...|...+.+|+.+.|... ..
T Consensus        77 ------d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgn-------------------l~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           77 ------DDARDYFQMARANCKKFAFVHISFAQFELSQGN-------------------VKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             ------GGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHTTCBCHHHH
T ss_pred             ------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccc-------------------HHHHHHHHHHHhccCCCcHHHH
Confidence                  999999999999999998899988888888888                   7889999999999998755 56


Q ss_pred             HHHHHhhhc
Q 010976          349 SSALRLVRS  357 (496)
Q Consensus       349 ~~al~~~~~  357 (496)
                      ..+++.++.
T Consensus       132 e~a~~nl~~  140 (161)
T 4h7y_A          132 EIALRNLNL  140 (161)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHhhhc
Confidence            666666544

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.74  E-value=0.00043  Score=58.49  Aligned_cols=96  Identities=18%  Similarity=0.320  Sum_probs=58.2

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhcccc-chhhhhhhccccccccccccCCCCCCCCCCCceeeeecC-ceeec---ccc
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVL-NHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVP-DIVSV---SAC  438 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~  438 (496)
                      +..|+|....     .....|+++||+| ....|..+......                ...-.|++. ++..+   ..|
T Consensus         9 ~~~G~L~K~g-----~~~k~WkkRwFVL~~~~~L~Yyk~~~~~----------------~~~g~i~l~~~~~~i~~~~~~   67 (130)
T 2d9v_A            9 VRGGWLWRQS-----SILRRWKRNWFALWLDGTLGYYHDETAQ----------------DEEDRVVIHFNVRDIKVGQEC   67 (130)
T ss_dssp             EEEEEEEEEC-----SSSCCEEEEEEEEETTTEEEEESSSSTT----------------SEEEEEECTTTEEEEEEGGGC
T ss_pred             eEEEEEEeec-----CccCCceeeEEEEccCCEEEEEeCCCCC----------------CcCceEecccceeEEeccccc
Confidence            4577776552     1235899999999 55555554322211                011122222 12222   234


Q ss_pred             cCCCC----CCCCeeeEeecCCce-eeeecChhhhhhHHHHHHHHHH
Q 010976          439 ADLTL----PPGAGLCIETIHGPV-FLVADSWEALDGWLDAIRLVYT  480 (496)
Q Consensus       439 ~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~  480 (496)
                      .++..    ...+.|.|.|.++.+ ||.|+|.++++.|+.||+-+..
T Consensus        68 ~~v~~~~~~~~~~~F~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a~~  114 (130)
T 2d9v_A           68 QDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANS  114 (130)
T ss_dssp             SSCCCCSSCCTTTEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             cccCCCCCCCcCcEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence            44332    245789888766655 8999999999999999998754

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=96.67  E-value=0.0019  Score=52.88  Aligned_cols=91  Identities=10%  Similarity=0.140  Sum_probs=63.6

Q ss_pred             hhhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCC
Q 010976          363 YLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT  442 (496)
Q Consensus       363 ~l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (496)
                      .+..|+|.....    .....|.++||+|....|..+.....                ......|+|..+..|++..   
T Consensus         8 ~~~~G~L~K~~~----~~~~~WkkR~fvL~~~~L~yy~~~~~----------------~~~~g~i~l~~~~~v~~~~---   64 (115)
T 2cod_A            8 KVKSGWLDKLSP----QGKRMFQKRWVKFDGLSISYYNNEKE----------------MYSKGIIPLSAISTVRVQG---   64 (115)
T ss_dssp             CCEEEEEEECCS----SSSSCCEEEEEEECSSEEEEEESSCC----------------SSCCCEEETTTEEEEEEET---
T ss_pred             ccEEEEEEEcCC----CCCCCCceEEEEEECCEEEEEcCCCC----------------cccCCEEECCcceEEEeCC---
Confidence            345788775422    12347999999998776665443222                1234568888877777543   


Q ss_pred             CCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHH
Q 010976          443 LPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  479 (496)
                         .++|.|.|.....||.|+|.++++.|++||+.+.
T Consensus        65 ---~~~F~i~~~~r~~~l~a~s~~e~~~Wi~~l~~~~   98 (115)
T 2cod_A           65 ---DNKFEVVTTQRTFVFRVEKEEERNDWISILLNAL   98 (115)
T ss_dssp             ---TTEEEEEESSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ---CCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence               5788888655556899999999999999999764

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A

Probab=96.53  E-value=0.0016  Score=53.00  Aligned_cols=95  Identities=20%  Similarity=0.266  Sum_probs=55.3

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhcccc-chhhhhhhccccccccccccCCCCCCCCCCCceeeeecCcee----ecccc
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVL-NHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIV----SVSAC  438 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  438 (496)
                      ...|+|.....     ....|.++||+| ....|..+.....                ......|++....    .+..|
T Consensus         6 ~~~G~L~K~g~-----~~k~WkkR~fvL~~~~~L~yyk~~~~----------------~~~~g~i~l~~~~i~l~~~~~v   64 (112)
T 3aj4_A            6 VKSGWLLRQST-----ILKRWKKNWFDLWSDGHLIYYDDQTR----------------QNIEDKVHMPMDCINIRTGQEC   64 (112)
T ss_dssp             SEEEEEEEECS-----SSCCEEEEEEEECTTSEEEEESSTTC----------------CSEEEEEEHHHHEEEEEEGGGC
T ss_pred             eEEEEEEeeCC-----CCCCeeceEEEEeeCCEEEEEcCCCC----------------CCCCccccccccceeecccccc
Confidence            34677765421     345899999999 5545544332211                1122334444211    11122


Q ss_pred             cCCCCC----CCCeeeEeecCCce-eeeecChhhhhhHHHHHHHHH
Q 010976          439 ADLTLP----PGAGLCIETIHGPV-FLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       439 ~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      ..+..+    ..++|.|.+..+.+ ||.|+|.++++.|++||+-+.
T Consensus        65 ~~v~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~  110 (112)
T 3aj4_A           65 RDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSR  110 (112)
T ss_dssp             CSCCCSTTCCGGGEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCCcCcEEEEEecCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence            222222    24578887655554 899999999999999998764

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A

Probab=96.48  E-value=0.0021  Score=53.58  Aligned_cols=97  Identities=18%  Similarity=0.240  Sum_probs=66.6

Q ss_pred             hhhhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCC
Q 010976          362 PYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL  441 (496)
Q Consensus       362 ~~l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (496)
                      .....|+|....     .....|.++||+|....|..+.....                ......|+|..+..|.+..+.
T Consensus        17 ~~~~~G~L~K~g-----~~~~~Wk~R~fvL~~~~L~yy~~~~~----------------~~~~g~i~L~~~~~v~~~~~~   75 (126)
T 1fao_A           17 LGTKEGYLTKQG-----GLVKTWKTRWFTLHRNELKYFKDQMS----------------PEPIRILDLTECSAVQFDYSQ   75 (126)
T ss_dssp             TTCEEEEEEEEC-----SSSCCEEEEEEEEETTEEEEESSTTC----------------SSCSEEEEGGGCCEEEEECSS
T ss_pred             CccEEEEEEEcC-----CCCCCcccEEEEEECCEEEEeCCCCC----------------CCceeEEEccceEEEEecccC
Confidence            446678887653     13457999999998776666442221                123556888877766654322


Q ss_pred             CCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHHHH
Q 010976          442 TLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTI  481 (496)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  481 (496)
                        ...++|.|.|.....||.|+|.++++.|++||+-+..-
T Consensus        76 --~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~  113 (126)
T 1fao_A           76 --ERVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQ  113 (126)
T ss_dssp             --SSSSEEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             --CCCCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence              24567888865555699999999999999999976543

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=96.48  E-value=0.0025  Score=51.47  Aligned_cols=94  Identities=20%  Similarity=0.253  Sum_probs=57.2

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchh--hhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCC
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHE--GLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL  441 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (496)
                      +..|+|.....     ....|.++||+|...  .|..+.....                ......|+|....-.......
T Consensus         8 ~~~G~L~K~g~-----~~~~Wk~R~fvL~~~~~~L~yyk~~~~----------------~~~~g~i~L~~~~v~~~~~~~   66 (109)
T 2i5f_A            8 IKQGCLLKQGH-----RRKNWKVRKFILREDPAYLHYYDPAGA----------------EDPLGAIHLRGCVVTSVESNS   66 (109)
T ss_dssp             EEEEEEEEECT-----TTCCEEEEEEEEETTTTEEEEECTTSC----------------SSCSEEEECTTCEEEEECC--
T ss_pred             eEEEEEEEcCC-----CCCCceEEEEEEeCCCcEEEEECCCCC----------------CCccEEEECCCCEEEEccCCc
Confidence            45677765421     234699999999864  4444322111                123445677663211111111


Q ss_pred             ---CCCCCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHH
Q 010976          442 ---TLPPGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       442 ---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~  478 (496)
                         .....++|.|.|..+. .+|.|+|.++++.|++||+.+
T Consensus        67 ~~~~~~~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~ai~~~  107 (109)
T 2i5f_A           67 NGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA  107 (109)
T ss_dssp             ------CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ccccCCCceEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence               1126688999887766 588999999999999999865

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.47  E-value=0.0048  Score=50.81  Aligned_cols=107  Identities=19%  Similarity=0.226  Sum_probs=72.6

Q ss_pred             hhhhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCC
Q 010976          362 PYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL  441 (496)
Q Consensus       362 ~~l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (496)
                      ..++.|+|...+......   .|+++||+|-...-.-+...|-....-  ..+.|    ......|.|.|=++|.+...-
T Consensus        11 ~~vk~G~L~~q~q~~fgk---KWrk~w~vLy~~S~~GvaRLE~yd~~e--k~~r~----~~~rrVIrLsdCisV~~~~~e   81 (127)
T 2d9w_A           11 GAVKQGFLYLQQQQTFGK---KWRRFGASLYGGSDCALARLELQEGPE--KPRRC----EAARKVIRLSDCLRVAEAGGE   81 (127)
T ss_dssp             CSSEEEEEEECBCSSSSC---BCCEEEEEEECCSSSSCCEEEEECCCS--CSSSC----SCCEEEECGGGEEEEEECCSC
T ss_pred             ccccceEEEecccchhhh---hhheeEEEEecCCCCCceeeeeeeccC--ccccC----CCCceEEEhhhCCeEecccCc
Confidence            346678888776433332   599999999766555544444432110  00111    134689999999999998776


Q ss_pred             -CCC-CCCeeeEeecCCceeeeecChhhhhhHHHHHHHH
Q 010976          442 -TLP-PGAGLCIETIHGPVFLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       442 -~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  478 (496)
                       +-| -.++|+|.|-....+|-|.+ ..++.|..+|-.+
T Consensus        82 ~~~pk~~~aF~l~T~er~~~laAe~-~E~~~Wi~~ic~~  119 (127)
T 2d9w_A           82 ASSPRDTSAFFLETKERLYLLAAPA-AERGDWVQAICLL  119 (127)
T ss_dssp             SSSCSSCEEEEEEESSCEEEEEECH-HHHHHHHHHHHHH
T ss_pred             cCCCCcceEEEEEeCCcEEEEEeCc-HHHHHHHHHHHHH
Confidence             667 55789999877766666665 5899999999765

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}

Probab=96.44  E-value=0.0036  Score=52.19  Aligned_cols=97  Identities=13%  Similarity=0.210  Sum_probs=62.0

Q ss_pred             hhhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeeccccc-CC
Q 010976          363 YLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACA-DL  441 (496)
Q Consensus       363 ~l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  441 (496)
                      .+..|+|.....    .....|.++||+|....|..+.....                ....-.|+|..+ .|..+. .-
T Consensus        21 ~~~~G~L~K~~~----~~~~~Wk~R~fvL~~~~L~yy~~~~~----------------~~~~g~i~L~~~-~v~~~~~~~   79 (128)
T 2dkp_A           21 VVRRGWLYKQDS----TGMKLWKKRWFVLSDLCLFYYRDEKE----------------EGILGSILLPSF-QIALLTSED   79 (128)
T ss_dssp             CCEEEEEEEECC----SSSCCEEEEEEEEETTEEEEESSTTC----------------CSEEEEECGGGS-EEEECCGGG
T ss_pred             cEEEEEEEEeCC----CCCCCceeEEEEEeCCEEEEECCCCC----------------cccceEEEcCce-EEEEcCCcc
Confidence            356788865432    12457999999998766665432221                122445666544 233222 12


Q ss_pred             CCCCCCeeeEeecCC-ceeeeecChhhhhhHHHHHHHHHH
Q 010976          442 TLPPGAGLCIETIHG-PVFLVADSWEALDGWLDAIRLVYT  480 (496)
Q Consensus       442 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~  480 (496)
                      .....++|.|.+..+ ..||.|+|.++++.|++||+.+..
T Consensus        80 ~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~  119 (128)
T 2dkp_A           80 HINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAAL  119 (128)
T ss_dssp             CCSSCSEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHHS
T ss_pred             cCCCCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            335668888887654 459999999999999999987754

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.39  E-value=0.0041  Score=51.36  Aligned_cols=99  Identities=17%  Similarity=0.192  Sum_probs=64.9

Q ss_pred             hhhhccccCCCCCCCCCChhhhhhhccccchh--hhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccC
Q 010976          363 YLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHE--GLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACAD  440 (496)
Q Consensus       363 ~l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (496)
                      -...|+|......   .....|.++||+|...  .|..+.....                ....-.|+|..+..+...  
T Consensus         8 ~~~~G~L~K~g~~---~~~k~WkkRwfvL~~~~~~L~Yy~~~~~----------------~~~~g~I~L~~~~~~~~~--   66 (119)
T 2dhk_A            8 KKLCGYLSKFGGK---GPIRGWKSRWFFYDERKCQLYYSRTAQD----------------ANPLDSIDLSSAVFDCKA--   66 (119)
T ss_dssp             CCCEEEEEECSCS---SSSCCCEEEEEEEETTTTEEEEESSTTC----------------CSCSEEEEGGGCEEEECT--
T ss_pred             CcEEEEEEecCCC---CCCCCceeEEEEEECCccEEEEECCCCC----------------cccccEEECCCCEEEecC--
Confidence            3456777655321   1245899999999876  4555432221                123456777777666431  


Q ss_pred             CCCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHHHHHhh
Q 010976          441 LTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYAR  484 (496)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  484 (496)
                        -...+.|.|.|..-..||.|+|.++++.|++||+.+.+-+..
T Consensus        67 --~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~  108 (119)
T 2dhk_A           67 --DAEEGIFEIKTPSRVITLKAATKQAMLYWLQQLQMKRWEFHN  108 (119)
T ss_dssp             --TGGGCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCCCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHHhcC
Confidence              124568888866444479999999999999999988766654

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A

Probab=96.33  E-value=0.0024  Score=53.37  Aligned_cols=98  Identities=19%  Similarity=0.231  Sum_probs=61.3

Q ss_pred             hhhhccccCCCCCCCCCChhhhhhhccccchh--hhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccC
Q 010976          363 YLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHE--GLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACAD  440 (496)
Q Consensus       363 ~l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (496)
                      -+..|+|.....     ....|.++||+|...  -|..+.....                ......|+|....-+.....
T Consensus        18 ~~~~G~L~K~g~-----~~~~Wk~R~fvL~~~~~~L~yy~~~~~----------------~~~~g~i~L~~~~v~~~~~~   76 (129)
T 1x05_A           18 IIKQGCLLKQGH-----RRKNWKVRKFILREDPAYLHYYDPAGA----------------EDPLGAIHLRGCVVTSVESN   76 (129)
T ss_dssp             EEEEEEEEECCS-----SCCCCEEEEEEEEETTTEEEEECSSCC----------------SSCSEEEECTTCEEEECCCC
T ss_pred             ceEEEEEEecCC-----CCCCCeeEEEEEeCCCCEEEEECCCCC----------------CcceeEEEccCCEEEEccCC
Confidence            455788876522     234699999999864  3444322111                12344677765332222111


Q ss_pred             C---CCCCCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHHHHH
Q 010976          441 L---TLPPGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLVYTI  481 (496)
Q Consensus       441 ~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~  481 (496)
                      .   .....+.|.|.|..+. .||.|+|.++++.|++||..+...
T Consensus        77 ~~~~~~~~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~  121 (129)
T 1x05_A           77 SNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMASRT  121 (129)
T ss_dssp             CCSSSCSSCSEEEEECTTCCCCEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             ccccccCCCeEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHc
Confidence            1   1125688888877665 589999999999999999987653

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*

Probab=96.32  E-value=0.0052  Score=50.74  Aligned_cols=97  Identities=21%  Similarity=0.230  Sum_probs=61.8

Q ss_pred             hhhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccC-C
Q 010976          363 YLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACAD-L  441 (496)
Q Consensus       363 ~l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  441 (496)
                      -+..|+|......    ....|.++||+|....|..+.....                ......|+|..+ .|..+.. .
T Consensus        11 ~~~~G~L~K~~~~----~~~~WkkR~fvL~~~~L~yy~~~~~----------------~~~~g~i~l~~~-~v~~~~~~~   69 (123)
T 1upq_A           11 VHIRGWLHKQDSS----GLRLWKRRWFVLSGHCLFYYKDSRE----------------ESVLGSVLLPSY-NIRPDGPGA   69 (123)
T ss_dssp             EEEEEEEEEECSS----SSCCEEEEEEEEETTEEEEESSTTC----------------CSCCEEEEGGGC-EEEECCSSC
T ss_pred             ceEEEEEEeeCCC----CCCCceeEEEEEeCCEEEEECCCCC----------------cccceEEECCCC-EEEECCCCc
Confidence            3457888755321    2347999999998766665432221                112445666654 2433332 2


Q ss_pred             CCCCCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHHHH
Q 010976          442 TLPPGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLVYT  480 (496)
Q Consensus       442 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~  480 (496)
                      .....+.|.|.+..+. .||.|+|.++++.|++||..+..
T Consensus        70 ~~~~~~~f~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~  109 (123)
T 1upq_A           70 PRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASR  109 (123)
T ss_dssp             TTSSSSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             cCCCcEEEEEECCCCeEEEEECCCHHHHHHHHHHHHHHHh
Confidence            2336778888766544 48899999999999999998764

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.28  E-value=0.0039  Score=51.44  Aligned_cols=96  Identities=20%  Similarity=0.237  Sum_probs=61.1

Q ss_pred             hhhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccC-C
Q 010976          363 YLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACAD-L  441 (496)
Q Consensus       363 ~l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  441 (496)
                      -...|+|.....    .....|.++||+|....|..+.....                ......|+|.++. |..+.. -
T Consensus        22 ~~~~G~L~K~~~----~~~~~Wk~R~fvL~~~~L~yy~~~~~----------------~~~~g~i~L~~~~-v~~~~~~~   80 (122)
T 2yry_A           22 VTKAGWLFKQAS----SGVKQWNKRWFVLVDRCLFYYKDEKE----------------ESILGSIPLLSFR-VAAVQPSD   80 (122)
T ss_dssp             EEEEEEEEEECC----SSSCCEEEEEEEEETTEEEEESSTTC----------------CSCCEEEESTTCC-CEECCTTC
T ss_pred             ccEEEEEEEECC----CCCCCcEEEEEEEeCCEEEEECCCCC----------------CCcccEEEcCCCE-EEEcCccc
Confidence            355788865421    12357999999998766665432221                1224466776643 332221 2


Q ss_pred             CCCCCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHHH
Q 010976          442 TLPPGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       442 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      .....++|.|.+..+. .||.|+|.++++.|++||+.+.
T Consensus        81 ~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~  119 (122)
T 2yry_A           81 NISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA  119 (122)
T ss_dssp             SCSSSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cCCcccEEEEecCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence            3345678888655544 4899999999999999998764

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.28  E-value=0.0055  Score=50.07  Aligned_cols=96  Identities=20%  Similarity=0.237  Sum_probs=60.8

Q ss_pred             hhhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccC-C
Q 010976          363 YLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACAD-L  441 (496)
Q Consensus       363 ~l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  441 (496)
                      -+..|+|.....    .....|.++||+|....|..+.....                ......|+|.++. |..+.. -
T Consensus        11 ~~~~G~L~K~~~----~~~~~Wk~R~fvL~~~~L~yy~~~~~----------------~~~~g~i~L~~~~-v~~~~~~~   69 (117)
T 2d9y_A           11 VTKAGWLFKQAS----SGVKQWNKRWFVLVDRCLFYYKDEKE----------------ESILGSIPLLSFR-VAAVQPSD   69 (117)
T ss_dssp             CCEEEEEEEECT----TSSSCEEEEEEEEETTEEEEESSTTC----------------CSCCEEEECSSCE-EEECCTTT
T ss_pred             eeEEEEEEEeCC----CCCCCceEEEEEECCCEEEEECCCCC----------------CCcCCEEEeCCeE-EEEcCccc
Confidence            345777765421    12357999999998766665432211                1224467776644 222211 2


Q ss_pred             CCCCCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHHH
Q 010976          442 TLPPGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       442 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      ..+..++|.|.+..+. .||.|+|.++++.|++||+.+.
T Consensus        70 ~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~  108 (117)
T 2d9y_A           70 NISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA  108 (117)
T ss_dssp             TCCCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred             cCCCccEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence            3446678888655544 5899999999999999998764

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}

Probab=96.23  E-value=0.0019  Score=50.85  Aligned_cols=89  Identities=17%  Similarity=0.157  Sum_probs=53.9

Q ss_pred             hccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCC
Q 010976          366 AGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPP  445 (496)
Q Consensus       366 ~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (496)
                      .|+|....     .....|.++||+|....|..+.......              ......|++..+..+..     -..
T Consensus         4 ~G~L~K~g-----~~~k~WkkR~FvL~~~~L~Yy~~~~~~~--------------~~~~~~i~l~~~~~~~~-----~~~   59 (94)
T 2rsg_A            4 CGVLSKWT-----NYIHGWQDRWVVLKNNALSYYKSEDETE--------------YGCRGSICLSKAVITPH-----DFD   59 (94)
T ss_dssp             EEEEEEES-----SSTTCEEEEEEEEETTEEEEESSTTGGG--------------TCCSEEEETTTCEEEEC-----SSC
T ss_pred             EEEEEEeC-----CCCCCceEEEEEEECCEEEEEEeccccc--------------ccceeeEecceeeeecC-----ccc
Confidence            56665431     2234799999999887776654332211              01123344443222111     124


Q ss_pred             CCeeeEeecCCceeeeecChhhhhhHHHHHHHH
Q 010976          446 GAGLCIETIHGPVFLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  478 (496)
                      .+.|.+.+.....||.|+|.++++.|++||..+
T Consensus        60 ~~~F~i~~~~r~~~l~A~s~~e~~~Wi~aLq~A   92 (94)
T 2rsg_A           60 ECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQH   92 (94)
T ss_dssp             SSEEEEEETTEEEEEECCSSCCTHHHHHHHHHH
T ss_pred             ceeEEEEeCCeEEEEECCCHHHHHHHHHHHHhh
Confidence            567888765444589999999999999999864

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=96.18  E-value=0.0056  Score=49.06  Aligned_cols=82  Identities=10%  Similarity=0.133  Sum_probs=55.0

Q ss_pred             hhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccC--CCCCCCCeeeEeecCCc-e
Q 010976          382 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACAD--LTLPPGAGLCIETIHGP-V  458 (496)
Q Consensus       382 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~  458 (496)
                      ..|.++||+|....|..+.....                ......|+|..+.. ..+.+  ......++|.|.+..+. .
T Consensus        21 ~~Wk~R~fvL~~~~L~yy~~~~~----------------~~~~g~i~L~~~~v-~~~~~~~~~~~~~~~F~i~~~~~r~~   83 (108)
T 1u5d_A           21 SEWQKRWCVVSRGLFYYYANEKS----------------KQPKGTFLIKGYSV-RMAPHLRRDSKKESCFELTSQDRRTY   83 (108)
T ss_dssp             EEEEEEEEEEETTEEEEESSTTC----------------SSCSEEEECTTCEE-EECGGGCSSGGGGGEEEEECSSSCCE
T ss_pred             cCceeeEEEEeCCEEEEecCCCC----------------CCCCEEEEecceEE-EeCCccccccCCcceEEEEcCCCcEE
Confidence            58999999998766665432221                12344577766653 22221  22235678888877644 5


Q ss_pred             eeeecChhhhhhHHHHHHHHHH
Q 010976          459 FLVADSWEALDGWLDAIRLVYT  480 (496)
Q Consensus       459 ~~~~~~~~~~~~~~~a~~~~~~  480 (496)
                      +|.|+|.++++.|++||+.+..
T Consensus        84 ~l~a~s~~e~~~Wi~ai~~~i~  105 (108)
T 1u5d_A           84 EFTATSPAEARDWVDQISFLLK  105 (108)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHH
Confidence            8999999999999999997754

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=96.16  E-value=0.0055  Score=51.62  Aligned_cols=93  Identities=14%  Similarity=0.129  Sum_probs=57.6

Q ss_pred             hhhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCC
Q 010976          363 YLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT  442 (496)
Q Consensus       363 ~l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (496)
                      -+..|+|....      ....|.++||+|....|..+-....                ......|+|....-++   ..+
T Consensus         8 v~k~GwL~K~g------~~k~WkrRWfVLk~~~L~yyk~~~~----------------~~p~G~I~L~~~~v~~---~~~   62 (130)
T 1v88_A            8 IVMADWLKIRG------TLKSWTKLWCVLKPGVLLIYKTQKN----------------GQWVGTVLLNACEIIE---RPS   62 (130)
T ss_dssp             CCEEEEEEECC------SSSSCEEEEEEEETTEEEEESCSSS----------------CCCCEEEECSSCEECC---CCT
T ss_pred             eEEEeEEEEeC------CCCCceEEEEEEECCEEEEECCCCC----------------CCceEEEEcCCCEEEE---CCC
Confidence            45678887642      3458999999998766665433222                1224456665433211   122


Q ss_pred             CCCCCeeeEeecCC-----------------------c-eeeeecChhhhhhHHHHHHHHHH
Q 010976          443 LPPGAGLCIETIHG-----------------------P-VFLVADSWEALDGWLDAIRLVYT  480 (496)
Q Consensus       443 ~~~~~~~~~~~~~~-----------------------~-~~~~~~~~~~~~~~~~a~~~~~~  480 (496)
                      -..++.|.|-+...                       . .||.|+|.++++.|++||+.+..
T Consensus        63 ~~~~~~F~i~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~  124 (130)
T 1v88_A           63 KKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALK  124 (130)
T ss_dssp             TTSSCEEEEECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEEcCCccccccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence            23456777653221                       1 36899999999999999998763

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*

Probab=96.09  E-value=0.0038  Score=59.43  Aligned_cols=97  Identities=20%  Similarity=0.225  Sum_probs=65.0

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchh-------hhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecc
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHE-------GLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVS  436 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (496)
                      ...|||...         ..|+++||+|...       .|..+.......      .     ........|+|.++.+|.
T Consensus        11 ~k~G~L~K~---------K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~------~-----~~~~p~g~I~L~~~~~V~   70 (264)
T 1qqg_A           11 RKVGYLRKP---------KSMHKRFFVLRAASEAGGPARLEYYENEKKWR------H-----KSSAPKRSIPLESCFNIN   70 (264)
T ss_dssp             EEEEEEECT---------TTCCEEEEEEECCBTTTBSSEEEEESSHHHHH------T-----TCSCCSEEEEGGGEEEEE
T ss_pred             cEEEEEEEC---------CCCEeEEEEEECCCCCCCCCEEEEECCCcccc------c-----cccCcceEEEeeceEEEE
Confidence            457887654         4899999999766       444432221100      0     001245678999888887


Q ss_pred             cccCCCCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHHHHH
Q 010976          437 ACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIY  482 (496)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  482 (496)
                      +..+  -...+.|.|.|.....||.|+|.++++.|++||.-+..=.
T Consensus        71 ~~~~--~~~~~~F~I~t~~rty~l~A~se~e~~~Wi~aL~~~~~~~  114 (264)
T 1qqg_A           71 KRAD--SKNKHLVALYTRDEHFAIAADSEAEQDSWYQALLQLHNRA  114 (264)
T ss_dssp             EECC--SSCSSEEEEEESSCEEEEECSSHHHHHHHHHHHHHHC---
T ss_pred             eccC--CCCCcEEEEEECCEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence            6654  2356788888776666999999999999999999875543

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.09  E-value=0.0073  Score=49.83  Aligned_cols=99  Identities=15%  Similarity=0.235  Sum_probs=61.8

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccch--hhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCC
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNH--EGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL  441 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (496)
                      ...|+|....     .....|.++||+|..  ..|..+.......              ....-.|+|..+. |.+..  
T Consensus         9 ~~~G~L~K~~-----~~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~~--------------~~~~g~I~L~~~~-v~~~~--   66 (120)
T 2d9x_A            9 NVYGYLMKYT-----NLVTGWQYRFFVLNNEAGLLEYFVNEQSRN--------------QKPRGTLQLAGAV-ISPSD--   66 (120)
T ss_dssp             CCEEEEEEEE-----ETTTEEEEEEEEECTTTCEEEEESSGGGSS--------------SCCSEEEECTTCC-EECCS--
T ss_pred             cEEEEEEecC-----CCCCCceEEEEEEECCCCEEEEEecCcccC--------------CCccceEEcceEE-EEecC--
Confidence            3467765442     124579999999974  3444433222210              0123456666543 33211  


Q ss_pred             CCCCCCeeeEeecCCce-eeeecChhhhhhHHHHHHHHHHHHhhcc
Q 010976          442 TLPPGAGLCIETIHGPV-FLVADSWEALDGWLDAIRLVYTIYARGK  486 (496)
Q Consensus       442 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~  486 (496)
                        ..++.|.|.|..+.+ ||.|+|.++++.|++||+.+......+.
T Consensus        67 --~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~~  110 (120)
T 2d9x_A           67 --EDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHHTEAI  110 (120)
T ss_dssp             --SSSSCEEECCSSSCCEEECCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             --CCCCEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHHhhhhh
Confidence              245788888766554 8889999999999999998877665544

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=96.07  E-value=0.004  Score=50.29  Aligned_cols=90  Identities=16%  Similarity=0.122  Sum_probs=55.6

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCC
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  443 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (496)
                      ...|+|...       ....|.++||+|....|..+......               ......|++... .|++..+  -
T Consensus         9 ~~~G~L~K~-------~~k~Wk~RwfvL~~~~L~yyk~~~~~---------------~~~~~~i~l~~~-~v~~~~~--~   63 (107)
T 2cof_A            9 ETSSYLNVL-------VNSQWKSRWCSVRDNHLHFYQDRNRS---------------KVAQQPLSLVGC-EVVPDPS--P   63 (107)
T ss_dssp             TTCCEEEEE-------ETTEEEEEEEEECSSCEEEECSSTTC---------------SEEEEEECTTTC-EEECCCB--T
T ss_pred             cEeEEEEEe-------cCCCcceEEEEEECCEEEEEeCCccc---------------CCCeeEEeccce-EEEECCC--C
Confidence            456777654       34589999999987766554322110               012333444321 1333322  1


Q ss_pred             CCCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHH
Q 010976          444 PPGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       444 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~  478 (496)
                      ...++|.|.+..+. .||.|+|.++++.|++||+-+
T Consensus        64 ~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~~   99 (107)
T 2cof_A           64 DHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSE   99 (107)
T ss_dssp             TBSCEEEEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCeEEEEEcCCHHHHHHHHHHHHHH
Confidence            25578888875344 499999999999999999854

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=96.05  E-value=0.0053  Score=51.22  Aligned_cols=95  Identities=24%  Similarity=0.369  Sum_probs=58.4

Q ss_pred             hhhhccccCCCCCCCCCChhhhhhhccccch--hhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccC
Q 010976          363 YLKAGYLTAPPAGIPVAPHSDWKRSQFVLNH--EGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACAD  440 (496)
Q Consensus       363 ~l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (496)
                      .+..|+|.....     ....|.++||+|..  .-|..+......               ......|+|... .|..+.+
T Consensus        18 ~~~~G~L~K~g~-----~~~~Wk~R~fvL~~d~~~L~yy~~~~~~---------------~~~~g~i~L~~~-~v~~~~~   76 (129)
T 1x1g_A           18 VVKQGYLAKQGH-----KRKNWKVRRFVLRKDPAFLHYYDPSKEE---------------NRPVGGFSLRGS-LVSALED   76 (129)
T ss_dssp             EEEEEEEEEECS-----SSSSEEEEEEEEEESSCEEEEECSSSCC---------------SSCSCCEESTTC-CCEECCS
T ss_pred             EEEEEEEEEECC-----CCCCeeeEEEEEeCCCCeEEEeCCCCcC---------------CccceEEECcCC-EEEEeCC
Confidence            355788776521     25589999999984  344443322110               112334555531 2222222


Q ss_pred             CCCC-------CCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHH
Q 010976          441 LTLP-------PGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       441 ~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~  478 (496)
                      ...|       ..+.|.|.|..+. .||.|+|.++++.|++||+.+
T Consensus        77 ~~~p~~~~~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~  122 (129)
T 1x1g_A           77 NGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKL  122 (129)
T ss_dssp             SSSCSSCSSCCCSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHH
T ss_pred             CCCcccccCCCCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence            2222       4578999887765 589999999999999999876

>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.94  E-value=0.011  Score=48.72  Aligned_cols=80  Identities=24%  Similarity=0.319  Sum_probs=59.8

Q ss_pred             hhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCC-CCC---CeeeEeecCCce
Q 010976          383 DWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL-PPG---AGLCIETIHGPV  458 (496)
Q Consensus       383 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~  458 (496)
                      .|+|.++.||...+.-... |.               .....-.|||.+|.+|+++.+.++ |+|   +.|.+.| ...+
T Consensus        23 ~rKRHYWrLD~K~Itlf~~-e~---------------~~k~ykeIpLseIL~v~~~~~~~~~~~~~~phcFEi~T-~~~~   85 (129)
T 2d9z_A           23 LRKRHYWRLDSKCLTLFQN-ES---------------GSKYYKEIPLSEILRISSPRDFTNISQGSNPHCFEIIT-DTMV   85 (129)
T ss_dssp             CCEEEEEEEESSCEEEESC-SS---------------CCSCCCEECTTTCCEECCTTCCCCSSSCSCCCSEEEEC-SSCE
T ss_pred             cccceeeEecCCeEEEEec-CC---------------CCceeceeeHHHhcccccccCccccCCCCCCceEEEEE-CCEE
Confidence            4777888888766554222 11               123466799999999999999886 555   8899986 6778


Q ss_pred             eeeecC----------------hhhhhhHHHHHHHHH
Q 010976          459 FLVADS----------------WEALDGWLDAIRLVY  479 (496)
Q Consensus       459 ~~~~~~----------------~~~~~~~~~a~~~~~  479 (496)
                      |+|.++                .+.+..|-.||+.+.
T Consensus        86 y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqAL  122 (129)
T 2d9z_A           86 YFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQAL  122 (129)
T ss_dssp             EEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHH
T ss_pred             EEEccCCCCCCCCccccccccchHHHHHHHHHHHHhc
Confidence            999873                478889999999865

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B

Probab=95.92  E-value=0.011  Score=48.31  Aligned_cols=85  Identities=14%  Similarity=0.133  Sum_probs=52.8

Q ss_pred             ChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCce-
Q 010976          380 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-  458 (496)
Q Consensus       380 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  458 (496)
                      ....|.++||+|....|..+......                .....|+|....+........-.+-++|.|.+.++.+ 
T Consensus        16 ~~k~Wk~rwfvL~~~~L~~yk~~~~~----------------~p~~~i~l~~~~~~~~~~~~~~~r~~~F~l~~~~~~~y   79 (112)
T 3cxb_B           16 GKEHWKTCFVVLSNGILYQYPDRTDV----------------IPLLSVNMGGEQCGGCRRANTTDRPHAFQVILSDRPCL   79 (112)
T ss_dssp             SCCCCEEEEEEEETTEEEEESSSSCC----------------SCSEEEETTC-CEEEEEECCCSSCTTEEEEEETTSCCE
T ss_pred             CCCCceEEEEEEECCEEEEECCCCCC----------------CccceEEecCCEEEeeeccCCCCCCeEEEEEcCCCCEE
Confidence            45689999999976666554332210                1123455553221100011223466889998777755 


Q ss_pred             eeeecChhhhhhHHHHHHHHHH
Q 010976          459 FLVADSWEALDGWLDAIRLVYT  480 (496)
Q Consensus       459 ~~~~~~~~~~~~~~~a~~~~~~  480 (496)
                      +|.|+|.++++.|+.||+.+..
T Consensus        80 ~f~A~s~ee~~~Wi~ai~~~~~  101 (112)
T 3cxb_B           80 ELSAESEAEMAEWMQHLCQAVS  101 (112)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHT
T ss_pred             EEEcCCHHHHHHHHHHHHHHhh
Confidence            8889999999999999987643

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=95.88  E-value=0.0077  Score=55.99  Aligned_cols=97  Identities=22%  Similarity=0.353  Sum_probs=64.1

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCC
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  443 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (496)
                      +..|+|..............|.++||+|....|..+.....                ......|+|..+..+....    
T Consensus        59 ~k~G~L~K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~~~----------------~~~~g~I~L~~~~~v~~~~----  118 (228)
T 3tfm_A           59 LKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSE----------------EKLKGTVEVRSAKEIIDNT----  118 (228)
T ss_dssp             SEEEEEEECGGGCSSSCGGGCEEEEEEECSSEEEEESSTTC----------------CSEEEEEEGGGCSEEEEET----
T ss_pred             ceEEEEEEECCCcCCcccCCceEEEEEEeCCEEEEEeCCCC----------------cceeEEEEcCCCEEeccCC----
Confidence            34566655432211112368999999998766655432211                1235578888776655332    


