Citrus Sinensis ID: 010980

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490------
MSCFGMINTGCSHCLQQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAASIPPGTPPSLPIDNGLLYSQQEDEVL
ccccHHHHHHcccHHcccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccHHHHHHHHcccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
cccccEEccccHHHHHHHHHHccccccEEEEcccccccHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHcHHHHcccHHHHcccHHHccHHcccccccccccccccccccccccccccccccccHHHHHHHccccccEccHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
mscfgmintgcshclqqrtlsslelpravsiasgsstpvsigdsptnvnlertngglghdshsisqfhgrqkqkaqdpardISIQVLEKFSLVTKFARETTSQLFRenhsngfgafekkfdsqsaldfdhkasydtetivneipvapdpvefdkltlvwgkprqpplgseewttfldnegrvmdsnALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRerkglidkdvvrtdrsvtffdgddnpnvHLLRDILLTYSFynfdlgycqgmsdllsPILFVMEDESQSFWCFVALMERlgpnfnrdqngmhSQLFALSKLVElldnplhnyfkqndclnyfFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICagengaasippgtppslpidngllysqqedevl
MSCFGMINTGCSHCLQQRTLSSLELPRAVSiasgsstpvsigdsptNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWgkprqpplgseewttfldnegrvmdsnaLRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIkrqwqsispeqarrftkfrerkglidkdvvrtdrsvtffdgddnpnvHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAASIPPGTPPSLPIDNGllysqqedevl
MSCFGMINTGCSHCLQQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAASIPPGTPPSLPIDNGLLYSQQEDEVL
**CFGMINTGCSHCLQQRT**************************************************************ISIQVLEKFSLVTKFARETTSQLFR*****GFGAFE*******ALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPR***LGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSI*****RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGEN*****************************
*SCFGMINTGCSHCL********************************************************************IQVLEKFSLV*********************************************************************************FLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAG*******************************
MSCFGMINTGCSHCLQQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSH*****************RDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAASIPPGTPPSLPIDNGLLYSQQEDEVL
*SCFGMINTGCSHCLQQRTLSSLELPRAVSIASG*****************************************QDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALD**************E*****DPVEFDKLTL***KPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAASIPP**********************
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSCFGMINTGCSHCLQQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAASIPPGTPPSLPIDNGLLYSQQEDEVL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query496 2.2.26 [Sep-21-2011]
Q8TC07691 TBC1 domain family member yes no 0.604 0.434 0.48 2e-83
Q9CXF4671 TBC1 domain family member yes no 0.604 0.447 0.473 9e-83
Q8BYH7645 TBC1 domain family member no no 0.600 0.462 0.463 1e-70
Q9HA65648 TBC1 domain family member no no 0.600 0.459 0.459 4e-68
P09379730 GTPase-activating protein yes no 0.596 0.405 0.413 6e-64
Q8TBP0767 TBC1 domain family member no no 0.586 0.379 0.424 5e-61
Q9UUH7743 GTPase-activating protein yes no 0.618 0.413 0.406 8e-61
Q6BU76757 GTPase-activating protein yes no 0.600 0.393 0.352 2e-55
Q6FWI1745 GTPase-activating protein yes no 0.629 0.418 0.340 2e-53
P48365746 GTPase-activating protein yes no 0.600 0.399 0.359 7e-53
>sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2 Back     alignment and function desciption
 Score =  310 bits (793), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 144/300 (48%), Positives = 207/300 (69%)

Query: 163 RQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAER 222
           R+ P+  EEWT  +D+EGR+++ + +++ IF GG+ H LR++ W FLLGY+ +DST  ER
Sbjct: 313 RREPVSLEEWTKNIDSEGRILNVDNMKQMIFRGGLSHALRKQAWKFLLGYFPWDSTKEER 372

Query: 223 EYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPN 282
             L+  K  EY  +K QW+SIS EQ +R ++ R+ + LI+KDV RTDR+  F++G DNP 
Sbjct: 373 TQLQKQKTDEYFRMKLQWKSISQEQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPG 432

Query: 283 VHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQ 342
           + LL DIL+TY  Y+FDLGY QGMSDLLSP+L+VME+E  +FWCF + M+++  NF    
Sbjct: 433 LILLHDILMTYCMYDFDLGYVQGMSDLLSPLLYVMENEVDAFWCFASYMDQMHQNFEEQM 492

Query: 343 NGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVL 402
            GM +QL  LS L+ LLD+   +Y +  D    +FCFRW+LI+FKREF +   +RLWEV+
Sbjct: 493 QGMKTQLIQLSTLLRLLDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVM 552