Q ss_pred             CCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHHH
Q 010976          444 PPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYT  480 (496)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  480 (496)
                      ...++|.|.|.....||.|+|.++++.|++||+-+..
T Consensus       119 ~k~~~F~I~t~~r~~~l~A~s~~e~~~Wv~aL~~~i~  155 (228)
T 3tfm_A          119 NKENGIDIIMADRTFHLIAESPEDASQWFSVLSQVHS  155 (228)
T ss_dssp             TTTSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             CCCcEEEEEcCCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            3567899987555569999999999999999998764

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.85  E-value=0.087  Score=52.92  Aligned_cols=95  Identities=9%  Similarity=-0.006  Sum_probs=78.5

Q ss_pred             hccHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPED----------------------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK  192 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~----------------------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  192 (496)
                      .|+.+.|+..+.+|+.+.-..                      ..+...++..+...|+              +.+++..
T Consensus       128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~--------------~~~a~~~  193 (388)
T 2ff4_A          128 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGR--------------ASAVIAE  193 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------HHHHHHH
Confidence            356677777777777764211                      1244456777788888              9999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010976          193 YDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN  247 (496)
Q Consensus       193 ~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~  247 (496)
                      +++++..+|-+-.+|..+-.+|..    .|+..+|++.|++....+..-+.++|.
T Consensus       194 l~~~~~~~P~~E~~~~~lm~al~~----~Gr~~~Al~~y~~~r~~L~~eLG~~P~  244 (388)
T 2ff4_A          194 LEALTFEHPYREPLWTQLITAYYL----SDRQSDALGAYRRVKTTLADDLGIDPG  244 (388)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999    999999999999999999888888885

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*

Probab=95.80  E-value=0.0084  Score=49.68  Aligned_cols=92  Identities=16%  Similarity=0.191  Sum_probs=55.5

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCC
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  443 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (496)
                      ...|+|.....     ....|.++||+|....|..+.....                ......|+|.++. |..+.+.  
T Consensus         6 ~~~G~L~K~g~-----~~~~Wk~R~fvL~~~~L~yy~~~~~----------------~~~~g~i~L~~~~-v~~~~~~--   61 (127)
T 1fgy_A            6 DREGWLLKLGG-----RVKTWKRRWFILTDNCLYYFEYTTD----------------KEPRGIIPLENLS-IREVLDP--   61 (127)
T ss_dssp             SEEEEEEEECS-----SSCCEEEEEEEEETTEEEEESSTTC----------------SSCSEEEECTTCE-EEEECCS--
T ss_pred             ceEeEEEEECC-----CCCCeEEEEEEEECCEEEEeCCCCC----------------CCcceEEECCceE-EEEccCC--
Confidence            34677765421     2357999999998776666443221                1223456666543 3322221  


Q ss_pred             CCCCeeeEeecCC----------------------ceeeeecChhhhhhHHHHHHHHH
Q 010976          444 PPGAGLCIETIHG----------------------PVFLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       444 ~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      ...++|.|.+..+                      ..||.|+|.++++.|++||+-+.
T Consensus        62 ~~~~~f~i~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i  119 (127)
T 1fgy_A           62 RKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASI  119 (127)
T ss_dssp             SCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEecCCccccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence            2345555554332                      24889999999999999998653

>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=95.78  E-value=0.0095  Score=48.99  Aligned_cols=80  Identities=26%  Similarity=0.424  Sum_probs=58.5

Q ss_pred             hhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCC-CCC---CeeeEeecCCce
Q 010976          383 DWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL-PPG---AGLCIETIHGPV  458 (496)
Q Consensus       383 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~  458 (496)
                      .|+|.+++||...+.-... +.               .......|||.+|.+|++|.+.++ |++   +.|.+.| ...+
T Consensus        23 ~rKRHYWrLD~K~Itlf~~-e~---------------~~~~ykeIpL~eIl~v~~~~~~~~l~~~~~~hcFEi~T-~~~~   85 (125)
T 2coa_A           23 LRKRHYWRLDCKCITLFQN-NT---------------TNRYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVT-ANAT   85 (125)
T ss_dssp             CCEEEEEEECSSEEEEESS-SS---------------CSSCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEEC-SSCC
T ss_pred             cccceeeEecCCeEEEEec-CC---------------CCceeeeeehhHeecccccccccccCCCCCCceEEEEe-CCeE
Confidence            5778888998776654322 11               123466899999999999999886 544   7788886 5678


Q ss_pred             eeeecC------h------hhhhhHHHHHHHHH
Q 010976          459 FLVADS------W------EALDGWLDAIRLVY  479 (496)
Q Consensus       459 ~~~~~~------~------~~~~~~~~a~~~~~  479 (496)
                      |+|..+      .      +.+..|-.||+...
T Consensus        86 yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqAL  118 (125)
T 2coa_A           86 YFVGEMPGGTPGGPSGQGAEAARGWETAIRQAL  118 (125)
T ss_dssp             CCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHG
T ss_pred             EEEccCCCCCCCCcCccccHHHHHHHHHHHhhc
Confidence            999874      2      44888999999763

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=95.76  E-value=0.012  Score=50.54  Aligned_cols=100  Identities=15%  Similarity=0.167  Sum_probs=62.7

Q ss_pred             hhhhccccCCCCCCCC-CChhhhhhhccccchh-----hhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecc
Q 010976          363 YLKAGYLTAPPAGIPV-APHSDWKRSQFVLNHE-----GLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVS  436 (496)
Q Consensus       363 ~l~~g~l~~~~~~~~~-~~~~~~~~~~~~l~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (496)
                      ....|||......... .....|.++||+|...     .|..+......               ......|+|..+..+.
T Consensus        18 ~~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~---------------~~~~g~I~L~~~~~~~   82 (150)
T 1wg7_A           18 ITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKIS---------------KEPKGSIFLDSCMGVV   82 (150)
T ss_dssp             CCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCS---------------SCCSEEECTTTCCEEC
T ss_pred             eeEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCCC---------------CCcCcEEecccCEEEe
Confidence            4567888765321100 1345899999999864     44443222100               1234467776655443


Q ss_pred             cccCCCCCCCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHHHH
Q 010976          437 ACADLTLPPGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLVYT  480 (496)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~  480 (496)
                      ..   +-...++|.|.|..+. .||.|+|.++++.|+.||+-+..
T Consensus        83 ~~---~~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~ai~  124 (150)
T 1wg7_A           83 QN---NKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQ  124 (150)
T ss_dssp             CC---CSSCTTEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cC---CCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            21   1246688999877654 58999999999999999998764

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A

Probab=95.76  E-value=0.0086  Score=47.75  Aligned_cols=80  Identities=13%  Similarity=0.165  Sum_probs=49.7

Q ss_pred             hhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCce-e
Q 010976          381 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-F  459 (496)
Q Consensus       381 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  459 (496)
                      ...|.++||+|....|..+....+..              ....-.|+|. ..+|.+..+    .+..|.|.+..+.+ +
T Consensus        12 ~k~Wk~R~fvL~~~~L~Yy~~~~~~~--------------~~~~g~i~L~-~~~v~~~~~----~~~~F~i~~~~~r~~~   72 (103)
T 3rcp_A           12 LTGWQPRWFVLDNGILSYYDSQDDVC--------------KGSKGSIKMA-VCEIKVHSA----DNTRMELIIPGEQHFY   72 (103)
T ss_dssp             TTCEEEEEEEEETTEEEEESSCC-----------------CCCSCEEEGG-GCEEECCTT----CSSEEEEEETTTEEEE
T ss_pred             CCCeeceEEEEECCEEEEEecCCccc--------------CCcccEEEee-eeEEEEcCC----CCceEEEEeCCCCEEE
Confidence            34799999999876666544332210              0113345553 333332211    35678777644444 8


Q ss_pred             eeecChhhhhhHHHHHHHHH
Q 010976          460 LVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       460 ~~~~~~~~~~~~~~a~~~~~  479 (496)
                      |.|+|.++++.|+.||+.+.
T Consensus        73 l~a~s~~e~~~Wi~al~~a~   92 (103)
T 3rcp_A           73 MKAVNAAERQRWLVALGSSK   92 (103)
T ss_dssp             EECSSHHHHHHHHHHHHTTS
T ss_pred             EECCCHHHHHHHHHHHHHHH
Confidence            89999999999999998653

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=95.60  E-value=0.012  Score=49.00  Aligned_cols=99  Identities=16%  Similarity=0.132  Sum_probs=58.4

Q ss_pred             hhhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccc---c
Q 010976          363 YLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSAC---A  439 (496)
Q Consensus       363 ~l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  439 (496)
                      -...|||.....    .....|+++||+|....|....-..-+.            ....+.-.|+|... .|+.|   .
T Consensus         8 ~~~~G~L~KqG~----~~~K~WKrRwFVL~~~~LyYfk~~~~~~------------~~~~p~G~I~L~g~-tV~~~~~~~   70 (126)
T 1wi1_A            8 MKHSGYLWAIGK----NVWKRWKKRFFVLVQVSQYTFAMCSYRE------------KKAEPQELLQLDGY-TVDYTDPQP   70 (126)
T ss_dssp             EEEEEEEEEECS----SSCCSCEEEEEEEEEEETTEEEEEECCS------------SSSCCSEEEECSSC-EEEECCCCS
T ss_pred             CceeEEEEEeCC----CcccccceEEEEEeCCEEEEEEcccccc------------cCCCCceEEECCCc-EEEEecCCc
Confidence            345788766521    1235899999999877777653000000            00122345666652 33332   2


Q ss_pred             CCCCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHH
Q 010976          440 DLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      +. ...-++|.+.+..-..||-|||.++++.|+.||.-+.
T Consensus        71 ~~-~~~k~~F~~v~~~~ty~~~Adseee~~~WikAi~~A~  109 (126)
T 1wi1_A           71 GL-EGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRAT  109 (126)
T ss_dssp             SC-CSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cc-ccCceEEEEecCCceEEEEcCCHHHHHHHHHHHHHHh
Confidence            21 2455777666433335888899999999999998653

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A

Probab=95.42  E-value=0.016  Score=53.19  Aligned_cols=100  Identities=11%  Similarity=0.149  Sum_probs=62.5

Q ss_pred             hhhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeeccccc-CC
Q 010976          363 YLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACA-DL  441 (496)
Q Consensus       363 ~l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  441 (496)
                      -.+.|||........ .....|.++||+|....|..+.....                ......|+|..+..+.... ..
T Consensus       106 v~k~G~L~Kkg~~~~-~~~k~WkkRwfVL~~~~L~Yyk~~~~----------------~~p~g~I~L~~~~~v~~~~~~~  168 (211)
T 1u5e_A          106 VIKAGYLEKRRKDHS-FLGFEWQKRWCALSKTVFYYYGSDKD----------------KQQKGEFAIDGYDVRMNNTLRK  168 (211)
T ss_dssp             EEEEEEEEEEEHHHH-TTTCCCEEEEEEEETTEEEEESSTTC----------------SSCSEEEECTTCEEEECGGGCS
T ss_pred             ccEEEEEEEECCCCC-cCCCCcEeEEEEEECCEEEEEcCCCC----------------ccceEEEEeCCcEEEEcCCccc
Confidence            355788765421100 01247999999998766665432221                1234567777666654321 11


Q ss_pred             CCCCCCeeeEeecCCce-eeeecChhhhhhHHHHHHHHH
Q 010976          442 TLPPGAGLCIETIHGPV-FLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       442 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      .-...++|.|.|..+.+ ||.|+|.++++.|++||+.+.
T Consensus       169 ~~~k~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~aL~~ai  207 (211)
T 1u5e_A          169 DGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL  207 (211)
T ss_dssp             STTGGGEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence            12235788888766555 789999999999999998764

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*

Probab=95.40  E-value=0.022  Score=47.72  Aligned_cols=93  Identities=22%  Similarity=0.272  Sum_probs=56.4

Q ss_pred             hhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCce-ee
Q 010976          382 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-FL  460 (496)
Q Consensus       382 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  460 (496)
                      ..|.++||+|....|..+-.......+    ...++ ....+...|+|.... +....|-+ ...++|.|.|.++.. +|
T Consensus        32 k~Wk~rwfvL~~~~L~yykd~~~~~~~----~~~~~-~~~~p~g~I~L~~~~-v~~~~~~~-kr~~~F~l~t~~~~~yl~  104 (129)
T 2p0d_A           32 KNWGPSWVVLTGNSLVFYREPPPTAPS----SGWGP-AGSRPESSVDLRGAA-LAHGRHLS-SRRNVLHIRTIPGHEFLL  104 (129)
T ss_dssp             CCCEEEEEEEESSEEEEESCC-------------------CCSEEEECTTCE-EEECTTSC-SSSSEEEEECTTSCEEEE
T ss_pred             CCceEEEEEEeCCEEEEEcCccccccc----ccccc-cCCCCccEEEeCCcE-EEECCCCC-CCCcEEEEEcCCCCEEEE
Confidence            589999999987766654433211100    00000 111234567776443 33222222 356899999888865 67


Q ss_pred             eecChhhhhhHHHHHHHHHHH
Q 010976          461 VADSWEALDGWLDAIRLVYTI  481 (496)
Q Consensus       461 ~~~~~~~~~~~~~a~~~~~~~  481 (496)
                      .|+|.++++.|+.||.-+..-
T Consensus       105 qA~s~~e~~~Wi~aI~~~i~~  125 (129)
T 2p0d_A          105 QSDHETELRAWHRALRTVIER  125 (129)
T ss_dssp             ECSCHHHHHHHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHh
Confidence            899999999999999977653

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A

Probab=95.37  E-value=0.012  Score=51.77  Aligned_cols=86  Identities=10%  Similarity=0.120  Sum_probs=48.8

Q ss_pred             ChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCcee
Q 010976          380 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVF  459 (496)
Q Consensus       380 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (496)
                      ....|.++||+|....|..+.......              ......|+|..+.++-..........++|.|.|.....|
T Consensus        25 ~~k~WkkRwfvL~~~~L~yyk~~~~~~--------------~~~~g~i~l~~~~~~~~~~~~~~~~~~~F~I~t~~r~~~   90 (168)
T 2j59_M           25 SIRPWKQMYVVLRGHSLYLYKDKREQT--------------TPSEEEQPISVNACLIDISYSETKRKNVFRLTTSDCECL   90 (168)
T ss_dssp             ---CCEEEEEEEETTEEEEESCTTCC----------------------CEECSSCEEEECSSSCSCSSEEEEECSSCEEE
T ss_pred             CCCCceEEEEEEeCCEEEEEECCcccc--------------cccCCceEecccceEEEeccccCCCCCEEEEEeCCceEE
Confidence            345799999999877766654332210              001122333321111001111123567899987765568


Q ss_pred             eeecChhhhhhHHHHHHHHH
Q 010976          460 LVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       460 ~~~~~~~~~~~~~~a~~~~~  479 (496)
                      |.|+|.++++.|++||+-+.
T Consensus        91 l~A~s~~e~~~Wi~ai~~~~  110 (168)
T 2j59_M           91 FQAEDRDDMLAWIKTIQESS  110 (168)
T ss_dssp             EECSSHHHHHHHHHHHHHHC
T ss_pred             EEcCCHHHHHHHHHHHHHHH
Confidence            99999999999999998764

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.32  E-value=0.078  Score=54.98  Aligned_cols=80  Identities=24%  Similarity=0.219  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH
Q 010976          206 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA  285 (496)
Q Consensus       206 a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A  285 (496)
                      .+..||.+...    ...+..|.       .+|.+|+.++|++...|+.||.+....|+.          -+|+-+|-++
T Consensus       154 ~l~~LGDL~RY----~~~~~~A~-------~~Y~~A~~~~P~~G~~~nqLavla~~~~~~----------l~a~y~y~rs  212 (497)
T 1ya0_A          154 CLVHLGDIARY----RNQTSQAE-------SYYRHAAQLVPSNGQPYNQLAILASSKGDH----------LTTIFYYCRS  212 (497)
T ss_dssp             HHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTBSHHHHHHHHHHHHTTCH----------HHHHHHHHHH
T ss_pred             HHHHcccHHHH----HHHHHHHH-------HHHHHHHHhCCCCCchHHHHHHHHhccccc----------HHHHHHHHHH
Confidence            45667777666    77776666       999999999999999999999999999998          8999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHc
Q 010976          286 IQLQFDFHRAIYNLGTVLYGL  306 (496)
Q Consensus       286 l~l~P~~~~a~~~lg~~~~~~  306 (496)
                      +.....++.+..||..++...
T Consensus       213 l~~~~Pf~~a~~nL~~~f~~~  233 (497)
T 1ya0_A          213 IAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HSSSBCCHHHHHHHHHHHHHH
T ss_pred             HhcCCCChhHHHHHHHHHHHH
Confidence            999888999999999988754

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A

Probab=95.30  E-value=0.016  Score=48.00  Aligned_cols=98  Identities=14%  Similarity=0.305  Sum_probs=58.9

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCC-
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT-  442 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  442 (496)
                      +..|+|.-..     .....|.++||+|...-|..+-..+...             -..+...|+|.+-.-..++.+-+ 
T Consensus         7 ~k~G~L~Kk~-----~~~k~W~~rwfVL~~~~L~yyK~~~~~~-------------d~~P~gsI~L~~c~v~~~~~~~~~   68 (120)
T 4a6h_A            7 IKSGFLERRS-----KFLKSYSKGYYVLTPNFLHEFKTADRKK-------------DLVPVMSLALSECTVTEHSRKNST   68 (120)
T ss_dssp             SEEEEEEEEE-----TTTTEEEEEEEEECSSEEEEESSCCTTT-------------CCSCSEEEEGGGEEEEEECCCCC-
T ss_pred             cEEEEEEEcC-----CCCCCCccEEEEEeCCEEEEEcCCCcCc-------------CCCceEEEECCCCEEEEccccccc
Confidence            4567776542     1345899999999877555443322110             01234567775433333222211 


Q ss_pred             -----CCCCCeeeEeecCC-------ceeeeecChhhhhhHHHHHHHHH
Q 010976          443 -----LPPGAGLCIETIHG-------PVFLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       443 -----~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~a~~~~~  479 (496)
                           .+.++.|.|.+.+.       ..+|.|+|.++++.|++||+-+-
T Consensus        69 ~~~~~~~~~~~F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~  117 (120)
T 4a6h_A           69 SSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILT  117 (120)
T ss_dssp             --------CCEEEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             ccccccCCCcEEEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence                 24677888876552       34999999999999999999763

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}

Probab=95.29  E-value=0.019  Score=48.11  Aligned_cols=101  Identities=19%  Similarity=0.249  Sum_probs=62.3

Q ss_pred             hhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceee--cccccCCC
Q 010976          365 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVS--VSACADLT  442 (496)
Q Consensus       365 ~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  442 (496)
                      ..|+|.....   ......|.++||+|....|..+..+++..             ...+...|+|..+..  |++..+-.
T Consensus         7 ~~G~L~K~~~---~~~~~~WkrRwfvL~~~~L~yyk~~~d~~-------------~~~p~g~I~L~~~~~~~v~~~~~~~   70 (134)
T 2y7b_A            7 ERGFLTIFED---VSGFGAWHRRWCVLSGNCISYWTYPDDEK-------------RKNPIGRINLANCTSRQIEPANREF   70 (134)
T ss_dssp             EEEEEEEEEE---ETTEEEEEEEEEEEETTEEEEESSHHHHT-------------TSCCSEEEEGGGBCSSSCEECCTTT
T ss_pred             EEeeEEEEcC---CCCCCCcEEEEEEEECCEEEEECCCCccc-------------ccCceEEEEhhhCccccccccchhh
Confidence            4567664411   12345899999999877776655433211             012345677776543  44443322


Q ss_pred             CCCCCeeeEeec-C---------------C----ceeeeecChhhhhhHHHHHHHHHHH
Q 010976          443 LPPGAGLCIETI-H---------------G----PVFLVADSWEALDGWLDAIRLVYTI  481 (496)
Q Consensus       443 ~~~~~~~~~~~~-~---------------~----~~~~~~~~~~~~~~~~~a~~~~~~~  481 (496)
                      ....++|.|.+. +               |    ..||.|+|.++++.|++||+-+..-
T Consensus        71 ~~~~~~F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~~  129 (134)
T 2y7b_A           71 CARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLVD  129 (134)
T ss_dssp             CCCTTEEEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            335567777652 1               1    2599999999999999999987543

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A

Probab=95.27  E-value=0.02  Score=49.07  Aligned_cols=99  Identities=13%  Similarity=0.197  Sum_probs=61.5

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCC--
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL--  441 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  441 (496)
                      +..|+|........ .....|.++||+|....|..+.....                ......|+|..+. +..+.+.  
T Consensus        18 ~~~G~L~K~g~~~~-~~~k~WkkR~fvL~~~~L~yyk~~~~----------------~~~~g~i~L~~~~-v~~~~~~~~   79 (148)
T 1u5f_A           18 IKAGYLEKRRKDHS-FLGFEWQKRWCALSKTVFYYYGSDKD----------------KQQKGEFAIDGYD-VRMNNTLRK   79 (148)
T ss_dssp             EEEEEEEEECCCSS-CSSCSEEEEEEEEETTEEEEESSTTC----------------SSCSEEEECTTCE-EEECTTSCS
T ss_pred             cEEEEEEEeCCCCC-CcCCCceeEEEEEECCEEEEEcCCCC----------------cccceEEEcCCcE-EEECCCccc
Confidence            45788876532211 01258999999998666655432211                1234456776653 3322221  


Q ss_pred             CCCCCCeeeEeecCCce-eeeecChhhhhhHHHHHHHHHH
Q 010976          442 TLPPGAGLCIETIHGPV-FLVADSWEALDGWLDAIRLVYT  480 (496)
Q Consensus       442 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~  480 (496)
                      .-...++|.|.|..+.+ ||.|+|.++++.|+.||+.+..
T Consensus        80 ~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~i~  119 (148)
T 1u5f_A           80 DGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQ  119 (148)
T ss_dssp             STTGGGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             CCCCccEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHH
Confidence            11234788888766555 7899999999999999998754

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A

Probab=95.18  E-value=0.016  Score=48.20  Aligned_cols=102  Identities=18%  Similarity=0.155  Sum_probs=61.3

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCC-CceeeeecCceeecccccCCC
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPD-RRAIRIEVPDIVSVSACADLT  442 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  442 (496)
                      .+.|+|....     .....|+++||+|....|............        ..+.+ ...-.|+|.... ++.+.+-.
T Consensus        13 ~k~G~L~K~g-----~~~k~Wk~RwfVL~~~~L~yyk~~~~~~~e--------~~plg~~~~G~I~L~~~~-v~~~~~~~   78 (124)
T 2w2x_D           13 KQQGELYMWD-----SIDQKWTRHFCAIADAKLSFSDDIEQTMEE--------DNPLGSLCRGILDLNTYN-VVKAPQGK   78 (124)
T ss_dssp             CCEEEEEEEE-----TTTTEEEEEEEEEETTEEEEEEEHHHHHHC--------SSCCCCSCSEEEEGGGEE-EEECTTCB
T ss_pred             ceeEEEEEEC-----CCCCCceEeEEEEECCEEEEEccccccccc--------ccccCCccccEEECCCCE-EEEccCCc
Confidence            3467776542     224579999999987777665543221000        01111 234567777554 44333322


Q ss_pred             CCCCCeeeEeecCC---ceeeeecChhhhhhHHHHHHHHH
Q 010976          443 LPPGAGLCIETIHG---PVFLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       443 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      ...-++|.|.+...   ..||.|+|.++++.|+.||+-+.
T Consensus        79 ~~k~~~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~  118 (124)
T 2w2x_D           79 NQKSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREIT  118 (124)
T ss_dssp             TTBSEEEEEEECC--CCCEEEEECCCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCceEEEEECCHHHHHHHHHHHHHHH
Confidence            33446788875443   34799999999999999999653

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.12  E-value=0.54  Score=44.17  Aligned_cols=119  Identities=12%  Similarity=-0.015  Sum_probs=86.0

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  211 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  211 (496)
                      ..+.|.+++|+......++.+|.|++....+-.++.-.|+              ++.|.+-++.+.+++|+....-..+.
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~--------------w~RA~~QL~~~a~l~p~~~~~a~~yr   72 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGD--------------FERADEQLMQSIKLFPEYLPGASQLR   72 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhCchhhHHHHHHH
Confidence            4567999999999999999999999999999999999999              99999999999999998755432222


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH---hcCC---CCHH---HHHHHHHHHHHccCcchHHHhhhhHHHHHHHH
Q 010976          212 IAISDRAKMRGRTKEAEELWKQATKNYEKAV---QLNW---NSPQ---ALNNWGLALQELSAIVPAREKQTIVRTAISKF  282 (496)
Q Consensus       212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al---~l~P---~~~~---a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~  282 (496)
                      .+...                   +.++..+   +..|   ..+.   ....-+......|+.          ++|...-
T Consensus        73 ~lI~a-------------------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~----------~~A~~lr  123 (273)
T 1zbp_A           73 HLVKA-------------------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDY----------EQVSELA  123 (273)
T ss_dssp             HHHHH-------------------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCH----------HHHHHHH
T ss_pred             HHHHH-------------------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCH----------HHHHHHH
Confidence            22211                   2333332   1112   1222   223334555566777          9999999


Q ss_pred             HHHHHhcCCCH
Q 010976          283 RAAIQLQFDFH  293 (496)
Q Consensus       283 ~~Al~l~P~~~  293 (496)
                      .+|++..|..+
T Consensus       124 ~~A~e~ap~~~  134 (273)
T 1zbp_A          124 LQIEELRQEKG  134 (273)
T ss_dssp             HHHHHHCCCCC
T ss_pred             HHHHhcCcccC
Confidence            99999887653

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}

Probab=95.05  E-value=0.026  Score=54.18  Aligned_cols=97  Identities=22%  Similarity=0.334  Sum_probs=56.8

Q ss_pred             hhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCc--eeecccc-cCC
Q 010976          365 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPD--IVSVSAC-ADL  441 (496)
Q Consensus       365 ~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~  441 (496)
                      ..|||.....     ....|.++||+|....|..+.......             +...-..+.+.+  |..+..+ ...
T Consensus       170 ~~G~L~k~~~-----~~k~WkkR~fvL~~~~L~yyk~~~~~~-------------~~~~i~l~~l~~~~v~~~~~~~~~~  231 (291)
T 3tca_A          170 LEGALYLKED-----GKKSWKRRYFLLRASGIYYVPKGKTKT-------------SRDLACFIQFENVNIYYGIQCKMKY  231 (291)
T ss_dssp             CEEEEEEECT-----TSSCEEEEEEEECSSEEEECCTTCCSS-------------TTTCEEEEEGGGCEEEEECSHHHHH
T ss_pred             eEEEEEEeCC-----CCCCceEEEEEEeCCEEEEEecCcccc-------------ccCceeeccceeEEEEecCcccccc
Confidence            4677765522     234799999999887776643322210             011111112221  1111111 113


Q ss_pred             CCCCCCeeeEeecCC------ceeeeecChhhhhhHHHHHHHHH
Q 010976          442 TLPPGAGLCIETIHG------PVFLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       442 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      ..|..++|+|-+...      ..||.|+|.++++.|+.||+++-
T Consensus       232 ~~~~~~~F~i~~~~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak  275 (291)
T 3tca_A          232 KAPTDHCFVLKHPQIQKESQYIKYLCCDDARTLSQWVMGIRIAK  275 (291)
T ss_dssp             CCSSSCEEEEECTTCCSCCTTSEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEcCCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence            556778999875432      14899999999999999999874

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.95  E-value=0.033  Score=45.33  Aligned_cols=93  Identities=13%  Similarity=0.224  Sum_probs=55.6

Q ss_pred             hhhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCC
Q 010976          363 YLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT  442 (496)
Q Consensus       363 ~l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (496)
                      -...|+|......    ....|.++||+|....|..+......                 ....|.+... .|.+..+  
T Consensus        10 ~~~~G~L~K~~~~----~~k~WkkR~fvL~~~~L~yyk~~~~~-----------------~~~~i~l~~~-~v~~~~~--   65 (114)
T 2da0_A           10 SEKKGYLLKKSDG----IRKVWQRRKCSVKNGILTISHATSNR-----------------QPAKLNLLTC-QVKPNAE--   65 (114)
T ss_dssp             SCEEEEEEEECSS----SCCCEEEEEEEEETTEEEECCSSCCS-----------------CCEEEETTTS-EEEECSS--
T ss_pred             ccEEEEEEEeCCC----CCCCceeEEEEEeCCEEEEEcCCCCC-----------------CCCEEEeeee-EEEECCC--
Confidence            3457777765321    22589999999976666654331110                 1112222111 1221111  


Q ss_pred             CCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHHHH
Q 010976          443 LPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTI  481 (496)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  481 (496)
                        ..++|.|.|.....||.|+|.++++.|++||+-+..-
T Consensus        66 --~~~~F~I~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~  102 (114)
T 2da0_A           66 --DKKSFDLISHNRTYHFQAEDEQDYVAWISVLTNSKEE  102 (114)
T ss_dssp             --SSSCEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             --CCCEEEEEcCCcEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence              3467888765444599999999999999999976543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.90  E-value=0.23  Score=54.13  Aligned_cols=88  Identities=15%  Similarity=-0.013  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcc
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ--LNWNSPQALNNWGLALQELS  263 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g  263 (496)
                      +++|.+..+     .-++...|.++|..+..    .|+++.|+.+|.++ ..|..+..  ....+...+..++......|
T Consensus       668 ~~~A~~~~~-----~~~~~~~W~~la~~al~----~~~~~~A~~~y~~~-~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~  737 (814)
T 3mkq_A          668 LTLARDLLT-----DESAEMKWRALGDASLQ----RFNFKLAIEAFTNA-HDLESLFLLHSSFNNKEGLVTLAKDAETTG  737 (814)
T ss_dssp             HHHHHHHHT-----TCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHH-TCHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHH-----hhCcHhHHHHHHHHHHH----cCCHHHHHHHHHHc-cChhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            888877653     33678899999999999    99999999877764 22332221  12556777778888888888


Q ss_pred             CcchH---HHhhhhHHHHHHHHH
Q 010976          264 AIVPA---REKQTIVRTAISKFR  283 (496)
Q Consensus       264 ~~~~A---~~~~~~~~~Ai~~~~  283 (496)
                      ++..|   +...|++++|++.|.
T Consensus       738 ~~~~A~~~~~~~g~~~~a~~~~~  760 (814)
T 3mkq_A          738 KFNLAFNAYWIAGDIQGAKDLLI  760 (814)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCHHHHHHHHH
Confidence            88433   223444455554443

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A

Probab=94.87  E-value=0.0072  Score=50.17  Aligned_cols=96  Identities=15%  Similarity=0.207  Sum_probs=55.2

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchh-hhhhhccccccccccccCCCCCCCCCCCceeeeecCceeeccc-ccCC
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHE-GLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSA-CADL  441 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  441 (496)
                      ...|+|.....     ....|.++||+|... .|..+......                .....|||..+.-+.. +...
T Consensus         9 ~~~G~L~K~g~-----~~k~WkkRwfvL~~~~~L~yy~~~~~~----------------~~~g~i~L~~~~~~~~~~~~~   67 (125)
T 1unq_A            9 VKEGWLHKRGE-----YIKTWRPRYFLLKNDGTFIGYKERPQD----------------VDQREAPLNNFSVAQCQLMKT   67 (125)
T ss_dssp             EEEEEEEEECS-----SSCCEEEEEEEEETTSEEEEESSCCCS----------------HHHHTSCSEEEECTTCEEEEE
T ss_pred             eEEeeEEeccC-----CccCccCcEEEEecCCEEEEEeCCCCC----------------CCCceeEccceeEEeeeeccc
Confidence            45788765421     245799999999843 44433221110                0122345544332211 0001


Q ss_pred             CCCCCCeeeEeec---CCc-eeeeecChhhhhhHHHHHHHHHH
Q 010976          442 TLPPGAGLCIETI---HGP-VFLVADSWEALDGWLDAIRLVYT  480 (496)
Q Consensus       442 ~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~a~~~~~~  480 (496)
                      .-+..++|.|.+.   .+. .||.|+|.++++.|++||+-+..
T Consensus        68 ~~~~~~~F~I~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~  110 (125)
T 1unq_A           68 ERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVAD  110 (125)
T ss_dssp             CSSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEEecCCCCceeEEEEeCCHHHHHHHHHHHHHHHh
Confidence            1235577887753   222 48999999999999999997754

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.87  E-value=0.15  Score=52.83  Aligned_cols=80  Identities=20%  Similarity=0.256  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 010976          158 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN  237 (496)
Q Consensus       158 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~  237 (496)
                      .+..+|.+......              +..|..+|.+|+.++|++...|+.||.+...    .|+.-+|+       -+
T Consensus       154 ~l~~LGDL~RY~~~--------------~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~----~~~~l~a~-------y~  208 (497)
T 1ya0_A          154 CLVHLGDIARYRNQ--------------TSQAESYYRHAAQLVPSNGQPYNQLAILASS----KGDHLTTI-------FY  208 (497)
T ss_dssp             HHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH----TTCHHHHH-------HH
T ss_pred             HHHHcccHHHHHHH--------------HHHHHHHHHHHHHhCCCCCchHHHHHHHHhc----ccccHHHH-------HH
Confidence            45567777777777              8999999999999999999999999999999    99999998       78


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHc
Q 010976          238 YEKAVQLNWNSPQALNNWGLALQEL  262 (496)
Q Consensus       238 ~~~Al~l~P~~~~a~~~lg~~l~~~  262 (496)
                      |-+++....-++.+..|+..++...
T Consensus       209 y~rsl~~~~Pf~~a~~nL~~~f~~~  233 (497)
T 1ya0_A          209 YCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCChhHHHHHHHHHHHH
Confidence            8888877766888888888887653

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1

Probab=94.81  E-value=0.023  Score=46.95  Aligned_cols=91  Identities=9%  Similarity=0.175  Sum_probs=55.9

Q ss_pred             ChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCce-
Q 010976          380 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-  458 (496)
Q Consensus       380 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  458 (496)
                      ....|.++||+|....|..+.........    +  +...  .....|+|... .++.+.|. -...++|+|.|.++.+ 
T Consensus        28 ~~~~Wk~rw~vL~~~~L~~yk~~~~~~~~----~--~~~~--~~~~~i~L~~~-~v~~~~d~-~kr~~~F~l~t~~~~~~   97 (122)
T 1dro_A           28 SNRSWDKVYMAAKAGRISFYKDQKGYKSN----P--ELTF--RGEPSYDLQNA-AIEIASDY-TKKKHVLRVKLANGALF   97 (122)
T ss_dssp             CCCCCEEEEEEESSSCCBEESSSSHHHHC----T--TCCS--SCCCBCCCSSC-CCEECCSS-SSSTTEEEEECSSSCEE
T ss_pred             CCCCccEEEEEEECCEEEEEeCCcccccC----C--Cccc--CCCceEECCCC-EEEeCCCC-CCCCeEEEEEEcCCCEE
Confidence            45689999999987766655443332100    0  0000  00123444322 23333333 2467899999878776 


Q ss_pred             eeeecChhhhhhHHHHHHHHHH
Q 010976          459 FLVADSWEALDGWLDAIRLVYT  480 (496)
Q Consensus       459 ~~~~~~~~~~~~~~~a~~~~~~  480 (496)
                      +|-|+|.+++..|+.||.-+..
T Consensus        98 lfqA~s~~e~~~Wi~ai~~~i~  119 (122)
T 1dro_A           98 LLQAHDDTEMSQWVTSLKAQSD  119 (122)
T ss_dssp             EEECSSSHHHHHHHHHHHHHHT
T ss_pred             EEECCCHHHHHHHHHHHHHHHH
Confidence            6789999999999999997643

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=94.79  E-value=0.037  Score=45.66  Aligned_cols=88  Identities=13%  Similarity=0.172  Sum_probs=53.9

Q ss_pred             hhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCce-e
Q 010976          381 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-F  459 (496)
Q Consensus       381 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  459 (496)
                      ...|.++||+|....|..+........        |....  ....|++... .++.+.+. -...++|.|.|.++.+ +
T Consensus        29 ~~~Wk~rwfvL~~~~L~yyk~~~~~~~--------~~~~~--~~~~i~l~~~-~~~~~~~~-~~r~~~F~i~~~~~~~~~   96 (123)
T 1wjm_A           29 NRSWQNVYCVLRRGSLGFYKDAKAASA--------GVPYH--GEVPVSLARA-QGSVAFDY-RKRKHVFKLGLQDGKEYL   96 (123)
T ss_dssp             CCCCEEEEEEEETTEEEEESSHHHHTT--------TCBSS--SCCCEECTTC-EEEECTTC-SSCSSEEEEECSSSCEEE
T ss_pred             CCCccEEEEEEECCEEEEEEccccccc--------CcccC--CCceEEccCc-EEeecccc-cCCCCEEEEEEcCCcEEE
Confidence            458999999998777665543322110        00000  1123344321 12222221 2367899999888765 7


Q ss_pred             eeecChhhhhhHHHHHHHHHH
Q 010976          460 LVADSWEALDGWLDAIRLVYT  480 (496)
Q Consensus       460 ~~~~~~~~~~~~~~a~~~~~~  480 (496)
                      |.|+|.+++..|++||..+..
T Consensus        97 f~A~s~~e~~~Wi~ai~~~~~  117 (123)
T 1wjm_A           97 FQAKDEAEMSSWLRVVNAAIA  117 (123)
T ss_dssp             EECSSHHHHHHHHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHh
Confidence            899999999999999997654

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}

Probab=94.61  E-value=0.029  Score=46.74  Aligned_cols=37  Identities=24%  Similarity=0.314  Sum_probs=30.3

Q ss_pred             CCCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHHHH
Q 010976          444 PPGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLVYT  480 (496)
Q Consensus       444 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~  480 (496)
                      ...+.|.|-|..+. .||.|+|.++++.|++||+-+..
T Consensus        87 ~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i~  124 (128)
T 2rlo_A           87 EENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQIL  124 (128)
T ss_dssp             CCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            45678888877754 49999999999999999987654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.52  E-value=0.43  Score=51.92  Aligned_cols=121  Identities=12%  Similarity=-0.038  Sum_probs=72.5

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh--------CCCCHH
Q 010976          134 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--------CPTLHD  205 (496)
Q Consensus       134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--------~P~~~~  205 (496)
                      ..|++++|.+..+     ..++...|..+|..+.+.++              ++.|+++|.++=..        ..++.+
T Consensus       664 ~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~--------------~~~A~~~y~~~~d~~~l~~l~~~~~~~~  724 (814)
T 3mkq_A          664 KVGQLTLARDLLT-----DESAEMKWRALGDASLQRFN--------------FKLAIEAFTNAHDLESLFLLHSSFNNKE  724 (814)
T ss_dssp             HHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHTCHHHHHHHHHHTTCHH
T ss_pred             hcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCC--------------HHHHHHHHHHccChhhhHHHHHHcCCHH
Confidence            3577777776643     34688999999999999999              99999999987221        122333


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchH---HHhhhhHHHHHHHH
Q 010976          206 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA---REKQTIVRTAISKF  282 (496)
Q Consensus       206 a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A---~~~~~~~~~Ai~~~  282 (496)
                      .+..++.....    .|++..|.                            .++.+.|++++|   +.+.+++++|+..-
T Consensus       725 ~~~~~~~~a~~----~~~~~~A~----------------------------~~~~~~g~~~~a~~~~~~~~~~~~A~~lA  772 (814)
T 3mkq_A          725 GLVTLAKDAET----TGKFNLAF----------------------------NAYWIAGDIQGAKDLLIKSQRFSEAAFLG  772 (814)
T ss_dssp             HHHHHHHHHHH----TTCHHHHH----------------------------HHHHHHTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHH----cCchHHHH----------------------------HHHHHcCCHHHHHHHHHHcCChHHHHHHH
Confidence            33333333333    44444444                            223344555444   23445558887765


Q ss_pred             HHHHHhcCCC---HHHHHHHHHHHHHcch
Q 010976          283 RAAIQLQFDF---HRAIYNLGTVLYGLAE  308 (496)
Q Consensus       283 ~~Al~l~P~~---~~a~~~lg~~~~~~g~  308 (496)
                      ++   ..|..   ..+....+.-+...|+
T Consensus       773 ~~---~~~~~~~i~~~~~~~~~~L~~~~~  798 (814)
T 3mkq_A          773 ST---YGLGDNEVNDIVTKWKENLILNGK  798 (814)
T ss_dssp             HH---TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred             HH---hCCChHHHHHHHHHHHHHHHhccc
Confidence            53   55544   2455555666666665

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=94.51  E-value=0.036  Score=55.69  Aligned_cols=98  Identities=13%  Similarity=0.155  Sum_probs=62.8

Q ss_pred             hhhhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeec---ccc
Q 010976          362 PYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSV---SAC  438 (496)
Q Consensus       362 ~~l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  438 (496)
                      ..++.|+|......    ....|.++||+|....|..+......                .....|+|..+..+   ..+
T Consensus       268 ~~~k~G~L~K~g~~----~~k~WKkRwFVL~~~~L~YYk~~~d~----------------~~~G~I~L~~~~~~~~v~~~  327 (386)
T 3lju_X          268 NYLKEGYMEKTGPK----QTEGFRKRWFTMDDRRLMYFKDPLDA----------------FARGEVFIGSKESGYTVLHG  327 (386)
T ss_dssp             CCSEEEEEEECCTT----SCSCCEEEEEEEETTEEEEESSTTCS----------------BCSEEEECCCGGGTCEEEES
T ss_pred             ccceeeeEEEECCC----CCCCCcccEEEEECCEEEEEecCCCc----------------ccceEEEeecceeeeeeccc
Confidence            34668888765322    12579999999997777765432221                12345666554443   222


Q ss_pred             cCCCCCC---CCeeeEeecCCceeeeecChhhhhhHHHHHHHHH
Q 010976          439 ADLTLPP---GAGLCIETIHGPVFLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       439 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      ...+...   .++|.|.|..-..||.|+|.++++.|++||+-|.
T Consensus       328 ~~~~~~~~~~~~~F~I~t~~rty~l~A~s~~e~~~Wi~aL~~~i  371 (386)
T 3lju_X          328 FPPSTQGHHWPHGITIVTPDRKFLFACETESDQREWVAAFQKAV  371 (386)
T ss_dssp             CCTTCCSCCSCEEEEEECSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCccccccCCCcEEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence            2222211   4778888665445999999999999999999764

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A

Probab=94.49  E-value=0.032  Score=44.46  Aligned_cols=86  Identities=13%  Similarity=0.224  Sum_probs=50.4

Q ss_pred             ChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCce-
Q 010976          380 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-  458 (496)
Q Consensus       380 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  458 (496)
                      ....|.++||+|....|..+........        +..  ......|++.... ++...+ .-...++|.|.|.++.+ 
T Consensus        19 ~~~~Wk~rwfvL~~~~L~yyk~~~~~~~--------~~~--~~~~~~i~l~~~~-~~~~~~-~~~~~~~F~i~~~~~~~~   86 (106)
T 1btn_A           19 SSRSWHNVYCVINNQEMGFYKDAKSAAS--------GIP--YHSEVPVSLKEAI-CEVALD-YKKKKHVFKLRLSDGNEY   86 (106)
T ss_dssp             SCCCCEEEEEEEETTEEEEESSHHHHHH--------TCC--SSSCCCEECTTCE-EEECSS-CCSSSSEEEEECTTSCEE
T ss_pred             CCCChhEEEEEEECCEEEEEeCCccccc--------CCC--CCCcceEECCCCE-EEEccc-ccCCccEEEEEecCCCEE
Confidence            3457999999998776665543322110        000  0112233433211 111111 12356789998777655 


Q ss_pred             eeeecChhhhhhHHHHHHH
Q 010976          459 FLVADSWEALDGWLDAIRL  477 (496)
Q Consensus       459 ~~~~~~~~~~~~~~~a~~~  477 (496)
                      ||.|+|.+++..|++||+-
T Consensus        87 ~~~A~s~~e~~~Wi~ai~~  105 (106)
T 1btn_A           87 LFQAKDDEEMNTWIQAISS  105 (106)
T ss_dssp             EEECSSHHHHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHhc
Confidence            8899999999999999973

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=94.12  E-value=0.068  Score=43.55  Aligned_cols=92  Identities=17%  Similarity=0.207  Sum_probs=54.5

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchhh---hhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccC
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEG---LQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACAD  440 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (496)
                      +..|||....  .    ...|.++||+|-...   |..+....+                ..+...|||... .|..+..
T Consensus         9 ~~~G~L~k~~--~----~~~WkkrWfVL~~~~~~~Ly~Yk~~~d----------------~~p~g~I~L~g~-~V~~~~~   65 (112)
T 2coc_A            9 LLCGPLRLSE--S----GETWSEVWAAIPMSDPQVLHLQGGSQD----------------GRLPRTIPLPSC-KLSVPDP   65 (112)
T ss_dssp             SSEEEEEEES--S----SSCEEEEEEECCTTCTTCEEEECCTTC----------------SSSCSEECGGGC-EEECCCS
T ss_pred             eEEEEEEecC--C----CCCceEEEEEEECCCccEEEEECCCCc----------------cCcceEEEcCCC-EEEecCc
Confidence            3457776531  1    457999999997532   333222211                123446666544 3332222


Q ss_pred             CCCC-CCCeeeEeecCCce-eeeecChhhhhhHHHHHHHHH
Q 010976          441 LTLP-PGAGLCIETIHGPV-FLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       441 ~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      ..-+ ..++|.|- ..+-+ ||.|+|.++++.|+.+|..+.
T Consensus        66 ~~~~~~~~~Fki~-~~~~~y~f~A~s~e~~~~Wl~al~~A~  105 (112)
T 2coc_A           66 EERLDSGHVWKLQ-WAKQSWYLSASSAELQQQWLETLSTAA  105 (112)
T ss_dssp             SSCCSSSEEEEEE-ETTEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCEEEEe-cCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence            2222 56778777 33434 999999999999999998753

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.98  E-value=0.4  Score=52.13  Aligned_cols=113  Identities=13%  Similarity=0.071  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hcCCCCCCCCCcchhhhHHHHHHHHHHHHH--------hCCCCHH--
Q 010976          138 LTFAAKRYANAIERNPEDYDALYNWALVLQE--SADNVSLDSTSPSKDALLEEACKKYDEATR--------LCPTLHD--  205 (496)
Q Consensus       138 ~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~--------l~P~~~~--  205 (496)
                      ++.|+..+++....+|.... ++..+.+...  .++             .--+|+....++++        +.+.+..  
T Consensus       265 ~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~-------------~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~  330 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIET-------------KELDMITILNETLDPLLSLLNDLPPRDADSA  330 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGG-------------GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred             HHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhh-------------hhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence            68899999999999997643 3333333221  111             13457777777664        2333332  


Q ss_pred             --------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHH
Q 010976          206 --------AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRT  277 (496)
Q Consensus       206 --------a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~  277 (496)
                              .+..-+..+..    .|+++-|+       .+.++|+.+-|.....|+.|+.+|..+|++          +.
T Consensus       331 ~~~~~~~~LL~~Qa~FLl~----K~~~elAL-------~~Ak~AV~~aPseF~tW~~La~vYi~l~d~----------e~  389 (754)
T 4gns_B          331 RLMNCMSDLLNIQTNFLLN----RGDYELAL-------GVSNTSTELALDSFESWYNLARCHIKKEEY----------EK  389 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCSSCHHHHHHHHHHHHHTTCH----------HH
T ss_pred             cccCcchHHHHHHHHHHhc----cCcHHHHH-------HHHHHHHhcCchhhHHHHHHHHHHHHhccH----------HH
Confidence                    22223344445    78888888       899999999999999999999999999999          88


Q ss_pred             HHHHHHHH
Q 010976          278 AISKFRAA  285 (496)
Q Consensus       278 Ai~~~~~A  285 (496)
                      |+-.+..+
T Consensus       390 ALLtLNSc  397 (754)
T 4gns_B          390 ALFAINSM  397 (754)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHhcC
Confidence            87665543

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A

Probab=93.97  E-value=0.074  Score=50.38  Aligned_cols=90  Identities=17%  Similarity=0.216  Sum_probs=55.9

Q ss_pred             hhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCce-e
Q 010976          381 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-F  459 (496)
Q Consensus       381 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  459 (496)
                      ...|.++||+|....|..+-......          ..........|+|... .+..+.+-+ -..++|.|.|..+.+ +
T Consensus        36 ~K~WkrRWfVL~~~~L~yyK~~~~~~----------~~~~~~p~g~I~L~~~-~v~~~~~~~-kk~~~F~I~t~~~r~y~  103 (263)
T 3a8p_A           36 RRKWKQYWVTLKGCTLLFYETYGKNS----------TEQNSAPRCALFAEDS-IVQSVPEHP-KKEHVFCLSNSCGDVYL  103 (263)
T ss_dssp             TCCCEEEEEEEETTEEEEESSCCC----------------CCCSEEEECTTC-EEEECTTCS-SCSSEEEEECTTSCEEE
T ss_pred             CCCceEEEEEEcCCEEEEEecCcccc----------cccccCccceEEcCCc-EEEECCcCC-CCCCEEEEEcCCCcEEE
Confidence            45899999999877666544321100          0000122345676532 222222221 256889998766665 7


Q ss_pred             eeecChhhhhhHHHHHHHHHHHH
Q 010976          460 LVADSWEALDGWLDAIRLVYTIY  482 (496)
Q Consensus       460 ~~~~~~~~~~~~~~a~~~~~~~~  482 (496)
                      |.|+|.++++.|++||.-+....
T Consensus       104 f~A~s~ee~~~Wi~aI~~a~~~~  126 (263)
T 3a8p_A          104 FQATSQTDLENWVTAIHSACASL  126 (263)
T ss_dssp             EECSSHHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCHHHHHHHHHHHHHHHHhc
Confidence            89999999999999999876544

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A

Probab=93.82  E-value=0.077  Score=43.70  Aligned_cols=92  Identities=16%  Similarity=0.254  Sum_probs=59.3

Q ss_pred             hhhccccCCCCCCCCCChh-hhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCC
Q 010976          364 LKAGYLTAPPAGIPVAPHS-DWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT  442 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (496)
                      .+.|+|....    .+-.. .|+++||+|....|..+-..+.                ......|||..+. |..+.+-.
T Consensus        13 irkGWL~k~~----~g~~k~~wk~rWFVLt~~~L~yyKd~~e----------------ke~~G~IpL~~~~-vr~v~~~~   71 (125)
T 1dyn_A           13 IRKGWLTINN----IGIMKGGSKEYWFVLTAENLSWYKDDEE----------------KEKKYMLSVDNLK-LRDVEKGF   71 (125)
T ss_dssp             EEEEEEEESC----CCGGGTSSEEEEEEEESSEEEEESSTTC----------------SCEEEEEECTTEE-EEECCSCS
T ss_pred             EEEEEEEEec----CccccCCceeeEEEEeccceeeecCCcc----------------cccceEEECCCce-EeccCCCC
Confidence            5678887532    22233 5999999999888877654443                2345567775433 33333323


Q ss_pred             CCCCCeeeEeecCC--------ceeeeecChhhhhhHHHHHH
Q 010976          443 LPPGAGLCIETIHG--------PVFLVADSWEALDGWLDAIR  476 (496)
Q Consensus       443 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~a~~  476 (496)
                      ...-+.|.+-..+|        ...|-|+|.+++++|..||+
T Consensus        72 ~~rk~~F~l~~~d~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~  113 (125)
T 1dyn_A           72 MSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFL  113 (125)
T ss_dssp             SSSCEEEEEEETTSSCSSTTCSSEEEEESSHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCccccccceEEEEeCCCHHHHHHHHHHHH
Confidence            34556666653333        24889999999999999994

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=93.80  E-value=2.2  Score=42.74  Aligned_cols=92  Identities=23%  Similarity=0.292  Sum_probs=54.9

Q ss_pred             hhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCC
Q 010976          365 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP  444 (496)
Q Consensus       365 ~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (496)
                      +.|||.....  .+.....|.++||+|....|..+......                 ....++|.. .+|.++.+  ..
T Consensus       303 k~G~L~k~~~--~g~~~~~W~rrwfvl~~~~l~y~~~~~~~-----------------~~~~~~l~~-~~v~~~~~--~~  360 (407)
T 4h8s_A          303 KAGYLNLRNK--TGLVTTTWERLYFFTQGGNLMCQPRGAVA-----------------GGLIQDLDN-CSVMAVDC--ED  360 (407)
T ss_dssp             CEEEEEEEEE--CSSSCEEEEEEEEEECSSCEECCCTTCSS-----------------CCCCBCSSC-CEEEEECC--TT
T ss_pred             eeceeeeecc--CCCCCCCceEEEEEEECCEEEEEeCCCCC-----------------CCeEEECCc-eEEEECCC--CC
Confidence            4677754311  11234579999999987766654321111                 111223321 12333221  23


Q ss_pred             CCCeeeEeecCCc--eeeeecChhhhhhHHHHHHHH
Q 010976          445 PGAGLCIETIHGP--VFLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       445 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~  478 (496)
                      +.++|.|-|..+.  .+|-|+|.++++.|+.||.-+
T Consensus       361 r~~cF~i~~~~~~~~~~l~A~s~~e~~~Wi~ai~~a  396 (407)
T 4h8s_A          361 RRYCFQITTPNGKSGIILQAESRKENEEWICAINNI  396 (407)
T ss_dssp             CSSEEEEECTTSSCCEEEECSSSHHHHHHHHHHHHH
T ss_pred             CCceEEEEecCCCceEEEEcCCHHHHHHHHHHHHHH
Confidence            5678888876653  488999999999999999865

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}

Probab=93.45  E-value=0.12  Score=42.82  Aligned_cols=89  Identities=19%  Similarity=0.223  Sum_probs=53.3

Q ss_pred             hhhhhhhccccchhhhhhhccccccccccccCCCCCCCCC---CCceeeeecCceeeccccc-CCCCCCCCeeeEeecCC
Q 010976          381 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSP---DRRAIRIEVPDIVSVSACA-DLTLPPGAGLCIETIHG  456 (496)
Q Consensus       381 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  456 (496)
                      ...|.++||+|....|.-+.......       ..|.-.+   ......|+|.. ..++... |.+ ..-++|.|.|.+|
T Consensus        28 ~r~W~~~w~VL~~~~L~~yKd~~~~~-------~~~~~~~~~~~~~~~~i~L~~-a~v~~~~~d~~-krk~vF~l~t~~~   98 (124)
T 3pp2_A           28 KKHWSASWTVLEGGVLTFFKDSKTSA-------AGGLRQPSKFSTPEYTVELRG-ATLSWAPKDKS-SRKNVLELRSRDG   98 (124)
T ss_dssp             SCCCEEEEEEEETTEEEEESCSBCC----------CBCCGGGGCSEEEEEECTT-CEEEECCGGGC-SSSSEEEEECTTS
T ss_pred             CCCceEEEEEEECCEEEEEecCcccc-------ccCccCcccccCCcceEEcCC-CEEEecccccC-CCceEEEEECCCC
Confidence            34899999999876665543222110       0000000   12344566654 2233332 322 3568999998888


Q ss_pred             ce-eeeecChhhhhhHHHHHHHH
Q 010976          457 PV-FLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       457 ~~-~~~~~~~~~~~~~~~a~~~~  478 (496)
                      .. +|-|+|.+++..|+.+|.-+
T Consensus        99 ~~ylfqA~s~~e~~~Wi~aI~~a  121 (124)
T 3pp2_A           99 SEYLIQHDSEAIISTWHKAIAQG  121 (124)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHHH
Confidence            77 45589999999999999864

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.09  E-value=1.2  Score=48.32  Aligned_cols=111  Identities=14%  Similarity=0.094  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh-cCCCCH----------HHHHH
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ-LNWNSP----------QALNN  254 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~-l~P~~~----------~a~~~  254 (496)
                      ++.|+..+++..+.+|.....+....+....  ....+--+|+....++++.+...+. +.+.+.          ..+..
T Consensus       265 ~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~--~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~  342 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIHDIYYKTAMITILD--HIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNI  342 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHH
Confidence            6889999999999999765433322222111  0022345677666666665544443 233332          23334


Q ss_pred             HHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          255 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       255 lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                      -+..+...|++          +-|+.+-++|+.+.|.....|+.|+.+|..+|+
T Consensus       343 Qa~FLl~K~~~----------elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d  386 (754)
T 4gns_B          343 QTNFLLNRGDY----------ELALGVSNTSTELALDSFESWYNLARCHIKKEE  386 (754)
T ss_dssp             HHHHHHHTTCH----------HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhccCcH----------HHHHHHHHHHHhcCchhhHHHHHHHHHHHHhcc
Confidence            45555566666          999999999999999999999999999999999

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.02  E-value=2.8  Score=39.32  Aligned_cols=61  Identities=11%  Similarity=0.046  Sum_probs=55.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHH
Q 010976          221 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN  298 (496)
Q Consensus       221 ~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~  298 (496)
                      .|..++|+       +.....++.+|.|......|-.+|+-.|++          +.|...++.+.+++|+.......
T Consensus        10 ~g~L~~al-------~~~~~~VR~~P~da~~R~~LfqLLcv~G~w----------~RA~~QL~~~a~l~p~~~~~a~~   70 (273)
T 1zbp_A           10 EGQLQQAL-------ELLIEAIKASPKDASLRSSFIELLCIDGDF----------ERADEQLMQSIKLFPEYLPGASQ   70 (273)
T ss_dssp             TTCHHHHH-------HHHHHHHHTCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             CCCHHHHH-------HHHHHHHHhCCcCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhCchhhHHHHH
Confidence            78888888       899999999999999999999999999999          99999999999999998654433

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.71  E-value=1.6  Score=43.44  Aligned_cols=81  Identities=16%  Similarity=0.005  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHhCCC--------C--H------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Q 010976          186 LEEACKKYDEATRLCPT--------L--H------------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ  243 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~--------~--~------------~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~  243 (496)
                      .+.|...+++|+.+-..        .  .            .+...++.++..    .|++.+++       ..+.+++.
T Consensus       131 ~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~----~g~~~~a~-------~~l~~~~~  199 (388)
T 2ff4_A          131 FEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIA----CGRASAVI-------AELEALTF  199 (388)
T ss_dssp             HHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHH
Confidence            77888888888877321        1  0            122334444445    88888888       89999999


Q ss_pred             cCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHH
Q 010976          244 LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ  287 (496)
Q Consensus       244 l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~  287 (496)
                      .+|-+-.+|..+-.+|...|+.          .+|+..|++.-+
T Consensus       200 ~~P~~E~~~~~lm~al~~~Gr~----------~~Al~~y~~~r~  233 (388)
T 2ff4_A          200 EHPYREPLWTQLITAYYLSDRQ----------SDALGAYRRVKT  233 (388)
T ss_dssp             HSTTCHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHH
Confidence            9999999999999999999999          999999888644

>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1

Probab=92.49  E-value=0.2  Score=42.78  Aligned_cols=35  Identities=29%  Similarity=0.256  Sum_probs=28.8

Q ss_pred             CCCeeeEeecCC---ceeeeecChhhhhhHHHHHHHHH
Q 010976          445 PGAGLCIETIHG---PVFLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       445 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      .-++|+|.+...   +.+|-|+|-+++.+|+.||+=+.
T Consensus       110 ~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa  147 (150)
T 2fjl_A          110 RLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVA  147 (150)
T ss_dssp             CSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence            457899986544   56899999999999999998663

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=92.12  E-value=0.071  Score=53.50  Aligned_cols=95  Identities=15%  Similarity=0.298  Sum_probs=57.7

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhcccc--chhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCC
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVL--NHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL  441 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (496)
                      ++.|+|.....     ....|.++||+|  ...-|..+...+.                ..+...|+|.++..+......
T Consensus       147 ~keG~L~KrG~-----~~k~WkrRwFVL~~~~~~L~Yy~~~~~----------------~~p~g~I~L~~~~~~~~~~~~  205 (386)
T 3lju_X          147 YREGFLWKRGR-----DNGQFLSRKFVLTEREGALKYFNRNDA----------------KEPKAVMKIEHLNATFQPAKI  205 (386)
T ss_dssp             EEEEEEEEECS-----SSCCEEEEEEEEETTTTEEEEEC---------------------CCSEEEEGGGEEEEECHHHH
T ss_pred             ccccceeeecc-----ccCCceEEEEEEEcCCCEEEEECCCCc----------------cCcccEEEeeccEEEEccccc
Confidence            45788876532     245799999999  4455555432211                234667888887655532233


Q ss_pred             CCCCCCeeeEee-cCCc-eeeeecChhhhhhHHHHHHHHH
Q 010976          442 TLPPGAGLCIET-IHGP-VFLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       442 ~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      .-|-|+.+.... .... .||.|+|.++++.|++||+.+.
T Consensus       206 ~~~~~f~I~~~~~~~~R~y~l~A~s~~e~~~Wi~aIr~a~  245 (386)
T 3lju_X          206 GHPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAAR  245 (386)
T ss_dssp             TSTTCEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEecCCCceEEEEEcCCHHHHHHHHHhhhhcc
Confidence            444444443221 1112 3888999999999999999763

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=92.08  E-value=0.11  Score=51.27  Aligned_cols=92  Identities=16%  Similarity=0.195  Sum_probs=57.5

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCC
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  443 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (496)
                      ...|||.....     ....|.++||+|....|..+.....                ......|+|..+. |..+.+.  
T Consensus       214 ~k~G~L~K~g~-----~~k~WkkRwFVL~~~~L~Yyk~~~~----------------~~p~G~I~L~~~~-v~~~~~~--  269 (347)
T 2r09_A          214 DREGWLLKLGG-----RVKTWKRRWFILTDNCLYYFEYTTD----------------KEPRGIIPLENLS-IREVEDP--  269 (347)
T ss_dssp             CEEEEEEEECS-----SSCCEEEEEEEEETTEEEEESSTTC----------------SSCSEEEECTTCE-EEEECCS--
T ss_pred             ccCCeeEecCC-----CcccceeEEEEEcCCEEEEEcCCCc----------------cCCcEEEEcCCeE-EEEccCC--
Confidence            45788865422     2457999999998766665432221                1123456776553 4433322  


Q ss_pred             CCCCeeeEeecC---------------------Cc-eeeeecChhhhhhHHHHHHHHH
Q 010976          444 PPGAGLCIETIH---------------------GP-VFLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       444 ~~~~~~~~~~~~---------------------~~-~~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      ...++|.|.+..                     +. .||.|+|.++++.|++||+.+.
T Consensus       270 ~~~~~F~I~~~~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai  327 (347)
T 2r09_A          270 RKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASI  327 (347)
T ss_dssp             SCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHH
Confidence            234556665432                     12 3789999999999999999764

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=91.13  E-value=0.18  Score=50.53  Aligned_cols=95  Identities=21%  Similarity=0.288  Sum_probs=56.9

Q ss_pred             hhhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCC
Q 010976          363 YLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT  442 (496)
Q Consensus       363 ~l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (496)
                      ..+.|||.......  .....|.++||+|....|..... ..             .   .....|+|... +|.++.+  
T Consensus       278 ~~k~G~L~K~~~~~--~~~~~WkkRwfvL~~~~L~y~k~-~~-------------~---~~~~~i~l~~~-~v~~~~~--  335 (385)
T 2q13_A          278 TRKAGYLNARNKTG--LVSSTWDRQFYFTQGGNLMSQAR-GD-------------V---AGGLAMDIDNC-SVMAVDC--  335 (385)
T ss_dssp             SCCEEEEEEC----------CCEEEEEEEETTEEEEECS-SC-------------S---SCEEEEECTTC-EEEEECC--
T ss_pred             ccEEEEEEEecCCC--CCcCCceeEEEEEECCEEEEecC-CC-------------c---CCCceEEccce-EEEeccc--
Confidence            35678877652211  02236999999998766643222 10             0   11234555432 2333322  


Q ss_pred             CCCCCeeeEeecCC--ceeeeecChhhhhhHHHHHHHHH
Q 010976          443 LPPGAGLCIETIHG--PVFLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       443 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      ..+.++|.|.|..|  ..+|.|+|.++++.|+.||+-+.
T Consensus       336 ~~r~~~F~i~t~~~~~~~~l~A~s~~e~~~Wi~ai~~~~  374 (385)
T 2q13_A          336 EDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNIS  374 (385)
T ss_dssp             TTCSSEEEEECTTSCBCCCEECSSHHHHHHHHHHHHHHH
T ss_pred             cCCCceEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHHHH
Confidence            34668899988775  34899999999999999998763

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=90.79  E-value=0.39  Score=36.68  Aligned_cols=45  Identities=27%  Similarity=0.199  Sum_probs=37.4

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010976          185 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS  248 (496)
Q Consensus       185 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~  248 (496)
                      ..++|+.+..+|++.|               .    .|++.+|+.+|.+|++.|..++...|+.
T Consensus        15 ~~~~Ai~lv~~Ave~D---------------~----~g~y~eAl~lY~~aie~l~~alk~e~d~   59 (83)
T 2w2u_A           15 LEEMARKYAINAVKAD---------------K----EGNAEEAITNYKKAIEVLAQLVSLYRDG   59 (83)
T ss_dssp             HHHHHHHHHHHHHHHH---------------H----TTCHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHHHHH---------------H----hccHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence            4677888888886653               3    9999999999999999999999887653

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=90.78  E-value=0.22  Score=40.76  Aligned_cols=94  Identities=14%  Similarity=0.314  Sum_probs=58.2

Q ss_pred             hccccCCCCCCCCCChh-hhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccC---C
Q 010976          366 AGYLTAPPAGIPVAPHS-DWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACAD---L  441 (496)
Q Consensus       366 ~g~l~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  441 (496)
                      .|++..+..   ..... .|.+++|+|....|..+........             ......|++..+.+|+++..   .
T Consensus         4 eGwl~~pk~---~~~~k~~Wkkr~~vL~~~kL~~y~~~~~~~~-------------~~p~~~Idl~~~~~V~~V~~~d~i   67 (117)
T 2rov_A            4 EGWLSLPVR---NNTKKFGWVKKYVIVSSKKILFYDSEQDKEQ-------------SNPYMVLDIDKLFHVRPVTQTDVY   67 (117)
T ss_dssp             EEEEECCCC---SSSSCCCCCEEEEEEETTEEEEESCHHHHHT-------------TCCSEEECGGGEEEEEECCTTTCS
T ss_pred             EEEEEeecC---CCccCCCcEEEEEEEECCEEEEEECCCCccc-------------CCceEEEECcccEEEEEccccccc
Confidence            477765322   12233 7999999998777776544222110             12244677777777665533   1


Q ss_pred             -----CCCCCCeeeEeecC------CceeeeecChhhhhhHHHHHHH
Q 010976          442 -----TLPPGAGLCIETIH------GPVFLVADSWEALDGWLDAIRL  477 (496)
Q Consensus       442 -----~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~  477 (496)
                           .+|  ..|.|-+..      ...||.|+|.++...|+.||+-
T Consensus        68 ~~~~~~~p--~iF~I~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~  112 (117)
T 2rov_A           68 RADAKEIP--RIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVK  112 (117)
T ss_dssp             SSCTTTGG--GEEEEEECSSSSTTCEEEEEECSSHHHHHHHHHHHHH
T ss_pred             ccccccCC--cEEEEEeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHH
Confidence                 123  456665432      3469999999999999999973

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}

Probab=90.76  E-value=0.46  Score=39.41  Aligned_cols=89  Identities=13%  Similarity=0.069  Sum_probs=55.1

Q ss_pred             hhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeec-CCce-
Q 010976          381 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETI-HGPV-  458 (496)
Q Consensus       381 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-  458 (496)
                      ...|.|+||+|-...|..+....-+.       .........+.-.|||.. ..|+.+.+.+  .-++|.|.+. .|-+ 
T Consensus        21 ~ksWkr~W~vL~g~~L~yf~~~~~~~-------~~~~~~~~~P~~~i~L~g-~~V~~~e~~~--~~~~F~L~~~~~G~~Y   90 (126)
T 2dtc_A           21 LSSWTRYWVVLSGATLLYYGAKSLRG-------TDRKHYKSTPGKKVSIVG-WMVQLPDDPE--HPDIFQLNNPDKGNVY   90 (126)
T ss_dssp             SCCCEEEEEEEETTEEEEEEBSSSCC-------SSGGGBCSSCSEEEECTT-CEEECCCCTT--STTEEEEECTTSCSEE
T ss_pred             ccCcccEEEEEeCCEEEEEccccccc-------ccccccccCCCceEEeCC-CEEEecCCCC--CCCEEEEeeCCCCCEE
Confidence            45899999999877777655321110       000011123344677753 3444444433  5677887766 5666 


Q ss_pred             eeeecChhhhhhHHHHHHHHH
Q 010976          459 FLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       459 ~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      .|-|+|.++++.|+.||+-+-
T Consensus        91 ~fqA~s~~~~~~W~~ai~~a~  111 (126)
T 2dtc_A           91 KFQTGSRFHAILWHKHLDDAC  111 (126)
T ss_dssp             EEECSSHHHHHHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHH
Confidence            566779999999999998754

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=90.63  E-value=2.2  Score=37.44  Aligned_cols=99  Identities=12%  Similarity=-0.018  Sum_probs=66.3

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976          134 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA  213 (496)
Q Consensus       134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  213 (496)
                      ..|+++.|.+..++.     ++...|..||......|+              ++-|+.+|+++=     +..   .+..+
T Consensus        17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn--------------~~lAe~cy~~~~-----D~~---~L~~L   69 (177)
T 3mkq_B           17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGN--------------ASLAEMIYQTQH-----SFD---KLSFL   69 (177)
T ss_dssp             HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHTT-----CHH---HHHHH
T ss_pred             hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHhC-----CHH---HHHHH
Confidence            368999999887765     678999999999999999              999999999873     322   33344


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH
Q 010976          214 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA  285 (496)
Q Consensus       214 ~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A  285 (496)
                      |..    .|+.+.-.       ..-+.+.... +    ++....+++.+|++          +++++.|.+.
T Consensus        70 y~~----tg~~e~L~-------kla~iA~~~g-~----~n~af~~~l~lGdv----------~~~i~lL~~~  115 (177)
T 3mkq_B           70 YLV----TGDVNKLS-------KMQNIAQTRE-D----FGSMLLNTFYNNST----------KERSSIFAEG  115 (177)
T ss_dssp             HHH----HTCHHHHH-------HHHHHHHHTT-C----HHHHHHHHHHHTCH----------HHHHHHHHHT
T ss_pred             HHH----hCCHHHHH-------HHHHHHHHCc-c----HHHHHHHHHHcCCH----------HHHHHHHHHC
Confidence            455    67665544       2222222221 1    12233556778888          8888777554

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=90.50  E-value=0.42  Score=36.48  Aligned_cols=45  Identities=20%  Similarity=0.119  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP  249 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~  249 (496)
                      .+.|+.+..+|++.|               .    .|++.+|+.+|.+|++.|..++...|+..
T Consensus         8 ~~~Ai~lv~~Ave~D---------------~----~g~y~eAl~lY~~aie~l~~~lk~e~d~~   52 (83)
T 2v6y_A            8 EDMARKYAILAVKAD---------------K----EGKVEDAITYYKKAIEVLSQIIVLYPESV   52 (83)
T ss_dssp             HHHHHHHHHHHHHHH---------------H----TTCHHHHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHHHH---------------H----hccHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence            667888888886653               3    99999999999999999999998876543

>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=90.45  E-value=0.45  Score=39.34  Aligned_cols=88  Identities=15%  Similarity=0.256  Sum_probs=62.3

Q ss_pred             ChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCC-CCCeeeEeecCCce
Q 010976          380 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP-PGAGLCIETIHGPV  458 (496)
Q Consensus       380 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  458 (496)
                      ....|++++|+|-+.+-...-..|=..     .     .-.+.+++.|+...|..|..|..+-+| .-..|.+.+..+-.
T Consensus        38 ~~~~W~k~RLvL~k~g~G~~y~LEfy~-----P-----PkssKpK~~i~cs~I~EVR~tt~LEmPD~~nTFVlK~~n~~e  107 (136)
T 1v5m_A           38 GTAQWQKCRLLLRRAVAGERFRLEFFV-----P-----PKASRPKVSIPLSAIIEVRTTMPLEMPEKDNTFVLKVENGAE  107 (136)
T ss_dssp             CSCCCEEEEEEEEECSSSCCEEEEEES-----S-----TTSSSCSSCEETTTCCBCCCCCCSSSCCCTTEECCBCTTSCB
T ss_pred             cccchhheeeEEEEccCCCceEEEEec-----C-----CcccCCccccchhhhhhhhhccccccCCccceEEEEecCCcE
Confidence            456899999998654211100001000     0     011346889999999999999999999 77788888777744


Q ss_pred             -eeeecChhhhhhHHHHHHH
Q 010976          459 -FLVADSWEALDGWLDAIRL  477 (496)
Q Consensus       459 -~~~~~~~~~~~~~~~a~~~  477 (496)
                       +|-++|..++..|+..|+-
T Consensus       108 yi~ea~d~~q~~sWla~Ir~  127 (136)
T 1v5m_A          108 YILETIDSLQKHSWVADIQG  127 (136)
T ss_dssp             EEEECSSHHHHHHHHHHHHH
T ss_pred             EEEEcCCHHHHHHHHHHHHh
Confidence             7778899999999999964

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=89.92  E-value=5  Score=40.02  Aligned_cols=96  Identities=15%  Similarity=0.021  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH
Q 010976          208 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA  285 (496)
Q Consensus       208 ~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A  285 (496)
                      ..||..|.+    .|+|.+|++.+.+....+.+   ++..  -.+.+..-..+|..++++          ..+...|.+|
T Consensus       103 ~kL~~l~~~----~~~y~~a~~~i~~l~~~~~~---~dd~~~llev~lle~~~~~~~~n~----------~k~k~~l~~a  165 (394)
T 3txn_A          103 ARLIALYFD----TALYTEALALGAQLLRELKK---LDDKNLLVEVQLLESKTYHALSNL----------PKARAALTSA  165 (394)
T ss_dssp             HHHHHHHHH----TTCHHHHHHHHHHHHHHHTT---SSCTHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHH
T ss_pred             HHHHHHHHH----hhhHHHHHHHHHHHHHHHhc---cccchhHHHHHHHHHHHHHHhccH----------HHHHHHHHHH
Confidence            478999999    99999999776665555543   2221  245666777888888888          9999999998


Q ss_pred             HHhc---CCCH----HHHHHHHHHHH-HcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHH
Q 010976          286 IQLQ---FDFH----RAIYNLGTVLY-GLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAH  339 (496)
Q Consensus       286 l~l~---P~~~----~a~~~lg~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~  339 (496)
                      ....   +.++    .....-|..+. ..++                   |..|..+|-.+.
T Consensus       166 ~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rd-------------------yk~A~~~F~eaf  208 (394)
T 3txn_A          166 RTTANAIYCPPKVQGALDLQSGILHAADERD-------------------FKTAFSYFYEAF  208 (394)
T ss_dssp             HHHHHHSCCCHHHHHHHHHHHHHHHHHTTSC-------------------HHHHHHHHHHHH
T ss_pred             HhhhccCCCCHHHHHHHHHHhhHHHHHhccC-------------------HHHHHHHHHHHH
Confidence            7653   1233    23344466666 6666                   777777776665

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=89.56  E-value=1.4  Score=34.22  Aligned_cols=50  Identities=14%  Similarity=0.087  Sum_probs=41.3

Q ss_pred             chhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 010976          181 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP  249 (496)
Q Consensus       181 ~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~  249 (496)
                      .+....+.|+....+|++.+               .    .|++++|+.+|.+|++.|..++...|+..
T Consensus         7 ~~~~~l~~Ai~lv~~Ave~D---------------~----~g~y~eAl~~Y~~Aie~l~~alk~e~~~~   56 (93)
T 1wfd_A            7 GQDSDSTAAVAVLKRAVELD---------------A----ESRYQQALVCYQEGIDMLLQVLKGTKESS   56 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHHHH---------------H----TTCHHHHHHHHHHHHHHHHHHHHTCCCHH
T ss_pred             cchHHHHHHHHHHHHHHHHH---------------H----hCCHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence            34455788998888887653               3    89999999999999999999999887644