Query: 403 WTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCI 462
           WT     + HL +C AIL+  + +IM +   F+ +LK INELS +ID++ IL  AEA+ +
Sbjct: 553 WTELPCTNFHLLLCCAILESEKQQIMEKHYGFNEILKHINELSMKIDVEDILCKAEAISL 612
Acts as a GTPase activating protein for RAB7A. Does not act on RAB4, RAB5 or RAB6.
Homo sapiens (taxid: 9606)
>sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1 Back     alignment and function description
>sp|Q8BYH7|TBC17_MOUSE TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=2 SV=2 Back     alignment and function description
>sp|Q9HA65|TBC17_HUMAN TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=1 SV=2 Back     alignment and function description
>sp|P09379|GYP7_YARLI GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|Q8TBP0|TBC16_HUMAN TBC1 domain family member 16 OS=Homo sapiens GN=TBC1D16 PE=2 SV=1 Back     alignment and function description
>sp|Q9UUH7|GYP7_SCHPO GTPase-activating protein gyp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp7 PE=3 SV=1 Back     alignment and function description
>sp|Q6BU76|GYP7_DEBHA GTPase-activating protein GYP7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|Q6FWI1|GYP7_CANGA GTPase-activating protein GYP7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GYP7 PE=3 SV=1 Back     alignment and function description
>sp|P48365|GYP7_YEAST GTPase-activating protein GYP7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GYP7 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query496
225445585 657 PREDICTED: GTPase-activating protein gyp 0.961 0.726 0.805 0.0
297738991 684 unnamed protein product [Vitis vinifera] 0.961 0.697 0.761 0.0
255572477 645 conserved hypothetical protein [Ricinus 0.985 0.758 0.793 0.0
224087100487 predicted protein [Populus trichocarpa] 0.961 0.979 0.790 0.0
356548490 656 PREDICTED: TBC1 domain family member 15- 0.963 0.728 0.758 0.0
449443057 655 PREDICTED: TBC1 domain family member 15- 0.959 0.726 0.767 0.0
356562977 655 PREDICTED: TBC1 domain family member 15- 0.961 0.728 0.756 0.0
357478201 666 TBC1 domain family member [Medicago trun 0.963 0.717 0.742 0.0
297792599 674 hypothetical protein ARALYDRAFT_495330 [ 0.951 0.700 0.702 0.0
186531517 673 RabGAP/TBC domain-containing protein [Ar 0.951 0.701 0.701 0.0
>gi|225445585|ref|XP_002285365.1| PREDICTED: GTPase-activating protein gyp7-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  820 bits (2119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/477 (80%), Positives = 433/477 (90%)

Query: 17  QRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQ 76
           QRTLSSLELP AVS+A+G ST VS+ + P+N N E+ +GG      + SQ++GR + K  
Sbjct: 179 QRTLSSLELPMAVSVANGPSTSVSVSEPPSNENQEKADGGNFDGLGATSQYNGRHRPKIH 238

Query: 77  DPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDT 136
           DPARD+SIQVLEKFSLVTKFAR+TTSQLFRE+H +GFG+ +++  +QS LD  HKAS D 
Sbjct: 239 DPARDLSIQVLEKFSLVTKFARDTTSQLFRESHGDGFGSNDRRHHNQSLLDSPHKASSDE 298

Query: 137 ETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGG 196
           + + +EIPV  DP+EFDKL LVWGKPRQPPLGSEEW TFLD+EGR+MDS ALRKRIFYGG
Sbjct: 299 QKVPDEIPVPSDPLEFDKLALVWGKPRQPPLGSEEWATFLDSEGRIMDSKALRKRIFYGG 358

Query: 197 VDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRE 256
           ++H LR+EVW FLLGY+AYDST AEREYL  IKKSEYE +K+QWQSISPEQA+RFTKFRE
Sbjct: 359 IEHSLRKEVWTFLLGYHAYDSTSAEREYLVSIKKSEYETVKQQWQSISPEQAKRFTKFRE 418

Query: 257 RKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFV 316
           RKGLI+KDVVRTDRS++F+DGDDNPNV+LLRDILLTYSFYNFDLGYCQGMSDLLSPILFV
Sbjct: 419 RKGLIEKDVVRTDRSLSFYDGDDNPNVYLLRDILLTYSFYNFDLGYCQGMSDLLSPILFV 478

Query: 317 MEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYF 376
           M+DE++SFWCFVALMERLGPNFNRDQNGMH+QLFA+SKLVELLD+PLHNYFKQNDCLNYF
Sbjct: 479 MKDEAESFWCFVALMERLGPNFNRDQNGMHTQLFAISKLVELLDSPLHNYFKQNDCLNYF 538

Query: 377 FCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDT 436
           FCFRWVLIQFKREFEYEKTM+LWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDT
Sbjct: 539 FCFRWVLIQFKREFEYEKTMKLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDT 598

Query: 437 LLKFINELSGRIDLDAILRDAEALCICAGENGAASIPPGTPPSLPIDNGLLYSQQED 493
           LLKFINELSG+IDLDA LRDAEALCICAGENGAA+IPPGTPPSLPID+GLL  QQ+D
Sbjct: 599 LLKFINELSGQIDLDATLRDAEALCICAGENGAANIPPGTPPSLPIDSGLLCPQQDD 655

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738991|emb|CBI28236.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255572477|ref|XP_002527173.1| conserved hypothetical protein [Ricinus communis] gi|223533438|gb|EEF35186.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224087100|ref|XP_002308065.1| predicted protein [Populus trichocarpa] gi|222854041|gb|EEE91588.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356548490|ref|XP_003542634.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|449443057|ref|XP_004139297.1| PREDICTED: TBC1 domain family member 15-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356562977|ref|XP_003549744.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|357478201|ref|XP_003609386.1| TBC1 domain family member [Medicago truncatula] gi|355510441|gb|AES91583.1| TBC1 domain family member [Medicago truncatula] Back     alignment and taxonomy information
>gi|297792599|ref|XP_002864184.1| hypothetical protein ARALYDRAFT_495330 [Arabidopsis lyrata subsp. lyrata] gi|297310019|gb|EFH40443.1| hypothetical protein ARALYDRAFT_495330 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|186531517|ref|NP_200071.2| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|332008854|gb|AED96237.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query496
DICTYBASE|DDB_G0288811829 DDB_G0288811 "putative GTPase 0.816 0.488 0.421 2.5e-81
ZFIN|ZDB-GENE-041111-251664 tbc1d15 "TBC1 domain family, m 0.604 0.451 0.486 1.5e-79
UNIPROTKB|F1NBY5667 TBC1D15 "Uncharacterized prote 0.600 0.446 0.486 1.4e-78
UNIPROTKB|F1PGI0682 TBC1D15 "Uncharacterized prote 0.604 0.439 0.473 2.7e-77
UNIPROTKB|J9NYJ6674 TBC1D15 "Uncharacterized prote 0.604 0.445 0.473 2.7e-77
UNIPROTKB|A8K8E1445 TBC1D15 "TBC1 domain family, m 0.604 0.674 0.48 2.7e-77
UNIPROTKB|J3KNI9682 TBC1D15 "TBC1 domain family me 0.604 0.439 0.48 2.7e-77
UNIPROTKB|Q8TC07691 TBC1D15 "TBC1 domain family me 0.604 0.434 0.48 2.7e-77
UNIPROTKB|F1SH24674 TBC1D15 "Uncharacterized prote 0.604 0.445 0.473 2.7e-77
UNIPROTKB|F1N090675 TBC1D15 "Uncharacterized prote 0.604 0.444 0.473 3.4e-77
DICTYBASE|DDB_G0288811 DDB_G0288811 "putative GTPase activating protein (GAP)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
 Identities = 183/434 (42%), Positives = 270/434 (62%)

Query:    40 SIGDSPTNVN-LERTNGGLGHDSHS-ISQF-HGRQKQKAQDPARDISIQVLEKFSLVTKF 96
             S+  SPTN   L+R       D+ + ++Q     QK   ++PA+ I       F  +   
Sbjct:   385 SLSTSPTNKRALKREISSSIFDNFAKVTQLAKSAQKNIFEEPAKRID----NHFRNLIGS 440

Query:    97 ARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLT 156
                  S L  +N +N +  F+   +S S+L+    AS D  T     P     + F  + 
Sbjct:   441 KSSIGSNLSPQNANNQY--FDILNESGSSLN----ASSDYFT-----PFNISSLNFS-IE 488

Query:   157 LVWGKPRQPPLGSEEWTTFLDNEGRVMDSNA--LRKRIFYGGVDHKLRREVWAFLLGYYA 214
             L   +    P+   EW ++ D+EGR+  +N   L K+IFYGG++  +R+EVW FLLG Y+
Sbjct:   489 LGANRRECNPMSPSEWYSYFDDEGRICLANQQILLKKIFYGGIEESIRQEVWPFLLGVYS 548