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=89.51  E-value=0.32  Score=46.30  Aligned_cols=87  Identities=17%  Similarity=0.323  Sum_probs=51.9

Q ss_pred             hhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCc--eeecccc-cCCCCCCCCeeeEeec---
Q 010976          381 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPD--IVSVSAC-ADLTLPPGAGLCIETI---  454 (496)
Q Consensus       381 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~---  454 (496)
                      ...|.++||+|-..++.......+..             +..-...+++++  |-.+... --..-|-.++|+|...   
T Consensus       171 ~k~WkkRyfvLr~sgLyy~~K~~sk~-------------~r~l~~l~~L~~~~VY~~~~~kkk~kaPt~~~F~ik~~~~~  237 (281)
T 4gmv_A          171 KKSWKKRYFLLRASGIYYVPKGKAKV-------------SRDLVCFLQLDHVNVYYGQDYRNKYKAPTDYCLVLKHPQIQ  237 (281)
T ss_dssp             SSCEEEEEEEECSSCEEEC----------------------CCEEEECGGGCEEEEESSHHHHTCCSCSCEEEEECTTCC
T ss_pred             CCCCeEEEEEEeCCEEEEEeCCCCCc-------------cccceEEEEcCCcEEEEecccccccCCCCCcEEEEecCccC
Confidence            35899999999888887644322211             111122334554  2222211 1134477788888731   


Q ss_pred             ---CCceeeeecChhhhhhHHHHHHHHHH
Q 010976          455 ---HGPVFLVADSWEALDGWLDAIRLVYT  480 (496)
Q Consensus       455 ---~~~~~~~~~~~~~~~~~~~a~~~~~~  480 (496)
                         ....||-|+|.++++.|..||+++-+
T Consensus       238 ~~~~~~~~~caede~~~~~Wv~Air~ak~  266 (281)
T 4gmv_A          238 KKSQYIKYLCCDDVRTLHQWVNGIRIAKY  266 (281)
T ss_dssp             SCCTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCceEEEEeCCHHHHHHHHHHHHHHhh
Confidence               22359999999999999999999743

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=89.08  E-value=11  Score=32.87  Aligned_cols=119  Identities=13%  Similarity=0.024  Sum_probs=82.2

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  214 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~  214 (496)
                      -.+|+.++-.-.-.+   |..++-...++.+++-.|.              |..++-++.     +-+...+.+.-..||
T Consensus        15 Y~dYdt~~fLsa~L~---~~~~eY~lL~~I~LyyngE--------------Y~R~Lf~L~-----~lNT~Ts~YYk~LCy   72 (242)
T 3kae_A           15 YRDYETAIFLAACLL---PCKPEYRMLMSIVLYLNGE--------------YTRALFHLH-----KLNTCTSKYYESLCY   72 (242)
T ss_dssp             TTCHHHHHHHHHHHC-------CTHHHHHHHHHHTTC--------------HHHHHHHHH-----TCCBHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHc---cCChHHHhhhhhhhhhcch--------------HhHHHHHHH-----hcchHHHHHHHHHHH
Confidence            356666654433333   3333445667888888888              877766543     335667777788888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHh-----------------cCCCCHH-HHHHHHHHHHHccCcchHHHhhhhHH
Q 010976          215 SDRAKMRGRTKEAEELWKQATKNYEKAVQ-----------------LNWNSPQ-ALNNWGLALQELSAIVPAREKQTIVR  276 (496)
Q Consensus       215 ~~~~~~~g~~~eA~~~~~~A~~~~~~Al~-----------------l~P~~~~-a~~~lg~~l~~~g~~~~A~~~~~~~~  276 (496)
                      ..    +.++..|+       .+++..++                 .||.+-+ .++.+|.++.+.|..          +
T Consensus        73 ~k----lKdYkkA~-------~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r----------~  131 (242)
T 3kae_A           73 KK----KKDYKKAI-------KSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYR----------E  131 (242)
T ss_dssp             HH----TTCHHHHH-------HHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCH----------H
T ss_pred             HH----HHHHHHHH-------HHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCH----------H
Confidence            88    89999888       66666661                 2455555 456789999999999          9


Q ss_pred             HHHHHHHHHHHhcCCCHHHH
Q 010976          277 TAISKFRAAIQLQFDFHRAI  296 (496)
Q Consensus       277 ~Ai~~~~~Al~l~P~~~~a~  296 (496)
                      +||.+|.....++|-++.+-
T Consensus       132 EaI~y~~~Sf~~~~lf~~vE  151 (242)
T 3kae_A          132 EGIGHYVRSFGKSFLFSPVE  151 (242)
T ss_dssp             HHHHHHHHHHHHCCCHHHHH
T ss_pred             HhhhHhhhhcCCccccchHH
Confidence            99999999999998766543

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=88.94  E-value=1.8  Score=33.30  Aligned_cols=44  Identities=25%  Similarity=0.184  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 010976          205 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALN  253 (496)
Q Consensus       205 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~  253 (496)
                      ..+-.++..+..    .|+|++||++.++|..++..|+.+- .+..++.
T Consensus        16 H~~~RrAe~ll~----~gkydeAIech~kAa~yL~eAmklt-qs~qa~~   59 (97)
T 2crb_A           16 HQQSRRADRLLA----AGKYEEAISCHRKATTYLSEAMKLT-ESEQAHL   59 (97)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHTTC-CCHHHHH
T ss_pred             hHhhhHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHHhh-ccHHHHH
Confidence            345566677777    9999999999999999999999997 5666554

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=88.22  E-value=1.2  Score=36.35  Aligned_cols=47  Identities=19%  Similarity=0.262  Sum_probs=39.4

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 010976          185 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ  250 (496)
Q Consensus       185 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~  250 (496)
                      .++.|+.+..+|+..               -.    .|+|++|+.+|.+|+++|..++...+.+..
T Consensus        14 ~l~kAi~lv~~Ave~---------------D~----ag~y~eAl~lY~~Aie~l~~alk~e~~~~~   60 (117)
T 2cpt_A           14 NLQKAIDLASKAAQE---------------DK----AGNYEEALQLYQHAVQYFLHVVKYEAQGDK   60 (117)
T ss_dssp             HHHHHHHHHHHHHHH---------------HH----HTCHHHHHHHHHHHHHHHHHHHHTSCCCHH
T ss_pred             HHHHHHHHHHHHHHH---------------HH----ccCHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence            578888888888744               23    899999999999999999999998866655

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}

Probab=85.86  E-value=0.79  Score=43.49  Aligned_cols=91  Identities=14%  Similarity=0.215  Sum_probs=53.2

Q ss_pred             ChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCce-
Q 010976          380 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-  458 (496)
Q Consensus       380 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  458 (496)
                      ....|.++|++|....|.-+..........          .......|+|+.-.. +.+.|-+ -.-++|+|.|.+|.+ 
T Consensus        35 ~~r~Wkk~w~VLkg~~L~fYKde~~~~~~~----------~~~p~~~I~L~ga~v-~~a~d~~-kKk~vF~L~t~~g~~y  102 (279)
T 3a8n_A           35 TRRKWKHYWVSLKGCTLFFYETDGRSGIDH----------NSVPKHAVWVENSIV-QAVPEHP-KKDFVFCLSNSLGDAF  102 (279)
T ss_dssp             CCCCCEEEEEEEETTEECCBCCC------------------CCCSSCCBCCSCEE-CCCTTSS-SSCSCCCEEETTTEEE
T ss_pred             cCCCCeEEEEEEeCCEEEEEeccccccccc----------ccCCCceEeccCcEE-EeccccC-CCCcEEEEEcCCCCEE
Confidence            346899999999766665543322211000          001122344443222 2222211 134789998888877 


Q ss_pred             eeeecChhhhhhHHHHHHHHHHHH
Q 010976          459 FLVADSWEALDGWLDAIRLVYTIY  482 (496)
Q Consensus       459 ~~~~~~~~~~~~~~~a~~~~~~~~  482 (496)
                      +|-|+|.+++..|+.||..+...+
T Consensus       103 LFQA~s~eEm~~WI~aI~~a~~~~  126 (279)
T 3a8n_A          103 LFQTTSQTELENWITAIHSACAAA  126 (279)
T ss_dssp             ECCCSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhhh
Confidence            556889999999999999887643

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.45  E-value=0.66  Score=38.82  Aligned_cols=85  Identities=12%  Similarity=0.274  Sum_probs=49.2

Q ss_pred             hhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCC-CCCeeeEeecC--C-
Q 010976          381 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP-PGAGLCIETIH--G-  456 (496)
Q Consensus       381 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~-  456 (496)
                      ...|.++||++....|-..-..+...              +.+.-.|+|.... |.|  |+++. -.++|.+-+..  | 
T Consensus        25 lK~~KrrWFvlk~~~L~YyK~kee~~--------------~ePig~I~L~gce-V~p--d~~~~~~kf~ikl~iPs~~g~   87 (137)
T 2ys3_A           25 LKGYRQHWVVFKETTLSYYKSQDEAP--------------GDPIQQLNLKGCE-VVP--DVNVSGQKFCIKLLVPSPEGM   87 (137)
T ss_dssp             SSSSCCCEEEECSSCEEEESSTTTTT--------------SCCSCCBCTTTCE-EEE--CCBGGGTBEEEEEEEECSSSE
T ss_pred             cccceeEEEEEeCCEEEEECCchhcc--------------CCCceEEECCCCE-Eec--cccccCCceEEEEEccCCCCc
Confidence            34789999999877766652222210              1122233333211 222  22222 45555555321  1 


Q ss_pred             -ceeeeecChhhhhhHHHHHHHHHHHHhhcc
Q 010976          457 -PVFLVADSWEALDGWLDAIRLVYTIYARGK  486 (496)
Q Consensus       457 -~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  486 (496)
                       -+||.+||.+..+.|..|++++    .+||
T Consensus        88 r~y~l~cdsEeqy~~WMaA~rlA----skgk  114 (137)
T 2ys3_A           88 SEIYLRCQDEQQYARWMAGCRLA----SKGR  114 (137)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHH----HTSC
T ss_pred             eEEEEECCCHHHHHHHHHHHHHh----ccCc
Confidence             2699999999999999999965    4675

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}

Probab=85.12  E-value=0.83  Score=42.79  Aligned_cols=87  Identities=24%  Similarity=0.400  Sum_probs=54.4

Q ss_pred             hhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccC---CCCCCCCeeeEeecCC-
Q 010976          381 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACAD---LTLPPGAGLCIETIHG-  456 (496)
Q Consensus       381 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-  456 (496)
                      ...|.++||+|-..++..........             +..-...+++.+..-..+...   ..-|-.++|+|....- 
T Consensus       145 ~K~WkkRyfvLr~sgLy~~~k~~sk~-------------~r~l~~~~~L~~~~vy~~~~~kKk~kaPt~~~F~ik~~k~~  211 (256)
T 3hk0_A          145 KKSWKKLYVCLRRSGLYCSTKGTSAA-------------PRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLCIKPNKVR  211 (256)
T ss_dssp             SSCEEEEEEEEETTEEEEESSTTCCC-------------GGGEEEEECCTTEEEEEESSTHHHHCCSSSEEEEEEETTCS
T ss_pred             CCcceEEEEEEeCCEEEEEecCCCCc-------------cccceEEEEcCCCEEEEecccccccCCCCCCEEEEEccccc
Confidence            46899999999988886544332211             111122345554433333322   3556667777762211 


Q ss_pred             -----ceeeeecChhhhhhHHHHHHHHHH
Q 010976          457 -----PVFLVADSWEALDGWLDAIRLVYT  480 (496)
Q Consensus       457 -----~~~~~~~~~~~~~~~~~a~~~~~~  480 (496)
                           -.||-|+|.+++..|..||+++.+
T Consensus       212 ~~~~~~~~lcaede~~~~~W~~aIr~ak~  240 (256)
T 3hk0_A          212 NETKELRLLCAEDEQTRTSWMTAFRLLKY  240 (256)
T ss_dssp             SCCTTCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEeCCHHHHHHHHHHHHHHHh
Confidence                 259999999999999999999753

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=84.44  E-value=1.5  Score=33.40  Aligned_cols=45  Identities=16%  Similarity=0.135  Sum_probs=37.1

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010976          185 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS  248 (496)
Q Consensus       185 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~  248 (496)
                      .++.|+....+|+..               -.    .|++++|+.+|.+|++.|..++...++.
T Consensus         9 ~l~~A~~l~~~Av~~---------------D~----~g~y~eAl~~Y~~aie~l~~a~k~e~~~   53 (85)
T 2v6x_A            9 FLTKGIELVQKAIDL---------------DT----ATQYEEAYTAYYNGLDYLMLALKYEKNP   53 (85)
T ss_dssp             HHHHHHHHHHHHHHH---------------HH----TTCHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHHHHH---------------HH----cCCHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence            367888888888643               23    8999999999999999999999888653

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*

Probab=83.93  E-value=0.81  Score=39.45  Aligned_cols=85  Identities=15%  Similarity=0.271  Sum_probs=51.9

Q ss_pred             hhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCC-CeeeEeecCC---
Q 010976          381 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPG-AGLCIETIHG---  456 (496)
Q Consensus       381 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---  456 (496)
                      ...|+++||++....|..+-..+...              +.+...|+|..   -+..-|++|..+ +++++- ++.   
T Consensus        63 LKgyKryWFv~kd~~LsyYKskEe~~--------------geP~~~I~LrG---CEVtpDVnva~~Kf~IkL~-vP~~~g  124 (173)
T 4f7h_A           63 LKGYKQYWCTFKDTSISCYKSKEESS--------------GTPAHQMNLRG---CEVTPDVNISGQKFNIKLL-IPVAEG  124 (173)
T ss_dssp             CCCCEEEEEEEETTEEEEESCGGGCS--------------SCCSEEEECTT---CEEEEEEETTTTEEEEEEE-EEETTE
T ss_pred             cccceeEEEEEeCCEEEEEcCHhHhc--------------CCCceEEecCc---eEEeccccccccceeEEEe-ccCCCC
Confidence            45799999999777666654444421              12233344331   111123455533 455554 222   


Q ss_pred             --ceeeeecChhhhhhHHHHHHHHHHHHhhccc
Q 010976          457 --PVFLVADSWEALDGWLDAIRLVYTIYARGKA  487 (496)
Q Consensus       457 --~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  487 (496)
                        -+||.+++....+.|.-|.+|    +.|||+
T Consensus       125 m~e~~Lrcd~E~qya~WMAAcrL----AskGkt  153 (173)
T 4f7h_A          125 MNEIWLRCDNEKQYAHWMAACRL----ASKGKT  153 (173)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHHH----HHTTCC
T ss_pred             cceeeeecCCHHHHHHHHHHhhh----hccCCc
Confidence              279999999999999999987    568874

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.60  E-value=2.9  Score=42.28  Aligned_cols=104  Identities=13%  Similarity=0.016  Sum_probs=74.0

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 010976          153 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFYNWAIAISDRAKMRGRTKEAEE  229 (496)
Q Consensus       153 P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~~~~~~~~~g~~~eA~~  229 (496)
                      ..-..++..+|..|...|+              +++|.++|.++...+..   -.+.+...-.++..    .+++..+..
T Consensus       128 ~e~~~~~~~la~~~~~~Gd--------------~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~----~~d~~~~~~  189 (429)
T 4b4t_R          128 LEQAQAWINLGEYYAQIGD--------------KDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF----YNDQLYVKE  189 (429)
T ss_dssp             CCCSSCCHHHHHHHHHHCC--------------CTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----hccHHHHHH
Confidence            3345678999999999999              99999999999887543   34677777777777    999999996


Q ss_pred             HHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc
Q 010976          230 LWKQATKNYEKAVQLNWNSPQ----ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ  289 (496)
Q Consensus       230 ~~~~A~~~~~~Al~l~P~~~~----a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~  289 (496)
                      .+.+|......    . .++.    .....|.++...++|          .+|-..|..++.-.
T Consensus       190 ~~~ka~~~~~~----~-~d~~~~~~lk~~~gl~~l~~r~f----------~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          190 KLEAVNSMIEK----G-GDWERRNRYKTYYGIHCLAVRNF----------KEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHHHHHTT----C-CCTHHHHHHHHHHHHGGGGTSCH----------HHHHHHHHHHHHHS
T ss_pred             HHHHHHHhhhc----C-CCHHHHHHHHHHHHHHHHHhChH----------HHHHHHHHHHhccC
Confidence            55555433321    2 2222    233445566666666          99999998887653

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=81.39  E-value=9.6  Score=37.93  Aligned_cols=124  Identities=13%  Similarity=-0.020  Sum_probs=80.7

Q ss_pred             ccHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC------C
Q 010976          136 RILTFAAKRYANAIERNPEDYD------ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT------L  203 (496)
Q Consensus       136 g~~~~Ai~~~~~al~~~P~~~~------a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~------~  203 (496)
                      +..+.=++.+..+++..-+.-.      .-..+|.+|+..|+              |.+|.+.+.+.++-...      .
T Consensus        73 ~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~--------------y~~a~~~i~~l~~~~~~~dd~~~l  138 (394)
T 3txn_A           73 AGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTAL--------------YTEALALGAQLLRELKKLDDKNLL  138 (394)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHTTSSCTHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------------HHHHHHHHHHHHHHHhccccchhH
Confidence            3344455666666654322211      22378999999999              99999999998885322      2


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH-HccCcchHHHhhhhHHHHHHH
Q 010976          204 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-SPQALNNWGLALQ-ELSAIVPAREKQTIVRTAISK  281 (496)
Q Consensus       204 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~-~~g~~~~A~~~~~~~~~Ai~~  281 (496)
                      .+.+..-..+|..    ++++.++...|.+|...-. ++-.+|. .+.....-|..+. ..++|          .+|-..
T Consensus       139 lev~lle~~~~~~----~~n~~k~k~~l~~a~~~~~-ai~~~p~i~a~i~~~~Gi~~l~~~rdy----------k~A~~~  203 (394)
T 3txn_A          139 VEVQLLESKTYHA----LSNLPKARAALTSARTTAN-AIYCPPKVQGALDLQSGILHAADERDF----------KTAFSY  203 (394)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHTTSCH----------HHHHHH
T ss_pred             HHHHHHHHHHHHH----hccHHHHHHHHHHHHhhhc-cCCCCHHHHHHHHHHhhHHHHHhccCH----------HHHHHH
Confidence            2445555666777    9999999976666655433 2212222 2334455577777 78888          999888


Q ss_pred             HHHHHHh
Q 010976          282 FRAAIQL  288 (496)
Q Consensus       282 ~~~Al~l  288 (496)
                      |-++++-
T Consensus       204 F~eaf~~  210 (394)
T 3txn_A          204 FYEAFEG  210 (394)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            8888753

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=80.64  E-value=35  Score=38.36  Aligned_cols=99  Identities=10%  Similarity=-0.121  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010976          156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL----CPTLHDAFYNWAIAISDRAKMRGRTKEAEELW  231 (496)
Q Consensus       156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~  231 (496)
                      ...+..+-..|.+.|+              +++|...|.+.-+.    ..-+...|+-+-..|..    .|+.++|.   
T Consensus       127 ~~TynaLIdglcK~G~--------------leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck----~G~~~eA~---  185 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQ--------------LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR----QGAFKELV---  185 (1134)
T ss_dssp             HHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHH----HTCHHHHH---
T ss_pred             HHHHHHHHHHHHhCCC--------------HHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHh----CCCHHHHH---
Confidence            3457778888999999              99999999775432    23367789999999999    99999999   


Q ss_pred             HHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc
Q 010976          232 KQATKNYEKAVQ--LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ  289 (496)
Q Consensus       232 ~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~  289 (496)
                          +.|++..+  +.| +...|+.+-.++.+.|+.         .++|...|++..+..
T Consensus       186 ----~Lf~eM~~~G~~P-DvvTYntLI~glcK~G~~---------~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          186 ----YVLFMVKDAGLTP-DLLSYAAALQCMGRQDQD---------AGTIERCLEQMSQEG  231 (1134)
T ss_dssp             ----HHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCC---------HHHHHHHHHHHHHHT
T ss_pred             ----HHHHHHHHcCCCC-cHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHcC
Confidence                66666654  345 778888888899999985         156777888777653

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.64  E-value=4.2  Score=32.80  Aligned_cols=43  Identities=14%  Similarity=0.225  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN  247 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~  247 (496)
                      +++|..+..+||.++               .    .|+-++|+++|+++|..++++|.+..+
T Consensus        19 h~~AF~~Is~AL~~D---------------E----~g~k~~Al~lYk~GI~eLe~Gl~I~~~   61 (116)
T 2dl1_A           19 YKKAFLFVNKGLNTD---------------E----LGQKEEAKNYYKQGIGHLLRGISISSK   61 (116)
T ss_dssp             HHHHHHHHHHHHHHH---------------H----HTCHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             HHHHHHHHHHHhhhh---------------h----cCCHHHHHHHHHHHHHHHHHhcccccc
Confidence            566666666666543               4    799999999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	496
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.003
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-09
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-05
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	7e-06
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	9e-05
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	1e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	3e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-04
d1zu2a1	145	a.118.8.1 (A:1-145) Mitochondrial import receptor	3e-04
d1u5fa1	111	b.55.1.1 (A:109-219) Src-associated adaptor protei	5e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	8e-04
d1plsa_	113	b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [Ta	0.001
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.003
d1fgya_	127	b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 1	0.004

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.6 bits (161), Expect = 2e-12
 Identities = 43/166 (25%), Positives = 64/166 (38%), Gaps = 35/166 (21%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A   Y  AIE  P   DA  N A  L+E                 + EA   Y+ A RLC
Sbjct: 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGS--------------VAEAEDCYNTALRLC 301

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           PT  D+  N A       + +G  +EA  L       Y KA+++      A +N    LQ
Sbjct: 302 PTHADSLNNLANI----KREQGNIEEAVRL-------YRKALEVFPEFAAAHSNLASVLQ 350

Query: 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
           +   +          + A+  ++ AI++   F  A  N+G  L  +
Sbjct: 351 QQGKL----------QEALMHYKEAIRISPTFADAYSNMGNTLKEM 386

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (149), Expect = 5e-11
 Identities = 37/190 (19%), Positives = 61/190 (32%), Gaps = 49/190 (25%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A   +  A+  +P   DA  N   VL+E+                 + A   Y  A  L 
Sbjct: 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARI--------------FDRAVAAYLRALSLS 233

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P       N A    ++    G    A +        Y +A++L  + P A  N   AL+
Sbjct: 234 PNHAVVHGNLACVYYEQ----GLIDLAIDT-------YRRAIELQPHFPDAYCNLANALK 282

Query: 261 ELSAIVPAREKQTIVRT------------------------AISKFRAAIQLQFDFHRAI 296
           E  ++  A +                               A+  +R A+++  +F  A 
Sbjct: 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342

Query: 297 YNLGTVLYGL 306
            NL +VL   
Sbjct: 343 SNLASVLQQQ 352

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 10/75 (13%), Positives = 19/75 (25%), Gaps = 11/75 (14%)

Query: 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 245
            E A +   +  R  P         +           R   +             A++ N
Sbjct: 15  FEAAERHCMQLWRQEPDNTGVLLLLSSI----HFQCRRLDRSAHF-------STLAIKQN 63

Query: 246 WNSPQALNNWGLALQ 260
               +A +N G   +
Sbjct: 64  PLLAEAYSNLGNVYK 78

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 10/74 (13%)

Query: 231 WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 290
           ++ A ++  +  +   ++   L        +   +            +      AI+   
Sbjct: 15  FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRL----------DRSAHFSTLAIKQNP 64

Query: 291 DFHRAIYNLGTVLY 304
               A  NLG V  
Sbjct: 65  LLAEAYSNLGNVYK 78

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 14/73 (19%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A +       + P++   L   + +  +                 L+ +      A +  
Sbjct: 18  AERHCMQLWRQEPDNTGVLLLLSSIHFQCRR--------------LDRSAHFSTLAIKQN 63

Query: 201 PTLHDAFYNWAIA 213
           P L +A+ N    
Sbjct: 64  PLLAEAYSNLGNV 76

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 41/233 (17%), Positives = 58/233 (24%), Gaps = 67/233 (28%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           +A     AI++NP   +A  N   V +E                L  +    Y       
Sbjct: 52  SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL 111

Query: 201 PTLHDAFYNWAIAISDRAKM---------------------------------------- 220
               D        +S                                             
Sbjct: 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171

Query: 221 ---RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE------- 270
               G    A+     A  ++EKAV L+ N   A  N G  L+E      A         
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231

Query: 271 -----------------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306
                            +Q ++  AI  +R AI+LQ  F  A  NL   L   
Sbjct: 232 LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK 284

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 1e-09
 Identities = 22/185 (11%), Positives = 47/185 (25%), Gaps = 47/185 (25%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK-------Y 193
           +A+    A     +  D+    A V                    L++  +K       Y
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPAEVWTSRQA--------------LQDLYQKMLVTDLEY 50

Query: 194 DEATRLCPTLH-DAFYNWAIAISDRAK-------------MRGRTKEAEELWKQATKNYE 239
               ++   L   AF N    +  +AK             +    + A   + Q  +   
Sbjct: 51  ALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELC 110

Query: 240 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL 299
               ++       +  G+             KQT     +    ++          + +L
Sbjct: 111 TVFNVDLPCRVKSSQLGIISN----------KQTHTSAIVKPQSSSCSY--ICQHCLVHL 158

Query: 300 GTVLY 304
           G +  
Sbjct: 159 GDIAR 163

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 11/173 (6%), Positives = 30/173 (17%), Gaps = 39/173 (22%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
             +        +           ++  +                      K    +    
Sbjct: 105 LLQELCTVFNVDLPCRVKSSQLGIISNKQTH--------------TSAIVKPQSSSCSYI 150

Query: 201 PTLHDAFYNWAIAISDRAK-----------------------MRGRTKEAEELWKQATKN 237
                   +       R +                              ++         
Sbjct: 151 C--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFY 208

Query: 238 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 290
           Y +++ + +  P A  N   AL +        + +  V   I  F       +
Sbjct: 209 YCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVY 261

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.8 bits (107), Expect = 7e-06
 Identities = 18/199 (9%), Positives = 58/199 (29%), Gaps = 26/199 (13%)

Query: 108 HQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQ 167
            +  ++         +V    + G   + +L       +  +  NP+          VLQ
Sbjct: 19  LEREQKLKLYQSATQAVFQKRQAGELDESVLEL----TSQILGANPDFATLWNCRREVLQ 74

Query: 168 ESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEA 227
               ++  + +     AL++      +   R+ P  +  +++    +S   +        
Sbjct: 75  ----HLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP------- 123

Query: 228 EELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 287
              W +  +   + ++ +  +    +       +                 ++   + I 
Sbjct: 124 --NWARELELCARFLEADERNFHCWDYRRFVAAQA---------AVAPAEELAFTDSLIT 172

Query: 288 LQFDFHRAIYNLGTVLYGL 306
             F  + + +    +L  L
Sbjct: 173 RNFSNYSSWHYRSCLLPQL 191

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 41.9 bits (98), Expect = 9e-05
 Identities = 15/129 (11%), Positives = 36/129 (27%), Gaps = 14/129 (10%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
           A +    AI+ +P+D     ++  +L    D               E A ++  ++ +L 
Sbjct: 15  ALELLIEAIKASPKDASLRSSFIELLCIDGD--------------FERADEQLMQSIKLF 60

Query: 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260
           P            +      +   + A                +++N      ++    +
Sbjct: 61  PEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSE 120

Query: 261 ELSAIVPAR 269
               I   R
Sbjct: 121 LALQIEELR 129

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 31/210 (14%), Positives = 60/210 (28%), Gaps = 22/210 (10%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYD-EATRL 199
           A K   +AIE N  +Y   +   ++L+    +  L        A++EE  K Y     R 
Sbjct: 62  AFKLTRDAIELNAANYTVWHFRRVLLKSLQKD--LHEEMNYITAIIEEQPKNYQVWHHRR 119

Query: 200 CPTLHDAFYNWAIAISDRAKM-----------RGRTKEAEELWKQATKNYEKAVQLNWNS 248
                    +  +                   R    +  +LW    +  ++ ++ +  +
Sbjct: 120 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 179

Query: 249 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL-- 306
               N     +   +        +  V+         I+L      A   L  +L     
Sbjct: 180 NSVWNQRYFVISNTTGYNDRAVLEREVQ----YTLEMIKLVPHNESAWNYLKGILQDRGL 235

Query: 307 --AEDTLRTGGTVNPREVSPNELYSQSAIY 334
               + L     + P   SP  +     IY
Sbjct: 236 SKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 3e-04
 Identities = 19/183 (10%), Positives = 41/183 (22%), Gaps = 48/183 (26%)

Query: 148 AIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF 207
            I  + +  D    +  VLQ              +D   E A K   +A  L    +  +
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQ--------------RDERSERAFKLTRDAIELNAANYTVW 80

Query: 208 YNWAIAISDRAK------------------------MRGRTKEAEELWKQATKNYEKAVQ 243
           +   + +    K                         R    E      Q  +     + 
Sbjct: 81  HFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN 140

Query: 244 LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 303
            +  +  A  +    +QE            +    +      ++     +        V+
Sbjct: 141 QDAKNYHAWQHRQWVIQEF----------KLWDNELQYVDQLLKEDVRNNSVWNQRYFVI 190

Query: 304 YGL 306
              
Sbjct: 191 SNT 193

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 21/123 (17%)

Query: 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 245
             EA   Y  A    P +   + N A+      +            +QA  +  +A++L+
Sbjct: 20  YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-----------PEQALADCRRALELD 68

Query: 246 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 305
             S +A    G    E+ +             AI+  + A  L  +      +       
Sbjct: 69  GQSVKAHFFLGQCQLEMESY----------DEAIANLQRAYSLAKEQRLNFGDDIPSALR 118

Query: 306 LAE 308
           +A+
Sbjct: 119 IAK 121

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.1 bits (89), Expect = 3e-04
 Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 135 QRILTF--AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK 192
            RIL F    +   N  + NP D D L  W  VL E +       +      +++EA  K
Sbjct: 8   DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFH----SISDAKQMIQEAITK 63

Query: 193 YDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL 252
           ++EA  + P   +A +    A +  A +     EA+  +  AT+ +++AV    ++   L
Sbjct: 64  FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 123

Query: 253 NNWGLALQEL 262
            +  +  +  
Sbjct: 124 KSLEMTAKAP 133

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 5e-04
 Identities = 14/115 (12%), Positives = 29/115 (25%), Gaps = 15/115 (13%)

Query: 364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRR 423
           +KAGYL              W++    L+         ++ KQ                 
Sbjct: 10  IKAGYLEKRRKDHSFLGFE-WQKRWCALSKTVFYYYGSDKDKQQKGE------------- 55

Query: 424 AIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLV 478
              I+  D+   +                         A S +  + W+  ++ +
Sbjct: 56  -FAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFI 109

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 8e-04
 Identities = 13/125 (10%), Positives = 32/125 (25%), Gaps = 24/125 (19%)

Query: 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200
             K++ +            + +A  L  +  N             + +     +E     
Sbjct: 18  FEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYN-----------DDIRKGIVLLEELLPKG 66

Query: 201 PTLH--DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 258
                 D  +  A+      +           +++A K     +Q    + QA     L 
Sbjct: 67  SKEEQRDYVFYLAVGNYRLKE-----------YEKALKYVRGLLQTEPQNNQAKELERLI 115

Query: 259 LQELS 263
            + + 
Sbjct: 116 DKAMK 120

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 20/115 (17%), Positives = 29/115 (25%), Gaps = 21/115 (18%)

Query: 364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRR 423
           ++ GYL    +       + WK    VL  +G++   K                      
Sbjct: 6   IREGYLVKKGSVF-----NTWKPMWVVLLEDGIEFYKKKSDNSPKGM------------- 47

Query: 424 AIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLV 478
              I +      S C D            T     F  A   E  D W+  I   
Sbjct: 48  ---IPLKGSTLTSPCQDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKA 99

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 14/103 (13%)

Query: 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 245
            + A K YD+A  L PT      N A         +G   +  EL ++A +   +  +  
Sbjct: 20  FDTALKHYDKAKELDPTNMTYITNQAA----VYFEKGDYNKCRELCEKAIEVGRENREDY 75

Query: 246 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 288
               +A    G +  +              + AI  +  ++  
Sbjct: 76  RQIAKAYARIGNSYFKEEKY----------KDAIHFYNKSLAE 108

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.2 bits (80), Expect = 0.004
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 3/98 (3%)

Query: 384 WKRSQFVLNHEGLQQASKNEQKQVTRSL---SGRTGDFSPDRRAIRIEVPDIVSVSACAD 440
           WKR  F+L    L        K+    +   +    +    R+    E+ +         
Sbjct: 21  WKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLDPRKPNCFELYNPSHKGQVIK 80

Query: 441 LTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLV 478
                  G  +E  H    + A S E  + W+ +I+  
Sbjct: 81  ACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKAS 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	496
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.88
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.86
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.85
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.84
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.83
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.82
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.75
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.7
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.7
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.68
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.67
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.66
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.65
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.64
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.62
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.61
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.56
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.54
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.54
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.54
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.53
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.53
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.51
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.49
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.49
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.49
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.49
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.46
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.44
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.44
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.43
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.35
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.33
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.32
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.24
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.22
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.19
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.18
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.17
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.16
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.06
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.86
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.86
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.85
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.84
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.42
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.32
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.25
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.24
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.14
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	97.48
d2coaa1	112	Protein kinase c, d2 type {Human (Homo sapiens) [T	97.35
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	97.24
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	97.1
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	97.1
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	96.91
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	96.75
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	96.63
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	96.57
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	96.56
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	96.49
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	96.48
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	96.44
d1v5ua_	117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	96.43
d1v5pa_	126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	96.35
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	96.18
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	96.16
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	96.12
d1wi1a_	126	Calcium-dependent activator protein for secretion,	96.08
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	95.97
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	95.96
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	95.66
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	95.51
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	95.49
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	95.39
d1u5ea1	209	Src-associated adaptor protein Skap2 {Mouse (Mus m	95.26
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	95.19
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	95.18
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	94.82
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	94.8
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	94.8
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	94.64
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	94.36
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	94.03
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	93.55
d1fgya_	127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	91.33
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	90.97
d1maia_	119	Phospholipase C delta-1 {Rat (Rattus norvegicus) [	87.8
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	87.64
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	80.6

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.1e-21  Score=189.58  Aligned_cols=178  Identities=18%  Similarity=0.226  Sum_probs=120.3

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  211 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  211 (496)
                      +...|++++|+..|+++++.+|+++++|+.+|.++..+|+              +++|+.+|+++++++|++..+++++|
T Consensus        29 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~la   94 (323)
T d1fcha_          29 RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ--------------ELLAISALRRCLELKPDNQTALMALA   94 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHhhhcccccccccccccc
Confidence            4445677777777777777777777777777777777777              77777777777777777777777777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHH------------------------------------------HHHHHHHHHhcCCC--
Q 010976          212 IAISDRAKMRGRTKEAEELWKQ------------------------------------------ATKNYEKAVQLNWN--  247 (496)
Q Consensus       212 ~~~~~~~~~~g~~~eA~~~~~~------------------------------------------A~~~~~~Al~l~P~--  247 (496)
                      .+|..    .|++++|++.|++                                          |+..|.++++++|+  
T Consensus        95 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~  170 (323)
T d1fcha_          95 VSFTN----ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI  170 (323)
T ss_dssp             HHHHH----TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred             ccccc----cccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccc
Confidence            77766    7777666655422                                          44455555666554  


Q ss_pred             CHHHHHHHHHHHHHccCcchH------------------------HHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010976          248 SPQALNNWGLALQELSAIVPA------------------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL  303 (496)
Q Consensus       248 ~~~a~~~lg~~l~~~g~~~~A------------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~  303 (496)
                      ++.+++++|.++..+|++++|                        +...|++++|+..|+++++++|+++.+++++|.+|
T Consensus       171 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  250 (323)
T d1fcha_         171 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC  250 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            345555666666666666433                        11334448888888888888888888888888888


Q ss_pred             HHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          304 YGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       304 ~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                      ..+|+                   |.+|+.+|++|++++|++.
T Consensus       251 ~~~g~-------------------~~~A~~~~~~al~l~p~~~  274 (323)
T d1fcha_         251 INLGA-------------------HREAVEHFLEALNMQRKSR  274 (323)
T ss_dssp             HHHTC-------------------HHHHHHHHHHHHHHHHTC-
T ss_pred             HHCCC-------------------HHHHHHHHHHHHHhCCcCh
Confidence            88887                   7788888888888777665

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=8.4e-21  Score=186.34  Aligned_cols=183  Identities=11%  Similarity=0.063  Sum_probs=162.8

Q ss_pred             hcHHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CCCCCCCCCcchhhhHHHHH
Q 010976          112 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA-DNVSLDSTSPSKDALLEEAC  190 (496)
Q Consensus       112 ~~~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~-~~~~~~~~~~~~~~~~~~A~  190 (496)
                      .++.+|+..+..+       +.+++.+++|+.+|++||+++|++..+|+++|.++..++ +              +++|+
T Consensus        40 p~~~~a~~~~~~~-------~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~--------------~~eal   98 (315)
T d2h6fa1          40 DKFRDVYDYFRAV-------LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD--------------LHEEM   98 (315)
T ss_dssp             HHHHHHHHHHHHH-------HHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC--------------HHHHH
T ss_pred             HHHHHHHHHHHHH-------HHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcC--------------HHHHH
Confidence            4455555554433       344688999999999999999999999999999999986 5              99999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHH
Q 010976          191 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE  270 (496)
Q Consensus       191 ~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~  270 (496)
                      .+|+++++++|++..+|+++|.++..    +|++++|+       ..|.++++++|++..+|+++|.++..+|++     
T Consensus        99 ~~~~~al~~~p~~~~a~~~~~~~~~~----l~~~~eAl-------~~~~kal~~dp~n~~a~~~~~~~~~~~~~~-----  162 (315)
T d2h6fa1          99 NYITAIIEEQPKNYQVWHHRRVLVEW----LRDPSQEL-------EFIADILNQDAKNYHAWQHRQWVIQEFKLW-----  162 (315)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHTCC-----
T ss_pred             HHHHHHHHHHHhhhhHHHHHhHHHHh----hccHHHHH-------HHHhhhhhhhhcchHHHHHHHHHHHHHHhh-----
Confidence            99999999999999999999999999    99999999       899999999999999999999999999999     