Query:   215 YDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDR-SVT 273
             +DSTY+ RE ++  K  +Y+ +KRQW+SIS EQ  RF+K++ RK LI KDV+RTDR    
Sbjct:   549 FDSTYSSREVVKYEKTQQYQTVKRQWESISCEQESRFSKYQSRKLLIQKDVIRTDRLHPM 608

Query:   274 FFDGDD----NPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVM---EDESQSFWC 326
             F  G+D    N N+ L+RD+LLTYSF+NFD+GY QGMSDLLSPI+ VM     E + FWC
Sbjct:   609 FIQGEDDIDSNENLRLMRDVLLTYSFFNFDIGYVQGMSDLLSPIISVMGGVSKEVECFWC 668

Query:   327 FVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQF 386
             F  LM+RL  NF++DQNGMH QL  LSKL++ +D  L+ + + N+  N +F F+ VLI F
Sbjct:   669 FKGLMDRLESNFHKDQNGMHHQLSTLSKLLKFIDLELYTHLEANNGGNMYFFFQSVLICF 728

Query:   387 KREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSG 446
             KREF +   + LWE+LW++Y++++L +++C++IL + RN+I+ E M FD +LK INE + 
Sbjct:   729 KREFPFHDVLTLWEILWSNYMTKNLPIFMCLSILIKERNQILDENMAFDQILKLINEKAN 788

Query:   447 RIDLDAILRDAEAL 460
             R+DL+ IL DAE++
Sbjct:   789 RMDLEDILVDAESM 802
GO:0032851 "positive regulation of Rab GTPase activity" evidence=IEA;ISS
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005097 "Rab GTPase activator activity" evidence=IEA;ISS
GO:0008150 "biological_process" evidence=ND
ZFIN|ZDB-GENE-041111-251 tbc1d15 "TBC1 domain family, member 15" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NBY5 TBC1D15 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PGI0 TBC1D15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NYJ6 TBC1D15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A8K8E1 TBC1D15 "TBC1 domain family, member 15, isoform CRA_d" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J3KNI9 TBC1D15 "TBC1 domain family member 15" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TC07 TBC1D15 "TBC1 domain family member 15" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SH24 TBC1D15 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1N090 TBC1D15 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0023001602
SubName- Full=Putative uncharacterized protein; (487 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query496
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 3e-55
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 9e-51
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 1e-41
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information 
 Score =  183 bits (467), Expect = 3e-55
 Identities = 76/237 (32%), Positives = 110/237 (46%), Gaps = 22/237 (9%)

Query: 193 FYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFT 252
              GV   LR  VW  LL     D             K  Y  + ++  +   +      
Sbjct: 1   VRKGVPPSLRGVVWKLLLNAQPMD---------TSADKDLYSRLLKET-APDDKSIVHQ- 49

Query: 253 KFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSP 312
                   I+KD+ RT    +FF   + P    LR +L  Y+ YN ++GYCQGM+ L +P
Sbjct: 50  --------IEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAP 101

Query: 313 ILFVMEDESQSFWCFVALMERLGPNF-NRDQNGMHSQLFALSKLVELLDNPLHNYFKQND 371
           +L VMEDE  +FWC V LMER GPNF   D +G+   L  L +LV+  D  L+ + K   
Sbjct: 102 LLLVMEDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDLG 161

Query: 372 CLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIM 428
                +  RW L  F RE   E  +R+W+VL+           V +A+LK +R+ ++
Sbjct: 162 ITPSLYALRWFLTLFARELPLEIVLRIWDVLFAE--GSDFLFRVALALLKLHRDVLL 216

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 496
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 100.0
KOG4567370 consensus GTPase-activating protein [General funct 100.0
KOG2058436 consensus Ypt/Rab GTPase activating protein [Intra 100.0
KOG2223586 consensus Uncharacterized conserved protein, conta 100.0
KOG2224781 consensus Uncharacterized conserved protein, conta 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
COG5210496 GTPase-activating protein [General function predic 100.0
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 100.0
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 100.0
KOG2222 848 consensus Uncharacterized conserved protein, conta 100.0
KOG4347 671 consensus GTPase-activating protein VRP [General f 99.97
KOG1093725 consensus Predicted protein kinase (contains TBC a 99.97
KOG4436948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.97
KOG1091 625 consensus Ypt/Rab-specific GTPase-activating prote 99.95
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.93
KOG2595395 consensus Predicted GTPase activator protein [Sign 99.93
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 99.88
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.63
KOG3636 669 consensus Uncharacterized conserved protein, conta 99.59
KOG2801 559 consensus Probable Rab-GAPs [Intracellular traffic 99.22
KOG1648813 consensus Uncharacterized conserved protein, conta 99.14
PF149611296 BROMI: Broad-minded protein 97.12
KOG2197 488 consensus Ypt/Rab-specific GTPase-activating prote 96.82
KOG2224781 consensus Uncharacterized conserved protein, conta 88.36
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2.5e-47  Score=380.75  Aligned_cols=275  Identities=27%  Similarity=0.521  Sum_probs=243.5

Q ss_pred             CCCCHHHHHHHHHhCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcHHHHHHHHHHhhcCChHHHhhhhhhhhhccc
Q 010980          181 RVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGL  260 (496)
Q Consensus       181 ~~~~~~~Lr~~l~~~GIP~~~R~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~L~~~~~~~~~~~~~~~~~~~e~~~q  260 (496)
                      ..++.++||+ ++|.|||...|+.+|++|+|+.|.++  +.|+...+.++.+|.+++.++...........    +..+|
T Consensus       174 ~~id~~~Lr~-l~w~Gvp~~~Rp~~Wkll~gylp~n~--~rr~~~l~~Kr~eY~~~v~~~~~~~~~~~~~~----d~~rQ  246 (484)
T KOG1092|consen  174 PIIDLEKLRK-LCWNGVPSKMRPIVWKLLSGYLPPNS--DRREGTLQRKRKEYVDSVVQYFDSLTNGDEDQ----DTWRQ  246 (484)
T ss_pred             ccccHHHHHH-HccCCCCccccCccceeeecccCcch--hhhhhhHHHHHHHHHHHHHHHhccCCCccccC----ccccc
Confidence            3478899999 78999999999999999999999874  56788999999999999998865543212222    44569


Q ss_pred             ccccccccCCCccccCCCCChhHHHHHHHHHHHhhhcCCCCcccChhhhHHHHHHhcC----------------------
Q 010980          261 IDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME----------------------  318 (496)
Q Consensus       261 I~kDV~RT~~~~~~F~~~~~~~~~~L~rIL~ays~~np~iGY~QGM~~Iaa~lL~v~~----------------------  318 (496)
                      |..|++||.|..++|+.+.  .++.+.|||+.|+.++|..||+||+++++.|++.++.                      
T Consensus       247 I~id~prm~p~~~l~q~~~--vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~  324 (484)
T KOG1092|consen  247 IPIDIPRMNPHIPLFQQKI--VQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAEN  324 (484)
T ss_pred             cccCCCCCCccccchhhHH--HHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhccHHH
Confidence            9999999999999998643  5699999999999999999999999999999998862                      


Q ss_pred             ---ChHHHHHHHHHHHHhcCCCCCCCcchhhhHHHHHHHHHHHhChhhhhHHhhcCCCcchhHHHHHHHhccccCchHHH
Q 010980          319 ---DESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKT  395 (496)
Q Consensus       319 ---dE~~aFw~f~~Lm~~~~~~f~~~~~gl~~~l~~l~~LL~~~~P~L~~hL~~~~i~~~~f~~~WfltlF~~~~p~~~v  395 (496)
                         -|++||||+.+|++.+.+||...++|++..+..|+.|++.+|++||+||+++|++..+|+||||.+||.|+||+.++
T Consensus       325 ~~~iEADsyWClskLLD~IQDNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl~~~  404 (484)
T KOG1092|consen  325 AEDIEADAYWCLSKLLDGIQDNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFPLRCT  404 (484)
T ss_pred             HhhhhhhHHHHHHHHHHHhhhhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhccchhH
Confidence               18999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccc-hhHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHHhcc
Q 010980          396 MRLWEVLWTHYLS-EHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGR----IDLDAILRDAEALCICAGE  466 (496)
Q Consensus       396 lRLWD~~l~~g~~-~~fl~~valAiL~~~r~~IL~~~~d~~eil~~L~~lp~~----iD~d~ll~~A~~L~~~~~e  466 (496)
                      +||||.|++++.+ .+||+|||+|+|..++++|+  ++||.+++.|||++|..    -+++-||..|..+......
T Consensus       405 iRlWDTY~aE~dgf~~FhvYvcAAFL~kW~~eL~--e~DFQ~~ilfLQnlPT~~W~d~eIellLseA~~~k~~f~d  478 (484)
T KOG1092|consen  405 IRLWDTYLAEPDGFNEFHVYVCAAFLLKWSSELM--ENDFQELILFLQNLPTHNWSDREIELLLSEAFRLKSVFSD  478 (484)
T ss_pred             HHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHcc
Confidence            9999999998554 37999999999999999999  45999999999999954    2677888888877655443