Q ss_pred             hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHH
Q 010976          271 KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS  349 (496)
Q Consensus       271 ~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~  349 (496)
                           ++|+.+|+++|+++|++..+|+++|.++...++             ......+.+|..++.+++.++|.+....
T Consensus       163 -----~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~-------------~~~~~~~~~ai~~~~~al~~~P~~~~~~  223 (315)
T d2h6fa1         163 -----DNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG-------------YNDRAVLEREVQYTLEMIKLVPHNESAW  223 (315)
T ss_dssp             -----TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------SCSHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             -----HHHHHHHHHHHHHCCccHHHHHHHHHHHHHccc-------------cchhhhhHHhHHHHHHHHHhCCCchHHH
Confidence                 999999999999999999999999999998875             2233457899999999999999988433

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5.1e-20  Score=181.50  Aligned_cols=190  Identities=24%  Similarity=0.291  Sum_probs=142.5

Q ss_pred             hhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 010976          110 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS  179 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~  179 (496)
                      ..+.++.|...+.+++...          +..+...|++++|+..|++++..+|.....+..+|.++...|+        
T Consensus       181 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------  252 (388)
T d1w3ba_         181 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL--------  252 (388)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------
T ss_pred             ccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCC--------
Confidence            4456666666666655443          2234445666777777777777777777777777777777766        


Q ss_pred             cchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010976          180 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL  259 (496)
Q Consensus       180 ~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  259 (496)
                            +++|+..|+++++++|+++.+++++|.++..    .|++.+|+       ..|++++...|.+...+..+|.++
T Consensus       253 ------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~l~~~~  315 (388)
T d1w3ba_         253 ------IDLAIDTYRRAIELQPHFPDAYCNLANALKE----KGSVAEAE-------DCYNTALRLCPTHADSLNNLANIK  315 (388)
T ss_dssp             ------HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH----HSCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHhhhccCCccchhhhHHHHHH
Confidence                  7777777777777777777777777777777    77777766       566666667777777777777777


Q ss_pred             HHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHH
Q 010976          260 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAH  339 (496)
Q Consensus       260 ~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~  339 (496)
                      ...|++          ++|+..|+++++++|+++.+++++|.+|..+|+                   +.+|..+|++++
T Consensus       316 ~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~al  366 (388)
T d1w3ba_         316 REQGNI----------EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK-------------------LQEALMHYKEAI  366 (388)
T ss_dssp             HTTTCH----------HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC-------------------CHHHHHHHHHHH
T ss_pred             HHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHH
Confidence            777776          999999999999999999999999999999999                   899999999999


Q ss_pred             hcCCcHHHHHHHHH
Q 010976          340 ALKPSYSVYSSALR  353 (496)
Q Consensus       340 ~l~p~~~~y~~al~  353 (496)
                      +++|++......+.
T Consensus       367 ~l~P~~~~a~~~lg  380 (388)
T d1w3ba_         367 RISPTFADAYSNMG  380 (388)
T ss_dssp             TTCTTCHHHHHHHH
T ss_pred             HhCCCCHHHHHHHH
Confidence            99999986554443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.6e-19  Score=176.37  Aligned_cols=77  Identities=34%  Similarity=0.340  Sum_probs=68.7

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchH------------------------HHhhhhHHHHHHHHHHHHHhc
Q 010976          234 ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA------------------------REKQTIVRTAISKFRAAIQLQ  289 (496)
Q Consensus       234 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A------------------------~~~~~~~~~Ai~~~~~Al~l~  289 (496)
                      |+..++++++++|++..++.++|.++...|++++|                        ....|++++|+..|+++++++
T Consensus       188 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  267 (388)
T d1w3ba_         188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ  267 (388)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            66889999999999999999999999999999887                        225788999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcchhH
Q 010976          290 FDFHRAIYNLGTVLYGLAEDT  310 (496)
Q Consensus       290 P~~~~a~~~lg~~~~~~g~~~  310 (496)
                      |+++.+++++|.++...|+..
T Consensus       268 p~~~~~~~~l~~~~~~~~~~~  288 (388)
T d1w3ba_         268 PHFPDAYCNLANALKEKGSVA  288 (388)
T ss_dssp             SSCHHHHHHHHHHHHHHSCHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999843

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=6.5e-20  Score=173.01  Aligned_cols=180  Identities=19%  Similarity=0.164  Sum_probs=158.9

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY  208 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~  208 (496)
                      +..+..+|++++|+..|+++|+++|+++.+|+++|.+|..+|+              +++|+..|+++++++|+++.+++
T Consensus        44 G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~a~~  109 (259)
T d1xnfa_          44 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN--------------FDAAYEAFDSVLELDPTYNYAHL  109 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCTHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHH--------------HHHhhhhhhHHHHHHhhhhhhHH
Confidence            4557788999999999999999999999999999999999999              99999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchH--------------------
Q 010976          209 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA--------------------  268 (496)
Q Consensus       209 ~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A--------------------  268 (496)
                      ++|.+|..    +|++++|+       ..|+++++++|++...+..++.++...+....+                    
T Consensus       110 ~lg~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (259)
T d1xnfa_         110 NRGIALYY----GGRDKLAQ-------DDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIV  178 (259)
T ss_dssp             HHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHH
T ss_pred             HHHHHHHH----HhhHHHHH-------HHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHH
Confidence            99999999    99999999       899999999999999998888888877754332                    


Q ss_pred             ------HHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 010976          269 ------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK  342 (496)
Q Consensus       269 ------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~  342 (496)
                            ....+.+..+...+..++.+.|+...+++++|.+|..+|+                   +..|..+|++++..+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-------------------~~~A~~~~~~al~~~  239 (259)
T d1xnfa_         179 EFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD-------------------LDSATALFKLAVANN  239 (259)
T ss_dssp             HHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHHcC
Confidence                  0134557777778888888889999999999999999999                   999999999999999


Q ss_pred             CcHH-HHHHHH
Q 010976          343 PSYS-VYSSAL  352 (496)
Q Consensus       343 p~~~-~y~~al  352 (496)
                      |++- .|+.++
T Consensus       240 p~~~~~~~~a~  250 (259)
T d1xnfa_         240 VHNFVEHRYAL  250 (259)
T ss_dssp             CTTCHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            9764 444443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=8.9e-20  Score=178.93  Aligned_cols=170  Identities=11%  Similarity=0.068  Sum_probs=154.4

Q ss_pred             hhhhcHHHHHHHHHHhhccch----------hhhHhhc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 010976          109 QLAEQNNAAMELINSVTGVDE----------EGRSRQR-ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS  177 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~l~~~~----------~~~~~~g-~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~  177 (496)
                      ...+.+++|+.++.+++...+          ..+...| ++++|+..|+++++++|++..+|+++|.++..+|+      
T Consensus        54 ~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~------  127 (315)
T d2h6fa1          54 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD------  127 (315)
T ss_dssp             HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC------
T ss_pred             HhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhcc------
Confidence            345678899999999998882          2333444 69999999999999999999999999999999999      


Q ss_pred             CCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976          178 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL  257 (496)
Q Consensus       178 ~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~  257 (496)
                              +++|++.|+++++++|++..+|+++|.++..    +|++++|+       .+|+++|+++|.+..+|+++|.
T Consensus       128 --------~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~----~~~~~~Al-------~~~~~al~~~p~n~~a~~~r~~  188 (315)
T d2h6fa1         128 --------PSQELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNEL-------QYVDQLLKEDVRNNSVWNQRYF  188 (315)
T ss_dssp             --------CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHH-------HHHHHHHHHCTTCHHHHHHHHH
T ss_pred             --------HHHHHHHHhhhhhhhhcchHHHHHHHHHHHH----HHhhHHHH-------HHHHHHHHHCCccHHHHHHHHH
Confidence                    9999999999999999999999999999999    99999999       8999999999999999999999


Q ss_pred             HHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976          258 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  307 (496)
Q Consensus       258 ~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g  307 (496)
                      ++..++.+    ...+.+++|+..|.++++++|++..+|+++|.++...+
T Consensus       189 ~l~~~~~~----~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~  234 (315)
T d2h6fa1         189 VISNTTGY----NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG  234 (315)
T ss_dssp             HHHHTTCS----CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred             HHHHcccc----chhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC
Confidence            99999886    34566789999999999999999999999999987665

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=1.8e-17  Score=162.95  Aligned_cols=179  Identities=11%  Similarity=0.060  Sum_probs=161.2

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHH-HHHH
Q 010976          133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF-YNWA  211 (496)
Q Consensus       133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~-~~lg  211 (496)
                      ...|++.+|+.+|+++++.+|++..+|+.+|.++...++            +++++|+..++++++++|.+..++ +.+|
T Consensus        84 ~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~------------~~~~~a~~~~~~al~~~~~~~~~~~~~~~  151 (334)
T d1dcea1          84 ESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE------------PNWARELELCARFLEADERNFHCWDYRRF  151 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS------------CCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcc------------ccHHHHHHHHHHHHhhCchhhhhhhhHHH
Confidence            345778999999999999999999999999999988775            338999999999999999999886 5778


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchH-----------------------
Q 010976          212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA-----------------------  268 (496)
Q Consensus       212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A-----------------------  268 (496)
                      .++..    .+++++|+       ..++++++++|.+..+|+++|.++..+|++++|                       
T Consensus       152 ~~~~~----~~~~~~Al-------~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  220 (334)
T d1dcea1         152 VAAQA----AVAPAEEL-------AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF  220 (334)
T ss_dssp             HHHHT----CCCHHHHH-------HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHh----ccccHHHH-------HHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHH
Confidence            88888    99999999       899999999999999999999999999999876                       


Q ss_pred             -------------------------------HHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCC
Q 010976          269 -------------------------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTV  317 (496)
Q Consensus       269 -------------------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~  317 (496)
                                                     ....+++.+|+..|.+++..+|++..++.++|.++..+|+         
T Consensus       221 l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~---------  291 (334)
T d1dcea1         221 TDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY---------  291 (334)
T ss_dssp             HCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG---------
T ss_pred             hcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCC---------
Confidence                                           1146889999999999999999999999999999999998         


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 010976          318 NPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALR  353 (496)
Q Consensus       318 ~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~  353 (496)
                                +.+|..+|.++++++|.+..|...|.
T Consensus       292 ----------~~eA~~~~~~ai~ldP~~~~y~~~L~  317 (334)
T d1dcea1         292 ----------EKETLQYFSTLKAVDPMRAAYLDDLR  317 (334)
T ss_dssp             ----------HHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHHHHCcccHHHHHHHH
Confidence                      89999999999999999997776553

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.7e-16  Score=151.71  Aligned_cols=158  Identities=15%  Similarity=0.185  Sum_probs=135.7

Q ss_pred             hhhhhhcHHHHHHHHHHhhccch-------------------------hhhHhhccHHHHHHHHHHHHHhCCC--CHHHH
Q 010976          107 PHQLAEQNNAAMELINSVTGVDE-------------------------EGRSRQRILTFAAKRYANAIERNPE--DYDAL  159 (496)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~l~~~~-------------------------~~~~~~g~~~~Ai~~~~~al~~~P~--~~~a~  159 (496)
                      .+...++++.|+..+.+++....                         ......+.+.+|+..|.+++.++|+  ++.++
T Consensus        96 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~  175 (323)
T d1fcha_          96 SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ  175 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred             cccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccc
Confidence            34567788888888888776541                         1123457889999999999999987  47889


Q ss_pred             HHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 010976          160 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE  239 (496)
Q Consensus       160 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~  239 (496)
                      ..+|.++..+|+              +++|+..|++++.++|+++.+|+++|.+|..    +|++++|+       ..|+
T Consensus       176 ~~l~~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~-------~~~~  230 (323)
T d1fcha_         176 CGLGVLFNLSGE--------------YDKAVDCFTAALSVRPNDYLLWNKLGATLAN----GNQSEEAV-------AAYR  230 (323)
T ss_dssp             HHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHH
T ss_pred             hhhHHHHHHHHH--------------Hhhhhcccccccccccccccchhhhhhcccc----cccchhHH-------HHHH
Confidence            999999999999              9999999999999999999999999999999    99999999       8999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHH
Q 010976          240 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL  299 (496)
Q Consensus       240 ~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~l  299 (496)
                      ++++++|+++.+++++|.+|..+|++          ++|+..|++||+++|++..++..+
T Consensus       231 ~al~~~p~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~l~p~~~~~~~~~  280 (323)
T d1fcha_         231 RALELQPGYIRSRYNLGISCINLGAH----------REAVEHFLEALNMQRKSRGPRGEG  280 (323)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHTC------C
T ss_pred             HHHHHhhccHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCcChhhhhhh
Confidence            99999999999999999999999999          999999999999999987655443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=7.6e-16  Score=144.56  Aligned_cols=138  Identities=17%  Similarity=0.100  Sum_probs=126.9

Q ss_pred             ccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976          136 RILTFAAKRYANAIERN----PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  211 (496)
Q Consensus       136 g~~~~Ai~~~~~al~~~----P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  211 (496)
                      .+.+.|+..+++++...    +..+.+++++|.+|..+|+              +++|+..|++++.++|+++.+|+++|
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~--------------~~~A~~~~~~al~l~p~~~~a~~~lg   78 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGL--------------RALARNDFSQALAIRPDMPEVFNYLG   78 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHhhccCCCCHHHHhhhc
Confidence            45667777788887653    3456799999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976          212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  291 (496)
Q Consensus       212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~  291 (496)
                      .+|..    +|++++|+       ..|+++++++|+++.+++++|.+|..+|++          ++|+..|+++++++|+
T Consensus        79 ~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~  137 (259)
T d1xnfa_          79 IYLTQ----AGNFDAAY-------EAFDSVLELDPTYNYAHLNRGIALYYGGRD----------KLAQDDLLAFYQDDPN  137 (259)
T ss_dssp             HHHHH----TTCHHHHH-------HHHHHHHHHCTTCTHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTT
T ss_pred             hHHHH----HHHHHHhh-------hhhhHHHHHHhhhhhhHHHHHHHHHHHhhH----------HHHHHHHHHHHhhccc
Confidence            99999    99999999       899999999999999999999999999999          9999999999999999


Q ss_pred             CHHHHHHHHHHHHHcch
Q 010976          292 FHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       292 ~~~a~~~lg~~~~~~g~  308 (496)
                      +......++.++...+.
T Consensus       138 ~~~~~~~~~~~~~~~~~  154 (259)
T d1xnfa_         138 DPFRSLWLYLAEQKLDE  154 (259)
T ss_dssp             CHHHHHHHHHHHHHHCH
T ss_pred             cHHHHHHHHHHHHHhhh
Confidence            99999999988888775

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.7e-16  Score=130.58  Aligned_cols=112  Identities=18%  Similarity=0.170  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 010976          158 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN  237 (496)
Q Consensus       158 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~  237 (496)
                      -+...|..++..|+              |++|+.+|+++|+++|+++.+|+++|.+|..    +|++++|+       ..
T Consensus         5 ~l~~~g~~~~~~g~--------------~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~-------~~   59 (117)
T d1elwa_           5 ELKEKGNKALSVGN--------------IDDALQCYSEAIKLDPHNHVLYSNRSAAYAK----KGDYQKAY-------ED   59 (117)
T ss_dssp             HHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHH-------HH
T ss_pred             HHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCcchhhhhcccccccc----cccccccc-------hh
Confidence            35678999999999              9999999999999999999999999999999    99999999       89


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010976          238 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY  304 (496)
Q Consensus       238 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~  304 (496)
                      |.++++++|+++.+|+++|.++..+|++          ++|+..|+++++++|+++.++.+++.+..
T Consensus        60 ~~~al~~~p~~~~~~~~~g~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          60 GCKTVDLKPDWGKGYSRKAAALEFLNRF----------EEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             hhhHHHhccchhhHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            9999999999999999999999999999          99999999999999999999999988753

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.1e-15  Score=138.25  Aligned_cols=143  Identities=11%  Similarity=0.076  Sum_probs=118.5

Q ss_pred             HHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHH
Q 010976          115 NAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYD  194 (496)
Q Consensus       115 ~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  194 (496)
                      .+|+.++++++     .+...|+|++|+..|.+   +.|.++.+|+++|.+|..+|+              +++|+.+|+
T Consensus         3 ~~~~~l~~~g~-----~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~--------------~~~A~~~~~   60 (192)
T d1hh8a_           3 VEAISLWNEGV-----LAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKN--------------MTEAEKAFT   60 (192)
T ss_dssp             HHHHHHHHHHH-----HHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTC--------------HHHHHHHHH
T ss_pred             HHHHHHHHHHH-----HHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCC--------------chhHHHHHH
Confidence            34556665433     24567999999999986   467789999999999999999              999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC----------------CHHHHHHHHHH
Q 010976          195 EATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN----------------SPQALNNWGLA  258 (496)
Q Consensus       195 ~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~----------------~~~a~~~lg~~  258 (496)
                      +|++++|+++.+|+++|.++..    +|++++|++       .|++|+...+.                ..++++++|.+
T Consensus        61 kAl~ldp~~~~a~~~~g~~~~~----~g~~~~A~~-------~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~  129 (192)
T d1hh8a_          61 RSINRDKHLAVAYFQRGMLYYQ----TEKYDLAIK-------DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM  129 (192)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHH-------HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhhHHHHHHHHHh----hccHHHHHH-------HHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHH
Confidence            9999999999999999999999    999999995       55555544332                25789999999


Q ss_pred             HHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010976          259 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG  300 (496)
Q Consensus       259 l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg  300 (496)
                      +..+|++          ++|+..|.+|+++.|+........+
T Consensus       130 ~~~~~~~----------~~A~~~l~~A~~~~~~~~~~~~~~A  161 (192)
T d1hh8a_         130 YAKKEEW----------KKAEEQLALATSMKSEPRHSKIDKA  161 (192)
T ss_dssp             HHHTTCH----------HHHHHHHHHHHTTCCSGGGGHHHHH
T ss_pred             HHHCCCH----------HHHHHHHHHHHhcCCCcchHHHHHH
Confidence            9999999          9999999999999987544333333

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.8e-15  Score=132.38  Aligned_cols=117  Identities=16%  Similarity=0.112  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010976          157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK  236 (496)
Q Consensus       157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~  236 (496)
                      +.+...|..|+..|+              |++|+.+|+++++++|++..+|+++|.++..    +|++++|+       .
T Consensus        11 ~~l~~~gn~~~~~~~--------------y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~-------~   65 (159)
T d1a17a_          11 EELKTQANDYFKAKD--------------YENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYAL-------G   65 (159)
T ss_dssp             HHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH-------H
T ss_pred             HHHHHHHHHHHHcCC--------------HHHHHHHhhhccccchhhhhhhhhhHHHHHh----ccccchHH-------H
Confidence            346678999999999              9999999999999999999999999999999    99999999       8


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          237 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       237 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                      .|+++++++|++..+|+++|.++..+|++          ++|+.+|++++.++|++..++..++.+....++
T Consensus        66 ~~~kal~~~p~~~~a~~~~g~~~~~~g~~----------~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  127 (159)
T d1a17a_          66 DATRAIELDKKYIKGYYRRAASNMALGKF----------RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ  127 (159)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccchHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999          999999999999999999999999888655543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=8e-16  Score=127.67  Aligned_cols=106  Identities=19%  Similarity=0.182  Sum_probs=101.1

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY  208 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~  208 (496)
                      +..++..|++++|+..|+++|+.+|+++.+|+++|.+|..+|+              +++|+..|++++.++|+++.+|+
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~   75 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD--------------YQKAYEDGCKTVDLKPDWGKGYS   75 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhccccccccccc--------------ccccchhhhhHHHhccchhhHHH
Confidence            3446678999999999999999999999999999999999999              99999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010976          209 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL  259 (496)
Q Consensus       209 ~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  259 (496)
                      ++|.++..    +|++++|+       ..|+++++++|+++.++.+++.+.
T Consensus        76 ~~g~~~~~----~~~~~~A~-------~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          76 RKAAALEF----LNRFEEAK-------RTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHHHHH----TTCHHHHH-------HHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHH----ccCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHh
Confidence            99999999    99999999       899999999999999999998865

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.8e-15  Score=135.61  Aligned_cols=143  Identities=15%  Similarity=0.185  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 010976          158 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN  237 (496)
Q Consensus       158 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~  237 (496)
                      .+++.|..+...|+              |++|++.|++   +.|.++.+|+++|.+|..    +|++++|+       .+
T Consensus         7 ~l~~~g~~~~~~~d--------------~~~Al~~~~~---i~~~~~~~~~nlG~~~~~----~g~~~~A~-------~~   58 (192)
T d1hh8a_           7 SLWNEGVLAADKKD--------------WKGALDAFSA---VQDPHSRICFNIGCMYTI----LKNMTEAE-------KA   58 (192)
T ss_dssp             HHHHHHHHHHHTTC--------------HHHHHHHHHT---SSSCCHHHHHHHHHHHHH----TTCHHHHH-------HH
T ss_pred             HHHHHHHHHHHCCC--------------HHHHHHHHHh---cCCCCHHHHHHHHHHHHH----cCCchhHH-------HH
Confidence            34578999999999              9999999986   467789999999999999    99999999       89


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC----------------HHHHHHHHH
Q 010976          238 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF----------------HRAIYNLGT  301 (496)
Q Consensus       238 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~----------------~~a~~~lg~  301 (496)
                      |++|++++|+++.+|+++|.++.++|++          ++|+..|++|+...+.+                ..+++++|.
T Consensus        59 ~~kAl~ldp~~~~a~~~~g~~~~~~g~~----------~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~  128 (192)
T d1hh8a_          59 FTRSINRDKHLAVAYFQRGMLYYQTEKY----------DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF  128 (192)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHHhhccH----------HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHH
Confidence            9999999999999999999999999999          99999999999875543                578999999


Q ss_pred             HHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH--HHHHHHHhhhc
Q 010976          302 VLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS--VYSSALRLVRS  357 (496)
Q Consensus       302 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~--~y~~al~~~~~  357 (496)
                      ++..+|+                   +..|...+.+++.++|...  .+..++..+..
T Consensus       129 ~~~~~~~-------------------~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~~  167 (192)
T d1hh8a_         129 MYAKKEE-------------------WKKAEEQLALATSMKSEPRHSKIDKAMECVWK  167 (192)
T ss_dssp             HHHHTTC-------------------HHHHHHHHHHHHTTCCSGGGGHHHHHHHHHHT
T ss_pred             HHHHCCC-------------------HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh
Confidence            9999999                   8999999999999888743  56666655443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.65  E-value=1.3e-15  Score=131.48  Aligned_cols=130  Identities=21%  Similarity=0.245  Sum_probs=112.4

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  211 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  211 (496)
                      +.+++.|++|+..|+++++++|+++++++++|.++..+++.    .......+.+++|+..|++|++++|+++.+|+++|
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~----~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG   82 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQF----HSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG   82 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhh----hhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHH
Confidence            45678899999999999999999999999999999977651    00112345589999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      .+|..+.+..++..++...|++|+.+|+++++++|++..++.+|+.+....+.+
T Consensus        83 ~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~  136 (145)
T d1zu2a1          83 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLH  136 (145)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence            999996666678899999999999999999999999999999999887666555

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=6e-15  Score=128.99  Aligned_cols=109  Identities=19%  Similarity=0.159  Sum_probs=102.5

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY  208 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~  208 (496)
                      +..+++.|+|++|+.+|+++++++|+++.+|+++|.+|..+|+              +++|+.+|+++++++|++..+|+
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--------------~~~A~~~~~kal~~~p~~~~a~~   82 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--------------YGYALGDATRAIELDKKYIKGYY   82 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccc--------------cchHHHHHHHHHHHcccchHHHH
Confidence            4457789999999999999999999999999999999999999              99999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 010976          209 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL  262 (496)
Q Consensus       209 ~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~  262 (496)
                      ++|.++..    +|++++|+       .+|++++.++|++..++..++.+....
T Consensus        83 ~~g~~~~~----~g~~~eA~-------~~~~~a~~~~p~~~~~~~~l~~~~~~~  125 (159)
T d1a17a_          83 RRAASNMA----LGKFRAAL-------RDYETVVKVKPHDKDAKMKYQECNKIV  125 (159)
T ss_dssp             HHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            99999999    99999999       899999999999999999988775433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=1.5e-15  Score=137.07  Aligned_cols=118  Identities=18%  Similarity=0.109  Sum_probs=105.7

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010976          155 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA  234 (496)
Q Consensus       155 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A  234 (496)
                      ++..+...|..|+..|+              |++|+..|++||.++|+++.+|+++|.+|..    +|++++|+      
T Consensus         3 ~a~~l~~~Gn~~~~~g~--------------~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~----~~~~~~Ai------   58 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRK--------------YPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQAL------   58 (201)
T ss_dssp             CHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHH------
T ss_pred             hHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHhHHHHHhh----hhhhhhhh------
Confidence            46778899999999999              9999999999999999999999999999999    99999999      


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976          235 TKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  307 (496)
Q Consensus       235 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g  307 (496)
                       .+|++|++++|+++.+|+++|.+|..+|++          ++|+..|++|++++|++...+..++..+...+
T Consensus        59 -~~~~~al~l~p~~~~a~~~lg~~~~~l~~~----------~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~  120 (201)
T d2c2la1          59 -ADCRRALELDGQSVKAHFFLGQCQLEMESY----------DEAIANLQRAYSLAKEQRLNFGDDIPSALRIA  120 (201)
T ss_dssp             -HHHHHHTTSCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred             -HHHHHHHHhCCCcHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence             899999999999999999999999999999          99999999999999876544444444443333

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.61  E-value=2.1e-15  Score=130.17  Aligned_cols=125  Identities=16%  Similarity=0.197  Sum_probs=108.0

Q ss_pred             CcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010976          179 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK---EAEELWKQATKNYEKAVQLNWNSPQALNNW  255 (496)
Q Consensus       179 ~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~---eA~~~~~~A~~~~~~Al~l~P~~~~a~~~l  255 (496)
                      .+.+++.|++|+..|+++++++|+++.+++++|.++..    ++++.   ++.+.+++|+..|++|++++|+++.+|+++
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~----~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~l   81 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE----LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI   81 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH----hhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhH
Confidence            34566779999999999999999999999999999988    65554   566778999999999999999999999999


Q ss_pred             HHHHHHccCcchH-HHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976          256 GLALQELSAIVPA-REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  307 (496)
Q Consensus       256 g~~l~~~g~~~~A-~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g  307 (496)
                      |.+|..+|++... ....+++++|+.+|++|++++|++..++.+|+.+....+
T Consensus        82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~  134 (145)
T d1zu2a1          82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQ  134 (145)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHH
T ss_pred             HHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHH
Confidence            9999998875322 334567899999999999999999999999999875544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=4.4e-14  Score=138.20  Aligned_cols=153  Identities=11%  Similarity=0.002  Sum_probs=135.2

Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010976          136 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS  215 (496)
Q Consensus       136 g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~  215 (496)
                      +..++|+.+|+++|+++|++..+|+.++.++..++.    .+......+.+++|+.+|+++++.+|++..+|+++|.++.
T Consensus        43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~----~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~  118 (334)
T d1dcea1          43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLET----EKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS  118 (334)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhh----hcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHH
Confidence            345899999999999999999999999999888776    2333456677999999999999999999999999999998


Q ss_pred             HHHHHcCC--HHHHHHHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976          216 DRAKMRGR--TKEAEELWKQATKNYEKAVQLNWNSPQAL-NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  292 (496)
Q Consensus       216 ~~~~~~g~--~~eA~~~~~~A~~~~~~Al~l~P~~~~a~-~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~  292 (496)
                      .    .++  +++|+       ..+.++++++|.+..++ ..+|.++...+.+          ++|+..++++++++|++
T Consensus       119 ~----~~~~~~~~a~-------~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~----------~~Al~~~~~~i~~~p~~  177 (334)
T d1dcea1         119 R----LPEPNWAREL-------ELCARFLEADERNFHCWDYRRFVAAQAAVAP----------AEELAFTDSLITRNFSN  177 (334)
T ss_dssp             T----CSSCCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTCCCH----------HHHHHHHHTTTTTTCCC
T ss_pred             H----hccccHHHHH-------HHHHHHHhhCchhhhhhhhHHHHHHHhcccc----------HHHHHHHHHHHHcCCCC
Confidence            8    765  67777       89999999999999986 5778899999999          99999999999999999


Q ss_pred             HHHHHHHHHHHHHcchhHHhc
Q 010976          293 HRAIYNLGTVLYGLAEDTLRT  313 (496)
Q Consensus       293 ~~a~~~lg~~~~~~g~~~~a~  313 (496)
                      ..+|+++|.++..+|+...+.
T Consensus       178 ~~a~~~l~~~~~~~~~~~~A~  198 (334)
T d1dcea1         178 YSSWHYRSCLLPQLHPQPDSG  198 (334)
T ss_dssp             HHHHHHHHHHHHHHSCCCCSS
T ss_pred             HHHHHHHHHHHHHhcCHHHHH
Confidence            999999999999999765433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.9e-14  Score=118.94  Aligned_cols=117  Identities=10%  Similarity=0.005  Sum_probs=101.9

Q ss_pred             HHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 010976          160 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE  239 (496)
Q Consensus       160 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~  239 (496)
                      .+++..+...++              +++|++.|++++.++|+++.+++++|.++..    .++..    .+++|+..|+
T Consensus         3 ~~l~n~~~~~~~--------------l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~----s~~~~----d~~~Ai~~l~   60 (122)
T d1nzna_           3 EAVLNELVSVED--------------LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR----TRYND----DIRKGIVLLE   60 (122)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT----SSSHH----HHHHHHHHHH
T ss_pred             HHHHHHhcCHHH--------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcchH----HHHHHHHHHH
Confidence            356677778888              9999999999999999999999999999976    66554    2445559999


Q ss_pred             HHHhcCCCC--HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          240 KAVQLNWNS--PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       240 ~Al~l~P~~--~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                      +++..+|.+  ..+++++|.+|..+|++          ++|+.+|+++|+++|++..+...++.+...+.+
T Consensus        61 ~~l~~~~~~~~~~~~~~Lg~~y~~~g~~----------~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k  121 (122)
T d1nzna_          61 ELLPKGSKEEQRDYVFYLAVGNYRLKEY----------EKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  121 (122)
T ss_dssp             HHTTTSCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCCchHHHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence            999998765  45899999999999999          999999999999999999999999988776553

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.3e-14  Score=123.18  Aligned_cols=118  Identities=16%  Similarity=0.128  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHHHH
Q 010976          156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---------------HDAFYNWAIAISDRAKM  220 (496)
Q Consensus       156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~---------------~~a~~~lg~~~~~~~~~  220 (496)
                      +..+...|..++..|+              |++|+..|+++|.+.|..               ..++.++|.+|..    
T Consensus        13 a~~l~~~G~~~~~~~~--------------~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k----   74 (170)
T d1p5qa1          13 STIVKERGTVYFKEGK--------------YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK----   74 (170)
T ss_dssp             HHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHh----
Confidence            4567789999999999              999999999999997763               3567899999999    


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010976          221 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG  300 (496)
Q Consensus       221 ~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg  300 (496)
                      +|++++|+       ..++++|.++|+++.+++++|.+|..+|++          ++|+..|+++++++|++..+...++
T Consensus        75 ~~~~~~A~-------~~~~~al~~~p~~~~a~~~~g~~~~~~g~~----------~~A~~~~~~al~l~P~n~~~~~~l~  137 (170)
T d1p5qa1          75 LQAFSAAI-------ESCNKALELDSNNEKGLSRRGEAHLAVNDF----------ELARADFQKVLQLYPNNKAAKTQLA  137 (170)
T ss_dssp             TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             hhhccccc-------chhhhhhhccccchhhhHHHHHHHHHhhhH----------HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999999       899999999999999999999999999999          9999999999999999999999999


Q ss_pred             HHHHHcch
Q 010976          301 TVLYGLAE  308 (496)
Q Consensus       301 ~~~~~~g~  308 (496)
                      .+...+++
T Consensus       138 ~~~~~~~~  145 (170)
T d1p5qa1         138 VCQQRIRR  145 (170)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887775

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=5.2e-15  Score=133.45  Aligned_cols=109  Identities=20%  Similarity=0.060  Sum_probs=95.0

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY  208 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~  208 (496)
                      |..++..|+|++|+..|+++|.++|+++.+|+++|.+|..+|+              +++|+.+|++|++++|++..+|+
T Consensus        11 Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~--------------~~~Ai~~~~~al~l~p~~~~a~~   76 (201)
T d2c2la1          11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--------------PEQALADCRRALELDGQSVKAHF   76 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHTTSCTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhh--------------hhhhhHHHHHHHHhCCCcHHHHH
Confidence            4557789999999999999999999999999999999999999              99999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 010976          209 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL  262 (496)
Q Consensus       209 ~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~  262 (496)
                      ++|.+|..    +|++++|+       ..|+++++++|++...+...+..+...
T Consensus        77 ~lg~~~~~----l~~~~~A~-------~~~~~al~l~p~~~~~~~~~~~~~l~~  119 (201)
T d2c2la1          77 FLGQCQLE----MESYDEAI-------ANLQRAYSLAKEQRLNFGDDIPSALRI  119 (201)
T ss_dssp             HHHHHHHH----TTCHHHHH-------HHHHHHHHHHHHTTCCCCSHHHHHHHH
T ss_pred             HHHHHHHH----CCCHHHHH-------HHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            99999999    99999999       777888877776554444444444333

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=5e-14  Score=135.41  Aligned_cols=185  Identities=10%  Similarity=0.052  Sum_probs=147.4

Q ss_pred             hhcHHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCCCCCCCCCcchhh
Q 010976          111 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERN------PEDYDALYNWALVLQESADNVSLDSTSPSKDA  184 (496)
Q Consensus       111 ~~~~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~------P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~  184 (496)
                      ..++++|.++|.++-    ..+..+++|++|+.+|.+++.+.      +....+|.++|.+|..+|+             
T Consensus        30 ~~~~~~Aa~~y~~aa----~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~-------------   92 (290)
T d1qqea_          30 SYKFEEAADLCVQAA----TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN-------------   92 (290)
T ss_dssp             HHHHHHHHHHHHHHH----HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------
T ss_pred             cccHHHHHHHHHHHH----HHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC-------------
Confidence            567889999988763    44667899999999999999974      3345789999999999999             


Q ss_pred             hHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010976          185 LLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA  258 (496)
Q Consensus       185 ~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  258 (496)
                       +++|+++|++++.+.+..      ..++.++|.+|..   ..|++++|++.|++|+..+... ...+....++.++|.+
T Consensus        93 -~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~A~~~~~~A~~l~~~~-~~~~~~~~~~~~la~~  167 (290)
T d1qqea_          93 -SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN---DLHDYAKAIDCYELAGEWYAQD-QSVALSNKCFIKCADL  167 (290)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             -cHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhh---HHHHHHHHHHHHHHHHHHHHhc-CchhhhhhHHHHHHHH
Confidence             999999999999996654      5778899988754   0599999997777777665531 1122346679999999


Q ss_pred             HHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHH
Q 010976          259 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH-------RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQS  331 (496)
Q Consensus       259 l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~-------~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A  331 (496)
                      +..+|++          ++|+..|++++.+.+.+.       ..+.++|.++...++                   +..|
T Consensus       168 ~~~~g~y----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d-------------------~~~A  218 (290)
T d1qqea_         168 KALDGQY----------IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD-------------------AVAA  218 (290)
T ss_dssp             HHHTTCH----------HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC-------------------HHHH
T ss_pred             HHHcChH----------HHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhcc-------------------HHHH
Confidence            9999999          999999999999987764       456788888888887                   7888


Q ss_pred             HHHHHHHHhcCCcHH
Q 010976          332 AIYIAAAHALKPSYS  346 (496)
Q Consensus       332 ~~~~~~a~~l~p~~~  346 (496)
                      ...+.++.+++|...
T Consensus       219 ~~~~~~~~~~~~~~~  233 (290)
T d1qqea_         219 ARTLQEGQSEDPNFA  233 (290)
T ss_dssp             HHHHHGGGCC-----
T ss_pred             HHHHHHHHHhCCCcc
Confidence            999999999998766

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.53  E-value=1.2e-13  Score=120.00  Aligned_cols=117  Identities=17%  Similarity=0.105  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHHHHH
Q 010976          157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL----------------HDAFYNWAIAISDRAKM  220 (496)
Q Consensus       157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~----------------~~a~~~lg~~~~~~~~~  220 (496)
                      ..+...|..++..|+              |.+|+..|++|+.+.+..                ..++.|+|.+|..    
T Consensus        18 ~~~~~~G~~~f~~~~--------------y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~----   79 (153)
T d2fbna1          18 FDIKEEGNEFFKKNE--------------INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK----   79 (153)
T ss_dssp             HHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHH----
Confidence            446678999999999              999999999999986542                2468899999999    


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010976          221 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG  300 (496)
Q Consensus       221 ~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg  300 (496)
                      +|++++|+       ..|+++|+++|.+..+|+++|.+|..+|++          ++|+.+|+++++++|++..+..+++
T Consensus        80 l~~~~~Al-------~~~~~al~~~p~~~ka~~~~g~~~~~lg~~----------~~A~~~~~~al~l~P~n~~~~~~l~  142 (153)
T d2fbna1          80 NKDYPKAI-------DHASKVLKIDKNNVKALYKLGVANMYFGFL----------EEAKENLYKAASLNPNNLDIRNSYE  142 (153)
T ss_dssp             TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             hcccchhh-------hhhhccccccchhhhhhHHhHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999999       899999999999999999999999999999          9999999999999999999999999


Q ss_pred             HHHHHcch
Q 010976          301 TVLYGLAE  308 (496)
Q Consensus       301 ~~~~~~g~  308 (496)
                      .+...+.+
T Consensus       143 ~~~~kl~~  150 (153)
T d2fbna1         143 LCVNKLKE  150 (153)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98877654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.2e-14  Score=117.96  Aligned_cols=110  Identities=12%  Similarity=0.015  Sum_probs=97.9

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC--HHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL--HDAFYN  209 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~--~~a~~~  209 (496)
                      +...+++++|.+.|++++.++|+++++++++|.++...++           .+++++|+..|++++..+|++  ..++++
T Consensus         9 ~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~-----------~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~   77 (122)
T d1nzna_           9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY-----------NDDIRKGIVLLEELLPKGSKEEQRDYVFY   77 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSS-----------HHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc-----------hHHHHHHHHHHHHHHhccCCchHHHHHHH
Confidence            3457899999999999999999999999999999987554           233788999999999998865  469999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 010976          210 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS  263 (496)
Q Consensus       210 lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g  263 (496)
                      +|.+|..    +|++++|+       .+|+++|+++|++..++..++.+..+++
T Consensus        78 Lg~~y~~----~g~~~~A~-------~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          78 LAVGNYR----LKEYEKAL-------KYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             HHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH----HhhhHHHH-------HHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence            9999999    99999999       8999999999999999999998877654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5.5e-14  Score=118.24  Aligned_cols=117  Identities=16%  Similarity=0.134  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010976          156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT  235 (496)
Q Consensus       156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~  235 (496)
                      +..+.++|..++..|+              |++|+.+|++++.++|+++.+++++|.+|..    +|++++|+       
T Consensus         4 a~~~k~~G~~~~~~~~--------------y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~-------   58 (128)
T d1elra_           4 ALKEKELGNDAYKKKD--------------FDTALKHYDKAKELDPTNMTYITNQAAVYFE----KGDYNKCR-------   58 (128)
T ss_dssp             HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHH-------
T ss_pred             HHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCcccHHHHHhHHHHHHH----cCchHHHH-------
Confidence            3457789999999999              9999999999999999999999999999999    99999999       


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 010976          236 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT  301 (496)
Q Consensus       236 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~  301 (496)
                      ..|+++++++|++..++.++|.+|..+|+.   ...++++++|+.+|++++..+++ +.....+..
T Consensus        59 ~~~~~al~l~~~~~~~~~~~a~~~~~lg~~---~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~  120 (128)
T d1elra_          59 ELCEKAIEVGRENREDYRQIAKAYARIGNS---YFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQ  120 (128)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHH
Confidence            788888888888876666666666655555   44555559999999999999875 555554443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.8e-15  Score=153.86  Aligned_cols=178  Identities=13%  Similarity=0.060  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHH----------
Q 010976          140 FAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN----------  209 (496)
Q Consensus       140 ~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~----------  209 (496)
                      +|+++|++|++++|+.+++++++|.++..+++              +++|   |+++|.++|+.+.++..          
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~--------------l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~   66 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQA--------------LQDL---YQKMLVTDLEYALDKKVEQDLWNHAFK   66 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHH--------------HHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHch--------------HHHH---HHHHHHcChhhHHHHhHHHHHHHHHHH
Confidence            69999999999999999999999999999999              8876   89999999987655322          


Q ss_pred             -HHHHHHHH-------------HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchH-------
Q 010976          210 -WAIAISDR-------------AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA-------  268 (496)
Q Consensus       210 -lg~~~~~~-------------~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A-------  268 (496)
                       ....+...             ....+...+|...|++|+..|++++.++|.+..++.++|.++...|++.+|       
T Consensus        67 ~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  146 (497)
T d1ya0a1          67 NQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSS  146 (497)
T ss_dssp             HHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHH
T ss_pred             HHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHH
Confidence             22222211             111334567788888899999999999999999999999998888888776       


Q ss_pred             ---------------HHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHH
Q 010976          269 ---------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAI  333 (496)
Q Consensus       269 ---------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~  333 (496)
                                     ....+++++|+.+|++|++++|++..+|++||.++...|+                   +.+|..
T Consensus       147 l~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~-------------------~~~A~~  207 (497)
T d1ya0a1         147 CSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD-------------------HLTTIF  207 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC-------------------HHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCC-------------------HHHHHH
Confidence                           2367888999999999999999999999999999999999                   889999


Q ss_pred             HHHHHHhcCCcHHHHHHHHH
Q 010976          334 YIAAAHALKPSYSVYSSALR  353 (496)
Q Consensus       334 ~~~~a~~l~p~~~~y~~al~  353 (496)
                      +|.+++.++|.++....+|.
T Consensus       208 ~y~ral~~~~~~~~a~~nL~  227 (497)
T d1ya0a1         208 YYCRSIAVKFPFPAASTNLQ  227 (497)
T ss_dssp             HHHHHHSSSBCCHHHHHHHH
T ss_pred             HHHHHHhCCCCCHHHHHHHH
Confidence            99999999999986655554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.49  E-value=1.6e-13  Score=120.94  Aligned_cols=115  Identities=18%  Similarity=0.141  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHHHHcC
Q 010976          159 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL----------------CPTLHDAFYNWAIAISDRAKMRG  222 (496)
Q Consensus       159 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l----------------~P~~~~a~~~lg~~~~~~~~~~g  222 (496)
                      +...|..++..|+              |.+|+..|++++.+                +|....++.++|.+|..    +|
T Consensus        30 ~~~~~~~~~~~~~--------------y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----~~   91 (169)
T d1ihga1          30 LKNIGNTFFKSQN--------------WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK----MS   91 (169)
T ss_dssp             HHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH----TT
T ss_pred             HHHHHHHHHHcCC--------------HHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHh----hc
Confidence            5678999999999              99999999999865                56677889999999999    99


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010976          223 RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV  302 (496)
Q Consensus       223 ~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~  302 (496)
                      ++++|+       ..|.++|+++|+++.+|+++|.+|..+|++          ++|+..|+++++++|++..++..|+.+
T Consensus        92 ~~~~Ai-------~~~~~al~~~p~~~~a~~~~g~~~~~l~~~----------~~A~~~~~~al~l~p~n~~~~~~l~~~  154 (169)
T d1ihga1          92 DWQGAV-------DSCLEALEIDPSNTKALYRRAQGWQGLKEY----------DQALADLKKAQEIAPEDKAIQAELLKV  154 (169)
T ss_dssp             CHHHHH-------HHHHHHHTTCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccchhh-------hhhhhhhhhhhhhhhHHHhHHHHHHHccCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999       899999999999999999999999999999          999999999999999999999999999


Q ss_pred             HHHcch
Q 010976          303 LYGLAE  308 (496)
Q Consensus       303 ~~~~g~  308 (496)
                      ...+..
T Consensus       155 ~~~l~~  160 (169)
T d1ihga1         155 KQKIKA  160 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877765

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.49  E-value=6e-13  Score=117.23  Aligned_cols=118  Identities=16%  Similarity=0.123  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHHHHH
Q 010976          156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---------------LHDAFYNWAIAISDRAKM  220 (496)
Q Consensus       156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~---------------~~~a~~~lg~~~~~~~~~  220 (496)
                      +..+...|..++..|+              |.+|+..|++|+.+.+.               ...++.|+|.||..    
T Consensus        15 a~~~~e~G~~~~~~~~--------------~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~----   76 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGK--------------YVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK----   76 (168)
T ss_dssp             HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHH----
Confidence            4567889999999999              99999999999987443               23468899999999    


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010976          221 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG  300 (496)
Q Consensus       221 ~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg  300 (496)
                      +|++.+|+       ..|++++.++|++..+++++|.+|..+|++          ++|+..|+++++++|++..++..++
T Consensus        77 l~~~~~Ai-------~~~~~al~l~p~~~~a~~~~~~~~~~l~~~----------~~A~~~~~~al~l~P~n~~~~~~l~  139 (168)
T d1kt1a1          77 LREYTKAV-------ECCDKALGLDSANEKGLYRRGEAQLLMNEF----------ESAKGDFEKVLEVNPQNKAARLQIF  139 (168)
T ss_dssp             TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             hhhcccch-------hhhhhhhhcccchHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999999       899999999999999999999999999999          9999999999999999999999999


Q ss_pred             HHHHHcch
Q 010976          301 TVLYGLAE  308 (496)
Q Consensus       301 ~~~~~~g~  308 (496)
                      .+...++.
T Consensus       140 ~~~~~~~~  147 (168)
T d1kt1a1         140 MCQKKAKE  147 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99877765

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.3e-13  Score=119.19  Aligned_cols=112  Identities=13%  Similarity=0.069  Sum_probs=103.1

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHH
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPED---------------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKY  193 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~---------------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  193 (496)
                      +..++..|+|++|+..|+++|...|..               ..++.++|.+|..+|+              +++|+.++
T Consensus        20 G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~--------------~~~A~~~~   85 (170)
T d1p5qa1          20 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA--------------FSAAIESC   85 (170)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhh--------------cccccchh
Confidence            445678899999999999999998754               3567899999999999              99999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          194 DEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       194 ~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      +++|.++|++..+++++|.+|..    +|++++|+       ..|+++++++|+++.+...++.+....++.
T Consensus        86 ~~al~~~p~~~~a~~~~g~~~~~----~g~~~~A~-------~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  146 (170)
T d1p5qa1          86 NKALELDSNNEKGLSRRGEAHLA----VNDFELAR-------ADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  146 (170)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccchhhhHHHHHHHHH----hhhHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999    99999999       899999999999999999999998887776

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.49  E-value=1.5e-13  Score=112.64  Aligned_cols=95  Identities=14%  Similarity=0.151  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010976          157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK  236 (496)
Q Consensus       157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~  236 (496)
                      +.++.+|.++...|+              +++|+..|++++.++|+++.+|+++|.++..    .|++++|+       .
T Consensus        17 ~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~~~~~~A~-------~   71 (112)
T d1hxia_          17 ENPMEEGLSMLKLAN--------------LAEAALAFEAVCQKEPEREEAWRSLGLTQAE----NEKDGLAI-------I   71 (112)
T ss_dssp             SCHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH-------H
T ss_pred             HHHHHHHHHHHHHhh--------------hHHHHHHHhhhcccccccchhhhhhhhhhhh----hhhHHHhh-------c
Confidence            346789999999999              9999999999999999999999999999999    99999999       8


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHH
Q 010976          237 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI  286 (496)
Q Consensus       237 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al  286 (496)
                      +|+++++++|++..+++++|.+|..+|++          ++|++.|++.|
T Consensus        72 ~~~~al~~~p~~~~a~~~la~~y~~~g~~----------~~A~~~l~~~l  111 (112)
T d1hxia_          72 ALNHARMLDPKDIAVHAALAVSHTNEHNA----------NAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
T ss_pred             ccccccccccccccchHHHHHHHHHCCCH----------HHHHHHHHHHh
Confidence            99999999999999999999999999999          99999999976

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.46  E-value=4.3e-13  Score=116.32  Aligned_cols=110  Identities=20%  Similarity=0.194  Sum_probs=99.5

Q ss_pred             hhhHhhccHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHH
Q 010976          130 EGRSRQRILTFAAKRYANAIERNPED----------------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKY  193 (496)
Q Consensus       130 ~~~~~~g~~~~Ai~~~~~al~~~P~~----------------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  193 (496)
                      ..+++.|+|.+|+..|++++.+.+..                ..++.++|.+|..+|+              +++|+.+|
T Consensus        25 ~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~--------------~~~Al~~~   90 (153)
T d2fbna1          25 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD--------------YPKAIDHA   90 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcc--------------cchhhhhh
Confidence            34667899999999999999877543                2467899999999999              99999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 010976          194 DEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA  264 (496)
Q Consensus       194 ~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~  264 (496)
                      +++|+++|++..+|+++|.+|..    +|++++|+       .+|+++++++|++..+...++.+..++++
T Consensus        91 ~~al~~~p~~~ka~~~~g~~~~~----lg~~~~A~-------~~~~~al~l~P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1          91 SKVLKIDKNNVKALYKLGVANMY----FGFLEEAK-------ENLYKAASLNPNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             hccccccchhhhhhHHhHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999    99999999       89999999999999999999998877654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.44  E-value=3.8e-13  Score=118.54  Aligned_cols=109  Identities=17%  Similarity=0.145  Sum_probs=96.2

Q ss_pred             hHhhccHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIE----------------RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDE  195 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~----------------~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  195 (496)
                      ++..|+|.+|+..|.++|.                ++|....++.++|.+|.++|+              +++|+..|++
T Consensus        37 ~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~--------------~~~Ai~~~~~  102 (169)
T d1ihga1          37 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD--------------WQGAVDSCLE  102 (169)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcc--------------cchhhhhhhh
Confidence            4445666666666666654                457778899999999999999              9999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          196 ATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       196 Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      +|+++|+++.+|+++|.+|..    +|++++|+       ..|+++++++|++..++..++.+...+...
T Consensus       103 al~~~p~~~~a~~~~g~~~~~----l~~~~~A~-------~~~~~al~l~p~n~~~~~~l~~~~~~l~~~  161 (169)
T d1ihga1         103 ALEIDPSNTKALYRRAQGWQG----LKEYDQAL-------ADLKKAQEIAPEDKAIQAELLKVKQKIKAQ  161 (169)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhHHHhHHHHHHH----ccCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999    99999999       899999999999999999999998877666

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.44  E-value=1.3e-12  Score=114.91  Aligned_cols=112  Identities=14%  Similarity=0.087  Sum_probs=101.0

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHH
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPED---------------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKY  193 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~---------------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  193 (496)
                      +..+++.|+|.+|+..|.++|...|..               ..++.++|.+|..+++              +++|+..|
T Consensus        22 G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~--------------~~~Ai~~~   87 (168)
T d1kt1a1          22 GTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE--------------YTKAVECC   87 (168)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhh--------------cccchhhh
Confidence            444667899999999999999865432               3567899999999999              99999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976          194 DEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  265 (496)
Q Consensus       194 ~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  265 (496)
                      ++++.++|++..+++++|.+|..    +|++++|+       .+|.++++++|++..++..++.+....+.+
T Consensus        88 ~~al~l~p~~~~a~~~~~~~~~~----l~~~~~A~-------~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  148 (168)
T d1kt1a1          88 DKALGLDSANEKGLYRRGEAQLL----MNEFESAK-------GDFEKVLEVNPQNKAARLQIFMCQKKAKEH  148 (168)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhcccchHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence            99999999999999999999999    99999999       899999999999999999999998887766

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.43  E-value=7.8e-13  Score=108.32  Aligned_cols=94  Identities=15%  Similarity=-0.007  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH
Q 010976          206 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA  285 (496)
Q Consensus       206 a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A  285 (496)
                      .++++|.++..    .|++.+|+       ..|++++..+|+++.+|+++|.++..+|++          ++|+.+|+++
T Consensus        18 ~~~~~g~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~a~~~lg~~~~~~~~~----------~~A~~~~~~a   76 (112)
T d1hxia_          18 NPMEEGLSMLK----LANLAEAA-------LAFEAVCQKEPEREEAWRSLGLTQAENEKD----------GLAIIALNHA   76 (112)
T ss_dssp             CHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHH
T ss_pred             HHHHHHHHHHH----HhhhHHHH-------HHHhhhcccccccchhhhhhhhhhhhhhhH----------HHhhcccccc
Confidence            46889999999    99999999       899999999999999999999999999999          9999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHH
Q 010976          286 IQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAH  339 (496)
Q Consensus       286 l~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~  339 (496)
                      ++++|++..++++||.+|..+|+                   +.+|..++++.+
T Consensus        77 l~~~p~~~~a~~~la~~y~~~g~-------------------~~~A~~~l~~~l  111 (112)
T d1hxia_          77 RMLDPKDIAVHAALAVSHTNEHN-------------------ANAALASLRAWL  111 (112)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHH
T ss_pred             cccccccccchHHHHHHHHHCCC-------------------HHHHHHHHHHHh
Confidence            99999999999999999999999                   888998888765

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=8.5e-13  Score=110.78  Aligned_cols=113  Identities=12%  Similarity=0.065  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHH
Q 010976          204 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFR  283 (496)
Q Consensus       204 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~  283 (496)
                      +..+.++|+.++.    .|+|++|+       .+|+++|+++|+++.+++++|.+|..+|++          ++|+..|+
T Consensus         4 a~~~k~~G~~~~~----~~~y~~Ai-------~~y~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~   62 (128)
T d1elra_           4 ALKEKELGNDAYK----KKDFDTAL-------KHYDKAKELDPTNMTYITNQAAVYFEKGDY----------NKCRELCE   62 (128)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHH
T ss_pred             HHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCcccHHHHHhHHHHHHHcCch----------HHHHHHHH
Confidence            3457789999999    99999999       899999999999999999999999999999          99999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHH
Q 010976          284 AAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS  349 (496)
Q Consensus       284 ~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~  349 (496)
                      +||+++|++..++.++|.+|..+|....+...            |..|+.+|.+++..+++.....
T Consensus        63 ~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~------------~~~A~~~~~kal~~~~~~~~~~  116 (128)
T d1elra_          63 KAIEVGRENREDYRQIAKAYARIGNSYFKEEK------------YKDAIHFYNKSLAEHRTPDVLK  116 (128)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHhCcccHHHHHHHHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHhcCCCHHHHH
Confidence            99999999988777777777777765555444            8999999999999988766443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=8.5e-13  Score=136.64  Aligned_cols=137  Identities=16%  Similarity=0.117  Sum_probs=97.6

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  214 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~  214 (496)
                      .+.|+.|+..|.+++.++|++..++.++|.++...++              +++|+..+++++.++|  ..+++++|.++
T Consensus        99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~--------------~~~A~~~~~~al~~~~--~~~~~~LG~l~  162 (497)
T d1ya0a1          99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTH--------------TSAIVKPQSSSCSYIC--QHCLVHLGDIA  162 (497)
T ss_dssp             HHHHHHHHHHHTC---------------------------------------------CCHHHHHHH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCC--------------HHHHHHHHHHHhCCCH--HHHHHHHHHHH
Confidence            4677888888888888999999999999999999999              9999999999998876  47899999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHH
Q 010976          215 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR  294 (496)
Q Consensus       215 ~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~  294 (496)
                      ..    +|++++|+       .+|++|++++|++..+|++||.++...|++          .+|+.+|.+||.++|.++.
T Consensus       163 ~~----~~~~~~A~-------~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~----------~~A~~~y~ral~~~~~~~~  221 (497)
T d1ya0a1         163 RY----RNQTSQAE-------SYYRHAAQLVPSNGQPYNQLAILASSKGDH----------LTTIFYYCRSIAVKFPFPA  221 (497)
T ss_dssp             HH----TTCHHHHH-------HHHHHHHHHCTTBSHHHHHHHHHHHHTTCH----------HHHHHHHHHHHSSSBCCHH
T ss_pred             HH----cccHHHHH-------HHHHHHHHHCCCchHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhCCCCCHH
Confidence            99    99999999       899999999999999999999999999999          9999999999999999999


Q ss_pred             HHHHHHHHHHHcch
Q 010976          295 AIYNLGTVLYGLAE  308 (496)
Q Consensus       295 a~~~lg~~~~~~g~  308 (496)
                      ++.||+.++....+
T Consensus       222 a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         222 ASTNLQKALSKALE  235 (497)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999876653

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=3.9e-12  Score=121.85  Aligned_cols=190  Identities=15%  Similarity=0.059  Sum_probs=144.2

Q ss_pred             CChhhhhhcHHHHHHHHHHhhccc----------------hhhhHhhccHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 010976          105 NTPHQLAEQNNAAMELINSVTGVD----------------EEGRSRQRILTFAAKRYANAIERNPED------YDALYNW  162 (496)
Q Consensus       105 ~~~~~~~~~~~~A~~~~~~~l~~~----------------~~~~~~~g~~~~Ai~~~~~al~~~P~~------~~a~~~l  162 (496)
                      +..+...+++++|+..|.+++...                +.++.++|++++|+.+|++++.+.+..      ..++.++
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            345667888999999998887753                455667899999999999999987655      6788899


Q ss_pred             HHHHHH-hcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010976          163 ALVLQE-SADNVSLDSTSPSKDALLEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT  235 (496)
Q Consensus       163 g~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~  235 (496)
                      |.+|.. .++              +++|+.+|++++++.+.      ...++.++|.++..    +|++++|+       
T Consensus       124 ~~~~~~~~~~--------------~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~----~g~y~~A~-------  178 (290)
T d1qqea_         124 GEILENDLHD--------------YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL----DGQYIEAS-------  178 (290)
T ss_dssp             HHHHHHTTCC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHH-------
T ss_pred             HHhHhhHHHH--------------HHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH----cChHHHHH-------
Confidence            998865 589              99999999999988433      35678999999999    99999999       


Q ss_pred             HHHHHHHhcCCCCH-------HHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHH-----HHHHHHHH
Q 010976          236 KNYEKAVQLNWNSP-------QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA-----IYNLGTVL  303 (496)
Q Consensus       236 ~~~~~Al~l~P~~~-------~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a-----~~~lg~~~  303 (496)
                      ..|++++...+.+.       ..+.+.|.++...|++          ..|...|+++++++|.+...     +..+..++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~----------~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~  248 (290)
T d1qqea_         179 DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA----------VAAARTLQEGQSEDPNFADSRESNFLKSLIDAV  248 (290)
T ss_dssp             HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH----------HHHHHHHHGGGCC---------HHHHHHHHHHH
T ss_pred             HHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHhCCCccchHHHHHHHHHHHHH
Confidence            77788887776653       4577889999999999          99999999999999876543     34444444


Q ss_pred             HHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976          304 YGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       304 ~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  346 (496)
                      .....                 +.+.+++.+|.++.++||-..
T Consensus       249 ~~~d~-----------------e~~~eai~~y~~~~~lD~~~~  274 (290)
T d1qqea_         249 NEGDS-----------------EQLSEHCKEFDNFMRLDKWKI  274 (290)
T ss_dssp             HTTCT-----------------TTHHHHHHHHTTSSCCCHHHH
T ss_pred             HhcCH-----------------HHHHHHHHHHHHHhhcCHHHH
Confidence            33211                 117788888888888876443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.33  E-value=9.3e-12  Score=107.95  Aligned_cols=109  Identities=18%  Similarity=0.159  Sum_probs=95.3

Q ss_pred             HHHHHHH--HHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHHHHHc
Q 010976          156 YDALYNW--ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------------HDAFYNWAIAISDRAKMR  221 (496)
Q Consensus       156 ~~a~~~l--g~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~------------~~a~~~lg~~~~~~~~~~  221 (496)
                      .+++..+  |..++..|+              |++|+..|+++|+++|+.            +.+|+++|.+|..    +
T Consensus         7 a~a~~~l~~g~~~~~~g~--------------y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~----l   68 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGE--------------YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG----L   68 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH----T
T ss_pred             HHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHH----c
Confidence            3455555  788889999              999999999999998874            4689999999999    9


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976          222 GRTKEAEELWKQATKNYEKAVQLNWNS----PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  292 (496)
Q Consensus       222 g~~~eA~~~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~  292 (496)
                      |++++|++.+++|+..+.+....++..    ..+++++|.+|..+|++          ++|+..|++|+++.|+.
T Consensus        69 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~----------eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          69 RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRG----------AEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHC
T ss_pred             CccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHH----------HHHHHHHHHHHHhhHHh
Confidence            999999999999999999988887764    44789999999999999          99999999999997644

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=2.3e-11  Score=116.75  Aligned_cols=199  Identities=14%  Similarity=-0.026  Sum_probs=141.3

Q ss_pred             hhhhhcHHHHHHHHHHhhccc---------------hhhhHhhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH
Q 010976          108 HQLAEQNNAAMELINSVTGVD---------------EEGRSRQRILTFAAKRYANAIERNPED------YDALYNWALVL  166 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~l~~~---------------~~~~~~~g~~~~Ai~~~~~al~~~P~~------~~a~~~lg~~~  166 (496)
                      ....|++++|+.++.+++...               +..+..+|++++|+..|++++++.+..      ..++.+++.++
T Consensus        22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  101 (366)
T d1hz4a_          22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL  101 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            356789999999999887654               234567899999999999999876433      46788899999


Q ss_pred             HHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-----
Q 010976          167 QESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQ-----  233 (496)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~--------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~-----  233 (496)
                      ...++              +..|+..+.+++.+.+.        ....+..+|.++..    .|+++.+...+.+     
T Consensus       102 ~~~~~--------------~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~a~~~~~~~~~~~  163 (366)
T d1hz4a_         102 FAQGF--------------LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA----WARLDEAEASARSGIEVL  163 (366)
T ss_dssp             HHTTC--------------HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHH--------------HHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHH----hcchhhhHHHHHHHHHHh
Confidence            99999              88888888888876321        23466778888888    8888887766533     


Q ss_pred             ---------------------------HHHHHHHHHhcCC-------CCHHHHHHHHHHHHHccCcchH-----------
Q 010976          234 ---------------------------ATKNYEKAVQLNW-------NSPQALNNWGLALQELSAIVPA-----------  268 (496)
Q Consensus       234 ---------------------------A~~~~~~Al~l~P-------~~~~a~~~lg~~l~~~g~~~~A-----------  268 (496)
                                                 +...+.++..+..       ....++..+|.++...|++++|           
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  243 (366)
T d1hz4a_         164 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE  243 (366)
T ss_dssp             TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC
T ss_pred             hhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence                                       2222232222211       1223344455555555555443           


Q ss_pred             -----------------HHhhhhHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcH
Q 010976          269 -----------------REKQTIVRTAISKFRAAIQL------QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN  325 (496)
Q Consensus       269 -----------------~~~~~~~~~Ai~~~~~Al~l------~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~  325 (496)
                                       +...|++++|+..|++++..      .|....++.++|.+|..+|+                 
T Consensus       244 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------------  306 (366)
T d1hz4a_         244 FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR-----------------  306 (366)
T ss_dssp             CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----------------
T ss_pred             cccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCC-----------------
Confidence                             11345559999999999854      46667899999999999999                 


Q ss_pred             HHHHHHHHHHHHHHhcCC
Q 010976          326 ELYSQSAIYIAAAHALKP  343 (496)
Q Consensus       326 ~~~~~A~~~~~~a~~l~p  343 (496)
                        +.+|..++++|+++.+
T Consensus       307 --~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         307 --KSDAQRVLLDALKLAN  322 (366)
T ss_dssp             --HHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHhh
Confidence              8889999999887654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=1.5e-10  Score=110.86  Aligned_cols=122  Identities=11%  Similarity=-0.058  Sum_probs=97.5

Q ss_pred             hhhhHhhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC
Q 010976          129 EEGRSRQRILTFAAKRYANAIERNPED-----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL  203 (496)
Q Consensus       129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~-----~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~  203 (496)
                      +......|++++|+.+|++++...|++     ..++..+|.+|..+|+              +++|+..|++++++.+..
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~--------------~~~A~~~~~~a~~~~~~~   84 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGE--------------LTRSLALMQQTEQMARQH   84 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHHHhh
Confidence            444667899999999999999999987     4588999999999999              999999999999985542


Q ss_pred             ------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHccCcchH
Q 010976          204 ------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ-LNWNSPQALNNWGLALQELSAIVPA  268 (496)
Q Consensus       204 ------~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~-l~P~~~~a~~~lg~~l~~~g~~~~A  268 (496)
                            ..++.+++.++..    .|++..+...+.+++..+..... ..+....++..+|.++...|+++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a  152 (366)
T d1hz4a_          85 DVWHYALWSLIQQSEILFA----QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA  152 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhh
Confidence                  4577889999999    99999999877777666554321 1223445677888888888887665

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.2e-11  Score=95.38  Aligned_cols=90  Identities=14%  Similarity=0.124  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHH
Q 010976          204 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFR  283 (496)
Q Consensus       204 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~  283 (496)
                      ++-.+++|.++.+    .|+|.+|+..|++|+..........++...++++||.++.++|++          ++|+..|+
T Consensus         5 addc~~lG~~~~~----~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~----------~~A~~~y~   70 (95)
T d1tjca_           5 AEDSFELGKVAYT----EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL----------DKALLLTK   70 (95)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH----------HHHHHHHH
T ss_pred             HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCCh----------HHHHHHHH
Confidence            5667899999999    999999996555555555443333445588999999999999999          99999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHcc
Q 010976          284 AAIQLQFDFHRAIYNLGTVLYGLA  307 (496)
Q Consensus       284 ~Al~l~P~~~~a~~~lg~~~~~~g  307 (496)
                      ++|+++|+++.+++|++.+...++
T Consensus        71 ~aL~l~P~~~~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          71 KLLELDPEHQRANGNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCcCCHHHHHHHHHHHHHhC
Confidence            999999999999999998766543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=7.1e-11  Score=93.31  Aligned_cols=84  Identities=14%  Similarity=0.045  Sum_probs=75.7

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHHHcCCHHHH
Q 010976          155 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-------LHDAFYNWAIAISDRAKMRGRTKEA  227 (496)
Q Consensus       155 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~-------~~~a~~~lg~~~~~~~~~~g~~~eA  227 (496)
                      .++-.+.+|.++++.|+              |.+|+..|++|+++.|.       ...++++||.++..    +|++++|
T Consensus         4 saddc~~lG~~~~~~g~--------------y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~----~g~~~~A   65 (95)
T d1tjca_           4 TAEDSFELGKVAYTEAD--------------YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----QGDLDKA   65 (95)
T ss_dssp             CHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH----TTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh----cCChHHH
Confidence            35668899999999999              99999999999999654       36899999999999    9999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 010976          228 EELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS  263 (496)
Q Consensus       228 ~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g  263 (496)
                      +       ..|+++|+++|+++.+++|++.+...++
T Consensus        66 ~-------~~y~~aL~l~P~~~~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          66 L-------LLTKKLLELDPEHQRANGNLKYFEYIMA   94 (95)
T ss_dssp             H-------HHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             H-------HHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            9       8999999999999999999998776554

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=7.8e-10  Score=106.31  Aligned_cols=156  Identities=12%  Similarity=0.026  Sum_probs=138.9

Q ss_pred             hccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH-HHHHHHHH
Q 010976          135 QRILTFAAKRYANAIER-NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH-DAFYNWAI  212 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~-~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~-~a~~~lg~  212 (496)
                      .+..++|...|+++++. .|.+...|..++.++..+|+              +++|...|++++...|.+. .+|..++.
T Consensus        77 ~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~--------------~~~a~~i~~~~l~~~~~~~~~~w~~~~~  142 (308)
T d2onda1          77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK--------------YEKVHSIYNRLLAIEDIDPTLVYIQYMK  142 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHTSSSSCTHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccc--------------HHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence            35678999999999974 79999999999999999999              9999999999999999764 57889999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976          213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE-LSAIVPAREKQTIVRTAISKFRAAIQLQFD  291 (496)
Q Consensus       213 ~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~  291 (496)
                      ....    .|+++.|.       ..|.++++..|.+...+...+..... .|+.          +.|...|++++...|+
T Consensus       143 ~~~~----~~~~~~ar-------~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~----------~~a~~i~e~~l~~~p~  201 (308)
T d2onda1         143 FARR----AEGIKSGR-------MIFKKAREDARTRHHVYVTAALMEYYCSKDK----------SVAFKIFELGLKKYGD  201 (308)
T ss_dssp             HHHH----HHCHHHHH-------HHHHHHHTSTTCCTHHHHHHHHHHHHTSCCH----------HHHHHHHHHHHHHHTT
T ss_pred             HHHH----cCChHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHhccCH----------HHHHHHHHHHHHhhhh
Confidence            8888    89988888       89999999999999999999987655 4677          9999999999999999


Q ss_pred             CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976          292 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  344 (496)
Q Consensus       292 ~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~  344 (496)
                      ++..|..++..+...|+                   +..|..+|+++++..|.
T Consensus       202 ~~~~w~~y~~~~~~~g~-------------------~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         202 IPEYVLAYIDYLSHLNE-------------------DNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             CHHHHHHHHHHHHTTCC-------------------HHHHHHHHHHHHHSSSS
T ss_pred             hHHHHHHHHHHHHHcCC-------------------hHHHHHHHHHHHHhCCC
Confidence            99999999999999998                   77888899999886653

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.17  E-value=5.2e-11  Score=103.10  Aligned_cols=115  Identities=18%  Similarity=0.073  Sum_probs=89.5

Q ss_pred             hhHhhccHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHH
Q 010976          131 GRSRQRILTFAAKRYANAIERNPED------------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR  198 (496)
Q Consensus       131 ~~~~~g~~~~Ai~~~~~al~~~P~~------------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~  198 (496)
                      ..+..|+|++|+..|+++|+++|+.            ..+|.++|.+|..+|+              +++|+..|++++.
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~--------------~~~A~~~~~~al~   83 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS--------------FDEALHSADKALH   83 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCc--------------cchhhHhhhhhhh
Confidence            3556799999999999999998865            4689999999999999              9999999999998


Q ss_pred             hCCC-----------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 010976          199 LCPT-----------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS  263 (496)
Q Consensus       199 l~P~-----------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g  263 (496)
                      +.|.           ...+++++|.+|..    +|++++|++.|++|++.+.+.-.-.+........++..+.++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~a~~~~g~~~~~----lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~~l~~lg  155 (156)
T d2hr2a1          84 YFNRRGELNQDEGKLWISAVYSRALALDG----LGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQLG  155 (156)
T ss_dssp             HHHHHCCTTSTHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccchhHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHHHHHHcC
Confidence            8542           34578999999999    9999999976666666665443333444555555555555544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=1.3e-09  Score=104.82  Aligned_cols=185  Identities=8%  Similarity=-0.045  Sum_probs=151.6

Q ss_pred             hhhhcHHHHHHHHHHhhccc-----------hhhhHhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCCCCC
Q 010976          109 QLAEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERNPEDY-DALYNWALVLQESADNVSLD  176 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~l~~~-----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~-~a~~~lg~~~~~~~~~~~~~  176 (496)
                      ...+..+++...+.+++...           ......+|+++.|...|++++...|.+. .+|..++......++     
T Consensus        75 ~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~-----  149 (308)
T d2onda1          75 NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-----  149 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC-----
T ss_pred             hcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC-----
Confidence            34566788889999988642           2223457999999999999999999875 578999999999999     


Q ss_pred             CCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010976          177 STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG  256 (496)
Q Consensus       177 ~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  256 (496)
                               ++.|...|+++++..|.+...+...+.....   ..|+.+.|.       ..|++++..+|+++..|..++
T Consensus       150 ---------~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~---~~~~~~~a~-------~i~e~~l~~~p~~~~~w~~y~  210 (308)
T d2onda1         150 ---------IKSGRMIFKKAREDARTRHHVYVTAALMEYY---CSKDKSVAF-------KIFELGLKKYGDIPEYVLAYI  210 (308)
T ss_dssp             ---------HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH---TSCCHHHHH-------HHHHHHHHHHTTCHHHHHHHH
T ss_pred             ---------hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---hccCHHHHH-------HHHHHHHHhhhhhHHHHHHHH
Confidence                     9999999999999999999999998876543   158888888       788899999999999999999


Q ss_pred             HHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHH
Q 010976          257 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF----HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSA  332 (496)
Q Consensus       257 ~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~----~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~  332 (496)
                      ..+...|++          +.|...|++|+...|.+    ...|..........|+                   ...+.
T Consensus       211 ~~~~~~g~~----------~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~-------------------~~~~~  261 (308)
T d2onda1         211 DYLSHLNED----------NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD-------------------LASIL  261 (308)
T ss_dssp             HHHHTTCCH----------HHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC-------------------HHHHH
T ss_pred             HHHHHcCCh----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCC-------------------HHHHH
Confidence            999999999          99999999999987754    3466666666667776                   55666


Q ss_pred             HHHHHHHhcCCcHH
Q 010976          333 IYIAAAHALKPSYS  346 (496)
Q Consensus       333 ~~~~~a~~l~p~~~  346 (496)
                      .+++++.++-|...
T Consensus       262 ~~~~r~~~~~~~~~  275 (308)
T d2onda1         262 KVEKRRFTAFREEY  275 (308)
T ss_dssp             HHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHCcccc
Confidence            67777777666554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.06  E-value=1.3e-10  Score=109.61  Aligned_cols=131  Identities=11%  Similarity=-0.047  Sum_probs=112.8

Q ss_pred             hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976          132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  211 (496)
Q Consensus       132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg  211 (496)
                      ..+.|++++|+..|+++++.+|+++.++..+|.+|...|+              +++|++.|+++++++|++..++..++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~--------------~e~A~~~l~~a~~l~P~~~~~~~~l~   71 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGD--------------FERADEQLMQSIKLFPEYLPGASQLR   71 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            3457999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcC
Q 010976          212 IAISDRAKMRGRTKEAEELWKQATKNYEKAV-QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF  290 (496)
Q Consensus       212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al-~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P  290 (496)
                      .++..    .+...++.       ..+.+.. ..+|.....+...+.++...|++          ++|+..+++++++.|
T Consensus        72 ~ll~a----~~~~~~a~-------~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~----------~~A~~~~~~a~e~~p  130 (264)
T d1zbpa1          72 HLVKA----AQARKDFA-------QGAATAKVLGENEELTKSLVSFNLSMVSQDY----------EQVSELALQIEELRQ  130 (264)
T ss_dssp             HHHHH----HHHHHHHT-------TSCCCEECCCSCHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCC
T ss_pred             HHHHh----ccccHHHH-------HHhhhhhcccCchHHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHhcCC
Confidence            98877    55555554       4444333 33566778888899999999999          999999999999999


Q ss_pred             CCHHHHH
Q 010976          291 DFHRAIY  297 (496)
Q Consensus       291 ~~~~a~~  297 (496)
                      +.+..+.
T Consensus       131 ~~~~~~~  137 (264)
T d1zbpa1         131 EKGFLAN  137 (264)
T ss_dssp             CCCEEET
T ss_pred             CCCcccc
Confidence            8766543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.86  E-value=1.2e-08  Score=90.09  Aligned_cols=97  Identities=9%  Similarity=-0.000  Sum_probs=84.7

Q ss_pred             HhhccHHHHHHHHHHHHHhCCC----------------------CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHH
Q 010976          133 SRQRILTFAAKRYANAIERNPE----------------------DYDALYNWALVLQESADNVSLDSTSPSKDALLEEAC  190 (496)
Q Consensus       133 ~~~g~~~~Ai~~~~~al~~~P~----------------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~  190 (496)
                      ...|++++|+..|.+|+.+.+.                      ...++.+++.++..+|+              +++|+
T Consensus        22 ~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~--------------~~~Al   87 (179)
T d2ff4a2          22 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGR--------------ASAVI   87 (179)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHH
T ss_pred             HHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------chHHH
Confidence            3456666666666666666543                      34788999999999999              99999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010976          191 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN  247 (496)
Q Consensus       191 ~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~  247 (496)
                      .+++++++++|.+..+|.+++.+|..    +|++.+|++.|+++...+.+-+.++|.
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~----~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYL----SDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            99999999999999999999999999    999999999999999999999999996

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.86  E-value=1.3e-09  Score=102.50  Aligned_cols=123  Identities=11%  Similarity=0.014  Sum_probs=100.6

Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 010976          184 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS  263 (496)
Q Consensus       184 ~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g  263 (496)
                      |++++|+..|+++++.+|++..++.++|.+|..    .|++++|+       ..|+++++++|++..++.+++.++...+
T Consensus        10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~----~G~~e~A~-------~~l~~a~~l~P~~~~~~~~l~~ll~a~~   78 (264)
T d1zbpa1          10 GQLQQALELLIEAIKASPKDASLRSSFIELLCI----DGDFERAD-------EQLMQSIKLFPEYLPGASQLRHLVKAAQ   78 (264)
T ss_dssp             TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            449999999999999999999999999999999    99999999       8899999999999999999999888777


Q ss_pred             CcchHHHhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 010976          264 AIVPAREKQTIVRTAISKFRAAIQL-QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK  342 (496)
Q Consensus       264 ~~~~A~~~~~~~~~Ai~~~~~Al~l-~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~  342 (496)
                      ..          +++...+.+...+ +|.....+...+.++...|+                   +.+|...+.++.++.
T Consensus        79 ~~----------~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd-------------------~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          79 AR----------KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQD-------------------YEQVSELALQIEELR  129 (264)
T ss_dssp             HH----------HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTC-------------------HHHHHHHHHHHHHHC
T ss_pred             cc----------HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCC-------------------HHHHHHHHHHHHhcC
Confidence            76          6665555544333 56666777888888888888                   778888888877776


Q ss_pred             CcHH
Q 010976          343 PSYS  346 (496)
Q Consensus       343 p~~~  346 (496)
                      |+.+
T Consensus       130 p~~~  133 (264)
T d1zbpa1         130 QEKG  133 (264)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            6443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.85  E-value=7.7e-08  Score=89.43  Aligned_cols=78  Identities=18%  Similarity=0.188  Sum_probs=52.9

Q ss_pred             CCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcH
Q 010976          246 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN  325 (496)
Q Consensus       246 P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~  325 (496)
                      +.++.+++++|.+|.....      ...++++|+.+|+++.+.  +++.++++||.+|.. |.-     ...+       
T Consensus       175 ~g~~~A~~~lg~~y~~g~~------~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~-G~g-----~~~n-------  233 (265)
T d1ouva_         175 LKDSPGCFNAGNMYHHGEG------ATKNFKEALARYSKACEL--ENGGGCFNLGAMQYN-GEG-----VTRN-------  233 (265)
T ss_dssp             TTCHHHHHHHHHHHHHTCS------SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHT-TSS-----SSCC-------
T ss_pred             ccccccccchhhhcccCcc------cccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHc-CCC-----CccC-------
Confidence            3466666666666665111      123459999999999887  578999999999874 320     0000       


Q ss_pred             HHHHHHHHHHHHHHhcCCcHH
Q 010976          326 ELYSQSAIYIAAAHALKPSYS  346 (496)
Q Consensus       326 ~~~~~A~~~~~~a~~l~p~~~  346 (496)
                        +..|..+|++|........
T Consensus       234 --~~~A~~~~~kAa~~g~~~A  252 (265)
T d1ouva_         234 --EKQAIENFKKGCKLGAKGA  252 (265)
T ss_dssp             --STTHHHHHHHHHHHTCHHH
T ss_pred             --HHHHHHHHHHHHHCcCHHH
Confidence              5679999999988776554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.84  E-value=1e-08  Score=90.42  Aligned_cols=125  Identities=13%  Similarity=-0.085  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010976          156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT  235 (496)
Q Consensus       156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~  235 (496)
                      .+++...|..+...|+              +++|+..|.+|+.+.++..-..+.           .+.+           
T Consensus        11 f~~~~~~g~~~~~~g~--------------~e~A~~~~~~AL~l~rG~~l~~~~-----------~~~w-----------   54 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGR--------------FEQASRHLSAALREWRGPVLDDLR-----------DFQF-----------   54 (179)
T ss_dssp             HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHTTCCSSTTGGGT-----------TSTT-----------
T ss_pred             HHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHhhCcccccccCc-----------chHH-----------
Confidence            5678889999999999              999999999999998876432221           1111           


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccC
Q 010976          236 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG  315 (496)
Q Consensus       236 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~  315 (496)
                       .+.....+.+....++.+++.++..+|++          ++|+.+++++++++|.+..+|.+++.+|..+|+       
T Consensus        55 -~~~~r~~l~~~~~~a~~~la~~~~~~g~~----------~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr-------  116 (179)
T d2ff4a2          55 -VEPFATALVEDKVLAHTAKAEAEIACGRA----------SAVIAELEALTFEHPYREPLWTQLITAYYLSDR-------  116 (179)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC-------
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHCCCc----------hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC-------
Confidence             11222333445678889999999999999          999999999999999999999999999999998       


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHH-------HhcCCcHH
Q 010976          316 TVNPREVSPNELYSQSAIYIAAA-------HALKPSYS  346 (496)
Q Consensus       316 ~~~~~~~~~~~~~~~A~~~~~~a-------~~l~p~~~  346 (496)
                                  +.+|...|+++       +-++|...
T Consensus       117 ------------~~eAl~~y~~~~~~L~~eLG~~P~~~  142 (179)
T d2ff4a2         117 ------------QSDALGAYRRVKTTLADDLGIDPGPT  142 (179)
T ss_dssp             ------------HHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             ------------HHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence                        55555555554       66777654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.42  E-value=8.2e-06  Score=75.18  Aligned_cols=46  Identities=17%  Similarity=0.224  Sum_probs=42.2

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 010976          155 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISD  216 (496)
Q Consensus       155 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~  216 (496)
                      ||.+++++|..++..++              +++|+++|++|.+.  ++..++++||.+|..
T Consensus         1 ~p~~~~~lG~~~~~~~d--------------~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~   46 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKD--------------FTQAKKYFEKACDL--KENSGCFNLGVLYYQ   46 (265)
T ss_dssp             CHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence            58899999999999999              99999999999775  689999999999875

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.32  E-value=3e-06  Score=68.62  Aligned_cols=84  Identities=14%  Similarity=0.112  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010976          156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH-DAFYNWAIAISDRAKMRGRTKEAEELWKQA  234 (496)
Q Consensus       156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~-~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A  234 (496)
                      ..+.+++|+++.....           ..+.+++|..++.+++.+|.+. +++|+||.+|+.    +|+|++|.      
T Consensus        35 ~qt~F~YAw~Lv~S~~-----------~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyk----lgdy~~A~------   93 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTD-----------VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK----LGEYSMAK------   93 (124)
T ss_dssp             HHHHHHHHHHHHHSSC-----------HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----HTCHHHHH------
T ss_pred             cchHHHHHHHHHcCCc-----------HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH----HhhHHHHH------
Confidence            7889999999987755           2448899999999999999775 899999999999    99999999      


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010976          235 TKNYEKAVQLNWNSPQALNNWGLALQE  261 (496)
Q Consensus       235 ~~~~~~Al~l~P~~~~a~~~lg~~l~~  261 (496)
                       .+++++|+++|++..+....-.+-.+
T Consensus        94 -~~~~~~L~ieP~n~qA~~L~~~Ie~~  119 (124)
T d2pqrb1          94 -RYVDTLFEHERNNKQVGALKSMVEDK  119 (124)
T ss_dssp             -HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             -HHHHHHHccCCCcHHHHHHHHHHHHH
Confidence             89999999999999998776665543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.25  E-value=7.4e-06  Score=66.19  Aligned_cols=103  Identities=9%  Similarity=-0.051  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHccC
Q 010976          186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP-QALNNWGLALQELSA  264 (496)
Q Consensus       186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~-~a~~~lg~~l~~~g~  264 (496)
                      +..-..-|.+...-.+ ...+.|++|.++..    ..+.    ..++++|..++.++..+|.+. .++++||..|.++|+
T Consensus        18 l~~~~~q~~~e~~~~~-s~qt~F~YAw~Lv~----S~~~----~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgd   88 (124)
T d2pqrb1          18 LEILRQQVVSEGGPTA-TIQSRFNYAWGLIK----STDV----NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE   88 (124)
T ss_dssp             HHHHHHHHHHTTGGGS-CHHHHHHHHHHHHH----SSCH----HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCCCC-CcchHHHHHHHHHc----CCcH----HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhh
Confidence            3333334444433233 37889999999987    6544    345667799999999999765 899999999999999


Q ss_pred             cchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976          265 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  307 (496)
Q Consensus       265 ~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g  307 (496)
                      |          ++|..+++++|+++|+|..+....-.+...+.
T Consensus        89 y----------~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~~~~  121 (124)
T d2pqrb1          89 Y----------SMAKRYVDTLFEHERNNKQVGALKSMVEDKIQ  121 (124)
T ss_dssp             H----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             H----------HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHh
Confidence            9          99999999999999999998877766655444

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.24  E-value=1.3e-05  Score=66.15  Aligned_cols=124  Identities=17%  Similarity=0.046  Sum_probs=92.4

Q ss_pred             hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 010976          183 DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL  262 (496)
Q Consensus       183 ~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~  262 (496)
                      ..++++|+++|+++.+..  +..+.++||...      ..+.++|+       ..|+++.+.  +++.+.++||.+|..-
T Consensus         6 ~kd~~~A~~~~~kaa~~g--~~~a~~~l~~~~------~~~~~~a~-------~~~~~aa~~--g~~~a~~~Lg~~y~~g   68 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELN--EMFGCLSLVSNS------QINKQKLF-------QYLSKACEL--NSGNGCRFLGDFYENG   68 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CTTHHHHHHTCT------TSCHHHHH-------HHHHHHHHT--TCHHHHHHHHHHHHHC
T ss_pred             ccCHHHHHHHHHHHHHCC--Chhhhhhhcccc------ccCHHHHH-------HHHhhhhcc--cchhhhhhHHHhhhhc
Confidence            456999999999999874  667778877543      66777777       777777665  6899999999999762


Q ss_pred             cCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 010976          263 SAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK  342 (496)
Q Consensus       263 g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~  342 (496)
                      -..      ..++.+|+.+|+++.+.  .++.+.++||.+|..-.-      ...         .+..|..+|++|.++.
T Consensus        69 ~~~------~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~g------v~~---------d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          69 KYV------KKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG------VVK---------NEKQAVKTFEKACRLG  125 (133)
T ss_dssp             SSS------CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS------SCC---------CHHHHHHHHHHHHHTT
T ss_pred             ccc------chhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCc------cCC---------CHHHHHHHHHHHHHCC
Confidence            211      23459999999999875  679999999998876210      000         1678999999998876


Q ss_pred             CcHH
Q 010976          343 PSYS  346 (496)
Q Consensus       343 p~~~  346 (496)
                      ....
T Consensus       126 ~~~A  129 (133)
T d1klxa_         126 SEDA  129 (133)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            5544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.14  E-value=9.7e-06  Score=66.91  Aligned_cols=120  Identities=16%  Similarity=0.124  Sum_probs=88.9

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976          135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  214 (496)
Q Consensus       135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~  214 (496)
                      ..++++|+.+|+++.+..  ++.+.++++..  ...+              +++|++.|+++.+.  +++.+.++||.+|
T Consensus         6 ~kd~~~A~~~~~kaa~~g--~~~a~~~l~~~--~~~~--------------~~~a~~~~~~aa~~--g~~~a~~~Lg~~y   65 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELN--EMFGCLSLVSN--SQIN--------------KQKLFQYLSKACEL--NSGNGCRFLGDFY   65 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CTTHHHHHHTC--TTSC--------------HHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHCC--Chhhhhhhccc--cccC--------------HHHHHHHHhhhhcc--cchhhhhhHHHhh
Confidence            358899999999999875  66777777642  2334              89999999999875  6899999999998


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc
Q 010976          215 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ  289 (496)
Q Consensus       215 ~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~  289 (496)
                      ..-.....++.+|+       .+|+++.+.  .++.+.++||.+|..-.-.      ..++.+|+.+|++|.++.
T Consensus        66 ~~g~~~~~d~~~A~-------~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv------~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          66 ENGKYVKKDLRKAA-------QYYSKACGL--NDQDGCLILGYKQYAGKGV------VKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHCSSSCCCHHHHH-------HHHHHHHHT--TCHHHHHHHHHHHHHTSSS------CCCHHHHHHHHHHHHHTT
T ss_pred             hhccccchhhHHHH-------HHHhhhhcc--CcchHHHHHHHHHHcCCcc------CCCHHHHHHHHHHHHHCC
Confidence            64100122455555       788888765  5899999999999872111      123499999999998864

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=3e-05  Score=66.78  Aligned_cols=104  Identities=13%  Similarity=0.160  Sum_probs=70.3

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCC--
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL--  441 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  441 (496)
                      +..|+|..............|.++||+|....|..+.......            ..+.....|++..+..|+.+.+-  
T Consensus         4 i~eG~L~Kr~~~k~k~~~~~WkrRwFVL~~~~L~Yyk~~~~~~------------~~~~~kG~I~L~~~~~v~~~~~~~~   71 (169)
T d1btka_           4 ILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERG------------RRGSKKGSIDVEKITCVETVVPEKN   71 (169)
T ss_dssp             CEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTT------------EEEEEEEEEEGGGEEEEEECCCCSS
T ss_pred             EEEEEEEEecCCCCCcCcCCceEEEEEEECCEEeeeccccccc------------cccCccceEeccceEEEEeecccCC
Confidence            3467777665544444555799999999877776543222110            01123557888877777654331  


Q ss_pred             ----------------------CCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHH
Q 010976          442 ----------------------TLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       442 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  479 (496)
                                            +...++.|.|.|.+...||.|+|.++++.|++||+-+-
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~t~~rt~~l~A~s~eE~~~WI~aL~~~i  131 (169)
T d1btka_          72 PPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWIHQLKNVI  131 (169)
T ss_dssp             CCGGGCC---------CCTTHHHHCCCEEEEEEETTCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred             CCccccccccccccccccccccccccCcceEEEeCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence                                  12356788888877777999999999999999998763

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=7.2e-05  Score=59.53  Aligned_cols=93  Identities=23%  Similarity=0.333  Sum_probs=64.9

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCC
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  443 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (496)
                      ++.|||....     .....|+++||+|+...|..+.....                ......|||.++..|..+.+.+.
T Consensus         2 lk~GwL~k~~-----~~~~~wkkRwFvL~~~~L~YYk~~~~----------------~~p~g~I~L~~~~~v~~~~~~~~   60 (112)
T d2coaa1           2 LREGWVVHYS-----NKDTLRKRHYWRLDCKCITLFQNNTT----------------NRYYKEIPLSEILTVESAQNFSL   60 (112)
T ss_dssp             SEEEEEEECC-----SSSCCCEEEEEEECSSEEEEESSSSC----------------SSCSEEEETTTCCEEEESCCCSS
T ss_pred             ceEEEEEEEC-----CCCCCeeEEEEEEEcceEEEEeccCC----------------CccceEEeeeccccccccccccc
Confidence            3567776552     22357999999999888776544222                13467899999999998888654


Q ss_pred             ----CCCCeeeEeecCCce-eeee-----------cChhhhhhHHHHHHHH
Q 010976          444 ----PPGAGLCIETIHGPV-FLVA-----------DSWEALDGWLDAIRLV  478 (496)
Q Consensus       444 ----~~~~~~~~~~~~~~~-~~~~-----------~~~~~~~~~~~a~~~~  478 (496)
                          +..++|.|.|.. .+ ||.+           ++.++...|++||+-+
T Consensus        61 ~~~~~~~~~F~I~T~~-rtyy~~~~~~~~~~~~s~~~~~~~~~W~~aI~~A  110 (112)
T d2coaa1          61 VPPGTNPHCFEIVTAN-ATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQA  110 (112)
T ss_dssp             SCTTSCCEEEEEECSS-CCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHH
T ss_pred             cccCCCccEEEEEeCC-eEEEEecCCccccccccccChHHHHHHHHHHHHh
Confidence                355778887544 34 4544           5677889999999864

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00014  Score=55.93  Aligned_cols=84  Identities=15%  Similarity=0.192  Sum_probs=57.1

Q ss_pred             hhhhhhccccchhh--hhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCcee
Q 010976          382 SDWKRSQFVLNHEG--LQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVF  459 (496)
Q Consensus       382 ~~~~~~~~~l~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (496)
                      ..|.++||+|...+  +..+......               ..+...|++..+..+......+....++|.+.+...-.|
T Consensus        14 k~W~krwfvL~~~~~~~ly~~~~~~~---------------~~~~~~i~l~~~~~~~~~~~~~~~~~~~F~i~~~~r~~~   78 (99)
T d2coca1          14 ETWSEVWAAIPMSDPQVLHLQGGSQD---------------GRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAKQSWY   78 (99)
T ss_dssp             SCEEEEEEECCTTCTTCEEEECCTTC---------------SSSCSEECGGGCEEECCCSSSCCSSSEEEEEEETTEEEE
T ss_pred             CCccEEEEEEecCCccEEEEECcCcc---------------ccccccccccceeeeecccccccCCceEEEEEcCCcEEE
Confidence            47999999997654  2221111110               123456777776655555555555788888886655569


Q ss_pred             eeecChhhhhhHHHHHHHHHH
Q 010976          460 LVADSWEALDGWLDAIRLVYT  480 (496)
Q Consensus       460 ~~~~~~~~~~~~~~a~~~~~~  480 (496)
                      |.|+|.+++..|++||..+.|
T Consensus        79 l~A~s~~e~~~Wi~aL~~Aa~   99 (99)
T d2coca1          79 LSASSAELQQQWLETLSTAAH   99 (99)
T ss_dssp             EEESSHHHHHHHHHHHHHHHS
T ss_pred             EECCCHHHHHHHHHHHHHhcC
Confidence            999999999999999987653

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=0.00024  Score=55.99  Aligned_cols=98  Identities=11%  Similarity=0.149  Sum_probs=65.3

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCC
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  443 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (496)
                      ++.|+|......... ....|.++||+|.+..|..+.....                ..+...|++.++..+........
T Consensus        10 ~k~G~L~k~~~~~~~-~~~~W~~r~~vL~~~~L~~y~~~~~----------------~~p~g~i~L~~~~~~~~~~~~~~   72 (111)
T d1u5fa1          10 IKAGYLEKRRKDHSF-LGFEWQKRWCALSKTVFYYYGSDKD----------------KQQKGEFAIDGYDVRMNNTLRKD   72 (111)
T ss_dssp             EEEEEEEEECCCSSC-SSCSEEEEEEEEETTEEEEESSTTC----------------SSCSEEEECTTCEEEECTTSCSS
T ss_pred             eEEEEEEEECCCCCC-CcCCceEEEEEEECCEEEeeccccc----------------cCcceEEEecccEEEeecccccc
Confidence            446777654332221 2347999999998887776543211                11245677777655544444444


Q ss_pred             C-CCCeeeEeecCCce-eeeecChhhhhhHHHHHHHH
Q 010976          444 P-PGAGLCIETIHGPV-FLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       444 ~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~  478 (496)
                      + ..++|.+.+.++.. +|.|+|.+++..|.+||+.|
T Consensus        73 ~~~~~~f~i~~~~~~~~~~~a~s~~e~~~W~~ai~~~  109 (111)
T d1u5fa1          73 GKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFI  109 (111)
T ss_dssp             TTGGGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ccccceEEEEccCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence            4 56888888777755 77799999999999999876

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=0.00026  Score=58.29  Aligned_cols=90  Identities=14%  Similarity=0.257  Sum_probs=59.6

Q ss_pred             ChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCC-CCCeeeEeecCCce
Q 010976          380 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP-PGAGLCIETIHGPV  458 (496)
Q Consensus       380 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  458 (496)
                      ....|.++||+|....+.-.-...-..          .-........|++.++..+..+.....+ +.++|.|-|.++.+
T Consensus        38 ~~~~WkkrwfvL~~~~~~~~~~L~yy~----------~~~~~k~~g~i~l~~~~~~~~~~~~~~~~~~~~F~l~t~~~~~  107 (136)
T d1v5ma_          38 GTAQWQKCRLLLRRAVAGERFRLEFFV----------PPKASRPKVSIPLSAIIEVRTTMPLEMPEKDNTFVLKVENGAE  107 (136)
T ss_dssp             CSCCCEEEEEEEEECSSSCCEEEEEES----------STTSSSCSSCEETTTCCBCCCCCCSSSCCCTTEECCBCTTSCB
T ss_pred             CCCCceEEEEEEeCCcccchhhhhhhC----------cccccCcCcceecccceeeeeeccccCCCCCcEEEEEcCCCcE
Confidence            345799999999876532111111100          0000123446777777777766665555 67999999888876


Q ss_pred             e-eeecChhhhhhHHHHHHHHH
Q 010976          459 F-LVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       459 ~-~~~~~~~~~~~~~~a~~~~~  479 (496)
                      | |.|+|.++++.|++||.-+.
T Consensus       108 y~f~A~s~~e~~~Wv~ai~~ai  129 (136)
T d1v5ma_         108 YILETIDSLQKHSWVADIQGCV  129 (136)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHH
Confidence            5 56999999999999998764

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00036  Score=53.94  Aligned_cols=92  Identities=18%  Similarity=0.282  Sum_probs=62.0

Q ss_pred             hhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCC
Q 010976          365 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP  444 (496)
Q Consensus       365 ~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (496)
                      +.|+|....     .....|.++||+|....|..+.....                ......|+|.++..+....+.  -
T Consensus         6 KeG~L~K~~-----~~~k~Wk~R~fvL~~~~L~yy~~~~~----------------~~~~g~i~L~~~~~v~~~~~~--~   62 (100)
T d1faoa_           6 KEGYLTKQG-----GLVKTWKTRWFTLHRNELKYFKDQMS----------------PEPIRILDLTECSAVQFDYSQ--E   62 (100)
T ss_dssp             EEEEEEEEC-----SSSCCEEEEEEEEETTEEEEESSTTC----------------SSCSEEEEGGGCCEEEEECSS--S
T ss_pred             EEEEEEEeC-----CCCCCceEEEEEEECCEEEEEeccCC----------------ccCceEEechheEEEEecccc--c
Confidence            457775442     12347999999998877765432211                112456788777666554433  2


Q ss_pred             CCCeeeEeecCCceeeeecChhhhhhHHHHHHHHH
Q 010976          445 PGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      ..++|.|.|...-.||.|+|.++++.|++||+.+.
T Consensus        63 ~~~~F~i~~~~r~~~l~a~s~~~~~~Wi~ai~~~i   97 (100)
T d1faoa_          63 RVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKL   97 (100)
T ss_dssp             SSSEEEEEETTEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cccccccccCCeEEEEEeCCHHHHHHHHHHHHHHH
Confidence            45778888765545899999999999999998653

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00077  Score=53.08  Aligned_cols=95  Identities=17%  Similarity=0.258  Sum_probs=61.5

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCC
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  443 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (496)
                      .+.|||.....+   .....|.++||+|....|..+...+.                ......|++..+ .|..+.....
T Consensus         4 ik~GwL~k~~~~---~~~~~WkkRwFvL~~~~L~yyk~~~~----------------~~~~~~i~l~~~-~v~~~~~~~~   63 (111)
T d2dyna_           4 IRKGWLTINNIG---IMKGGSKEYWFVLTAENLSWYKDDEE----------------KEKKYMLSVDNL-KLRDVEKGFM   63 (111)
T ss_dssp             EEEEEEEETTCC---TTTTSSEEEEEEEESSEEEEESSTTC----------------CCEEEEEECTTE-EEEEECCCST
T ss_pred             EEEeeEEEECCC---CCcCCceEEEEEEECCEEEEEcchhh----------------cccccccccccc-eeEeeccccc
Confidence            356888754322   22456999999998877776543322                122345666543 3444444555


Q ss_pred             CCCCeeeEeecCC--------ceeeeecChhhhhhHHHHHHHH
Q 010976          444 PPGAGLCIETIHG--------PVFLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       444 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~a~~~~  478 (496)
                      ..-++|.+.+..+        ..||-|+|.++++.|.+||+.+
T Consensus        64 ~~~~~F~l~~~~~~~~~~~~r~~~l~a~s~ed~~~W~~al~~A  106 (111)
T d2dyna_          64 SSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRA  106 (111)
T ss_dssp             TCSEEEEEEESSCSCSBTTBSSEEEEESSHHHHHHHHHHHHHT
T ss_pred             cccccEEeeeccccccccCceeEEEECCCHHHHHHHHHHHHHh
Confidence            5667777765433        2599999999999999999864

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00041  Score=53.55  Aligned_cols=95  Identities=22%  Similarity=0.348  Sum_probs=62.9

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCC
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  443 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (496)
                      ++.|+|....     .....|.++||+|....+........                ..+...|++..+..+..+.+...
T Consensus         4 ik~G~L~K~~-----~~~~~Wkkr~fvL~~~~l~yy~~~~~----------------~~~~~~i~l~~~~~~~~~~~~~~   62 (103)
T d1eaza_           4 IKAGYCVKQG-----AVMKNWKRRYFQLDENTIGYFKSELE----------------KEPLRVIPLKEVHKVQECKQSDI   62 (103)
T ss_dssp             SEEEEEEEEC-----TTTCCEEEEEEEECSSEEEEESSTTC----------------SSCSEEEEGGGCCEEEECTTHHH
T ss_pred             EEEEEEEEEC-----CCCCCeeEEEEEEECCEEEEEecccC----------------cccceEEEccceEEeeccccccc
Confidence            3567775431     12336999999998777776533222                12344667766655554443222


Q ss_pred             -CCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHH
Q 010976          444 -PPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       444 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  479 (496)
                       ...+.|.+.+.....||.|+|.+++..|.+||..+.
T Consensus        63 ~~~~~~f~i~~~~~~~~~~a~s~~e~~~W~~aI~~ai   99 (103)
T d1eaza_          63 MMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAI   99 (103)
T ss_dssp             HTCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cccceEEEEEeCCEEEEEEeCCHHHHHHHHHHHHHHH
Confidence             255678888777777999999999999999998763

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00049  Score=56.56  Aligned_cols=99  Identities=14%  Similarity=0.124  Sum_probs=67.0

Q ss_pred             hhhhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCC
Q 010976          362 PYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL  441 (496)
Q Consensus       362 ~~l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (496)
                      |-...|||....     .....|.++||+|....|..+....+                ......|+|.++.++....+ 
T Consensus        10 ~~~~eG~L~k~~-----~~~k~WkkrwfvL~~~~L~yY~~~~d----------------~~~~~~i~L~~~~~~~~~~~-   67 (136)
T d1x1fa1          10 PLYFEGFLLIKR-----SGYREYEHYWTELRGTTLFFYTDKKS----------------IIYVDKLDIVDLTCLTEQNS-   67 (136)
T ss_dssp             CEEEEEEEEEEC-----TTCCSCEEEEEEEETTEEEEESCSSC----------------SSCSEECCCSSCCEEEECCC-
T ss_pred             CccEEEEEEEEC-----CCCCCeEEEEEEEcCCEeEEEeeccc----------------ccccccccccceeeeeeecc-
Confidence            344578887542     22347999999998777766543221                11244567776665553322 


Q ss_pred             CCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHHHHH
Q 010976          442 TLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIY  482 (496)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  482 (496)
                      +--+.+.|+|.|...-.+|.|+|.++++.|..+|.-|.+..
T Consensus        68 ~~~~~~~F~i~~~~~~~~f~Aes~~e~~~Wi~~I~~v~~~~  108 (136)
T d1x1fa1          68 TEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTELS  108 (136)
T ss_dssp             TTSCCCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHHSS
T ss_pred             cccccceeeecCCCceEEEEeCCHHHHHHHHHHHHHHHhcc
Confidence            22356889998777767999999999999999998876543

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0012  Score=50.87  Aligned_cols=92  Identities=10%  Similarity=0.146  Sum_probs=63.0

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCC
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  443 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (496)
                      ++.|+|.....    .....|.++||+|....|.........                .+...|+|.++..+..      
T Consensus         2 ik~G~L~K~~~----~~~~~W~kr~fvL~~~~L~~~~~~~~~----------------~~~~~i~L~~~~~~~~------   55 (102)
T d2coda1           2 VKSGWLDKLSP----QGKRMFQKRWVKFDGLSISYYNNEKEM----------------YSKGIIPLSAISTVRV------   55 (102)
T ss_dssp             CEEEEEEECCS----SSSSCCEEEEEEECSSEEEEEESSCCS----------------SCCCEEETTTEEEEEE------
T ss_pred             cEEEEEEEECC----CCCCCceEEEEEEECCEEEEEeccCcc----------------eeEEEEEchhceeecc------
Confidence            34677754421    124579999999997777765432221                1234677777665543      


Q ss_pred             CCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHHHH
Q 010976          444 PPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTI  481 (496)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  481 (496)
                      ...+.|.|.+.....||.|+|.+++..|++||..+...
T Consensus        56 ~~~~~f~i~~~~~~~~l~a~s~~e~~~Wi~ai~~~i~~   93 (102)
T d2coda1          56 QGDNKFEVVTTQRTFVFRVEKEEERNDWISILLNALKS   93 (102)
T ss_dssp             ETTTEEEEEESSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ccceeEEEEcCCcEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence            35678999876666789999999999999999887544

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.0016  Score=51.46  Aligned_cols=94  Identities=18%  Similarity=0.250  Sum_probs=62.3

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCC
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  443 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (496)
                      ++.|+|....     .....|+++||+|....|........                ......+++.++..++...+...
T Consensus         9 ~k~G~L~K~~-----~~~k~WkkR~fvL~~~~l~y~~~~~~----------------~~~~~~~~l~~~~~~~~~~~~~~   67 (118)
T d1v89a_           9 IKMGWLKKQR-----SIVKNWQQRYFVLRAQQLYYYKDEED----------------TKPQGCMYLPGCTIKEIATNPEE   67 (118)
T ss_dssp             EEEEEEEEEC-----SSSSCEEEEEEEEETTEEEEESSSSC----------------CSCSEEECSTTEEEEEECCCSSC
T ss_pred             eEEEEEEEEC-----CCCCCcEEEEEEEECCEEEEecccCc----------------ccccceeccCceEEEEecccccc
Confidence            4567776432     22346999999998766655433222                11234566666555555555566


Q ss_pred             CCCCeeeEeecCCc--------eeeeecChhhhhhHHHHHHHH
Q 010976          444 PPGAGLCIETIHGP--------VFLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       444 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~a~~~~  478 (496)
                      +.-+.|.+.+....        .||.|++.++++.|+.||.-+
T Consensus        68 ~~~~~f~l~~~~~~~~~~~~~~~~~~a~s~ee~~~Wi~aI~~a  110 (118)
T d1v89a_          68 AGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRV  110 (118)
T ss_dssp             CCCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCCcceecCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence            66677777655442        489999999999999999877

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0018  Score=50.00  Aligned_cols=96  Identities=21%  Similarity=0.214  Sum_probs=62.4

Q ss_pred             hhhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCC
Q 010976          363 YLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT  442 (496)
Q Consensus       363 ~l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (496)
                      ....|+|.....    .....|.++||+|....|..+.....                ......+++..+..+.......
T Consensus         9 ~~~~G~L~k~~~----~~~k~W~kr~~vL~~~~L~~y~~~~~----------------~~~~~~i~l~~~~v~~~~~~~~   68 (107)
T d1upqa_           9 VHIRGWLHKQDS----SGLRLWKRRWFVLSGHCLFYYKDSRE----------------ESVLGSVLLPSYNIRPDGPGAP   68 (107)
T ss_dssp             EEEEEEEEEECS----SSSCCEEEEEEEEETTEEEEESSTTC----------------CSCCEEEEGGGCEEEECCSSCT
T ss_pred             eeEEEEEEEeCC----CCCCCeeEEEEEEECCEEEEecCccc----------------ccccceecccceEEEEeccCcc
Confidence            345777764321    12346999999998877765432221                1234567776655444333344


Q ss_pred             CCCCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHH
Q 010976          443 LPPGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       443 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~  478 (496)
                      -...+.|.+.+..+. .+|.|+|.++++.|+.||+.+
T Consensus        69 ~~~~~~~~i~~~~~~~~~~~a~s~~e~~~Wi~al~~A  105 (107)
T d1upqa_          69 RGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRA  105 (107)
T ss_dssp             TSSSSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             cCcceEEEEEcCCCeEEEEEcCCHHHHHHHHHHHHHH
Confidence            445677777765554 489999999999999999875

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.44  E-value=0.0013  Score=50.69  Aligned_cols=93  Identities=22%  Similarity=0.245  Sum_probs=57.6

Q ss_pred             hhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCC
Q 010976          365 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP  444 (496)
Q Consensus       365 ~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (496)
                      +.|+|....+     ....|.++||+|....|..+.....                ......|++... +|..+.+..-.
T Consensus         3 K~G~L~k~~~-----~~k~W~kR~fvL~~~~L~yy~~~~~----------------~~~~~~i~l~~~-~v~~~~~~~~~   60 (101)
T d2fjla1           3 KNGILYLEDP-----VNHEWYPHYFVLTSSKIYYSEETSS----------------DLLRGVLDVPAC-QIAIRPEGKNN   60 (101)
T ss_dssp             EEEEEEEEET-----TTTEEEEEEEEEETTEEEECCCCSC----------------TCCCEEECSTTC-EEEEETTCSSS
T ss_pred             eEEEEEEEcC-----CCCCCeEEEEEEECCEEEEEecccc----------------ceecceEEcCCc-eeEeeeeeccc
Confidence            4566655421     2347999999998877766432111                012334555543 23333333334


Q ss_pred             CCCeeeEeecCC---ceeeeecChhhhhhHHHHHHHHH
Q 010976          445 PGAGLCIETIHG---PVFLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       445 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      ..++|.|.+...   ..||.|+|.+++..|+.||+-|-
T Consensus        61 ~~~~f~i~~~~~~~~~~~~~a~s~~e~~~Wi~ai~~~~   98 (101)
T d2fjla1          61 RLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVA   98 (101)
T ss_dssp             CSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred             ccceeEEeccccccEEEEEEeCCHHHHHHHHHHHHHHH
Confidence            557788876543   25999999999999999999764

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.43  E-value=0.0013  Score=51.85  Aligned_cols=94  Identities=19%  Similarity=0.221  Sum_probs=60.1

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchhh--hhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCC
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEG--LQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL  441 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (496)
                      ...|+|.....     ....|+++||+|+..+  |.......+                ....-.|++.++.++....+.
T Consensus         9 ~~eG~L~k~~~-----~~k~WkkR~fvL~~~~~~L~~~~~~~~----------------~~p~g~i~l~~~~~v~~~~~~   67 (117)
T d1v5ua_           9 SYEGILYKKGA-----FMKPWKARWFVLDKTKHQLRYYDHRMD----------------TECKGVIDLAEVEAVAPGTPT   67 (117)
T ss_dssp             SEEEEEEECCC-----SSSCCEEEEEEEETTTTEEEEESSSSC----------------SSCCCEEEGGGEEEEECCCCC
T ss_pred             eEEEEEEEECC-----CCCCceEEEEEEeCCCCEEEecccccc----------------cCcceEEEecceEEEeecccc
Confidence            45677765421     2347999999997543  333222111                112346788888877765553


Q ss_pred             -CCC----CCCeeeEeecCCceeeeecChhhhhhHHHHHHHH
Q 010976          442 -TLP----PGAGLCIETIHGPVFLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       442 -~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  478 (496)
                       ..|    +.+.|.+.+.....||.|+|.++.+.|+.+|+.+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~a~s~~e~~~Wv~~l~~a  109 (117)
T d1v5ua_          68 IGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSC  109 (117)
T ss_dssp             TTSCSSSCTTTCEEEEESSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred             cccccccccceEEEeeCCCcEEEEEeCCHHHHHHHHHHHHHH
Confidence             222    3455666665555699999999999999999865

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.35  E-value=0.0025  Score=51.06  Aligned_cols=97  Identities=16%  Similarity=0.267  Sum_probs=53.9

Q ss_pred             hccccCCCCCCCCCChhhhhhhccccchh--hhhhhccccccccccccCCCCCCCCCCC-ceeeeecCceeecccccCC-
Q 010976          366 AGYLTAPPAGIPVAPHSDWKRSQFVLNHE--GLQQASKNEQKQVTRSLSGRTGDFSPDR-RAIRIEVPDIVSVSACADL-  441 (496)
Q Consensus       366 ~g~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-  441 (496)
                      .|||.....    .....|.++||+|+..  .|..+.. ++..           ...+. ....|.+..+..+..+... 
T Consensus        18 ~GyL~k~~~----~~~k~WkrRwFvL~~~~~~L~yy~~-~~~~-----------~~~g~~~l~~i~~~~~~~~~~~~~~~   81 (126)
T d1v5pa_          18 CGFLDIEDN----ENSGKFLRRYFILDTQANCLLWYMD-NPQN-----------LAVGAGAVGSLQLTYISKVSIATPKQ   81 (126)
T ss_dssp             ECCEEEECT----TCSSCEEEEEEEEETTTTEEEEESS-CTTT-----------SCTTCCCSEEEETTTCCEEEECCTTT
T ss_pred             eeeEEEECC----CCCCCeeEEEEEEEcCCCeEEEeec-cccc-----------cccceeecccceeeeeeccccccccc
Confidence            577764422    2244799999999632  2333222 1111           01111 1224444444444433222 