>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information
>PF14961 BROMI: Broad-minded protein Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query496
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 8e-20
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 2e-16
2g77_A410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 4e-15
1fkm_A396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 2e-14
3hzj_A310 Crystal Structure Of The Rabgap Domain Of The Rabga 9e-10
2qq8_A334 Crystal Structure Of The Putative Rabgap Domain Of 4e-08
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 1e-07
3qye_A331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 4e-07
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure 
Iteration: 1

 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 133/290 (45%), Gaps = 45/290 (15%)
Query: 184 DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSI 243
           D + LRK   + GV  ++R   W  L GY   ++    R+     K+ EY     Q+   
Sbjct: 40  DLDELRK-CSWPGVPREVRPITWRLLSGYLPANT--ERRKLTLQRKREEYFGFIEQYYDS 96
Query: 244 SPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVH-LLRDILLTYSFYNFDLGY 302
             E+  + T +R+    I  D+ RT+  +  F     P V  +   IL  ++  +   GY
Sbjct: 97  RNEEHHQDT-YRQ----IHIDIPRTNPLIPLFQ---QPLVQEIFERILFIWAIRHPASGY 148
Query: 303 CQGMSDLLSPIL------FVMED-----------------ESQSFWCFVALMERLGPNFN 339
            QG++DL++P        +V ED                 E+ SFWC   L++ +  N+ 
Sbjct: 149 VQGINDLVTPFFVVFLSEYVEEDVENFDVTNLSQDMLRSIEADSFWCMSKLLDGIQDNYT 208
Query: 340 RDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLW 399
             Q G+  ++ AL +LV  +D  +HN+F++ +     F FRW+     RE     T+RLW
Sbjct: 209 FAQPGIQKKVKALEELVSRIDEQVHNHFRRYEVEYLQFAFRWMNNLLMRELPLRCTIRLW 268
Query: 400 EVLWTHYLSE-----HLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINEL 444
           +     Y SE     H HLYVC A L ++R +I+ E+ DF  LL  +  L
Sbjct: 269 DT----YQSEPEGFSHFHLYVCAAFLIKWRKEILDEE-DFQGLLMLLQNL 313
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310 Back     alignment and structure
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334 Back     alignment and structure
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query496
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 1e-84
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 3e-77
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 8e-47
2qq8_A334 TBC1 domain family member 14; structural genomics 7e-43
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 2e-37
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 4e-36
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
 Score =  263 bits (674), Expect = 1e-84
 Identities = 73/320 (22%), Positives = 124/320 (38%), Gaps = 43/320 (13%)

Query: 170 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIK 229
           +++   L   G   D   LR+  +  G+   +R   W  L GY   +     R      K
Sbjct: 27  DKFKQLL--AGPNTDLEELRRLSW-SGIPKPVRPMTWKLLSGYLPANVD--RRPATLQRK 81

Query: 230 KSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDI 289
           + EY      +     ++       ++    I  D+ R                 +   I
Sbjct: 82  QKEYFAFIEHYYDSRNDEV-----HQDTYRQIHIDIPRMSPEALILQ---PKVTEIFERI 133

Query: 290 LLTYSFYNFDLGYCQGMSDLLSPILFVM------------------------EDESQSFW 325
           L  ++  +   GY QG++DL++P   V                           E+ ++W
Sbjct: 134 LFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYW 193

Query: 326 CFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQ 385
           C   L++ +  N+   Q G+  ++  L +LV  +D  +H +  Q++     F FRW+   
Sbjct: 194 CMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNL 253

Query: 386 FKREFEYEKTMRLWEVLWTHYLS-EHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINEL 444
             RE     T+RLW+   +      H HLYVC A L R+R +I+ E+ DF  LL F+  L
Sbjct: 254 LMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEIL-EEKDFQELLLFLQNL 312

Query: 445 SGRI----DLDAILRDAEAL 460
                   D+  +L +A  L
Sbjct: 313 PTAHWDDEDISLLLAEAYRL 332
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query496
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 100.0
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
Probab=100.00  E-value=8.2e-53  Score=439.45  Aligned_cols=286  Identities=25%  Similarity=0.495  Sum_probs=251.6

Q ss_pred             HHHHHhchhccCCCCCHHHHHHHHHhCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcHHHHHHHHHHhhcCChHHH
Q 010980          169 SEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQA  248 (496)
Q Consensus       169 ~~~W~~~l~~~~~~~~~~~Lr~~l~~~GIP~~~R~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~L~~~~~~~~~~~~  248 (496)
                      .++|.++++.+. .++.++||+ ++++|||+.+|+.||++|+|+++.+.+  +|+.....++.+|..+++++.....   
T Consensus         8 ~~kw~~lL~~~~-~~d~~~Lr~-l~~~GIP~~lR~~vW~~LLg~~~~~~~--~~~~~l~~~~~~Y~~l~~~~~~~~~---   80 (396)
T 1fkm_A            8 ISKFDNILKDKT-IINQQDLRQ-ISWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFSDQH---   80 (396)
T ss_dssp             HHHHHHHHSSCS-BCCHHHHHH-HHTTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSSSSC---
T ss_pred             HHHHHHHHcCCC-CCCHHHHHH-HHHcCCCHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHHHHHHHHHHHhhccC---
Confidence            489999998653 479999999 568999999999999999999988754  5677888899999999998754211   


Q ss_pred             hhhhhhhhhcccccccccccCCCccccCCCCChhHHHHHHHHHHHhhhcCCCCcccChhhhHHHHHHhcC----------
Q 010980          249 RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME----------  318 (496)
Q Consensus       249 ~~~~~~~e~~~qI~kDV~RT~~~~~~F~~~~~~~~~~L~rIL~ays~~np~iGY~QGM~~Iaa~lL~v~~----------  318 (496)
                         ....+..+||++||.||+|++++|+.+  .+++.|+|||.+|+.+||++|||||||+|+++||+++.          
T Consensus        81 ---~~~~~~~~qI~~Dv~RT~p~~~~F~~~--~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~  155 (396)
T 1fkm_A           81 ---SRDIPTWHQIEIDIPRTNPHIPLYQFK--SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQID  155 (396)
T ss_dssp             ---STHHHHHHHHHHHGGGSSTTSGGGGSH--HHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGG
T ss_pred             ---cccHHHHHHHHHHhhhhCCCcccccCc--hHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccc
Confidence               112244569999999999999999863  57899999999999999999999999999999998751          


Q ss_pred             --------C----------hHHHHHHHHHHHHhcCCCCCCCcchhhhHHHHHHHHHHHhChhhhhHHhhcCCCcchhHHH
Q 010980          319 --------D----------ESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFR  380 (496)
Q Consensus       319 --------d----------E~~aFw~f~~Lm~~~~~~f~~~~~gl~~~l~~l~~LL~~~~P~L~~hL~~~~i~~~~f~~~  380 (496)
                              +          |++|||||++||+++..+|..+++|+...+..|+.+|+.++|+||+||++.++.+.+|+++
T Consensus       156 ~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~r  235 (396)
T 1fkm_A          156 DVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFR  235 (396)
T ss_dssp             GTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHH
T ss_pred             cccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence                    1          8999999999999998899999999999999999999999999999999999999999999


Q ss_pred             HHHHhccccCchHHHHHHHHHHHhhc---------------------------------------------------c--
Q 010980          381 WVLIQFKREFEYEKTMRLWEVLWTHY---------------------------------------------------L--  407 (496)
Q Consensus       381 WfltlF~~~~p~~~vlRLWD~~l~~g---------------------------------------------------~--  407 (496)
                      ||+++|+++||+++++||||+||++|                                                   .  
T Consensus       236 W~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  315 (396)
T 1fkm_A          236 WMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVED  315 (396)
T ss_dssp             HHHTTTGGGSCHHHHHHHHHHHHHHHC-----------------------------------------------------
T ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCcccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999988                                                   1  


Q ss_pred             -------c-hhHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHHhccCC
Q 010980          408 -------S-EHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGR----IDLDAILRDAEALCICAGENG  468 (496)
Q Consensus       408 -------~-~~fl~~valAiL~~~r~~IL~~~~d~~eil~~L~~lp~~----iD~d~ll~~A~~L~~~~~e~~  468 (496)
                             + ..|++|||+|||..+|+.||+  +||++++++|+++|..    .|++.++..|..++...+...
T Consensus       316 ~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~--~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~~~  386 (396)
T 1fkm_A          316 SGKMRQSSLNEFHVFVCAAFLIKWSDQLME--MDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKDAT  386 (396)
T ss_dssp             -------CHHHHHHHHHHHHHHHTHHHHTT--CCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC---
T ss_pred             chhccccchHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhccH
Confidence                   1 379999999999999999995  5999999999999964    589999999999988776654
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 496
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 1e-28
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 1e-13
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 6e-06
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  109 bits (274), Expect = 1e-28
 Identities = 36/197 (18%), Positives = 71/197 (36%), Gaps = 40/197 (20%)