Q ss_pred             CCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHH
Q 010976          442 TLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  478 (496)
                      .....+.|.+.|..-..||.|+|.++++.|++||.-+
T Consensus        82 ~~~~~~~~~~~~~~r~~~l~Aes~~e~~~Wi~aL~~A  118 (126)
T d1v5pa_          82 KPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQA  118 (126)
T ss_dssp             SCSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHT
T ss_pred             cccccceEEEcCCCeeEEEECCCHHHHHHHHHHHHHH
Confidence            2234566777654444589999999999999999865

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0022  Score=50.22  Aligned_cols=97  Identities=22%  Similarity=0.299  Sum_probs=65.3

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCC
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  443 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (496)
                      ++.|+|....     .....|.++||+|....|..+.....                ......|++.++..+..+.+.. 
T Consensus         6 ikeG~L~k~~-----~~~k~WkkryfvL~~~~L~~y~~~~~----------------~~p~~~i~l~~~~~~~~~~~~~-   63 (113)
T d1plsa_           6 IREGYLVKKG-----SVFNTWKPMWVVLLEDGIEFYKKKSD----------------NSPKGMIPLKGSTLTSPCQDFG-   63 (113)
T ss_dssp             SEEEEEEEES-----SSSSCCEEEEEEEETTEEEEESSTTC----------------SSCSEEEESSSCCEESSCCSSC-
T ss_pred             eEEEEEEEeC-----CCCCCceEEEEEEECCEEEEEecCCc----------------cccceEEECccCeEEeeecccC-
Confidence            4567775432     12336999999998777776532211                1234567888877766655433 


Q ss_pred             CCCCeeeEeecCCce-eeeecChhhhhhHHHHHHHHHHHH
Q 010976          444 PPGAGLCIETIHGPV-FLVADSWEALDGWLDAIRLVYTIY  482 (496)
Q Consensus       444 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~  482 (496)
                      ...+.|.+-+..+.. +|.++|.++.+.|..||+.+....
T Consensus        64 ~~~~~f~l~~~~~~~~~~~a~s~~e~~~Wi~ai~~ai~~~  103 (113)
T d1plsa_          64 KRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIKCI  103 (113)
T ss_dssp             CSSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CcceEEEEecCCCeEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence            245667766666654 899999999999999999886654

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0025  Score=48.81  Aligned_cols=94  Identities=19%  Similarity=0.204  Sum_probs=53.8

Q ss_pred             hhccccCCCCCCCCCChhhhhhhccccchhhhhh-hccccccccccccCCCCCCCCCCCceeeeecCceeeccccc--CC
Q 010976          365 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQ-ASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACA--DL  441 (496)
Q Consensus       365 ~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  441 (496)
                      +.|+|.....     ....|.++||+|....+.- ....+..               ..+...|++.++..+....  +.
T Consensus         4 k~G~L~k~~~-----~~k~WkkR~fvL~~~~~~l~~~~~~~~---------------~~~~~~i~~~~~~~~~~~~~~~~   63 (104)
T d2i5fa1           4 KQGCLLKQGH-----RRKNWKVRKFILREDPAYLHYYDPAGA---------------EDPLGAIHLRGCVVTSVESNSNG   63 (104)
T ss_dssp             EEEEEEEECT-----TTCCEEEEEEEEETTTTEEEEECTTSC---------------SSCSEEEECTTCEEEEECC----
T ss_pred             EEEEEEEECC-----CCCCcEEEEEEEECCeeEEEEEcCccc---------------cCccceEeecceEEEEeccCccc
Confidence            4566654421     1236999999996554321 1111110               1122345555544433222  22


Q ss_pred             -CCCCCCeeeEeecCCce-eeeecChhhhhhHHHHHHHH
Q 010976          442 -TLPPGAGLCIETIHGPV-FLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       442 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~  478 (496)
                       .-+..++|.+-+..+.. +|.|+|.++...|+.||+.+
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~a~s~~e~~~W~~ai~~a  102 (104)
T d2i5fa1          64 RKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA  102 (104)
T ss_dssp             ----CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ccccCccEEEEECCCCeEEEEEcCCHHHHHHHHHHHHHH
Confidence             22356677777677665 88899999999999999876

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0025  Score=49.24  Aligned_cols=83  Identities=11%  Similarity=0.088  Sum_probs=55.0

Q ss_pred             hhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCC-CCCCCCeeeEeecCCc-e
Q 010976          381 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL-TLPPGAGLCIETIHGP-V  458 (496)
Q Consensus       381 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~  458 (496)
                      ...|.++||+|....|........                ..+...|++.++......... .-+..++|.|-+.++. +
T Consensus        18 ~~~Wkkr~~vL~~~~L~y~~~~~~----------------~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~   81 (106)
T d1u5da1          18 GSEWQKRWCVVSRGLFYYYANEKS----------------KQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRRTY   81 (106)
T ss_dssp             CEEEEEEEEEEETTEEEEESSTTC----------------SSCSEEEECTTCEEEECGGGCSSGGGGGEEEEECSSSCCE
T ss_pred             cCCcEEEEEEEECCEEEEEecccc----------------cccccccccCCceEeeccccccccCCceeEEEEcCCCcEE
Confidence            357999999998766654322111                112346667665433332222 2336778988876654 5


Q ss_pred             eeeecChhhhhhHHHHHHHHH
Q 010976          459 FLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       459 ~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      +|.|+|.++++.|++||.-|-
T Consensus        82 ~f~a~s~~e~~~W~~ai~~~i  102 (106)
T d1u5da1          82 EFTATSPAEARDWVDQISFLL  102 (106)
T ss_dssp             EEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEeCCHHHHHHHHHHHHHHH
Confidence            899999999999999998764

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0041  Score=49.60  Aligned_cols=97  Identities=16%  Similarity=0.113  Sum_probs=55.3

Q ss_pred             hhccccCCCCCCCCCChhhhhhhccccchhhhh-hhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCC
Q 010976          365 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQ-QASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  443 (496)
Q Consensus       365 ~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (496)
                      ..|||.....    .....|.++||+|....+. .+.......             .......|++..+..+........
T Consensus        10 ~~G~L~K~g~----~~~k~WkkRwfvL~~~~~~~yy~~~~~~~-------------~~~~~~~i~l~~~~~~~~~~~~~~   72 (126)
T d1wi1a_          10 HSGYLWAIGK----NVWKRWKKRFFVLVQVSQYTFAMCSYREK-------------KAEPQELLQLDGYTVDYTDPQPGL   72 (126)
T ss_dssp             EEEEEEEECS----SSCCSCEEEEEEEEEEETTEEEEEECCSS-------------SSCCSEEEECSSCEEEECCCCSSC
T ss_pred             EEEEEEEECC----CCCCCceEEEEEEeCCceEEEEEcccccc-------------cccceeeeeeceeeeeeccccccc
Confidence            4677765421    1234799999999765433 222111110             011234566665544433333333


Q ss_pred             C-CCCeeeEeecCCceeeeecChhhhhhHHHHHHHH
Q 010976          444 P-PGAGLCIETIHGPVFLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       444 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  478 (496)
                      . ..+.|.+.+...-.||.|+|.++++.|++||.-+
T Consensus        73 ~~~~~~~~i~~~~r~~~f~A~s~~e~~~Wv~al~~a  108 (126)
T d1wi1a_          73 EGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRA  108 (126)
T ss_dssp             CSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             cccceeEEeccCCeEEEEEECCHHHHHHHHHHHHHH
Confidence            3 3344566644444599999999999999999764

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0022  Score=49.34  Aligned_cols=91  Identities=22%  Similarity=0.307  Sum_probs=53.3

Q ss_pred             hhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCC
Q 010976          365 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP  444 (496)
Q Consensus       365 ~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (496)
                      +.|+|.....  .......|.++||+|....|......+.                 .....|++. ..+|.++.+  ..
T Consensus         7 k~G~L~k~~~--~g~~~k~W~kRwfvL~~~~L~y~~~~~~-----------------~~~~~i~l~-~~~v~~~~~--~~   64 (101)
T d2elba2           7 KAGYLNARNK--TGLVSSTWDRQFYFTQGGNLMSQARGDV-----------------AGGLAMDID-NCSVMAVDC--ED   64 (101)
T ss_dssp             CEEEEEECSC--CC----CCCEEEEEEETTEEEEECTTCC-----------------CE----EEE-ECCCCCCCC--CC
T ss_pred             EeEEEEEecc--CCCCccccEEEEEEEeCCEEEEEccCCc-----------------ccceEEEec-ccccccccc--cC
Confidence            4677765421  1223457999999998766654322111                 112334442 334444433  34


Q ss_pred             CCCeeeEeecCCc--eeeeecChhhhhhHHHHHHH
Q 010976          445 PGAGLCIETIHGP--VFLVADSWEALDGWLDAIRL  477 (496)
Q Consensus       445 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~  477 (496)
                      +.+.|.|-+.++.  .+|-|+|.++++.|..||.=
T Consensus        65 ~~~~f~i~~~~~~~~~~l~A~s~~e~~~Wi~al~~   99 (101)
T d2elba2          65 RRYCFQITSFDGKKSSILQAESKKDHEEWICTINN   99 (101)
T ss_dssp             SSSSSEECCCSSSCCCCEECSSHHHHHHHHHHHHH
T ss_pred             CcceEEEEeecccceEEEECCCHHHHHHHHHHHHh
Confidence            6677888766553  58999999999999999974

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0037  Score=47.97  Aligned_cols=53  Identities=19%  Similarity=0.186  Sum_probs=39.6

Q ss_pred             eeeeecCceeecccccCCCCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHH
Q 010976          424 AIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  478 (496)
                      ...|++..+..+......  ...++|.+-|.....+|.|+|.++++.|++||+-|
T Consensus        50 ~~~i~l~~~~~~~~~~~~--~~~~~f~i~t~~r~~~l~A~s~~e~~~Wi~al~~l  102 (103)
T d1qqga1          50 KRSIPLESCFNINKRADS--KNKHLVALYTRDEHFAIAADSEAEQDSWYQALLQL  102 (103)
T ss_dssp             SEEEEGGGEEEEEEECCS--SCSSEEEEEESSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             cceEecceeeEEeecccC--CCceEEEEEeCCeEEEEEcCCHHHHHHHHHHHHhh
Confidence            346777776666544432  24578888877666799999999999999999854

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.66  E-value=0.0048  Score=48.90  Aligned_cols=108  Identities=12%  Similarity=0.183  Sum_probs=59.8

Q ss_pred             hhhhhccccCCCCCC---CCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccc
Q 010976          362 PYLKAGYLTAPPAGI---PVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSAC  438 (496)
Q Consensus       362 ~~l~~g~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (496)
                      +....|+|.......   .......|.++||+|....|..+.........    +   . ........|.+.. ..+..+
T Consensus         7 ~~~~eG~L~rk~~~~~~~kk~~~~~W~kr~~vL~~~~L~yy~~~~~~~~~----~---~-~~~~~~~~v~~~~-~~~~~~   77 (122)
T d1droa_           7 GEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSN----P---E-LTFRGEPSYDLQN-AAIEIA   77 (122)
T ss_dssp             SSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHC----T---T-CCSSCCCBCCCSS-CCCEEC
T ss_pred             CcceEEEEEEeecccccCcccCCCCceEEEEEEeCCEEEEEcCccccccc----C---c-ccccccceEeccc-eEEEec
Confidence            344567775432111   12234469999999987777665443332100    0   0 0001111111111 111222


Q ss_pred             cCCCCCCCCeeeEeecCCce-eeeecChhhhhhHHHHHHHHH
Q 010976          439 ADLTLPPGAGLCIETIHGPV-FLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      .+.+ ...+.|.+-+..+.+ ||.|+|.++++.|+.||+.+.
T Consensus        78 ~~~~-~~~~~~~l~~~~~~~~~f~a~s~~d~~~Wv~al~~~~  118 (122)
T d1droa_          78 SDYT-KKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQS  118 (122)
T ss_dssp             CSSS-SSTTEEEEECSSSCEEEEECSSSHHHHHHHHHHHHHH
T ss_pred             cccc-cccceEEEECCCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence            2221 256789998888776 788999999999999999875

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.0063  Score=49.14  Aligned_cols=84  Identities=14%  Similarity=0.229  Sum_probs=50.6

Q ss_pred             hhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCceeee
Q 010976          382 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLV  461 (496)
Q Consensus       382 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (496)
                      ..|.++||+|....|..+.......            ........|+|... .++...+ .-.+.++|.|.|.....+|.
T Consensus        25 k~Wkkr~fvL~~~~L~~y~~~~~~~------------~~~~~~~~i~L~~~-~v~~~~~-~~~r~~~F~i~~~~~~~~f~   90 (133)
T d2j59m1          25 RPWKQMYVVLRGHSLYLYKDKREQT------------TPSEEEQPISVNAC-LIDISYS-ETKRKNVFRLTTSDCECLFQ   90 (133)
T ss_dssp             -CCEEEEEEEETTEEEEESCTTCC--------------------CEECSSC-EEEECSS-SCSCSSEEEEECSSCEEEEE
T ss_pred             CCceEEEEEEeCCEEEEEecccccc------------ccccccccceecce-EEEEccc-ccccCceeEEecCCCEEEEE
Confidence            3699999999876666543322211            00112233444421 2222222 12356889999877777999


Q ss_pred             ecChhhhhhHHHHHHHHH
Q 010976          462 ADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       462 ~~~~~~~~~~~~a~~~~~  479 (496)
                      |+|.++++.|++||..+.
T Consensus        91 A~s~~e~~~Wi~ai~~a~  108 (133)
T d2j59m1          91 AEDRDDMLAWIKTIQESS  108 (133)
T ss_dssp             CSSHHHHHHHHHHHHHHC
T ss_pred             eCCHHHHHHHHHHHHHHH
Confidence            999999999999998753

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0091  Score=49.23  Aligned_cols=100  Identities=15%  Similarity=0.180  Sum_probs=60.2

Q ss_pred             hhhccccCCCCCCCC-CChhhhhhhccccchhhh-----hhhccccccccccccCCCCCCCCCCCceeeeecCceeeccc
Q 010976          364 LKAGYLTAPPAGIPV-APHSDWKRSQFVLNHEGL-----QQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSA  437 (496)
Q Consensus       364 l~~g~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (496)
                      .+.|||......... .....|.++||+|.....     ..+-....               .......|++..+..+..
T Consensus        19 ~k~G~L~K~~~~~~~~~~~k~WkkR~fvL~~~~~~~~~L~yy~~~~~---------------~~~~~g~i~l~~~~~~~~   83 (150)
T d1wg7a_          19 TKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKI---------------SKEPKGSIFLDSCMGVVQ   83 (150)
T ss_dssp             CCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCC---------------SSCCSEEECTTTCCEECC
T ss_pred             eEEEEEEEecCCCCcccccccceEEEEEEEcCcCCceeEEEEecccc---------------cccccccccccccccccc
Confidence            457887654322111 112469999999975432     11111000               012344566666555444


Q ss_pred             ccCCCCCCCCeeeEeecCCce-eeeecChhhhhhHHHHHHHHHHH
Q 010976          438 CADLTLPPGAGLCIETIHGPV-FLVADSWEALDGWLDAIRLVYTI  481 (496)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~  481 (496)
                      ..+   ...++|.|.+..+.+ +|.|+|.++++.|+.||..+...
T Consensus        84 ~~~---~~~~~F~i~~~~~~~~~l~A~s~~e~~~Wi~aL~~~i~~  125 (150)
T d1wg7a_          84 NNK---VRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQL  125 (150)
T ss_dssp             CCS---SCTTEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             Ccc---ccceEEEEEcCCCeEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence            332   356888888666655 78999999999999999977543

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.39  E-value=0.0085  Score=47.29  Aligned_cols=94  Identities=20%  Similarity=0.286  Sum_probs=59.7

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCC
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  443 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (496)
                      +..|+|.....    .....|.++||+|....|..+... .                 ...-.|++..+..|+..   +.
T Consensus        11 i~eG~L~K~g~----~~~~~WkkR~fvL~~~~L~yy~~~-~-----------------~~~~~i~l~~~~~v~~~---~~   65 (119)
T d1omwa2          11 IMHGYMSKMGN----PFLTQWQRRYFYLFPNRLEWRGEG-E-----------------APQSLLTMEEIQSVEET---QI   65 (119)
T ss_dssp             CEEEEEEECC----------CEEEEEEEETTEEEEECTT-S-----------------CCCEEEEGGGEEEEEEE---ES
T ss_pred             EEEEEEEEECC----CCCCCeEEEEEEEEcCeEEEEecc-c-----------------ccCccceeccccccccc---cc
Confidence            34677765421    123469999999987776653211 1                 11234677777666554   34


Q ss_pred             CCCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHHHHHH
Q 010976          444 PPGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLVYTIY  482 (496)
Q Consensus       444 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~  482 (496)
                      ..++.|.+.+..+. .||.|+|.++++.|..||+-+..-.
T Consensus        66 ~~~~~f~i~~~~~~~~~f~a~s~~e~~~W~~al~~a~~~~  105 (119)
T d1omwa2          66 KERKCLLLKIRGGKQFVLQCDSDPELVQWKKELRDAYREA  105 (119)
T ss_dssp             SSCEEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             cccceEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence            46677777766664 5899999999999999998765543

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.26  E-value=0.0083  Score=52.46  Aligned_cols=99  Identities=12%  Similarity=0.163  Sum_probs=60.3

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeeccccc-CCC
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACA-DLT  442 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  442 (496)
                      ++.|||........ .....|.++||+|....|..+......                .....|+|..+..+.... +..
T Consensus       105 ~k~G~L~K~~~~~~-~~~~~Wkkr~fvL~~~~L~yy~~~~~~----------------~~~~~i~L~~~~~~~~~~~~~~  167 (209)
T d1u5ea1         105 IKAGYLEKRRKDHS-FLGFEWQKRWCALSKTVFYYYGSDKDK----------------QQKGEFAIDGYDVRMNNTLRKD  167 (209)
T ss_dssp             EEEEEEEEEEHHHH-TTTCCCEEEEEEEETTEEEEESSTTCS----------------SCSEEEECTTCEEEECGGGCSS
T ss_pred             eEEEEEEEecCCCC-CccccceEEEEEEECCEEEEEecCCCC----------------ccceEEEecceeeeeccccccc
Confidence            45787764321100 012369999999987777664332221                123456666543332221 122


Q ss_pred             CCCCCeeeEeecCCce-eeeecChhhhhhHHHHHHHHH
Q 010976          443 LPPGAGLCIETIHGPV-FLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       443 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      -...++|.|-|..+.+ +|.|+|.++++.|+.||+.|.
T Consensus       168 ~~~~~~F~i~~~~~r~~~f~a~s~~e~~~Wi~al~~~i  205 (209)
T d1u5ea1         168 GKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL  205 (209)
T ss_dssp             TTGGGEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence            2345788887666666 789999999999999999875

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.0034  Score=49.32  Aligned_cols=100  Identities=15%  Similarity=0.195  Sum_probs=55.4

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCC-C
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL-T  442 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  442 (496)
                      ++.|+|....     .....|.++||+|...++...-..+...               .....+|+..+.-+...... .
T Consensus         8 ~k~G~L~K~~-----~~~k~Wk~RwfvL~~~~~l~~~~~~~~~---------------~~~~~i~l~~~~~~~~~~~~~~   67 (118)
T d1unqa_           8 VKEGWLHKRG-----EYIKTWRPRYFLLKNDGTFIGYKERPQD---------------VDQREAPLNNFSVAQCQLMKTE   67 (118)
T ss_dssp             EEEEEEEEEC-----SSSCCEEEEEEEEETTSEEEEESSCCCS---------------HHHHTSCSEEEECTTCEEEEEC
T ss_pred             EEEEEEEEEC-----CCCCCcEEEEEEEeccceeEEEeeccCc---------------cccccccccceEEeeccccccc
Confidence            4567776542     1234799999999755433221111100               11222333322222211111 2


Q ss_pred             CCCCCeeeEeecCCc----eeeeecChhhhhhHHHHHHHHHHHHh
Q 010976          443 LPPGAGLCIETIHGP----VFLVADSWEALDGWLDAIRLVYTIYA  483 (496)
Q Consensus       443 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~~~  483 (496)
                      -+..+.|.+.+..+.    .+|.|+|.++++.|+.||.-+..-+.
T Consensus        68 ~~~~~~f~i~~~~~~~~~~~~f~a~s~~e~~~Wi~ai~~~~~~~~  112 (118)
T d1unqa_          68 RPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLK  112 (118)
T ss_dssp             SSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCceEEEEeccccceeEEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence            234567777655443    47899999999999999998876543

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.18  E-value=0.013  Score=45.29  Aligned_cols=93  Identities=15%  Similarity=0.127  Sum_probs=57.9

Q ss_pred             hhhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCC
Q 010976          363 YLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT  442 (496)
Q Consensus       363 ~l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (496)
                      ....|+|.....     ....|.++||+|....|........                ......|++.+.......  ..
T Consensus         8 ~~~~G~L~k~~~-----~~~~W~kr~~vL~~~~L~~~k~~~~----------------~~~~~~i~l~~~~~~~~~--~~   64 (109)
T d1wgqa_           8 STMSGYLYRSKG-----SKKPWKHLWFVIKNKVLYTYAASED----------------VAALESQPLLGFTVTLVK--DE   64 (109)
T ss_dssp             CSCEEEEEEESS-----TTSCCEEEEEEEETTEEEEESCTTC----------------SSCSEEEECSSEEEEECC--CS
T ss_pred             CcEEEEEEEECC-----CCCCceEEEEEEeCCEEEEeccccc----------------cccccccccceeeeeecc--cc
Confidence            345677754421     1236999999999877754332221                112344666554332222  22


Q ss_pred             CCCCCeeeEeecCCce-eeeecChhhhhhHHHHHHHH
Q 010976          443 LPPGAGLCIETIHGPV-FLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       443 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~  478 (496)
                      -...++|.|.+..+-+ +|.|+|.++++.|+.||+.+
T Consensus        65 ~~~~~~F~i~~~~~~~~~f~a~s~~~~~~Wi~ai~~a  101 (109)
T d1wgqa_          65 NSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEG  101 (109)
T ss_dssp             SCSSSEEEEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             cccceeeeeecccceEEEEECCCHHHHHHHHHHHHHH
Confidence            2356778887655544 77899999999999999987

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=94.82  E-value=0.0088  Score=47.28  Aligned_cols=34  Identities=12%  Similarity=0.218  Sum_probs=29.0

Q ss_pred             CCCeeeEeecCCce-eeeecChhhhhhHHHHHHHH
Q 010976          445 PGAGLCIETIHGPV-FLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       445 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~  478 (496)
                      ..+.|.+.+..+.+ +|.|+|.++++.|++||..+
T Consensus        81 ~~~~f~i~~~~~~~~~l~a~s~~e~~~Wi~aI~~a  115 (123)
T d1wjma_          81 RKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAA  115 (123)
T ss_dssp             CSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             cCcEEEEEcCCCcEEEEECCCHHHHHHHHHHHHHH
Confidence            56888888777775 88999999999999999854

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.0097  Score=46.28  Aligned_cols=96  Identities=19%  Similarity=0.288  Sum_probs=53.6

Q ss_pred             hhhhccccCCCCCCCCCChhhhhhhccccchhhhh--hhccccccccccccCCCCCCCCCCCceeeeecCcee--ecccc
Q 010976          363 YLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQ--QASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIV--SVSAC  438 (496)
Q Consensus       363 ~l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  438 (496)
                      -++.|+|....     .....|.++||+|...++.  ........               ..+...|+|.+..  .+..+
T Consensus        11 v~k~G~L~K~~-----~~~k~WkkR~fvL~~~~~~~~~~~~~~~~---------------~~p~~~i~L~~~~i~~~~~~   70 (116)
T d1x1ga1          11 VVKQGYLAKQG-----HKRKNWKVRRFVLRKDPAFLHYYDPSKEE---------------NRPVGGFSLRGSLVSALEDN   70 (116)
T ss_dssp             EEEEEEEEEEC-----SSSSSEEEEEEEEEESSCEEEEECSSSCC---------------SSCSCCEESTTCCCEECCSS
T ss_pred             EEEEEEEEEEc-----CCCCCCceEEEEEECCCcEEEEecccccc---------------ccceeEEEcCCCEEEEeccc
Confidence            35577776442     2234799999999755432  21111110               1123344444332  22222


Q ss_pred             cCCC----CCCCCeeeEeecCCce-eeeecChhhhhhHHHHHHHH
Q 010976          439 ADLT----LPPGAGLCIETIHGPV-FLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       439 ~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~  478 (496)
                      ....    -...+.|.+-+..+.. ||.|+|.++++.|..||+-|
T Consensus        71 ~~~~~~~~~~~~~~f~i~~~~~~~~~f~a~s~ee~~~Wi~ai~~~  115 (116)
T d1x1ga1          71 GVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKL  115 (116)
T ss_dssp             SSCSSCSSCCCSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHH
T ss_pred             CcccccccccccceeEEEeCCCeEEEEECCCHHHHHHHHHHHHhh
Confidence            2221    1234456676555555 78899999999999999865

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.012  Score=44.34  Aligned_cols=78  Identities=15%  Similarity=0.123  Sum_probs=48.9

Q ss_pred             hhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCce-ee
Q 010976          382 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-FL  460 (496)
Q Consensus       382 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  460 (496)
                      ..|.++||+|....|..+......               ..+...+++... .|....+..  ..+.|.+-+.++.+ +|
T Consensus        13 ~~WkkR~fvL~~~~L~yyk~~~~~---------------~~~~~~i~l~~~-~v~~~~~~~--~~~~f~~~~~~~~~~~l   74 (95)
T d2cofa1          13 SQWKSRWCSVRDNHLHFYQDRNRS---------------KVAQQPLSLVGC-EVVPDPSPD--HLYSFRILHKGEELAKL   74 (95)
T ss_dssp             TEEEEEEEEECSSCEEEECSSTTC---------------SEEEEEECTTTC-EEECCCBTT--BSCEEEEEETTEEEEEE
T ss_pred             CCceEEEEEEECCEEEEEeccccc---------------ccccccccccce-EEEeccccc--ceecceeccccceeEEe
Confidence            479999999987777665322211               112335555433 343333322  33566665555544 79


Q ss_pred             eecChhhhhhHHHHHHH
Q 010976          461 VADSWEALDGWLDAIRL  477 (496)
Q Consensus       461 ~~~~~~~~~~~~~a~~~  477 (496)
                      .|+|.++++.|+.+|+-
T Consensus        75 ~A~s~~e~~~Wi~~L~~   91 (95)
T d2cofa1          75 EAKSSEEMGHWLGLLLS   91 (95)
T ss_dssp             ECSSHHHHHHHHHHHHH
T ss_pred             eCCCHHHHHHHHHHHHH
Confidence            99999999999999974

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.011  Score=48.80  Aligned_cols=91  Identities=13%  Similarity=0.056  Sum_probs=61.0

Q ss_pred             hhhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCC
Q 010976          364 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  443 (496)
Q Consensus       364 l~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (496)
                      ++.|++....       ...|.++||+|....|..+-.+..                ....-.|+|.....++      .
T Consensus        49 lK~G~L~Kr~-------~~~wkkR~FvL~~~~L~YYkd~~~----------------~~~kG~I~L~~~~~v~------~   99 (147)
T d1w1ha_          49 LKMGPVDKRK-------GLFARRRQLLLTEGPHLYYVDPVN----------------KVLKGEIPWSQELRPE------A   99 (147)
T ss_dssp             EEEEEEEECC-------TTSCEEEEEEEETTTEEEEEETTT----------------TEEEEEECCCTTCEEE------E
T ss_pred             EEEEEEEeec-------CCcceEEEEEEcCCeeEEEeCCCc----------------ccccceEEeccccccc------c
Confidence            4578887642       235999999998777766532211                1234567776544443      3


Q ss_pred             CCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHHHHHhh
Q 010976          444 PPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYAR  484 (496)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  484 (496)
                      ..+..|.|-| .+.+|.++++..++..|++||.-|...+..
T Consensus       100 ~~~~~F~I~t-~~Rty~l~a~~~d~~~Wv~aI~~v~~~~~~  139 (147)
T d1w1ha_         100 KNFKTFFVHT-PNRTYYLMDPSGNAHKWCRKIQEVWRQRYQ  139 (147)
T ss_dssp             EETTEEEEEC-SSCEEEEECTTSCHHHHHHHHHHHHHHHHC
T ss_pred             ccCceEEEec-CceEEEEEcChHHHHHHHHHHHHHHHHHhh
Confidence            5667899985 455766666778899999999988766543

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=94.36  E-value=0.014  Score=44.64  Aligned_cols=84  Identities=12%  Similarity=0.251  Sum_probs=49.2

Q ss_pred             hhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCce-ee
Q 010976          382 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-FL  460 (496)
Q Consensus       382 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  460 (496)
                      ..|.++||+|....|..+........       .+...   ....|++.... +.+..+.+ ..-+.|.+.+..|.+ +|
T Consensus        21 ~~Wk~r~~vL~~~~L~~yk~~~~~~~-------~~~~~---~~~~i~l~~~~-~~~~~~~~-~~~~~f~i~~~~~~~~~~   88 (106)
T d1btna_          21 RSWHNVYCVINNQEMGFYKDAKSAAS-------GIPYH---SEVPVSLKEAI-CEVALDYK-KKKHVFKLRLSDGNEYLF   88 (106)
T ss_dssp             CCCEEEEEEEETTEEEEESSHHHHHH-------TCCSS---SCCCEECTTCE-EEECSSCC-SSSSEEEEECTTSCEEEE
T ss_pred             CCCcEEEEEEECCEEEEEeChhhccc-------ccccC---cceeEEeccce-eeeccccc-cCcceEeecccCCCEEEE
Confidence            46999999998666665433222110       00000   11123433221 22222211 134789999888876 78


Q ss_pred             eecChhhhhhHHHHHHH
Q 010976          461 VADSWEALDGWLDAIRL  477 (496)
Q Consensus       461 ~~~~~~~~~~~~~a~~~  477 (496)
                      .|+|.++++.|++||..
T Consensus        89 ~a~s~~e~~~W~~ai~~  105 (106)
T d1btna_          89 QAKDDEEMNTWIQAISS  105 (106)
T ss_dssp             ECSSHHHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHh
Confidence            89999999999999974

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.03  E-value=0.034  Score=44.06  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=18.8

Q ss_pred             eeeecChhhhhhHHHHHHHHH
Q 010976          459 FLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       459 ~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      +|.|+|.++++.|++||+.+.
T Consensus       103 ~l~A~s~~e~~~Wi~al~~~i  123 (130)
T d1v88a_         103 IIRATSESDGRCWMDALELAL  123 (130)
T ss_dssp             EEECSSHHHHHHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHh
Confidence            578999999999999998774

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.55  E-value=0.15  Score=36.47  Aligned_cols=44  Identities=25%  Similarity=0.154  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010976          207 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW  255 (496)
Q Consensus       207 ~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~l  255 (496)
                      +-..+..+..    .|+|++||+++++|..++..|+++ +.+..++..|
T Consensus        11 ~~RrAer~l~----~~rydeAIech~kA~~yl~eA~kl-t~s~~~l~SL   54 (83)
T d2crba1          11 QSRRADRLLA----AGKYEEAISCHRKATTYLSEAMKL-TESEQAHLSL   54 (83)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHTT-CCCHHHHHHH
T ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            4445556666    999999999999999999999998 6677776533

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.33  E-value=0.087  Score=41.19  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=19.2

Q ss_pred             eeeeecChhhhhhHHHHHHHH
Q 010976          458 VFLVADSWEALDGWLDAIRLV  478 (496)
Q Consensus       458 ~~~~~~~~~~~~~~~~a~~~~  478 (496)
                      .+|.|+|.++++.|++||.-+
T Consensus        98 ~~f~a~s~~e~~~Wi~aL~~~  118 (127)
T d1fgya_          98 YRISAPSPEEKEEWMKSIKAS  118 (127)
T ss_dssp             EEEECSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHH
Confidence            489999999999999999876

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.97  E-value=0.37  Score=35.79  Aligned_cols=48  Identities=15%  Similarity=0.077  Sum_probs=40.5

Q ss_pred             hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 010976          183 DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP  249 (496)
Q Consensus       183 ~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~  249 (496)
                      ..++..|+.+..+|++.+               .    .|+|++|+.+|.+|++.|..++...++..
T Consensus         9 ~~~~~~A~~l~~~Av~~D---------------~----~g~y~eA~~~Y~~aie~l~~~~~~e~~~~   56 (93)
T d1wfda_           9 DSDSTAAVAVLKRAVELD---------------A----ESRYQQALVCYQEGIDMLLQVLKGTKESS   56 (93)
T ss_dssp             CCHHHHHHHHHHHHHHHH---------------H----TTCHHHHHHHHHHHHHHHHHHHHTCCCHH
T ss_pred             ChHHHHHHHHHHHHHHHH---------------H----cCCHHHHHHHHHHHHHHHHHHhhccCCHH
Confidence            445888999888888754               3    99999999999999999999998887543

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.80  E-value=0.45  Score=36.73  Aligned_cols=56  Identities=18%  Similarity=0.280  Sum_probs=41.3

Q ss_pred             eeeeecCceeecccccCC--------CCCCCCeeeE--eecCCceeeeecChhhhhhHHHHHHHHH
Q 010976          424 AIRIEVPDIVSVSACADL--------TLPPGAGLCI--ETIHGPVFLVADSWEALDGWLDAIRLVY  479 (496)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~  479 (496)
                      ...||+.+|.+|....+.        ..|+...|.|  ++..-.++|+|.|.++.+.|+++|+.+.
T Consensus        53 ~~~i~i~~I~~V~~G~~s~~~~~~~~~~~~~~~FsIv~~~~~r~l~l~a~s~~~~~~Wv~~L~~L~  118 (119)
T d1maia_          53 SQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKII  118 (119)
T ss_dssp             TTEEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEEEEESSSCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ceEEEHHHceEEEcCCCCchhhhcccCCCcCceEEEEEcCCCcEEEEEECCHHHHHHHHHHHHHHh
Confidence            457999999999876652        3344444444  4333457999999999999999999764

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.64  E-value=0.17  Score=36.22  Aligned_cols=47  Identities=19%  Similarity=0.236  Sum_probs=39.4

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 010976          185 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ  250 (496)
Q Consensus       185 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~  250 (496)
                      .+++|+....+|++.+               .    .|+|.+|+.+|.+|+..|..++..+++++.
T Consensus         7 ~l~~A~~l~~~Av~~D---------------~----~~~y~~A~~~Y~~a~~~l~~~l~~e~~~~~   53 (77)
T d1wr0a1           7 NLQKAIDLASKAAQED---------------K----AGNYEEALQLYQHAVQYFLHVVKYEAQGDK   53 (77)
T ss_dssp             HHHHHHHHHHHHHHHH---------------H----TTCCSSHHHHHHHHHHHHHHHHHHSCCTGG
T ss_pred             HHHHHHHHHHHHHHHH---------------H----cCCHHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence            3778888888887754               3    899999999999999999999998876653

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=80.60  E-value=23  Score=33.02  Aligned_cols=142  Identities=16%  Similarity=0.037  Sum_probs=87.6

Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010976          136 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS  215 (496)
Q Consensus       136 g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~  215 (496)
                      +..+.|...+........+.......++. ....++              +..+...+...-.-........|.+|.++.
T Consensus       266 ~~~~~a~~~~~~~~~~~~~~~~~~w~~~~-al~~~~--------------~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~  330 (450)
T d1qsaa1         266 DVTDEQAKWRDDAIMRSQSTSLIERRVRM-ALGTGD--------------RRGLNTWLARLPMEAKEKDEWRYWQADLLL  330 (450)
T ss_dssp             TCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHHTC--------------HHHHHHHHHHSCTTGGGSHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHhhcccccchHHHHHHHHH-HHHcCC--------------hHHHHHHHHhcCcccccHHHHHHHHHHHHH
Confidence            45566666666665544444333333343 445567              888888777653333346788899999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHH---HHHH--HHhcC------C-------CC---HHHHHHHHHHHHHccCcchHHHhhhh
Q 010976          216 DRAKMRGRTKEAEELWKQATK---NYEK--AVQLN------W-------NS---PQALNNWGLALQELSAIVPAREKQTI  274 (496)
Q Consensus       216 ~~~~~~g~~~eA~~~~~~A~~---~~~~--Al~l~------P-------~~---~~a~~~lg~~l~~~g~~~~A~~~~~~  274 (496)
                      .    +|+.++|...|.++..   +|-.  +-.+.      +       ..   ...-...+..+..+|+.         
T Consensus       331 ~----~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~---------  397 (450)
T d1qsaa1         331 E----RGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLD---------  397 (450)
T ss_dssp             H----TTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCH---------
T ss_pred             H----cCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCc---------
Confidence            9    9999999966655432   1111  11111      0       00   01123345556666666         


Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976          275 VRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  308 (496)
Q Consensus       275 ~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~  308 (496)
                       ..|...++.++..  .+..-+..++.+..+.|.
T Consensus       398 -~~A~~e~~~l~~~--~~~~~~~~la~lA~~~g~  428 (450)
T d1qsaa1         398 -NTARSEWANLVKS--KSKTEQAQLARYAFNNQW  428 (450)
T ss_dssp             -HHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTC
T ss_pred             -hHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCC
Confidence             9999999888753  356677788999999997