Query: 170 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIK 229
            ++   L ++  +++   LR+   + G+    R  VW  L+GY   ++   E    R  K
Sbjct: 8   SKFDNILKDK-TIINQQDLRQIS-WNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRK 65

Query: 230 KSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDI 289
           +             S +              I+ D+ RT+  +  +      N   L+ I
Sbjct: 66  EYRDSLKHTFSDQHSRD--------IPTWHQIEIDIPRTNPHIPLYQFKSVQNS--LQRI 115

Query: 290 LLTYSFYNFDLGYCQGMSDLLSPILFVM----------------------------EDES 321
           L  ++  +   GY QG++DL++P                                 + E+
Sbjct: 116 LYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEA 175

Query: 322 QSFWCFVALMERLGPNF 338
            +FWC   L+E++  N+
Sbjct: 176 DTFWCLTKLLEQITDNY 192
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query496
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.97
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.85
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2e-31  Score=249.34  Aligned_cols=158  Identities=23%  Similarity=0.458  Sum_probs=131.7

Q ss_pred             HHHHhchhccCCCCCHHHHHHHHHhCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcHHHHHHHHHHhhcCChHHHh
Q 010980          170 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQAR  249 (496)
Q Consensus       170 ~~W~~~l~~~~~~~~~~~Lr~~l~~~GIP~~~R~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~L~~~~~~~~~~~~~  249 (496)
                      .+|.+++++ ...++.++||+ ++++|||+.+|+.||+.|+|+++.+++.  ++.....+++.|..+...+.....    
T Consensus         8 ~~~~~~l~~-~~~i~~~~lr~-l~~~Gip~~lR~~vW~~llg~~~~~~~~--~~~~~~~~~~~y~~~~~~~~~~~~----   79 (194)
T d1fkma1           8 SKFDNILKD-KTIINQQDLRQ-ISWNGIPKIHRPVVWKLLIGYLPVNTKR--QEGFLQRKRKEYRDSLKHTFSDQH----   79 (194)
T ss_dssp             HHHHHHHSS-CSBCCHHHHHH-HHTTCCCGGGHHHHHHHHTTCSCSBGGG--HHHHHHHHHHHHHHHHHHTSSSSC----
T ss_pred             HHHHHHhcc-cCCCCHHHHHH-HHHcCCChHHHHHHHHHHHhhcCCchhh--HHHHHHHHhhhhhhhhhhhhhccc----
Confidence            689888764 56789999998 5689999999999999999999888764  466677888889888776543221    


Q ss_pred             hhhhhhhhcccccccccccCCCccccCCCCChhHHHHHHHHHHHhhhcCCCCcccChhhhHHHHHHhcC-----------
Q 010980          250 RFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME-----------  318 (496)
Q Consensus       250 ~~~~~~e~~~qI~kDV~RT~~~~~~F~~~~~~~~~~L~rIL~ays~~np~iGY~QGM~~Iaa~lL~v~~-----------  318 (496)
                        ....+..++|++||.||+|++++|..+  ++++.|+|||.+|+.+||++|||||||+|||+|+.++.           
T Consensus        80 --~~~~~~~~~I~~Dv~RT~~~~~~f~~~--~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~  155 (194)
T d1fkma1          80 --SRDIPTWHQIEIDIPRTNPHIPLYQFK--SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDD  155 (194)
T ss_dssp             --STHHHHHHHHHHHGGGSSTTSGGGGSH--HHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGG
T ss_pred             --ccchHHHHHHHHHHHhcCCcccccccc--hhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhh
Confidence              122345569999999999999999764  56799999999999999999999999999999998862           


Q ss_pred             -----------------ChHHHHHHHHHHHHhcCCCCC
Q 010980          319 -----------------DESQSFWCFVALMERLGPNFN  339 (496)
Q Consensus       319 -----------------dE~~aFw~f~~Lm~~~~~~f~  339 (496)
                                       .|++|||||++||+++.++|.
T Consensus       156 ~~~~~~~~~~~~~~~~~~Ead~F~~f~~lm~~i~d~y~  193 (194)
T d1fkma1         156 VEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYI  193 (194)
T ss_dssp             TTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSS
T ss_pred             hhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhhhccCC
Confidence                             289999999999999887764
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure